Query 014408
Match_columns 425
No_of_seqs 294 out of 2473
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pm9_A Putative oxidoreductase 100.0 6.7E-61 2.3E-65 501.1 35.0 345 77-424 12-368 (476)
2 4bby_A Alkyldihydroxyacetoneph 100.0 1.5E-51 5.3E-56 445.9 35.5 263 77-343 159-434 (658)
3 2uuu_A Alkyldihydroxyacetoneph 100.0 3.9E-49 1.3E-53 421.2 31.8 323 77-411 89-441 (584)
4 1f0x_A DLDH, D-lactate dehydro 100.0 3.1E-50 1.1E-54 427.8 22.0 259 80-341 10-321 (571)
5 1e8g_A Vanillyl-alcohol oxidas 100.0 2.3E-47 7.9E-52 406.4 27.9 321 81-410 23-402 (560)
6 1wvf_A 4-cresol dehydrogenase 100.0 6.2E-46 2.1E-50 392.2 30.4 322 81-410 19-371 (520)
7 2exr_A Cytokinin dehydrogenase 100.0 1.8E-47 6.2E-52 404.2 17.9 329 79-423 27-396 (524)
8 1w1o_A Cytokinin dehydrogenase 100.0 3.3E-45 1.1E-49 387.8 19.1 334 78-423 30-411 (534)
9 3tsh_A Pollen allergen PHL P 4 100.0 7E-37 2.4E-41 321.6 20.5 231 80-317 9-250 (500)
10 3rja_A Carbohydrate oxidase; p 100.0 6E-35 2.1E-39 304.9 22.2 219 93-318 13-238 (473)
11 2bvf_A 6-hydroxy-D-nicotine ox 100.0 1.2E-34 4.1E-39 301.6 21.1 212 98-318 20-235 (459)
12 1hsk_A UDP-N-acetylenolpyruvoy 100.0 2.5E-37 8.5E-42 308.6 0.4 267 77-383 13-299 (326)
13 2vfr_A Xylitol oxidase, aldito 100.0 1E-34 3.6E-39 298.9 16.9 213 106-337 10-223 (422)
14 3fw9_A Reticuline oxidase; BI- 100.0 2.7E-34 9.1E-39 301.3 19.8 203 106-317 35-242 (495)
15 3vte_A Tetrahydrocannabinolic 100.0 8.6E-34 2.9E-38 298.6 21.6 206 106-318 43-251 (518)
16 4feh_A Oxidoreductase DPRE1; a 100.0 7.5E-34 2.6E-38 297.0 21.0 204 105-315 32-238 (481)
17 1zr6_A Glucooligosaccharide ox 100.0 6E-34 2.1E-38 299.5 19.9 226 83-317 6-240 (503)
18 2wdx_A Putative hexose oxidase 100.0 1.7E-33 5.8E-38 297.3 21.2 204 98-304 38-258 (523)
19 2ipi_A Aclacinomycin oxidoredu 100.0 4.3E-33 1.5E-37 294.1 21.3 202 91-295 29-246 (521)
20 3pop_A GILR oxidase; FAD bindi 100.0 4E-33 1.4E-37 292.9 19.4 197 88-289 6-208 (501)
21 2y3s_A TAML; oxidoreductase; H 100.0 3.6E-32 1.2E-36 287.5 22.2 193 97-294 39-249 (530)
22 2i0k_A Oxidoreductase; MIX alp 100.0 9.6E-31 3.3E-35 278.4 17.1 201 101-312 20-240 (561)
23 3js8_A Cholesterol oxidase; ch 100.0 1.7E-30 5.8E-35 273.3 18.2 194 106-311 19-235 (540)
24 3tx1_A UDP-N-acetylenolpyruvoy 100.0 8.3E-31 2.8E-35 260.8 12.3 273 78-382 20-304 (322)
25 1uxy_A MURB, uridine diphospho 99.9 6.9E-26 2.4E-30 226.9 19.9 203 102-320 3-215 (340)
26 3i99_A UDP-N-acetylenolpyruvoy 99.9 4.3E-26 1.5E-30 229.4 17.4 204 100-320 17-230 (357)
27 2gqt_A UDP-N-acetylenolpyruvyl 99.9 1.4E-24 4.9E-29 210.6 9.9 230 101-372 10-249 (268)
28 2yvs_A Glycolate oxidase subun 99.9 4.1E-24 1.4E-28 201.7 10.7 127 175-306 2-128 (219)
29 1ffv_C CUTM, flavoprotein of c 98.6 7.9E-08 2.7E-12 93.8 8.9 155 117-292 5-177 (287)
30 2w3s_A Xanthine dehydrogenase; 98.0 4.6E-06 1.6E-10 86.4 4.9 122 115-250 175-312 (462)
31 1n62_C Carbon monoxide dehydro 97.9 1.6E-05 5.6E-10 77.3 8.1 150 117-291 5-176 (288)
32 3nvz_B Xanthine dehydrogenase/ 97.9 3.3E-05 1.1E-09 75.8 9.0 129 113-251 6-157 (305)
33 1t3q_C Quinoline 2-oxidoreduct 97.5 0.00013 4.3E-09 71.0 6.3 121 117-251 5-143 (288)
34 3hrd_C Nicotinate dehydrogenas 97.0 0.00028 9.6E-09 68.8 2.7 103 118-224 4-118 (296)
35 1rm6_B 4-hydroxybenzoyl-COA re 95.7 0.0043 1.5E-07 61.2 2.9 100 118-223 7-118 (324)
36 3unc_A Xanthine dehydrogenase/ 95.1 0.033 1.1E-06 64.5 8.1 106 115-225 231-356 (1332)
37 3zyv_A AOH1; oxidoreductase, m 86.2 0.23 7.7E-06 57.7 1.7 102 118-224 241-362 (1335)
38 1xty_A PTH, peptidyl-tRNA hydr 42.3 50 0.0017 27.1 6.1 45 103-149 43-88 (120)
39 1rzw_A Protein AF2095(GR4); be 40.0 43 0.0015 27.9 5.3 43 106-150 40-83 (123)
40 2dnh_A Bruno-like 5, RNA bindi 35.5 69 0.0024 24.4 5.7 48 266-317 30-77 (105)
41 3ulh_A THO complex subunit 4; 35.3 66 0.0022 24.7 5.6 47 266-316 44-90 (107)
42 2do4_A Squamous cell carcinoma 34.6 74 0.0025 24.1 5.7 47 266-316 32-78 (100)
43 4fxv_A ELAV-like protein 1; RN 33.0 86 0.003 24.1 5.9 64 248-316 17-81 (99)
44 2pe8_A Splicing factor 45; RRM 32.0 83 0.0028 24.7 5.7 63 267-333 29-94 (105)
45 2ywk_A Putative RNA-binding pr 31.8 68 0.0023 23.9 5.0 47 266-316 31-77 (95)
46 3ue2_A Poly(U)-binding-splicin 31.5 66 0.0023 26.1 5.1 59 277-335 47-111 (118)
47 2do0_A HnRNP M, heterogeneous 30.3 90 0.0031 24.1 5.7 48 266-317 30-77 (114)
48 3s8s_A Histone-lysine N-methyl 30.2 91 0.0031 24.6 5.7 48 266-317 21-69 (110)
49 1wn2_A Peptidyl-tRNA hydrolase 30.0 89 0.0031 25.7 5.7 42 106-149 47-89 (121)
50 1rlk_A Hypothetical protein TA 28.5 72 0.0025 26.1 4.8 38 113-150 48-86 (117)
51 1jmt_A Splicing factor U2AF 35 27.9 86 0.0029 24.5 5.1 41 277-317 49-89 (104)
52 3v4m_A Splicing factor U2AF 65 27.7 64 0.0022 25.4 4.3 59 277-335 37-99 (105)
53 2d9p_A Polyadenylate-binding p 26.5 1.2E+02 0.0041 23.0 5.7 47 266-317 30-76 (103)
54 1yht_A DSPB; beta barrel, hydr 26.0 40 0.0014 33.1 3.3 28 124-151 92-121 (367)
55 2zv3_A PTH, peptidyl-tRNA hydr 25.9 71 0.0024 26.0 4.3 37 113-149 46-83 (115)
56 2dnr_A Synaptojanin-1; RRM dom 24.8 57 0.002 25.7 3.3 40 268-314 28-67 (91)
57 1x5o_A RNA binding motif, sing 24.5 1.4E+02 0.0047 23.1 5.8 47 266-316 40-86 (114)
58 2cqc_A Arginine/serine-rich sp 24.4 1.4E+02 0.0048 22.0 5.6 47 266-316 30-77 (95)
59 4f25_A Polyadenylate-binding p 23.6 1.1E+02 0.0036 24.1 5.0 49 264-317 18-66 (115)
60 2cpz_A CUG triplet repeat RNA- 23.3 71 0.0024 24.9 3.8 49 264-316 38-87 (115)
61 3beg_B Splicing factor, argini 22.6 1.1E+02 0.0039 24.0 4.9 44 263-316 28-71 (115)
62 2lnd_A De novo designed protei 22.3 1.3E+02 0.0043 23.3 4.7 34 118-151 29-62 (112)
63 2kng_A Protein LSR2; DNA-bindi 21.9 26 0.00088 25.1 0.7 26 123-148 9-34 (55)
64 2dhg_A TRNA selenocysteine ass 21.6 1.1E+02 0.0037 23.2 4.5 48 266-316 24-71 (104)
65 3bs9_A Nucleolysin TIA-1 isofo 21.2 1.8E+02 0.006 21.0 5.5 47 266-316 21-68 (87)
66 2yl5_A Beta-N-acetylhexosamini 21.2 56 0.0019 33.0 3.3 28 124-151 92-121 (442)
67 3llb_A Uncharacterized protein 21.1 1.7E+02 0.006 21.8 5.5 42 179-227 7-48 (83)
68 3md3_A Nuclear and cytoplasmic 20.9 1.4E+02 0.0049 24.0 5.5 47 267-317 16-62 (166)
69 1p27_B RNA-binding protein 8A; 20.9 1.6E+02 0.0054 22.3 5.4 48 266-317 38-86 (106)
70 3md1_A Nuclear and cytoplasmic 20.7 1.7E+02 0.0058 20.8 5.3 47 266-316 16-63 (83)
71 2dnz_A Probable RNA-binding pr 20.6 1.7E+02 0.0058 21.5 5.4 48 266-317 20-68 (95)
72 2cq3_A RNA-binding protein 9; 20.4 1.5E+02 0.005 22.4 5.1 46 266-316 30-75 (103)
73 3lae_A UPF0053 protein HI0107; 20.1 2E+02 0.0068 21.3 5.6 41 180-227 8-48 (81)
74 3nmr_A Cugbp ELAV-like family 20.0 1.6E+02 0.0054 24.1 5.5 47 267-317 111-157 (175)
No 1
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=100.00 E-value=6.7e-61 Score=501.10 Aligned_cols=345 Identities=38% Similarity=0.635 Sum_probs=316.0
Q ss_pred CCCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc
Q 014408 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (425)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~ 156 (425)
.++++++++|++++|+++|+++++.+..|++||+..+++.|.+|++|+|++||+++|++|+++++|++|+|||||+.|++
T Consensus 12 ~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~~~g~~ 91 (476)
T 3pm9_A 12 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQ 91 (476)
T ss_dssp CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSSCCSSSTT
T ss_pred cCCHHHHHHHHHhcCCCcEecCHHHHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCc
Confidence 47789999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccc
Q 014408 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236 (425)
Q Consensus 157 ~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~ 236 (425)
+|..++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++...+||||++++|+||.++.+||.+
T Consensus 92 ~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~~yG~~ 171 (476)
T 3pm9_A 92 TPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA 171 (476)
T ss_dssp CCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHHHHCCH
T ss_pred cCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCcccccCcH
Confidence 98778999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 237 ~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
+|+|+++++|++||++++++....|++.||||+++++||+|+|||||+++||++|.|+.....++.|++++++.+++.++
T Consensus 172 ~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 172 RDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp HHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999888899999999999999999
Q ss_pred HHHcCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceEEEeCCH
Q 014408 317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDI 396 (425)
Q Consensus 317 ~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 396 (425)
++..+..|+++|+||+.++++++++ ++.+.|++.. .+++||+|++|++++ ++++++++++.+.+.+...+..+++++
T Consensus 252 ~~~~g~~p~a~El~d~~~~~~~~~~-~~~~~~~~~~-~~~~llve~~g~~~~-~~~~~~~~~~~~~~~g~~~~~~~a~~~ 328 (476)
T 3pm9_A 252 QGEAAGNLTSFELIAETPLDFSVRH-ANNRDPLEAR-YPWYVLIELSSPRDD-ARAALESILERGFEDGIVVDAAIANSV 328 (476)
T ss_dssp HHHHGGGEEEEEEEEHHHHHHHHHH-TTCCCCSSSC-CSEEEEEEEEESSSC-HHHHHHHHHHHHHHTTCCCEEEECCSH
T ss_pred HHhcCCCceEEEecCHHHHHHHHhc-cCCCCCCCcc-CCeEEEEEEccCcHH-HHHHHHHHHHHHHhcCCCcceEEeCCH
Confidence 8666778999999999999999887 4566666543 568999999998843 456778888887777766789999999
Q ss_pred HHHHHHHHHhccCccc------------cccchhhhhhhc
Q 014408 397 NQASSFWRIREVPNFN------------SIYYPCVQDYLN 424 (425)
Q Consensus 397 ~~~~~lw~~R~~~~~~------------~~~~~~~~~~~~ 424 (425)
++++++|++||.++++ .+|++++++|+.
