Query 014404
Match_columns 425
No_of_seqs 253 out of 1921
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02744 dihydrolipoyllysine-r 100.0 2.9E-92 6.3E-97 722.9 42.3 421 1-425 117-539 (539)
2 PRK05704 dihydrolipoamide succ 100.0 1.1E-91 2.4E-96 705.7 41.9 396 1-425 7-405 (407)
3 TIGR01347 sucB 2-oxoglutarate 100.0 1.8E-91 3.9E-96 702.5 42.9 396 1-425 5-401 (403)
4 TIGR02927 SucB_Actino 2-oxoglu 100.0 6.7E-90 1.4E-94 722.7 43.2 420 1-422 140-584 (590)
5 TIGR01349 PDHac_trf_mito pyruv 100.0 1.4E-88 3E-93 689.3 43.3 418 1-425 4-435 (435)
6 PLN02528 2-oxoisovalerate dehy 100.0 1.7E-87 3.7E-92 677.8 42.1 396 1-425 3-413 (416)
7 TIGR01348 PDHac_trf_long pyruv 100.0 3.6E-87 7.9E-92 697.1 42.0 412 1-425 121-546 (546)
8 KOG0557 Dihydrolipoamide acety 100.0 1.8E-86 3.9E-91 648.0 32.4 420 1-425 43-470 (470)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 2.8E-85 6E-90 658.7 35.8 395 1-425 7-403 (404)
10 PRK11854 aceF pyruvate dehydro 100.0 1.2E-83 2.7E-88 682.4 42.3 406 1-425 211-633 (633)
11 PRK11856 branched-chain alpha- 100.0 3.9E-82 8.5E-87 643.4 42.2 402 1-425 7-410 (411)
12 PRK11855 dihydrolipoamide acet 100.0 2.2E-82 4.8E-87 664.4 41.6 407 1-425 124-547 (547)
13 PLN02226 2-oxoglutarate dehydr 100.0 4.9E-81 1.1E-85 627.8 38.1 366 1-425 96-461 (463)
14 PTZ00144 dihydrolipoamide succ 100.0 8.3E-80 1.8E-84 615.4 37.4 368 1-425 49-416 (418)
15 KOG0558 Dihydrolipoamide trans 100.0 2.2E-77 4.8E-82 559.7 24.7 390 2-425 70-471 (474)
16 PRK14843 dihydrolipoamide acet 100.0 2.1E-73 4.5E-78 560.9 27.2 293 130-425 46-347 (347)
17 PRK11857 dihydrolipoamide acet 100.0 5.8E-73 1.3E-77 548.8 27.8 289 133-424 2-304 (306)
18 KOG0559 Dihydrolipoamide succi 100.0 1.2E-71 2.6E-76 523.7 24.8 379 1-425 77-455 (457)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 1.5E-60 3.2E-65 447.0 21.7 228 194-425 3-231 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 6.8E-48 1.5E-52 403.1 28.9 221 196-418 116-349 (1228)
21 PRK13757 chloramphenicol acety 100.0 1.6E-27 3.5E-32 220.2 19.8 181 218-419 30-214 (219)
22 PF00302 CAT: Chloramphenicol 100.0 6E-27 1.3E-31 215.3 21.3 178 216-414 23-206 (206)
23 COG4845 Chloramphenicol O-acet 99.9 2.3E-22 4.9E-27 177.7 18.5 188 216-424 26-218 (219)
24 PF00364 Biotin_lipoyl: Biotin 99.7 6E-18 1.3E-22 130.6 7.5 70 1-71 5-74 (74)
25 PRK14875 acetoin dehydrogenase 99.7 7.4E-17 1.6E-21 161.7 11.8 71 1-72 7-77 (371)
26 PRK06748 hypothetical protein; 99.7 2.2E-16 4.8E-21 122.9 9.8 62 10-72 12-74 (83)
27 PRK05889 putative acetyl-CoA c 99.6 2.2E-14 4.8E-19 109.8 9.6 61 10-71 10-70 (71)
28 PRK11892 pyruvate dehydrogenas 99.6 6.5E-14 1.4E-18 143.7 15.3 78 1-78 7-84 (464)
29 cd06663 Biotinyl_lipoyl_domain 99.5 1.1E-13 2.4E-18 106.5 10.2 70 1-71 4-73 (73)
30 COG0511 AccB Biotin carboxyl c 99.5 4.4E-14 9.6E-19 122.4 8.2 62 10-72 78-139 (140)
31 PF02817 E3_binding: e3 bindin 99.5 4.5E-14 9.8E-19 93.9 3.5 38 132-169 2-39 (39)
32 PRK08225 acetyl-CoA carboxylas 99.5 4.1E-13 8.8E-18 102.5 9.2 60 11-71 10-69 (70)
33 PRK11854 aceF pyruvate dehydro 99.4 1.2E-12 2.7E-17 139.9 10.8 71 1-74 7-77 (633)
34 PRK06549 acetyl-CoA carboxylas 99.4 1.8E-12 3.8E-17 110.0 9.3 62 9-71 68-129 (130)
35 TIGR02927 SucB_Actino 2-oxoglu 99.4 1.8E-12 3.9E-17 137.3 10.3 73 1-74 7-79 (590)
36 PRK05641 putative acetyl-CoA c 99.3 5.6E-12 1.2E-16 110.3 9.0 62 9-71 91-152 (153)
37 PRK07051 hypothetical protein; 99.3 1.5E-11 3.3E-16 96.3 9.1 62 10-72 11-79 (80)
38 cd06850 biotinyl_domain The bi 99.3 2.7E-11 5.9E-16 91.0 9.2 62 9-71 6-67 (67)
39 PLN02983 biotin carboxyl carri 99.3 1.9E-11 4E-16 113.8 8.8 61 10-71 205-272 (274)
40 TIGR00531 BCCP acetyl-CoA carb 99.2 2.2E-11 4.8E-16 107.4 8.6 60 11-71 89-155 (156)
41 PRK11855 dihydrolipoamide acet 99.2 2.5E-11 5.5E-16 128.1 10.6 72 1-74 7-78 (547)
42 TIGR01348 PDHac_trf_long pyruv 99.2 5.2E-11 1.1E-15 125.3 10.5 71 1-73 5-75 (546)
43 PRK06302 acetyl-CoA carboxylas 99.2 5.5E-11 1.2E-15 104.8 8.6 60 11-71 88-154 (155)
44 PRK14042 pyruvate carboxylase 99.2 1.1E-10 2.4E-15 122.8 9.8 62 10-72 533-594 (596)
45 cd06849 lipoyl_domain Lipoyl d 99.1 1.2E-09 2.7E-14 82.4 10.4 70 1-71 5-74 (74)
46 TIGR02712 urea_carbox urea car 99.0 6.3E-10 1.4E-14 126.4 9.5 61 10-71 1140-1200(1201)
47 TIGR01108 oadA oxaloacetate de 99.0 6.3E-10 1.4E-14 117.5 7.8 58 10-68 525-582 (582)
48 PRK14040 oxaloacetate decarbox 99.0 1.5E-09 3.3E-14 114.7 9.5 61 10-71 532-592 (593)
49 TIGR01235 pyruv_carbox pyruvat 98.9 2.6E-09 5.6E-14 120.4 9.3 61 10-71 1082-1142(1143)
50 PRK09282 pyruvate carboxylase 98.8 9.2E-09 2E-13 109.0 9.1 61 10-71 530-590 (592)
51 COG4770 Acetyl/propionyl-CoA c 98.8 9.2E-09 2E-13 104.5 7.4 62 10-72 583-644 (645)
52 PRK12999 pyruvate carboxylase; 98.7 2.6E-08 5.5E-13 112.9 9.1 61 10-71 1084-1144(1146)
53 COG1038 PycA Pyruvate carboxyl 98.6 4E-08 8.6E-13 103.0 6.7 66 4-71 1082-1147(1149)
54 KOG0369 Pyruvate carboxylase [ 98.4 5.5E-07 1.2E-11 92.9 7.2 65 5-71 1110-1174(1176)
55 cd06848 GCS_H Glycine cleavage 98.3 1.1E-06 2.3E-11 71.3 5.9 48 11-58 29-77 (96)
56 TIGR03077 not_gcvH glycine cle 98.2 4.5E-06 9.8E-11 69.0 6.3 47 11-57 30-77 (110)
57 PRK00624 glycine cleavage syst 98.0 1.1E-05 2.3E-10 67.2 6.3 44 11-54 32-76 (114)
58 KOG0238 3-Methylcrotonyl-CoA c 98.0 5.4E-06 1.2E-10 83.5 4.3 60 11-71 610-669 (670)
59 PRK13380 glycine cleavage syst 98.0 1E-05 2.2E-10 70.3 5.4 47 11-57 44-91 (144)
60 PRK14843 dihydrolipoamide acet 97.8 9.1E-06 2E-10 80.9 2.7 43 131-173 4-46 (347)
61 PRK09783 copper/silver efflux 97.8 7.5E-05 1.6E-09 76.5 9.4 66 9-75 130-244 (409)
62 TIGR00998 8a0101 efflux pump m 97.8 6.7E-05 1.5E-09 74.5 8.0 35 40-75 205-239 (334)
63 KOG0368 Acetyl-CoA carboxylase 97.7 4.8E-05 1E-09 84.7 6.7 64 8-73 691-754 (2196)
64 PRK10559 p-hydroxybenzoic acid 97.7 8.4E-05 1.8E-09 73.2 7.4 65 9-74 54-188 (310)
65 PRK01202 glycine cleavage syst 97.7 0.00012 2.5E-09 62.5 7.2 61 11-72 37-105 (127)
66 TIGR01730 RND_mfp RND family e 97.7 7.8E-05 1.7E-09 73.3 6.3 65 9-74 33-168 (322)
67 PRK10476 multidrug resistance 97.6 0.00011 2.5E-09 73.4 7.3 35 40-75 209-243 (346)
68 TIGR00527 gcvH glycine cleavag 97.6 0.00011 2.4E-09 62.5 5.1 46 11-56 36-82 (127)
69 PRK15136 multidrug efflux syst 97.5 0.00025 5.5E-09 72.2 7.3 35 40-75 216-250 (390)
70 PRK09578 periplasmic multidrug 97.4 0.00036 7.7E-09 70.9 7.2 65 9-74 70-207 (385)
71 PRK03598 putative efflux pump 97.4 0.00031 6.7E-09 69.8 6.5 34 40-74 204-237 (331)
72 PRK15030 multidrug efflux syst 97.4 0.00052 1.1E-08 70.0 8.0 65 9-74 72-209 (397)
73 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00021 4.7E-09 50.4 3.6 29 9-37 9-37 (50)
74 PRK09859 multidrug efflux syst 97.3 0.00068 1.5E-08 68.9 7.6 65 9-74 68-205 (385)
75 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00066 1.4E-08 47.9 5.1 34 39-73 2-35 (50)
76 PF01597 GCV_H: Glycine cleava 97.2 0.00069 1.5E-08 57.3 6.2 44 11-54 31-75 (122)
77 PRK11578 macrolide transporter 97.1 0.0014 3E-08 66.2 7.7 27 9-35 68-94 (370)
78 PRK11556 multidrug efflux syst 97.1 0.0011 2.3E-08 68.2 6.8 64 9-73 94-230 (415)
79 COG0509 GcvH Glycine cleavage 97.1 0.0009 2E-08 56.5 4.9 44 11-54 39-83 (131)
80 PF12700 HlyD_2: HlyD family s 96.9 0.00067 1.5E-08 66.8 3.3 26 9-35 28-53 (328)
81 TIGR02971 heterocyst_DevB ABC 96.8 0.0027 5.8E-08 62.9 6.7 32 41-74 206-237 (327)
82 PRK12784 hypothetical protein; 96.7 0.013 2.9E-07 44.4 7.9 64 9-73 12-76 (84)
83 TIGR03309 matur_yqeB selenium- 96.5 0.0092 2E-07 56.3 7.4 55 10-71 172-226 (256)
84 TIGR00999 8a0102 Membrane Fusi 96.4 0.0077 1.7E-07 57.5 6.9 35 39-74 88-122 (265)
85 PF13375 RnfC_N: RnfC Barrel s 96.3 0.0063 1.4E-07 49.6 4.8 44 11-55 39-82 (101)
86 PRK05889 putative acetyl-CoA c 96.2 0.0097 2.1E-07 45.2 5.0 32 41-73 4-35 (71)
87 COG1566 EmrA Multidrug resista 96.0 0.021 4.5E-07 57.0 7.5 34 41-75 210-243 (352)
88 TIGR01843 type_I_hlyD type I s 95.9 0.028 6E-07 57.4 8.1 33 41-74 273-306 (423)
89 PRK06748 hypothetical protein; 95.7 0.019 4.1E-07 45.0 4.7 32 41-73 6-37 (83)
90 PRK08225 acetyl-CoA carboxylas 95.6 0.016 3.4E-07 43.8 3.8 26 9-34 45-70 (70)
91 cd06253 M14_ASTE_ASPA_like_3 A 95.5 0.049 1.1E-06 53.4 8.0 56 13-71 239-297 (298)
92 cd06250 M14_PaAOTO_like An unc 95.3 0.054 1.2E-06 54.5 7.7 58 11-71 297-358 (359)
93 cd06251 M14_ASTE_ASPA_like_1 A 95.3 0.063 1.4E-06 52.3 8.0 56 13-71 229-286 (287)
94 cd06252 M14_ASTE_ASPA_like_2 A 94.8 0.11 2.4E-06 51.3 8.2 59 11-72 252-314 (316)
95 cd06850 biotinyl_domain The bi 94.8 0.049 1.1E-06 40.0 4.4 31 42-73 2-32 (67)
96 PF05896 NQRA: Na(+)-transloca 94.8 0.033 7.2E-07 52.8 4.2 42 11-55 38-81 (257)
97 COG0511 AccB Biotin carboxyl c 94.7 0.05 1.1E-06 47.2 4.7 34 39-73 70-103 (140)
98 COG3608 Predicted deacylase [G 94.5 0.11 2.3E-06 51.2 6.9 61 9-72 262-325 (331)
99 TIGR02994 ectoine_eutE ectoine 94.4 0.14 3.1E-06 50.7 7.7 56 13-71 265-324 (325)
100 PF13437 HlyD_3: HlyD family s 94.3 0.066 1.4E-06 43.5 4.4 32 42-74 2-33 (105)
101 PRK07051 hypothetical protein; 93.9 0.088 1.9E-06 40.9 4.1 26 9-34 54-79 (80)
102 PF09891 DUF2118: Uncharacteri 93.6 0.11 2.4E-06 45.2 4.7 45 10-54 88-133 (150)
103 PRK06549 acetyl-CoA carboxylas 93.4 0.15 3.3E-06 43.5 5.0 34 39-73 61-94 (130)
104 cd06254 M14_ASTE_ASPA_like_4 A 93.2 0.2 4.4E-06 48.8 6.5 55 11-68 231-287 (288)
105 PF07247 AATase: Alcohol acety 93.1 3.9 8.4E-05 42.6 16.2 173 223-417 252-480 (480)
106 TIGR01936 nqrA NADH:ubiquinone 93.0 0.13 2.9E-06 53.0 5.0 44 11-55 38-81 (447)
107 KOG0559 Dihydrolipoamide succi 92.5 0.89 1.9E-05 44.8 9.3 28 9-36 122-149 (457)
108 PRK05641 putative acetyl-CoA c 92.3 0.24 5.2E-06 43.5 4.9 33 39-72 84-116 (153)
109 TIGR02946 acyl_WS_DGAT acyltra 92.2 2.8 6.1E-05 43.1 13.6 165 223-419 232-441 (446)
110 PF00364 Biotin_lipoyl: Biotin 92.2 0.26 5.6E-06 37.6 4.4 33 41-74 2-40 (74)
111 PRK05352 Na(+)-translocating N 92.1 0.18 3.9E-06 52.2 4.6 43 11-54 39-81 (448)
112 PRK10476 multidrug resistance 91.7 0.32 6.9E-06 48.6 5.8 40 31-73 42-81 (346)
113 PF00529 HlyD: HlyD family sec 91.7 0.19 4.2E-06 48.7 4.1 33 40-73 2-34 (305)
114 PF00529 HlyD: HlyD family sec 91.7 0.13 2.8E-06 50.0 2.8 29 9-37 8-36 (305)
115 TIGR01235 pyruv_carbox pyruvat 91.2 0.41 8.8E-06 55.2 6.5 61 11-73 1047-1107(1143)
116 TIGR00998 8a0101 efflux pump m 90.9 0.3 6.4E-06 48.4 4.6 34 39-73 42-75 (334)
117 TIGR01945 rnfC electron transp 90.8 0.25 5.5E-06 51.0 4.1 43 11-54 40-82 (435)
118 PRK11556 multidrug efflux syst 90.4 0.54 1.2E-05 48.3 6.1 60 12-73 61-120 (415)
119 TIGR02971 heterocyst_DevB ABC 90.4 0.45 9.7E-06 47.0 5.3 42 31-73 5-49 (327)
120 PF07831 PYNP_C: Pyrimidine nu 90.3 0.26 5.7E-06 37.8 2.8 30 8-37 28-57 (75)
121 KOG3373 Glycine cleavage syste 90.2 0.19 4.2E-06 43.8 2.1 39 19-57 89-127 (172)
122 PRK11578 macrolide transporter 90.1 0.67 1.5E-05 46.7 6.4 59 12-72 35-93 (370)
123 COG1726 NqrA Na+-transporting 89.8 0.4 8.7E-06 47.2 4.2 40 15-57 42-83 (447)
124 TIGR01730 RND_mfp RND family e 89.4 0.7 1.5E-05 45.1 5.8 39 32-72 20-58 (322)
125 PRK09578 periplasmic multidrug 89.3 0.86 1.9E-05 46.2 6.5 56 15-72 40-95 (385)
126 PRK09859 multidrug efflux syst 89.2 0.91 2E-05 46.1 6.6 58 13-72 36-93 (385)
127 COG4656 RnfC Predicted NADH:ub 88.8 0.38 8.3E-06 49.8 3.4 39 14-54 45-83 (529)
128 PF12700 HlyD_2: HlyD family s 88.3 0.48 1.1E-05 46.4 3.8 39 31-73 15-53 (328)
129 cd06255 M14_ASTE_ASPA_like_5 A 88.3 1.6 3.4E-05 42.7 7.3 41 13-53 241-283 (293)
130 TIGR01000 bacteriocin_acc bact 88.3 0.93 2E-05 47.2 6.1 40 33-73 53-92 (457)
131 TIGR01843 type_I_hlyD type I s 88.2 0.84 1.8E-05 46.5 5.6 42 31-73 35-76 (423)
132 PRK03598 putative efflux pump 87.8 0.73 1.6E-05 45.7 4.8 40 31-73 37-76 (331)
133 PRK05035 electron transport co 87.7 0.49 1.1E-05 51.7 3.6 43 11-54 46-88 (695)
134 PRK10559 p-hydroxybenzoic acid 87.6 0.71 1.5E-05 45.5 4.4 34 39-73 47-80 (310)
135 PRK15136 multidrug efflux syst 87.2 0.86 1.9E-05 46.4 4.9 34 39-73 61-94 (390)
136 TIGR03794 NHPM_micro_HlyD NHPM 87.1 1.1 2.3E-05 46.1 5.6 37 36-73 55-91 (421)
137 PF13437 HlyD_3: HlyD family s 86.9 1.4 3E-05 35.6 5.1 28 9-36 6-33 (105)
138 TIGR03794 NHPM_micro_HlyD NHPM 86.8 0.65 1.4E-05 47.7 3.8 29 9-37 65-93 (421)
139 PRK15030 multidrug efflux syst 86.7 1.4 3.1E-05 44.9 6.2 43 28-72 55-97 (397)
140 TIGR01000 bacteriocin_acc bact 85.8 0.74 1.6E-05 47.9 3.7 30 8-37 65-94 (457)
141 PF02749 QRPTase_N: Quinolinat 84.8 0.89 1.9E-05 35.9 2.9 24 13-36 46-69 (88)
142 COG4072 Uncharacterized protei 84.5 2.2 4.9E-05 36.1 5.2 45 9-53 98-143 (161)
143 PLN02226 2-oxoglutarate dehydr 84.4 1.1 2.5E-05 46.3 4.1 29 8-36 140-168 (463)
144 TIGR00531 BCCP acetyl-CoA carb 84.1 1.5 3.2E-05 38.7 4.2 33 40-73 81-120 (156)
145 PLN02983 biotin carboxyl carri 84.0 1.4 3.1E-05 41.8 4.3 33 40-73 198-237 (274)
146 PRK14042 pyruvate carboxylase 83.4 1.6 3.5E-05 46.8 4.9 33 40-73 526-558 (596)
147 PF04952 AstE_AspA: Succinylgl 82.9 3.3 7.2E-05 40.1 6.6 57 13-72 230-290 (292)
148 PRK09439 PTS system glucose-sp 82.9 3.3 7.2E-05 37.0 6.0 41 27-71 48-123 (169)
149 PRK09783 copper/silver efflux 81.9 3 6.4E-05 42.8 6.1 43 29-72 112-156 (409)
150 cd00210 PTS_IIA_glc PTS_IIA, P 81.6 4.4 9.5E-05 34.3 6.0 41 27-71 26-101 (124)
151 PRK06302 acetyl-CoA carboxylas 81.0 2.3 5E-05 37.5 4.2 34 39-73 79-119 (155)
152 PF00358 PTS_EIIA_1: phosphoen 80.8 3 6.4E-05 35.7 4.7 42 26-71 29-105 (132)
153 TIGR01108 oadA oxaloacetate de 80.5 2.3 5E-05 45.6 4.8 33 40-73 518-550 (582)
154 TIGR00164 PS_decarb_rel phosph 80.3 4.2 9.1E-05 37.0 5.9 52 12-69 131-182 (189)
155 COG2190 NagE Phosphotransferas 80.1 6.3 0.00014 34.6 6.5 28 11-38 86-113 (156)
156 PRK12784 hypothetical protein; 79.9 2.4 5.3E-05 32.4 3.4 41 36-77 1-42 (84)
157 cd06663 Biotinyl_lipoyl_domain 79.8 2.3 5E-05 31.9 3.4 25 9-33 49-73 (73)
158 TIGR00830 PTBA PTS system, glu 79.7 5.3 0.00011 33.7 5.8 17 54-71 85-101 (121)
159 COG0845 AcrA Membrane-fusion p 79.6 1.7 3.7E-05 42.6 3.3 23 50-73 77-99 (372)
160 COG2190 NagE Phosphotransferas 78.5 5 0.00011 35.3 5.4 17 54-71 92-108 (156)
161 PRK14875 acetoin dehydrogenase 78.3 2.6 5.7E-05 41.8 4.3 29 9-37 52-80 (371)
162 COG0845 AcrA Membrane-fusion p 78.0 6.2 0.00014 38.5 6.8 27 9-35 73-99 (372)
163 cd00210 PTS_IIA_glc PTS_IIA, P 77.6 2.1 4.6E-05 36.2 2.8 26 11-36 79-104 (124)
164 PTZ00144 dihydrolipoamide succ 77.3 2.8 6E-05 43.0 4.1 29 8-36 93-121 (418)
165 PRK09439 PTS system glucose-sp 77.3 4.7 0.0001 36.1 5.0 27 11-37 101-127 (169)
166 TIGR00830 PTBA PTS system, glu 77.0 2.2 4.7E-05 36.0 2.7 27 11-37 79-105 (121)
167 PF02666 PS_Dcarbxylase: Phosp 76.6 4.8 0.0001 37.0 5.2 57 11-70 145-202 (202)
168 PRK09294 acyltransferase PapA5 76.4 88 0.0019 31.7 15.0 19 250-268 229-247 (416)
169 PRK14040 oxaloacetate decarbox 76.3 3.6 7.8E-05 44.3 4.8 34 39-73 524-557 (593)
170 PF00668 Condensation: Condens 75.6 43 0.00092 31.4 11.8 31 390-420 129-159 (301)
171 PRK09282 pyruvate carboxylase 75.5 4 8.7E-05 43.9 4.9 33 40-73 523-555 (592)
172 PRK05704 dihydrolipoamide succ 75.1 3.8 8.1E-05 42.0 4.4 30 8-37 51-80 (407)
173 COG4770 Acetyl/propionyl-CoA c 75.0 3.9 8.5E-05 43.0 4.4 32 41-73 577-608 (645)
174 TIGR01347 sucB 2-oxoglutarate 75.0 3.8 8.3E-05 41.9 4.4 29 8-36 49-77 (403)
175 PRK05305 phosphatidylserine de 74.9 7 0.00015 36.1 5.7 54 11-70 150-204 (206)
176 PF00358 PTS_EIIA_1: phosphoen 74.2 2.1 4.6E-05 36.6 2.0 27 11-37 83-109 (132)
177 cd06849 lipoyl_domain Lipoyl d 74.1 4 8.6E-05 29.4 3.3 25 9-33 50-74 (74)
178 COG1566 EmrA Multidrug resista 72.9 5.4 0.00012 40.0 4.8 34 39-73 53-86 (352)
179 PLN02528 2-oxoisovalerate dehy 71.2 5.4 0.00012 41.0 4.5 31 7-37 46-76 (416)
180 COG0508 AceF Pyruvate/2-oxoglu 70.6 5.4 0.00012 40.8 4.3 33 7-39 50-82 (404)
181 TIGR02712 urea_carbox urea car 70.4 5.5 0.00012 46.5 4.8 34 39-73 1132-1165(1201)
182 TIGR01995 PTS-II-ABC-beta PTS 68.6 6.2 0.00013 42.7 4.4 27 11-37 543-569 (610)
183 PRK12999 pyruvate carboxylase; 68.6 9.4 0.0002 44.4 6.1 33 40-73 1077-1109(1146)
184 TIGR03309 matur_yqeB selenium- 65.1 8.4 0.00018 36.7 4.0 33 39-73 164-196 (256)
185 COG0157 NadC Nicotinate-nucleo 64.5 6.9 0.00015 37.7 3.3 23 13-35 65-87 (280)
186 TIGR01349 PDHac_trf_mito pyruv 63.5 9.6 0.00021 39.4 4.5 30 8-37 48-78 (435)
187 PRK14844 bifunctional DNA-dire 62.7 13 0.00029 46.1 5.9 20 15-34 2423-2442(2836)
188 TIGR02645 ARCH_P_rylase putati 61.1 15 0.00033 38.4 5.4 41 32-73 406-470 (493)
189 PRK09824 PTS system beta-gluco 60.5 17 0.00036 39.5 5.8 26 11-36 559-584 (627)
190 TIGR00999 8a0102 Membrane Fusi 60.1 18 0.0004 34.1 5.6 26 9-34 95-120 (265)
191 PRK03934 phosphatidylserine de 60.0 16 0.00035 35.2 5.1 55 12-71 211-265 (265)
192 PRK11892 pyruvate dehydrogenas 58.9 12 0.00026 39.0 4.3 31 7-37 50-81 (464)
193 PLN02663 hydroxycinnamoyl-CoA: 58.9 11 0.00023 38.8 4.0 30 390-419 145-174 (431)
194 PF02458 Transferase: Transfer 58.3 12 0.00025 38.3 4.1 30 390-419 147-176 (432)
195 PLN00140 alcohol acetyltransfe 58.0 11 0.00024 39.0 3.8 30 390-419 148-177 (444)
196 COG1155 NtpA Archaeal/vacuolar 57.0 28 0.0006 36.6 6.4 57 18-76 122-180 (588)
197 cd06255 M14_ASTE_ASPA_like_5 A 56.5 15 0.00033 35.8 4.3 34 39-74 231-264 (293)
198 PF01551 Peptidase_M23: Peptid 56.5 18 0.00039 28.5 4.1 23 50-73 52-74 (96)
199 cd01134 V_A-ATPase_A V/A-type 56.4 35 0.00075 34.3 6.8 54 17-73 54-110 (369)
200 cd06253 M14_ASTE_ASPA_like_3 A 56.1 14 0.0003 36.2 4.0 34 39-74 229-262 (298)
201 PLN02481 Omega-hydroxypalmitat 55.9 13 0.00029 38.2 4.1 30 390-419 158-187 (436)
202 PRK11856 branched-chain alpha- 54.6 15 0.00033 37.6 4.2 30 8-37 51-80 (411)
203 KOG0238 3-Methylcrotonyl-CoA c 54.6 11 0.00023 39.3 2.9 31 42-73 604-634 (670)
204 PRK10255 PTS system N-acetyl g 54.3 17 0.00037 39.5 4.6 28 11-38 579-606 (648)
205 PRK08072 nicotinate-nucleotide 54.2 14 0.00031 35.7 3.7 22 14-35 66-87 (277)
206 cd01572 QPRTase Quinolinate ph 54.1 16 0.00034 35.3 3.9 22 52-74 61-82 (268)
207 PRK04350 thymidine phosphoryla 54.1 24 0.00052 37.0 5.4 40 33-73 399-462 (490)
208 cd06251 M14_ASTE_ASPA_like_1 A 53.9 18 0.00038 35.2 4.3 36 37-74 217-252 (287)
209 cd06254 M14_ASTE_ASPA_like_4 A 53.4 18 0.0004 35.1 4.3 35 38-74 222-256 (288)
210 TIGR03327 AMP_phos AMP phospho 53.2 24 0.00052 37.0 5.3 40 33-73 408-471 (500)
211 TIGR02643 T_phosphoryl thymidi 53.1 23 0.0005 36.5 5.1 38 35-73 335-403 (437)
212 PRK06543 nicotinate-nucleotide 52.4 16 0.00035 35.4 3.7 23 13-35 66-88 (281)
213 TIGR02644 Y_phosphoryl pyrimid 52.3 25 0.00054 36.0 5.2 40 33-73 327-397 (405)
214 PF01551 Peptidase_M23: Peptid 52.2 13 0.00028 29.3 2.6 25 12-36 51-75 (96)
215 TIGR01042 V-ATPase_V1_A V-type 51.5 35 0.00075 36.5 6.2 54 17-73 123-179 (591)
216 cd06250 M14_PaAOTO_like An unc 51.3 20 0.00044 36.1 4.4 34 40-75 290-323 (359)
217 PRK03140 phosphatidylserine de 51.2 20 0.00042 34.4 4.1 50 19-70 208-257 (259)
218 PRK10255 PTS system N-acetyl g 51.0 28 0.00061 37.9 5.6 41 27-71 526-601 (648)
219 PRK06096 molybdenum transport 51.0 17 0.00038 35.3 3.7 21 14-34 63-83 (284)
220 TIGR02994 ectoine_eutE ectoine 50.9 21 0.00045 35.5 4.3 33 39-73 255-287 (325)
221 PRK05820 deoA thymidine phosph 50.8 13 0.00028 38.4 2.9 27 8-34 377-403 (440)
222 COG1038 PycA Pyruvate carboxyl 50.8 13 0.00028 40.9 2.9 30 42-72 1082-1111(1149)
223 PLN03157 spermidine hydroxycin 50.6 18 0.00038 37.5 4.0 30 390-419 146-175 (447)
224 PLN02744 dihydrolipoyllysine-r 50.6 17 0.00038 38.5 3.9 30 7-36 160-190 (539)
225 PRK09016 quinolinate phosphori 50.5 18 0.00039 35.4 3.7 22 14-35 87-108 (296)
226 KOG0369 Pyruvate carboxylase [ 50.5 14 0.00029 39.9 3.0 30 42-72 1109-1138(1176)
227 PRK05742 nicotinate-nucleotide 50.3 18 0.00039 35.0 3.7 22 14-35 68-89 (277)
228 PRK06078 pyrimidine-nucleoside 49.8 27 0.00058 36.1 5.0 40 33-73 329-399 (434)
229 PF07247 AATase: Alcohol acety 49.6 18 0.00038 37.7 3.8 33 389-421 140-172 (480)
230 PRK05820 deoA thymidine phosph 49.6 29 0.00062 35.9 5.2 38 35-73 336-404 (440)
231 cd01573 modD_like ModD; Quinol 49.6 19 0.00041 34.8 3.7 21 14-34 58-78 (272)
232 PRK04350 thymidine phosphoryla 49.0 16 0.00035 38.2 3.3 31 5-35 432-462 (490)
233 PRK07428 nicotinate-nucleotide 49.0 19 0.00042 35.0 3.7 22 14-35 74-95 (288)
234 PRK07896 nicotinate-nucleotide 48.7 20 0.00043 35.0 3.7 23 13-35 77-99 (289)
235 PRK06978 nicotinate-nucleotide 48.7 20 0.00043 35.0 3.7 23 13-35 83-105 (294)
236 TIGR02643 T_phosphoryl thymidi 48.7 15 0.00033 37.8 3.0 28 8-35 376-403 (437)
237 PF06898 YqfD: Putative stage 48.6 28 0.0006 35.5 4.9 52 10-69 167-225 (385)
238 PRK05848 nicotinate-nucleotide 48.3 20 0.00044 34.6 3.7 21 14-34 60-80 (273)
239 cd06252 M14_ASTE_ASPA_like_2 A 48.2 35 0.00075 33.7 5.4 36 37-74 242-277 (316)
240 cd01568 QPRTase_NadC Quinolina 47.7 21 0.00045 34.4 3.7 23 13-35 58-80 (269)
241 PRK09824 PTS system beta-gluco 47.6 33 0.00072 37.2 5.5 41 27-71 506-581 (627)
242 TIGR03327 AMP_phos AMP phospho 47.5 17 0.00037 38.1 3.2 31 5-35 441-471 (500)
243 PLN02716 nicotinate-nucleotide 47.4 21 0.00046 35.0 3.7 23 13-35 79-101 (308)
244 PRK06078 pyrimidine-nucleoside 47.2 16 0.00034 37.7 2.9 30 8-37 372-401 (434)
245 TIGR01995 PTS-II-ABC-beta PTS 46.8 37 0.0008 36.8 5.7 41 27-71 490-565 (610)
246 PRK06106 nicotinate-nucleotide 45.8 24 0.00051 34.3 3.7 23 13-35 71-93 (281)
247 COG4908 Uncharacterized protei 45.6 3.6E+02 0.0077 27.7 12.4 64 249-323 237-317 (439)
248 PF13375 RnfC_N: RnfC Barrel s 45.4 40 0.00086 27.4 4.4 50 20-71 11-61 (101)
249 PRK08385 nicotinate-nucleotide 45.3 24 0.00052 34.2 3.7 20 15-34 61-80 (278)
250 TIGR01334 modD putative molybd 45.2 24 0.00052 34.2 3.7 18 54-72 65-82 (277)
251 TIGR00163 PS_decarb phosphatid 44.9 23 0.00051 33.4 3.5 48 21-70 189-236 (238)
252 PF07831 PYNP_C: Pyrimidine nu 44.1 29 0.00064 26.5 3.3 29 45-76 30-58 (75)
253 COG2258 Uncharacterized protei 44.0 29 0.00063 32.1 3.8 68 2-72 79-161 (210)
254 TIGR00078 nadC nicotinate-nucl 42.7 28 0.00061 33.5 3.7 21 15-35 57-77 (265)
255 PRK11536 6-N-hydroxylaminopuri 42.6 23 0.0005 33.2 3.0 67 3-72 83-164 (223)
256 PF05896 NQRA: Na(+)-transloca 42.5 21 0.00045 34.1 2.7 32 39-71 29-60 (257)
257 COG1725 Predicted transcriptio 41.2 10 0.00022 32.2 0.3 19 136-154 35-53 (125)
258 KOG1668 Elongation factor 1 be 40.6 16 0.00034 34.2 1.5 27 15-41 181-207 (231)
