Query 014408
Match_columns 425
No_of_seqs 294 out of 2473
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1232 Proteins containing th 100.0 3.1E-73 6.7E-78 554.6 22.3 363 51-414 23-386 (511)
2 PRK11230 glycolate oxidase sub 100.0 1.3E-54 2.9E-59 456.6 38.1 325 80-412 19-343 (499)
3 PLN02805 D-lactate dehydrogena 100.0 1.3E-54 2.8E-59 459.9 37.3 325 75-411 91-417 (555)
4 TIGR00387 glcD glycolate oxida 100.0 2.2E-49 4.8E-54 409.0 31.3 286 120-412 1-286 (413)
5 COG0277 GlcD FAD/FMN-containin 100.0 1E-48 2.2E-53 407.0 33.4 321 86-412 2-325 (459)
6 PRK11183 D-lactate dehydrogena 100.0 1.7E-46 3.6E-51 388.8 28.0 273 80-367 3-329 (564)
7 PLN02441 cytokinin dehydrogena 100.0 6.3E-38 1.4E-42 329.0 25.5 233 93-334 41-281 (525)
8 KOG1231 Proteins containing th 100.0 7.6E-38 1.7E-42 312.9 15.2 326 85-422 29-375 (505)
9 PRK11282 glcE glycolate oxidas 100.0 2.1E-36 4.5E-41 304.8 19.7 190 125-317 3-193 (352)
10 TIGR01676 GLDHase galactonolac 100.0 9.7E-34 2.1E-38 297.3 22.7 201 107-318 52-252 (541)
11 TIGR01678 FAD_lactone_ox sugar 100.0 1.4E-32 2.9E-37 285.4 23.1 201 107-318 5-205 (438)
12 TIGR01679 bact_FAD_ox FAD-link 100.0 3.5E-32 7.5E-37 281.4 20.8 198 107-318 2-199 (419)
13 TIGR01677 pln_FAD_oxido plant- 100.0 1.8E-31 3.8E-36 283.1 22.2 207 103-317 18-234 (557)
14 KOG1233 Alkyl-dihydroxyacetone 100.0 3.6E-31 7.8E-36 260.1 19.0 266 66-337 103-383 (613)
15 PLN02465 L-galactono-1,4-lacto 100.0 3.6E-29 7.7E-34 264.8 22.8 202 106-318 86-287 (573)
16 PF01565 FAD_binding_4: FAD bi 100.0 4.4E-29 9.5E-34 219.7 13.1 139 117-256 1-139 (139)
17 PRK13905 murB UDP-N-acetylenol 99.9 1.6E-25 3.5E-30 222.0 15.3 251 100-383 17-282 (298)
18 PRK14652 UDP-N-acetylenolpyruv 99.9 1.9E-24 4.1E-29 214.4 18.6 272 78-383 2-285 (302)
19 PRK12436 UDP-N-acetylenolpyruv 99.9 9.8E-24 2.1E-28 209.6 18.7 189 81-292 5-197 (305)
20 PRK13906 murB UDP-N-acetylenol 99.9 1.6E-23 3.5E-28 208.2 18.8 193 79-292 3-197 (307)
21 PRK14653 UDP-N-acetylenolpyruv 99.9 4.1E-22 8.9E-27 196.9 15.8 190 80-293 3-194 (297)
22 TIGR00179 murB UDP-N-acetyleno 99.9 3.5E-22 7.6E-27 196.8 13.7 167 110-291 6-174 (284)
23 KOG4730 D-arabinono-1, 4-lacto 99.9 2.4E-21 5.1E-26 194.9 15.3 180 112-299 45-224 (518)
24 PRK13903 murB UDP-N-acetylenol 99.9 7.6E-21 1.6E-25 192.3 16.9 173 100-293 19-197 (363)
25 PRK14649 UDP-N-acetylenolpyruv 99.8 3.4E-19 7.4E-24 176.4 21.7 260 100-383 7-281 (295)
26 PRK14650 UDP-N-acetylenolpyruv 99.8 1.3E-18 2.8E-23 171.9 14.8 260 94-383 13-286 (302)
27 COG0812 MurB UDP-N-acetylmuram 99.8 9.2E-18 2E-22 163.8 15.9 253 100-384 7-274 (291)
28 PRK00046 murB UDP-N-acetylenol 99.7 1.4E-17 3E-22 166.9 14.1 176 100-292 7-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 3.8E-17 8.3E-22 163.8 12.9 142 94-247 10-156 (354)
30 KOG1262 FAD-binding protein DI 99.6 7.2E-16 1.6E-20 152.8 7.9 147 165-316 106-252 (543)
31 PRK14651 UDP-N-acetylenolpyruv 99.6 1.3E-14 2.8E-19 141.7 14.2 161 100-292 7-170 (273)
32 PRK13904 murB UDP-N-acetylenol 99.4 1.1E-12 2.3E-17 127.2 10.5 156 99-294 4-161 (257)
33 PF02913 FAD-oxidase_C: FAD li 98.8 3.5E-09 7.5E-14 100.5 3.6 115 292-411 1-115 (248)
34 PRK09799 putative oxidoreducta 97.6 0.00011 2.5E-09 71.7 6.2 144 119-288 4-155 (258)
35 PF00941 FAD_binding_5: FAD bi 97.5 0.00011 2.4E-09 67.3 4.0 103 118-225 3-116 (171)
36 TIGR03312 Se_sel_red_FAD proba 97.4 0.0003 6.5E-09 68.7 6.3 101 120-225 4-110 (257)
37 TIGR02963 xanthine_xdhA xanthi 97.0 0.0016 3.5E-08 68.9 6.9 103 117-224 192-303 (467)
38 PRK09971 xanthine dehydrogenas 96.9 0.0015 3.3E-08 64.9 5.8 101 119-224 6-118 (291)
39 TIGR03195 4hydrxCoA_B 4-hydrox 96.7 0.0016 3.5E-08 65.6 4.4 101 119-224 6-117 (321)
40 TIGR03199 pucC xanthine dehydr 96.6 0.0016 3.4E-08 63.8 3.0 98 123-224 1-109 (264)
41 PLN02906 xanthine dehydrogenas 95.4 0.018 3.9E-07 68.2 5.3 103 118-224 229-350 (1319)
42 TIGR02969 mam_aldehyde_ox alde 95.4 0.028 6.1E-07 66.6 6.7 103 118-225 237-359 (1330)
43 PLN00192 aldehyde oxidase 95.3 0.031 6.7E-07 66.4 6.6 108 117-224 233-352 (1344)
44 COG1319 CoxM Aerobic-type carb 94.5 0.088 1.9E-06 52.2 6.5 105 117-225 3-118 (284)
45 COG4630 XdhA Xanthine dehydrog 93.5 0.18 4E-06 51.3 6.6 130 113-253 199-339 (493)
46 PF09330 Lact-deh-memb: D-lact 72.3 8 0.00017 38.2 5.6 45 298-342 1-45 (291)
47 KOG0430 Xanthine dehydrogenase 55.3 20 0.00043 41.9 5.5 106 118-227 215-334 (1257)
48 PF00076 RRM_1: RNA recognitio 37.1 98 0.0021 22.3 5.3 48 266-317 13-60 (70)
49 PF14259 RRM_6: RNA recognitio 36.4 1.2E+02 0.0027 22.2 5.8 46 267-316 14-59 (70)
50 PF07317 YcgR: Flagellar regul 35.3 1.6E+02 0.0035 24.5 6.8 66 123-204 4-69 (108)
51 PRK04322 peptidyl-tRNA hydrola 33.0 76 0.0017 27.1 4.5 43 105-149 38-81 (113)
52 cd03130 GATase1_CobB Type 1 gl 32.7 1.4E+02 0.003 27.7 6.6 78 69-156 3-91 (198)
53 COG4981 Enoyl reductase domain 31.5 62 0.0013 35.1 4.3 33 114-146 149-182 (717)
54 cd07033 TPP_PYR_DXS_TK_like Py 30.1 73 0.0016 28.3 4.1 33 114-146 120-153 (156)
55 COG1519 KdtA 3-deoxy-D-manno-o 29.1 4E+02 0.0087 28.1 9.7 68 81-149 218-293 (419)
56 cd02742 GH20_hexosaminidase Be 27.2 57 0.0012 32.5 3.1 28 124-151 69-98 (303)
57 cd06568 GH20_SpHex_like A subg 26.9 58 0.0012 33.0 3.1 28 124-151 72-101 (329)
58 TIGR00178 monomer_idh isocitra 26.8 3E+02 0.0064 30.4 8.4 120 123-255 308-447 (741)
59 cd06565 GH20_GcnA-like Glycosy 26.1 61 0.0013 32.3 3.1 24 123-146 56-79 (301)
60 PF00728 Glyco_hydro_20: Glyco 25.2 55 0.0012 32.8 2.6 29 123-151 69-99 (351)
61 smart00361 RRM_1 RNA recogniti 25.0 1.5E+02 0.0032 22.3 4.5 40 278-317 15-58 (70)
62 PF02779 Transket_pyr: Transke 24.3 1.1E+02 0.0023 27.8 4.2 36 114-149 134-172 (178)
63 cd06570 GH20_chitobiase-like_1 23.9 72 0.0016 32.1 3.2 28 124-151 65-94 (311)
64 cd06563 GH20_chitobiase-like T 23.3 73 0.0016 32.5 3.1 27 125-151 84-112 (357)
65 COG0351 ThiD Hydroxymethylpyri 23.2 5.1E+02 0.011 25.6 8.8 110 78-206 117-229 (263)
66 PF13893 RRM_5: RNA recognitio 22.9 2E+02 0.0043 20.3 4.6 36 278-317 7-42 (56)
67 KOG3282 Uncharacterized conser 22.8 2.9E+02 0.0063 25.8 6.5 41 112-152 120-162 (190)
68 PF15608 PELOTA_1: PELOTA RNA 22.7 97 0.0021 26.0 3.2 36 114-149 53-89 (100)
69 cd06562 GH20_HexA_HexB-like Be 22.4 79 0.0017 32.2 3.2 28 125-152 68-97 (348)
70 PRK05583 ribosomal protein L7A 22.3 3.1E+02 0.0067 22.9 6.2 64 79-148 2-67 (104)
71 TIGR03752 conj_TIGR03752 integ 22.3 1.3E+02 0.0028 32.1 4.7 49 199-258 279-328 (472)
72 PRK14982 acyl-ACP reductase; P 21.7 1.2E+02 0.0027 30.9 4.3 88 66-155 14-107 (340)
73 cd06564 GH20_DspB_LnbB-like Gl 21.6 74 0.0016 32.0 2.8 27 125-151 80-108 (326)
No 1
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=3.1e-73 Score=554.57 Aligned_cols=363 Identities=60% Similarity=0.976 Sum_probs=350.2
Q ss_pred cccccceeccccccc-ccccccccccCCCCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHH
Q 014408 51 FGNASTIRYRCFGSE-ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEV 129 (425)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV 129 (425)
+..+....+..||++ |+.++|+|.|.+++++++..+++++|++.+.++++++..|++||+.+|++....|++|+|++||
T Consensus 23 ~~~~~~~~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eV 102 (511)
T KOG1232|consen 23 FNAILTRIRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEV 102 (511)
T ss_pred chhhhceeecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHH
Confidence 334444667779999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCC
Q 014408 130 SQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDL 209 (425)
Q Consensus 130 ~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~p 209 (425)
++|++||++.++.|+|+||+|++.|+++|+.+.||+++.+||+|+.+|+..++++|++||.++++.++++++|+.+|.|.
T Consensus 103 S~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDL 182 (511)
T KOG1232|consen 103 SAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDL 182 (511)
T ss_pred HHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEc
Q 014408 210 GAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT 289 (425)
Q Consensus 210 gs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl 289 (425)
|+.++|.|||+++|||||.+..|||+...+|+++|+|+|+|+++......+|+++|||+.++|+||||++||||++++-+
T Consensus 183 gAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~ 262 (511)
T KOG1232|consen 183 GAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILA 262 (511)
T ss_pred CCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHH
Q 014408 290 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESY 369 (425)
Q Consensus 290 ~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~ 369 (425)
.|.|+...++++..++++++.+++.++++.++++++||||||+.+++++.+++.....|+.++ .+||+|||++|++.++
T Consensus 263 ~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~-~pFyiLiETsGSn~dh 341 (511)
T KOG1232|consen 263 PPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDE-HPFYILIETSGSNKDH 341 (511)
T ss_pred cCCCcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCC-CceEEEEEecCCCccc
Confidence 999999999999999999999999999999999999999999999999999986688999887 8999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcceEEEeCCHHHHHHHHHHhccCccccc
Q 014408 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSI 414 (425)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lw~~R~~~~~~~~ 414 (425)
+++++++|++..++.+.+.|+++|+|+.|..++|++||++.++..
T Consensus 342 D~eKl~afl~d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~ 386 (511)
T KOG1232|consen 342 DEEKLTAFLEDCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQ 386 (511)
T ss_pred cHHHHHHHHHHhhhhcccccceecCCHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999999999999999999999998743
No 2
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.3e-54 Score=456.55 Aligned_cols=325 Identities=25% Similarity=0.402 Sum_probs=288.2
Q ss_pred HHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcccc
Q 014408 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (425)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~ 159 (425)
.+++++|++++|.++|+++++.+..|++|+...++..|.+|++|+|++||+++|++|+++++||+|||+|||++|++.|.