T Consensus 329 ~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~ 368 (476)
T 3pm9_A 329 QQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIE 368 (476)
T ss_dssp HHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHH
Confidence 9999999999977643 238888888864
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=1.5e-51 Score=445.92 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=238.7
Q ss_pred CCCHHHHHHHHHhhCCCceecChHHHHHhhhc---------cccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeC
Q 014408 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANED---------WMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG 147 (425)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d---------~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG 147 (425)
.++++++++|+++.+. +.++.+++..+++. |.+.|+..|++||+|+|++||+++|++|+++++||+|||
T Consensus 159 ~~~~~~~~~l~~~~~~--~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVvprG 236 (658)
T 4bby_A 159 IVNEDFLHELKKTNIS--YSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIG 236 (658)
T ss_dssp CCCHHHHHHHHHHTCE--EECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCHHHHHHHHHhccc--ccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678999999999875 45666665555432 456788899999999999999999999999999999999
Q ss_pred CCCCCCCCcccc----CCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceecccccc
Q 014408 148 GNTGLVGGSVPV----FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (425)
Q Consensus 148 gGt~~~g~~~~~----~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~ 223 (425)
||||+.|+..+. .++|+|||++||+|+++|+++.+++|||||++.+|+++|.++|++||++|++.+.|||||++++
T Consensus 237 gGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~~aTIGG~iAt 316 (658)
T 4bby_A 237 GGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316 (658)
T ss_dssp SCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTTTCBHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCccccEEeehhhc
Confidence 999999987753 4579999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEc
Q 014408 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (425)
Q Consensus 224 nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~ 303 (425)
|++|.++.+||.++|+|+++|||++||++++.+. ..|+++||||+++|+||||||||||+++|||+|.|+...+.++.|
T Consensus 317 na~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~~-~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f 395 (658)
T 4bby_A 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQ-GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAF 395 (658)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEEECSCC-CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCCCCccCcCCHHHheeeEEEEeCCCccccccc-ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCcccccccccc
Confidence 9999999999999999999999999999988654 568899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhc
Q 014408 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLE 343 (425)
Q Consensus 304 ~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~ 343 (425)
+|++++.+++.++.+ .+..|+++|+||+..+++.....+
T Consensus 396 ~d~~~a~~av~~i~~-~~~~psa~El~D~~~~~~~~~~~~ 434 (658)
T 4bby_A 396 PNFEQGVACLREIAK-QRCAPASIRLMDNQQFQFGHALKP 434 (658)
T ss_dssp SSHHHHHHHHHHHHH-TTCCCSEEEEECHHHHHHHHHTSS
T ss_pred CCchhhhhhHHHHHH-cCCCccccccccHHHHHHHHhhcc
Confidence 999999999999875 377899999999999998876543
No 3
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=3.9e-49 Score=421.19 Aligned_cols=323 Identities=17% Similarity=0.271 Sum_probs=267.6
Q ss_pred CCCHHHHHHHHHhh-CCCceecChHHHHHhhhc-----ccc----ccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEe
Q 014408 77 TLNSEDVSYFKELL-GEKSVIQDEDVLLAANED-----WMR----KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (425)
Q Consensus 77 ~~~~~~l~~L~~il-g~~~v~~~~~~l~~y~~d-----~~~----~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~r 146 (425)
.++++++++|++++ | ++|.+++..+..|++| |.. .+...|.+|++|+|++||+++|++|+++++||+|+
T Consensus 89 ~~~~~~~~~L~~~l~g-~~v~~~~~~~~~y~~d~~~~~~~~~~~g~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~pv~~~ 167 (584)
T 2uuu_A 89 KQYPEFVRELKAFFLP-DQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPM 167 (584)
T ss_dssp CCCHHHHHHHHTTSCG-GGEECSHHHHHHTTCCSSHHHHHHHHTTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCHHHHHHHHhhcCC-CeEEECHHHHHHhccCCchhhhhhhccCccCCCCCEEEeCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 36778999999999 8 8899999888778753 222 34578999999999999999999999999999999
Q ss_pred CCCCCCCCCcccc---CCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceecccccc
Q 014408 147 GGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (425)
Q Consensus 147 GgGt~~~g~~~~~---~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~ 223 (425)
|||||+.|+++|. .++|+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++.+.+||||++++
T Consensus 168 GgGts~~gg~~~~~~~~g~vvidl~~mn~I~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~ 247 (584)
T 2uuu_A 168 GGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLAT 247 (584)
T ss_dssp SSCCCSSCTTSCCCCSSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHH
T ss_pred eCCCCCCCCCcccCCCCCEEEEECCCCCccEEEcCCCCEEEECCCCcHHHHHHHHHHcCCeeCcCCCccCCeeEeeeccC
Confidence 9999999998875 4689999999999999999999999999999999999999999999999988888999999999
Q ss_pred ccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEc
Q 014408 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (425)
Q Consensus 224 nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~ 303 (425)
|++|.++.+||.++|+|+++|||++||++++. ...+++.||||+++++||+|+|||||+++||++|.|+......+.|
T Consensus 248 na~G~~~~~yG~~~d~V~~levVl~dG~i~~~--~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f 325 (584)
T 2uuu_A 248 CSSGHQSDKYGDIEDMAVSFRTVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLF 325 (584)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEECCC---------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCcccccCcCcHHHheeeEEEEeCCCCEEEC--CccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEc
Confidence 99999999999999999999999999998752 2346779999999999999999999999999999999888888999
Q ss_pred CCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhcC--CC---------------CCCCCCCcceEEEEEecCCC
Q 014408 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEG--VR---------------NPFSSSMHNFYVLIETTGSE 366 (425)
Q Consensus 304 ~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~--~~---------------~~l~~~~~~~~llie~~g~~ 366 (425)
++++++.+++.++.+ .+..|+++|+||+..+++.....+. .. .+++.. ..+++++|++|++
T Consensus 326 ~~~~~a~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~llve~~g~~ 403 (584)
T 2uuu_A 326 PTFAHAVSALQQIRS-SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFK-NVCLSIIGFEGPK 403 (584)
T ss_dssp SSHHHHHHHHHHHHH-HTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTT-TCEEEEEEEEECH
T ss_pred CCHHHHHHHHHHHHh-cCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCC-ccEEEEEEEecCh
Confidence 999999999999876 4778999999999888754332111 00 133322 4689999999985
Q ss_pred hHHHHHHHHHHHHHHhhCCCcceEEEeCCHHHHHHHHHHhccCcc
Q 014408 367 ESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNF 411 (425)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lw~~R~~~~~ 411 (425)
+ .++++++.+.+.+.+.+... .. ++..++|+.|+...+
T Consensus 404 ~-~v~~~~~~~~~~~~~~g~~~---~~---~~~~~lW~~r~~~~~ 441 (584)
T 2uuu_A 404 K-VVDFHRTSVFDILSKNAAFG---LG---SAPGKTWAEKRYDLP 441 (584)
T ss_dssp H-HHHHHHHHHHHHHHTTTCEE---EE---EESTTHHHHGGGGHH
T ss_pred H-HHHHHHHHHHHHHHHCCCcc---ch---HHHHHHHHHhhhchH
Confidence 4 45667777777666655432 12 256779998876444
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=100.00 E-value=3.1e-50 Score=427.76 Aligned_cols=259 Identities=20% Similarity=0.267 Sum_probs=237.0
Q ss_pred HHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcccc
Q 014408 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (425)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~ 159 (425)
++++++|++++|+++|.+++..+..|++||+ .+.+.|.+|++|+|++||+++|++|+++++||+|+|||||+.|+++|.