259 COG3608 Predicted deacylase [G 40.4 51 0.0011 32.7 5.1 43 28-74 247-289 (331)
260 PRK14698 V-type ATP synthase s 39.4 62 0.0013 37.3 6.2 53 18-73 124-179 (1017)
261 CHL00117 rpoC2 RNA polymerase 39.4 35 0.00076 40.3 4.3 37 15-51 405-449 (1364)
262 cd06910 M14_ASTE_ASPA_like_7 A 39.1 46 0.00099 32.0 4.6 45 18-70 226-271 (272)
263 COG4072 Uncharacterized protei 38.9 69 0.0015 27.4 4.9 38 24-73 87-124 (161)
264 PRK10871 nlpD lipoprotein NlpD 38.6 18 0.00039 35.7 1.7 21 15-35 271-291 (319)
265 TIGR02876 spore_yqfD sporulati 38.1 65 0.0014 32.7 5.7 53 10-69 163-222 (382)
266 PRK00044 psd phosphatidylserin 38.1 38 0.00081 33.0 3.8 58 12-72 224-286 (288)
267 COG0213 DeoA Thymidine phospho 38.0 61 0.0013 33.1 5.3 40 33-73 330-400 (435)
268 PF06898 YqfD: Putative stage 37.2 40 0.00087 34.3 4.0 23 9-31 196-225 (385)
269 KOG0368 Acetyl-CoA carboxylase 36.3 48 0.001 39.2 4.6 50 21-71 667-716 (2196)
270 PRK06559 nicotinate-nucleotide 33.3 47 0.001 32.4 3.6 22 14-35 73-96 (290)
271 COG0213 DeoA Thymidine phospho 32.5 39 0.00086 34.5 3.0 28 8-35 373-400 (435)
272 PRK04192 V-type ATP synthase s 32.1 1E+02 0.0022 33.2 6.1 56 17-75 123-181 (586)
273 PRK08662 nicotinate phosphorib 32.0 48 0.0011 33.2 3.5 10 135-144 138-147 (343)
274 PF02749 QRPTase_N: Quinolinat 31.6 1E+02 0.0023 24.0 4.8 36 37-73 17-68 (88)
275 KOG0557 Dihydrolipoamide acety 31.1 45 0.00097 34.4 3.1 31 46-77 51-81 (470)
276 TIGR01043 ATP_syn_A_arch ATP s 30.9 1.1E+02 0.0023 33.0 6.0 53 18-73 121-176 (578)
277 TIGR02876 spore_yqfD sporulati 29.1 73 0.0016 32.4 4.4 24 9-32 193-223 (382)
278 smart00226 LMWPc Low molecular 29.0 38 0.00083 28.7 2.0 31 135-170 42-72 (140)
279 PRK02597 rpoC2 DNA-directed RN 28.9 71 0.0015 37.7 4.6 37 15-51 404-447 (1331)
280 PRK07188 nicotinate phosphorib 28.2 73 0.0016 32.0 4.1 22 53-75 75-96 (352)
281 PF09891 DUF2118: Uncharacteri 27.4 72 0.0016 27.9 3.4 44 22-77 74-117 (150)
282 PF01333 Apocytochr_F_C: Apocy 26.8 20 0.00044 29.6 -0.1 16 15-30 45-60 (118)
283 PTZ00403 phosphatidylserine de 25.1 83 0.0018 31.6 3.8 59 10-72 280-339 (353)
284 PRK11391 etp phosphotyrosine-p 24.5 58 0.0013 28.1 2.3 31 135-169 45-75 (144)
285 PF12728 HTH_17: Helix-turn-he 24.0 56 0.0012 22.3 1.8 35 137-174 16-50 (51)
286 PF03869 Arc: Arc-like DNA bin 23.8 2.6E+02 0.0056 19.4 6.4 48 216-272 2-49 (50)
287 PF07687 M20_dimer: Peptidase 23.3 84 0.0018 24.9 2.9 28 392-419 79-106 (111)
288 TIGR01764 excise DNA binding d 23.2 58 0.0012 21.5 1.7 32 138-172 17-48 (49)
289 PRK09822 lipopolysaccharide co 23.1 71 0.0015 30.0 2.6 113 161-277 6-122 (269)
290 cd00516 PRTase_typeII Phosphor 22.9 92 0.002 29.9 3.6 18 54-72 55-72 (281)
291 COG3453 Uncharacterized protei 22.0 89 0.0019 26.3 2.7 36 136-173 47-82 (130)
292 TIGR00164 PS_decarb_rel phosph 21.7 3.2E+02 0.0069 24.7 6.7 61 10-72 80-152 (189)
293 PRK10126 tyrosine phosphatase; 21.4 65 0.0014 27.8 2.0 31 135-169 45-75 (147)
294 cd01571 NAPRTase_B Nicotinate 21.2 1.1E+02 0.0023 30.1 3.7 20 55-75 58-77 (302)
295 PF01451 LMWPc: Low molecular 20.9 89 0.0019 26.3 2.8 32 135-170 46-77 (138)
296 PRK09294 acyltransferase PapA5 20.3 82 0.0018 32.0 2.8 26 392-417 113-138 (416)
No 1
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=2.9e-92 Score=722.88 Aligned_cols=421 Identities=83% Similarity=1.245 Sum_probs=338.8
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.+|++++|++.|++|++|+++.+++++...
T Consensus 117 mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~ 196 (539)
T PLN02744 117 MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGK 196 (539)
T ss_pred CCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEccCcccccc
Confidence 79999999999999999999999999999999999999999999999999999999993279999999988654443221
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC-CCCCCCCCcccChhHHhHHHHcCCCCCccccCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKP-SAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPN 159 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~ 159 (425)
+....++..+.+..+++. +.++.+.......+...+.+....+ .....+.++++||+||+||+||||||+.|+|||++
T Consensus 197 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V~GTGp~ 275 (539)
T PLN02744 197 FKDYKPSSSAAPAAPKAK-PSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPD 275 (539)
T ss_pred cccccccccccccccccc-CCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCCHHHCCCCCCC
Confidence 111111000000000000 0000000000000000111000000 11112335789999999999999999999999999
Q ss_pred CccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHH
Q 014404 160 GLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQL 239 (425)
Q Consensus 160 GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~ 239 (425)
|||+++||++|+.+.....+++.+. ....+....+++|+++|||.|+++|++|++++||||++.++|+|+|+++|+++
T Consensus 276 GRI~k~DV~a~~~~~~~~~~~~~~~--~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l 353 (539)
T PLN02744 276 GRIVKADIEDYLASGGKGATAPPST--DSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQL 353 (539)
T ss_pred CcccHHHHHHHhhccccccCCCCCc--ccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHH
Confidence 9999999999985322111111010 00111112356899999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHH
Q 014404 240 NSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVR 319 (425)
Q Consensus 240 ~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~ 319 (425)
++......|.|+||++||+||++.||++||.||++|+++.+++++++|||+||++++||++|||++++++++.||+++++
T Consensus 354 ~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~ 433 (539)
T PLN02744 354 NSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVK 433 (539)
T ss_pred HHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHH
Confidence 87654445789999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCeEEEeeCC-CCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecc
Q 014404 320 QLAQKAKDNSLKPQDYEGGTFTVTNLG-GPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDH 398 (425)
Q Consensus 320 ~l~~~a~~~~l~~~d~~~~t~tISnlg-~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DH 398 (425)
+|.+++|+|+|+++||+||||||||+| + ||+.+|+||||+||+|||++|++.++|++...+|++++|++|+|||||||
T Consensus 434 ~L~~kAr~~kL~~~dl~GGTfTISNlGg~-~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DH 512 (539)
T PLN02744 434 QLAQKARENSLKPEDYEGGTFTVSNLGGP-FGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDH 512 (539)
T ss_pred HHHHHHHcCCCChhhcCCceEEEeCCCcc-cccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecch
Confidence 999999999999999999999999998 7 99999999999999999999999999987434789999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhcCcccccC
Q 014404 399 RVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 399 RviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|+|||+++++||++|+++||||+.||+
T Consensus 513 RvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 513 RVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred hhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 999999999999999999999998875
No 2
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.1e-91 Score=705.71 Aligned_cols=396 Identities=33% Similarity=0.482 Sum_probs=333.3
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++| +.|++|++|+++.+.+++...
T Consensus 7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G-~~V~~G~~l~~i~~~~~~~~~ 85 (407)
T PRK05704 7 VPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG-DTVTVGQVLGRIDEGAAAGAA 85 (407)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCC-CEeCCCCEEEEEecCCccccc
Confidence 8999999999999999999999999999999999999999999999999999999999 799999999998654322110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
.++ +...++. .+ .+ . +.+. .+. .. ...+.+||+||+||+||||||++|+|||++|
T Consensus 86 ----~~~-------~~~~~~~-~~-~~------~--~~~~--~~~-~~-~~~~~asP~aR~lA~e~gidl~~v~gtG~~G 140 (407)
T PRK05704 86 ----AAA-------AAAAAAA-AA-AP------A--QAQA--AAA-AE-QSNDALSPAARKLAAENGLDASAVKGTGKGG 140 (407)
T ss_pred ----CCC-------CCCCCCC-CC-CC------C--CCCC--Ccc-CC-CccccCCchhhhHHhhcCCChhhCCCCCCCC
Confidence 000 0000000 00 00 0 0000 000 00 1135699999999999999999999999999
Q ss_pred ccchhhHHHHHHhcCCCCCCCCCCCCCC-C--CCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHH
Q 014404 161 LIVKADIEDYLASRGKEVPAKAPKGKDV-A--APALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRN 237 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk 237 (425)
||+++||++|+++.......++...... + .+....+.+|++++||.|+++|.+||+++||||++.++|+|+|+++|+
T Consensus 141 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~ 220 (407)
T PRK05704 141 RVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRK 220 (407)
T ss_pred cccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHH
Confidence 9999999999753211110000000000 0 011112457999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHH
Q 014404 238 QLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEE 317 (425)
Q Consensus 238 ~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~ 317 (425)
++++.+..+.|.|+||++||+||+++||++||.||++|+++.+++++++|||+||++++||++|||++++++|+.+|+++
T Consensus 221 ~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~ 300 (407)
T PRK05704 221 QYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKK 300 (407)
T ss_pred HHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHH
Confidence 99875554457899999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEec
Q 014404 318 VRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCD 397 (425)
Q Consensus 318 ~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~D 397 (425)
++++++++|+|+|+++|++||||||||+|+ ||+.+|+||||+||+|||++|++.++|++. +|++++|++|+||||||
T Consensus 301 ~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~-~G~~~~tpiIn~pq~aILgvG~i~~~pv~~--~g~i~~r~~~~lsls~D 377 (407)
T PRK05704 301 IAELAKKARDGKLSIEELTGGTFTITNGGV-FGSLMSTPIINPPQSAILGMHKIKERPVAV--NGQIVIRPMMYLALSYD 377 (407)
T ss_pred HHHHHHHHHcCCCChHHcCCceEEEecCCc-ccccceeccccCCcEEEEEcccceEEeEEE--CCEEEEEEEEEEEEEec
Confidence 999999999999999999999999999999 999999999999999999999999999874 78999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 398 HRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 398 HRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
||+|||+++|+||++|+++||||+.||+
T Consensus 378 HRviDGa~aa~Fl~~l~~~le~p~~ll~ 405 (407)
T PRK05704 378 HRIIDGKEAVGFLVTIKELLEDPERLLL 405 (407)
T ss_pred hhhhCcHHHHHHHHHHHHHhhCHHHHhh
Confidence 9999999999999999999999998874
No 3
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=1.8e-91 Score=702.52 Aligned_cols=396 Identities=32% Similarity=0.495 Sum_probs=333.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++| +.|++|++|+++.+.++. .
T Consensus 5 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG-~~v~vG~~l~~i~~~~~~-~- 81 (403)
T TIGR01347 5 VPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG-DTVESGQVLAILEEGNDA-T- 81 (403)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCC-CEeCCCCEEEEEecCCCC-c-
Confidence 8999999999999999999999999999999999999999999999999999999999 799999999998543221 0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
+..+++ . .++.+.+ ... + ..+.+ . . ...++.+||+||+||+|+||||+.|+|||++|
T Consensus 82 ------~~~~~~---~-~~~~~~~--~~~---~-~~~~~-----~-~-~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~G 138 (403)
T TIGR01347 82 ------AAPPAK---S-GEEKEET--PAA---S-AAAAP-----T-A-AANRPSLSPAARRLAKEHGIDLSAVPGTGVTG 138 (403)
T ss_pred ------cccccc---c-cCCCCCC--CCC---C-CCCCC-----c-C-ccccccCCchhhhHHHHcCCChhhCCCCCCCC
Confidence 000000 0 0000000 000 0 00000 0 1 12256799999999999999999999999999
Q ss_pred ccchhhHHHHHHhcCCC-CCCCCCCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHH
Q 014404 161 LIVKADIEDYLASRGKE-VPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQL 239 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~ 239 (425)
||+++||++|++..... .++..+....+..+....+.+|++++||.|+++|..||+++||||++.++|+|+|+++|+++
T Consensus 139 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~ 218 (403)
T TIGR01347 139 RVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRY 218 (403)
T ss_pred cccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHH
Confidence 99999999997532111 11000000000000111345799999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHH
Q 014404 240 NSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVR 319 (425)
Q Consensus 240 ~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~ 319 (425)
++.+..+.|.++||++||+||+++||++||.||++|+++.+++++++|||+||++++||++|||++++++|+.+|+++++
T Consensus 219 ~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~ 298 (403)
T TIGR01347 219 KEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIA 298 (403)
T ss_pred HhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHH
Confidence 87655555889999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEeccc
Q 014404 320 QLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHR 399 (425)
Q Consensus 320 ~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHR 399 (425)
++++++|+|+|+++||+||||||||+|+ ||+.+|+||||+||+|||++|++.++|++. +|++++|++|+||||||||
T Consensus 299 ~l~~~ar~gkL~~~d~~ggTfTISNlG~-~G~~~~tpiin~pq~aILgvG~i~~~pv~~--~g~i~~r~~m~lsLt~DHR 375 (403)
T TIGR01347 299 DLGKKARDGKLTLEDMTGGTFTITNGGV-FGSLMSTPIINPPQSAILGMHGIKERPVAV--NGQIEIRPMMYLALSYDHR 375 (403)
T ss_pred HHHHHHHcCCCChhhcCCceEEEecCCc-CcccceeccccCCceEEEecccceEEEEEE--CCeEEEEEEEEEEEEecch
Confidence 9999999999999999999999999999 999999999999999999999999999874 6899999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcCcccccC
Q 014404 400 VIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 400 viDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
+|||+++|+||++|+++||+|..||+
T Consensus 376 viDGa~aa~Fl~~l~~~le~p~~ll~ 401 (403)
T TIGR01347 376 LIDGKEAVTFLVTIKELLEDPRRLLL 401 (403)
T ss_pred hhChHHHHHHHHHHHHHhcCHHHHHh
Confidence 99999999999999999999998874
No 4
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=6.7e-90 Score=722.72 Aligned_cols=420 Identities=29% Similarity=0.424 Sum_probs=331.7
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++| +.|++|++|+++.+.+++...
T Consensus 140 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G-~~v~vG~~l~~i~~~~~~~~~ 218 (590)
T TIGR02927 140 MPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEED-DTVDVGAEIAKIGDAGAAAAE 218 (590)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCC-CEecCCCEEEEEecCCCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999 799999999998654332211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCC--CCccCCCC--CCCCCCCC-CC-CCCCCCCCcccChhHHhHHHHcCCCCCccc
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPK--QEEVEKPI--STSEPKAS-KP-SAASPEDRLFASPVARNLAEEHNVSLSSIK 154 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~-~~-~~~~~~~~~~asP~aR~lA~e~gIdl~~v~ 154 (425)
.............++....+...... ......+. ..+.+... .. ....++.++++||+||+||+||||||++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~ 298 (590)
T TIGR02927 219 DAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVK 298 (590)
T ss_pred ccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCHHHCC
Confidence 00000000000000000000000000 00000000 00000000 00 011123467899999999999999999999
Q ss_pred cCCCCCccchhhHHHHHHhcCC--CCCCC-----CCCC--CCCC--CC---CCCccccccchhhhhhhhhccccccCccE
Q 014404 155 GTGPNGLIVKADIEDYLASRGK--EVPAK-----APKG--KDVA--AP---ALDYVDIPHSQIRKITASRLLFSKQTIPH 220 (425)
Q Consensus 155 gtG~~GrI~~~DV~~~~~~~~~--~~~~~-----~~~~--~~~~--~~---~~~~~~~~~s~~rk~~a~~m~~s~~~iP~ 220 (425)
|||++|||+++||++|+..... ..++. .+.. .... .+ ....+.+|+++|||.|+++|++||+++||
T Consensus 299 GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~~~iPh 378 (590)
T TIGR02927 299 GTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREALQASAQ 378 (590)
T ss_pred CCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHhccCCe
Confidence 9999999999999999854211 10110 0000 0000 01 01234679999999999999999999999
Q ss_pred EEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecC--CceeeeCccceEEEeecCCCe
Q 014404 221 YYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGL 298 (425)
Q Consensus 221 ~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~--~~i~~~~~i~i~~av~~~~gl 298 (425)
||++.++|+|+|+++|+++++.+....|.|+||++||+||++.||++||.||++|++ +.|++|+++||||||++++||
T Consensus 379 ~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL 458 (590)
T TIGR02927 379 LTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGL 458 (590)
T ss_pred EEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCc
Confidence 999999999999999999997554445789999999999999999999999999974 479999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeec
Q 014404 299 YVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPG 378 (425)
Q Consensus 299 ~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~ 378 (425)
++|||++++++||.+|++++++|.+++|+|+|+++||+||||||||+|+ ||+++|+||||+||+|||++|++.++|++.
T Consensus 459 ~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~-~G~~~~tpIIn~PqvaILgvG~i~~~pv~~ 537 (590)
T TIGR02927 459 LSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGS-EGALFDTPILIPPQAAILGTGAIVKRPRVI 537 (590)
T ss_pred EecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCC-CCccceeceecCCCeEEEEcccceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999885
Q ss_pred C-CCC--ceeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcCccc
Q 014404 379 L-GPD--QYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPES 422 (425)
Q Consensus 379 ~-~~g--~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ 422 (425)
. .+| .+++|++|+||||||||+|||++++|||++|+++||||..
T Consensus 538 ~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 538 TDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred ccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 2 233 4999999999999999999999999999999999999874
No 5
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=1.4e-88 Score=689.28 Aligned_cols=418 Identities=53% Similarity=0.872 Sum_probs=332.9
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCee-eeCCCEEEEEeccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEEEEDIP 79 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~-v~~g~~l~~~~~~~~~~~ 79 (425)
||++|++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++| +. |++|++|++|.+.+++..
T Consensus 4 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g-~~~v~vG~~l~~i~~~~~~~~ 82 (435)
T TIGR01349 4 MPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEG-TKDVPVNKPIAVLVEEKEDVA 82 (435)
T ss_pred cCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCC-CEEecCCCEEEEEeccCCccc
Confidence 8999999999999999999999999999999999999999999999999999999999 78 999999999865433221
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCC-CCC-CCccCCCC-CCCCCCCCCC-CCCCCCCCcccChhHHhHHHHcCCCCCcccc
Q 014404 80 KFKDYSPSVSDAGAAPAKEPSPPP-PPK-QEEVEKPI-STSEPKASKP-SAASPEDRLFASPVARNLAEEHNVSLSSIKG 155 (425)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~asP~aR~lA~e~gIdl~~v~g 155 (425)
........... ..++...+..+. +.. +.....+. ..+.+..... .....+.++++||+||+||+||||||+.|+|
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 83 DAFKNYKLESS-ASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccc-ccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 00000000000 000000000000 000 00000000 0000000000 0011123577999999999999999999999
Q ss_pred CCCCCccchhhHHHHHHhcCCCCCCC--CCCCC--CCCC--CCCCccccccchhhhhhhhhccccccCccEEEEeeeeeH
Q 014404 156 TGPNGLIVKADIEDYLASRGKEVPAK--APKGK--DVAA--PALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICV 229 (425)
Q Consensus 156 tG~~GrI~~~DV~~~~~~~~~~~~~~--~~~~~--~~~~--~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDv 229 (425)
||++|||+++||++|+.......+.+ .+... .... .....+.+||+++||.|+++|+.|++++||||++.++|+
T Consensus 162 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~ 241 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNV 241 (435)
T ss_pred CCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEh
Confidence 99999999999999985421111110 00000 0000 111234679999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCC
Q 014404 230 DNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKK 309 (425)
Q Consensus 230 t~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~ 309 (425)
|+|+++|+++++.... |.++||++||+||+++||++||.||++|+++.|++|+++|||+||++++||++|||++++++
T Consensus 242 t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~ 319 (435)
T TIGR01349 242 DKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADAK 319 (435)
T ss_pred HHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCcccC
Confidence 9999999999864332 78999999999999999999999999999988999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCc---eeE
Q 014404 310 GLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQ---YKF 386 (425)
Q Consensus 310 sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~---~~~ 386 (425)
|+.+|+++++++++++|+|+|+++||+||||||||+|+ ||+.+|+||||+||+|||++|++.++|++. +|+ +++
T Consensus 320 sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~-~G~~~~tpiin~pq~aIlgvG~i~~~pv~~--~~~~~~i~~ 396 (435)
T TIGR01349 320 GLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGM-FGIKDFTAIINPPQACILAVGAVEDVAVVD--NDEEKGFAV 396 (435)
T ss_pred CHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCc-cCccceECccCCCceEEEEcccceEEeEEe--CCccceeEE
Confidence 99999999999999999999999999999999999999 999999999999999999999999999874 444 999
Q ss_pred EeEEEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 387 SSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 387 r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|++|+||||||||+|||+++++||++|+++||+|+.||+
T Consensus 397 ~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 397 ASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred eeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999998875
No 6
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.7e-87 Score=677.79 Aligned_cols=396 Identities=30% Similarity=0.470 Sum_probs=328.9
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+|+++||||+.++++|+.+|+|.++++++| +.+++|++|+++..++++...