T Consensus 19 ~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~ 98 (499)
T PRK11230 19 TSLLMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL 98 (499)
T ss_pred HHHHHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC
Confidence 46789999999999999999999999999866778899999999999999999999999999999999999999999988
Q ss_pred CCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccce
Q 014408 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGN 239 (425)
Q Consensus 160 ~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~ 239 (425)
.++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++...|||||++++|+||.++.+||.++|+
T Consensus 99 ~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~ 178 (499)
T PRK11230 99 EKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHN 178 (499)
T ss_pred CCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhh
Confidence 88999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHH
Q 014408 240 VLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK 319 (425)
Q Consensus 240 V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~ 319 (425)
|++++||++||++++++... +++.||||+++|+||+|+|||||++|||+.|.|+.....++.|++++++.+++.++++
T Consensus 179 v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~- 256 (499)
T PRK11230 179 LLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA- 256 (499)
T ss_pred eeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh-
Confidence 99999999999999987653 4567999999999999999999999999999999988889999999999999988864
Q ss_pred cCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceEEEeCCHHHH
Q 014408 320 LGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQA 399 (425)
Q Consensus 320 ~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 399 (425)
.+..|.++|+||+..++++.++. ....|.+ ..+++++|++|++++ +...++.+.+.+.+.+ ..+..++++++++
T Consensus 257 ~~~~p~~~el~d~~~~~~~~~~~-~~~~p~~---~~~~ll~e~~g~~~~-v~~~~~~l~~~~~~~g-~~~~~~a~~~~~~ 330 (499)
T PRK11230 257 AGIIPGGLEMMDNLSIRAAEDFI-HAGYPVD---AEAILLCELDGVESD-VQEDCERVNDILLKAG-ATDVRLAQDEAER 330 (499)
T ss_pred cCCCcEEEEeeCHHHHHHHHHhc-CCCCCCC---cceEEEEEecCCchH-HHHHHHHHHHHHHhcC-CceEEEeCCHHHH
Confidence 46779999999999998877654 2223332 357899999998754 3445566655554444 4577888999999
Q ss_pred HHHHHHhccCccc
Q 014408 400 SSFWRIREVPNFN 412 (425)
Q Consensus 400 ~~lw~~R~~~~~~ 412 (425)
+++|+.|+.+.++
T Consensus 331 ~~~W~~R~~~~~~ 343 (499)
T PRK11230 331 VRFWAGRKNAFPA 343 (499)
T ss_pred HHHHHHHHhhHHH
Confidence 9999999876654
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.3e-54 Score=459.92 Aligned_cols=325 Identities=27% Similarity=0.397 Sum_probs=284.0
Q ss_pred cCCCCHHHHHHHHHhhCCCceecChHHHHHhhhccccccC--CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 014408 75 FSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYR--GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (425)
Q Consensus 75 ~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~--~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~ 152 (425)
+....++++++|+++++++ |.+++..+..|.+||...++ ..|.+|++|+|++||+++|++|+++++|++|+|||||+
T Consensus 91 ~~~~~~~~~~~L~~~l~~~-v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~ 169 (555)
T PLN02805 91 HKLVPQELIDELKAILQDN-MTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSI 169 (555)
T ss_pred cccchHHHHHHHHHhcCCc-eecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence 4455577889999999854 99999999999999753332 57999999999999999999999999999999999999
Q ss_pred CCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccc
Q 014408 153 VGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVR 232 (425)
Q Consensus 153 ~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~ 232 (425)
.|++.+..++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++ .+||||++++|++|..+.+
T Consensus 170 ~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~--~~TIGG~ia~n~~G~~s~~ 247 (555)
T PLN02805 170 EGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVR 247 (555)
T ss_pred CCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCcc--ccChhhHhhCCCcccccCc
Confidence 99998877899999999999999999999999999999999999999999999999974 5899999999999999999
Q ss_pred cccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHH
Q 014408 233 YGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (425)
Q Consensus 233 yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a 312 (425)
||.++|+|+++|+|++||++++++....|++.||||+|+++||+|+|||||+++||+.|.|+.....++.|++++++.++
T Consensus 248 yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~a 327 (555)
T PLN02805 248 YGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADV 327 (555)
T ss_pred cccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHH
Confidence 99999999999999999999998777678889999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHcCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceEEE
Q 014408 313 LREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVI 392 (425)
Q Consensus 313 ~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (425)
+.++++ .+..|+++|+||+..++++..+. + ..++ ..++|++|++|++++ ++++.+.+.+.+.+.+ ..+.++
T Consensus 328 v~~i~~-~g~~psa~ElmD~~~~~~~~~~~-~--~~~p---~~~~Ll~e~~g~~~~-~~~~~~~~~~i~~~~g-~~~~~~ 398 (555)
T PLN02805 328 AIATML-SGIQVSRVELLDEVQIRAINMAN-G--KNLP---EAPTLMFEFIGTEAY-AREQTLIVQKIASKHN-GSDFVF 398 (555)
T ss_pred HHHHHh-CCCCcEEEEEECHHHHHHHHHhc-C--CCCC---cceEEEEEEecCcHH-HHHHHHHHHHHHHhCC-CceEEE
Confidence 988764 47789999999999999886643 2 2333 247899999998764 3444454444444444 468899
Q ss_pred eCCHHHHHHHHHHhccCcc
Q 014408 393 AQDINQASSFWRIREVPNF 411 (425)
Q Consensus 393 a~~~~~~~~lw~~R~~~~~ 411 (425)
++++++++++|+.|+.+.+
T Consensus 399 a~~~~e~~~lW~~R~~~~~ 417 (555)
T PLN02805 399 AEEPEAKKELWKIRKEALW 417 (555)
T ss_pred eCCHHHHHHHHHHHHHHHH
Confidence 9999999999999997654
No 4
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=2.2e-49 Score=408.98 Aligned_cols=286 Identities=31% Similarity=0.496 Sum_probs=253.5
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHH
Q 014408 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLD 199 (425)
Q Consensus 120 Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~ 199 (425)
|++|+|++||+++|++|+++++|++|+|+|||+.|++.|.+++++||+++||+|+++|+++.+++||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999999999999999999999999999999988877899999999999999999999999999999999999999
Q ss_pred hCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCc
Q 014408 200 DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSL 279 (425)
Q Consensus 200 ~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~Gtl 279 (425)
++|+.+|++|++...+||||++++|++|.++.+||.++|+|++++||++||++++++....|+..||||+++++||+|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 99999999999888899999999999999999999999999999999999999999887778999999999999999999
Q ss_pred eEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEE
Q 014408 280 GIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVL 359 (425)
Q Consensus 280 GIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~ll 359 (425)
||||+++||++|.|+......+.|++++++.+++.++++ .+..|+++|+||+..++.+.++. . ..++.. ..++++
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~p~a~el~d~~~~~~~~~~~-~--~~~p~~-~~~~l~ 235 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA-AGIIPAGMEFLDNLSIKAVEDIS-G--IGLPKD-AGAILL 235 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh-cCCCcEEEEccCHHHHHHHHHhc-C--CCCCCC-CceEEE
Confidence 999999999999999988888999999999999988864 46789999999999998876642 2 223332 457899
Q ss_pred EEecCCChHHHHHHHHHHHHHHhhCCCcceEEEeCCHHHHHHHHHHhccCccc
Q 014408 360 IETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFN 412 (425)
Q Consensus 360 ie~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lw~~R~~~~~~ 412 (425)
+|++|.+++ ++++++.+.+.+.+.+ ..+.+++.++++.+++|+.|+...+.
T Consensus 236 v~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~W~~r~~~~~~ 286 (413)
T TIGR00387 236 VEIDGVHEA-VERDEEKIEQICRKNG-AVDVQIAQDEEERALLWAGRRNAFKA 286 (413)
T ss_pred EEecCCcHH-HHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHHHHHhHHH
Confidence 999998765 3455566555444444 45678889999999999999975553
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1e-48 Score=407.03 Aligned_cols=321 Identities=37% Similarity=0.600 Sum_probs=277.4
Q ss_pred HHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEE
Q 014408 86 FKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVII 165 (425)
Q Consensus 86 L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvI 165 (425)
+.++++...+.+++.....|..||+ .++..|.+|+.|+|++||++++++|+++++||+|||+|||++|+++|. ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvvl 79 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVL 79 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEEE
Confidence 5677888888999999999999997 778889999999999999999999999999999999999999999997 79999
Q ss_pred EeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEE
Q 014408 166 NMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEA 245 (425)
Q Consensus 166 dls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~lev 245 (425)
|+++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++.+.|||||+|++|++|.++.+||.++|+|+++++
T Consensus 80 ~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 80 DLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred EchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH---HHcCC
Q 014408 246 VLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK---RKLGE 322 (425)
Q Consensus 246 Vl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~ 322 (425)
|++||++++++.+..|+++||||+++++||+|+|||||+++||+.|.|+...+.+..+++.+.+........ ...+.
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999989999999887776443332 12235
Q ss_pred CceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceEEEeCCHHHHHHH
Q 014408 323 ILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSF 402 (425)
Q Consensus 323 ~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~l 402 (425)
.+.++|+||.. +..+..+......+.. ...++++|+.|.+..........+.+.+.+.+...+..++.+.++..++
T Consensus 240 ~~~~~e~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
T COG0277 240 IPAALEFMDRP-IKAAEAYLGGGALPLE---APARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARL 315 (459)
T ss_pred Cceeeeecchh-HHHHHHhccccCCCCC---CceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHH
Confidence 68999999998 4444444322222222 2378999999988444455566666666555545678899999999999
Q ss_pred HHHhccCccc
Q 014408 403 WRIREVPNFN 412 (425)
Q Consensus 403 w~~R~~~~~~ 412 (425)
|..|+.....
T Consensus 316 ~~~r~~~~~~ 325 (459)
T COG0277 316 WLARKGALAA 325 (459)
T ss_pred HHHHHHHHHH
Confidence 9999976554
No 6
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-46 Score=388.78 Aligned_cols=273 Identities=20% Similarity=0.311 Sum_probs=246.9
Q ss_pred HHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcccc
Q 014408 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (425)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~ 159 (425)
++++++|++++|+++|++++..+..|++||. .+.+.|.+||+|.|++||+++|++|+++++||+|||||||++||++|.
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-SGQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccC
Confidence 4678999999999999999999999999985 467889999999999999999999999999999999999999999996
Q ss_pred CC-----eEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCc-CcceeccccccccCcCCcccc
Q 014408 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (425)
Q Consensus 160 ~~-----gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~-~~~tvGG~va~nagG~~~~~y 233 (425)
.+ +||||+++||+|+++| ++.+++|||||++.+|+++|+++|+.++++|++. ..|||||+|++|+||....||
T Consensus 82 ~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRg 160 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRG 160 (564)
T ss_pred CCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEc
Confidence 53 7999999999999999 5678999999999999999999999988888553 346899999999999999999
Q ss_pred ccccceEeEEEEEecCCce-------eeccCCc---cC--CCCCC----------------------------------C
Q 014408 234 GSLHGNVLGLEAVLANGDV-------IDMLGTL---RK--DNTGY----------------------------------D 267 (425)
Q Consensus 234 G~~~d~V~~levVl~dG~i-------v~~~~~~---~k--~~~g~----------------------------------d 267 (425)
|.+.++++. ++|++||++ ++.+.+. .+ ++.|| |
T Consensus 161 ga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaD 239 (564)
T PRK11183 161 PAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNAD 239 (564)
T ss_pred chhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCC
Confidence 999999999 999999999 6655543 11 56788 9
Q ss_pred chhhh--hcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhcCC
Q 014408 268 LKHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGV 345 (425)
Q Consensus 268 L~~~~--~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~ 345 (425)
+.++| .||+|+|||| +++|+++|.|+...++++.++|.+++.++.+.+....+..|.++||||+.+++++++|.
T Consensus 240 l~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~yg--- 315 (564)
T PRK11183 240 PRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYG--- 315 (564)
T ss_pred HHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhC---
Confidence 99999 9999999999 99999999999999999999999999999999988778999999999999999999874
Q ss_pred CCCCCCCCcceEEEEEecCCCh
Q 014408 346 RNPFSSSMHNFYVLIETTGSEE 367 (425)
Q Consensus 346 ~~~l~~~~~~~~llie~~g~~~ 367 (425)
...+++|+.-|.+.
T Consensus 316 --------kd~~~~i~~~gt~~ 329 (564)
T PRK11183 316 --------KDTFLMIDKLGTDK 329 (564)
T ss_pred --------CccEEehhhhCchh
Confidence 24577788777764
No 7
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=6.3e-38 Score=328.95 Aligned_cols=233 Identities=18% Similarity=0.256 Sum_probs=209.2
Q ss_pred CceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHH--hCCCcEEEeCCCCCCCCCccccCCeEEEEeCCC
Q 014408 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCN--SRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSM 170 (425)
Q Consensus 93 ~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~--~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~l 170 (425)
..+.+|+..+..|++||+..+...|.+|++|+|++||+++|++|+ +++++|.+||+||++.|++.+ .+|++|||++|
T Consensus 41 ~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~L 119 (525)
T PLN02441 41 GHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSL 119 (525)
T ss_pred ceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCC
Confidence 468899999999999999989999999999999999999999997 679999999999999988876 57999999999
Q ss_pred CC------eeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEE
Q 014408 171 NN------IITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (425)
Q Consensus 171 n~------I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~le 244 (425)
|+ ++++|.+..+|+|++|++|.++.+++.++|+.++ +++....+||||++++++.|..+++||.+.|+|+++|
T Consensus 120 n~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~-~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~le 198 (525)
T PLN02441 120 RGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPR-SWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELD 198 (525)
T ss_pred CCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccC-CccccCceEEeEEcCCCCccccccccCcHHHhEEEEE
Confidence 99 6789999999999999999999999999998644 6666677899999999888888999999999999999
Q ss_pred EEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCc
Q 014408 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEIL 324 (425)
Q Consensus 245 vVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 324 (425)
||++||+++++++. .++||+|+++|++|+|||||++++++.|.|+...+..+.|++++++.+.++.+.+ +..+
T Consensus 199 VVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~--~~~~ 271 (525)
T PLN02441 199 VVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS--RPPE 271 (525)
T ss_pred EEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHh--cCCC
Confidence 99999999999754 5679999999999999999999999999999888888899999999999888865 3334
Q ss_pred eEEEeeCHHH
Q 014408 325 SAFEFLDNQS 334 (425)
Q Consensus 325 ~a~E~~d~~~ 334 (425)
.++|+++...