T Consensus 10 ~~~~~~L~~~~g~~~v~~~~~~~~~y~~d~~-~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~G~~~~~ 88 (571)
T 1f0x_A 10 KAFLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPN 88 (571)
T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHHBCSS-SCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCC
T ss_pred HHHHHHHHHhcCCCeEEcCHHHHHHHhcccc-ccCCCccEEEeeCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCccCC
Confidence 4678999999998899999989999999997 578899999999999999999999999999999999999999999886
Q ss_pred CC-----eEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCc-CcceeccccccccCcCCcccc
Q 014408 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (425)
Q Consensus 160 ~~-----gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~-~~~tvGG~va~nagG~~~~~y 233 (425)
.+ +++|||++||+|+++|+ +++++||||+++.+|+++|.++|+.+|++|++. ..+||||++++|+||.++.+|
T Consensus 89 ~~~~~r~gvvIdl~rmn~I~~id~-~~~v~v~aGv~l~~L~~~l~~~Gl~~p~~~g~s~~~~tvGG~ia~nagG~~~~~y 167 (571)
T 1f0x_A 89 GNDYDRDVVIISTLRLDKLHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRG 167 (571)
T ss_dssp BSCCSSCEEEEECTTCCCEEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHHHHTTCCCSCTTSC
T ss_pred CcCCcCceEEEECcccCCceeECC-CCeEEEcCCcCHHHHHHHHHhcCccCCcCCCccCCCceecccccCCCCcccccCC
Confidence 53 89999999999999995 678999999999999999999999998888754 356999999999999999999
Q ss_pred ccccc----------------eEeEEEEEecCCceeeccCCcc------------CCCCCC-----------------Cc
Q 014408 234 GSLHG----------------NVLGLEAVLANGDVIDMLGTLR------------KDNTGY-----------------DL 268 (425)
Q Consensus 234 G~~~d----------------~V~~levVl~dG~iv~~~~~~~------------k~~~g~-----------------dL 268 (425)
|.++| +|+++++|++||++++++.... |+++|| ||
T Consensus 168 G~~~d~~~~~~~~~~~~l~~~~vl~levVl~dG~i~~~~~~~~~~~~~~~~~~~~k~~~Gy~~~~~~~d~~~p~~~~~Dl 247 (571)
T 1f0x_A 168 PAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADP 247 (571)
T ss_dssp SSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTHHHHHHCTTCSSCSCCTTCG
T ss_pred CchhhhhhhheeccCCceEEEEeeeEEEEcCCCcEEEecCccccccchhhhcccccccCCcccccccccccccccccccH
Confidence 99999 9999999999999998875432 688899 99
Q ss_pred hhhh--hcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHh
Q 014408 269 KHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTY 341 (425)
Q Consensus 269 ~~~~--~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~ 341 (425)
+++| +||+|+||| |+++|+++|.|+....+++.|++++++.+++..+++..+..|+++|+||+..+++++++
T Consensus 248 ~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~a~E~~d~~~~~~~~~~ 321 (571)
T 1f0x_A 248 DRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKY 321 (571)
T ss_dssp GGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEEEEEEHHHHHHHC--
T ss_pred HHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHh
Confidence 9999 999999999 99999999999988888999999999999999998556778999999999999988665
No 5
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=100.00 E-value=2.3e-47 Score=406.38 Aligned_cols=321 Identities=18% Similarity=0.188 Sum_probs=257.7
Q ss_pred HHHHHHHHhhCCCceecChHHHHH----hhhc------ccc--ccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCC
Q 014408 81 EDVSYFKELLGEKSVIQDEDVLLA----ANED------WMR--KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGG 148 (425)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~l~~----y~~d------~~~--~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGg 148 (425)
+++++|++++|+++|.+|+..+.. |++| |+. .+++.|.+||+|+|++||+++|++|+++++||+|+|+
T Consensus 23 ~~~~~L~~~~g~~~v~~d~~~~~~~~~~y~~d~~~~d~~~~~~~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~pv~~~g~ 102 (560)
T 1e8g_A 23 EFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISI 102 (560)
T ss_dssp HHHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCSCTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHhhCcccEecCHHHhhhhhhhhccccccccccccccccccCCcEEEeCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 468899999999999999999988 8887 554 4688899999999999999999999999999999999
Q ss_pred CCCCC-CCccc-cCCeEEEEe-CCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCC--cccCCCCcCcceecccccc
Q 014408 149 NTGLV-GGSVP-VFDEVIINM-GSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI--MPLDLGAKGSCQIGGNVST 223 (425)
Q Consensus 149 Gt~~~-g~~~~-~~~gvvIdl-s~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~--lp~~pgs~~~~tvGG~va~ 223 (425)
|||+. |+..| ..++|+||| ++||+|+++|+++.+++||||+++.+|+++|.++|+. +|++|++.+.+|+||++++
T Consensus 103 Gt~~~~gg~~p~~~~gvvidl~~~mn~il~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~tigG~~~~ 182 (560)
T 1e8g_A 103 GRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE 182 (560)
T ss_dssp CCCTTTTTTCCSSTTCEEEECTTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHT
T ss_pred CCcCCcCCCCCCcCCEEEEEchHhcCCeEEEcCCCCEEEEeCCCCHHHHHHHHHHcCCccccCCCCCCCCccchhhhccC
Confidence 99997 87776 578999999 9999999999999999999999999999999999999 9888888778999999999
Q ss_pred ccCcCCccccccccceEeEEEEEecCCceeeccCCccCC-------------------------CCCCCchhhhhcCCCC
Q 014408 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD-------------------------NTGYDLKHLFIGSEGS 278 (425)
Q Consensus 224 nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~-------------------------~~g~dL~~~~~Gs~Gt 278 (425)
|++|.+ +||.++|+|+++|||++||++++++....++ ..||||.++|. +||
T Consensus 183 ~g~g~~--~yG~~~d~v~~l~vVl~dG~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~Gy~l~~L~~--~Gt 258 (560)
T 1e8g_A 183 RGVGYT--PYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFS--QSN 258 (560)
T ss_dssp TCBCSS--TTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSSCCCGGGGS--SSS
T ss_pred CCCCcc--cceeHHHheeeeEEEeCCCCEEEecCcccCcccccccccchhhhhhhhcccccccccCCcchhcccc--cCc
Confidence 998865 8999999999999999999999988644443 45899999986 579
Q ss_pred ceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHH--cCCCceEEEeeCHHHHHHHH-----HhhcCCCCCCCC
Q 014408 279 LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK--LGEILSAFEFLDNQSMDLVL-----TYLEGVRNPFSS 351 (425)
Q Consensus 279 lGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~p~a~E~~d~~~~~~~~-----~~~~~~~~~l~~ 351 (425)
|||||+++||++|.|+....+++.|++++++.+++..+++. .+..|+++||||+.. +++. .+. ....+++.
T Consensus 259 lGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~p~~~el~d~~~-~~~~l~~~~~~~-~~~~~~p~ 336 (560)
T 1e8g_A 259 MGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILL-DAAVLGDKRSYS-SRTEPLSD 336 (560)
T ss_dssp SEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHH-HHHHHCCGGGTC-CCSSCCCH
T ss_pred EEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHcCCCcceeEEechHH-Hhhhhhhhhhhc-cCCCCCCH
Confidence 99999999999999999888899999999987776654422 366799999999985 3321 221 10012221
Q ss_pred C----------CcceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceEEEeCCHHHHHHHHHHhccCc
Q 014408 352 S----------MHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPN 410 (425)
Q Consensus 352 ~----------~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lw~~R~~~~ 410 (425)
. ...+++++|++|+. +.+++.++.+.+.+.+.+ ..+..+++++++.+.+|. |+.+.
T Consensus 337 ~~~~~l~~~~~~~~~~l~~e~~g~~-~~v~~~~~~i~~i~~~~~-~~~~~~~~~~~e~~~~w~-R~~~~ 402 (560)
T 1e8g_A 337 EELDKIAKQLNLGRWNFYGALYGPE-PIRRVLWETIKDAFSAIP-GVKFYFPEDTPENSVLRV-RDKTM 402 (560)
T ss_dssp HHHHHHHHHHTCCSEEEEEEEESCH-HHHHHHHHHHHHHHTTST-TCEEECGGGSCTTCHHHH-HHHHT
T ss_pred HHHHHHHhhcCCCceEEEEEEeCCH-HHHHHHHHHHHHHHHhCC-CceeeccccchhhhhHHH-HHhhc
Confidence 1 12578999999964 445566665555444444 356666777777778886 87654
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=100.00 E-value=6.2e-46 Score=392.21 Aligned_cols=322 Identities=19% Similarity=0.208 Sum_probs=258.0
Q ss_pred HHHHHHHHhhCCCceecChHHHHHhhhccccc--cCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCC-CCcc
Q 014408 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRK--YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-GGSV 157 (425)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~--~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~-g~~~ 157 (425)
+++++|++++|++.|.+++..+..|.+||+.. +++.|.+|++|+|++||+++|++|+++++||+|+|+|||+. |++.
T Consensus 19 ~~~~~L~~~l~~~~v~~~~~~~~~y~~d~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~pv~~~g~G~~~~~g~~~ 98 (520)
T 1wvf_A 19 KAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAA 98 (520)
T ss_dssp HHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTS
T ss_pred HHHHHHHHhcCCCeEecCcHHHHHHhcccccccccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCC
Confidence 46789999999999999999999999998764 67889999999999999999999999999999999999997 7766
Q ss_pred c-cCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccC-CCCcCcceeccccccccCcCCcccccc
Q 014408 158 P-VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLD-LGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (425)
Q Consensus 158 ~-~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~-pgs~~~~tvGG~va~nagG~~~~~yG~ 235 (425)
+ ..++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++ +++.+.+||||++++|++|.. +||.
T Consensus 99 ~~~~~gvvidl~~m~~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~igG~~~~~g~g~~--~yG~ 176 (520)
T 1wvf_A 99 PVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYT--PYGE 176 (520)
T ss_dssp CSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSS--TTCB
T ss_pred CCCCCeEEEECCCCCceEEECCCCCEEEECCCCCHHHHHHHHHHcCCcccCCCCCCCCeeeeeecccCCCcCCc--cccc
Confidence 6 46799999999999999999999999999999999999999999999887 333458999999999998875 8999
Q ss_pred ccceEeEEEEEecCCceeeccCCcc---------CCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCH
Q 014408 236 LHGNVLGLEAVLANGDVIDMLGTLR---------KDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (425)
Q Consensus 236 ~~d~V~~levVl~dG~iv~~~~~~~---------k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~ 306 (425)
++|+|+++|||++||++++++.... +...||||.++|.|+ +|||||+++||++|.|+....+++.|+++
T Consensus 177 ~~d~v~~~evV~~dG~v~~~~~~~~~~~~l~~~~~~~~Gy~l~~l~~g~--~lGiVt~~~l~l~p~p~~~~~~~~~f~~~ 254 (520)
T 1wvf_A 177 HFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQA--NYGICTKMGFWLMPKPPVFKPFEVIFEDE 254 (520)
T ss_dssp GGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTS--SSCEEEEEEEECEECCSEEEEEEEEECCG
T ss_pred hhhcEeeeEEEcCCCcEEEeCCCcCCCchhHhhhcCCCCcchhhhccCC--ceEEEEEEEEEEEecCCeEEEEEEEeCCH
Confidence 9999999999999999999864221 224699999999764 99999999999999999888888899998
Q ss_pred HHHHHHH---HHHHHHcCCCceEEEeeCHHHHHHHHHhh--cC-C-CCCCCCC----------CcceEEEEEecCCChHH
Q 014408 307 FSCQKLL---REAKRKLGEILSAFEFLDNQSMDLVLTYL--EG-V-RNPFSSS----------MHNFYVLIETTGSEESY 369 (425)
Q Consensus 307 ~~~~~a~---~~~~~~~~~~p~a~E~~d~~~~~~~~~~~--~~-~-~~~l~~~----------~~~~~llie~~g~~~~~ 369 (425)
+++.+++ ..+++ .+..|+++|+||+..+.++.... +. . ..+++.+ ...+++++|++|+. +.