T Consensus 3 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G-~~v~vG~~l~~i~~~~~~~~~ 81 (416)
T PLN02528 3 LAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPG-DIVKVGETLLKIMVEDSQHLR 81 (416)
T ss_pred CCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCC-CEeCCCCEEEEEeccCCcccc
Confidence 7999999999999999999999999999999999999999999999999999999999 799999999988543322110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
+.. ...+...+ .. . .+. .+.+ . ... ...+++||+||+||++|||||+.|+|||++|
T Consensus 82 -----~~~---~~~~~~~~--~~---~----~~~-~~~~---~-~~~--~~~~~asP~aR~lA~e~gvdl~~v~gtG~~G 137 (416)
T PLN02528 82 -----SDS---LLLPTDSS--NI---V----SLA-ESDE---R-GSN--LSGVLSTPAVRHLAKQYGIDLNDILGTGKDG 137 (416)
T ss_pred -----ccC---CCCCCCCc--cC---C----CCC-CCCc---c-ccc--cCCccCChHHHHHHHHhCCCHHHCCCCCCCC
Confidence 000 00000000 00 0 000 0000 0 000 1135699999999999999999999999999
Q ss_pred ccchhhHHHHHHhcCC-CCC--CCCCCCCCC-------CCC-CC--CccccccchhhhhhhhhccccccCccEEEEeeee
Q 014404 161 LIVKADIEDYLASRGK-EVP--AKAPKGKDV-------AAP-AL--DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDI 227 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~-~~~--~~~~~~~~~-------~~~-~~--~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~i 227 (425)
||+++||++|++.... ..+ +..+..+.. ..+ .. ..+.+|++++||.|+++|..|+ ++||||+..++
T Consensus 138 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~ei 216 (416)
T PLN02528 138 RVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEI 216 (416)
T ss_pred cEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEE
Confidence 9999999999853211 100 000000000 000 00 1245799999999999999997 99999999999
Q ss_pred eHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCC--ceeeeCccceEEEeecCCCeEEEEEec
Q 014404 228 CVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVIRD 305 (425)
Q Consensus 228 Dvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~--~i~~~~~i~i~~av~~~~gl~~pvi~~ 305 (425)
|+|+|+++|+++++... ..|.|+||++||+||+++||++||.||++|+++ .+++|+++|||+||++++||++|||++
T Consensus 217 d~~~l~~~r~~~~~~~~-~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~ 295 (416)
T PLN02528 217 NVDALVELKASFQENNT-DPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKN 295 (416)
T ss_pred EhHHHHHHHHHHhhhhh-hcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCC
Confidence 99999999999985432 247899999999999999999999999999765 699999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCcee
Q 014404 306 ADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYK 385 (425)
Q Consensus 306 ~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~ 385 (425)
++++|+.+|+++++++++++|+|+|+++|+.||||||||+|+ ||+.+|+||||+||+|||++|++.++|++. ++|+++
T Consensus 296 a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~-~G~~~~tpIin~pq~aIlgvG~i~~~pv~~-~~g~i~ 373 (416)
T PLN02528 296 VQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGA-IGGKFGSPVLNLPEVAIIALGRIQKVPRFV-DDGNVY 373 (416)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCcc-ccCCceECcccCCceEEEEcccceEEeEEe-CCCcEE
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999875 368999
Q ss_pred EEeEEEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 386 FSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 386 ~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
+|++|+||||||||+|||+++++||+.|+++||||+.||+
T Consensus 374 ~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~lll 413 (416)
T PLN02528 374 PASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLML 413 (416)
T ss_pred EEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCHHHHHh
Confidence 9999999999999999999999999999999999998875
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=3.6e-87 Score=697.08 Aligned_cols=412 Identities=30% Similarity=0.480 Sum_probs=331.6
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||++|+ |+||+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++| +.|++|++|+++...+++...
T Consensus 121 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G-~~v~vG~~l~~i~~~~~~~~~ 198 (546)
T TIGR01348 121 VPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVG-DSVPTGDLILTLSVAGSTPAT 198 (546)
T ss_pred CCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCC-CEecCCCEEEEEecCCCCccc
Confidence 899999 999999999999999999999999999999999999999999999999999 799999999998654332110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCc-ccChhHHhHHHHcCCCCCccccCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIKGTGPN 159 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~asP~aR~lA~e~gIdl~~v~gtG~~ 159 (425)
.. .+. ..++..+++.+....+...+.+.....+. ........+.++ ++||+||+||+||||||+.|+|||++
T Consensus 199 ~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~ 271 (546)
T TIGR01348 199 AP--APA----SAQPAAQSPAATQPEPAAAPAAAKAQAPA-PQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIK 271 (546)
T ss_pred cc--Ccc----cccccCCCCccccccccCCCCCCCccCcc-cccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCC
Confidence 00 000 00000000000000000000000000000 000001112245 69999999999999999999999999
Q ss_pred CccchhhHHHHHHhcCC-CCCCCCC-CCC---CCCCC-----CC-CccccccchhhhhhhhhccccccCccEEEEeeeee
Q 014404 160 GLIVKADIEDYLASRGK-EVPAKAP-KGK---DVAAP-----AL-DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDIC 228 (425)
Q Consensus 160 GrI~~~DV~~~~~~~~~-~~~~~~~-~~~---~~~~~-----~~-~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iD 228 (425)
|||+++||++|+..... .++.+.+ ..+ ....+ .. ..+.+|++++||.|+++|.+|++++||||++.++|
T Consensus 272 GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evd 351 (546)
T TIGR01348 272 GRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKAD 351 (546)
T ss_pred CeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEE
Confidence 99999999999853211 1110000 000 00000 00 13457999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecC--CceeeeCccceEEEeecCCCeEEEEEecC
Q 014404 229 VDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGLYVPVIRDA 306 (425)
Q Consensus 229 vt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~--~~i~~~~~i~i~~av~~~~gl~~pvi~~~ 306 (425)
+|+|+++|+++++.... .|.|+||++||+||+++||++||.||++|++ +.+++++++|||+||++++||++|||+++
T Consensus 352 vt~l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a 430 (546)
T TIGR01348 352 ITEMEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDV 430 (546)
T ss_pred cHHHHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCc
Confidence 99999999999975544 4789999999999999999999999999974 46999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeE
Q 014404 307 DKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKF 386 (425)
Q Consensus 307 ~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~ 386 (425)
+++||.+|++++++|++++|+|+|+++||.||||||||+|+ ||+.+|+||||+||+|||++|++.++|++. +|++++
T Consensus 431 ~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~-~G~~~~~piin~Pq~aIl~vg~~~~~p~~~--~~~~~~ 507 (546)
T TIGR01348 431 DRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGG-IGGTAFTPIVNAPEVAILGVSKSGMEPVWN--GKEFEP 507 (546)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCC-CCCcceECCCCCCceEEEEcccceEEeEEE--CCEEEE
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999873 679999
Q ss_pred EeEEEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 387 SSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 387 r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|++|+|||+||||+|||+++++||++|+++||+|..||+
T Consensus 508 ~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 508 RLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred EEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999998875
No 8
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.8e-86 Score=647.99 Aligned_cols=420 Identities=53% Similarity=0.848 Sum_probs=352.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||.|+++|+||.|++|.+++||.+.+||+||||||||++|++++.++|++.||++++|...|+||.+|+++++.++++..
T Consensus 43 MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di~~ 122 (470)
T KOG0557|consen 43 MPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDIAA 122 (470)
T ss_pred cCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecccccHHH
Confidence 89999999999999999999999999999999999999999999999999999999997789999999999999999888
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
++....+.+.....++.+. ++.++.....+.|.+.+.+..+.+.....+.++++||.+|+||.|+|+||++|.||||+|
T Consensus 123 ~k~~k~~~s~~~~~~~~~~-~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i~gtGP~G 201 (470)
T KOG0557|consen 123 FKLPKDEASSGEQSPSAAP-PPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHG 201 (470)
T ss_pred hhccccccccccCCcccCC-CCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccCcCcCCCc
Confidence 7765443111111111111 111111111111211111222222222225589999999999999999999999999999
Q ss_pred ccchhhHHHHHHhcCCCCCCCC------CCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHH
Q 014404 161 LIVKADIEDYLASRGKEVPAKA------PKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMG 234 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~ 234 (425)
||++.||++|++..+......+ ++...+..+...++++|++.||+.+++||.+|+++|||+|++.+++++.|++
T Consensus 202 ri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~~~d~ll~ 281 (470)
T KOG0557|consen 202 RILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDVNLDKLLA 281 (470)
T ss_pred eeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeeeehHHHHH
Confidence 9999999999985432211111 1111112223348899999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecC-CceeeeCccceEEEeecCCCeEEEEEecCCCCCHHH
Q 014404 235 LRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD-EYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 313 (425)
Q Consensus 235 ~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~-~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~e 313 (425)
+|++++ .++++.++|+++|++||.+.||.++|+.|++|++ ..|+++++|||++||.+++||++|+|+|++.+.+.+
T Consensus 282 ~r~~ln---~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~na~~kgl~~ 358 (470)
T KOG0557|consen 282 LREKLN---FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQNADAKGLST 358 (470)
T ss_pred HHHHhh---hcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhhcccccHHH
Confidence 999998 2235789999999999999999999999999998 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeee-cCCCCceeEEeEEEE
Q 014404 314 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVP-GLGPDQYKFSSFMSV 392 (425)
Q Consensus 314 i~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~-~~~~g~~~~r~~m~l 392 (425)
|++++.++.+++|.++|.|++++||||+|||||| ||++.|+.|+||||.|||++|......|. .+.++.+.....|++
T Consensus 359 is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGm-f~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~V 437 (470)
T KOG0557|consen 359 ISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGM-FGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTV 437 (470)
T ss_pred HHHHHHHHHHHHhhccCCcccccCCceeHhhccC-cCccccccccCCchhhhhhcccCccccccCCCcccccceeeeeEE
Confidence 9999999999999999999999999999999999 99999999999999999999999888775 234678999999999
Q ss_pred EEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 393 TLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 393 slt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
||++|||++||+.++|||+.|+++||||..|||
T Consensus 438 Tls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 438 TLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred EEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 999999999999999999999999999999886
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.8e-85 Score=658.69 Aligned_cols=395 Identities=45% Similarity=0.675 Sum_probs=336.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||++|+|.+|++++| +.|+||++|+++.+.+++.
T Consensus 7 mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G-~~V~Vg~~I~~i~~~~~~~-- 83 (404)
T COG0508 7 MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEG-DTVPVGAVIARIEEEGADA-- 83 (404)
T ss_pred cCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCC-CEEcCCCeEEEEecCCCcc--
Confidence 8999999999999999999999999999999999999999999999999999999999 7999999999997655431
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
+.......++..+. + ..++.+ .......+..+||++|++|+|+||||+++.|||++|
T Consensus 84 -----~a~~~~~~~~~~~~-------~------~~~~~~-----~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~g 140 (404)
T COG0508 84 -----PAAAEAPPEPAAAA-------P------ASAPAT-----AASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGG 140 (404)
T ss_pred -----cccCcccCCccccC-------c------CcccCc-----cccccccccccCcchhhhhhhcCCCHHHcCCcCCCC
Confidence 00000000000000 0 000000 000011467799999999999999999999999999
Q ss_pred ccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHh
Q 014404 161 LIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLN 240 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~ 240 (425)
||+++|++.++...........+..+.+.......+++|++++||.++++|..|+.++||++.+.++|++.|+++|++++
T Consensus 141 ri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~ 220 (404)
T COG0508 141 RITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLK 220 (404)
T ss_pred ceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhh
Confidence 99999999998754111111111111111123346688999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCC--ceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHH
Q 014404 241 SIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEV 318 (425)
Q Consensus 241 ~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~--~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~ 318 (425)
..+..+ |.|+||++|++||++.||+++|.+|++++++ .+++++++|||+||++++||++|||++++++++.+|++++
T Consensus 221 ~~~~~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i 299 (404)
T COG0508 221 EEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEI 299 (404)
T ss_pred hhhccc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHH
Confidence 866544 8999999999999999999999999877754 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecc
Q 014404 319 RQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDH 398 (425)
Q Consensus 319 ~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DH 398 (425)
.+|..++|+|+|++++|+||||||||+|+ ||..+|+||+|+||++||++|++.++|++. ++++++|++|+|||+|||
T Consensus 300 ~~la~~aR~~kl~~~e~~ggtftisn~G~-~g~~~~tpiin~Pq~aILgv~~~~~rpv~~--~~~i~~~~mm~lsls~DH 376 (404)
T COG0508 300 KDLAKKARDGKLTPEEMQGGTFTISNLGM-FGSLMFTPIINPPQVAILGVGAIEERPVVV--GGEIVVRPMMYLSLSYDH 376 (404)
T ss_pred HHHHHHHHhcCcCHHHhCCceEEeecCCc-cccceecccccChhHheeeccccccCceEe--cCceeeEeeEeecccccc
Confidence 99999999999999999999999999999 999999999999999999999999999884 559999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhcCcccccC
Q 014404 399 RVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 399 RviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|++||+++++||..++++||+|..||+
T Consensus 377 RviDGa~aa~Fl~~ik~~le~p~~ll~ 403 (404)
T COG0508 377 RVIDGAEAARFLVALKELLEDPERLLL 403 (404)
T ss_pred cccccHHHHHHHHHHHHHhcChhhhhc
Confidence 999999999999999999999998875
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=1.2e-83 Score=682.42 Aligned_cols=406 Identities=31% Similarity=0.474 Sum_probs=329.3
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++| +.|++|++|+.+.+.+++...
T Consensus 211 ~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G-~~v~~G~~l~~i~~~~~~~~~ 287 (633)
T PRK11854 211 VPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVG-DKVKTGSLIMRFEVEGAAPAA 287 (633)
T ss_pred cCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCC-CEecCCCEEEEEecCCCCccc
Confidence 79999 999999999999999999999999999999999999999999999999999 799999999998643322100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC-CCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKA-SKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPN 159 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~ 159 (425)
.+... .++..++.+.. .+ .+...+.+.. ........+.++++||+||+||++|||||+.|+|||++
T Consensus 288 ----~~~~~----~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~ 354 (633)
T PRK11854 288 ----APAKQ----EAAAPAPAAAK-AE----APAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRK 354 (633)
T ss_pred ----ccccc----CCCCCCccccc-cC----CCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCC
Confidence 00000 00000000000 00 0000000000 00000111235779999999999999999999999999
Q ss_pred CccchhhHHHHHHhcCC-CC--CCCCCCC-C----C--CCCC--CC-CccccccchhhhhhhhhccccccCccEEEEeee
Q 014404 160 GLIVKADIEDYLASRGK-EV--PAKAPKG-K----D--VAAP--AL-DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVD 226 (425)
Q Consensus 160 GrI~~~DV~~~~~~~~~-~~--~~~~~~~-~----~--~~~~--~~-~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~ 226 (425)
|||+++||++|+.+... .. +.+++.. . . +..+ .. ....+||+++||.|+++|..||+++|||+++.+
T Consensus 355 GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~e 434 (633)
T PRK11854 355 GRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDK 434 (633)
T ss_pred CeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeE
Confidence 99999999999854211 10 1100000 0 0 0000 01 124579999999999999999999999999999
Q ss_pred eeHHHHHHHHHHHhhHHH-hhcCCcccHHHHHHHHHHHHHhhCCCCCceec--CCceeeeCccceEEEeecCCCeEEEEE
Q 014404 227 ICVDNLMGLRNQLNSIQE-ASAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENGLYVPVI 303 (425)
Q Consensus 227 iDvt~l~~~rk~~~~~~~-~~~g~klt~~~~likA~~~Al~~~P~ln~~~~--~~~i~~~~~i~i~~av~~~~gl~~pvi 303 (425)
+|+|.|+++|+++++... ...|.++|+++||+||+++||++||+||++|+ ++++++|+++|||+||++++||++|||
T Consensus 435 vD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi 514 (633)
T PRK11854 435 ADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVF 514 (633)
T ss_pred EEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeE
Confidence 999999999998875332 23578999999999999999999999999996 457999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCc
Q 014404 304 RDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQ 383 (425)
Q Consensus 304 ~~~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~ 383 (425)
++++++||.+|+++++++.+++|+|+|+++|+.||||||||+|| ||+++|+||||+||+|||++|++.++|++. ++.
T Consensus 515 ~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~-~G~~~~tpii~ppq~aIlgvG~i~~~p~~~--~~~ 591 (633)
T PRK11854 515 KDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGG-LGTTHFTPIVNAPEVAILGVSKSAMEPVWN--GKE 591 (633)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcc-cCCcceeccccCCceEEEEcccceEEEEEE--CCE
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999873 678
Q ss_pred eeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 384 YKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 384 ~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
+++|++|+|||+||||+|||+++++||++|+++||+|..|||
T Consensus 592 ~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 592 FAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999999998876
No 11
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=3.9e-82 Score=643.36 Aligned_cols=402 Identities=45% Similarity=0.661 Sum_probs=330.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccc-ccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE-DIP 79 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~-~~~ 79 (425)
||++|++|.||+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++| +.|.+|++|+++.+.++ +..
T Consensus 7 ~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G-~~v~~G~~l~~i~~~~~~~~~ 85 (411)
T PRK11856 7 MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEG-DVVPVGSVIAVIEEEGEAEAA 85 (411)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCC-CEeCCCCEEEEEecCCCCccc
Confidence 7999999999999999999999999999999999999999999999999999999999 79999999999865443 211
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCC
Q 014404 80 KFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPN 159 (425)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~ 159 (425)
.. ++.... .+.. ++.+. .. +.....+............+.++||+||+||+||||||++|+|||++
T Consensus 86 ~~----~~~~~~--~~~~-~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~ 151 (411)
T PRK11856 86 AA----AEAAPE--APAP-EPAPA--AA-----AAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPG 151 (411)
T ss_pred cc----cCCCCC--CCCC-CCCCC--CC-----CCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCC
Confidence 00 000000 0000 00000 00 00000000000000111123468999999999999999999999999
Q ss_pred CccchhhHHHHHHhcCCCCC-CCCCCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHH
Q 014404 160 GLIVKADIEDYLASRGKEVP-AKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQ 238 (425)
Q Consensus 160 GrI~~~DV~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~ 238 (425)
|||+++||++|+.+...... ...+....+.......+.+|++++||.++++|..||+++|||+++.++|+|+|+++|++
T Consensus 152 Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~ 231 (411)
T PRK11856 152 GRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQ 231 (411)
T ss_pred CeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHH
Confidence 99999999999854321100 00000000000111245689999999999999999999999999999999999999999
Q ss_pred HhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHH
Q 014404 239 LNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEV 318 (425)
Q Consensus 239 ~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~ 318 (425)
+++. +.++||+++|+||+++||++||+||++|.++.+++|+++|+|+||++++||++|||++++++||.+|++++
T Consensus 232 ~~~~-----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~ 306 (411)
T PRK11856 232 LKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREI 306 (411)
T ss_pred HHhh-----ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHH
Confidence 8632 36899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecc
Q 014404 319 RQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDH 398 (425)
Q Consensus 319 ~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DH 398 (425)
+++++++++|+|+++|+.+|||+|||+|| +|..+|+|+||+||+|||++|++.++|++. +|++++|.+|||||+|||
T Consensus 307 ~~~~~~ar~~~l~~~~~~~gtftiSn~G~-~g~~~~~Pii~~p~~ail~iG~~~~~~~~~--~g~~~~~~~m~lslt~DH 383 (411)
T PRK11856 307 KDLAEKAREGKLKPEELQGGTFTISNLGM-FGGDYFTPIINPPEVAILGVGAIVERPVVV--DGEIVVRKVMPLSLSFDH 383 (411)
T ss_pred HHHHHHHHcCCCCHHHhCCCeEEEeCCCc-cCCCceECccCCCceEEEEcccceEEEEEE--CCEEEEEEEEEEeEEeeh
Confidence 99999999999999999999999999999 999999999999999999999999999874 789999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhcCcccccC
Q 014404 399 RVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 399 RviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|+|||+|+++||+.|+++||+|+.||+
T Consensus 384 RviDG~~aa~Fl~~l~~~le~p~~ll~ 410 (411)
T PRK11856 384 RVIDGADAARFLKALKELLENPALLLL 410 (411)
T ss_pred hhcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence 999999999999999999999999875
No 12
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.2e-82 Score=664.43 Aligned_cols=407 Identities=36% Similarity=0.529 Sum_probs=329.6
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||+ |+||+|++|+|++||.|++||.|++|||||+.++|+||++|+|.++++++| +.|.+|++|+++.+.+++...
T Consensus 124 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G-~~v~~G~~l~~i~~~~~~~~~ 201 (547)
T PRK11855 124 VPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVG-DKVSVGSLLVVIEVAAAAPAA 201 (547)
T ss_pred cCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCC-CEecCCCEEEEEecCCCcccc
Confidence 899999 999999999999999999999999999999999999999999999999999 799999999998654322100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCc-ccChhHHhHHHHcCCCCCccccCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIKGTGPN 159 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~asP~aR~lA~e~gIdl~~v~gtG~~ 159 (425)
. ..+. ...+... ..+.+ ... +.....+. ..........+ +. ++||+||+||+||||||+.|+|||++
T Consensus 202 -~-~~~~----~~~~~~~-~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~-~~~~asP~aR~lA~e~gidl~~v~gtG~~ 269 (547)
T PRK11855 202 -A-AAPA----AAAPAAA-AAAAP-APA--PAAAAAPA-AAAPAAAAAPG-KAPHASPAVRRLARELGVDLSQVKGTGKK 269 (547)
T ss_pred -c-cCCC----CCCCccc-cccCC-CCC--CcccccCC-ccccccccccC-CcccCChHHHHHHHHhCCCHHHCcCCCCC
Confidence 0 0000 0000000 00000 000 00000000 00000011112 33 79999999999999999999999999
Q ss_pred CccchhhHHHHHHhcCCC-C-CCC-CCCC---CC--CCCCC------CCccccccchhhhhhhhhccccccCccEEEEee
Q 014404 160 GLIVKADIEDYLASRGKE-V-PAK-APKG---KD--VAAPA------LDYVDIPHSQIRKITASRLLFSKQTIPHYYLTV 225 (425)
Q Consensus 160 GrI~~~DV~~~~~~~~~~-~-~~~-~~~~---~~--~~~~~------~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~ 225 (425)
|||+++||++|+.+.... . +.. +... .. ...+. .....+|++++||.|+++|..|++++|||+++.
T Consensus 270 GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~ 349 (547)
T PRK11855 270 GRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFD 349 (547)
T ss_pred CcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 999999999998542111 0 000 0000 00 00110 013457899999999999999999999999999
Q ss_pred eeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceec--CCceeeeCccceEEEeecCCCeEEEEE
Q 014404 226 DICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENGLYVPVI 303 (425)
Q Consensus 226 ~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~--~~~i~~~~~i~i~~av~~~~gl~~pvi 303 (425)
++|+|+|+++|+++++..+. .|.++||++||+||+++||++||+||++|+ ++.+++|+++||||||++++||++|||
T Consensus 350 evd~t~l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi 428 (547)
T PRK11855 350 EADITDLEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVI 428 (547)
T ss_pred EEEChHHHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCc
Confidence 99999999999999865443 378999999999999999999999999998 457999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCc
Q 014404 304 RDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQ 383 (425)
Q Consensus 304 ~~~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~ 383 (425)
++++++++.+|+++++++++++|+++|.++|+.+|||||||+|| ||+++|+|++|+||+|||++|++.++|++ .+|.
T Consensus 429 ~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~-~g~~~~tpii~~pq~ail~~G~~~~~pv~--~~~~ 505 (547)
T PRK11855 429 KDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGG-IGGTAFTPIINAPEVAILGVGKSQMKPVW--DGKE 505 (547)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCcc-ccccceecCcCCCceEEEEcccceEeeee--eCCE
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999965 4688
Q ss_pred eeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 384 YKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 384 ~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
+.+|++|+|||+||||+|||+|+++||+.|+++||+|+.||+
T Consensus 506 ~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 506 FVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred EEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999999998875
No 13
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=4.9e-81 Score=627.78 Aligned_cols=366 Identities=30% Similarity=0.460 Sum_probs=303.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++| +.|++|++|++|.+.+++.+
T Consensus 96 mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eG-d~V~vG~~L~~I~~~~~~~~- 173 (463)
T PLN02226 96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEG-DTVEPGTKVAIISKSEDAAS- 173 (463)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCC-CEecCCCEEEEeccCCcccc-
Confidence 7999999999999999999999999999999999999999999999999999999999 79999999999854322100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
.+. .....+. ...+ .+.. +. .... ..++.++|++|+.+ .++|+.+
T Consensus 174 ----~~~--~~~~~~~-------~~~~----~~~~-~~------~~~~-~~~v~asp~~r~~~----------~~~~~~~ 218 (463)
T PLN02226 174 ----QVT--PSQKIPE-------TTDP----KPSP-PA------EDKQ-KPKVESAPVAEKPK----------APSSPPP 218 (463)
T ss_pred ----ccC--ccCCCCC-------CCCC----CCCC-cc------cccc-ccCCCcchhhcccc----------CCCCCCC
Confidence 000 0000000 0000 0000 00 0000 12466888887643 2334322
Q ss_pred ccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHh
Q 014404 161 LIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLN 240 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~ 240 (425)
.- . +...+. . ......+.+|++++||.|+++|.+|++++||||++.++|+|+|+++|++++
T Consensus 219 ~~--------------~-~~~~~~---~-~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~ 279 (463)
T PLN02226 219 PK--------------Q-SAKEPQ---L-PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYK 279 (463)
T ss_pred Cc--------------c-cccCcc---c-ccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHH
Confidence 10 0 000000 0 001113457999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHHH
Q 014404 241 SIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQ 320 (425)
Q Consensus 241 ~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~ 320 (425)
+....+.|.|+||++||+||+++||++||.||++|+++.|++++++|||+||++++||++|||++++++++.||++++++
T Consensus 280 ~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~ 359 (463)
T PLN02226 280 DAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTING 359 (463)
T ss_pred hhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHH
Confidence 76555558899999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccc
Q 014404 321 LAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRV 400 (425)
Q Consensus 321 l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRv 400 (425)
+++++|+|+|+++|++||||||||+|+ ||+.+|+||||+||+|||++|++.++|++. +|++++|++|+|||+||||+
T Consensus 360 L~~kAR~gkL~~~dl~GGTfTISNlG~-~Gv~~ftPIInpPqvAILgvG~i~~~pvv~--~g~i~~r~~m~lsLs~DHRV 436 (463)
T PLN02226 360 LAKKANEGTISIDEMAGGSFTVSNGGV-YGSLISTPIINPPQSAILGMHSIVSRPMVV--GGSVVPRPMMYVALTYDHRL 436 (463)
T ss_pred HHHHHHcCCCCHHHhCCCeEEEECCCc-ccccceeccccCCcEEEEEcccceEEEEEE--CCEEEEEeEEEEeEecchhh
Confidence 999999999999999999999999999 999999999999999999999999999974 78999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcccccC
Q 014404 401 IDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 401 iDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|||+++|+||++|+++||+|+.||+
T Consensus 437 IDGa~aA~FL~~lk~~LE~P~~LLl 461 (463)
T PLN02226 437 IDGREAVYFLRRVKDVVEDPQRLLL 461 (463)
T ss_pred hCcHHHHHHHHHHHHHhcCHHHHhh
Confidence 9999999999999999999998875
No 14
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=8.3e-80 Score=615.44 Aligned_cols=368 Identities=30% Similarity=0.462 Sum_probs=297.7
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++| +.|++|++|+++.+.+++..
T Consensus 49 ~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G-~~V~~G~~L~~I~~~~~~~~- 126 (418)
T PTZ00144 49 VPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG-DTVEVGAPLSEIDTGGAPPA- 126 (418)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCC-CEecCCCEEEEEcCCCcccc-
Confidence 8999999999999999999999999999999999999999999999999999999999 79999999999854332100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
.+. . +.... .++.+.+ .....+.|.. ......+..++|.+|+..
T Consensus 127 ----~~~---~---~~~~~-~~~~~~~----~~~~~~~p~~----~~~a~~~~~a~p~vr~~~----------------- 170 (418)
T PTZ00144 127 ----AAP---A---AAAAA-KAEKTTP----EKPKAAAPTP----EPPAASKPTPPAAAKPPE----------------- 170 (418)
T ss_pred ----ccc---c---ccCCC-CCccCCC----CCCCCCCCcc----ccccccccCCchhhhccc-----------------
Confidence 000 0 00000 0000000 0000000000 000011234555554310
Q ss_pred ccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHh
Q 014404 161 LIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLN 240 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~ 240 (425)
.+. .. +..+. . ........+.+|++++||.|+++|.+|++++||||++.++|+|+|+++|++++
T Consensus 171 -----------~~~-~~--~~~~~-~-~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~ 234 (418)
T PTZ00144 171 -----------PAP-AA--KPPPT-P-VARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYK 234 (418)
T ss_pred -----------cCC-CC--CCCCC-C-ccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHH
Confidence 000 00 00000 0 00001112347999999999999999999999999999999999999999998
Q ss_pred hHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHHH
Q 014404 241 SIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQ 320 (425)
Q Consensus 241 ~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~ 320 (425)
+...++.|.|+||++|++||+++||++||.||++|+++.+++++++|||+||++++||++|||++++++++.+|++++++
T Consensus 235 ~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~ 314 (418)
T PTZ00144 235 DDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELAD 314 (418)
T ss_pred hhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHH
Confidence 75544458899999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccc
Q 014404 321 LAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRV 400 (425)
Q Consensus 321 l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRv 400 (425)
+++++|+|+|+++|+.||||||||+|+ +|+.+|+||||+||+|||++|++.++|++. +|++++|++|+|||+||||+
T Consensus 315 L~~~ar~g~L~~~e~~GgTfTISNlG~-~G~~~~tpIInpPq~aILgvG~i~~~pvv~--~g~i~~r~~m~lsLs~DHRv 391 (418)
T PTZ00144 315 LAEKARNNKLTLEDMTGGTFTISNGGV-FGSLMGTPIINPPQSAILGMHAIKKRPVVV--GNEIVIRPIMYLALTYDHRL 391 (418)
T ss_pred HHHHHHcCCCCHHHhCCceEEEECCCC-CCcceeeeeecCCceEEEecccceeEeEEE--CCEEEEEeEEEEEEecchhh
Confidence 999999999999999999999999999 999999999999999999999999999974 78999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcccccC
Q 014404 401 IDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 401 iDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
+||+++|+||++|+++||+|+.||+
T Consensus 392 iDGa~AA~FL~~lk~~LE~P~~lll 416 (418)
T PTZ00144 392 IDGRDAVTFLKKIKDLIEDPARMLL 416 (418)
T ss_pred hChHHHHHHHHHHHHHhcCHHHHhh
Confidence 9999999999999999999998764
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=2.2e-77 Score=559.73 Aligned_cols=390 Identities=32% Similarity=0.477 Sum_probs=327.6
Q ss_pred CCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccccccccc
Q 014404 2 PSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKF 81 (425)
Q Consensus 2 P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~~ 81 (425)
-++||++.|++|.+|+|++||+|++.|.||||++||++++|+|.++|+|++|+...| +.+.||++|..+.-++.. +.