T Consensus 272 ~~~d~veg~~ 281 (525)
T PLN02441 272 NSFDYVEGFV 281 (525)
T ss_pred CCcceEeEEE
Confidence 5677766543
No 8
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=7.6e-38 Score=312.92 Aligned_cols=326 Identities=19% Similarity=0.278 Sum_probs=243.8
Q ss_pred HHHHhhCC---CceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhC--CCcEEEeCCCCCCCCCcccc
Q 014408 85 YFKELLGE---KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPV 159 (425)
Q Consensus 85 ~L~~ilg~---~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~--~ipv~~rGgGt~~~g~~~~~ 159 (425)
.+.+++|. ..+..++......++||...++-.|.+|+.|+|++||++++|+|+.+ .+||.+||+||++.|++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~ 108 (505)
T KOG1231|consen 29 SLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT 108 (505)
T ss_pred chhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC
Confidence 35555652 23455666677788898888889999999999999999999999999 99999999999999999987
Q ss_pred CCeEEEEeC---CCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCC--CcccCCCCcCcceeccccccccCcCCccccc
Q 014408 160 FDEVIINMG---SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 234 (425)
Q Consensus 160 ~~gvvIdls---~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl--~lp~~pgs~~~~tvGG~va~nagG~~~~~yG 234 (425)
.+|++|.|+ .|+++-.++.++.+|.|+||..|-+|++++.++|+ .++.||+. .||||++++.+.|...+|||
T Consensus 109 ~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~---ltVGGtlsnagiggqafRyG 185 (505)
T KOG1231|consen 109 RGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP---LTVGGTLSNAGIGGQAFRYG 185 (505)
T ss_pred CCCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc---eeecceeccCccccceeecc
Confidence 888766654 46776677778899999999999999999999999 68888874 78999999999999999999
Q ss_pred cccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCC---cceeEEEE-EcCCHHHHH
Q 014408 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL---SSVNLAFL-ACKDYFSCQ 310 (425)
Q Consensus 235 ~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p---~~~~~~~~-~~~~~~~~~ 310 (425)
+..+||++++||+++|++++|+.+ .|++|+.++.|++|+|||||+++++|.|+| +....... .|+.++.+.
T Consensus 186 pqi~NV~~LdVVtgkGeiv~cs~r-----~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~ 260 (505)
T KOG1231|consen 186 PQISNVIELDVVTGKGEIVTCSKR-----ANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAA 260 (505)
T ss_pred chhhceEEEEEEcCCCcEEecccc-----cCceeeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhh
Confidence 999999999999999999999876 789999999999999999999999999999 44333333 566666554
Q ss_pred HHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhcCCCC------CCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhhC
Q 014408 311 KLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRN------PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEG 384 (425)
Q Consensus 311 ~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~------~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~ 384 (425)
...++... .+...+.+|..|...+..++... ..-+ .+... ..-.+..|+.|..+......- .+.+.....
T Consensus 261 ~~~~~gl~-~n~r~s~f~l~D~~~i~~~~~~~-~~~yclev~ky~d~~-e~pti~~e~~~l~~~l~~~~~-~~~~~~v~y 336 (505)
T KOG1231|consen 261 IVARNGLQ-SNIRVSRFELLDEVQIAAINSDH-STNYCLEVAKYYDLT-EAPTLFQEIGGLSEKLNYAPT-FIVEQDVQY 336 (505)
T ss_pred hhhhcccc-ccceeeccccCcHHHHHHHHhcC-CeeeeeehhhccCcc-cCchHHHHHhccchhhhccch-hhhhhhhHH
Confidence 44323221 13335669999999998887642 2221 11111 112456777776544322221 122222221
Q ss_pred CCcce-EEEeCCHHHHHHHHHHhccCccccccchhhhhh
Q 014408 385 GLISD-GVIAQDINQASSFWRIREVPNFNSIYYPCVQDY 422 (425)
Q Consensus 385 ~~~~~-~~~a~~~~~~~~lw~~R~~~~~~~~~~~~~~~~ 422 (425)
....+ +.++.++...+.||++||-=.-..+|-+++.+|
T Consensus 337 ~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~f 375 (505)
T KOG1231|consen 337 HDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDF 375 (505)
T ss_pred HHhhhHhhhcccchhhcccccCCCchheeecccccchhh
Confidence 11234 667788888999999999722224466666544
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=304.78 Aligned_cols=190 Identities=22% Similarity=0.341 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCC
Q 014408 125 TTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI 204 (425)
Q Consensus 125 s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~ 204 (425)
..+||+++|++|+++++||+|+|+||+...+. +. ++++|||++||+|+++|+++.+|+|+||+++.+|+++|.++|+.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~ 80 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQM 80 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 47999999999999999999999998644443 32 46799999999999999999999999999999999999999999
Q ss_pred cccCCCCcC-cceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEE
Q 014408 205 MPLDLGAKG-SCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVT 283 (425)
Q Consensus 205 lp~~pgs~~-~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT 283 (425)
+|++|+..+ .+||||++++|++|+++.+||.++|+|+++++|++||++++++.+..|+.+||||+++++||+|+|||||
T Consensus 81 lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVit 160 (352)
T PRK11282 81 LPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLL 160 (352)
T ss_pred eCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhhe
Confidence 998876544 4899999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 284 KVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 284 ~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
+++||++|.|+...+..+.++ .+++.+++.++.
T Consensus 161 evtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 161 EVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred EEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999998776555554 566677766665
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=9.7e-34 Score=297.33 Aligned_cols=201 Identities=18% Similarity=0.306 Sum_probs=181.5
Q ss_pred hccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEe
Q 014408 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (425)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~ve 186 (425)
++|++.+...|..+++|+|++||+++|+.|++++.+|+|+|+|||+++.+.+ ++.+|||++||+|+++|+++++|+||
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 5899888999999999999999999999999999999999999999887774 45589999999999999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCC
Q 014408 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (425)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~ 266 (425)
||+++.+|.++|.++|+.+| ++++...+||||++++|++|.+ .+||.++|+|+++++|++||++++++.. .++
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~p 202 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDP 202 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCC-----CCH
Confidence 99999999999999999997 5667788999999999999985 5899999999999999999999998754 457
Q ss_pred CchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 014408 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (425)
Q Consensus 267 dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~ 318 (425)
||+++++||+|+|||||++||++.|.+......+ ..+++++.+.+.++.+
T Consensus 203 dLF~AargslG~LGVItevTLr~~Pa~~l~~~~~--~~~~~e~l~~~~~~~~ 252 (541)
T TIGR01676 203 ELFFLARCGLGGLGVVAEVTLQCVERQELVEHTF--ISNMKDIKKNHKKFLA 252 (541)
T ss_pred HHHHHHhcCCCceEeEEEEEEEEEeccceeEEEE--ecCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998765443 2678888888887754
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.4e-32 Score=285.42 Aligned_cols=201 Identities=25% Similarity=0.383 Sum_probs=180.1
Q ss_pred hccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEe
Q 014408 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (425)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~ve 186 (425)
++|+..+...|.+|+.|+|++||+++|++|+++++||+++|+||++++.+. .++++|||++||+|+++|+++++|+|+
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 478888888999999999999999999999999999999999999876554 578999999999999999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCC
Q 014408 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (425)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~ 266 (425)
||+++.+|.++|.++|+.+|. +++...+||||+++++++|. +.+||.++|+|+++++|++||+++++++. .++
T Consensus 83 aG~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~ 155 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNA 155 (438)
T ss_pred CCCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CCh
Confidence 999999999999999999885 55567789999999999996 68999999999999999999999998764 467
Q ss_pred CchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 014408 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (425)
Q Consensus 267 dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~ 318 (425)
||+++.+|++|+|||||++||++.|.+..... ....+++++.+.+.+..+
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHWK 205 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHhh
Confidence 99999999999999999999999998775543 356788888888776543
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=3.5e-32 Score=281.39 Aligned_cols=198 Identities=20% Similarity=0.314 Sum_probs=173.7
Q ss_pred hccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEe
Q 014408 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (425)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~ve 186 (425)
++|+..+...|.+|++|+|++||+++|+.|++ ||+++|+||++.+.+. .++++|||++||+|+++|+++++|+||
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEc
Confidence 46888778899999999999999999999974 7999999999876543 568999999999999999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCC
Q 014408 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (425)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~ 266 (425)
||+++.+|.++|.++|+.+|..|+. +.+||||+++++++|. +.+||.++|+|+++++|++||+++++++. .++
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~~~~-~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~ 149 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQGDI-DPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQ 149 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccCCCC-CCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCH
Confidence 9999999999999999999866654 4579999999999997 46899999999999999999999999764 568
Q ss_pred CchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 014408 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (425)
Q Consensus 267 dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~ 318 (425)
||+++++||+|+|||||++|||++|.+...... ...+++++.+.+.++.+
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVD 199 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHh
Confidence 999999999999999999999999998755443 33567777777777654
No 13
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.98 E-value=1.8e-31 Score=283.15 Aligned_cols=207 Identities=15% Similarity=0.171 Sum_probs=178.4
Q ss_pred HHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeC-CCCCCCCCcccc--CCeEEEEeCCCCCeeEEeCC
Q 014408 103 LAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG-GNTGLVGGSVPV--FDEVIINMGSMNNIITFDKG 179 (425)
Q Consensus 103 ~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG-gGt~~~g~~~~~--~~gvvIdls~ln~I~~id~~ 179 (425)
..+-++|++.+...|.+|++|+|++||+++|++|+++++||+++| +||++.+.+.+. +++++|||++||+|+++|.+
T Consensus 18 ~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~ 97 (557)
T TIGR01677 18 SNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDAT 97 (557)
T ss_pred ecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCC
Confidence 346679999999999999999999999999999999999999995 588887655442 24699999999998899999
Q ss_pred CCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCc-cccccccceEeEEEEEecCC------ce
Q 014408 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRL-VRYGSLHGNVLGLEAVLANG------DV 252 (425)
Q Consensus 180 ~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~-~~yG~~~d~V~~levVl~dG------~i 252 (425)
+.+|+|+||+++.+|.++|.++|+.+|..|.. ..+||||++++|++|... .+||.+.|+|+++++|++|| ++
T Consensus 98 ~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~-~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v 176 (557)
T TIGR01677 98 AMTVTVESGMSLRELIVEAEKAGLALPYAPYW-WGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKV 176 (557)
T ss_pred CCEEEECCCCcHHHHHHHHHHcCCEeccCCCC-CCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceE
Confidence 99999999999999999999999999977654 457999999999999766 48889999999999999999 78
Q ss_pred eeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 253 IDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 253 v~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
++++.. .++||+++++|++|+|||||++|||+.|.+.... .+.+...+.+.+.+.++.
T Consensus 177 ~~~s~~-----~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~--~~~~~~~~~l~~~~~~~~ 234 (557)
T TIGR01677 177 RILSEG-----DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSV--TYTMRDDSDFEDQFVTFG 234 (557)
T ss_pred EEeCCC-----CCHHHHHhhccCCCccEeeeEEEEEEEccccceE--EEEcCCHHHHHHHHHHhh
Confidence 877643 4679999999999999999999999999987332 345677777777666654
No 14
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=260.05 Aligned_cols=266 Identities=21% Similarity=0.338 Sum_probs=223.0
Q ss_pred ccccccccccCCCCHHHHHHHHHhhCCCceecChHHHHHh----h---h----ccccccCCCccEEEEcCCHHHHHHHHH
Q 014408 66 ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAA----N---E----DWMRKYRGSSKLLLQPRTTNEVSQILK 134 (425)
Q Consensus 66 ~~~~~r~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y----~---~----d~~~~~~~~p~~Vv~P~s~eeV~~iv~ 134 (425)
++++.++..-..-+.+++..|+. .+|....+..... . + -|-++++..|+.||.|++.+||.++|+
T Consensus 103 ~s~~p~d~P~~VeNedflh~Lke----t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~ 178 (613)
T KOG1233|consen 103 LSDVPIDAPRPVENEDFLHFLKE----TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVE 178 (613)
T ss_pred cccCcccCCCCccchHHHHHHHh----ccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHH
Confidence 66777776666677778888763 3344433322111 1 1 144677888999999999999999999
Q ss_pred HHHhCCCcEEEeCCCCCCCCCcc-ccCC---eEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCC
Q 014408 135 YCNSRLLAVVPQGGNTGLVGGSV-PVFD---EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLG 210 (425)
Q Consensus 135 ~a~~~~ipv~~rGgGt~~~g~~~-~~~~---gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pg 210 (425)
.|.+|++-++|.||||+.+++.. |.+. -+-+|++.||+|+.+|.++-++.+|+|++-.+|.+.|.+.|+.....|.
T Consensus 179 lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPD 258 (613)
T KOG1233|consen 179 LAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPD 258 (613)
T ss_pred HHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCC
Confidence 99999999999999999987643 3222 3568899999999999999999999999999999999999999999999
Q ss_pred CcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcc
Q 014408 211 AKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTP 290 (425)
Q Consensus 211 s~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~ 290 (425)
+...+|+||++++.|+|+.-.+||.+.|.|+.+++|+|.|.+-+. ...++-++|||+.+.+.||||||||||++++|++
T Consensus 259 S~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~-Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKir 337 (613)
T KOG1233|consen 259 SIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQ-CQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIR 337 (613)
T ss_pred ceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhh-hcCCcccCCCCcceEEeccCcceeEEEEEEEEEe
Confidence 999999999999999999999999999999999999999976652 2345667999999999999999999999999999
Q ss_pred cCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHH
Q 014408 291 PKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDL 337 (425)
Q Consensus 291 p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~ 337 (425)
|.|+......+.||++++-..+++++..+. -.|+++.+||+..+.+
T Consensus 338 PiPe~~ryGS~aFPNFEqGV~f~REvA~qR-CqPAS~RLMDN~QF~f 383 (613)
T KOG1233|consen 338 PIPEVKRYGSFAFPNFEQGVNFFREVAIQR-CQPASLRLMDNDQFVF 383 (613)
T ss_pred echhhhhcCccccCcHHHHHHHHHHHHHHh-cCchheeeecccceec
Confidence 999988888889999999999998875432 3489999999876643
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=3.6e-29 Score=264.78 Aligned_cols=202 Identities=20% Similarity=0.293 Sum_probs=176.3
Q ss_pred hhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEE
Q 014408 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVC 185 (425)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~v 185 (425)
.++|++.....|.+++.|+|++||+++|+.|+++++||+++|+||+..+... .++.+|||++||+|+++|++.++|+|
T Consensus 86 ~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~--td~glIdL~~l~~Il~vD~e~~~VtV 163 (573)
T PLN02465 86 VSNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAF--SREGMVNLALMDKVLEVDKEKKRVTV 163 (573)
T ss_pred ccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeee--CCCEEEECcCCCCcEEEeCCCCEEEE
Confidence 3589888899999999999999999999999999999999999999877655 34557899999999999999999999
Q ss_pred ecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCC
Q 014408 186 EAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTG 265 (425)
Q Consensus 186 eaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g 265 (425)
+||+++.+|.++|.++|+.++..+ +....||||+++++++|.+ .+||.+.|+|+++++|+++|++++++.. ..