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~ 332 (520)
T 1wvf_A 255 ADIVEIVDALRPLRM-SNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQ-EQ 332 (520)
T ss_dssp GGHHHHHHHHHHHHH-TTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHHHHHHHCCCSEEEEEEEEESH-HH
T ss_pred HHHHHHHHHHHHHHH-cCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHHHHHhcCCCceEEEEEEeCCH-HH
Confidence 8766644 44443 36679999999999776664310 00 0 0112210 03468899999965 44
Q ss_pred HHHHHHHHHHHHhhCCCcceEEEeCCHHHHHHHHHHhccCc
Q 014408 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPN 410 (425)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lw~~R~~~~ 410 (425)
+++.++.+.+.+.+.+. .....+.++ +.+++|..|+.+.
T Consensus 333 v~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~~~w~~R~~~~ 371 (520)
T 1wvf_A 333 VDVNWKIVTDVFKKLGK-GRIVTQEEA-GDTQPFKYRAQLM 371 (520)
T ss_dssp HHHHHHHHHHHHHHHTC-CEEEEHHHH-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-eEEEecccc-hhhhHHHHHHHhh
Confidence 45555555554544442 344444444 5678999998665
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=100.00 E-value=1.8e-47 Score=404.18 Aligned_cols=329 Identities=14% Similarity=0.182 Sum_probs=259.7
Q ss_pred CHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHh-CCCcEEEeCCCCCCCCCcc
Q 014408 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS-RLLAVVPQGGNTGLVGGSV 157 (425)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~-~~ipv~~rGgGt~~~g~~~ 157 (425)
.+.++++|+ + +++|.+|+..+..|++||+..++..|.+|++|+|++||+++|++|++ +++||+|+|||||+.|++.
T Consensus 27 ~~~~~~~l~--~-~~~v~~d~~~~~~~~~d~~~~~~~~P~~vv~P~s~eeV~~iv~~a~~~~~~~v~~~GgGts~~g~~~ 103 (524)
T 2exr_A 27 TDGVSESLN--I-QGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAM 103 (524)
T ss_dssp -------CC--C-SSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSSTTC
T ss_pred HHHHHHhcC--C-CCeEEeCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhhcCceEEEECCCcCCCCccc
Confidence 345667776 4 67899999999999999988889999999999999999999999996 9999999999999999888
Q ss_pred ccCCeEEEEeCCCCCeeEEeC-----CC--CEEEEecCccHHHH-HHHHHhCCCCcccCCCCcCcceeccccccccCcCC
Q 014408 158 PVFDEVIINMGSMNNIITFDK-----GS--GVLVCEAGCILENL-VSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (425)
Q Consensus 158 ~~~~gvvIdls~ln~I~~id~-----~~--~~v~veaGv~~~~L-~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~ 229 (425)
+. ++|+|||++||+| ++|+ ++ .+++||||+++.++ +.+++++|+. |++|++...+||||++++|++|.+
T Consensus 104 ~~-~gvvidl~~m~~i-~i~~~~~~~~~~~~~v~v~aGv~~~~l~~~~l~~~Gl~-~~~~~s~~~~tiGG~va~ng~G~~ 180 (524)
T 2exr_A 104 AE-GGLVVDMSTTAEN-HFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLA-PRSWTDYLGLTVGGTLSNAGVSGQ 180 (524)
T ss_dssp CT-TSEEEEGGGGTTS-CEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEE-CSCCCSCCSSBHHHHHTTCCCCTT
T ss_pred CC-CEEEEECcCCCCc-EEeecccCCCCCceEEEEeCCcCHHHHHHHHHHHcCCC-CCCCCcCCceeecccCCCCCCccc
Confidence 74 7899999999999 8887 55 79999999999997 5556699998 778887788999999999998999
Q ss_pred ccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHH
Q 014408 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSC 309 (425)
Q Consensus 230 ~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~ 309 (425)
+.+||.++|+|+++++|++||++++++.. .++||+++++||+|+|||||+++||+.|.|+...+..+.|++++++
T Consensus 181 ~~~yG~~~d~V~~l~vV~~dG~v~~~~~~-----~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~~ 255 (524)
T 2exr_A 181 AFRYGPQTSNVTELDVVTGNGDVVTCSEI-----ENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEF 255 (524)
T ss_dssp HHHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHHH
T ss_pred ccccCcHhhhEEEEEEEecCCeEEEECCC-----CChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHHHH
Confidence 99999999999999999999999998754 5789999999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHHcCCCceEEEeeCHHHHHHHHHh---hcCC---------CCCCCCCCcceEEEEEe-----cCCChHHHHH
Q 014408 310 QKLLREAKRKLGEILSAFEFLDNQSMDLVLTY---LEGV---------RNPFSSSMHNFYVLIET-----TGSEESYDRE 372 (425)
Q Consensus 310 ~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~---~~~~---------~~~l~~~~~~~~llie~-----~g~~~~~~~~ 372 (425)
.+++..+.+. +.. +++|+||...+...... .... ...++.....+++++|+ +|++++++++
T Consensus 256 ~~~~~~l~~~-~~~-~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~llve~~~~~~~g~~~~~v~~ 333 (524)
T 2exr_A 256 TQDAEWLVSQ-KNE-SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDK 333 (524)
T ss_dssp HHHHHHHHTS-CTT-SSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHc-CCc-chhHhhchhhhhcchhhhhhhhhcccccccccchhcCCcccccEEEEEEEEeecCCCCCHHHHHH
Confidence 9999888643 333 57888887544322110 0000 01232111358899999 8988887788
Q ss_pred HHHHHHHHHhhCCCcceEE-------EeCCHHHHHHHHHHhccCcccc--------ccchhhhhhh
Q 014408 373 KLEAFLLSSMEGGLISDGV-------IAQDINQASSFWRIREVPNFNS--------IYYPCVQDYL 423 (425)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~lw~~R~~~~~~~--------~~~~~~~~~~ 423 (425)
+++.+++.+...+. .... ++++.++. .|+.|+...++. +|.+++++|+
T Consensus 334 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~W~~R~~~~~a~~~~~~Dv~VP~s~l~~~~ 396 (524)
T 2exr_A 334 RVERLIGRLRFNEG-LRFEVDLPYVDFLLRVKRS--EEIAKENGTWETPHPWLNLFVSKRDIGDFN 396 (524)
T ss_dssp HHHHHHTTCCCCTT-CEEEEEEEHHHHHTTTHHH--HHHHHHTTCSSSCCCCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-eEeecccchhhhhhhhhhH--HHHhhhhcccccCCCeeEEEECHHHHHHHH
Confidence 88877766554443 2222 34444333 399999876542 3777777765
No 8
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=100.00 E-value=3.3e-45 Score=387.79 Aligned_cols=334 Identities=13% Similarity=0.147 Sum_probs=258.9
Q ss_pred CCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHh--C-CCcEEEeCCCCCCCC
Q 014408 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS--R-LLAVVPQGGNTGLVG 154 (425)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~--~-~ipv~~rGgGt~~~g 154 (425)
.+.+++++|+++..+++|.+|+..+..|.+||+..+.+.|.+|++|+|++||+++|++|++ + ++|++|+|+|||+.|
T Consensus 30 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~~~v~~~G~G~~~~g 109 (534)
T 1w1o_A 30 RGRPWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMG 109 (534)
T ss_dssp ----------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSS
T ss_pred chHHHHHHHHhcCCCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Confidence 3446778899966678899999999999999988889999999999999999999999997 6 999999999999999
Q ss_pred CccccCCeEEEEeCCCCCe-----eEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCC
Q 014408 155 GSVPVFDEVIINMGSMNNI-----ITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (425)
Q Consensus 155 ~~~~~~~gvvIdls~ln~I-----~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~ 229 (425)
++.+ .++++|||++||+| +++|+++.+++||||+++.+|++++.++|+. ++++++...+||||++++|++|..