T Consensus 70 sdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~d-dia~VGk~Lvd~eve~~~-ds- 146 (474)
T KOG0558|consen 70 SDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPD-DIAKVGKPLVDLEVEDSQ-DS- 146 (474)
T ss_pred hhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCch-hhhHhCcceeeeeeccCc-CC-
Confidence 478999999999999999999999999999999999999999999999999999999 799999999876432211 10
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCCc
Q 014404 82 KDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNGL 161 (425)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~Gr 161 (425)
++.... .|+.+ .. + +.....+....+++|++||||+|+||||+.|+|||++||
T Consensus 147 ----~e~s~e--s~~vs-------~~----------~----~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGR 199 (474)
T KOG0558|consen 147 ----PEDSDE--SPAVS-------LG----------E----SKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGR 199 (474)
T ss_pred ----cccCCc--ccccc-------CC----------C----CchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCc
Confidence 000000 00000 00 0 001111233567999999999999999999999999999
Q ss_pred cchhhHHHHHHhcCCCC--CCC-----CCCC-C-CCCCCC-CCccccccchhhhhhhhhccccccCccEEEEeeeeeHHH
Q 014404 162 IVKADIEDYLASRGKEV--PAK-----APKG-K-DVAAPA-LDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDN 231 (425)
Q Consensus 162 I~~~DV~~~~~~~~~~~--~~~-----~~~~-~-~~~~~~-~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~ 231 (425)
|+|+||++|+.+..... +.+ .+.+ + ....+. .....+|+.+.+|+|.+.|+.+ ..||||.+..+||+|.
T Consensus 200 vLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dEIn~~s 278 (474)
T KOG0558|consen 200 VLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDEINCDS 278 (474)
T ss_pred chHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCccccccccChHH
Confidence 99999999998653211 100 0000 0 001111 1234579999999999999988 7899999999999999
Q ss_pred HHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCC--ceeeeCccceEEEeecCCCeEEEEEecCCCC
Q 014404 232 LMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKK 309 (425)
Q Consensus 232 l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~--~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~ 309 (425)
|+++|++++....+ .|+|+||++|++||++.||-++|.+|++++.. .|++..+.|||+|++++.||+||.|+|++.+
T Consensus 279 Lvklr~elk~~a~e-~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~ 357 (474)
T KOG0558|consen 279 LVKLRQELKENAKE-RGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSL 357 (474)
T ss_pred HHHHHHHHhhhhhh-cCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchh
Confidence 99999999865443 58999999999999999999999999999764 7899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeE
Q 014404 310 GLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSF 389 (425)
Q Consensus 310 sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~ 389 (425)
|+.||++++++|.+..+.|+|+++|+.+|||++||+|. +|+++..|+|++||+||.++|+|.+-|-.. ..|++....+
T Consensus 358 si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~-IGGtf~~P~i~~PeVAIgAlGrie~vPrFn-kk~~V~~a~I 435 (474)
T KOG0558|consen 358 SIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGA-IGGTFASPVIMPPEVAIGALGRIEKVPRFN-KKGEVYPASI 435 (474)
T ss_pred hHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeeccc-ccccccCcccccchhhhhhccccccccccC-CCCCEEEeEE
Confidence 99999999999999999999999999999999999999 999999999999999999999998877664 4688999999
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 390 MSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 390 m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|.+||+.||||+||+..|||-+.|++|||||+.|||
T Consensus 436 M~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll 471 (474)
T KOG0558|consen 436 MMVSWSADHRVIDGATMARFSNQWKEYLENPALMLL 471 (474)
T ss_pred EEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhh
Confidence 999999999999999999999999999999998875
No 16
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=2.1e-73 Score=560.90 Aligned_cols=293 Identities=33% Similarity=0.508 Sum_probs=259.4
Q ss_pred CCCcccChhHHhHHHHcCCCCCccccCCCCCccchhhHHHHHHhcCCCC-CCCC-CCCCC--CCC---CCCCccccccch
Q 014404 130 EDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEV-PAKA-PKGKD--VAA---PALDYVDIPHSQ 202 (425)
Q Consensus 130 ~~~~~asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~-~~~~-~~~~~--~~~---~~~~~~~~~~s~ 202 (425)
..++++||+||+||+|+||||++|+|||++|||+++||++|+.+..... .+++ ...+. .+. +....+.+|+++
T Consensus 46 ~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 125 (347)
T PRK14843 46 TNVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTP 125 (347)
T ss_pred cccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcH
Confidence 3466799999999999999999999999999999999999975321111 0100 00000 000 011134579999
Q ss_pred hhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecC--Cce
Q 014404 203 IRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYI 280 (425)
Q Consensus 203 ~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~--~~i 280 (425)
+||.|+++|.+||+++||||++.++|+|+|+++|+++++.+....|.|+||++||+||++.||++||.||++|++ +.+
T Consensus 126 ~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i 205 (347)
T PRK14843 126 MRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTI 205 (347)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeE
Confidence 999999999999999999999999999999999999986544445789999999999999999999999999974 469
Q ss_pred eeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCC
Q 014404 281 RQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINP 360 (425)
Q Consensus 281 ~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~ 360 (425)
++++++|||+||++++||++|||++++++|+.+|+++++++.+++|+|+|+++|++||||||||+|+ ||+.+|+|||||
T Consensus 206 ~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~-~G~~~~tpIInp 284 (347)
T PRK14843 206 ITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGM-FGVQSFGPIINQ 284 (347)
T ss_pred EEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCC-CcccceeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 361 PQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 361 p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
||+|||++|++.++|++. +|++++|++|+||||||||+|||+++++||+.|+++||+|+.||+
T Consensus 285 Pq~aIlgvG~i~~~pv~~--~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 285 PNSAILGVSSTIEKPVVV--NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred CceEEEecCCcceeeEEE--CCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 999999999999999974 789999999999999999999999999999999999999998875
No 17
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=5.8e-73 Score=548.83 Aligned_cols=289 Identities=29% Similarity=0.455 Sum_probs=257.1
Q ss_pred cccChhHHhHHHHcCCCCCccccCCCCCccchhhHHHHHHhcCC--CC--CCCCCC-C-C----CC-C-CCCCCcccccc
Q 014404 133 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGK--EV--PAKAPK-G-K----DV-A-APALDYVDIPH 200 (425)
Q Consensus 133 ~~asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~~~~~~~--~~--~~~~~~-~-~----~~-~-~~~~~~~~~~~ 200 (425)
+++||+||+||+|+||||++|+|||++|||+++||++|+.+... .+ +.+.+. . . .+ . .+....+.+|+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV 81 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence 46899999999999999999999999999999999999753211 10 000000 0 0 00 0 01111345799
Q ss_pred chhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecC--C
Q 014404 201 SQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--E 278 (425)
Q Consensus 201 s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~--~ 278 (425)
+++|+.|+++|.+|++++|||++..++|+|+|+++|+++++.+.++.|.|+||++||+||+++||++||.||++|++ +
T Consensus 82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 161 (306)
T PRK11857 82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161 (306)
T ss_pred cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCC
Confidence 99999999999999999999999999999999999999987655556889999999999999999999999999974 3
Q ss_pred ceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeee
Q 014404 279 YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAII 358 (425)
Q Consensus 279 ~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii 358 (425)
.+++++++|||+||++++||++|||++++++|+.+|+++++++.+++|+|+|+++|++||||||||+|+ +|..+|+|||
T Consensus 162 ~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~-~G~~~~tpiI 240 (306)
T PRK11857 162 ELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGS-VGSLYGVPVI 240 (306)
T ss_pred EEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCC-CCccceeccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcCccccc
Q 014404 359 NPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESML 424 (425)
Q Consensus 359 ~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll 424 (425)
|+||+|||++|++.++|++ .+|++++|++|+|||+||||+|||+++++||++|+++||+|+.|+
T Consensus 241 n~pq~aILgvG~i~~~pvv--~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~ 304 (306)
T PRK11857 241 NYPELAIAGVGAIIDKAIV--KNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILG 304 (306)
T ss_pred CCCccceeecccceEEeEE--ECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence 9999999999999999998 478999999999999999999999999999999999999999765
No 18
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.2e-71 Score=523.72 Aligned_cols=379 Identities=32% Similarity=0.469 Sum_probs=299.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK 80 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~~~ 80 (425)
.|.++|+++||.|.+|++++||.|++++.||+|||||++++|+||.+|+|.++++++| |.|.+|+.|+.|....+..+.
T Consensus 77 vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~g-dtV~~g~~la~i~~gaApa~~ 155 (457)
T KOG0559|consen 77 VPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG-DTVTPGQKLAKISPGAAPAKG 155 (457)
T ss_pred cCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCC-CcccCCceeEEecCCCCCccc
Confidence 4899999999999999999999999999999999999999999999999999999999 799999999998654332211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccChhHHhHHHHcCCCCCccccCCCCC
Q 014404 81 FKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNG 160 (425)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIdl~~v~gtG~~G 160 (425)
. ...|+.....++++..+ .+.+.+. .+..+..|...++.++.+.....++ +...-+++-+++
T Consensus 156 ~-~~apa~~~pk~~~a~~a-~p~~~s~----~~p~~~apv~e~p~~p~~~~P~~~~-a~k~~v~~~~~~----------- 217 (457)
T KOG0559|consen 156 G-ASAPAKAEPKTAPAAAA-PPKPSSK----PPPKEAAPVAESPPAPSSPEPVPAS-AKKPSVAQPKPP----------- 217 (457)
T ss_pred c-ccCCCccCCCCCCCCCC-CCCccCC----CCccccCCCCCCCCCCCCCCCCCcc-ccCccccCCCCC-----------
Confidence 0 00111000000000000 0000000 0000000000000001011000000 000000000000
Q ss_pred ccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHh
Q 014404 161 LIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLN 240 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~ 240 (425)
++ ....+.....+++|++||+.+|.||.+|.++....+.+.++||++|+++|++++
T Consensus 218 ----------------------p~--~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~yk 273 (457)
T KOG0559|consen 218 ----------------------PS--EGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYK 273 (457)
T ss_pred ----------------------cc--cccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 00 011122345688999999999999999988888888899999999999999999
Q ss_pred hHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHHH
Q 014404 241 SIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQ 320 (425)
Q Consensus 241 ~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~ 320 (425)
+.+-+++|.|+.|+.+|+||++.||++.|.+|+.|+++.|+++|++||++||.++.||++|||||++.+++.||-..+..
T Consensus 274 daf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~ 353 (457)
T KOG0559|consen 274 DAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAG 353 (457)
T ss_pred HHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHH
Confidence 98877899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCeEEEeeCCCCCCccceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccc
Q 014404 321 LAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRV 400 (425)
Q Consensus 321 l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRv 400 (425)
|..|+|+|+|+-+||.||||||||=|- ||..+.|||||+||++||++..|.+||++ .+|++++|+||.+.||||||+
T Consensus 354 L~~KAr~g~laiedM~gGTFTISNGGV-fGSL~gTPIINpPQsAILGmHgI~eRPv~--v~G~Vv~RPMMYvALTYDHRl 430 (457)
T KOG0559|consen 354 LGKKARDGKLAIEDMAGGTFTISNGGV-FGSLYGTPIINPPQSAILGMHGIKERPVV--VGGQVVPRPMMYVALTYDHRL 430 (457)
T ss_pred HHHhhccCceeeeeccCceEEEeCCcE-eeeeccCcccCCchhhhhhccccccccee--eCCEeeeccceEEEeeccccc
Confidence 999999999999999999999999777 99999999999999999999999999998 489999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcccccC
Q 014404 401 IDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 401 iDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
|||.+|.-||+++++++|||..|||
T Consensus 431 iDGREAVtFLr~iK~~VEDP~~mll 455 (457)
T KOG0559|consen 431 IDGREAVTFLRKIKEAVEDPRKMLL 455 (457)
T ss_pred cccHHHHHHHHHHHHHhhCHHHHhh
Confidence 9999999999999999999999886
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=1.5e-60 Score=446.97 Aligned_cols=228 Identities=47% Similarity=0.764 Sum_probs=202.6
Q ss_pred CccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCc
Q 014404 194 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 273 (425)
Q Consensus 194 ~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~ 273 (425)
+.+++|++++||+++++|.+|++++||+|++.++|+|+|+++|+++++..... +.++|+++|++||+++||++||.||+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~-~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEP-GGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHT-TST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhh-ccCCChhHeeeehHhhhhHHHHHhcc
Confidence 45678999999999999999999999999999999999999999998765432 45899999999999999999999999
Q ss_pred eecCCc-eeeeCccceEEEeecCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCCcc
Q 014404 274 SWADEY-IRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIK 352 (425)
Q Consensus 274 ~~~~~~-i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg~~~g~~ 352 (425)
+|+++. +++++++|||+||++++||++|||++++++|+.||+++++++++++|+|+|+++|++||||||||+|+ +|+.
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~-~g~~ 160 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGM-FGVE 160 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGG-TT-S
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCC-CCcc
Confidence 998887 99999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ceeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcCcccccC
Q 014404 353 QFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425 (425)
Q Consensus 353 ~~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 425 (425)
+|+|||||||+|||++|++.++|++ .+|++++|++|++|||||||++||+++++||++|+++||+|+.|||
T Consensus 161 ~~~pii~~pq~ail~vG~i~~~p~~--~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 161 SFTPIINPPQVAILGVGAIRDRPVV--EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp CEE----TTSSEEEEEEEEEEEEEE--ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eeEccCCcccceEEEecceEEEEEE--EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 9999999999999999999999998 5889999999999999999999999999999999999999999986
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=6.8e-48 Score=403.12 Aligned_cols=221 Identities=24% Similarity=0.328 Sum_probs=209.0
Q ss_pred cccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCcee
Q 014404 196 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSW 275 (425)
Q Consensus 196 ~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~ 275 (425)
...++++++++++++|..| .++|+++...+|+++.|+++|+.+|++.++..|.|+||+++|+||+++||++||.+|++|
T Consensus 116 ~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy 194 (1228)
T PRK12270 116 EVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY 194 (1228)
T ss_pred ceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence 4578999999999999999 569999999999999999999999998887889999999999999999999999999999
Q ss_pred c--CCc--eeeeCccceEEEeecC-----CCeEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 014404 276 A--DEY--IRQFKNVNINVAVQTE-----NGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLG 346 (425)
Q Consensus 276 ~--~~~--i~~~~~i~i~~av~~~-----~gl~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~~l~~~d~~~~t~tISnlg 346 (425)
. |++ ++++++||||+||+++ +||+||+|+++++++|.+|.+++++++.|+|+|+|+++|++||||||||+|
T Consensus 195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G 274 (1228)
T PRK12270 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG 274 (1228)
T ss_pred eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence 7 555 9999999999999998 589999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeeCCCCeeEEeeccceEEeeecC----CCCceeEEeEEEEEEEecccccchHHHHHHHHHHHHHhc
Q 014404 347 GPFGIKQFCAIINPPQSGILAVGSAEKRVVPGL----GPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIE 418 (425)
Q Consensus 347 ~~~g~~~~~pii~~p~~ail~vG~i~~~~v~~~----~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le 418 (425)
+ ||+.+|+||||+||+|||++|++...+++.. ..+++.++++|+||+|||||+|||+++++||+.|+++|+
T Consensus 275 ~-iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 275 G-IGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred c-ccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 9 9999999999999999999999998877631 246899999999999999999999999999999999998
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.96 E-value=1.6e-27 Score=220.22 Aligned_cols=181 Identities=14% Similarity=0.142 Sum_probs=159.1
Q ss_pred ccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCCC
Q 014404 218 IPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENG 297 (425)
Q Consensus 218 iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~g 297 (425)
-|+|++|+++|||.|+++.|+. +++|++.+++|+++|++++|+||.++.+|+++.|+.+++++++..+++
T Consensus 30 ~~~fsiT~~iDiT~l~~~~K~~----------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~ 99 (219)
T PRK13757 30 QCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQT 99 (219)
T ss_pred CCceEEEEEEEHHHHHHHHHHc----------CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCC
Confidence 3559999999999999887765 389999999999999999999999999999999999999999998887
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHHHhcC-CCCCCCCCCCeEEEeeCCCCCCccceeeeeC-CC--CeeEEeeccceE
Q 014404 298 LYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQDYEGGTFTVTNLGGPFGIKQFCAIIN-PP--QSGILAVGSAEK 373 (425)
Q Consensus 298 l~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~-~l~~~d~~~~t~tISnlg~~~g~~~~~pii~-~p--~~ail~vG~i~~ 373 (425)
.++..++.....++.+|.+.+.+.++++++. .+.+.....+.|.||+++| +..+.++.-++ .. .+.++++|++.+
T Consensus 100 ~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW-~sFTs~~~~~~~~~~~~~P~it~GKy~~ 178 (219)
T PRK13757 100 ETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPW-VSFTSFDLNVANMDNFFAPVFTMGKYYT 178 (219)
T ss_pred ceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccC-cCccccccccccCCCCcCcEEEeeceEE
Confidence 6777899999999999999999999999876 3555556778999999999 99888765333 33 246899999987
Q ss_pred EeeecCCCCceeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcC
Q 014404 374 RVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 419 (425)
Q Consensus 374 ~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 419 (425)
+ +| |.+||||+++||.+|||+|+++|++.||++|++
T Consensus 179 ~------~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 179 Q------GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred E------CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 5 67 789999999999999999999999999999976
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.95 E-value=6e-27 Score=215.26 Aligned_cols=178 Identities=13% Similarity=0.171 Sum_probs=142.4
Q ss_pred cCccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCC-ceeeeCccceEEEeec
Q 014404 216 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE-YIRQFKNVNINVAVQT 294 (425)
Q Consensus 216 ~~iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~-~i~~~~~i~i~~av~~ 294 (425)
..-|.+++|.++|||+|+++.|+. +++|++++++++++|++++|+||.++.++ ++++|+.++++++|..
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~~----------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKEK----------GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH 92 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHHT----------T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHHc----------CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence 457999999999999999988765 38999999999999999999999999887 9999999999999997
Q ss_pred CCCeEEEEEecCCCCCHHHHHHHHHHHHHHHhcC-CCCCCC-CCCCeEEEeeCCCCCCccceeeeeCCC---CeeEEeec
Q 014404 295 ENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQD-YEGGTFTVTNLGGPFGIKQFCAIINPP---QSGILAVG 369 (425)
Q Consensus 295 ~~gl~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~-~l~~~d-~~~~t~tISnlg~~~g~~~~~pii~~p---~~ail~vG 369 (425)
+++..+..++.....++.+|.+.+.+.++++++. .+.++. ...+.|.+|+++| +..++++.-+..+ .+.++++|
T Consensus 93 ~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW-~~FTs~~~~~~~~~~~~~P~it~G 171 (206)
T PF00302_consen 93 KDDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPW-VSFTSFSHPVPNGKDDSIPRITWG 171 (206)
T ss_dssp TTTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETT-S--SEEEEEESSTTT-SS-EEEEE
T ss_pred CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccc-eecccccccccCCCcccccEEEee
Confidence 7655667788889999999999999999998764 355443 5678999999999 9999886544433 25789999
Q ss_pred cceEEeeecCCCCceeEEeEEEEEEEecccccchHHHHHHHHHHH
Q 014404 370 SAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFK 414 (425)
Q Consensus 370 ~i~~~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~ 414 (425)
++.++ +| |.+||||+++||.++||+|+++|++.||
T Consensus 172 K~~~~------~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 172 KYFEE------NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp --EEE------TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred eeEeE------CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 99886 67 8899999999999999999999999987
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.90 E-value=2.3e-22 Score=177.70 Aligned_cols=188 Identities=12% Similarity=0.146 Sum_probs=163.7
Q ss_pred cCccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecC
Q 014404 216 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTE 295 (425)
Q Consensus 216 ~~iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~ 295 (425)
...||+.++..+|+|.+....|+. +++|++++++|+.++++++++||.++.+|++++|+.+++.++|.++
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~vk~~----------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~ 95 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGYVKEN----------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHG 95 (219)
T ss_pred cccceEeeeeeeehhHHHHHHHHc----------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcC
Confidence 468999999999999999888765 4899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCHHHHHHHHHHHHHHHhcCC-CCCCCC-CCCeEEEeeCCCCCCccceeeeeCCCC---eeEEeecc
Q 014404 296 NGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNS-LKPQDY-EGGTFTVTNLGGPFGIKQFCAIINPPQ---SGILAVGS 370 (425)
Q Consensus 296 ~gl~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~~-l~~~d~-~~~t~tISnlg~~~g~~~~~pii~~p~---~ail~vG~ 370 (425)
++.++.+++-....++.+|++.....+++++++. +.++|- ......+||++| +.++.++.-+.-.. ..++.+|+
T Consensus 96 ~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPW-lsFtslS~~~~~~k~~~~PiF~~Gr 174 (219)
T COG4845 96 ETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPW-LSFTSLSHHYRRNKIYGQPIFYAGR 174 (219)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccc-cceeeeeeeccCCccccceeEeecc
Confidence 9888899999999999999999999999999775 333333 345677899999 88877665444221 35899999
Q ss_pred ceEEeeecCCCCceeEEeEEEEEEEecccccchHHHHHHHHHHHHHhcCccccc
Q 014404 371 AEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESML 424 (425)
Q Consensus 371 i~~~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll 424 (425)
..++ +| +-.|||++++||..+||.|+++|++.|+.++++|-.+.
T Consensus 175 f~~~------~G----kl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~~ 218 (219)
T COG4845 175 FYEE------DG----KLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCIP 218 (219)
T ss_pred eecc------CC----eEEEeEEEEecccccchhhHHHHHHHHHHHhcCCCCCC
Confidence 9875 88 45899999999999999999999999999999997654
No 24
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.73 E-value=6e-18 Score=130.63 Aligned_cols=70 Identities=41% Similarity=0.732 Sum_probs=68.1
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
||.+|..+.++++.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++| +.|.+|++|++|
T Consensus 5 ~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G-~~V~~G~~l~~I 74 (74)
T PF00364_consen 5 APMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEG-DTVEVGQVLAII 74 (74)
T ss_dssp ESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTT-EEEETTSEEEEE
T ss_pred CCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCC-CEECCCCEEEEC
Confidence 6999999999999999999999999999999999999999999999999999999999 799999999875
No 25
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.70 E-value=7.4e-17 Score=161.71 Aligned_cols=71 Identities=41% Similarity=0.695 Sum_probs=69.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++.+++| +.|.+|++|+.+.
T Consensus 7 ~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g-~~v~~g~~l~~i~ 77 (371)
T PRK14875 7 MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEG-ETLPVGALLAVVA 77 (371)
T ss_pred CCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCC-CEeCCCCEEEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999 7999999999884
No 26
>PRK06748 hypothetical protein; Validated
Probab=99.68 E-value=2.2e-16 Score=122.90 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=59.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe-cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet-~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++| +.|++|++|+++.
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~G-d~V~vG~~la~I~ 74 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEG-QAIADQKLLITVR 74 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCC-CEECCCCEEEEEE
Confidence 49999999999999999999999999 99999999999999999999999 7999999999984
No 27
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.56 E-value=2.2e-14 Score=109.79 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=59.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|+|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++| +.|..|++|+++
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G-~~V~~G~~l~~i 70 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVG-DVIQAGDLIAVI 70 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCC-CEECCCCEEEEE
Confidence 4999999999999999999999999999999999999999999999999 799999999976
No 28
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.55 E-value=6.5e-14 Score=143.67 Aligned_cols=78 Identities=55% Similarity=0.918 Sum_probs=72.4
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccccc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 78 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~~ 78 (425)
||++|++|+||+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|++.|++|++|+++.+++++.
T Consensus 7 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~~~ 84 (464)
T PRK11892 7 MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGESA 84 (464)
T ss_pred cCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCCcc
Confidence 799999999999999999999999999999999999999999999999999999999943799999999986655443
No 29
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.51 E-value=1.1e-13 Score=106.46 Aligned_cols=70 Identities=33% Similarity=0.638 Sum_probs=67.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
+|++|.++.+|++.+|++++||.|++||+|+++|++|+.++|.||.+|+|.+++++.| +.+..|+.|+.+
T Consensus 4 ~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g-~~v~~g~~l~~i 73 (73)
T cd06663 4 IPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG-TKVEGDTPLVKI 73 (73)
T ss_pred cCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCC-CEECCCCEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999 799999999864
No 30
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.51 E-value=4.4e-14 Score=122.37 Aligned_cols=62 Identities=24% Similarity=0.432 Sum_probs=59.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
-|++.+.+|++||+|++||+||.||+||+.++|+||.+|+|.+|++++| +.|..||+|+.|.
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G-~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNG-DPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCC-CccCCCCEEEEec
Confidence 3999999999999999999999999999999999999999999999999 7999999999873
No 31
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.46 E-value=4.5e-14 Score=93.85 Aligned_cols=38 Identities=53% Similarity=0.782 Sum_probs=34.2
Q ss_pred CcccChhHHhHHHHcCCCCCccccCCCCCccchhhHHH
Q 014404 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 169 (425)
Q Consensus 132 ~~~asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~ 169 (425)
++++||+||++|+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 56799999999999999999999999999999999985
No 32
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.46 E-value=4.1e-13 Score=102.51 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=58.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
|+|.+|++++||+|++||+|+++|+||+.+++.||.+|+|.++++++| +.|..|++|+.+
T Consensus 10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G-~~V~~g~~l~~i 69 (70)
T PRK08225 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEG-DFVNEGDVLLEI 69 (70)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCC-CEECCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999 799999999976
No 33
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.39 E-value=1.2e-12 Score=139.93 Aligned_cols=71 Identities=30% Similarity=0.441 Sum_probs=68.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
||+|| |.||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++| +.|++|++|+.+.++
T Consensus 7 ~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g-~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 7 VPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVG-DKVETGALIMIFESA 77 (633)
T ss_pred eCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCC-CEEeCCCEEEEEecc
Confidence 79999 999999999999999999999999999999999999999999999999999 799999999998554
No 34
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.38 E-value=1.8e-12 Score=110.05 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=59.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
..|+|.+|++++||.|++||+|+++|+||+.++|.||++|+|.++++++| +.|..|++|+.+
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~G-d~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPG-QVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCC-CEeCCCCEEEEe
Confidence 35999999999999999999999999999999999999999999999999 799999999876
No 35
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.37 E-value=1.8e-12 Score=137.28 Aligned_cols=73 Identities=38% Similarity=0.607 Sum_probs=70.4
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
||+||++|.||+|++|+|++||.|++||+||++||||++++|+||.+|+|.++++++| +.|++|++|+++...
T Consensus 7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~G-d~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 7 MPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEED-DTVDIGGEIAIIGEA 79 (590)
T ss_pred CCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCC-CEEeeeeeEEEEeec
Confidence 7999999999999999999999999999999999999999999999999999999999 799999999988653
No 36
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.32 E-value=5.6e-12 Score=110.26 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=59.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
..|+|.+|+|++||.|++||+|+++|+||++++|.||.+|+|.++++++| +.|..|++|+.+
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~G-d~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEG-DTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCC-CEECCCCEEEEe
Confidence 35999999999999999999999999999999999999999999999999 799999999976
No 37
>PRK07051 hypothetical protein; Validated
Probab=99.29 E-value=1.5e-11 Score=96.28 Aligned_cols=62 Identities=27% Similarity=0.412 Sum_probs=59.1
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 10 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 10 eg~i~~-------~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++| +.|..|++|+++.
T Consensus 11 ~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G-~~V~~G~~l~~i~ 79 (80)
T PRK07051 11 PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDG-EPVEAGQVLARIE 79 (80)
T ss_pred ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCc-CEECCCCEEEEEe
Confidence 488888 9999999999999999999999999999999999999999999 7999999999873
No 38
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.27 E-value=2.7e-11 Score=91.00 Aligned_cols=62 Identities=27% Similarity=0.498 Sum_probs=58.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.+|++.+|++++||.|++||+|++++++|+..+|+||++|+|.+++++.| +.|..|++|+.+
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G-~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEG-DQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCC-CEECCCCEEEEC
Confidence 45999999999999999999999999999999999999999999999999 799999999864
No 39
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.25 E-value=1.9e-11 Score=113.81 Aligned_cols=61 Identities=33% Similarity=0.519 Sum_probs=58.5
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~-------~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++| +.|.+|++|+.|
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeG-D~V~vGqpL~~I 272 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDG-KPVSVDTPLFVI 272 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCC-CEeCCCCEEEEe
Confidence 388888 9999999999999999999999999999999999999999999 799999999987
No 40
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.25 E-value=2.2e-11 Score=107.37 Aligned_cols=60 Identities=28% Similarity=0.499 Sum_probs=57.4
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 11 GNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 11 g~i~~-------~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
|++.. |+|++||.|++||+||.||+||+.++|+|+.+|+|.++++++| +.|..|++|+.+
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g-~~V~~Gq~L~~i 155 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENG-QPVEYGQPLIVI 155 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCC-CEECCCCEEEEE
Confidence 77776 9999999999999999999999999999999999999999999 799999999976
No 41
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.24 E-value=2.5e-11 Score=128.07 Aligned_cols=72 Identities=33% Similarity=0.542 Sum_probs=69.1
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
||++|+ |.+|+|++|+|++||.|++||+|++||+||+.++|.|+++|+|.++++++| +.|.+|++|+.+.+.