T Consensus 164 ~AG~~l~~L~~~L~~~GLal~n~g-~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~ 236 (573)
T PLN02465 164 QAGARVQQVVEALRPHGLTLQNYA-SIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKE-----DD 236 (573)
T ss_pred ccCCCHHHHHHHHHHcCCEeccCC-CCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCC-----CC
Confidence 999999999999999999988544 4556799999999999974 5799999999999999999999998754 45
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~ 318 (425)
+||+++.+++.|+|||||++||++.|.+......+ ..+++++.+.+.++.+
T Consensus 237 pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~--~~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 237 PELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTF--VSNRKEIKKNHKKWLS 287 (573)
T ss_pred HHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEE--EecHHHHHHHHHHHHH
Confidence 79999999999999999999999999988654332 2457777777777654
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.96 E-value=4.4e-29 Score=219.69 Aligned_cols=139 Identities=29% Similarity=0.524 Sum_probs=130.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHH
Q 014408 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (425)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~ 196 (425)
|.+|++|+|++||++++++|+++++|+.++|+||++.+.+. ..++++|||++||+|+++|+++++++|+||+++.+|.+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999986665 46899999999999889999999999999999999999
Q ss_pred HHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeecc
Q 014408 197 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 256 (425)
Q Consensus 197 ~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~ 256 (425)
+|.++|+.++++|++...+|+||++++|++|..+.+||.+.|+|+++++|++||++++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999988888888899999999999999999999999999999999999999863
No 17
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=1.6e-25 Score=221.98 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=178.4
Q ss_pred HHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCC-CCCeeEEeC
Q 014408 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 178 (425)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~-ln~I~~id~ 178 (425)
.++..|+ +.++++.|.+++.|+|++||++++++|+++++|++++|+|||+.....+ .++++||+++ |++| ++
T Consensus 17 ~~l~~~~---t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i-~~-- 89 (298)
T PRK13905 17 EPLARYT---SFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI-EV-- 89 (298)
T ss_pred CCccccc---eeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE-Ee--
Confidence 4667776 5678899999999999999999999999999999999999998654432 2489999998 9987 44
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCccccc-cccceEeEEEEEecCCceeecc
Q 014408 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDML 256 (425)
Q Consensus 179 ~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG-~~~d~V~~levVl~dG~iv~~~ 256 (425)
++.+++|+||+++.+|.++|.++|+. +...++.++ ||||++++|+|+ || .++|+|+++++|++||+++++.
T Consensus 90 ~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG--TVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~~~~~~ 162 (298)
T PRK13905 90 EGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG--TVGGAVFMNAGA-----YGGETADVLESVEVLDRDGEIKTLS 162 (298)
T ss_pred cCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc--chhHHHHHcCCc-----CceEhheeEEEEEEEeCCCCEEEEE
Confidence 45789999999999999999999984 443345544 699999999987 77 6999999999999999999975
Q ss_pred CCccCCCCCCCchhhhhcCCCC--ceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCC--CceE-EEeeC
Q 014408 257 GTLRKDNTGYDLKHLFIGSEGS--LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGE--ILSA-FEFLD 331 (425)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~Gt--lGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~a-~E~~d 331 (425)
.. |+.+.++++.+. +||||+++|++.|..+ ..+++.++.+...|+...+ .|++ .=|.|
T Consensus 163 ~~--------e~~~~yR~s~~~~~~gII~~~~l~l~~~~~---------~~i~~~~~~~~~~R~~~~P~~~~s~Gs~FkN 225 (298)
T PRK13905 163 NE--------ELGFGYRHSALQEEGLIVLSATFQLEPGDK---------EEIKARMDELLARREATQPLEYPSAGSVFKN 225 (298)
T ss_pred HH--------HcCCcCccccCCCCCEEEEEEEEEEcCCCH---------HHHHHHHHHHHHHHHhcCCCCCCccceeeeC
Confidence 43 677788887654 7999999999999742 2344555555555543221 1332 33444
Q ss_pred HH---HHHHHHHh-hcCCCC---CCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014408 332 NQ---SMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (425)
Q Consensus 332 ~~---~~~~~~~~-~~~~~~---~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~ 383 (425)
.. +=.++.+. +.+.+. .+.+ ..+-.+|-..+.+..++.+.++.+.+.+.+
T Consensus 226 P~~~~ag~LIe~~GlkG~~~G~a~vs~--~hanfivN~g~at~~dv~~L~~~v~~~V~~ 282 (298)
T PRK13905 226 PPGHFAGKLIEEAGLKGYRIGGAQVSE--KHANFIINTGGATAADIEDLIEHVQKTVKE 282 (298)
T ss_pred CCCchHHHHHHHcCCCCCccCCEEEcc--ccCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 32 22444432 112211 1111 234456777776665555544444444443
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=1.9e-24 Score=214.40 Aligned_cols=272 Identities=19% Similarity=0.241 Sum_probs=186.6
Q ss_pred CCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcc
Q 014408 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (425)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~ 157 (425)
.+.+++++|++.+... +.. .+++..|+ +.++++.|++++.|+|++||++++++|+++++|++++|+|||+.-...
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~-~~~l~~~t---t~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~ 76 (302)
T PRK14652 2 VEATWRDEIARRVRGE-VLR-DAPLAPRT---AVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADA 76 (302)
T ss_pred chHHHHHHHHHhhccc-ccc-CCCccccc---EeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCC
Confidence 4567889999988765 444 35788887 568999999999999999999999999999999999999999853222
Q ss_pred ccCCeEEEEeCC-CCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc
Q 014408 158 PVFDEVIINMGS-MNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (425)
Q Consensus 158 ~~~~gvvIdls~-ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~ 235 (425)
. .++++|++++ ++.+ .. ++.+++|+||+.+.+|.+++.++|+. +.+..+.++ ||||+++||+|.. ||.
T Consensus 77 g-~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG--TvGGav~mNaGa~----gge 146 (302)
T PRK14652 77 G-VRGVVLRLPQDFPGE-ST--DGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG--TLGGAVAMNAGTK----LGE 146 (302)
T ss_pred C-EeeEEEEecCCcceE-Ee--cCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCc--chhHHHHHcCCCC----ceE
Confidence 1 1279999977 4444 33 45699999999999999999999996 333344444 6999999999853 788
Q ss_pred ccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHH
Q 014408 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLRE 315 (425)
Q Consensus 236 ~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~ 315 (425)
++|+|.++++|++|| ..+.. ++..++++.+.+.++ + ||||+++|++.|.+.. .+.+.++.+.+
T Consensus 147 i~d~v~~v~vv~~~G-~~~~~----~~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~~~---------~i~~~~~~~~~ 209 (302)
T PRK14652 147 MKDVVTAVELATADG-AGFVP----AAALGYAYRTCRLPP-G--AVITRVEVRLRPGDVA---------ASEALMRADRE 209 (302)
T ss_pred hhheEEEEEEECCCC-cEEee----hhhcCcccceeccCC-C--eEEEEEEEEEecCCHH---------HHHHHHHHHHH
Confidence 999999999999999 44433 345677777766654 3 8999999999995432 24445555555
Q ss_pred HHHHcCC--CceE-EEeeCH---HHHHHHHHh-hcCCCC---CCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014408 316 AKRKLGE--ILSA-FEFLDN---QSMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (425)
Q Consensus 316 ~~~~~~~--~p~a-~E~~d~---~~~~~~~~~-~~~~~~---~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~ 383 (425)
.|+...+ .|++ .=|-+. .+=.++.+. +.+.+. .+.+ ..+-.+|-..+.+.++..+.++.+-+.+.+
T Consensus 210 ~R~~~qP~~~psaGS~FkNP~~~~Ag~LIe~~GlkG~~~G~a~vS~--kHanfivN~g~ata~di~~Li~~v~~~V~~ 285 (302)
T PRK14652 210 RRRRTQPLDRPTFGSTFTNPPGDYAGRLVEAVGLKGHRVGGAIWSP--VHANFVTNLGGATARDVLALVRLARARVKE 285 (302)
T ss_pred HHHhcCCCCCCCccceeeCcCCccHHHHHHHcCCCCCccCCEEEcc--cccCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5543321 2433 223222 333444442 112211 1111 234456777776665545444444444433
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=9.8e-24 Score=209.64 Aligned_cols=189 Identities=18% Similarity=0.326 Sum_probs=151.1
Q ss_pred HHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccC
Q 014408 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVF 160 (425)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~ 160 (425)
+++++|.+++++..+..+ +.+..|++. ++++.|+++++|.|++||++++++|+++++|++++|+|||+...... .
T Consensus 5 ~~~~~l~~~l~~~~~~~~-~~l~~~tt~---~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g-~ 79 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQD-EMLKNHTHI---KVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGG-I 79 (305)
T ss_pred HHHHHHHHhcCcCceecC-CcchhccCc---ccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCC-e
Confidence 556788888876556656 478888743 57889999999999999999999999999999999999999633222 1
Q ss_pred CeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCccccc-cccc
Q 014408 161 DEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHG 238 (425)
Q Consensus 161 ~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG-~~~d 238 (425)
++++|++++|++| +++ +.+++|+||+.+.+|.+++.++|+. +....+.++ ||||++++|+|+ || .+.|
T Consensus 80 ~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPG--tVGGav~~NAGa-----yG~~~~d 149 (305)
T PRK12436 80 RGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPG--SVGGALYMNAGA-----YGGEISF 149 (305)
T ss_pred eEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCcc--chhHHHHhcCcc-----chhehhe
Confidence 3899999999988 665 4689999999999999999999985 332234444 499999999998 88 4778
Q ss_pred eEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcC--CCCceEEEEEEEEcccC
Q 014408 239 NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGS--EGSLGIVTKVSIHTPPK 292 (425)
Q Consensus 239 ~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs--~GtlGIIT~~tlkl~p~ 292 (425)
.+.+++++++||++++..++ ++.+..+.| .....||++++|++.|.
T Consensus 150 vl~~v~vv~~~G~v~~~~~~--------e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 150 VLTEAVVMTGDGELRTLTKE--------AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred eeeEEEEEeCCCCEEEEEHH--------HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 88899999999999998765 333444444 22347999999999875
No 20
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1.6e-23 Score=208.16 Aligned_cols=193 Identities=18% Similarity=0.312 Sum_probs=154.1
Q ss_pred CHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccc
Q 014408 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP 158 (425)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~ 158 (425)
+++++++|+++++...+..+ +++..|++ .+.++.|+++++|+|++||++++++|+++++|++++|+|||+......
T Consensus 3 ~~~~~~~l~~~~~~~~v~~~-~~L~~~tt---~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g 78 (307)
T PRK13906 3 NKDIYQALQQLIPNEKIKVD-EPLKRYTY---TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGG 78 (307)
T ss_pred hHHHHHHHHHhcCCCeeecC-CccccceE---cCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCC
Confidence 45578999999976567766 67888884 456789999999999999999999999999999999999998643322
Q ss_pred cCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCccccc-cc
Q 014408 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SL 236 (425)
Q Consensus 159 ~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG-~~ 236 (425)
.+|++|++++|++| +++. .+++|+||+.+.+|.+++.++|+. +....+.++ ||||++.||+|+ || .+
T Consensus 79 -~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG--tVGGav~mNaGa-----yGg~i 147 (307)
T PRK13906 79 -IRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG--SIGGAVYMNAGA-----YGGEV 147 (307)
T ss_pred -cceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCc--cHhHHHHhhCCc-----chhhh
Confidence 24899999999998 6653 589999999999999999999996 332235554 599999999988 75 79
Q ss_pred cceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccC
Q 014408 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (425)
Q Consensus 237 ~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~ 292 (425)
+|+|+++++|++||++++..+. ....+|.-..+ . ..--||++++|++.|.
T Consensus 148 ~D~l~~v~vv~~~G~~~~~~~~--e~~f~YR~S~~-~---~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 148 KDCIDYALCVNEQGSLIKLTTK--ELELDYRNSII-Q---KEHLVVLEAAFTLAPG 197 (307)
T ss_pred hhheeEEEEEeCCCCEEEEEHH--HccCcCCcccC-C---CCCEEEEEEEEEECCC
Confidence 9999999999999999998765 23344442221 1 1125899999999873
No 21
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=4.1e-22 Score=196.89 Aligned_cols=190 Identities=21% Similarity=0.321 Sum_probs=155.9
Q ss_pred HHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcccc
Q 014408 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (425)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~ 159 (425)
..+++.|.+..+. +. ..+++..|+ +.++++.+++++.|+|++|+++++++|++ ++|+.+.|+|||+...+.+.