T Consensus 110 ~~~~-~~gvvi~l~~m~~i~~~~~~~~d~~~~~v~v~aGv~~~~l~~~~~~~Gl~-~~~~~~~~~~tvGG~v~~~g~g~~ 187 (534)
T 1w1o_A 110 QAFA-PGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVA-PRSWTDYLYLTVGGTLSNAGISGQ 187 (534)
T ss_dssp TTCC-TTSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEE-ESCCCSSCCSBHHHHHTTCCCSTT
T ss_pred CcCC-CCeEEEECccccccccCccEEEcCCCCEEEECCCcCHHHHHHHHHHCCCc-ccCCCCCCCEEeceeccCCCcccc
Confidence 8876 47899999999998 7999989999999999999999999999995 667777778999999999999999
Q ss_pred ccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHH
Q 014408 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSC 309 (425)
Q Consensus 230 ~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~ 309 (425)
+.+||.++|+|+++|||++||++++++.. .++||+|+++||+|+|||||+++||++|.|+...++.+.|++++++
T Consensus 188 ~~~yG~~~d~v~~~evV~~dG~v~~~~~~-----~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~ 262 (534)
T 1w1o_A 188 AFRHGPQISNVLEMDVITGHGEMVTCSKQ-----LNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAF 262 (534)
T ss_dssp HHHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHH
T ss_pred ccccccHhhhEEEEEEEeCCccEEEECCC-----CChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHHHH
Confidence 99999999999999999999999998764 6789999999999999999999999999999888888889999998
Q ss_pred HHHHHHHHHHcCC-----CceEEEeeCHHHHHH---HHHhhcCC-CC---------CCCCC-CcceEEEEEec----CCC
Q 014408 310 QKLLREAKRKLGE-----ILSAFEFLDNQSMDL---VLTYLEGV-RN---------PFSSS-MHNFYVLIETT----GSE 366 (425)
Q Consensus 310 ~~a~~~~~~~~~~-----~p~a~E~~d~~~~~~---~~~~~~~~-~~---------~l~~~-~~~~~llie~~----g~~ 366 (425)
.+++..+++. +. .|+++|+||...+.. +..+ +.. .. +++.. ..++++++|+. |.+
T Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~e~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ie~~~~~~g~~ 340 (534)
T 1w1o_A 263 SADQERLTAP-RPGGGGASFGPMSYVEGSVFVNQSLATDL-ANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNAT 340 (534)
T ss_dssp HHHHHHHHCB-C------CBCSCSEEEEEEEEGGGHHHHH-HTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC----
T ss_pred HHHHHHHHhc-ccccccccccchhHhhhhhhccccccccc-ccccccCccccccccccccccccceEEEEEEEEecCCCc
Confidence 8888777643 44 578999999866542 3332 222 11 11110 03478889987 765
Q ss_pred h--HHHHHHHHHHHHHHhhCCCcceEE-------EeCCHHHHHHHHHHhccCccc--------cccchhhhhhh
Q 014408 367 E--SYDREKLEAFLLSSMEGGLISDGV-------IAQDINQASSFWRIREVPNFN--------SIYYPCVQDYL 423 (425)
Q Consensus 367 ~--~~~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~lw~~R~~~~~~--------~~~~~~~~~~~ 423 (425)
+ +.+++.++.+++.+.+.+. .+.. ++++. ...+|++|+...++ .+|.+.+++|+
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~y~~~~~~~--~~~~w~~r~~~~~~~~~~~~d~~vP~s~l~~~~ 411 (534)
T 1w1o_A 341 AAAAAVDQELASVLGTLSYVEG-FAFQRDVAYAAFLDRV--HGEEVALNKLGLWRVPHPWLNMFVPRSRIADFD 411 (534)
T ss_dssp ---CHHHHHHHHHHTTCCCCTT-CEEEEEEEHHHHHTHH--HHHHHHHHHTTCSSSCCCCEEEEEEGGGHHHHH
T ss_pred cchhhhHHHHHHHHHhhcccCC-cceeccchHHHHhhhh--hhhHHHHhhccccccCCccccEEecHHHHHhHH
Confidence 4 5556667777765544432 1111 12221 34679999876432 24777777765
No 9
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=100.00 E-value=7e-37 Score=321.57 Aligned_cols=231 Identities=16% Similarity=0.202 Sum_probs=195.2
Q ss_pred HHHHHHHHHhhCCCceecChH-----HHHHhh--hccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 014408 80 SEDVSYFKELLGEKSVIQDED-----VLLAAN--EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (425)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~-----~l~~y~--~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~ 152 (425)
+++++.|.+.++++.|++... .+..|. ..|+.....+|.+||+|+|++||+++|++|+++++||++|||||++
T Consensus 9 ~~f~~~L~~~~~~~~v~~~~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~gGh~~ 88 (500)
T 3tsh_A 9 EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDY 88 (500)
T ss_dssp CHHHHHHHHHSCGGGEEETTSTTHHHHHHTTCCCTTTTSTTSCCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCT
T ss_pred HHHHHHHHhhCCCCEEECCCCCccHHHHHhhhccccccCCCCCCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcCC
Confidence 468899999999888876532 233332 2387777888999999999999999999999999999999999998
Q ss_pred CCCc---cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCC
Q 014408 153 VGGS---VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (425)
Q Consensus 153 ~g~~---~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~ 229 (425)
.|.+ .+.+++++|||++||+| ++|+++++++||||+++.+|+++|.++|+.+++.+|++.++++||+++++++|..
T Consensus 89 ~g~s~~~~~~~~~~~idl~~~~~v-~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~g~~ 167 (500)
T 3tsh_A 89 EGLSYRSLQPETFAVVDLNKMRAV-WVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGML 167 (500)
T ss_dssp TCTTTCCSSSCCEEEEECTTCCCE-EEETTTTEEEEETTSBHHHHHHHHHHHCTTEECCCCSSTTSBHHHHHHTCCCCTT
T ss_pred CCCcCCCCCcCCeEEEECcCCCCE-EECCCCCEEEEccCcCHHHHHHHHHHhCCCcccCCCCCCCceecCccccccCCcc
Confidence 7643 34567999999999998 9999999999999999999999999999888877889999999999999999999
Q ss_pred ccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhc-CCCCceEEEEEEEEcccCCcceeEEEEEcCCHHH
Q 014408 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFS 308 (425)
Q Consensus 230 ~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~G-s~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~ 308 (425)
+.+||.++|+|+++|||++||++++.. ..+.||+|+++| ++|+|||||+++||++|.|+....+...+...+.
T Consensus 168 ~~~~G~~~d~v~~~~vV~a~G~i~~~~------~~~~dl~~a~~gg~gg~fGvvt~~~~~~~p~p~~~~~~~~~~~~~~~ 241 (500)
T 3tsh_A 168 LRKYGIAAENVIDVKLVDANGKLHDKK------SMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEG 241 (500)
T ss_dssp HHHHCCGGGGEEEEEEECTTSCEECHH------HHCHHHHHHHTTSCSSTTCEEEEEEEECEECCSCEEEEEEEEETTTT
T ss_pred ccccCChhhheeeEEEECCCceEEECC------CCChHHHHHHHhhcccceEEEEEEEEEEEeCCCeEEEEEEecCcHHH
Confidence 999999999999999999999988643 246699999995 5679999999999999999876655555544444
Q ss_pred HHHHHHHHH
Q 014408 309 CQKLLREAK 317 (425)
Q Consensus 309 ~~~a~~~~~ 317 (425)
+.+++..++
T Consensus 242 ~~~~~~~~~ 250 (500)
T 3tsh_A 242 AVDIINKWQ 250 (500)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 10
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=100.00 E-value=6e-35 Score=304.91 Aligned_cols=219 Identities=18% Similarity=0.215 Sum_probs=187.7
Q ss_pred CceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcc-ccCCeEEEEeCCCC
Q 014408 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGSMN 171 (425)
Q Consensus 93 ~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~-~~~~gvvIdls~ln 171 (425)
..+..++..+......|+.++.+.|.+|++|+|++||+++|++|+++++|+.++|||||+.|.+. +..++++|||++||
T Consensus 13 ~v~~p~~~~y~~~~~~~n~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~vvIdl~~~~ 92 (473)
T 3rja_A 13 PIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMI 92 (473)
T ss_dssp CBCCTTSHHHHHHTCCSBTTSCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCTTCGGGTSSSSCEEEECTTCC
T ss_pred cEECCCCCchHHHHHHhhcccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCcccCCCCeEEEECCCCC
Confidence 44555666677777889888999999999999999999999999999999999999999986443 34578999999999
Q ss_pred CeeEEeCCCCEEEEecCccHHHHHHHHHhCC-CCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCC
Q 014408 172 NIITFDKGSGVLVCEAGCILENLVSFLDDHG-FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANG 250 (425)
Q Consensus 172 ~I~~id~~~~~v~veaGv~~~~L~~~l~~~G-l~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG 250 (425)
+|.++|+++.+++||||+++.+|.++|.++| +.+|. |++..++|||.+++|++|..+.+||.++|+|+++|||++||
T Consensus 93 ~i~~vd~~~~~v~v~aG~~~~~l~~~l~~~G~~~~p~--G~~~~vgvgG~~~ggg~G~~~~~~G~~~D~v~~~~vV~a~G 170 (473)
T 3rja_A 93 DVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISH--GTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADG 170 (473)
T ss_dssp CEEEEETTTTEEEECTTCBHHHHHHHHHHHHSEECCC--CSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTS
T ss_pred ceEEEcCCCCEEEECCCCCHHHHHHHHHHcCCEEecc--CCCCCcEeeeeccCCCCCcccccccchHhheeeEEEEecCC
Confidence 9966999999999999999999999999999 66763 67778899999999999999999999999999999999999
Q ss_pred ceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEc--CCHH---HHHHHHHHHHH
Q 014408 251 DVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC--KDYF---SCQKLLREAKR 318 (425)
Q Consensus 251 ~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~--~~~~---~~~~a~~~~~~ 318 (425)
++++++.. .++||+|+++|++|+|||||+++||++|.|+....+.+.+ ++.+ ++++++.++..
T Consensus 171 ~v~~~~~~-----~~~dLf~a~rG~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
T 3rja_A 171 RIVEASAT-----ENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYAR 238 (473)
T ss_dssp CEEEEETT-----BSHHHHHHHHHHGGGTCEEEEEEEECEECCSCEEEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCC-----CCcchhhcccCCCCceEEEEEEEEEEEeCCCceEEEEEEecCccHHHHHHHHHHHHHHhh
Confidence 99998754 5789999999999999999999999999998665554444 3233 44444444443
No 11
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=100.00 E-value=1.2e-34 Score=301.55 Aligned_cols=212 Identities=19% Similarity=0.230 Sum_probs=184.6
Q ss_pred ChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEe
Q 014408 98 DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD 177 (425)
Q Consensus 98 ~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id 177 (425)
++..+......|+..+.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+. ..++++|||++||+| ++|
T Consensus 20 ~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~-~~~gvvi~l~~l~~i-~~d 97 (459)
T 2bvf_A 20 DDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYAT-NDGGIVLDLRLMNSI-HID 97 (459)
T ss_dssp TSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTC-CSSSEEEECTTCCCE-EEE
T ss_pred CCccHHHHHHHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCccc-cCCeEEEECCCCCCE-EEC
Confidence 344455556778888889999999999999999999999999999999999999988764 367899999999999 899
Q ss_pred CCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccC
Q 014408 178 KGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (425)
Q Consensus 178 ~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~ 257 (425)
+++.+++||||+++.+|.++|.++|+.+|. |....++|||++.++++|+.+.+||.++|+|+++|||++||++++++.
T Consensus 98 ~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~--g~~~~~gi~G~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~ 175 (459)
T 2bvf_A 98 TAGSRARIGGGVISGDLVKEAAKFGLAAVT--GMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSD 175 (459)
T ss_dssp TTTTEEEEETTCBHHHHHHHHHTTTEEECC--CSCTTSBHHHHHTTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEES
T ss_pred CCCCEEEECCCCCHHHHHHHHHHcCCEecC--CCCCCcccceeecCCCCccccccccCHhHhEEEEEEEcCCCeEEEeCC
Confidence 999999999999999999999999999885 556678899999999999999999999999999999999999999875
Q ss_pred CccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCC--HH--HHHHHHHHHHH
Q 014408 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKD--YF--SCQKLLREAKR 318 (425)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~--~~--~~~~a~~~~~~ 318 (425)
. .++||+|+++|++|+|||||+++||++|.|+......+.|+. .+ ++++++.++..