T Consensus 7 ~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~G-d~V~~G~~L~~i~~~ 78 (547)
T PRK11855 7 VPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVG-DTVSVGGLLAVIEAA 78 (547)
T ss_pred cCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCC-CEecCCceeeEeccc
Confidence 699999 999999999999999999999999999999999999999999999999999 799999999988543
No 42
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.21 E-value=5.2e-11 Score=125.28 Aligned_cols=71 Identities=34% Similarity=0.524 Sum_probs=68.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
||+||+. .+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++| +.|.+|++|+++..
T Consensus 5 ~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~G-d~V~~G~~La~i~~ 75 (546)
T TIGR01348 5 VPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVG-DTLPVGGVIATLEV 75 (546)
T ss_pred cCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCC-CEEeccceEEEEec
Confidence 7999987 89999999999999999999999999999999999999999999999999 79999999998853
No 43
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.20 E-value=5.5e-11 Score=104.82 Aligned_cols=60 Identities=27% Similarity=0.502 Sum_probs=57.0
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 11 GNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 11 g~i~~-------~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
|++.. |+|++||.|++||+||.||+||+.++|+||++|+|.+++++.| +.|..|++|+.+
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g-~~V~~Gq~L~~i 154 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENG-QPVEFGQPLFVI 154 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCC-CEeCCCCEEEEe
Confidence 66665 9999999999999999999999999999999999999999999 799999999976
No 44
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.15 E-value=1.1e-10 Score=122.79 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=59.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++| +.|.+|++|+.|.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~G-d~V~~G~~L~~I~ 594 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKG-DKVTPGQVLIRVE 594 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCc-CEECCCCEEEEEe
Confidence 3999999999999999999999999999999999999999999999999 7999999999874
No 45
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.08 E-value=1.2e-09 Score=82.36 Aligned_cols=70 Identities=56% Similarity=0.872 Sum_probs=66.9
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 1 ~P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
+|+++....+|++.+|++..|+.|..|++++.++++|+...+.++.+|++.+.++.+| +.+..|++|+++
T Consensus 5 ~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g-~~v~~g~~l~~~ 74 (74)
T cd06849 5 MPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEG-DTVPVGQVIAVI 74 (74)
T ss_pred CCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCc-CEeCCCCEEEEC
Confidence 5899999999999999999999999999999999999999999999999999999999 799999999864
No 46
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.02 E-value=6.3e-10 Score=126.43 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=59.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++| +.|.+||+|+.+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G-~~V~~G~~l~~i 1200 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPG-DMVDAGDIVAVL 1200 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCC-CEeCCCCEEEEe
Confidence 4999999999999999999999999999999999999999999999999 799999999976
No 47
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.00 E-value=6.3e-10 Score=117.47 Aligned_cols=58 Identities=31% Similarity=0.487 Sum_probs=56.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 68 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l 68 (425)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++| +.|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~G-d~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVG-DAVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCC-CEeCCCCCC
Confidence 4999999999999999999999999999999999999999999999999 799999975
No 48
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.98 E-value=1.5e-09 Score=114.66 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=59.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++| +.|..|++|+.+
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~G-d~V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEG-DAVAVGDTLLTL 592 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCC-CEECCCCEEEEe
Confidence 4999999999999999999999999999999999999999999999999 799999999976
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.92 E-value=2.6e-09 Score=120.41 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=59.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++| +.|.+|++|+.|
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G-~~V~~g~~l~~i 1142 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAG-EQIDAKDLLLVL 1142 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCC-CEECCCCEEEEe
Confidence 3999999999999999999999999999999999999999999999999 799999999976
No 50
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.83 E-value=9.2e-09 Score=109.03 Aligned_cols=61 Identities=26% Similarity=0.454 Sum_probs=59.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++| +.|..|++|+.+
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G-~~V~~G~~L~~i 590 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEG-DRVNPGDVLMEI 590 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCC-CEeCCCCEEEEe
Confidence 4999999999999999999999999999999999999999999999999 799999999987
No 51
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.80 E-value=9.2e-09 Score=104.53 Aligned_cols=62 Identities=27% Similarity=0.455 Sum_probs=59.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.|+|+.+.|++|+.|.+||+|+++|+|||+..|.||.+|+|.++.+.+| +.|..|++|+.+.
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~G-d~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEG-DQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCC-CccccCceEEEec
Confidence 3999999999999999999999999999999999999999999999999 7999999999873
No 52
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.73 E-value=2.6e-08 Score=112.93 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=59.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|+|++|+|++||.|++||+|+++|+||++.+|.||.+|+|.++++++| +.|..|++|+.+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g-~~V~~g~~l~~i 1144 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAG-DQVEAGDLLVEL 1144 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCC-CEECCCCEEEEE
Confidence 3999999999999999999999999999999999999999999999999 799999999987
No 53
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.64 E-value=4e-08 Score=103.04 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=61.4
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 4 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 4 ~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
+|..|. |.|+++.|+.||.|++||+|+.+|+|||+..|.||.+|+|.+++|.+| +.|..|+.|..+
T Consensus 1082 igApmp-G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~g-d~i~~gDLLi~~ 1147 (1149)
T COG1038 1082 IGAPMP-GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDG-DQIDGGDLLVVV 1147 (1149)
T ss_pred cCCCCC-CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCC-CccccCceEEEc
Confidence 345555 999999999999999999999999999999999999999999999999 799999999865
No 54
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.40 E-value=5.5e-07 Score=92.91 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=60.5
Q ss_pred CCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 5 SPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 5 ~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
|.-|. |+|+++.|++|+.|++||+|+++.+||+++-|.||.+|+|+++.+..| +.+.-|+.++.+
T Consensus 1110 gAPMp-G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g-~~~~g~DL~~~~ 1174 (1176)
T KOG0369|consen 1110 GAPMP-GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQG-TKVEGGDLIVEL 1174 (1176)
T ss_pred cCCCC-CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCC-CcccccceEEEc
Confidence 44444 999999999999999999999999999999999999999999999999 799999998876
No 55
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.32 E-value=1.1e-06 Score=71.30 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=42.9
Q ss_pred EEEEE-EEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCC
Q 014404 11 GNIAR-WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 58 (425)
Q Consensus 11 g~i~~-~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g 58 (425)
|.|.. |++++|+.|++||+|++||++|+..+|.||.+|+|.++..+.+
T Consensus 29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~ 77 (96)
T cd06848 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALL 77 (96)
T ss_pred CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhh
Confidence 56777 6667799999999999999999999999999999999887665
No 56
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.16 E-value=4.5e-06 Score=69.03 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=40.1
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 014404 11 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 57 (425)
Q Consensus 11 g~i~~~~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~ 57 (425)
|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++..+.
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l 77 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL 77 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence 44555555 679999999999999999999999999999999996443
No 57
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.04 E-value=1.1e-05 Score=67.21 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=38.8
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014404 11 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 54 (425)
Q Consensus 11 g~i~~~~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (425)
|.|+.+.. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 45555555 679999999999999999999999999999999884
No 58
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.99 E-value=5.4e-06 Score=83.51 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=57.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
|.|.+++|++||.|++||.|+++++||+..-+.||.+|+|+.+.++.| +.|.-|.+|..+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG-~~v~~g~vlv~~ 669 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAG-ATVGDGAVLVEF 669 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecC-cccCCCceEEEe
Confidence 799999999999999999999999999999999999999999999999 799999998865
No 59
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.99 E-value=1e-05 Score=70.34 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=42.8
Q ss_pred EEEEEEEcC-CCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 014404 11 GNIARWLKK-EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 57 (425)
Q Consensus 11 g~i~~~~v~-~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~ 57 (425)
|.|+.+.+. +|+.|++||++++||++|+..+|.||.+|+|.++..+-
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l 91 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEAL 91 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhh
Confidence 678888886 89999999999999999999999999999999987543
No 60
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.83 E-value=9.1e-06 Score=80.93 Aligned_cols=43 Identities=40% Similarity=0.726 Sum_probs=39.4
Q ss_pred CCcccChhHHhHHHHcCCCCCccccCCCCCccchhhHHHHHHh
Q 014404 131 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173 (425)
Q Consensus 131 ~~~~asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~~~~ 173 (425)
+++++||++|++|+++|||++.|+|||++|||+++||++|...
T Consensus 4 ~~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 4 DKLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred ccccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 3556899999999999999999999999999999999999753
No 61
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.82 E-value=7.5e-05 Score=76.46 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=57.4
Q ss_pred ceEEEEEEE-cCCCCeecCCCeEEEEEec------------------------------------------------cee
Q 014404 9 QEGNIARWL-KKEGDKVSPGEVLCEVETD------------------------------------------------KAT 39 (425)
Q Consensus 9 ~eg~i~~~~-v~~Gd~V~~g~~l~~vet~------------------------------------------------K~~ 39 (425)
..|.|.+++ +++||.|++||+|+++++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 359999998 9999999999999999831 123
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccc
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
..|.||++|+|.+..+.+| +.|..|++|+.|.+..
T Consensus 210 ~~I~AP~dGvV~~~~v~~G-~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAG-MNIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCC-CEECCCCeEEEEEcCC
Confidence 5799999999999999999 7999999999987644
No 62
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.78 E-value=6.7e-05 Score=74.51 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=31.7
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccc
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
..|.||++|+|..+.+++| +.|..|++|+.+.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G-~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVG-QVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCC-CEeCCCCeeEEEEcCC
Confidence 4699999999999999999 7999999999987653
No 63
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.75 E-value=4.8e-05 Score=84.73 Aligned_cols=64 Identities=25% Similarity=0.484 Sum_probs=59.3
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
-..|++++|+|+.|++|..||+-++||.|||.|.+.|+.+|+|. ...++| +.+..|++|+.+.-
T Consensus 691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G-~~i~aG~vlakL~l 754 (2196)
T KOG0368|consen 691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEG-DAIEAGSVLAKLTL 754 (2196)
T ss_pred CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCC-CccCccceeEEeec
Confidence 35699999999999999999999999999999999999999996 667999 79999999998754
No 64
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.71 E-value=8.4e-05 Score=73.25 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=56.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc---------------------------------------------------
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (425)
..|+|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999998720
Q ss_pred -------------------eeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 38 -------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 38 -------------------~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
-...|.||++|+|.++.++.| +.|..|++|+.+.+.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G-~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTG-EFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCC-CEecCCCeeEEEEeC
Confidence 024699999999999999999 799999999988664
No 65
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.70 E-value=0.00012 Score=62.45 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=45.4
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEE---EecCCCeeee---CCC-EEEEEe
Q 014404 11 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI---VKGDGSKEIK---VGE-VIAITV 72 (425)
Q Consensus 11 g~i~~~~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~---~~~~g~~~v~---~g~-~l~~~~ 72 (425)
|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++ +.... +.+. -|+ -|+.+.
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p-~~ln~~p~~~gWl~~v~ 105 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSP-ELVNEDPYGEGWLFKIK 105 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCc-HhhcCCCCCCceEEEEE
Confidence 34444443 67999999999999999999999999999999999 44433 2333 333 566553
No 66
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.66 E-value=7.8e-05 Score=73.32 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=56.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc---------------------------------------------------
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (425)
..|+|.+++|++||.|++||+|+.+++.-
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999997521
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 38 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 38 --------------------~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
-...|.||.+|+|..+.++.| +.+..|++|+.+.+.
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G-~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVG-AYVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCC-ceeCCCCcEEEEEcC
Confidence 134699999999999999999 799999999988653
No 67
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.64 E-value=0.00011 Score=73.44 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=31.6
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccc
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
..|.||++|+|.++.+++| +.|..|++|+.|.+.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G-~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVG-EFAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCC-CCcCCCCeEEEEecCC
Confidence 4699999999999999999 7999999999987653
No 68
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.56 E-value=0.00011 Score=62.54 Aligned_cols=46 Identities=26% Similarity=0.293 Sum_probs=38.7
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEec
Q 014404 11 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 56 (425)
Q Consensus 11 g~i~~~~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~ 56 (425)
|.|..+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 34444433 68999999999999999999999999999999988643
No 69
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.48 E-value=0.00025 Score=72.15 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.7
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccc
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
..|.||++|+|..+.++.| +.|..|++|+.+.+.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G-~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVG-AQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCC-CEeCCCCeEEEEEeCC
Confidence 4799999999999999999 7999999999887654
No 70
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.40 E-value=0.00036 Score=70.91 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=54.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc---------------------------------------------------
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (425)
..|+|.++++++||.|++||+|+.+++.-
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35999999999999999999999997721
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeeCC--CEEEEEecc
Q 014404 38 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 74 (425)
Q Consensus 38 --------------------~~~~i~a~~~G~v~~~~~~~g~~~v~~g--~~l~~~~~~ 74 (425)
....|.||++|+|.+.++++| +.|..| ++|+.+.+.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G-~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEG-ALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCC-CeecCCCCcceEEEEec
Confidence 123699999999999999999 799986 488877553
No 71
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.39 E-value=0.00031 Score=69.84 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=31.0
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
..|.||++|+|..+.+++| +.|..|++|+.+.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G-~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPG-TMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCC-CCcCCCCeEEEEecC
Confidence 5799999999999999999 799999999988654
No 72
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.36 E-value=0.00052 Score=70.04 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=54.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc---------------------------------------------------
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (425)
..|+|.++++++||.|++||+|++++...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 35999999999999999999999997510
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeeCCCE--EEEEecc
Q 014404 38 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEV--IAITVEE 74 (425)
Q Consensus 38 --------------------~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~--l~~~~~~ 74 (425)
-...|.||++|+|.+.+++.| +.|..|++ |+.+.+.
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G-~~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEG-ALVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCC-CEECCCCCceEEEEEec
Confidence 123599999999999999999 79999985 6666543
No 73
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.36 E-value=0.00021 Score=50.43 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 35999999999999999999999998754
No 74
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.27 E-value=0.00068 Score=68.88 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=55.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec----------------------------------------------------
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETD---------------------------------------------------- 36 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~---------------------------------------------------- 36 (425)
..|+|.++++++||.|++||+|++++..
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 3599999999999999999999999862
Q ss_pred ---------c----------eeeEEecCCCeEEEEEEecCCCeeeeCCC--EEEEEecc
Q 014404 37 ---------K----------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVEE 74 (425)
Q Consensus 37 ---------K----------~~~~i~a~~~G~v~~~~~~~g~~~v~~g~--~l~~~~~~ 74 (425)
| ....|.||++|+|.+..++.| +.|..|+ +|+.+.+.
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G-~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVG-ALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCC-CeECCCCCcceEEEEec
Confidence 0 124799999999999999999 7999985 67777553
No 75
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.25 E-value=0.00066 Score=47.93 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
++.|.||.+|+|.++++++| +.|+.|++|+.+..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G-~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEG-QQVKKGDVLLVLDS 35 (50)
T ss_pred eEEEeCCCCEEEEEEEecCC-CEEcCCCEEEEECc
Confidence 36799999999999999999 79999999998844
No 76
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.25 E-value=0.00069 Score=57.32 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=34.5
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014404 11 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 54 (425)
Q Consensus 11 g~i~~~~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (425)
|.|+.+.. ++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 45555554 669999999999999999999999999999999885
No 77
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.09 E-value=0.0014 Score=66.19 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=25.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
..|.|.+|++++||.|++||+|++++.
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 359999999999999999999999986
No 78
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.08 E-value=0.0011 Score=68.16 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=53.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc---------------------------------------------------
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (425)
..|+|.++++++||.|++||+|++++...
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999996521
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeeCCC--EEEEEec
Q 014404 38 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVE 73 (425)
Q Consensus 38 --------------------~~~~i~a~~~G~v~~~~~~~g~~~v~~g~--~l~~~~~ 73 (425)
-...|.||++|+|..+.++.| +.|..|+ +|+.+.+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G-~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVG-NQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCC-ceecCCCCceeEEEec
Confidence 023699999999999999999 7999985 6776654
No 79
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0009 Score=56.48 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=38.7
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014404 11 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 54 (425)
Q Consensus 11 g~i~~~~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (425)
|.|+.+.. ++|+.|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 45555544 789999999999999999999999999999998774
No 80
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.90 E-value=0.00067 Score=66.83 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=20.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
..|+| +|+|++||.|++||+|+++++
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 35999 999999999999999999988
No 81
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.80 E-value=0.0027 Score=62.94 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=27.6
Q ss_pred EEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 41 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
.|.||++|+|..+.+..| +.|.. ++|+.+.+.
T Consensus 206 ~i~AP~dG~V~~~~~~~G-~~v~~-~~l~~i~~~ 237 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREG-EVIGS-EGILEMGDT 237 (327)
T ss_pred EEECCCCeEEEEEecCCC-CccCC-CccEEEecC
Confidence 688999999999999999 68876 888877654
No 82
>PRK12784 hypothetical protein; Provisional
Probab=96.68 E-value=0.013 Score=44.35 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=57.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec-ceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~-K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
-.|+|.++++.+++.|-+=++|+-|+++ +.-..|.--++|.|.-+.+++| +.+..+..|+++.+
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~G-q~i~~dtlL~~~ed 76 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVG-QQIHTDTLLVRLED 76 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecC-ceecCCcEEEEEee
Confidence 4699999999999999999999999995 4445588899999999999999 79999999998754
No 83
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.47 E-value=0.0092 Score=56.31 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=47.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.|.+ +..++.||.|++||+|+.|+. .+|.||.+|+|..+. ++| -.|..|.-|+.|
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli-rdG-~~V~~G~Ki~dI 226 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI-HEG-LTVTEGLKIGDV 226 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe-cCC-CCcCCCCEEEEE
Confidence 3444 449999999999999999975 799999999999875 789 699999999877
No 84
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.43 E-value=0.0077 Score=57.54 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=31.2
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
.+.|.||++|+|..+.+..| +.+..|++|+.+.+.
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G-~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLG-DYVAPQAELFRVADL 122 (265)
T ss_pred eEEEECCCCeEEEEEEcCCC-CEeCCCCceEEEEcC
Confidence 34689999999999999999 799999999988654
No 85
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.34 E-value=0.0063 Score=49.63 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEe
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 55 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~ 55 (425)
|.-.+-.|++||.|++||.|++.+. -....|-||.+|+|..|.-
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 4456788999999999999999974 6688999999999999863
No 86
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.20 E-value=0.0097 Score=45.16 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=29.3
Q ss_pred EEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 41 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.|.||.+|+|.++++++| +.|+.||+|+.+..
T Consensus 4 ~v~a~~~G~i~~~~v~~G-d~V~~g~~l~~ve~ 35 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEG-DQIGKGDTLVLLES 35 (71)
T ss_pred EEeCCCCEEEEEEEeCCC-CEECCCCEEEEEEe
Confidence 589999999999999999 79999999997743
No 87
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=95.99 E-value=0.021 Score=57.01 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=30.8
Q ss_pred EEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccc
Q 014404 41 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
.|.||.+|+|.+..++.| +.|.+|++|+.+++.+
T Consensus 210 ~IrAP~dG~V~~~~v~~G-~~V~~G~~l~alVp~~ 243 (352)
T COG1566 210 VIRAPVDGYVTNLSVRVG-QYVSAGTPLMALVPLD 243 (352)
T ss_pred EEECCCCceEEeecccCC-CeecCCCceEEEeccc
Confidence 489999999999999999 7999999999887643
No 88
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.85 E-value=0.028 Score=57.43 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=29.0
Q ss_pred EEecCCCeEEEEEEe-cCCCeeeeCCCEEEEEecc
Q 014404 41 EMECMEEGYLAKIVK-GDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 41 ~i~a~~~G~v~~~~~-~~g~~~v~~g~~l~~~~~~ 74 (425)
.|.||++|+|..+.+ ..| +.|..|++|+.+.+.
T Consensus 273 ~i~AP~dG~V~~~~~~~~G-~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVG-GVVQPGETLMEIVPE 306 (423)
T ss_pred EEECCCCcEEEEEEEEccC-ceecCCCeeEEEecC
Confidence 599999999999876 699 799999999988754
No 89
>PRK06748 hypothetical protein; Validated
Probab=95.73 E-value=0.019 Score=45.00 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=29.5
Q ss_pred EEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 41 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
-|.||..|+|.+|++++| |.|+.||+|+.+..
T Consensus 6 ~v~sp~~G~I~~w~vk~G-D~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRES-SYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCC-CEECCCCEEEEEEc
Confidence 388999999999999999 79999999998855
No 90
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.60 E-value=0.016 Score=43.80 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~ve 34 (425)
.+|+|.+|++++||.|+.||+|+++|
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 67999999999999999999999986
No 91
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.53 E-value=0.049 Score=53.39 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=45.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe---cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet---~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
+....++.||.|++||.|++|=. +....+|.||.+|+|.-+. .. -.|..|+.|+.|
T Consensus 239 l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~-p~v~~G~~l~~i 297 (298)
T cd06253 239 IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EY-PLVYEGSLVARI 297 (298)
T ss_pred EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cC-CeecCCceEEEe
Confidence 56778999999999999999844 4567789999999997654 44 479999999875
No 92
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.32 E-value=0.054 Score=54.51 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=45.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet----~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
|=+.+.+++.||.|++||.|++|=. +....+|.||++|+|.-+. .. -.|..|+.|+.|
T Consensus 297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~-~~V~~G~~l~~I 358 (359)
T cd06250 297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SR-RFVRAGDELAKI 358 (359)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CC-ccccCCCeEEEe
Confidence 4467889999999999999999833 3445557999999997654 55 479999999865
No 93
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.31 E-value=0.063 Score=52.31 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=44.1
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe--cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet--~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
+.++.++.||.|++||+|++|-. .....+|.||.+|+|.-+. .. -.|..|+.|+.+
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~-~~v~~G~~l~~i 286 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NL-PLVNEGDALFHI 286 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CC-CccCCCCEEEEe
Confidence 45679999999999999999954 1234789999999997654 33 368899998865
No 94
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.83 E-value=0.11 Score=51.32 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=46.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet----~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.-.. .. -.|..|+.|+.+.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~-~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PP-GLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CC-CccCCCCEEEEEe
Confidence 3356788999999999999999844 2456789999999997554 33 3688899988764
No 95
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=94.82 E-value=0.049 Score=40.02 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=28.4
Q ss_pred EecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 42 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
|.||.+|+|.++++++| +.|+.|++|+.+..
T Consensus 2 v~a~~~G~v~~~~v~~G-~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEG-DKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCC-CEECCCCEEEEEEc
Confidence 68999999999999999 79999999998743
No 96
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.82 E-value=0.033 Score=52.82 Aligned_cols=42 Identities=36% Similarity=0.515 Sum_probs=34.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeccee--eEEecCCCeEEEEEEe
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKAT--VEMECMEEGYLAKIVK 55 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~--~~i~a~~~G~v~~~~~ 55 (425)
|..-+.+|++||.|++||+|++ ||-. +-..||.+|+|.+|..
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 4445889999999999999994 6554 4478999999999975
No 97
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.69 E-value=0.05 Score=47.16 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
...|.||..|++.++++++| |.|+.||+|+++..
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vG-d~V~~Gq~l~IiEA 103 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVG-DTVKAGQTLAIIEA 103 (140)
T ss_pred CceEecCcceEEEEEeeccC-CEEcCCCEEEEEEe
Confidence 45699999999999999999 79999999998843
No 98
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.47 E-value=0.11 Score=51.19 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=49.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe---cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet---~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.++=+++.+|+.||.|++||.|+.|=. -+...||.|+.+|+|...... + .++.|+.+..+.
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~-~--~v~~Gdl~~~v~ 325 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL-R--LVQPGDLLKVVG 325 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec-c--ccCCCCeeeeec
Confidence 346688999999999999999998865 488999999999999887643 2 578887776654
No 99
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.36 E-value=0.14 Score=50.74 Aligned_cols=56 Identities=32% Similarity=0.415 Sum_probs=44.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet----~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
+....++.||.|++||+|++|=. .....+|.||.+|+|.-.. .. -.|..|+.|+.+
T Consensus 265 i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~-~~V~~Gd~l~~i 324 (325)
T TIGR02994 265 LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FP-GLIKSGDCIAVL 324 (325)
T ss_pred EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CC-CccCCCCEEEEe
Confidence 44678999999999999999843 2346789999999997654 44 379999998865
No 100
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.30 E-value=0.066 Score=43.52 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=21.9
Q ss_pred EecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 42 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
|.||++|+|..+.++.| +.+..|++|+.+.+.
T Consensus 2 i~AP~~G~V~~~~~~~G-~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPG-EVVSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCC-CEECCCCEEEEEEcc
Confidence 56777777777777777 577777777766553
No 101
>PRK07051 hypothetical protein; Validated
Probab=93.85 E-value=0.088 Score=40.92 Aligned_cols=26 Identities=31% Similarity=0.718 Sum_probs=24.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~ve 34 (425)
.+|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 47999999999999999999999985
No 102
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.64 E-value=0.11 Score=45.23 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=34.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EecCCCeEEEEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIV 54 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~-i~a~~~G~v~~~~ 54 (425)
||..+-..+.+|+.|.+||.|+-+.|-|-++. +.||++|+|.=+.
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 67778889999999999999999999999887 8999999997554
No 103
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.37 E-value=0.15 Score=43.46 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
...|.||.+|+|.++++++| +.|+.|++|+.+..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~G-d~V~~Gq~L~~lEa 94 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVG-DQVTENQPLLILEA 94 (130)
T ss_pred CcEEECCCCEEEEEEEeCCC-CEECCCCEEEEEec
Confidence 56699999999999999999 79999999998743
No 104
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.24 E-value=0.2 Score=48.76 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=38.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe--cceeeEEecCCCeEEEEEEecCCCeeeeCCCEE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 68 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet--~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l 68 (425)
+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+.. . -.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~-~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--T-LPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--C-CccCCCCcc
Confidence 3466778889999999999998822 23456789999999865542 2 246666654
No 105
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=93.06 E-value=3.9 Score=42.62 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=87.7
Q ss_pred EeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhC--CCCC--c-ee-----cCCceeeeC------cc
Q 014404 223 LTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKV--PRCN--S-SW-----ADEYIRQFK------NV 286 (425)
Q Consensus 223 ~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~--P~ln--~-~~-----~~~~i~~~~------~i 286 (425)
....++-+.+.++++..++ .+.|++.+|..+++.||.+. |... . .+ .+.+-+... ..
T Consensus 252 ~~~~i~~~~~~~ll~~CR~-------~~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~p~~~~~~~~~ 324 (480)
T PF07247_consen 252 RSLSISPEELKKLLKACRK-------HGTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFLPEDSELRDEY 324 (480)
T ss_pred EEEEECHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCCCccccccccc
Confidence 3456666666666555542 25899999999999999973 2221 1 11 111111111 11
Q ss_pred ceEEEeecCCCeEEEEEecC-----CCCCHHHHHHHHHHHHHH-HhcCC-CC------------CCC-----------CC
Q 014404 287 NINVAVQTENGLYVPVIRDA-----DKKGLSTIAEEVRQLAQK-AKDNS-LK------------PQD-----------YE 336 (425)
Q Consensus 287 ~i~~av~~~~gl~~pvi~~~-----~~~sl~ei~~~~~~l~~~-a~~~~-l~------------~~d-----------~~ 336 (425)
..|..|...+ +.+.+... ...++-++++++++...+ ...+. +. -.| ..
T Consensus 325 ~~g~~v~~~~--~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~r 402 (480)
T PF07247_consen 325 SYGNFVGGID--FSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSKIGKPR 402 (480)
T ss_pred cceeEEEccc--eeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhhcCCCC
Confidence 2233332211 11112221 123567788877765544 33221 10 001 13
Q ss_pred CCeEEEeeCCCCCCcc----c-eee-eeCCCC---eeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccccchHHH-
Q 014404 337 GGTFTVTNLGGPFGIK----Q-FCA-IINPPQ---SGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIG- 406 (425)
Q Consensus 337 ~~t~tISnlg~~~g~~----~-~~p-ii~~p~---~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~a- 406 (425)
++||.|||||. +... + ..- ....+. .+.+.+.-+ ...+| -|++++++=.-+++=...
T Consensus 403 ~~t~evSNLG~-~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~vi------S~~~G------~L~i~~s~~~~~~~~~~~~ 469 (480)
T PF07247_consen 403 RSTFEVSNLGV-FDFEENGKWKIEDMVFSQSAGVIGSAFSFNVI------STKGG------GLNISISWQEGIVEDEEME 469 (480)
T ss_pred CCcEEEEeCCc-ccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEE------EcCCC------ceEEEEEEeCCcccccchH
Confidence 68999999998 7630 0 000 111111 111222222 11234 489999998888876666
Q ss_pred HHHHHHHHHHh
Q 014404 407 AEWLKAFKGYI 417 (425)
Q Consensus 407 a~Fl~~l~~~l 417 (425)
-.|++.|++.|
T Consensus 470 ~~~~~~~~~~~ 480 (480)
T PF07247_consen 470 DEFMELFKQNL 480 (480)
T ss_pred HHHHHHHHhhC
Confidence 58999988765
No 106
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.01 E-value=0.13 Score=53.02 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=37.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEe
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 55 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~ 55 (425)
|.--+..|++||+|++||+|++-... ..+.+.||.+|+|..|..
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 55567899999999999999976543 578899999999999953
No 107
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=92.45 E-value=0.89 Score=44.83 Aligned_cols=28 Identities=36% Similarity=0.674 Sum_probs=25.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
..|+|.+++|++||+|+.||.|+.|++.
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 4599999999999999999999999875
No 108
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.30 E-value=0.24 Score=43.52 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
...|.||.+|+|.++++++| |.|..||+|+.+.