T Consensus 3 ~~~~~~~~~~~~~--~~-~~~~L~~~t---t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~ 75 (297)
T PRK14653 3 RKIIETLLKYGND--VF-INEEMKCHV---SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM 75 (297)
T ss_pred hHHHHHHHHhcCe--ec-cCCcccccC---EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc
Confidence 4566777666552 44 346788887 56899999999999999999999999999 99999999999998887764
Q ss_pred CCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-cc
Q 014408 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LH 237 (425)
Q Consensus 160 ~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~ 237 (425)
+++||.+.+|+++ +++. ..++|+||+.+.+|..++.++|+. +....+.+++ |||++.||||+ ||. ++
T Consensus 76 -~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~ 144 (297)
T PRK14653 76 -DFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGS--VGGAVYMNAGA-----YGWETA 144 (297)
T ss_pred -cEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchh--HHHHHHHhCcc-----Cchhhh
Confidence 4899999789998 7763 579999999999999999999995 3333334433 99999999999 888 99
Q ss_pred ceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCC
Q 014408 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (425)
Q Consensus 238 d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p 293 (425)
|+|.++++++ +|++++...+ ..++++.+...++++.+ |||+++|++.|.+
T Consensus 145 d~l~~V~~~d-~g~v~~~~~~----e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 145 ENIVEVVAYD-GKKIIRLGKN----EIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred eeEEEEEEEC-CCEEEEEchh----hccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 9999999999 7888887543 45666677777776555 9999999999863
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.88 E-value=3.5e-22 Score=196.80 Aligned_cols=167 Identities=21% Similarity=0.288 Sum_probs=133.8
Q ss_pred ccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCc
Q 014408 110 MRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (425)
Q Consensus 110 ~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv 189 (425)
+.++++.|.++++|+|++||++++++|+++++|++++|+|||+...+.. .++++|++++|+++ .+++ +.+++|+||+
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~-~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~ 82 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG-RGGVIINLGKGIDI-EDDE-GEYVHVGGGE 82 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC-cCeEEEECCCCceE-EEec-CCEEEEEcCC
Confidence 3567899999999999999999999999999999999999999876643 46899999999988 5666 5789999999
Q ss_pred cHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEecCCceeeccCCccCCCCCCC
Q 014408 190 ILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYD 267 (425)
Q Consensus 190 ~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~~~~~k~~~g~d 267 (425)
.+.+|.+++.++|+. +...++.++ ||||+++||+|+ ||. +.|.|+++++|++||++++.... ....+|.
T Consensus 83 ~~~~l~~~~~~~Gl~GlE~l~giPG--tvGGai~mNAGa-----yG~~i~d~l~~v~vv~~~G~~~~~~~~--~~~f~YR 153 (284)
T TIGR00179 83 NWHKLVKYALKNGLSGLEFLAGIPG--TVGGAVIMNAGA-----YGVEISEVLVYATILLATGKTEWLTNE--QLGFGYR 153 (284)
T ss_pred cHHHHHHHHHHCCCcccccCCCCCc--hHHHHHHHhccc-----chhehhheEEEEEEEeCCCCEEEEEHH--HccccCC
Confidence 999999999999993 222233333 599999999998 887 55689999999999999988765 2234443
Q ss_pred chhhhhcCCCCceEEEEEEEEccc
Q 014408 268 LKHLFIGSEGSLGIVTKVSIHTPP 291 (425)
Q Consensus 268 L~~~~~Gs~GtlGIIT~~tlkl~p 291 (425)
-..+ .. .. ..||++++|++.+
T Consensus 154 ~S~f-~~-~~-~~iil~a~~~l~~ 174 (284)
T TIGR00179 154 TSIF-QH-KY-VGLVLKAEFQLTL 174 (284)
T ss_pred cccc-CC-CC-cEEEEEEEEEecc
Confidence 3221 11 11 3699999999944
No 23
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.86 E-value=2.4e-21 Score=194.87 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=151.4
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccH
Q 014408 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 191 (425)
Q Consensus 112 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~ 191 (425)
+..+++.-|-+|+|++|+.++|+.|+++|..+++.|.||+..+-.+ .+|.+|++..||+++++|++..++|||+|+++
T Consensus 45 r~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c--tdg~lisl~~lnkVv~~dpe~~tvTV~aGirl 122 (518)
T KOG4730|consen 45 RSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC--TDGLLISLDKLNKVVEFDPELKTVTVQAGIRL 122 (518)
T ss_pred hhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee--ccccEEEhhhhccceeeCchhceEEeccCcCH
Confidence 3344456678899999999999999999999999999999877655 56799999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhh
Q 014408 192 ENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHL 271 (425)
Q Consensus 192 ~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~ 271 (425)
.+|++++++.|+.+|..|... -.+|||++++++||.+..-|+.......-..+..++|.++.++++ ..+++|++
T Consensus 123 rQLie~~~~~GlsL~~~~si~-e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~A 196 (518)
T KOG4730|consen 123 RQLIEELAKLGLSLPNAPSIS-EQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFNA 196 (518)
T ss_pred HHHHHHHHhcCccccCCCcee-cceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHhh
Confidence 999999999999999766554 469999999999997544344444444455555689998888765 56799999
Q ss_pred hhcCCCCceEEEEEEEEcccCCcceeEE
Q 014408 272 FIGSEGSLGIVTKVSIHTPPKLSSVNLA 299 (425)
Q Consensus 272 ~~Gs~GtlGIIT~~tlkl~p~p~~~~~~ 299 (425)
..-|.|.||||.++||++.|.-+.....
T Consensus 197 AkvSLG~LGVIs~VTl~~vp~Fk~s~t~ 224 (518)
T KOG4730|consen 197 AKVSLGVLGVISQVTLSVVPAFKRSLTY 224 (518)
T ss_pred hhhcccceeEEEEEEEEEEecceeeeEE
Confidence 9999999999999999999987654433
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=7.6e-21 Score=192.34 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=145.0
Q ss_pred HHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCC
Q 014408 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (425)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~ 179 (425)
.++..|+ +.++++.|++++.|+|++|+++++++|+++++|+.++|+|||+.-.... .+++||+++ ++++ +++.+
T Consensus 19 ~~L~~~t---t~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g-~~GvVI~l~-~~~i-~i~~~ 92 (363)
T PRK13903 19 VPLAPLT---TLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDG-FDGTVVRVA-TRGV-TVDCG 92 (363)
T ss_pred CCccccc---EeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCC-ccEEEEEeC-CCcE-EEeCC
Confidence 4677777 5688999999999999999999999999999999999999998533221 237999997 5887 67766
Q ss_pred CCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEecC-Cceeecc
Q 014408 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVIDML 256 (425)
Q Consensus 180 ~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~d-G~iv~~~ 256 (425)
+.+++|+||+.|.+|.+++.++|+. +...-+.+++ |||.+.||+|+ ||. +.|.|.++++++.+ |++++..
T Consensus 93 ~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGT--VGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~~~~~~ 165 (363)
T PRK13903 93 GGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGS--AGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGEVRWVP 165 (363)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcc--hhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCEEEEEE
Confidence 7799999999999999999999997 6555566655 99999999998 786 89999999999965 9999876
Q ss_pred CCccCCCCCCCchhhhhcC---CCCceEEEEEEEEcccCC
Q 014408 257 GTLRKDNTGYDLKHLFIGS---EGSLGIVTKVSIHTPPKL 293 (425)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs---~GtlGIIT~~tlkl~p~p 293 (425)
.. |+.+.+++| ++..+|||+++|++.|..
T Consensus 166 ~~--------el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 166 AA--------DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HH--------HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 43 677777776 234789999999999873
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=3.4e-19 Score=176.41 Aligned_cols=260 Identities=15% Similarity=0.178 Sum_probs=175.7
Q ss_pred HHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCC-CeeEEeC
Q 014408 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMN-NIITFDK 178 (425)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln-~I~~id~ 178 (425)
.++..|+ +.++++.+++++.|+|++|+++++++|+++++|+.++|+|||+...+.. .+|+||++++++ ++ ..+.
T Consensus 7 ~~L~~~t---t~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i-~~~~ 81 (295)
T PRK14649 7 EPLAPYT---SWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWEL-HEHG 81 (295)
T ss_pred Ccccccc---EeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEE-EEeC
Confidence 3566676 5688999999999999999999999999999999999999999776554 358999998754 65 4555
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccC
Q 014408 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (425)
Q Consensus 179 ~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~ 257 (425)
++.+++|+||+.|.+|.+++.++|+. +....+.++ ||||++.||+|.. ++.+.|+|.++++++.+|++++...
T Consensus 82 ~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG--TvGGa~~mNaGay----g~ei~d~l~~V~~~~~~g~~~~~~~ 155 (295)
T PRK14649 82 DTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG--TIGGAIYGNAGCY----GGDTATVLIRAWLLLNGSECVEWSV 155 (295)
T ss_pred CcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc--chhHHHHhhcccc----ceEhheeEEEEEEEeCCCCEEEEeH
Confidence 55589999999999999999999998 777778877 6999999999983 3469999999999999999998765
Q ss_pred CccCCCCCCCchhhhhcCCCC----ceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHc-CCCceE-EEeeC
Q 014408 258 TLRKDNTGYDLKHLFIGSEGS----LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKL-GEILSA-FEFLD 331 (425)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~Gt----lGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~p~a-~E~~d 331 (425)
. ....||.-.-+.....+. --||++++|++.|..+ ..+.+.++.+.+.|+.. +..|++ .-|-+
T Consensus 156 ~--el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~~---------~~i~~~~~~~~~~R~~kqP~~~saGS~FkN 224 (295)
T PRK14649 156 H--DFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDDP---------TALAARMEAIAAERKQKTPAGSSCGSVFKN 224 (295)
T ss_pred H--HcCcccceeecccccccccccCCeEEEEEEEEECCCCH---------HHHHHHHHHHHHHHHHcCcCCCCeEEEEeC
Confidence 4 222333321111100011 1389999999988643 12334445555555332 223544 33333
Q ss_pred H---HHHHHHHHh-hcCCCC---CCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014408 332 N---QSMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (425)
Q Consensus 332 ~---~~~~~~~~~-~~~~~~---~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~ 383 (425)
. .+=.++.+. +++.+. .+.+ ..+-.+|-..+.+..++.+.++.+.+.+.+
T Consensus 225 P~~~~Ag~LIe~~GlKG~~~G~a~vS~--kHanfivN~g~Ata~di~~Li~~v~~~V~~ 281 (295)
T PRK14649 225 PPGDSAGRLIEAAGLKGTRIGDAEIAT--RHANYIINLGGARAADILRLIDLARTRVLA 281 (295)
T ss_pred CCcccHHHHHHHcCCCCCcccCEEEcc--ccCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3 233444432 112211 1111 234456777766665555544444444443
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=1.3e-18 Score=171.92 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=177.3
Q ss_pred ceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCe
Q 014408 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (425)
Q Consensus 94 ~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I 173 (425)
++.....++..|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.-.+.+..+++||.+.+|+.+
T Consensus 13 ~~~~~~~~L~~~t---t~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i 89 (302)
T PRK14650 13 NIKPQTKNLANYT---TYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNKI 89 (302)
T ss_pred CCCCCCccccccc---eeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEECCcCcE
Confidence 4555556788887 5689999999999999999999999999999999999999998655443234688888679988
Q ss_pred eEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEecCCc
Q 014408 174 ITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGD 251 (425)
Q Consensus 174 ~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~ 251 (425)
+++. ..++|+||+.|.+|..++.++|+. +....+.+|+ |||++.||+|. ||. +.|.+.++++++.+|+
T Consensus 90 -~~~~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g~ 159 (302)
T PRK14650 90 -EIHD--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGT--LGGAIWMNARC-----FGNEISEILDKITFIDEKGK 159 (302)
T ss_pred -EEeC--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcc--hhHHHHhhCCc-----cccchheeEEEEEEEECCCC
Confidence 6653 469999999999999999999997 6666666665 99999999998 785 9999999999999999
Q ss_pred eeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCC--CceE-EE
Q 014408 252 VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGE--ILSA-FE 328 (425)
Q Consensus 252 iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~a-~E 328 (425)
+.+.... ....+|.-..+ . ..-.||++++|++.|.++. ++.+.++.+...|+...+ .|++ .=
T Consensus 160 ~~~~~~~--e~~f~YR~S~f-~---~~~~iIl~a~f~L~~~~~~---------~i~~~~~~~~~~R~~kqP~~~psaGS~ 224 (302)
T PRK14650 160 TICKKFK--KEEFKYKISPF-Q---NKNTFILKATLNLKKGNKK---------HIEEIMKQNKQIRINKGHYLFPSSGST 224 (302)
T ss_pred EEEEEHH--HcCcccccccC-C---CCCEEEEEEEEEEcCCCHH---------HHHHHHHHHHHHHhcCCcCCCCCcccc
Confidence 9887654 23344433221 1 1125999999999986432 234445555555543221 1332 22
Q ss_pred eeCH-----HHHHHHHHh-hcCCCC---CCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014408 329 FLDN-----QSMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (425)
Q Consensus 329 ~~d~-----~~~~~~~~~-~~~~~~---~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~ 383 (425)
|-+. .+=.++.+. +.+.+. .+.+ ..+-.+|-..+.+.+++.+.++.+.+.+.+
T Consensus 225 FKNP~~~~~~Ag~LIe~aGlKG~riG~A~VS~--kHanfIVN~G~Ata~Dil~Li~~v~~~V~~ 286 (302)
T PRK14650 225 FKNNKAFLKPTGQIIEECKLKGLSIGGATVSH--YHGNFIININNATSKDIKTLIEKVKTEVQI 286 (302)
T ss_pred eECCCCCccchHHHHHHcCCCCCccCCEEEcc--ccccEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 2222 122444432 112221 1111 234456777766665555544444444443
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=9.2e-18 Score=163.81 Aligned_cols=253 Identities=23% Similarity=0.309 Sum_probs=176.3
Q ss_pred HHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCC
Q 014408 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (425)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~ 179 (425)
..+..|+ +.++++.++.++.|++.+|+.+++++|.+.++|+.+.|+|||+.-.+-. -++++|.+.+++.+ +++.+
T Consensus 7 ~~L~~~t---tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g-~~gvvi~~~~~~~~-~~~~~ 81 (291)
T COG0812 7 VPLKRYT---TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGG-IGGVVIKLGKLNFI-EIEGD 81 (291)
T ss_pred Cccccce---eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCC-CceEEEEcccccce-eeecc
Confidence 3466777 5688999999999999999999999999999999999999997544333 35889999988887 77777
Q ss_pred CCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEecCCceeeccC
Q 014408 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLG 257 (425)
Q Consensus 180 ~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~~ 257 (425)
+..+++++|+.|.+|.+++.++|+. |....|.+|+ |||.+.||+|. ||. ++|.+.++++++.+|++.+...