T Consensus 176 ~-----~~~dLf~a~rg~~g~~GiVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
T 2bvf_A 176 D-----ERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALN 235 (459)
T ss_dssp S-----SSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred C-----CChhhHhHhhccCCccEEEEEEEEEEEECCCcEEEEEEEechHHhhHHHHHHHHHHHHH
Confidence 4 468999999999999999999999999997655555555543 45 56666666544
No 12
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=100.00 E-value=2.5e-37 Score=308.61 Aligned_cols=267 Identities=15% Similarity=0.225 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc
Q 014408 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (425)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~ 156 (425)
+++.+++++|++++|+++|.+ +..+..|+++ .+++.|.+|++|+|++||++++++|+++++|++|+|||||+.+++
T Consensus 13 ~~~~~~~~~l~~~l~~~~v~~-~~~l~~~~t~---~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~~~GgGtnl~~~~ 88 (326)
T 1hsk_A 13 PINKDIYQALQQLIPNEKIKV-DEPLKRYTYT---KTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIRE 88 (326)
T ss_dssp --CHHHHHHHHHHSCGGGEEE-EEEGGGTCTT---SCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECT
T ss_pred cchHHHHHHHHHhcCccceec-CcchHHhccC---CcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCccccCC
Confidence 366788999999999888888 6778888743 478889999999999999999999999999999999999998877
Q ss_pred cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCC----CcccCCCCcCcceeccccccccCcCCccc
Q 014408 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVR 232 (425)
Q Consensus 157 ~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl----~lp~~pgs~~~~tvGG~va~nagG~~~~~ 232 (425)
.+. ++++||+++||+| ++|. .+++||||+++.+|++++.++|+ +++.+|+ ||||++++|+||
T Consensus 89 ~~~-~gvvI~l~~m~~i-~id~--~~v~v~aGv~~~~l~~~l~~~Gl~gLe~~~~~Pg-----tvGG~i~~nagg----- 154 (326)
T 1hsk_A 89 GGI-RGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG-----SIGGAVYMNAGA----- 154 (326)
T ss_dssp TCE-EEEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCS-----BHHHHHHHTCEE-----
T ss_pred CCC-CeEEEEeCCCCce-EEcC--CEEEEeCCCcHHHHHHHHHHCCCccccccCCCcc-----hhhHHHhccccc-----
Confidence 654 6899999999999 8984 68999999999999999999999 7777765 699999999998
Q ss_pred cc-cccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccC-CcceeEEEEEcCCHHHHH
Q 014408 233 YG-SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQ 310 (425)
Q Consensus 233 yG-~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~-p~~~~~~~~~~~~~~~~~ 310 (425)
|| .++|+|+++++|++||++++++.. ++..||++..++ ++| ||||+++||+.|. |+... ..+
T Consensus 155 yG~~~~d~v~~v~vv~~~G~i~~~~~~--~~~~gyr~~~l~--s~g--gIIt~~~l~l~p~~p~~~~----------~~~ 218 (326)
T 1hsk_A 155 YGGEVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQ--KEH--LVVLEAAFTLAPGKMTEIQ----------AKM 218 (326)
T ss_dssp TTEEHHHHEEEEEEECTTSCEEEEETT--TTTCBTTBCHHH--HTT--CEEEEEEEECEECCHHHHH----------HHH
T ss_pred CchhhhhhEEEEEEEeCCCCEEEEChH--HcCCCccccccC--CCC--EEEEEEEEEEEcCCHHHHH----------HHH
Confidence 99 899999999999999999998765 667888887664 566 9999999999998 54332 233
Q ss_pred HHHHHHHHHcC--------------CCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHHHHHHHHH
Q 014408 311 KLLREAKRKLG--------------EILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEA 376 (425)
Q Consensus 311 ~a~~~~~~~~~--------------~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~~~~ 376 (425)
..+..+++... ..+.++|+||+..++.++. .+. .++ + ..++++||+.|.+.+.+.+.++.
T Consensus 219 ~~~~~~~~a~~p~~~~s~gs~fk~p~~~~a~elid~~glkg~~~--g~a--~v~-~-~~a~~lvn~~ga~~~~v~~~~~~ 292 (326)
T 1hsk_A 219 DDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRI--GGV--EVS-T-KHAGFMVNVDNGTATDYENLIHY 292 (326)
T ss_dssp HHHHHHHHHHSCTTSCEECCCBCCCTTSCHHHHHHHTTCTTCEE--TTE--EEC-S-SCTTCEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcEEEeeeCCCcchHHHHHHHhccCCEEe--CCe--eec-c-cccEEEEECCCCCHHHHHHHHHH
Confidence 33444433211 1234455555433322210 011 122 1 34678999999777666666666
Q ss_pred HHHHHhh
Q 014408 377 FLLSSME 383 (425)
Q Consensus 377 ~~~~~~~ 383 (425)
+.+.+.+
T Consensus 293 v~~~v~~ 299 (326)
T 1hsk_A 293 VQKTVKE 299 (326)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 13
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=100.00 E-value=1e-34 Score=298.94 Aligned_cols=213 Identities=16% Similarity=0.249 Sum_probs=187.9
Q ss_pred hhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEE
Q 014408 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVC 185 (425)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~v 185 (425)
.++|++.++..|.+|++|+|++||+++|++| +|++++|+||++.+.+.+..++++|||++||+|+++|+++++++|
T Consensus 10 ~~~w~~~~~~~p~~v~~P~s~~ev~~~v~~a----~~v~~~G~G~s~~~~~~~~~~g~vi~l~~l~~i~~~d~~~~~v~v 85 (422)
T 2vfr_A 10 VTNWAGNITYTAKELLRPHSLDALRALVADS----ARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAARTVRV 85 (422)
T ss_dssp CBCSSSSCBCSCSSCBCCSSHHHHHHHHHHC----SSEEECSSCCCCSSTTCCCTTCEEECSTTSCCCEEEETTTTEEEE
T ss_pred eecCCCCccCCCCEEEeCCCHHHHHHHHHhC----CCEEEEECCCCCCCCccCCCCcEEEEhhhCCCcEEEcCCCCEEEE
Confidence 3578888999999999999999999999999 899999999999888775567999999999999999999999999
Q ss_pred ecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCC
Q 014408 186 EAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTG 265 (425)
Q Consensus 186 eaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g 265 (425)
|||+++.+|+++|.++|+.+| ++++.+.+||||++++|++|.+ .+||.++|+|+++++|++||++++++.. + +
T Consensus 86 ~aG~~l~~l~~~l~~~Gl~l~-~~~~~~~~tvGG~i~~~~~G~~-~~~G~~~d~v~~~~vv~~~G~~~~~~~~--~-~-- 158 (422)
T 2vfr_A 86 GGGVRYAELARVVHARGLALP-NMASLPHISVAGSVATGTHGSG-VGNGSLASVVREVELVTADGSTVVIARG--D-E-- 158 (422)
T ss_dssp ETTCBHHHHHHHHHHTTEECS-CCCSSSCSBHHHHHHHTCCCCC-TTCCCGGGGEEEEEEECTTSCEEEEETT--S-T--
T ss_pred cCCCCHHHHHHHHHHcCCccc-CCCCCCCeeHHHHHhcCCCCCC-cccCcHHHheEEEEEEeCCCCEEEeCCC--C-C--
Confidence 999999999999999999987 6677777899999999999986 6999999999999999999999998764 1 1
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHH-HHHHHHHHHcCCCceEEEeeCHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ-KLLREAKRKLGEILSAFEFLDNQSMDL 337 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~p~a~E~~d~~~~~~ 337 (425)
. +++++|++|++||||+++||+.|.|+.....++ +.+++++. +++.++. ..+.++|+++ ..++.
T Consensus 159 -~-f~~~~g~~G~lGvit~~~l~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~e~~~-~~~~~ 223 (422)
T 2vfr_A 159 -R-FGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFT-ELPLAGLDPATFETVM----AAAYSVSLFT-DWRAP 223 (422)
T ss_dssp -T-GGGTSSCTTTTCEEEEEEEECEECCEEEEEEEE-EECSTTCCHHHHHHHH----TSSSEEEEEE-CSSSS
T ss_pred -C-cceEEecCCCCEEEEEEEEEEEecCceEEEEEe-cCCHHHHHHHHHHHHH----hcCCcEEEEe-cCCCc
Confidence 1 699999999999999999999999987765554 66888888 8877764 3478899998 66544
No 14
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=100.00 E-value=2.7e-34 Score=301.29 Aligned_cols=203 Identities=19% Similarity=0.239 Sum_probs=178.6
Q ss_pred hhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcccc-CCeEEEEeCCCCCeeEEeCCCCEEE
Q 014408 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV-FDEVIINMGSMNNIITFDKGSGVLV 184 (425)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~-~~gvvIdls~ln~I~~id~~~~~v~ 184 (425)
+..|+......|.+|++|+|++||+++|++|+++++||+++||||++.|.+.+. .++++|||++||+| ++|+++++++
T Consensus 35 n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrGgGh~~~g~~~~~~~ggvvIdl~~m~~i-~vd~~~~~v~ 113 (495)
T 3fw9_A 35 NPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRV-SIDLESETAW 113 (495)
T ss_dssp CGGGCSTTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCSSCEEEEECTTCCCE-EEETTTTEEE
T ss_pred hcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCccccCCCCeEEEECCCCCcE-EEeCCCCEEE
Confidence 456877778899999999999999999999999999999999999998887653 46899999999999 9999999999
Q ss_pred EecCccHHHHHHHHHhC--CCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCC
Q 014408 185 CEAGCILENLVSFLDDH--GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (425)
Q Consensus 185 veaGv~~~~L~~~l~~~--Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~ 262 (425)
||||+++.+|.++|.++ |+.+| +|+.++++|||+++++++|..+.+||.++|+|++++||++||++++. +
T Consensus 114 V~aG~~l~~l~~~l~~~g~gl~~~--~G~~~~vgigG~~~gGg~G~~~~~~G~~~D~v~~~~vV~adG~i~~~------~ 185 (495)
T 3fw9_A 114 VESGSTLGELYYAITESSSKLGFT--AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDR------Q 185 (495)
T ss_dssp EETTCBHHHHHHHHHHHCSSEECC--CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECH------H
T ss_pred EcCCCCHHHHHHHHHHhcCCceec--cCCCCCCeEeeeccCCCCcccccCCCchhheEEEEEEEcCCCCEEEc------C
Confidence 99999999999999999 66666 57888899999999999999999999999999999999999999972 2
Q ss_pred CCCCCchhhhhc-CCCCceEEEEEEEEcccCCcceeEEEEEcC-CHHHHHHHHHHHH
Q 014408 263 NTGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAK 317 (425)
Q Consensus 263 ~~g~dL~~~~~G-s~GtlGIIT~~tlkl~p~p~~~~~~~~~~~-~~~~~~~a~~~~~ 317 (425)
..++||+|+++| ++|+|||||+++||++|.|+....+.+.++ +.+++.+++..++
T Consensus 186 ~~~~DLf~a~rGg~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~a~~~l~~~~ 242 (495)
T 3fw9_A 186 AMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQ 242 (495)
T ss_dssp HHCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCChhhhhhhhcccCCCcEEEEEEEEEEEeCCCeEEEEEEeecCcHHHHHHHHHHHH
Confidence 357899999998 789999999999999999997766655553 3455666665554
No 15
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=100.00 E-value=8.6e-34 Score=298.58 Aligned_cols=206 Identities=18% Similarity=0.255 Sum_probs=178.7
Q ss_pred hhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcc-ccCCeEEEEeCCCCCeeEEeCCCCEEE
Q 014408 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGSMNNIITFDKGSGVLV 184 (425)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~-~~~~gvvIdls~ln~I~~id~~~~~v~ 184 (425)
+..|+......|.+|++|+|++||+++|++|+++++||++|||||++.|.+. +..++++|||++||+| ++|+++++++
T Consensus 43 n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~ 121 (518)
T 3vte_A 43 NLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSI-KIDVHSQTAW 121 (518)
T ss_dssp BGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCTTCTTTCCSSSEEEEECTTCCCE-EEETTTTEEE
T ss_pred ccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCCCCeEEEECCCCcee-EEeCCCCEEE
Confidence 3458777788999999999999999999999999999999999999988775 3357999999999999 8999999999
Q ss_pred EecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCC
Q 014408 185 CEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNT 264 (425)
Q Consensus 185 veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~ 264 (425)
||||+++.+|.++|.++|+.+.+.+|.+++++|||+++++++|..+.+||.++|+|++++||++||++++.. ..