T Consensus 84 ~~~v~ap~~G~I~~~~V~~G-d~V~~Gq~l~~iE 116 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREG-QQVKVGQGLLILE 116 (153)
T ss_pred CCEEECCCCeEEEEEEeCCC-CEEcCCCEEEEEe
Confidence 35699999999999999999 7999999999874
No 109
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=92.20 E-value=2.8 Score=43.15 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=86.5
Q ss_pred EeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCCceecCCceeeeCccceEEEeecCC------
Q 014404 223 LTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTEN------ 296 (425)
Q Consensus 223 ~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln~~~~~~~i~~~~~i~i~~av~~~~------ 296 (425)
.+..+++..+.+..++. +.|++++++.|++.+|.++ ++.+ ++ .....+.+++.|+.-.
T Consensus 232 ~~~~~~~~~l~~~a~~~----------g~T~ndvllaa~~~al~~~--~~~~--~~--~~~~~i~~~~pv~~R~~~~~~~ 295 (446)
T TIGR02946 232 AAQSLPLADVKAVAKAF----------GVTINDVVLAAVAGALRRY--LEER--GE--LPDDPLVAMVPVSLRPMEDDSE 295 (446)
T ss_pred EeeccCHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHH--HHHc--CC--CCCCceEEEEeeeccccccCCC
Confidence 34556666665553322 4899999999999999885 2221 11 2223466777776311
Q ss_pred -C----eEEEEEecCCCCCHHHHHHHHHHHHHHHhcCC-------------CCC-------------CCCCCCeEEEeeC
Q 014404 297 -G----LYVPVIRDADKKGLSTIAEEVRQLAQKAKDNS-------------LKP-------------QDYEGGTFTVTNL 345 (425)
Q Consensus 297 -g----l~~pvi~~~~~~sl~ei~~~~~~l~~~a~~~~-------------l~~-------------~d~~~~t~tISnl 345 (425)
| .++..+. ....+..+...++++....+++.. +.| ......+++|||+
T Consensus 296 ~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNv 374 (446)
T TIGR02946 296 GGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNV 374 (446)
T ss_pred CCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCC
Confidence 2 1211121 233445555566666555555431 011 0011348899999
Q ss_pred CCCCCccc--------eeeeeCCCCeeEEeeccceEEeeecCCCCceeEEeEEEEEEEecccccchHHHHHHHHHHHHHh
Q 014404 346 GGPFGIKQ--------FCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYI 417 (425)
Q Consensus 346 g~~~g~~~--------~~pii~~p~~ail~vG~i~~~~v~~~~~g~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~l 417 (425)
+++-.-.+ +.++..+..-..++++-.. -+| .|.+++++|-.++.. ..+|.+.|.+.|
T Consensus 375 pg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-------y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l 439 (446)
T TIGR02946 375 PGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-------YNG------QLDFGLLADRDAVPD--PQELADALEAAL 439 (446)
T ss_pred CCCCcccEecCeeEEEeeccccccCCCeEEEEEEe-------cCC------eEEEEEeechhhCCC--HHHHHHHHHHHH
Confidence 87221111 1122111111112222111 134 599999999988873 777877777766
Q ss_pred cC
Q 014404 418 EN 419 (425)
Q Consensus 418 e~ 419 (425)
+.
T Consensus 440 ~~ 441 (446)
T TIGR02946 440 EE 441 (446)
T ss_pred HH
Confidence 53
No 110
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=92.16 E-value=0.26 Score=37.63 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.7
Q ss_pred EEecCCCeEEEE------EEecCCCeeeeCCCEEEEEecc
Q 014404 41 EMECMEEGYLAK------IVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 41 ~i~a~~~G~v~~------~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
+|.+|..|.+.+ +++++| +.|+.||+|+.+...
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G-~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEG-DKVKKGDPLAEIETM 40 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTT-EEESTTSEEEEEESS
T ss_pred EEECCCCccEEEecceeEEEECCC-CEEEcCceEEEEEcC
Confidence 578888887665 999999 899999999988543
No 111
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.12 E-value=0.18 Score=52.17 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=36.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 54 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (425)
|.--+..|++||+|++||.|++-... ....+.||.+|+|..|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 44557899999999999999965544 46889999999999994
No 112
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=91.72 E-value=0.32 Score=48.61 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=34.7
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 31 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 31 ~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+.|+++ .+.|.++.+|+|.++++++| +.|+.||+|+.+..
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G-~~VkkGq~L~~ld~ 81 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTEN-QAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCC-CEEcCCCEEEEECc
Confidence 455654 68899999999999999999 79999999999843
No 113
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.72 E-value=0.19 Score=48.74 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=23.6
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..|.++.+|+|.+|++++| +.|+.|++|+.+.+
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG-~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEG-QRVKKGQVLARLDP 34 (305)
T ss_dssp EEE--SS-EEEEEE-S-TT-EEE-TTSECEEE--
T ss_pred EEEeCCCCeEEEEEEccCc-CEEeCCCEEEEEEe
Confidence 5789999999999999999 89999999999854
No 114
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.71 E-value=0.13 Score=50.00 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=21.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
..|.|.+++|++||.|++||+|++++.-.
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 46999999999999999999999998643
No 115
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=91.21 E-value=0.41 Score=55.22 Aligned_cols=61 Identities=10% Similarity=0.197 Sum_probs=47.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
|+..++.|+.++.+..++.....+... ...|.||..|.|.++++++| +.|+.||+|+.+..
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~~~-~~~I~a~~~G~v~~~~v~~G-d~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADPGN-PAHVGAPMPGVIIEVKVSSG-QAVNKGDPLVVLEA 1107 (1143)
T ss_pred CeEEEEEecCccccccccccccccccc-CceeecCCCcEEEEEEeCCC-CEeCCCCEEEEEEe
Confidence 456667777777777666655443322 35699999999999999999 79999999998854
No 116
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.87 E-value=0.3 Score=48.36 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=31.3
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+.|.|+.+|+|.++++++| +.|+.||+|+.+..
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G-~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDT-DYVKQGDVLVRLDP 75 (334)
T ss_pred eEEEcccCceEEEEEEeCCC-CEEcCCCEEEEECc
Confidence 67899999999999999999 79999999999843
No 117
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=90.85 E-value=0.25 Score=51.05 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 54 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (425)
|.-.+..|++||+|+.||.|++-+ ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 334468999999999999999883 3358899999999999885
No 118
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=90.43 E-value=0.54 Score=48.29 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 12 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.|.-..++.|+.-..-+....|+.. -.+.|.++.+|+|.++++++| +.|+.||+|+.+..
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG-~~VkkGq~La~ld~ 120 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEG-QQVKAGDLLAEIDP 120 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCC-CEecCCCEEEEECc
Confidence 4555566666655555667788875 478899999999999999999 79999999999843
No 119
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=90.37 E-value=0.45 Score=47.04 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=35.3
Q ss_pred EEEEecceeeEEecCCC---eEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 31 CEVETDKATVEMECMEE---GYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 31 ~~vet~K~~~~i~a~~~---G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+.|+...-...|.++.+ |+|.++++++| +.|+.|++|+.+..
T Consensus 5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG-~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEG-DRVQAGQVLAELDS 49 (327)
T ss_pred ceEeecCceEEecCCCCCCCcEEEEEEccCC-CEecCCcEEEEecC
Confidence 34555555678899999 99999999999 79999999999844
No 120
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=90.32 E-value=0.26 Score=37.84 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=21.5
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
+.-+.=+.++++.||.|++||+|++|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 445556789999999999999999986543
No 121
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=90.20 E-value=0.19 Score=43.79 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=36.0
Q ss_pred CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 014404 19 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 57 (425)
Q Consensus 19 ~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~ 57 (425)
++|-.|.+||.++.||+=|+.-+|.+|.+|.|.+|.-+-
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l 127 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL 127 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence 789999999999999999999999999999999986443
No 122
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=90.07 E-value=0.67 Score=46.72 Aligned_cols=59 Identities=12% Similarity=0.203 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 12 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.+.-+.++.|+.-..=..-+.|+... .+.|.|+.+|.|.++++++| +.|+.|++|+.+.
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G-~~V~kG~~L~~ld 93 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIG-DKVKKDQLLGVID 93 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCC-CEEcCCCEEEEEC
Confidence 34445555555433333445666554 56899999999999999999 7999999999883
No 123
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=89.77 E-value=0.4 Score=47.17 Aligned_cols=40 Identities=35% Similarity=0.513 Sum_probs=33.0
Q ss_pred EEEcCCCCeecCCCeEEEEEeccee--eEEecCCCeEEEEEEecC
Q 014404 15 RWLKKEGDKVSPGEVLCEVETDKAT--VEMECMEEGYLAKIVKGD 57 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~vet~K~~--~~i~a~~~G~v~~~~~~~ 57 (425)
...|++||.|++||+|+| ||-. +-++||.+|+|..|...+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 568999999999999995 5543 558999999999997543
No 124
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=89.42 E-value=0.7 Score=45.13 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=33.4
Q ss_pred EEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 32 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 32 ~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.|+..+ ...|.+|.+|+|.++++++| +.|+.|++|+.+.
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G-~~V~kG~~L~~l~ 58 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREG-QKVKKGQVLARLD 58 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCC-CEEcCCCEEEEEC
Confidence 444444 56899999999999999999 7999999999884
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=89.28 E-value=0.86 Score=46.23 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=44.1
Q ss_pred EEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 15 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
-..++.++.-..-..-+.|+.+. ..+|.++.+|+|.++++++| +.|+.||+|+.+.
T Consensus 40 v~~v~~~~~~~~i~~~G~v~~~~-~~~l~~~v~G~V~~v~v~~G-d~VkkGq~La~ld 95 (385)
T PRK09578 40 VVTVRPTSVPMTVELPGRLDAYR-QAEVRARVAGIVTARTYEEG-QEVKQGAVLFRID 95 (385)
T ss_pred EEEEEEecccceEEEEEEEEEee-EEEEeccCcEEEEEEECCCC-CEEcCCCEEEEEC
Confidence 34555555444445567788765 67999999999999999999 7999999999983
No 126
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=89.22 E-value=0.91 Score=46.08 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=46.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
|.-..++.|+....-+..+.|+..+ ...|.++.+|+|.++++++| +.|+.||+|+.+.
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G-~~VkkGqvLa~ld 93 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEG-DKVNQGDSLYQID 93 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCc-CEecCCCEEEEEC
Confidence 3334556666555556677887765 67899999999999999999 7999999999984
No 127
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=88.78 E-value=0.38 Score=49.79 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=35.9
Q ss_pred EEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014404 14 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 54 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (425)
...+|++||.|.+||+|.+=+. ...-+.||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5788999999999999998776 88999999999999997
No 128
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=88.33 E-value=0.48 Score=46.42 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 31 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 31 ~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+.|+. -+..|.++.+|.| ++++++| +.|+.|++|+.+..
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G-~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEG-DKVKKGQVLAELDS 53 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TT-SEEETT-EEEEEE-
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCc-CEECCCCEEEEEEC
Confidence 45555 4677999999999 9999999 79999999999854
No 129
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=88.32 E-value=1.6 Score=42.71 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe--cceeeEEecCCCeEEEEE
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKI 53 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet--~K~~~~i~a~~~G~v~~~ 53 (425)
+.+..++.||.|++||.|++|-. .....++.||.+|+|.-+
T Consensus 241 i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 241 LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 34455566666666666665522 011234566666665433
No 130
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.32 E-value=0.93 Score=47.17 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=33.8
Q ss_pred EEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 33 VETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
|..+.-...|.++..|+|.++++++| +.|+.|++|+.+.+
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG-~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKEN-KFVKKGDLLVVYDN 92 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCC-CEecCCCEEEEECc
Confidence 44444456789999999999999999 79999999999854
No 131
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.18 E-value=0.84 Score=46.52 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=37.0
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 31 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 31 ~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+.|........|.++.+|+|.++++++| +.|+.|++|+.+..
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG-~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREG-DRVKAGQVLVELDA 76 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCC-CEecCCCeEEEEcc
Confidence 4666777788899999999999999999 79999999998844
No 132
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=87.83 E-value=0.73 Score=45.66 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=33.9
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 31 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 31 ~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..|+. -.+.|.|+.+|+|.++++++| +.|+.|++|+.+..
T Consensus 37 G~v~~--~~i~v~a~~~G~V~~i~v~~G-d~V~kG~~L~~ld~ 76 (331)
T PRK03598 37 GNVDI--RTVNLGFRVGGRLASLAVDEG-DAVKAGQVLGELDA 76 (331)
T ss_pred EEEee--EEEEeecccCcEEEEEEcCCC-CEEcCCCEEEEECh
Confidence 34554 267899999999999999999 79999999999843
No 133
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=87.69 E-value=0.49 Score=51.68 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=35.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 54 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (425)
|.-.+..|++||+|.+||+|++-.. -..+.|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 4445789999999999999996532 257889999999999885
No 134
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=87.58 E-value=0.71 Score=45.47 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+.|.++.+|.|.++++++| +.|+.||+|+.+..
T Consensus 47 ~v~i~~~v~G~V~~v~V~~G-d~VkkGqvLa~Ld~ 80 (310)
T PRK10559 47 VVAIAPDVSGLITQVNVHDN-QLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEEccCCceEEEEEEeCCc-CEEcCCCEEEEECc
Confidence 36799999999999999999 79999999999843
No 135
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=87.22 E-value=0.86 Score=46.42 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=31.5
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+.|.++.+|+|.++++++| +.|+.||+|+.+..
T Consensus 61 ~v~v~a~v~G~V~~v~V~~G-d~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNT-DFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCC-CEECCCCEEEEECc
Confidence 78899999999999999999 79999999999843
No 136
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.09 E-value=1.1 Score=46.13 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=32.4
Q ss_pred cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 36 DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 36 ~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..-...|.++.+|+|.++++++| +.|+.|++|+.+..
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG-~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVG-DQVKKGQVVARLFQ 91 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCc-CEECCCCEEEEECc
Confidence 34456899999999999999999 79999999999854
No 137
>PF13437 HlyD_3: HlyD family secretion protein
Probab=86.90 E-value=1.4 Score=35.60 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=25.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
..|.|..+.+++|+.|.+|++|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 4699999999999999999999999753
No 138
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=86.77 E-value=0.65 Score=47.73 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=26.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
..|.|.+++|++||.|++||+|+.+++..
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence 56999999999999999999999998753
No 139
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=86.71 E-value=1.4 Score=44.90 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=36.4
Q ss_pred CeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 28 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 28 ~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
...+.|++.. .++|.++.+|+|.++++++| +.|+.||+|+.+.
T Consensus 55 ~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~G-d~VkkGqvLa~ld 97 (397)
T PRK15030 55 ELPGRTSAYR-IAEVRPQVSGIILKRNFKEG-SDIEAGVSLYQID 97 (397)
T ss_pred EEEEEEEEEE-EEEEEecCcEEEEEEEcCCC-CEecCCCEEEEEC
Confidence 3445666544 77899999999999999999 7999999999984
No 140
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.84 E-value=0.74 Score=47.90 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.6
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
...|.|.+++|++||.|++||+|+.++..-
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 456999999999999999999999997643
No 141
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=84.81 E-value=0.89 Score=35.92 Aligned_cols=24 Identities=46% Similarity=0.942 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEEec
Q 014404 13 IARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
-++|++++|+.|++||+|++++.+
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEeC
Confidence 467999999999999999999863
No 142
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.53 E-value=2.2 Score=36.13 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=37.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EecCCCeEEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKI 53 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~-i~a~~~G~v~~~ 53 (425)
.||-++-.-+.+|+.|.+||+++-|.|-|-.+. +++|.+|++.=+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 467788888889999999999999999888887 778888888533
No 143
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=84.40 E-value=1.1 Score=46.35 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=26.4
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEec
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
-.+|+|.+|++++||.|..||+|+.|+.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 46799999999999999999999999754
No 144
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=84.06 E-value=1.5 Score=38.71 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=29.2
Q ss_pred eEEecCCCeEEEE-------EEecCCCeeeeCCCEEEEEec
Q 014404 40 VEMECMEEGYLAK-------IVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 40 ~~i~a~~~G~v~~-------~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..|.||..|++.. +++++| +.|..||+|+.+..
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~G-d~V~~Gq~l~iiEa 120 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVG-DKVKKGQIVCIVEA 120 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCC-CEeCCCCEEEEEEe
Confidence 4699999999987 689999 79999999998754
No 145
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=83.96 E-value=1.4 Score=41.84 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=29.5
Q ss_pred eEEecCCCeEEEE-------EEecCCCeeeeCCCEEEEEec
Q 014404 40 VEMECMEEGYLAK-------IVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 40 ~~i~a~~~G~v~~-------~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..|.||..|++.+ +++++| |.|+.||+|+.+..
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvG-DsVkkGQvLavIEA 237 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVG-DKVQKGQVVCIIEA 237 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCC-CEecCCCEEEEEEe
Confidence 4589999999999 599999 79999999998854
No 146
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=83.37 E-value=1.6 Score=46.84 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=30.2
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
-+|.||..|+|.++++++| |.|+.||+|+.+..
T Consensus 526 ~~v~apm~G~V~~~~V~~G-d~V~~Gq~L~~iEa 558 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAG-DEVKAGQAVLVIEA 558 (596)
T ss_pred CeEecCcceEEEEEEeCCC-CEeCCCCEEEEEEe
Confidence 3699999999999999999 79999999998854
No 147
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=82.95 E-value=3.3 Score=40.10 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=44.0
Q ss_pred EEEEEcCCCCeecCCCeE--EEEE-e-cceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVL--CEVE-T-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l--~~ve-t-~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
+....++.||.|++||+| ..+- . +-...+|.||.+|+|. ..... -.|..|+.|+.+.
T Consensus 230 ~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~-~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 230 LFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRES-PYVEQGDALAKVA 290 (292)
T ss_dssp EEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTS-SECTTTEEEEEEE
T ss_pred EEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcc-cccCCCCeEEEEe
Confidence 558899999999999999 6543 2 2334689999999995 44566 5899999988764
No 148
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=82.94 E-value=3.3 Score=37.02 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=33.2
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCeeeeCCCEEEEE
Q 014404 27 GEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~~v~~g~~l~~~ 71 (425)
||-++..=++ ..|.||++|+|..+ ++++| |.|+.||+|+.+
T Consensus 48 GdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~G-d~Vk~G~~L~~~ 123 (169)
T PRK09439 48 GDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEG-QRVKVGDPIIEF 123 (169)
T ss_pred cceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCC-CEEeCCCEEEEE
Confidence 6777765554 57889999998877 78999 799999999876
No 149
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=81.89 E-value=3 Score=42.82 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=35.0
Q ss_pred eEEEEEec-ceeeEEecCCCeEEEEEE-ecCCCeeeeCCCEEEEEe
Q 014404 29 VLCEVETD-KATVEMECMEEGYLAKIV-KGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 29 ~l~~vet~-K~~~~i~a~~~G~v~~~~-~~~g~~~v~~g~~l~~~~ 72 (425)
..+.|+.+ .-...|.++.+|+|.+++ +.+| +.|+.||+|+.+.
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~G-d~VkkGq~La~l~ 156 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVG-DKVQKGTPLLDLT 156 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCC-CEECCCCEEEEEe
Confidence 34556543 235679999999999998 8999 7999999999984
No 150
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=81.63 E-value=4.4 Score=34.31 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=29.4
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCeeeeCCCEEEEE
Q 014404 27 GEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~~v~~g~~l~~~ 71 (425)
|+-++..=++ ..|.||++|+|..+ ++++| |.|..||+|+.+
T Consensus 26 G~GvaI~P~~---~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~~~vk~G-d~V~~G~~l~~~ 101 (124)
T cd00210 26 GDGFAIKPSD---GKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEG-QRVKQGDKLLEF 101 (124)
T ss_pred cceEEEEccC---CeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeecCCCceEEEecCC-CEEcCCCEEEEE
Confidence 4556644432 46778888877666 68888 789999998876
No 151
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=80.96 E-value=2.3 Score=37.47 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=29.8
Q ss_pred eeEEecCCCeEEEE-------EEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAK-------IVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~-------~~~~~g~~~v~~g~~l~~~~~ 73 (425)
...|.||.-|++.. ++++.| +.|..||+|+.+..
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~G-d~V~~Gq~l~~iEa 119 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVG-DTVKEGQTLCIIEA 119 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCC-CEeCCCCEEEEEEe
Confidence 35799999999987 789999 79999999998754
No 152
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=80.78 E-value=3 Score=35.73 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCeeeeCCCEEEE
Q 014404 26 PGEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAI 70 (425)
Q Consensus 26 ~g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~~v~~g~~l~~ 70 (425)
-|+-++..=++. .|.||++|+|..+ ++++| +.|+.||+|+.
T Consensus 29 lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G-~~V~~G~~L~~ 104 (132)
T PF00358_consen 29 LGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEG-DKVKAGQPLIE 104 (132)
T ss_dssp SSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TT-SEE-TTEEEEE
T ss_pred CcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCC-CEEECCCEEEE
Confidence 356677554443 6889999999888 77889 79999999987
Q ss_pred E
Q 014404 71 T 71 (425)
Q Consensus 71 ~ 71 (425)
+
T Consensus 105 ~ 105 (132)
T PF00358_consen 105 F 105 (132)
T ss_dssp E
T ss_pred E
Confidence 6
No 153
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=80.49 E-value=2.3 Score=45.62 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..|.||..|.|.++++++| |.|+.|++|+.+..
T Consensus 518 ~~v~ap~~G~v~~~~V~~G-d~V~~G~~l~~iEa 550 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEG-QTVAEGEVLLILEA 550 (582)
T ss_pred CeEeCCccEEEEEEEeCCC-CEECCCCEEEEEEe
Confidence 4799999999999999999 79999999998854
No 154
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=80.32 E-value=4.2 Score=37.01 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEE
Q 014404 12 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIA 69 (425)
Q Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~ 69 (425)
.|.. .+++|+.|++||.+.-++-- .++++--|.+ .++.+++| +.|..|+.|.
T Consensus 131 ~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G-~~V~~G~tli 182 (189)
T TIGR00164 131 RIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVG-EKVTAGETVL 182 (189)
T ss_pred EEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCC-CEEEeceEEE
Confidence 4433 45899999999999999865 5666666665 26789999 7999999663
No 155
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=80.06 E-value=6.3 Score=34.61 Aligned_cols=28 Identities=43% Similarity=0.502 Sum_probs=23.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecce
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKA 38 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~ 38 (425)
|+-=+-+|++||.|++||+|+++.-++.
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 5666789999999999999999977543
No 156
>PRK12784 hypothetical protein; Provisional
Probab=79.94 E-value=2.4 Score=32.35 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=33.4
Q ss_pred cceeeE-EecCCCeEEEEEEecCCCeeeeCCCEEEEEeccccc
Q 014404 36 DKATVE-MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 77 (425)
Q Consensus 36 ~K~~~~-i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~ 77 (425)
||+.++ |.||+-|+|.|+++.++ .-|--=++|+.|...+..
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~es-SyVYEWEkL~~I~~~dg~ 42 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNES-SYVYEWEKLMMIRKNNGE 42 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCC-ceEEeeeeeeEEeecCCc
Confidence 344554 89999999999999999 699999999988665543
No 157
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=79.79 E-value=2.3 Score=31.85 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEV 33 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~v 33 (425)
.+|+|++|+++.|+.|..|+.|+.|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4799999999999999999999874
No 158
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=79.66 E-value=5.3 Score=33.65 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.6
Q ss_pred EecCCCeeeeCCCEEEEE
Q 014404 54 VKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 54 ~~~~g~~~v~~g~~l~~~ 71 (425)
++++| +.|+.||+|+.+
T Consensus 85 ~v~~G-d~V~~G~~l~~~ 101 (121)
T TIGR00830 85 HVEEG-QRVKKGDPLLEF 101 (121)
T ss_pred EecCC-CEEcCCCEEEEE
Confidence 78899 799999999876
No 159
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=79.65 E-value=1.7 Score=42.60 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=13.3
Q ss_pred EEEEEecCCCeeeeCCCEEEEEec
Q 014404 50 LAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 50 v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
|.++++++| +.|+.|++|+.+.+
T Consensus 77 v~~i~v~~G-~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 77 VAEILVKEG-DRVKKGQLLARLDP 99 (372)
T ss_pred EEEEEccCC-CeecCCCEEEEECC
Confidence 555666666 46666666665543
No 160
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=78.46 E-value=5 Score=35.28 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=15.5
Q ss_pred EecCCCeeeeCCCEEEEE
Q 014404 54 VKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 54 ~~~~g~~~v~~g~~l~~~ 71 (425)
++++| |.|+.||+|..+
T Consensus 92 ~v~~G-d~Vk~Gd~Li~f 108 (156)
T COG2190 92 LVKEG-DKVKAGDPLLEF 108 (156)
T ss_pred EeeCC-CEEccCCEEEEE
Confidence 88999 799999999876
No 161
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=78.34 E-value=2.6 Score=41.79 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=26.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
..|+|.++++++||.|..||+|+.++.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 57999999999999999999999998754
No 162
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=78.02 E-value=6.2 Score=38.52 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=25.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 579999999999999999999999987
No 163
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=77.60 E-value=2.1 Score=36.21 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEec
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
|+--++++++||+|++||+|+++.-+
T Consensus 79 g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 79 GEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHH
Confidence 55678999999999999999998754
No 164
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=77.33 E-value=2.8 Score=43.03 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=26.4
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEec
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
-.+|+|.++++++||.|..|++|+.|++.
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 36799999999999999999999999754
No 165
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=77.27 E-value=4.7 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
|+--+++|++||+|++||+|+++.-+.
T Consensus 101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 101 GEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 555689999999999999999997643
No 166
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=76.99 E-value=2.2 Score=35.97 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
|+--+++|++||+|++||+|+++.-+.
T Consensus 79 G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 79 GEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 555689999999999999999997543
No 167
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=76.62 E-value=4.8 Score=36.98 Aligned_cols=57 Identities=28% Similarity=0.379 Sum_probs=41.8
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEE
Q 014404 11 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 70 (425)
Q Consensus 11 g~i~~~~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~ 70 (425)
|.|+-+.- ++|+.|++||.+.-++= -.++.+--|.+- +.++.++.| +.|..|+.|++
T Consensus 145 ~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g-~~V~~Ge~i~~ 202 (202)
T PF02666_consen 145 GSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPG-QKVRAGETIGY 202 (202)
T ss_pred ceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCC-CEEEeeeEEeC
Confidence 55555554 69999999999999886 445544444333 337899999 79999999873
No 168
>PRK09294 acyltransferase PapA5; Provisional
Probab=76.42 E-value=88 Score=31.75 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=16.0
Q ss_pred cccHHHHHHHHHHHHHhhC
Q 014404 250 RISVNDLVIKAAALALRKV 268 (425)
Q Consensus 250 klt~~~~likA~~~Al~~~ 268 (425)
++|++.+++-|++.++.+.
T Consensus 229 ~~t~~~~l~Aa~~~~l~r~ 247 (416)
T PRK09294 229 RLTVNALVSAAILLAEWQL 247 (416)
T ss_pred CCcHHHHHHHHHHHHHHHh
Confidence 4899999999998888764
No 169
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=76.33 E-value=3.6 Score=44.27 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
...|.||..|.|.++.+++| +.|+.|++|+.+..
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~G-d~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEG-QTVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCC-CEeCCCCEEEEEec
Confidence 44799999999999999999 79999999998743
No 170
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=75.61 E-value=43 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=25.1
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcCc
Q 014404 390 MSVTLSCDHRVIDGAIGAEWLKAFKGYIENP 420 (425)
Q Consensus 390 m~lslt~DHRviDG~~aa~Fl~~l~~~le~p 420 (425)
..|-+.+||-++||.-...|++.|.+++.+.
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~ 159 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGL 159 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhcc
Confidence 4566889999999999999999999987654
No 171
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=75.49 E-value=4 Score=43.92 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..|.||.+|+|.++.+++| +.|+.||+|+.+..
T Consensus 523 ~~V~Ap~~G~v~~~~V~~G-d~V~~Gq~L~~iea 555 (592)
T PRK09282 523 GAVTSPMPGTVVKVKVKEG-DKVKAGDTVLVLEA 555 (592)
T ss_pred ceEeCCCcEEEEEEEeCCC-CEECCCCEEEEEec
Confidence 5799999999999999999 79999999998743
No 172
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=75.05 E-value=3.8 Score=42.04 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=27.1
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
-.+|+|.++++++||.|..|++|++|+.+.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 467999999999999999999999998654
No 173
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=75.01 E-value=3.9 Score=42.98 Aligned_cols=32 Identities=16% Similarity=0.396 Sum_probs=29.3
Q ss_pred EEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 41 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+.||..|+|..+.+++| +.|..||+|+++..