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGs--vGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~~~~l~~ 154 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGS--VGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGEVRWLSA 154 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcc--cchhhhccCcc-----cccchheeEEEEEEEcCCCCEEEEEH
Confidence 7799999999999999999999997 6666677765 99999999998 886 9999999999999999999876
Q ss_pred CccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHc---C--CCceEEEee-C
Q 014408 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKL---G--EILSAFEFL-D 331 (425)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~---~--~~p~a~E~~-d 331 (425)
.. ...+|.-.- . .....||++++|+|.|- . .++..+.+.++++.. . ..|++==++ +
T Consensus 155 ~e--l~f~YR~S~--f--~~~~~vvl~v~f~L~~~-~-----------~~~I~~~~~~ir~~R~~~qP~~~ps~GS~FKN 216 (291)
T COG0812 155 EE--LGFGYRTSP--F--KKEYLVVLSVEFKLTKG-D-----------PEDILAAMCAIRRRRELKQPIDLPSAGSFFKN 216 (291)
T ss_pred HH--hCcccccCc--C--CCCCEEEEEEEEEeCCC-C-----------HHHHHHHHHHHHHhhccCCCCcCCCCCccccC
Confidence 52 223332211 1 11228999999999985 2 344455555554322 1 113221111 1
Q ss_pred H---HHHHHHHHh-hcCCCC---CCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhhC
Q 014408 332 N---QSMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEG 384 (425)
Q Consensus 332 ~---~~~~~~~~~-~~~~~~---~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~ 384 (425)
. .+=.++.+. +++... .+.+ ..+-.+|-..+.+...+...++.+.+.+.+.
T Consensus 217 P~~~~Ag~LIe~aGLKG~~iGgA~vs~--kHanflIN~g~ATa~Dv~~Li~~Vr~~V~e~ 274 (291)
T COG0812 217 PVGDFAGWLIEEAGLKGYRIGGAQVSE--KHANFLINTGNATAKDVLDLIEHVRQRVLEK 274 (291)
T ss_pred CCcchHHHHHHHcCCCCCccCCEEech--hhCcEEEECCCCcHHHHHHHHHHHHHHHHHh
Confidence 1 133344332 111111 1111 3456778888777665555445455555443
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.75 E-value=1.4e-17 Score=166.88 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=139.3
Q ss_pred HHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEe-C
Q 014408 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD-K 178 (425)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id-~ 178 (425)
.++..|+ +.++++.+++++.|+|++|+++++++|+++++|+.+.|+|||+.-.. . ..|+||.+ +++++ +++ .
T Consensus 7 ~~L~~~t---t~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~-~~~~~ 79 (334)
T PRK00046 7 HSLKPLN---TFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGI-EVLSE 79 (334)
T ss_pred Ccccccc---eeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCce-EEEec
Confidence 3566676 56889999999999999999999999999999999999999987766 4 56888877 58888 663 2
Q ss_pred CC--CEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEecC-Ccee
Q 014408 179 GS--GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVI 253 (425)
Q Consensus 179 ~~--~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~d-G~iv 253 (425)
++ ..++|+||+.|.+|.+++.++|+. +...-|.+|+ |||++.||+|. ||. +.|.+.++++++.+ |++.
T Consensus 80 ~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~~~ 152 (334)
T PRK00046 80 DDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGT--VGAAPIQNIGA-----YGVELKDVCDYVEALDLATGEFV 152 (334)
T ss_pred CCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcc--hhHHHHhcCCc-----CcccHheeEEEEEEEECCCCcEE
Confidence 22 279999999999999999999997 6655666655 99999999998 775 99999999999987 9998
Q ss_pred eccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccC
Q 014408 254 DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (425)
Q Consensus 254 ~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~ 292 (425)
+..... ...+|.-..+ ....-.--||++++|+|.|-
T Consensus 153 ~~~~~e--~~f~YR~S~f-~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 153 RLSAAE--CRFGYRDSIF-KHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEHHH--cCcccccccC-CCCCcCCEEEEEEEEEecCC
Confidence 876552 2334432221 11000125899999999985
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=3.8e-17 Score=163.79 Aligned_cols=142 Identities=15% Similarity=0.295 Sum_probs=119.0
Q ss_pred ceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCe
Q 014408 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (425)
Q Consensus 94 ~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I 173 (425)
.++....++..|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+...+.+ ..|+||.+.+|+++
T Consensus 10 ~~~~~~~~La~~t---T~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g-~~G~VI~l~~~~~i 85 (354)
T PRK14648 10 RITRRNVPLAERC---SFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEG-VPGLMLSLRRFRSL 85 (354)
T ss_pred eeeecCCCccccc---eeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCC-ccEEEEEeCCcCce
Confidence 3444456777787 5789999999999999999999999999999999999999998665544 34889988779887
Q ss_pred eEE---eCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEe
Q 014408 174 ITF---DKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVL 247 (425)
Q Consensus 174 ~~i---d~~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl 247 (425)
++ +.+...++|++|+.|.+|.+++.++|+. +....+.+|+ |||++.||+|. ||. +.|.+.++++++
T Consensus 86 -~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGT--VGGAv~mNAGA-----yG~ei~d~l~~V~v~d 156 (354)
T PRK14648 86 -HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGS--VGGAAYMNARC-----YGRAIADCFHSARTLV 156 (354)
T ss_pred -EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcc--hhhHhhhcCCc-----cceEhhheEEEEEEEe
Confidence 54 2222479999999999999999999997 6665666665 99999999998 885 999999999993
No 30
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.62 E-value=7.2e-16 Score=152.81 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=131.1
Q ss_pred EEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEE
Q 014408 165 INMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (425)
Q Consensus 165 Idls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~le 244 (425)
|++..|..|+++|.+..+|+|||+|+++++.++|.+.|+++|+.|. .+..|+||.|..-+--..|++||...+.+.+.|
T Consensus 106 v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~E-ldDlTvGGLinG~Gies~ShkyGlfq~~~~aYE 184 (543)
T KOG1262|consen 106 VPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPE-LDDLTVGGLINGVGIESSSHKYGLFQHICTAYE 184 (543)
T ss_pred CCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecc-cccceecceeeecccccccchhhhHHhhhheeE
Confidence 4555678899999999999999999999999999999999998886 467899999976666667899999999999999
Q ss_pred EEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 245 vVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
||++||+++++.+ ++...||+-++-.|+||+|....+++|+.|.-+.....++....+++..+-+.++
T Consensus 185 vVladGelv~~t~----dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~ 252 (543)
T KOG1262|consen 185 VVLADGELVRVTP----DNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITEL 252 (543)
T ss_pred EEecCCeEEEecC----CcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhh
Confidence 9999999999864 4567799999999999999999999999999999999999999988877766554
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=1.3e-14 Score=141.67 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=124.9
Q ss_pred HHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCC-CCCeeEEeC
Q 014408 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 178 (425)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~-ln~I~~id~ 178 (425)
.++..|+ +.++++.+++++ |+|.+|+.+++ ++|+.+.|+|||+.-.+-. .+++||.+.+ ++.+ +++
T Consensus 7 ~~L~~~t---t~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g-~~g~vI~l~~~~~~~-~~~- 73 (273)
T PRK14651 7 VPLARYT---TLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAG-VPERVIRLGGEFAEW-DLD- 73 (273)
T ss_pred Ccccccc---EeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCC-cceEEEEECCcceeE-eEC-
Confidence 3566676 568899999999 99999999988 5899999999998655433 2478887765 5655 443
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEecCCceeecc
Q 014408 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (425)
Q Consensus 179 ~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~ 256 (425)
+ +|+||+.|.+|.+++.++|+. +...-+.+++ |||++.||+|. ||. +.|.+.++++++ +|++.+..
T Consensus 74 -~---~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~~~~~~ 141 (273)
T PRK14651 74 -G---WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQ--VGGAVKMNAGT-----RFGEMADALHTVEIVH-DGGFHQYS 141 (273)
T ss_pred -C---EEECCCcHHHHHHHHHHCCCcchhhhcCCCcc--hhhHHHhhCCc-----cccChheeEEEEEEEE-CCCEEEEE
Confidence 2 699999999999999999997 6665666655 99999999998 785 999999999997 89999876
Q ss_pred CCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccC
Q 014408 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (425)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~ 292 (425)
... ...+|.-..+ . . -.||++++|++.|.
T Consensus 142 ~~e--~~f~YR~S~~-~---~-~~iIl~a~f~l~~~ 170 (273)
T PRK14651 142 PDE--LGFGYRHSGL-P---P-GHVVTRVRLKLRPS 170 (273)
T ss_pred HHH--ccccccccCC-C---C-CEEEEEEEEEECCC
Confidence 552 2344432221 1 1 25899999999885
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.40 E-value=1.1e-12 Score=127.15 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=118.1
Q ss_pred hHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeC
Q 014408 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK 178 (425)
Q Consensus 99 ~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~ 178 (425)
..+++.|+ +.++++.+++++.|++.+ + ++|+.+.|+|||+.-.+.. .++++ -.++++.+ +++.
T Consensus 4 ~~~L~~~t---t~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g-~~~vv-~~~~~~~~-~~~~ 66 (257)
T PRK13904 4 IIDFSKYS---SVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNP-KNLAI-LGKNFDYI-KIDG 66 (257)
T ss_pred CcchhhcC---ceeECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCC-ccEEE-EccCcCeE-EEeC
Confidence 35677777 568999999999999887 5 8999999999998665543 33444 34568887 6654
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEecCCceeecc
Q 014408 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (425)
Q Consensus 179 ~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~ 256 (425)
..++|+||+.+.+|.+++.++|+. +....+.+++ |||++.||+|. ||. +.|.|.++++++ |+ ..
T Consensus 67 --~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGt--VGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~~---~~ 132 (257)
T PRK13904 67 --ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGT--LGGLVKMNAGL-----KEYEISNNLESICTNG--GW---IE 132 (257)
T ss_pred --CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCcc--HHHHHHhcCCc-----CccchheeEEEEEEEe--eE---Ee
Confidence 479999999999999999999997 6666666665 99999999998 775 999999999997 42 22
Q ss_pred CCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCc
Q 014408 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (425)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~ 294 (425)
++ ....+|.-..+ . .||++++|++.|.++
T Consensus 133 ~~--e~~f~YR~S~~----~---~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 133 KE--DIGFGYRSSGI----N---GVILEARFKKTHGFD 161 (257)
T ss_pred HH--HCcccccCcCC----C---cEEEEEEEEECCCCH
Confidence 22 12233432211 1 399999999998643
No 33
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=98.78 E-value=3.5e-09 Score=100.46 Aligned_cols=115 Identities=25% Similarity=0.269 Sum_probs=89.9
Q ss_pred CCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHHHH
Q 014408 292 KLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDR 371 (425)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~ 371 (425)
+|+...+.++.|++++++.+++.++++. +..|+++|+||+..++++.++.. . +.+.. ..+++++|++|++++.+.
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~-g~~p~a~el~d~~~~~~~~~~~~-~--~~~~~-~~~~llv~~~g~~~~~~~ 75 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS-GIIPSAIELLDSAALKLALEHWG-E--PLPPE-GGAVLLVEFEGSDEEAVE 75 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH-CSSCCECCCCHHHHHHHHHHSEE-E--TSSTT-TSEEEEEECCCHHHCCHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc-CCCceEEeeeCHHHHHHHHhhcC-C--CccCC-cccEEEEEECCCcHHHHH
Confidence 4788888999999999999999988876 88999999999999999987642 2 23323 568999999999866555
Q ss_pred HHHHHHHHHHhhCCCcceEEEeCCHHHHHHHHHHhccCcc
Q 014408 372 EKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNF 411 (425)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lw~~R~~~~~ 411 (425)
+.++..+..++......+.+++.++++.+++|+.|+.+.+
T Consensus 76 ~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~ 115 (248)
T PF02913_consen 76 EQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMP 115 (248)
T ss_dssp HHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcc
Confidence 5555234445555545678999999999999999998877
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=97.59 E-value=0.00011 Score=71.71 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=90.7
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHH
Q 014408 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL 198 (425)
Q Consensus 119 ~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l 198 (425)
-+..|+|.+|..++++- ++-...+.+|||.+.-........++||++++ ....+..+++.+++++++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 47889999999998863 43235678999998322111134689999986 555666677889999999999998753
Q ss_pred HhC-CC-----CcccCCCCcCcceeccccccccCcCCccccccccc--eEeEEEEEecCCceeeccCCccCCCCCCCchh
Q 014408 199 DDH-GF-----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHG--NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKH 270 (425)
Q Consensus 199 ~~~-Gl-----~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d--~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~ 270 (425)
.-. .+ .+. +|...+.+|+||+++++.- .+.+.- ..++.+|++.+|+.+ .+..
T Consensus 80 ~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p------~sD~~p~LlAldA~v~l~~~r~v-------------pl~~ 139 (258)
T PRK09799 80 FIPAALREALGFVY-SRHLRNQSTIGGEIAARQE------ESVLLPVLLALDAELVFGNGETL-------------SIED 139 (258)
T ss_pred ccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCc------cHHHHHHHHHcCCEEEEecCcEE-------------eHHH
Confidence 211 11 122 4667788999999986532 121110 233444555444322 3345
Q ss_pred hhhcCCCCceEEEEEEEE
Q 014408 271 LFIGSEGSLGIVTKVSIH 288 (425)
Q Consensus 271 ~~~Gs~GtlGIIT~~tlk 288 (425)
++.|..+ .|||++.+-
T Consensus 140 f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 140 YLACPCD--RLLTEIIIP 155 (258)
T ss_pred hcCCCCC--cEEEEEEcC
Confidence 5555443 589998774
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.46 E-value=0.00011 Score=67.33 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=66.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcc--ccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHH
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~--~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~ 195 (425)
.-+++|+|.+|+.++++ .++ ...+.+|||.+...-. ......+||++++..+..+..+++.++++|++++.++.