T Consensus 122 V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~------~~ 195 (518)
T 3vte_A 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRK------SM 195 (518)
T ss_dssp EETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHH------HH
T ss_pred EeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEee------cc
Confidence 999999999999999986554444688888999999999999999999999999999999999999999642 24
Q ss_pred CCCchhhhhcC-CCCceEEEEEEEEcccCCcceeEEEEEcC-CHHHHHHHHHHHHH
Q 014408 265 GYDLKHLFIGS-EGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAKR 318 (425)
Q Consensus 265 g~dL~~~~~Gs-~GtlGIIT~~tlkl~p~p~~~~~~~~~~~-~~~~~~~a~~~~~~ 318 (425)
++||+|+++|+ +|+|||||+++||++|.|+....+.+.+. +.+++.+++..+++
T Consensus 196 ~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (518)
T 3vte_A 196 GEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQN 251 (518)
T ss_dssp CHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred ccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHH
Confidence 67999999998 89999999999999999987655545443 45666777766654
No 16
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=100.00 E-value=7.5e-34 Score=297.04 Aligned_cols=204 Identities=16% Similarity=0.242 Sum_probs=184.9
Q ss_pred hhhccccccCCCccEEEEcCCHHHHHHHHHHHHhC--CCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCE
Q 014408 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGV 182 (425)
Q Consensus 105 y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~--~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~ 182 (425)
+.++|. ++.+.|.+|++|+|++||+++|++|+++ ++|++++|+|||+.+.+.+ .+|++|||++||+|+++|+++++
T Consensus 32 ~~~~W~-~~~~~p~~vv~P~s~eev~~~v~~a~~~~~~~~v~~~G~G~s~~~~~~~-~~gvvIdl~~l~~i~~~d~~~~~ 109 (481)
T 4feh_A 32 RLTGWG-RTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQN-GGGLVIDMTPLNTIHSIDADTKL 109 (481)
T ss_dssp EECCTT-CCSCEEEEEEECSCHHHHHHHHHHHHTTTCTTCEEEECSSCSSSSTTCC-TTSEEEECTTCCCEEEEETTTTE
T ss_pred eeeccc-CCCCCCCEEEeCCCHHHHHHHHHHHHHcCCCceEEEEeCCcCCCCCCCC-cCeEEEECccCCCceEEcCCCCE
Confidence 557885 5788999999999999999999999999 7999999999999766553 57999999999999999999999
Q ss_pred EEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCC
Q 014408 183 LVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (425)
Q Consensus 183 v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~ 262 (425)
|+||||+++.+|.++|.++|+.+|..|++. .+||||++++|+||.++.+||.++|+|+++++|++||++++++..
T Consensus 110 v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~-~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~~s~~---- 184 (481)
T 4feh_A 110 VDIDAGVNLDQLMKAALPFGLWVPVLPGTR-QVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPT---- 184 (481)
T ss_dssp EEEETTCBHHHHHHHHGGGTEECSCCCSCS-CCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEEECSS----
T ss_pred EEEcCCccHHHHHHHHHHcCCEEEEeCCcC-ccccCCccccccCCCCcccCCCccceEeEEEEEeCCCCEEEeCCC----
Confidence 999999999999999999999999888875 579999999999999999999999999999999999999998753
Q ss_pred CCCCCchhhhhcCCCCceEEEEEEEEcccCCcc-eeEEEEEcCCHHHHHHHHHH
Q 014408 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSS-VNLAFLACKDYFSCQKLLRE 315 (425)
Q Consensus 263 ~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~-~~~~~~~~~~~~~~~~a~~~ 315 (425)
..++||+++++||.|++||||+++|++.|.|+. .....+.+.+++++++.+++
T Consensus 185 ~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (481)
T 4feh_A 185 GEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSD 238 (481)
T ss_dssp STTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSS
T ss_pred CCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHH
Confidence 157899999999999999999999999999864 44556788999999988864
No 17
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=100.00 E-value=6e-34 Score=299.49 Aligned_cols=226 Identities=15% Similarity=0.191 Sum_probs=185.8
Q ss_pred HHHHHHhhCCCc--ee-cChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccc-
Q 014408 83 VSYFKELLGEKS--VI-QDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP- 158 (425)
Q Consensus 83 l~~L~~ilg~~~--v~-~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~- 158 (425)
+++|++.+++.. +. .++..+......|+..+.+.|.+|++|+|++||+++|++|+++++|++++||||++.+.+.+
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~~~ 85 (503)
T 1zr6_A 6 FNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85 (503)
T ss_dssp TCHHHHHHHHTTCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTS
T ss_pred HHHHHHhhCcCCceecCCCccchHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccC
Confidence 456777776433 22 23333444456788788899999999999999999999999999999999999999886654
Q ss_pred cCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCC-CCcccCCCCcCcceeccccccccCcCCcccccccc
Q 014408 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHG-FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH 237 (425)
Q Consensus 159 ~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~G-l~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~ 237 (425)
..++++|||++||+| ++| ++++++||||+++.+|.++|.++| +.+|. |....++|||.+.+++.|+.+.+||.++
T Consensus 86 ~~~gvvIdl~~l~~i-~~d-~~~~v~v~aG~~~~~l~~~l~~~~gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~ 161 (503)
T 1zr6_A 86 EDGHLMLELDRMYRV-SVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTCPAVGVGGHVLGGGYGFATHTHGLTL 161 (503)
T ss_dssp SSSCEEEECTTCCCE-EEC-TTSCEEEETTCBHHHHHHHHHHTTSEECCC--CSCTTSBHHHHHHHCCCSTTHHHHCCGG
T ss_pred CCCcEEEECccCCCE-EEC-CCCeEEEecCCCHHHHHHHHHHcCCEEeCC--CCCCcCchhhhhcCCCCCcccccccChh
Confidence 457899999999999 999 888999999999999999996664 77773 5566788999999999999999999999
Q ss_pred ceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcC-CHH---HHHHHH
Q 014408 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYF---SCQKLL 313 (425)
Q Consensus 238 d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~-~~~---~~~~a~ 313 (425)
|+|+++|||++||++++++.. .++||+|+++|++|+|||||+++||++|.|+....+.+.+. +.+ ++++++
T Consensus 162 D~v~~~~vV~a~G~i~~~~~~-----~~~dL~~a~rG~~g~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (503)
T 1zr6_A 162 DWLIGATVVLADASIVHVSET-----ENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKAL 236 (503)
T ss_dssp GGEEEEEEECTTSCEEEEBTT-----BSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEEEECCCHHHHHHHHHHH
T ss_pred heEEEEEEEecCCCEEEeCCC-----CCccHHHHHhccCCCcEEEEEEEEEEEecCceeEEEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999998754 57899999999999999999999999999986554444442 233 444444
Q ss_pred HHHH
Q 014408 314 REAK 317 (425)
Q Consensus 314 ~~~~ 317 (425)
.++.