T Consensus 577 ~l~aPMpG~v~~v~V~~G-~~V~~G~~lvvlEA 608 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEG-QEVSAGDLLVVLEA 608 (645)
T ss_pred ceecCCCceEEEEEecCC-CEecCCCeEEEeEe
Confidence 489999999999999999 79999999998743
No 174
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=74.95 E-value=3.8 Score=41.92 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=26.7
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEec
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
..+|+|.+|++++|+.|..|++|+.|+.+
T Consensus 49 ~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 49 PADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 46899999999999999999999999864
No 175
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=74.85 E-value=7 Score=36.10 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=40.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEE-EE
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI-AI 70 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l-~~ 70 (425)
+.|+. .+++|+.|++||.+.-++-- .++++--|.+ .++.++.| +.|..|+.+ ++
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G-~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVG-QKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCC-CEEEcccEEEEE
Confidence 34444 46899999999999999865 4666666655 27889999 799999854 44
No 176
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=74.21 E-value=2.1 Score=36.64 Aligned_cols=27 Identities=44% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
|+--+++|++||+|++||+|+++.-++
T Consensus 83 G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 83 GEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 445689999999999999999997654
No 177
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=74.05 E-value=4 Score=29.40 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEV 33 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~v 33 (425)
..|++.++++++|+.|..|++|+.+
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4688999999999999999999874
No 178
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=72.90 E-value=5.4 Score=39.97 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=30.4
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+.|.+..+|+|.++.+.++ +.|+.|++|+.|.+
T Consensus 53 vv~Iap~VsG~V~eV~V~dn-q~Vk~Gd~L~~iD~ 86 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDN-QLVKKGDVLFRIDP 86 (352)
T ss_pred EEEEcCcCceEEEEEEecCC-CEecCCCeEEEECc
Confidence 34588999999999999999 79999999999844
No 179
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=71.18 E-value=5.4 Score=41.01 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 7 TMQEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 7 ~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
...+|+|.+|++++||.|..|++|++|+.+.
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 3568999999999999999999999998654
No 180
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=70.62 E-value=5.4 Score=40.82 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=28.7
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeccee
Q 014404 7 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKAT 39 (425)
Q Consensus 7 ~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~ 39 (425)
.-.+|+|.++++++||.|..|++|+.+++.-..
T Consensus 50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~ 82 (404)
T COG0508 50 APDAGVLAKILVEEGDTVPVGAVIARIEEEGAD 82 (404)
T ss_pred CCCCeEEEEEeccCCCEEcCCCeEEEEecCCCc
Confidence 356799999999999999999999999886433
No 181
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=70.39 E-value=5.5 Score=46.52 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
...|.||..|+|.++++++| |.|+.|++|+.+..
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~G-d~V~~Gd~l~~iEs 1165 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVG-DRVEAGQPLVILEA 1165 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCC-CEECCCCEEEEEEe
Confidence 45699999999999999999 79999999998743
No 182
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=68.63 E-value=6.2 Score=42.71 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=22.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
|+--+.+|++||+|++||+|+++.-++
T Consensus 543 g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 543 GEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred CCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 555688999999999999999997654
No 183
>PRK12999 pyruvate carboxylase; Reviewed
Probab=68.59 E-value=9.4 Score=44.44 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..|.||..|+|.++++++| +.|+.||+|+.+..
T Consensus 1077 ~~v~apm~G~v~~i~v~~G-d~V~~G~~L~~lea 1109 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEG-DEVKAGDPLAVIEA 1109 (1146)
T ss_pred ceEeCCceEEEEEEEcCCC-CEECCCCEEEEEEc
Confidence 5699999999999999999 79999999998743
No 184
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=65.10 E-value=8.4 Score=36.66 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.6
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+--|.||.+|++.. .++-| +.|+.||+|+++.+
T Consensus 164 Er~IrAp~~Gi~~~-~~~IG-d~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIG-DSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCC-CEEeCCCEEEEEcC
Confidence 34599999999986 78999 79999999999844
No 185
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=64.48 E-value=6.9 Score=37.68 Aligned_cols=23 Identities=52% Similarity=1.041 Sum_probs=16.1
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
-..|+++.||.|++||+|++++.
T Consensus 65 ~~~~~~~DG~~v~~g~~i~~~~G 87 (280)
T COG0157 65 EIQWLVKDGDRVKPGDVLAEIEG 87 (280)
T ss_pred EEEEEcCCCCEeCCCCEEEEEec
Confidence 34677777777777777777764
No 186
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=63.50 E-value=9.6 Score=39.43 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=27.0
Q ss_pred CceEEEEEEEcCCCCe-ecCCCeEEEEEecc
Q 014404 8 MQEGNIARWLKKEGDK-VSPGEVLCEVETDK 37 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~-V~~g~~l~~vet~K 37 (425)
..+|+|.+|++++|+. |..|++|++|+.+.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 4579999999999999 99999999998654
No 187
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=62.70 E-value=13 Score=46.06 Aligned_cols=20 Identities=25% Similarity=0.430 Sum_probs=18.0
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 014404 15 RWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~ve 34 (425)
.++|+.|+.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999874
No 188
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=61.06 E-value=15 Score=38.36 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=35.5
Q ss_pred EEEecceeeEEecCCCeEEEEE------------------------EecCCCeeeeCCCEEEEEec
Q 014404 32 EVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 32 ~vet~K~~~~i~a~~~G~v~~~------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+...+-..+|.|+.+|+|..| +++.| |.|+.|++|+.+..
T Consensus 406 ~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~G-d~V~~Gd~l~~i~a 470 (493)
T TIGR02645 406 DIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVG-DQVKKGDPLYTIYA 470 (493)
T ss_pred ccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCC-CEecCCCeEEEEEC
Confidence 3445677999999999999987 78999 79999999999874
No 189
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=60.54 E-value=17 Score=39.51 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEec
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
|+-=+++|++||+|++||+|++++-+
T Consensus 559 G~gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 559 GKFFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHH
Confidence 44558899999999999999999764
No 190
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=60.10 E-value=18 Score=34.06 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 014404 9 QEGNIARWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 9 ~eg~i~~~~v~~Gd~V~~g~~l~~ve 34 (425)
..|.|..+.+.+|+.|..|++|+.|-
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 35999999999999999999999874
No 191
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=59.97 E-value=16 Score=35.15 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=40.0
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 12 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.+..|.. +|+.|++||.+.-++-- .++.+--|. |.+ ++.++.| +.|..||.|+.+
T Consensus 211 ~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g-~~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAG-KSVKFGESIGEI 265 (265)
T ss_pred ceeeecc-CCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCC-CEEEcchhhccC
Confidence 4455543 49999999999999874 555555443 334 5778999 799999998753
No 192
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=58.93 E-value=12 Score=39.02 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.8
Q ss_pred CCceEEEEEEEcCCCC-eecCCCeEEEEEecc
Q 014404 7 TMQEGNIARWLKKEGD-KVSPGEVLCEVETDK 37 (425)
Q Consensus 7 ~~~eg~i~~~~v~~Gd-~V~~g~~l~~vet~K 37 (425)
...+|+|.+|++++|+ .|+.|++|++++.+.
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 4568999999999995 799999999998643
No 193
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=58.86 E-value=11 Score=38.80 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=27.8
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 014404 390 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 419 (425)
Q Consensus 390 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 419 (425)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 678899999999999999999999998865
No 194
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=58.33 E-value=12 Score=38.30 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=25.7
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 014404 390 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 419 (425)
Q Consensus 390 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 419 (425)
+-|+++++|.++||.-+..|++.|.+.+..
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg 176 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRG 176 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcC
Confidence 778999999999999999999999998764
No 195
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=58.01 E-value=11 Score=39.03 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=27.9
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 014404 390 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 419 (425)
Q Consensus 390 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 419 (425)
+-|+++++|.++||.-+..|++.|.++...
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 778899999999999999999999998865
No 196
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=57.02 E-value=28 Score=36.57 Aligned_cols=57 Identities=33% Similarity=0.331 Sum_probs=42.0
Q ss_pred cCCCCeecCCCeEEEE-Eecce-eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecccc
Q 014404 18 KKEGDKVSPGEVLCEV-ETDKA-TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 76 (425)
Q Consensus 18 v~~Gd~V~~g~~l~~v-et~K~-~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~ 76 (425)
+++||.|..||+|..| ||.-. -+=++.+..|....+...+| ...+.++|+.+..+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G--~ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEG--EYTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCC--CceeeEEEEEEecCCC
Confidence 4899999999999977 45423 12255666777777888889 4899999998855443
No 197
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.53 E-value=15 Score=35.81 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.8
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
..-|.||.+|.+. ..++.| +.|+.||+|+++.+.
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G-~~V~~Gq~lg~I~dp 264 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAG-DTIPAGQPLGRVVDL 264 (293)
T ss_pred eEEEecCCCeEEE-EecCCC-CEecCCCEEEEEECC
Confidence 5679999999996 668999 799999999999764
No 198
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=56.51 E-value=18 Score=28.49 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=16.5
Q ss_pred EEEEEecCCCeeeeCCCEEEEEec
Q 014404 50 LAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 50 v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+..+.++.| +.|+.|+.|+.+..
T Consensus 52 l~~~~v~~G-~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 52 LDSVSVKVG-DRVKAGQVIGTVGN 74 (96)
T ss_dssp ESEESS-TT-SEE-TTCEEEEEBS
T ss_pred cccccceec-ccccCCCEEEecCC
Confidence 455568899 79999999998753
No 199
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=56.43 E-value=35 Score=34.34 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=39.8
Q ss_pred EcCCCCeecCCCeEEEEE-ecceeeEEec--CCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 17 LKKEGDKVSPGEVLCEVE-TDKATVEMEC--MEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 17 ~v~~Gd~V~~g~~l~~ve-t~K~~~~i~a--~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+++||.|..||.+.+|. +.-.+.-|-. -..|+|..+ ..+| ...+.+.++.+..
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g--~~~~~~~~~~~~~ 110 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAG--DYTVDDVILEVEF 110 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCC--CeeEEEEEEEEEe
Confidence 469999999999999874 4435555544 459999865 4678 3778888887754
No 200
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.10 E-value=14 Score=36.19 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.4
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
..-|.||.+|.+. ..++.| +.|+.||+|+.+.+.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G-~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLG-DIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCC-CEECCCCEEEEEeCC
Confidence 5679999999997 557999 799999999999773
No 201
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=55.92 E-value=13 Score=38.23 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=28.1
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 014404 390 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 419 (425)
Q Consensus 390 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 419 (425)
+-|+++++|.++||.-+..|++.|.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999998865
No 202
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=54.59 E-value=15 Score=37.55 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=27.0
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
-.+|+|.++++++|+.|..|++|+.++.+.
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 357999999999999999999999998655
No 203
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=54.56 E-value=11 Score=39.30 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=28.3
Q ss_pred EecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 42 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+.||..|+|.+++++.| +.|..||.|+.+..
T Consensus 604 ~~aPMpG~Iekv~Vkpg-d~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPG-DKVKEGQELVVLIA 634 (670)
T ss_pred eecCCCCeeeeeeccch-hhhcccCceEEEEe
Confidence 78999999999999999 79999999987643
No 204
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=54.28 E-value=17 Score=39.54 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecce
Q 014404 11 GNIARWLKKEGDKVSPGEVLCEVETDKA 38 (425)
Q Consensus 11 g~i~~~~v~~Gd~V~~g~~l~~vet~K~ 38 (425)
|+--+.+|++||+|++||+|+++.-++.
T Consensus 579 G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 579 GKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 4556788999999999999999977543
No 205
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.24 E-value=14 Score=35.73 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=14.2
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 014404 14 ARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~vet 35 (425)
++|++++|+.|++||+|++++.
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 4666666666666666666653
No 206
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=54.08 E-value=16 Score=35.29 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=13.2
Q ss_pred EEEecCCCeeeeCCCEEEEEecc
Q 014404 52 KIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 52 ~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
++++++| +.++.|++|+.+...
T Consensus 61 ~~~~~dG-~~v~~g~~i~~i~G~ 82 (268)
T cd01572 61 EWLVKDG-DRVEPGQVLATVEGP 82 (268)
T ss_pred EEEeCCC-CEecCCCEEEEEEEC
Confidence 4555666 566666666665443
No 207
>PRK04350 thymidine phosphorylase; Provisional
Probab=54.05 E-value=24 Score=36.99 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=35.1
Q ss_pred EEecceeeEEecCCCeEEEEE------------------------EecCCCeeeeCCCEEEEEec
Q 014404 33 VETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
+-.-+-..+|.|+.+|+|..| +++.| +.|..|++|+++..
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~G-d~V~~G~~l~~i~a 462 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVG-DKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCC-CEecCCCeEEEEec
Confidence 455678899999999999988 78999 79999999999874
No 208
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.89 E-value=18 Score=35.19 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=30.3
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 37 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 37 K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
+...-|.||.+|.+. ..++.| +.|+.||+|+.+.+.
T Consensus 217 ~~~~~v~A~~~G~~~-~~~~~G-d~V~~G~~ig~i~d~ 252 (287)
T cd06251 217 RSSVWVRAPQGGLLR-SLVKLG-DKVKKGQLLATITDP 252 (287)
T ss_pred cCCeEEecCCCeEEE-EecCCC-CEECCCCEEEEEECC
Confidence 333679999999997 578999 799999999998764
No 209
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.41 E-value=18 Score=35.09 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=29.7
Q ss_pred eeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 38 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 38 ~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
...-+.||.+|.+. ..++.| +.|+.||+|+.+.+.
T Consensus 222 ~~~~v~Ap~~G~~~-~~~~~G-~~V~~G~~lg~i~dp 256 (288)
T cd06254 222 DVYYVTSPASGLWY-PFVKAG-DTVQKGALLGYVTDY 256 (288)
T ss_pred CCEEEecCCCeEEE-EecCCC-CEecCCCEEEEEECC
Confidence 45678999999996 667899 799999999998764
No 210
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=53.19 E-value=24 Score=37.03 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEecceeeEEecCCCeEEEEE------------------------EecCCCeeeeCCCEEEEEec
Q 014404 33 VETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
+-..+-..+|.||.+|+|..| +.+.| |.|..|++|+.+..
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~G-d~V~~G~pl~~i~a 471 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVG-EKVKKGDPLYTIYA 471 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCc-CEeCCCCeEEEEEC
Confidence 445677899999999999988 78999 79999999999874
No 211
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=53.09 E-value=23 Score=36.50 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=33.5
Q ss_pred ecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeeCCCEEEEEec
Q 014404 35 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 35 t~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
..+-..+|.|+.+|+|.++ +.+.| |.|+.|++|+++..
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~G-d~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLG-DRVEKGEPLAVVHA 403 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCc-CEeCCCCeEEEEEC
Confidence 4577889999999999988 78899 79999999999874
No 212
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.39 E-value=16 Score=35.44 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=14.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
-++|+++.|+.|++||+|++++.
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 34666666666666666666653
No 213
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=52.28 E-value=25 Score=35.97 Aligned_cols=40 Identities=25% Similarity=0.436 Sum_probs=34.6
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeeCCCEEEEEec
Q 014404 33 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
+-..+-..+|.|+.+|+|..+ +.+.| +.|..|++|+++..
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G-~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTG-DRVKKGDPLATLYS 397 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCc-CEeCCCCeEEEEeC
Confidence 445778899999999999987 78899 79999999999874
No 214
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=52.17 E-value=13 Score=29.34 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEec
Q 014404 12 NIARWLKKEGDKVSPGEVLCEVETD 36 (425)
Q Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~vet~ 36 (425)
-+....|++||.|++||.|+.+...
T Consensus 51 ~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 51 HLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EESEESS-TTSEE-TTCEEEEEBSC
T ss_pred ccccccceecccccCCCEEEecCCC
Confidence 3445669999999999999998754
No 215
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=51.48 E-value=35 Score=36.54 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=41.6
Q ss_pred EcCCCCeecCCCeEEEE-EecceeeEEe--cCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 17 LKKEGDKVSPGEVLCEV-ETDKATVEME--CMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 17 ~v~~Gd~V~~g~~l~~v-et~K~~~~i~--a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
.+++||.|..||++.+| ||.-...-|- .-..|+|..+ ..+| ...+.++|+.+..
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g--~ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAG--NYTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCC--CceeeeEEEEEee
Confidence 58889999999999976 5555555544 4457999876 5788 4889999998864
No 216
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=51.29 E-value=20 Score=36.07 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.0
Q ss_pred eEEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccc
Q 014404 40 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
.-|.||.+|.+. ..++.| +.|+.||+|+.+.+.-
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~G-d~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPG-DWVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEEE-EecCCC-CEecCCCEEEEEECCC
Confidence 358999999996 667999 7999999999997643
No 217
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=51.21 E-value=20 Score=34.42 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEE
Q 014404 19 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 70 (425)
Q Consensus 19 ~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~ 70 (425)
.+|+.|++||.+.-++-- .++.+--|.+-+--...+++| +.|..|+.|+.
T Consensus 208 ~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g-~~V~~Ge~ig~ 257 (259)
T PRK03140 208 HERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSG-QEVRLGEKIGT 257 (259)
T ss_pred cCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCC-CEEEcChhhcc
Confidence 467888888888777766 555554443322223455677 57777777754
No 218
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=51.04 E-value=28 Score=37.86 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCeeeeCCCEEEEE
Q 014404 27 GEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~~v~~g~~l~~~ 71 (425)
||-++..=++ -.|.||++|+|..+ ++++| |.|+.||+|+.+
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~G-d~V~~G~~l~~~ 601 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEG-AQVSAGQPILEM 601 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCC-CEEcCCCEEEEE
Confidence 5555554443 47899999999876 68899 799999999876
No 219
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=50.97 E-value=17 Score=35.29 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=11.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 014404 14 ARWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~ve 34 (425)
++|+++.|+.|++||+|++++
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 355555555555555555444
No 220
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=50.91 E-value=21 Score=35.47 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.0
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
..-|.||.+|.+. ..++.| +.|+.||+|+.+.+
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G-~~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLG-DPVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEEE-EecCCC-CEeCCCCEEEEEEC
Confidence 3459999999997 668999 79999999999987
No 221
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=50.84 E-value=13 Score=38.44 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=17.6
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEE
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~ve 34 (425)
+..+-=++|+++.||.|++||+|++|=
T Consensus 377 id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 377 IDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 334444567777777777777777665
No 222
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=50.78 E-value=13 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=28.0
Q ss_pred EecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 42 MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
|-||..|+|.++.++.| +.|+.|++|+.+.
T Consensus 1082 igApmpG~Vv~v~V~~G-~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKG-DKVKKGDVLAVIE 1111 (1149)
T ss_pred cCCCCCCceEEEEEccC-CeecCCCeeeehh
Confidence 88999999999999999 7999999999873
No 223
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=50.58 E-value=18 Score=37.47 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=27.7
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 014404 390 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 419 (425)
Q Consensus 390 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 419 (425)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 778899999999999999999999998764
No 224
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=50.55 E-value=17 Score=38.54 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=25.7
Q ss_pred CCceEEEEEEEcCCCC-eecCCCeEEEEEec
Q 014404 7 TMQEGNIARWLKKEGD-KVSPGEVLCEVETD 36 (425)
Q Consensus 7 ~~~eg~i~~~~v~~Gd-~V~~g~~l~~vet~ 36 (425)
...+|+|.++++++|+ .|..|++|+.+..+
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 4568999999999996 79999999988543
No 225
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=50.46 E-value=18 Score=35.38 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=13.6
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 014404 14 ARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~vet 35 (425)
++|+++.|+.|++||+|++++.
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 4566666666666666666653
No 226
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=50.46 E-value=14 Score=39.86 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=28.1
Q ss_pred EecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 42 MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
|-||..|+|.+|.+++| +.|+.||+|+++.
T Consensus 1109 igAPMpG~vieikvk~G-~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKVKEG-AKVKKGQPLAVLS 1138 (1176)
T ss_pred ccCCCCCceEEEEEecC-ceecCCCceEeee
Confidence 88999999999999999 7999999999874
No 227
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.26 E-value=18 Score=35.03 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=15.0
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 014404 14 ARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~vet 35 (425)
++|+++.|+.|++||+|++++.
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 5677777777777776666654
No 228
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=49.78 E-value=27 Score=36.08 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=34.6
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeeCCCEEEEEec
Q 014404 33 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
+-..+-..+|.|+.+|+|..+ +.+.| |.|..|++|+++..
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g-~~V~~g~~l~~i~~ 399 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVG-DSVKKGESLATIYA 399 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCc-CEeCCCCeEEEEeC
Confidence 345677899999999999988 78899 79999999999874
No 229
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=49.61 E-value=18 Score=37.68 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=29.3
Q ss_pred EEEEEEEecccccchHHHHHHHHHHHHHhcCcc
Q 014404 389 FMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPE 421 (425)
Q Consensus 389 ~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~ 421 (425)
..-|.+.+||-+.||.-+..|.+.|-+.|+.+.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 467789999999999999999999999997643
No 230
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=49.59 E-value=29 Score=35.94 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=33.6
Q ss_pred ecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeeCCCEEEEEec
Q 014404 35 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 35 t~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
..+-..+|.|+.+|+|..| +++.| +.|..|++|+.+..
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G-~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLG-DRVDAGEPLATLHA 404 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCc-CEECCCCeEEEEeC
Confidence 4677899999999999887 78899 79999999999874
No 231
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=49.55 E-value=19 Score=34.82 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=11.2
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 014404 14 ARWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~ve 34 (425)
++|++++|+.|++||+|++++
T Consensus 58 v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 58 VDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 345555555555555555554
No 232
>PRK04350 thymidine phosphorylase; Provisional
Probab=48.97 E-value=16 Score=38.18 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=25.3
Q ss_pred CCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 014404 5 SPTMQEGNIARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 5 ~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
|--+..+-=+.++++.||.|++||+|++|=+
T Consensus 432 Gap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 432 GAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred CCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 4445556668899999999999999999864
No 233
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.96 E-value=19 Score=35.03 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=14.4
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 014404 14 ARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~vet 35 (425)
.+|+++.|+.|++||+|++++.
T Consensus 74 ~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 74 FTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 3566677777777776666653
No 234
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.67 E-value=20 Score=34.97 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=13.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
-++|+++.|+.|++||+|++++.
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 34566666666666666665553
No 235
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.66 E-value=20 Score=35.01 Aligned_cols=23 Identities=30% Similarity=0.758 Sum_probs=15.2
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
-++|+++.|+.|++|++|++++.
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEe
Confidence 35677777777777777666653
No 236
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=48.66 E-value=15 Score=37.82 Aligned_cols=28 Identities=29% Similarity=0.225 Sum_probs=23.5
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEe
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
+.-+-=+.|+++.||.|++||+|++|=+
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 4455567899999999999999998863
No 237
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=48.63 E-value=28 Score=35.45 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=35.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEE-------EecCCCeeeeCCCEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI-------VKGDGSKEIKVGEVIA 69 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~-------~~~~g~~~v~~g~~l~ 69 (425)
+|+-..+.|.+-... +...+..--+|.|..+|+|.++ .+++| |.|+.||+|.
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~G-d~VkkGdvLI 225 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVG-DTVKKGDVLI 225 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCC-CEECCCCEEE
Confidence 456666666554432 2333444567899999999998 45677 6888899885
No 238
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.26 E-value=20 Score=34.61 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=10.9
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 014404 14 ARWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 14 ~~~~v~~Gd~V~~g~~l~~ve 34 (425)
++|++++|+.|++||+|++++
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 345555555555555555544
No 239
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=48.17 E-value=35 Score=33.67 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.5
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 37 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 37 K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
+...-|.||.+|.+. ..++.| +.|+.||+|+.+.+.
T Consensus 242 ~~~~~v~A~~~G~~~-~~~~~G-~~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLFE-PLVDLG-DEVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEEE-EecCCC-CEEcCCCEEEEEECC
Confidence 344679999999996 668999 799999999999774
No 240
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.67 E-value=21 Score=34.43 Aligned_cols=23 Identities=52% Similarity=0.895 Sum_probs=14.1
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
-++|++++|+.|++|++|++++.
T Consensus 58 ~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 58 EVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred EEEEEeCCCCEecCCCEEEEEEE
Confidence 34566666666666666666654
No 241
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=47.59 E-value=33 Score=37.24 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCeeeeCCCEEEEE
Q 014404 27 GEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~~v~~g~~l~~~ 71 (425)
||-++..=++ -.|.||++|+|..+ ++++| |.|+.||+|+.+
T Consensus 506 G~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~G-d~V~~G~~l~~~ 581 (627)
T PRK09824 506 GKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVG-DKVNTGDLLIEF 581 (627)
T ss_pred CCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCC-CEEcCCCEEEEE
Confidence 4455543332 47999999999876 78899 799999999876
No 242
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=47.50 E-value=17 Score=38.07 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=25.2
Q ss_pred CCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 014404 5 SPTMQEGNIARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 5 ~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
|-.+.-+-=+.++++.||.|++||+|++|=+
T Consensus 441 GA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 441 GAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred CCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 4445556667899999999999999999864
No 243
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=47.42 E-value=21 Score=35.03 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=15.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
-++|+++.|+.|++|++|++++.
T Consensus 79 ~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 79 KVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred EEEEEeCCCCEecCCCEEEEEEE
Confidence 34577777777777777776654
No 244
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=47.21 E-value=16 Score=37.73 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.1
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 37 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet~K 37 (425)
+.-+.=+.++++.||.|++||+|++|=+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 455666899999999999999999987554
No 245
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=46.77 E-value=37 Score=36.82 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=31.4
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCeeeeCCCEEEEE
Q 014404 27 GEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~~v~~g~~l~~~ 71 (425)
||-++..=++ -.|.||++|+|..+ ++++| |.|+.||+|+.+
T Consensus 490 G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g-~~V~~G~~l~~~ 565 (610)
T TIGR01995 490 GKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVG-DHVKAGQLLLTF 565 (610)
T ss_pred CCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCc-CEEcCCCEEEEe
Confidence 5555544332 46899999988876 78999 799999999876
No 246
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.83 E-value=24 Score=34.32 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=13.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 014404 13 IARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 13 i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
-++|+++.|+.|++||+|++++.
T Consensus 71 ~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 71 EMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEE
Confidence 35666666666666666666553
No 247
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=45.55 E-value=3.6e+02 Score=27.72 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=42.1
Q ss_pred CcccHHHHHHHHHHHHHhh----CCCCCceecCCceeeeCccceEEEeec------C-------CCeEEEEEecCCCCCH
Q 014404 249 KRISVNDLVIKAAALALRK----VPRCNSSWADEYIRQFKNVNINVAVQT------E-------NGLYVPVIRDADKKGL 311 (425)
Q Consensus 249 ~klt~~~~likA~~~Al~~----~P~ln~~~~~~~i~~~~~i~i~~av~~------~-------~gl~~pvi~~~~~~sl 311 (425)
.+.|++++++.|+.+--.. ++..| +.+.++++|+. . .+....+|+..+..||
T Consensus 237 ~gaTiNDiilaa~~~fr~~y~~~~~k~~-----------~~lsi~~~VDlRkyl~sk~~sI~Nls~~~~i~I~~dd~~~f 305 (439)
T COG4908 237 HGATINDIILAALLKFRLLYNTTHEKAN-----------NYLSIDMPVDLRKYLPSKEESISNLSSYLTIVINVDDVTDF 305 (439)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhhchhhc-----------CeeeeceeeehhhhccccccceeccceeEEEEEeccccccH
Confidence 3589999999998443322 33333 44556666641 1 2456778999888888
Q ss_pred HHHHHHHHHHHH
Q 014404 312 STIAEEVRQLAQ 323 (425)
Q Consensus 312 ~ei~~~~~~l~~ 323 (425)
....+.++....
T Consensus 306 e~t~~~vk~~~~ 317 (439)
T COG4908 306 EKTLEKVKGIMN 317 (439)
T ss_pred HHHHHHHHhhcC
Confidence 888887776655
No 248
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=45.44 E-value=40 Score=27.39 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=34.9
Q ss_pred CCCeecCCCeEEEEEecc-eeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 20 EGDKVSPGEVLCEVETDK-ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 20 ~Gd~V~~g~~l~~vet~K-~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
......++.+|..+..-+ +.+.+ ....|.-.+..|+.| |.|..||.|+..
T Consensus 11 ~~K~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~G-d~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 11 EHKELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVG-DKVKKGQLIAEA 61 (101)
T ss_pred CccccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCC-CEEcCCCEEEec
Confidence 344566777777666433 33333 445677778999999 799999999964
No 249
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.33 E-value=24 Score=34.20 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=9.3
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 014404 15 RWLKKEGDKVSPGEVLCEVE 34 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~ve 34 (425)
+|+++.|+.|++|++|++++
T Consensus 61 ~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 61 EVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred EEEcCCCCEecCCCEEEEEE
Confidence 44444444444444444443
No 250
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=45.19 E-value=24 Score=34.17 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=8.7
Q ss_pred EecCCCeeeeCCCEEEEEe
Q 014404 54 VKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 54 ~~~~g~~~v~~g~~l~~~~ 72 (425)
++++| +.|+.|++|+.+.
T Consensus 65 ~~~dG-~~v~~g~~i~~~~ 82 (277)
T TIGR01334 65 AVPSG-SRALAGTLLLEAK 82 (277)
T ss_pred EeCCC-CEeCCCCEEEEEE
Confidence 34455 4555555555443
No 251
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=44.90 E-value=23 Score=33.42 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEE
Q 014404 21 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 70 (425)
Q Consensus 21 Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~ 70 (425)
|+.|++||.+.-++- -.++.+--|.+-+--+..+++| +.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g-~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVG-QEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccC-CEEEcChhhcc
Confidence 999999999998886 4566655554322225778899 79999999864
No 252
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=44.07 E-value=29 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=20.9
Q ss_pred CCCeEEEEEEecCCCeeeeCCCEEEEEecccc
Q 014404 45 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 76 (425)
Q Consensus 45 ~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~ 76 (425)
+..|+. ++.+.| |.|..|++|+.+....+
T Consensus 30 ~~vGi~--l~~k~G-d~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGIE--LHKKVG-DRVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EEE--ESS-TT-SEEBTTSEEEEEEESSS
T ss_pred cCcCeE--ecCcCc-CEECCCCeEEEEEcCCh
Confidence 345654 678899 79999999999876543
No 253
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.00 E-value=29 Score=32.08 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=50.7
Q ss_pred CCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEec--------------ceeeE-EecCCCeEEEEEEecCCCeeeeCCC
Q 014404 2 PSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD--------------KATVE-MECMEEGYLAKIVKGDGSKEIKVGE 66 (425)
Q Consensus 2 P~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet~--------------K~~~~-i~a~~~G~v~~~~~~~g~~~v~~g~ 66 (425)
+.+||+++--=|.+-.+..||.+.-|++|.||.-- +.... -.+-.+|...+++ ++| .|.+|+
T Consensus 79 g~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL-~~G--~v~~gD 155 (210)
T COG2258 79 GAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL-EEG--KVRAGD 155 (210)
T ss_pred ccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc-ccc--eecCCC
Confidence 35788887777888899999999999999999541 11111 2344568988776 677 699999
Q ss_pred EEEEEe
Q 014404 67 VIAITV 72 (425)
Q Consensus 67 ~l~~~~ 72 (425)
+|-.+.