T Consensus 3 ~~~~~P~sl~ea~~ll~---~~~-~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA---KGP-DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELE 78 (171)
T ss_dssp -EEEE-SSHHHHHHHHH---HGT-TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHH
T ss_pred eEEEccCCHHHHHHHHh---cCC-CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHh
Confidence 45889999999999998 222 4677899998631110 01235899999876655556567889999999999999
Q ss_pred HH---------HHhCCCCcccCCCCcCcceecccccccc
Q 014408 196 SF---------LDDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (425)
Q Consensus 196 ~~---------l~~~Gl~lp~~pgs~~~~tvGG~va~na 225 (425)
+. |.++-..+. +|...+.+|+||++++..
T Consensus 79 ~~~~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 79 ESPLIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTB
T ss_pred hcchhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccCc
Confidence 86 222212232 455678899999996543
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=97.39 E-value=0.0003 Score=68.73 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=69.3
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHH--
Q 014408 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 197 (425)
Q Consensus 120 Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~-- 197 (425)
+++|+|.+|..++++- ++-.-.+.+|||.+.-........++||++++ .+..+..+++.++++|++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 6789999999998763 32224567999998432211123578999886 55556666678999999999998753
Q ss_pred ----HHhCCCCcccCCCCcCcceecccccccc
Q 014408 198 ----LDDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (425)
Q Consensus 198 ----l~~~Gl~lp~~pgs~~~~tvGG~va~na 225 (425)
|.+.=..+. +|...+.+|+||++++..
T Consensus 80 ~~~~L~~aa~~va-~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 80 TPAALKEALGFVY-SRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred hHHHHHHHHHHhC-CHHHhccccHHHHhhcCC
Confidence 211111122 567788899999998643
No 37
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.95 E-value=0.0016 Score=68.89 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=72.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc--cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHH
Q 014408 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (425)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~--~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L 194 (425)
..-+++|+|.+|+.++++. +. ...+.+|||.+.-.. -......+||++++..+..+..+++.++++|++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999999873 32 346789999973211 11123689999987655555556778999999999999
Q ss_pred HHHHHhC--CC-----CcccCCCCcCcceeccccccc
Q 014408 195 VSFLDDH--GF-----IMPLDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 195 ~~~l~~~--Gl-----~lp~~pgs~~~~tvGG~va~n 224 (425)
...+.++ .+ .+. .|...+.+||||++++.
T Consensus 268 ~~~l~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFA-SLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhC-CHHHcCceecccccccC
Confidence 8766543 11 122 46677889999999864
No 38
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=96.90 E-value=0.0015 Score=64.86 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=68.3
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc-c-ccCCeEEEEeCCCCCeeEEe-CCCCEEEEecCccHHHHH
Q 014408 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFD-KGSGVLVCEAGCILENLV 195 (425)
Q Consensus 119 ~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~-~-~~~~gvvIdls~ln~I~~id-~~~~~v~veaGv~~~~L~ 195 (425)
-++.|+|.+|..++++. +. ...+.+|||.+.-.. . ......+||++++.....|. .+++.+++++++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 58889999999998874 22 246789999973110 0 11336899999866554555 345679999999999998
Q ss_pred H--HHHhCC-------CCcccCCCCcCcceeccccccc
Q 014408 196 S--FLDDHG-------FIMPLDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 196 ~--~l~~~G-------l~lp~~pgs~~~~tvGG~va~n 224 (425)
+ .+.++- ..+. +|...+.+|+||++++.
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia-~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIG-GPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhC-CHHHhcceecccccccC
Confidence 6 222110 1122 56677889999999764
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=96.71 E-value=0.0016 Score=65.58 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=68.1
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcc--ccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHH
Q 014408 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (425)
Q Consensus 119 ~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~--~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~ 196 (425)
-++.|+|.+|..++++- ++ .-.+.+|||.+.-... ......+||+.++..+..|..+++.++++++|++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 58899999999998874 22 2357899998622111 112368899998655444555567899999999999965
Q ss_pred H--HHh-------CCCCcccCCCCcCcceeccccccc
Q 014408 197 F--LDD-------HGFIMPLDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 197 ~--l~~-------~Gl~lp~~pgs~~~~tvGG~va~n 224 (425)
. +.+ .=..+. +|...+.+|+||++++.
T Consensus 82 ~~~i~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 82 DALVRTRWPALAQAARAVA-GPTHRAAATLGGNLCLD 117 (321)
T ss_pred ChhhHhHhHHHHHHHHHhC-CHHHhCceecHHhhhcc
Confidence 3 111 101122 56677889999999864
No 40
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=96.55 E-value=0.0016 Score=63.84 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccc---cCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHH--
Q 014408 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP---VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 197 (425)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~---~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~-- 197 (425)
|+|.+|+.++++.. + ...+.+|||.+.-.-.. .....+||++++..+..++.+++.+++++++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78999999988742 2 34678999987322111 124689999987776667777789999999999999742
Q ss_pred HHhC--CC----CcccCCCCcCcceeccccccc
Q 014408 198 LDDH--GF----IMPLDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 198 l~~~--Gl----~lp~~pgs~~~~tvGG~va~n 224 (425)
+.++ .+ ..--+|...+.+|+||+++++
T Consensus 77 i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 1111 00 011256677889999999764
No 41
>PLN02906 xanthine dehydrogenase
Probab=95.42 E-value=0.018 Score=68.24 Aligned_cols=103 Identities=15% Similarity=0.073 Sum_probs=72.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc--cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHH
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~--~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~ 195 (425)
.-++.|+|.+|+.++++.. . .-.+.+|||.+.-.. .-....++||++++..+..|..++..++++|++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4588999999999987742 2 235678999983211 011336899999866655566667789999999999999
Q ss_pred HHHHhCCC--------Ccc---------cCCCCcCcceeccccccc
Q 014408 196 SFLDDHGF--------IMP---------LDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 196 ~~l~~~Gl--------~lp---------~~pgs~~~~tvGG~va~n 224 (425)
+.|.+.=. .+| -.|...+.+||||+|++.
T Consensus 305 ~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a 350 (1319)
T PLN02906 305 NLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTA 350 (1319)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccC
Confidence 87544310 011 246677889999999864
No 42
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=95.37 E-value=0.028 Score=66.62 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=72.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc-c-ccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHH
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~-~-~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~ 195 (425)
.-++.|.|.+|+.++++.. . .-.+.+|||.+.-.- . ......+||++++..+..+..+++.++++|++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4688999999999988742 2 245678999983211 0 11225799999876665666667789999999999999
Q ss_pred HHHHhC---------C----C-----CcccCCCCcCcceecccccccc
Q 014408 196 SFLDDH---------G----F-----IMPLDLGAKGSCQIGGNVSTNA 225 (425)
Q Consensus 196 ~~l~~~---------G----l-----~lp~~pgs~~~~tvGG~va~na 225 (425)
+.|.+. . + .+. .|...+.+||||+|++..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ia-s~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLA-GSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhC-ChhhcccccchhhcccCC
Confidence 875433 1 0 122 456778899999998643
No 43
>PLN00192 aldehyde oxidase
Probab=95.27 E-value=0.031 Score=66.37 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=73.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHH
Q 014408 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (425)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~ 196 (425)
..-++.|.|.+|+.++++.....+-.-.+..|||.+.-.-......++||++++..+..+..+++.++++|++++.++..
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 34588999999999998742100122556788999732111112368999998666555666677899999999999998
Q ss_pred HHHhCCC---Ccc---------cCCCCcCcceeccccccc
Q 014408 197 FLDDHGF---IMP---------LDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 197 ~l~~~Gl---~lp---------~~pgs~~~~tvGG~va~n 224 (425)
.+...-. .+| -.|...+.+||||+|++.
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 7655421 111 145667889999999864
No 44
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=94.50 E-value=0.088 Score=52.19 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=69.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcc--ccCCeEEEEeCCCCC-eeEEeCCCCEEEEecCccHHH
Q 014408 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNN-IITFDKGSGVLVCEAGCILEN 193 (425)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~--~~~~gvvIdls~ln~-I~~id~~~~~v~veaGv~~~~ 193 (425)
+--+.+|.|.+|...+++ +.+ -..+.+|||++.-..- -....-+||++++.. ......+++.++++|-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 346889999999888887 343 4567799999852111 013356889988742 213344567799999999999
Q ss_pred HHHHHHhCCC--------CcccCCCCcCcceecccccccc
Q 014408 194 LVSFLDDHGF--------IMPLDLGAKGSCQIGGNVSTNA 225 (425)
Q Consensus 194 L~~~l~~~Gl--------~lp~~pgs~~~~tvGG~va~na 225 (425)
+.+--.-+.. ..--+|...+.+||||+++.+.
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~ 118 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNAD 118 (284)
T ss_pred HHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCC
Confidence 9743211211 1123678888999999976544
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=93.52 E-value=0.18 Score=51.30 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=81.0
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcccc---CCeEEEEeCCCCCeeEEeCCCCEEEEecCc
Q 014408 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (425)
Q Consensus 113 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~---~~gvvIdls~ln~I~~id~~~~~v~veaGv 189 (425)
+++-.+.++.|.+.+|..+++.. +-+ .++..|+|.+ |--+.. +-..+|-..++..+..|+...+.+++++|+
T Consensus 199 ~~~~~~r~~~P~~l~D~a~l~aa--~P~--AtivAGsTDv-gLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgv 273 (493)
T COG4630 199 VGSGDDRFIVPATLADFADLLAA--HPG--ATIVAGSTDV-GLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGV 273 (493)
T ss_pred ecCCCceeEeeccHHHHHHHHhh--CCC--CEEEecCcch-hhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCc
Confidence 34445678899999999999863 233 4556677765 111110 113456667766666677788999999999
Q ss_pred cHHHHHHHHHhCCCCc---ccCC---CCcCcceeccccccccCcCCcccccccc--ceEeEEEEEecCCcee
Q 014408 190 ILENLVSFLDDHGFIM---PLDL---GAKGSCQIGGNVSTNAGGLRLVRYGSLH--GNVLGLEAVLANGDVI 253 (425)
Q Consensus 190 ~~~~L~~~l~~~Gl~l---p~~p---gs~~~~tvGG~va~nagG~~~~~yG~~~--d~V~~levVl~dG~iv 253 (425)
++.+...+|..+=-.| ..-. ...+..|+||+|++++- -|..- =..++..+++-.|+-.
T Consensus 274 t~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~ 339 (493)
T COG4630 274 TYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGR 339 (493)
T ss_pred cHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCc
Confidence 9999999997652111 0011 12466789999987531 12211 1356677777665433
No 46
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=72.28 E-value=8 Score=38.18 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=32.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhh
Q 014408 298 LAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYL 342 (425)
Q Consensus 298 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~ 342 (425)
++++..+|.+++.+.=+.+.......|-+.|||.+.+.+++.+|.
T Consensus 1 VFYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~~YG 45 (291)
T PF09330_consen 1 VFYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAEKYG 45 (291)
T ss_dssp EEEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH----
T ss_pred CeEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHHHhc
Confidence 467888999988887777777778889999999999999998874
No 47
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=55.31 E-value=20 Score=41.86 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=67.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHH
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 197 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~ 197 (425)
.-...|.|.+|+.++.+ .........|+|...---...+-...||.++......++.++.-+++++++++.+..+.
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 34677999999999988 33345555666664211111122356787765543344445566999999999999888
Q ss_pred HHhCCC--------------CcccCCCCcCcceeccccccccCc
Q 014408 198 LDDHGF--------------IMPLDLGAKGSCQIGGNVSTNAGG 227 (425)
Q Consensus 198 l~~~Gl--------------~lp~~pgs~~~~tvGG~va~nagG 227 (425)
+.+.-- ..-..+...+.+|+||+|.+.+.+
T Consensus 291 l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~ 334 (1257)
T KOG0430|consen 291 LRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQS 334 (1257)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEeccCC
Confidence 765321 001123456788999999776654
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=37.08 E-value=98 Score=22.31 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=34.2
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|..+|. .+|.|..+.+...+.......+++.|.+.+++.+++..+.
T Consensus 13 ~~l~~~f~----~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 13 EELRDFFS----QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp HHHHHHHH----TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHH----HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 35666653 3666777776665445566778999999999999887763
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=36.40 E-value=1.2e+02 Score=22.19 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=34.4
Q ss_pred CchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 267 dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
||..+|. .+|.|.++.+...+.......+++.|.+.+++.+++...
T Consensus 14 ~l~~~f~----~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 14 DLRNFFS----RFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHCT----TSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 4555443 346689999887766556788999999999998887664
No 50
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=35.30 E-value=1.6e+02 Score=24.54 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCC
Q 014408 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHG 202 (425)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~G 202 (425)
-+++.||..+++-..+++.|+.++-+ .+ .. .+ .+|+++|++++++....|..-.+-...+...-
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~~-~g---------~~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a~~ 67 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRHP-RG---------QS-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNAEE 67 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEETT--S---------SE-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT--
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeC-CC---------CE-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcCCc
Confidence 35789999999999999999999932 22 11 33 37789999999999988877666655554443
Q ss_pred CC
Q 014408 203 FI 204 (425)
Q Consensus 203 l~ 204 (425)
+.
T Consensus 68 ~~ 69 (108)
T PF07317_consen 68 LT 69 (108)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 51
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=33.01 E-value=76 Score=27.07 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=33.4
Q ss_pred hhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcE-EEeCCC
Q 014408 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (425)
Q Consensus 105 y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~rGgG 149 (425)
|..+|. ..+.+..|++..|++|+..+.+.|.+.|++. .++-+|
T Consensus 38 ~~~~W~--~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG 81 (113)
T PRK04322 38 WLEEWL--NEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAG 81 (113)
T ss_pred HHHHHH--HCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 444563 4678999999999999999999999999885 344443
No 52
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=32.70 E-value=1.4e+02 Score=27.67 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=50.4
Q ss_pred cccccccCCCCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHH-----------HHHHHHHHH
Q 014408 69 FERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNE-----------VSQILKYCN 137 (425)
Q Consensus 69 ~~r~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~ee-----------V~~iv~~a~ 137 (425)
+.||++|+---++.++.|+ ..|.+.+..++.. + .... .+++|+.|....+ +.+.++.+.