T Consensus 156 ~l~l~~ 161 (210)
T COG2258 156 PLKLIP 161 (210)
T ss_pred ceEEec
Confidence 998763
No 254
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=42.66 E-value=28 Score=33.47 Aligned_cols=21 Identities=62% Similarity=1.164 Sum_probs=12.5
Q ss_pred EEEcCCCCeecCCCeEEEEEe
Q 014404 15 RWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~vet 35 (425)
+|+++.|+.|++||+|++++.
T Consensus 57 ~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 57 EWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEeCCCCEecCCCEEEEEEE
Confidence 566666666666666665553
No 255
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=42.62 E-value=23 Score=33.17 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCCCCCceEEEEEEEcCCCCeecCCCeEEEEEe-----ccee----------eEEecCCCeEEEEEEecCCCeeeeCCCE
Q 014404 3 SLSPTMQEGNIARWLKKEGDKVSPGEVLCEVET-----DKAT----------VEMECMEEGYLAKIVKGDGSKEIKVGEV 67 (425)
Q Consensus 3 ~~~~~~~eg~i~~~~v~~Gd~V~~g~~l~~vet-----~K~~----------~~i~a~~~G~v~~~~~~~g~~~v~~g~~ 67 (425)
.+||+++---+.+-.|..||.++-|+.+++|.- -|.. .-......|...+++ ++| .|.+|+.
T Consensus 83 ~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL-~~G--~V~~GD~ 159 (223)
T PRK11536 83 AFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI-APG--KVSADAP 159 (223)
T ss_pred CccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE-CCc--EEcCCCE
Confidence 567877666677788999999999999998854 1211 113355679998885 788 6999999
Q ss_pred EEEEe
Q 014404 68 IAITV 72 (425)
Q Consensus 68 l~~~~ 72 (425)
|-.+.
T Consensus 160 v~l~~ 164 (223)
T PRK11536 160 LELVS 164 (223)
T ss_pred EEEEe
Confidence 98764
No 256
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=42.52 E-value=21 Score=34.13 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=27.4
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 39 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
.--+...+-|..-++.+++| |.|+.||+|++-
T Consensus 29 ~al~~~Df~g~~Pkm~VkeG-D~Vk~Gq~LF~d 60 (257)
T PF05896_consen 29 VALLPDDFPGMKPKMLVKEG-DRVKAGQPLFED 60 (257)
T ss_pred EEEcCcccCCCCccEEeccC-CEEeCCCeeEee
Confidence 33466889999999999999 799999999863
No 257
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=41.20 E-value=10 Score=32.17 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.2
Q ss_pred ChhHHhHHHHcCCCCCccc
Q 014404 136 SPVARNLAEEHNVSLSSIK 154 (425)
Q Consensus 136 sP~aR~lA~e~gIdl~~v~ 154 (425)
-|++|.||.++|||+..|.
T Consensus 35 LPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 35 LPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCcHHHHHHHhCCCHHHHH
Confidence 6999999999999988774
No 258
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=40.59 E-value=16 Score=34.18 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=25.6
Q ss_pred EEEcCCCCeecCCCeEEEEEecceeeE
Q 014404 15 RWLKKEGDKVSPGEVLCEVETDKATVE 41 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~vet~K~~~~ 41 (425)
.|+|.+|.-+++=|..|.||.||+.++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 599999999999999999999999886
No 259
>COG3608 Predicted deacylase [General function prediction only]
Probab=40.40 E-value=51 Score=32.70 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=33.7
Q ss_pred CeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEecc
Q 014404 28 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 74 (425)
Q Consensus 28 ~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~ 74 (425)
......+++ .--|.||..|.|. .+++.| |.|..|++|+++.+.
T Consensus 247 ~~~~~~~~~--~~~i~Ap~~G~v~-~~v~lG-d~VeaG~~la~i~~~ 289 (331)
T COG3608 247 TKGLALPSS--DEMIRAPAGGLVE-FLVDLG-DKVEAGDVLATIHDP 289 (331)
T ss_pred cceeecccc--cceeecCCCceEE-EeecCC-CcccCCCeEEEEecC
Confidence 444455555 4458999999995 789999 799999999998764
No 260
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=39.43 E-value=62 Score=37.28 Aligned_cols=53 Identities=38% Similarity=0.458 Sum_probs=40.9
Q ss_pred cCCCCeecCCCeEEEE-EecceeeEE--ecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 18 KKEGDKVSPGEVLCEV-ETDKATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 18 v~~Gd~V~~g~~l~~v-et~K~~~~i--~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+++||+|.-||.+.+| ||.=...-| +....|+|+.| +.+| ...+-++++.+..
T Consensus 124 ~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g--~~~~~~~~~~~~~ 179 (1017)
T PRK14698 124 VKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEG--EYTIEEVIAKVKT 179 (1017)
T ss_pred eecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCC--CcceeeEEEEEEc
Confidence 6889999999999987 454445444 44458999866 5788 4889999998865
No 261
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=39.37 E-value=35 Score=40.30 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=31.3
Q ss_pred EEEcCCCCeecCCCeEEEEEe--------cceeeEEecCCCeEEE
Q 014404 15 RWLKKEGDKVSPGEVLCEVET--------DKATVEMECMEEGYLA 51 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~vet--------~K~~~~i~a~~~G~v~ 51 (425)
.++|+.|+.|++||+|+++.. +|+...|-|..+|.|.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 478999999999999999974 5566789999999853
No 262
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=39.14 E-value=46 Score=32.04 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=27.3
Q ss_pred cCCCCeecC-CCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEE
Q 014404 18 KKEGDKVSP-GEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 70 (425)
Q Consensus 18 v~~Gd~V~~-g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~ 70 (425)
+..|+.|.+ |++|++. . .-+|.+|++|.+. + -.. ..+.+|+..++
T Consensus 226 ~~~~~~~~~~G~~la~~-~---~~~~~ap~~g~vl--~-~p~-~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHD-G---GEPIRTPYDDCVL--I-MPS-LRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEe-C---CeEEeCCCCCEEE--E-ccC-CCCCCCceeee
Confidence 345677777 7777773 2 2677777777663 1 233 34557776553
No 263
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.86 E-value=69 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=30.6
Q ss_pred ecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 24 VSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 24 V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+++||.|..+ |..|++....+..| +.+..|++++-+..
T Consensus 87 lkkGd~ll~i-----------PvEGYvVtpIaDvG-~RvrkGd~~AAvtt 124 (161)
T COG4072 87 LKKGDELLLI-----------PVEGYVVTPIADVG-NRVRKGDPFAAVTT 124 (161)
T ss_pred ecCCCEEEEE-----------ecCcEEEEEeeccc-chhcCCCceeEEEe
Confidence 4566666544 78899999999999 79999999987654
No 264
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=38.60 E-value=18 Score=35.71 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=14.1
Q ss_pred EEEcCCCCeecCCCeEEEEEe
Q 014404 15 RWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~vet 35 (425)
+++|++||.|++||.|+++-.
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred ccccCCcCEECCCCeEEeEcC
Confidence 445777777777777776643
No 265
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=38.11 E-value=65 Score=32.73 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=33.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEecCCCeEEEEEE-------ecCCCeeeeCCCEEE
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV-------KGDGSKEIKVGEVIA 69 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~-------~~~g~~~v~~g~~l~ 69 (425)
+|+-..+.|.+..... +.+.+..--+|.|..+|+|.+++ +++| |.|+.||+|.
T Consensus 163 ~GTrl~i~v~Ek~~~p------~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~G-D~VkkGqvLI 222 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPK------PVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKG-DVVKKGDLLI 222 (382)
T ss_pred EeEEEEEEEEecCCCC------CccccCCCccEEECCCCEEEEEEEcCCeEEEccC-CEEcCCCEEE
Confidence 4555556665554311 11122233578899999999985 5666 6888888875
No 266
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=38.05 E-value=38 Score=33.03 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=39.2
Q ss_pred EEEEEEcC----CCCeecCCCeEEEEEecceeeEEecCCCeEEE-EEEecCCCeeeeCCCEEEEEe
Q 014404 12 NIARWLKK----EGDKVSPGEVLCEVETDKATVEMECMEEGYLA-KIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 12 ~i~~~~v~----~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~-~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.+..|... .|..|++||.+.-.+=- .++.+--|.+ .+. ...+.+| +.|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g-~kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAG-SVVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCC-CEEEcChhhcCcc
Confidence 45555543 27799999999988764 5555554443 331 2346789 7999999998653
No 267
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=37.96 E-value=61 Score=33.14 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=33.9
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeeCCCEEEEEec
Q 014404 33 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~~v~~g~~l~~~~~ 73 (425)
+..-|-..+|.|..+|+|..+ +.+.| +.|++|++|+.+..
T Consensus 330 l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~g-e~Vk~Gd~l~tiya 400 (435)
T COG0213 330 LPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLG-EKVKKGDPLATIYA 400 (435)
T ss_pred cccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCC-CeeccCCeEEEEec
Confidence 445677889999999999887 77889 79999999999876
No 268
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=37.20 E-value=40 Score=34.28 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=18.9
Q ss_pred ceEEEEEE-------EcCCCCeecCCCeEE
Q 014404 9 QEGNIARW-------LKKEGDKVSPGEVLC 31 (425)
Q Consensus 9 ~eg~i~~~-------~v~~Gd~V~~g~~l~ 31 (425)
.+|.|+++ .|++||.|++||+|.
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLI 225 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLI 225 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEE
Confidence 45777776 478999999999997
No 269
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=36.28 E-value=48 Score=39.19 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=40.7
Q ss_pred CCeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEE
Q 014404 21 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 71 (425)
Q Consensus 21 Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~ 71 (425)
|-.+..|--.|..|-+-=-..+.||..|++.+.+++.| +.|.+||+-+.+
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG-~hv~~Gq~YAei 716 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDG-EHVEAGQPYAEI 716 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCC-CceecCCeeeeh
Confidence 44566677777777666566689999999999999999 799999998765
No 270
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.28 E-value=47 Score=32.39 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=12.3
Q ss_pred EEEEc--CCCCeecCCCeEEEEEe
Q 014404 14 ARWLK--KEGDKVSPGEVLCEVET 35 (425)
Q Consensus 14 ~~~~v--~~Gd~V~~g~~l~~vet 35 (425)
.+|++ +.|+.|++||+|++++.
T Consensus 73 ~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 73 FQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred EEEeecCCCCCEecCCCEEEEEEE
Confidence 34555 56666666665555553
No 271
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=32.50 E-value=39 Score=34.46 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.1
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEe
Q 014404 8 MQEGNIARWLKKEGDKVSPGEVLCEVET 35 (425)
Q Consensus 8 ~~eg~i~~~~v~~Gd~V~~g~~l~~vet 35 (425)
|.-+.=+..+++.||.|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5556667899999999999999998866
No 272
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=32.13 E-value=1e+02 Score=33.20 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=41.5
Q ss_pred EcCCCCeecCCCeEEEEEec-ceeeE--EecCCCeEEEEEEecCCCeeeeCCCEEEEEeccc
Q 014404 17 LKKEGDKVSPGEVLCEVETD-KATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 17 ~v~~Gd~V~~g~~l~~vet~-K~~~~--i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
.+++||.|..||.+.+|.-. -...- ++.-..|++..| +.+| ...+.++|+.+.+.+
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G--~ytv~~~i~~~~~~~ 181 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEG--DYTVDDTIAVLEDED 181 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCC--CceeeeEEEEEEccC
Confidence 47899999999999987543 23333 455568999766 5788 488999999886543
No 273
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=31.97 E-value=48 Score=33.15 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=6.0
Q ss_pred cChhHHhHHH
Q 014404 135 ASPVARNLAE 144 (425)
Q Consensus 135 asP~aR~lA~ 144 (425)
..|-.|.+++
T Consensus 138 t~Pg~r~l~k 147 (343)
T PRK08662 138 VHPAIAPMMD 147 (343)
T ss_pred CCHhHHHHHH
Confidence 3566666655
No 274
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=31.55 E-value=1e+02 Score=23.97 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=25.3
Q ss_pred ceeeEEecCCCeEE----------------EEEEecCCCeeeeCCCEEEEEec
Q 014404 37 KATVEMECMEEGYL----------------AKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 37 K~~~~i~a~~~G~v----------------~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+....+.+..+|++ .++++++| +.+..|++|+.+..
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l~~~v~~~~~dG-~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKLGLEVEWLVKDG-DRVEPGDVILEIEG 68 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHCTEEEEESS-TT--EEETTCEEEEEEE
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhccEEEEEEeCCC-CCccCCcEEEEEEe
Confidence 44556666666665 45788999 79999999998754
No 275
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=31.07 E-value=45 Score=34.43 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=26.6
Q ss_pred CCeEEEEEEecCCCeeeeCCCEEEEEeccccc
Q 014404 46 EEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 77 (425)
Q Consensus 46 ~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~ 77 (425)
..|.|.+|.-++| |.+..|++|+.|+.+.+.
T Consensus 51 eeGnIvsW~kKeG-dkls~GDvl~EVETDKAt 81 (470)
T KOG0557|consen 51 EEGNIVSWKKKEG-DKLSAGDVLLEVETDKAT 81 (470)
T ss_pred cCCceeeEeeccC-CccCCCceEEEEecccce
Confidence 5799999999999 799999999998665443
No 276
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=30.95 E-value=1.1e+02 Score=33.00 Aligned_cols=53 Identities=32% Similarity=0.451 Sum_probs=40.8
Q ss_pred cCCCCeecCCCeEEEE-EecceeeEE--ecCCCeEEEEEEecCCCeeeeCCCEEEEEec
Q 014404 18 KKEGDKVSPGEVLCEV-ETDKATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 73 (425)
Q Consensus 18 v~~Gd~V~~g~~l~~v-et~K~~~~i--~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~ 73 (425)
+++||.|..||++++| |+.-.+..| +.-..|+|..+ ..+| ...+.++++.+..
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g--~~~~~~~v~~~~~ 176 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEG--DYTVEDTIAVVDT 176 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCC--CceeeeeEEEEec
Confidence 7899999999999988 555554443 44469999876 5788 4889999988754
No 277
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=29.13 E-value=73 Score=32.37 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=19.3
Q ss_pred ceEEEEEE-------EcCCCCeecCCCeEEE
Q 014404 9 QEGNIARW-------LKKEGDKVSPGEVLCE 32 (425)
Q Consensus 9 ~eg~i~~~-------~v~~Gd~V~~g~~l~~ 32 (425)
.+|.|+++ .|++||.|++||.|..
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 45777776 4689999999999984
No 278
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=28.99 E-value=38 Score=28.68 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=24.3
Q ss_pred cChhHHhHHHHcCCCCCccccCCCCCccchhhHHHH
Q 014404 135 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 170 (425)
Q Consensus 135 asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~ 170 (425)
..|.|.++++++|||++... + .|+.+|++.+
T Consensus 42 ~~~~a~~~l~~~Gid~~~~~---~--~l~~~~~~~~ 72 (140)
T smart00226 42 ADPRAVEVLKEHGIALSHHA---S--QLTSSDFKNA 72 (140)
T ss_pred CCHHHHHHHHHcCcCcccee---c--cCCHHHHHhC
Confidence 68999999999999987432 2 7888887654
No 279
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=28.94 E-value=71 Score=37.65 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=31.1
Q ss_pred EEEcCCCCeecCCCeEEEEEe-------cceeeEEecCCCeEEE
Q 014404 15 RWLKKEGDKVSPGEVLCEVET-------DKATVEMECMEEGYLA 51 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l~~vet-------~K~~~~i~a~~~G~v~ 51 (425)
-++|+.|+.|+++|+|+|+-+ .|+.=.|.|+.+|.|.
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 368999999999999999976 3566679999999763
No 280
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=28.24 E-value=73 Score=32.03 Aligned_cols=22 Identities=18% Similarity=-0.050 Sum_probs=14.8
Q ss_pred EEecCCCeeeeCCCEEEEEeccc
Q 014404 53 IVKGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 53 ~~~~~g~~~v~~g~~l~~~~~~~ 75 (425)
..+++| +.+..|++|+.+...-
T Consensus 75 ~a~~eG-~~v~~gepvl~i~G~~ 96 (352)
T PRK07188 75 RYLKDG-DIINPFETVLEIEGPY 96 (352)
T ss_pred EEcCCC-CEecCCCEEEEEEEcH
Confidence 456777 5777777777765443
No 281
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=27.37 E-value=72 Score=27.92 Aligned_cols=44 Identities=23% Similarity=0.444 Sum_probs=26.7
Q ss_pred CeecCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeeCCCEEEEEeccccc
Q 014404 22 DKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 77 (425)
Q Consensus 22 d~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~~~~~~ 77 (425)
=.+++|+-|+.++. +|+..-+.+.+| +.|..|+.|+.+.....+
T Consensus 74 ~~l~~G~~L~l~~v-----------eG~~v~~i~~~G-~rV~~gd~lA~v~T~KGe 117 (150)
T PF09891_consen 74 ILLKKGTELCLVPV-----------EGYQVYPIVDEG-DRVRKGDRLAYVTTRKGE 117 (150)
T ss_dssp EEE-TT-B-EEEEE-----------ESSEEEESS-TS-EEE-TT-EEEEEE-TTS-
T ss_pred EEECCCCEEEEEEe-----------cceEEEEEcccC-cEeccCcEEEEEEecCcc
Confidence 35677777777664 466667888999 799999999988765444
No 282
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=26.80 E-value=20 Score=29.62 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=8.1
Q ss_pred EEEcCCCCeecCCCeE
Q 014404 15 RWLKKEGDKVSPGEVL 30 (425)
Q Consensus 15 ~~~v~~Gd~V~~g~~l 30 (425)
++.|++||.|+.||+|
T Consensus 45 eLiV~eG~~V~~dqpL 60 (118)
T PF01333_consen 45 ELIVSEGQSVKADQPL 60 (118)
T ss_dssp -BS--TT-EETTT-BS
T ss_pred eEEEcCCCEEecCCcc
Confidence 3557777777777776
No 283
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=25.12 E-value=83 Score=31.61 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=41.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EecCCCeEEEEEEecCCCeeeeCCCEEEEEe
Q 014404 10 EGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~~g~~l~~vet~K~~~~-i~a~~~G~v~~~~~~~g~~~v~~g~~l~~~~ 72 (425)
.|.+..|.-..+..|++||.+...+---+.+- .+++. .+ +..+++| +.|..||.|+.+.
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g-~~Vr~Gq~lg~~~ 339 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPN-QTVSVGQRLGGVG 339 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCC-CEEEeeeeccccC
Confidence 35566677777889999999998886433332 33443 23 4567899 7999999998653
No 284
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=24.50 E-value=58 Score=28.05 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=23.8
Q ss_pred cChhHHhHHHHcCCCCCccccCCCCCccchhhHHH
Q 014404 135 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 169 (425)
Q Consensus 135 asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~ 169 (425)
+.|.+.++++++|||++.-. .-.|+.+|+..
T Consensus 45 ~~~~a~~~l~~~Gid~~~h~----s~~lt~~~~~~ 75 (144)
T PRK11391 45 ADATAADVAANHGVSLEGHA----GRKLTAEMARN 75 (144)
T ss_pred CCHHHHHHHHHcCCCcCCCc----cCcCCHHHHhh
Confidence 67999999999999987432 23578777764
No 285
>PF12728 HTH_17: Helix-turn-helix domain
Probab=24.03 E-value=56 Score=22.30 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=25.1
Q ss_pred hhHHhHHHHcCCCCCccccCCCCCccchhhHHHHHHhc
Q 014404 137 PVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR 174 (425)
Q Consensus 137 P~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~~~~~ 174 (425)
..+++++++.++..- +.|..=++.++||++|+++.
T Consensus 16 ~tv~~~~~~g~i~~~---~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 16 STVYRWIRQGKIPPF---KIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HHHHHHHHcCCCCeE---EeCCEEEEeHHHHHHHHHhC
Confidence 347778877766444 25666679999999999753
No 286
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=23.78 E-value=2.6e+02 Score=19.43 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred cCccEEEEeeeeeHHHHHHHHHHHhhHHHhhcCCcccHHHHHHHHHHHHHhhCCCCC
Q 014404 216 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCN 272 (425)
Q Consensus 216 ~~iP~~~~~~~iDvt~l~~~rk~~~~~~~~~~g~klt~~~~likA~~~Al~~~P~ln 272 (425)
...|+|++..+-++-..++.+.+.+ .-|++.-+++++..+|.+...++
T Consensus 2 r~~~~f~lRlP~~l~~~lk~~A~~~---------gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKERAEEN---------GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHHHHHHT---------TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHhccccCC
Confidence 3568888887765544443333322 36999999999999999876554
No 287
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=23.25 E-value=84 Score=24.90 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=25.3
Q ss_pred EEEEecccccchHHHHHHHHHHHHHhcC
Q 014404 392 VTLSCDHRVIDGAIGAEWLKAFKGYIEN 419 (425)
Q Consensus 392 lslt~DHRviDG~~aa~Fl~~l~~~le~ 419 (425)
.++.+|-|+.++....++++.+++++++
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 3688999999999999999999999874
No 288
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=23.20 E-value=58 Score=21.48 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=21.8
Q ss_pred hHHhHHHHcCCCCCccccCCCCCccchhhHHHHHH
Q 014404 138 VARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 172 (425)
Q Consensus 138 ~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~~~ 172 (425)
.++++.++..+....+ |..-++.++||++|++
T Consensus 17 ti~~~~~~g~i~~~~~---g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 17 TVYRLIHEGELPAYRV---GRHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHHcCCCCeEEe---CCeEEEeHHHHHHHHh
Confidence 4666766655554333 4556899999999985
No 289
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.06 E-value=71 Score=30.04 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=52.4
Q ss_pred ccchhhHHHHHHhcCCCCCCCCCCCCC-CCCCCCCccccccchhhhhhhhhccccccCccEEEEeeeeeHHHHHHHHHHH
Q 014404 161 LIVKADIEDYLASRGKEVPAKAPKGKD-VAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQL 239 (425)
Q Consensus 161 rI~~~DV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~rk~~a~~m~~s~~~iP~~~~~~~iDvt~l~~~rk~~ 239 (425)
-|++.||++.+++....+.---.+.++ ...|-..+..+|+..|-. +-.|..++.-.|.+|+..+.+. +.+.+.-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~v~i~~SG~sak~~Pl~~~~~~~~Ia~NG--s~~~~~~~~ikP~~Yv~tD~~F--~~q~~~~F 81 (269)
T PRK09822 6 FITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMKDVIAVNG--SVQYLLNNNVKPFLYLLTDVRF--LHRRREDF 81 (269)
T ss_pred cccHHHHHHHHhcccCCCEEEEecCcccccCchHHhccCCEEEEcc--HHHHHhhcCCceEEEEeeccch--hhhCHHHH
Confidence 588999999997654321000000000 111212222233333322 2345567778999999998764 33333322
Q ss_pred hhHHHhh--cCCcccHHH-HHHHHHHHHHhhCCCCCceecC
Q 014404 240 NSIQEAS--AGKRISVND-LVIKAAALALRKVPRCNSSWAD 277 (425)
Q Consensus 240 ~~~~~~~--~g~klt~~~-~likA~~~Al~~~P~ln~~~~~ 277 (425)
-...... .+.++-.+. ....-..-+|+.+|.+|+.+..
T Consensus 82 ~~~~r~S~~~~~~~d~~~~a~~~~~~Y~l~~~~~~~~~~~~ 122 (269)
T PRK09822 82 YNFSRNSQFTIVNLDVYEQASVDDQKYIEENCLIIRSFYRR 122 (269)
T ss_pred HHHhhhcceeeecHHHhcccCcchhhhhhhcCchhhhhhhh
Confidence 2111100 111111110 0112245578888888887753
No 290
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=22.90 E-value=92 Score=29.88 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=8.7
Q ss_pred EecCCCeeeeCCCEEEEEe
Q 014404 54 VKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 54 ~~~~g~~~v~~g~~l~~~~ 72 (425)
.+.+| +.+..|++++.+.
T Consensus 55 ~~~eG-~~v~~g~~vl~i~ 72 (281)
T cd00516 55 AVPEG-TVVEPGEPLLTIE 72 (281)
T ss_pred ECCCC-CEecCCCEEEEEE
Confidence 34455 3555555555443
No 291
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.01 E-value=89 Score=26.34 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=29.9
Q ss_pred ChhHHhHHHHcCCCCCccccCCCCCccchhhHHHHHHh
Q 014404 136 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173 (425)
Q Consensus 136 sP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~~~~ 173 (425)
.-..++.|++.|++...|+=+|+ -||++||+.+.+.
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~A 82 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQRA 82 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHHH
Confidence 44578899999999999987774 6999999998653
No 292
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=21.68 E-value=3.2e+02 Score=24.68 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=36.5
Q ss_pred eEEEEEEEcCCCCeec--------CCCe-EEEEEecceeeEEecCCCeEE-EE--EEecCCCeeeeCCCEEEEEe
Q 014404 10 EGNIARWLKKEGDKVS--------PGEV-LCEVETDKATVEMECMEEGYL-AK--IVKGDGSKEIKVGEVIAITV 72 (425)
Q Consensus 10 eg~i~~~~v~~Gd~V~--------~g~~-l~~vet~K~~~~i~a~~~G~v-~~--~~~~~g~~~v~~g~~l~~~~ 72 (425)
+|+|.+....+|+... +++- ++.+||+.-.+-+.. ..|.+ .+ .+.++| +.++.|+.++.+.
T Consensus 80 ~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g-~~v~kGeeiG~f~ 152 (189)
T TIGR00164 80 GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEG-EKVSRGQRIGMIR 152 (189)
T ss_pred ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCC-CEEecCcEEEEEe
Confidence 5888888888887332 3343 356777532222221 22332 22 255789 7999999999874
No 293
>PRK10126 tyrosine phosphatase; Provisional
Probab=21.35 E-value=65 Score=27.78 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=23.6
Q ss_pred cChhHHhHHHHcCCCCCccccCCCCCccchhhHHH
Q 014404 135 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 169 (425)
Q Consensus 135 asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~ 169 (425)
+.|.|.+.++++|||++.-. .-.|+.+|++.
T Consensus 45 ~~~~a~~~l~~~Gid~~~h~----sr~lt~~~~~~ 75 (147)
T PRK10126 45 ADPTAISVAAEHQLSLEGHC----ARQISRRLCRN 75 (147)
T ss_pred CCHHHHHHHHHcCCCcCCCc----cccCCHHHhcc
Confidence 68999999999999987532 23577777754
No 294
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=21.17 E-value=1.1e+02 Score=30.09 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=13.1
Q ss_pred ecCCCeeeeCCCEEEEEeccc
Q 014404 55 KGDGSKEIKVGEVIAITVEEE 75 (425)
Q Consensus 55 ~~~g~~~v~~g~~l~~~~~~~ 75 (425)
+++| +.|..|++|+.+....
T Consensus 58 ~~dG-~~v~~g~~i~~i~G~~ 77 (302)
T cd01571 58 LPEG-TIFNPKEPVLRIEGPY 77 (302)
T ss_pred eCCC-CEECCCCcEEEEEeCH
Confidence 5677 5777777777665443
No 295
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=20.91 E-value=89 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=24.8
Q ss_pred cChhHHhHHHHcCCCCCccccCCCCCccchhhHHHH
Q 014404 135 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 170 (425)
Q Consensus 135 asP~aR~lA~e~gIdl~~v~gtG~~GrI~~~DV~~~ 170 (425)
+.|.|.+.++++|||++.-.. -.++..|+..+
T Consensus 46 ~~~~a~~~l~~~gid~~~~~s----~~l~~~~~~~~ 77 (138)
T PF01451_consen 46 VDPRAIAVLKEHGIDISGHRS----RQLTEEDLDEA 77 (138)
T ss_dssp STHHHHHHHHHTTSSCTTSBB----CBGGHHHHHHS
T ss_pred ccchHHHHHHHhCCCccccee----ccccccccccC
Confidence 689999999999999986543 25777776654
No 296
>PRK09294 acyltransferase PapA5; Provisional
Probab=20.29 E-value=82 Score=31.98 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.1
Q ss_pred EEEEecccccchHHHHHHHHHHHHHh
Q 014404 392 VTLSCDHRVIDGAIGAEWLKAFKGYI 417 (425)
Q Consensus 392 lslt~DHRviDG~~aa~Fl~~l~~~l 417 (425)
+.+.+||-++||..+..|+++|..+.
T Consensus 113 l~l~~hH~i~DG~S~~~ll~el~~~Y 138 (416)
T PRK09294 113 VTLYIHHSIADAHHSASLLDELWSRY 138 (416)
T ss_pred EEEEeccEeEccccHHHHHHHHHHHH
Confidence 56789999999999999999998754
Done!