T Consensus 3 ia~d~aF~f~y~e~~~~l~-~~G~~v~~~s~~~------~--~~l~-~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~ 72 (198)
T cd03130 3 VARDEAFNFYYPENLELLE-AAGAELVPFSPLK------D--EELP-DADGLYLGGGYPELFAEELSANQSMRESIRAFA 72 (198)
T ss_pred EEecCccccccHHHHHHHH-HCCCEEEEECCCC------C--CCCC-CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHH
Confidence 5789999999999999998 4564444433210 0 1122 2688999987533 234455556
Q ss_pred hCCCcEEEeCCCCCCCCCc
Q 014408 138 SRLLAVVPQGGNTGLVGGS 156 (425)
Q Consensus 138 ~~~ipv~~rGgGt~~~g~~ 156 (425)
+.+.|+...++|--+.+..
T Consensus 73 ~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 73 ESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HcCCCEEEEcccHHHHHHH
Confidence 6789999998876654443
No 53
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=31.54 E-value=62 Score=35.11 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=27.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhC-CCcEEEe
Q 014408 114 RGSSKLLLQPRTTNEVSQILKYCNSR-LLAVVPQ 146 (425)
Q Consensus 114 ~~~p~~Vv~P~s~eeV~~iv~~a~~~-~ipv~~r 146 (425)
.|.|-..++|.|.++|.+++++|+++ ..|++.+
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 35677899999999999999999987 5677764
No 54
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=30.08 E-value=73 Score=28.29 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=27.7
Q ss_pred CCCc-cEEEEcCCHHHHHHHHHHHHhCCCcEEEe
Q 014408 114 RGSS-KLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (425)
Q Consensus 114 ~~~p-~~Vv~P~s~eeV~~iv~~a~~~~ipv~~r 146 (425)
+..| ..|+.|.+.+|+..++++|-+.+-|+.+|
T Consensus 120 ~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 120 RAIPNMTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3444 46899999999999999999887798876
No 55
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=29.12 E-value=4e+02 Score=28.09 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCC-Ccee------cChHH-HHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCC
Q 014408 81 EDVSYFKELLGE-KSVI------QDEDV-LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGN 149 (425)
Q Consensus 81 ~~l~~L~~ilg~-~~v~------~~~~~-l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgG 149 (425)
..++.++..++. ..+. .++++ ....-..+ .........++.|+.+|-..++-+.|+++|+++..|+.|
T Consensus 218 ~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~~l-~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 218 AELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQAL-KKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred HHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHHHH-HhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 345667777775 2222 22333 11121122 223335678999999999999999999999999999987
No 56
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=27.16 E-value=57 Score=32.45 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
=|.+|+++++++|+++||-|+|- .=||.
T Consensus 69 yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 47899999999999999999985 34554
No 57
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.88 E-value=58 Score=32.98 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
=|.+|+++++++|+++||.|+|- .-||.
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 38999999999999999999995 34554
No 58
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=26.77 E-value=3e+02 Score=30.45 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=70.7
Q ss_pred cCC-HHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCee-----EEeCCCC---EEEEecCc----
Q 014408 123 PRT-TNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNII-----TFDKGSG---VLVCEAGC---- 189 (425)
Q Consensus 123 P~s-~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~-----~id~~~~---~v~veaGv---- 189 (425)
|.+ .+||.+-++.|.+.+-++...-+--|++.-.+| ..|+||-| |.-++ -.++++. +.-|=|--
T Consensus 308 p~~~~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvP--sDVIIDAS-MPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~ 384 (741)
T TIGR00178 308 PAAQQEEIEADLQAVYAQRPELAMVNSDKGITNLHVP--SDVIVDAS-MPAMIRASGKMWGPDGKLKDTKAVIPDRCYAG 384 (741)
T ss_pred ChhhHHHHHHHHHHHHhhCCCEEEeccCCCccccCCC--cCeEEecC-cHHHHhccCCccCCCCCcccceeecCCccchH
Confidence 544 467999999999999888888766666555665 56899865 22211 1222221 22232322
Q ss_pred cHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccc-------cceEeEEEEEecCCceeec
Q 014408 190 ILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL-------HGNVLGLEAVLANGDVIDM 255 (425)
Q Consensus 190 ~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~-------~d~V~~levVl~dG~iv~~ 255 (425)
...+..++|.++|-+=|...|+ +.=-|..+.-|- .||+. .|- -++||+.+|+++-.
T Consensus 385 vYq~~I~~ck~nGafDp~TmGs---V~NVGLMAqKAE-----EYGSHdkTFei~~~G--~v~Vvd~~G~vl~e 447 (741)
T TIGR00178 385 VYQVVIEDCKQNGAFDPTTMGT---VPNVGLMAQKAE-----EYGSHDKTFQIPADG--VVRVVDSSGEVLLE 447 (741)
T ss_pred HHHHHHHHHHhcCCCCcccccC---CcchhHhHHHHH-----HhcCCCcceecCCCc--eEEEEeCCCCEEEE
Confidence 3667778899999664433333 222344444442 35543 222 26788899988764
No 59
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.09 E-value=61 Score=32.30 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEe
Q 014408 123 PRTTNEVSQILKYCNSRLLAVVPQ 146 (425)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~r 146 (425)
+=|.+|+.+++++|+++|+-|+|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 469999999999999999999995
No 60
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=25.25 E-value=55 Score=32.79 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 123 PRTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
.=|.+|+++++++|+++||.|+|- .-||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 348899999999999999999984 45555
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=25.04 E-value=1.5e+02 Score=22.29 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=26.4
Q ss_pred CceEEEEEE-EEcccC---CcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 278 SLGIVTKVS-IHTPPK---LSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 278 tlGIIT~~t-lkl~p~---p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|-|+++. +...+. +......++.|.+.+++.+|+..+.
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~ 58 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN 58 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 456666664 433322 2344568899999999999887753
No 62
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=24.25 E-value=1.1e+02 Score=27.79 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=28.2
Q ss_pred CCCc-cEEEEcCCHHHHHHHHHHHHh--CCCcEEEeCCC
Q 014408 114 RGSS-KLLLQPRTTNEVSQILKYCNS--RLLAVVPQGGN 149 (425)
Q Consensus 114 ~~~p-~~Vv~P~s~eeV~~iv~~a~~--~~ipv~~rGgG 149 (425)
+..| ..|+.|.+.+|+..+++++-+ .+-|+.+|-..
T Consensus 134 ~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 134 RSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp HTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred ccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 3445 458899999999999999999 67899887543
No 63
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.86 E-value=72 Score=32.07 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
=|.+|+.+++++|+++||.|+|- --||.
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 58999999999999999999985 44555
No 64
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.26 E-value=73 Score=32.51 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 125 TTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 125 s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
|.+|+++|+++|+++||.|+|- .=||.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~ 112 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHA 112 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhH
Confidence 8999999999999999999985 44555
No 65
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=23.24 E-value=5.1e+02 Score=25.57 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCHHHHHHHH-HhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc
Q 014408 78 LNSEDVSYFK-ELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (425)
Q Consensus 78 ~~~~~l~~L~-~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~ 156 (425)
+.++.++.|+ ++++...+++. ...+.. ..-+. ...+|.+|+.+.-+...+.|.+-++.=|||... .
T Consensus 117 l~~~a~~~l~~~LlP~a~vvTP-Nl~EA~------~L~g~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~-~- 183 (263)
T COG0351 117 LDEEAVEALREELLPLATVVTP-NLPEAE------ALSGL----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG-E- 183 (263)
T ss_pred cChHHHHHHHHHhhccCeEecC-CHHHHH------HHcCC----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC-C-
Confidence 5566777777 44554444433 111111 11121 267899999999999988888766655566653 1
Q ss_pred cccCCeEEEEeCCCCCe--eEEeCCCCEEEEecCccHHHHHHHHHhCCCCcc
Q 014408 157 VPVFDEVIINMGSMNNI--ITFDKGSGVLVCEAGCILENLVSFLDDHGFIMP 206 (425)
Q Consensus 157 ~~~~~gvvIdls~ln~I--~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp 206 (425)
...++.|-+.+..+ -.++..+ +=+.||++.....+-..+|+.+.
T Consensus 184 ---~~D~l~~~~~~~~f~~~ri~t~~---tHGTGCTlSaAIaa~LA~G~~l~ 229 (263)
T COG0351 184 ---AVDVLYDGGSFYTFEAPRIPTKN---THGTGCTLSAAIAANLAKGLSLE 229 (263)
T ss_pred ---ceeEEEcCCceEEEeccccCCCC---CCCccHHHHHHHHHHHHcCCCHH
Confidence 12344443311111 0122222 35899999999888888898755
No 66
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=22.88 E-value=2e+02 Score=20.31 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=25.9
Q ss_pred CceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 278 SLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 278 tlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|-|.++.+--.. ...+++.|.+.+++..++..+.
T Consensus 7 ~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~ 42 (56)
T PF13893_consen 7 KFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLN 42 (56)
T ss_dssp TTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHT
T ss_pred CcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhC
Confidence 57888888773222 4567889999999999887763
No 67
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=2.9e+02 Score=25.80 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=32.9
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEe--CCCCCC
Q 014408 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ--GGNTGL 152 (425)
Q Consensus 112 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~r--GgGt~~ 152 (425)
..-+.|+.||+.++++++.++.+.|++.|++.... .|.|-+
T Consensus 120 e~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGrTQI 162 (190)
T KOG3282|consen 120 ENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGRTQI 162 (190)
T ss_pred HHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence 35678999999999999999999999999886432 444444
No 68
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.72 E-value=97 Score=26.00 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCCc-cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCC
Q 014408 114 RGSS-KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGN 149 (425)
Q Consensus 114 ~~~p-~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgG 149 (425)
+..| ..+|.+.+-.|++.++.+|.+.|+||...+.-
T Consensus 53 RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 53 RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred hcCCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 3345 56777888899999999999999999988753
No 69
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=22.36 E-value=79 Score=32.20 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe--CCCCCC
Q 014408 125 TTNEVSQILKYCNSRLLAVVPQ--GGNTGL 152 (425)
Q Consensus 125 s~eeV~~iv~~a~~~~ipv~~r--GgGt~~ 152 (425)
|.+|+++||++|+++||-|+|- .-||..
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~ 97 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTG 97 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhH
Confidence 8999999999999999999985 446653
No 70
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=22.32 E-value=3.1e+02 Score=22.90 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHH--HHHHHHHHHhCCCcEEEeCC
Q 014408 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNE--VSQILKYCNSRLLAVVPQGG 148 (425)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~ee--V~~iv~~a~~~~ipv~~rGg 148 (425)
.+.+++-|.-......++...+.....- -.+.+.+|+.+.+..+ ..++.++|+.+++|++..+.
T Consensus 2 ~~k~l~lLglA~rAGklv~G~~~v~~ai------k~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t 67 (104)
T PRK05583 2 MNKFLNFLGLTKKAGKLLEGYNKCEEAI------KKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS 67 (104)
T ss_pred hHHHHHHHHHHHHhCCeeecHHHHHHHH------HcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC
Confidence 3445555444444456777755433332 1345778888776544 77899999999999977743
No 71
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.30 E-value=1.3e+02 Score=32.12 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=32.1
Q ss_pred HhCCCCcccCCCCcCcceeccccc-cccCcCCccccccccceEeEEEEEecCCceeeccCC
Q 014408 199 DDHGFIMPLDLGAKGSCQIGGNVS-TNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGT 258 (425)
Q Consensus 199 ~~~Gl~lp~~pgs~~~~tvGG~va-~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~ 258 (425)
..+|+.+| | |-|+|. .-|.|-.+ --+.+..|.++.+|-.||+++++...
T Consensus 279 tANGIeLP-D--------V~GaivSGtAsGDwT--LSCVRGqV~SiTFVF~DGtirTvp~~ 328 (472)
T TIGR03752 279 TANGIELP-D--------VAGAVVSGTASGDWT--LSCVRGQVRSLTFVFNDGTIRTVPRP 328 (472)
T ss_pred cccCccCC-C--------ccceEEeeeeccceE--EEEEeeeEEEEEEEEeCCeEEEecCC
Confidence 45777777 3 334443 23344211 33477899999999999999997543
No 72
>PRK14982 acyl-ACP reductase; Provisional
Probab=21.68 E-value=1.2e+02 Score=30.94 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=51.3
Q ss_pred ccccccccccCCCCHHHHHHHHHhhCCCceecChHHHHHhh---hccccccCCCccEEE--EcCCH-HHHHHHHHHHHhC
Q 014408 66 ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAAN---EDWMRKYRGSSKLLL--QPRTT-NEVSQILKYCNSR 139 (425)
Q Consensus 66 ~~~~~r~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~---~d~~~~~~~~p~~Vv--~P~s~-eeV~~iv~~a~~~ 139 (425)
+..+.|++.|....++.+.++.. +++..+-.- ...+.+. +.|.-.....|..+. .|+.. ..|.+.++.|.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~-~~p~~~~~~-~v~S~~g~~~eg~~i~~~~~pe~l~~~~~~~~~~~~~~a~~~a~~~ 91 (340)
T PRK14982 14 AQRVARELGYDEYADQDLDFWCS-APPQLVDHI-EVTSATGQTIEGKYIESCFLPEMLSNRRFKTARRKVLNAMALAQKK 91 (340)
T ss_pred hHHHHhcCCccccChHhHHHHhh-CCCeEeeeE-EEEeCCCCEEEEEEEeCCCCHHHHhccChHHHHHHHHHHHHHHHHC
Confidence 44588999999999888888765 444322111 0111111 111111122333332 23333 5666788999999
Q ss_pred CCcEEEeCCCCCCCCC
Q 014408 140 LLAVVPQGGNTGLVGG 155 (425)
Q Consensus 140 ~ipv~~rGgGt~~~g~ 155 (425)
|+.++..|+=|++.++
T Consensus 92 G~~i~~Lg~~tsiv~~ 107 (340)
T PRK14982 92 GINITALGGFSSIIFE 107 (340)
T ss_pred CCeEEEcCChHHHhcC
Confidence 9999999998887544
No 73
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.60 E-value=74 Score=31.97 Aligned_cols=27 Identities=19% Similarity=0.500 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 125 TTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 125 s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
|.+|+++++++|+++||-|+|- -=||.
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~ 108 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHS 108 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHH
Confidence 8999999999999999999884 34554
Done!