T Consensus 237 ~~~~ 240 (503)
T 1zr6_A 237 QDWA 240 (503)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 18
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=100.00 E-value=1.7e-33 Score=297.28 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=174.1
Q ss_pred ChHHHHHhh-hccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEE
Q 014408 98 DEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITF 176 (425)
Q Consensus 98 ~~~~l~~y~-~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~i 176 (425)
++..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++||.+|||||++.+.+.+..++++|||++||+| ++
T Consensus 38 ~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~gvvIdl~~m~~i-~~ 116 (523)
T 2wdx_A 38 DDPRYLNLKLRGANSRFNGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVKVIIDMSLLTEI-AY 116 (523)
T ss_dssp TSTTHHHHHTCSSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCSSSSSSSTTCCEEEECTTCCCE-EE
T ss_pred CCcchHHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccCCCCeEEEEcccCCCE-EE
Confidence 334454444 6677777889999999999999999999999999999999999999987766567999999999999 99
Q ss_pred eCCCCEEEEecCccHHHHHHHHH-hCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecC--Ccee
Q 014408 177 DKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN--GDVI 253 (425)
Q Consensus 177 d~~~~~v~veaGv~~~~L~~~l~-~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~d--G~iv 253 (425)
|+++.+++||||+++.+|.++|. ++|+.++. |++++++|||+++++++|+.+.+||.++|+|+++|||++| |+++
T Consensus 117 d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~v~ 194 (523)
T 2wdx_A 117 DPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPG--GVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKAR 194 (523)
T ss_dssp ETTTTEEEECTTCBHHHHHHHHHHHHSCCCCC--CCCTTCBHHHHHHHTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEE
T ss_pred cCCCCEEEEcCCCCHHHHHHHHHHhcCeEEcc--CCCCCCeeCccccCCCCCcccccccChhheEEEEEEEEecCCccEE
Confidence 99999999999999999999998 59998885 7788889999999999999999999999999999999955 9986
Q ss_pred eccCCccCCCCCCCchhhhhcC-CCCceEEEEEEEEc-----------ccCCcc-eeEEEEEcC
Q 014408 254 DMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT-----------PPKLSS-VNLAFLACK 304 (425)
Q Consensus 254 ~~~~~~~k~~~g~dL~~~~~Gs-~GtlGIIT~~tlkl-----------~p~p~~-~~~~~~~~~ 304 (425)
.+.....+++.++||+|+++|+ +|+|||||+++||+ +|.|+. .....+.|+
T Consensus 195 ~~~~~~~~~~~~~DLf~a~rGgg~g~~GIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (523)
T 2wdx_A 195 VIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFD 258 (523)
T ss_dssp EEEEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSSCCCSCGGGSSCCCCSEEEEEEEECC
T ss_pred EEecccccCCCChHHHHHhhccCCCCcEEEEEEEEEeecccCCCcccccCCCcccEEEEEEEec
Confidence 5532212345566799999964 69999999999999 998863 444555554
No 19
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=100.00 E-value=4.3e-33 Score=294.12 Aligned_cols=202 Identities=20% Similarity=0.293 Sum_probs=173.2
Q ss_pred CCCceecChHHHHHhh-hccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCC
Q 014408 91 GEKSVIQDEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS 169 (425)
Q Consensus 91 g~~~v~~~~~~l~~y~-~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ 169 (425)
+...+..++..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++|+.+|||||++.+.+.+..++++|||++
T Consensus 29 ~~~v~~p~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGh~~~g~~~~~~~gvvIdl~~ 108 (521)
T 2ipi_A 29 ALVKVDRVDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQ 108 (521)
T ss_dssp CCCEEESSSTTHHHHHTCCSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTTCCEEEECTT
T ss_pred CCeEECCCCcchHHHHhccccccccCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccCCCeEEEeccc
Confidence 4444555555565555 778888889999999999999999999999999999999999999988766556799999999
Q ss_pred CCCeeEEeCCCCEEEEecCccHHHHHHHHH-hCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEec
Q 014408 170 MNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLA 248 (425)
Q Consensus 170 ln~I~~id~~~~~v~veaGv~~~~L~~~l~-~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~ 248 (425)
||+| ++|+++.+|+||||+++.+|.++|. ++|+.+|. |....++|||++++++.|+.+.+||.++|+|+++|||++
T Consensus 109 l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~ 185 (521)
T 2ipi_A 109 MRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIPA--GVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVVV 185 (521)
T ss_dssp CCCE-EEETTTTEEEECTTSBHHHHHHHHHHHHSBCCCC--CSCTTCBHHHHTTTTCCCTTHHHHCCGGGGEEEEEEEEE
T ss_pred CCCe-EEeCCCCEEEEeCCcCHHHHHHHHHHhcCceeCC--CCCCCcccCCcccCCCCCccccccccHhhcEEEEEEEEe
Confidence 9999 9999999999999999999999997 79999874 556678999999999999999999999999999999997
Q ss_pred C--CceeeccCCccCCCCCCCchhhhhcC-CCCceEEEEEEEEc-----------ccCCcc
Q 014408 249 N--GDVIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT-----------PPKLSS 295 (425)
Q Consensus 249 d--G~iv~~~~~~~k~~~g~dL~~~~~Gs-~GtlGIIT~~tlkl-----------~p~p~~ 295 (425)
| |+++.......+++.++||+|+++|+ +|+|||||+++||+ +|.|+.
T Consensus 186 d~~G~i~~~~~~~~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~~~~~~~~~~~~p~~~~ 246 (521)
T 2ipi_A 186 DASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAPT 246 (521)
T ss_dssp CTTSCEEEEEEECCTTCTTHHHHHHTTTSCSSSSCEEEEEEECCSSCCSSCGGGSSCBCCS
T ss_pred cCCccEEEEecccccCCCCHHHHHHHhcCCCCceEEEEEEEEEeecccCCCcccccCCCCc
Confidence 7 99755432211244556799999985 69999999999999 898763
No 20
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=100.00 E-value=4e-33 Score=292.85 Aligned_cols=197 Identities=13% Similarity=0.162 Sum_probs=170.3
Q ss_pred HhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEe
Q 014408 88 ELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINM 167 (425)
Q Consensus 88 ~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdl 167 (425)
.-+....+..++..+......|+.++...|.+|++|+|++||+++|++|+++++||++|||||++.+.+.+.+++++|||
T Consensus 6 ~s~~~~~~~p~~~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~gvvIdl 85 (501)
T 3pop_A 6 ASVPPFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVLDL 85 (501)
T ss_dssp ---CCEEEETTSTTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTSSCCSEEEEC
T ss_pred ccCCCceECCCCcchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCccCCCccccCCCEEEEEe
Confidence 33444445555566666667888888999999999999999999999999999999999999999988876667999999
Q ss_pred CCCCCeeEEeCCCCEEEEecCccHHHHHHHHH-hCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEE
Q 014408 168 GSMNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAV 246 (425)
Q Consensus 168 s~ln~I~~id~~~~~v~veaGv~~~~L~~~l~-~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levV 246 (425)
++||+| ++|+++++++||||+++.+|.++|. ++|+.+| .|.+.+++|||.++++++|..+.+||.++|+|+++|||
T Consensus 86 ~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~--~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~evV 162 (501)
T 3pop_A 86 HNLHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALP--LGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVA 162 (501)
T ss_dssp TTCCCE-EECTTSSSEEEETTCBHHHHHHHHHHHHSBCCC--CCSBTTCBHHHHHHHCCCCTTHHHHCCGGGGEEEEEEE
T ss_pred cccCCe-EEcCCCCEEEEECCcCHHHHHHHHHhhcCeEeC--CCCCCCceEeeccccCCCcccccccccHHHhEEEEEEE
Confidence 999999 8999999999999999999999996 5799887 36677888999999999999999999999999999999
Q ss_pred e--cCCc--eeeccCCccCCCCCCCchhhhhcC-CCCceEEEEEEEEc
Q 014408 247 L--ANGD--VIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT 289 (425)
Q Consensus 247 l--~dG~--iv~~~~~~~k~~~g~dL~~~~~Gs-~GtlGIIT~~tlkl 289 (425)
+ +||+ ++++++. ....++||+|+++|+ +|+|||||+++||+
T Consensus 163 ~~da~G~~~~v~~~~~--~~~~~~DLf~a~rG~G~g~fGIVt~~~lk~ 208 (501)
T 3pop_A 163 VVDESRTVRLVTARAD--DTGDLGELFWAHTGGGGGNFGVVTAYEFRS 208 (501)
T ss_dssp EECTTSCEEEEEEETT--CCHHHHHHHHHTTTSCTTSSCEEEEEEECC
T ss_pred EecCCCCEEEEEeccC--CCCCCccHHHHhhccCCCCcEEEEEEEEEe
Confidence 9 8999 5655321 123578999999998 79999999999998
No 21
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=100.00 E-value=3.6e-32 Score=287.51 Aligned_cols=193 Identities=20% Similarity=0.262 Sum_probs=167.5
Q ss_pred cChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEE
Q 014408 97 QDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITF 176 (425)
Q Consensus 97 ~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~i 176 (425)
.++..+....+.|+.++.+.|.+|++|+|++||+++|++|+++++||+++||||++.+.+.+..++++|||++||+| ++
T Consensus 39 p~~~~Y~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~gvvIdl~~l~~i-~~ 117 (530)
T 2y3s_A 39 PGDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAV-GF 117 (530)
T ss_dssp TTSTTHHHHTCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTCTTCCEEEECTTCCCE-EE
T ss_pred CCCccHHHHHhHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccCCCeEEEEcccCCCE-EE
Confidence 34455555667787788889999999999999999999999999999999999999887765567999999999999 99
Q ss_pred eCCCCEEEEecCccHHHHHHHHHh-CCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEe--cCCcee
Q 014408 177 DKGSGVLVCEAGCILENLVSFLDD-HGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL--ANGDVI 253 (425)
Q Consensus 177 d~~~~~v~veaGv~~~~L~~~l~~-~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl--~dG~iv 253 (425)
|+++.+|+||||+++.+|.++|.+ +|+.++. |++++++|||++++++.|+.+.+||.++|+|+++|||+ ++|+++
T Consensus 118 d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~i~ 195 (530)
T 2y3s_A 118 DEERGAFAVEAGATLGAVYKTLFRVWGVTLPG--GACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDAR 195 (530)
T ss_dssp ETTTTEEEEETTCBHHHHHHHHHHHHSCCCCC--CSCTTCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEE
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHhhcCeEEeC--CCCCCCCcCCCcCCCCCCcccccccchhhheeeEEEEEecCCCcEE
Confidence 999999999999999999999985 8998874 77888999999999999999999999999999999999 559985
Q ss_pred eccCCccCCCCCC--CchhhhhcC-CCCceEEEEEEEEc------------ccCCc
Q 014408 254 DMLGTLRKDNTGY--DLKHLFIGS-EGSLGIVTKVSIHT------------PPKLS 294 (425)
Q Consensus 254 ~~~~~~~k~~~g~--dL~~~~~Gs-~GtlGIIT~~tlkl------------~p~p~ 294 (425)
.+... +...++ ||+|+++|+ +|+|||||+++||+ +|.|+
T Consensus 196 ~v~~~--~~~~~~d~DLf~a~rG~g~g~fGIVt~~~l~l~~~~~~~~~~~~~p~~~ 249 (530)
T 2y3s_A 196 TVIAT--REPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPP 249 (530)
T ss_dssp EEEEE--SCTTCTTHHHHHHTTTSCTTSSCEEEEEEECCCCSSCCSCGGGSSCCCC
T ss_pred EEecc--ccccCCChHHHHHHhcCCCCCcEEEEEEEEEeecccCccccccccCCCC
Confidence 43211 111334 499999987 69999999999999 89875
No 22
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=99.97 E-value=9.6e-31 Score=278.42 Aligned_cols=201 Identities=20% Similarity=0.307 Sum_probs=169.8
Q ss_pred HHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccc----cCCeEEEEe-CCCCCeeE
Q 014408 101 VLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP----VFDEVIINM-GSMNNIIT 175 (425)
Q Consensus 101 ~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~----~~~gvvIdl-s~ln~I~~ 175 (425)
.+..+.++|+..+.+.|.+|++|+|++||+++|++|+++++|++++|+|||+.+.+.. ..++++||| ++||+| +
T Consensus 20 ~y~~~~~~w~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~~i-~ 98 (561)
T 2i0k_A 20 LFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGI-T 98 (561)
T ss_dssp CEEEEEECTTSSSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCE-E
T ss_pred hHHHHHhhhhhccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCCce-E
Confidence 3444567898889999999999999999999999999999999999999998542221 136899999 899999 9
Q ss_pred EeC--CCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCC----------ccccccccceEeEE
Q 014408 176 FDK--GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGL 243 (425)
Q Consensus 176 id~--~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~----------~~~yG~~~d~V~~l 243 (425)
+|+ ++++|+||||+++.+|.++|.++|+.+|+.|+. +.+||||++++|+||.. +.+||.++|+|+++
T Consensus 99 vd~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~~~-~~~TvGG~i~~~~~G~~l~~gG~~~~s~~~~G~~~d~V~~~ 177 (561)
T 2i0k_A 99 VNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAP-GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTEL 177 (561)
T ss_dssp EECCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCCSC-TTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEE
T ss_pred ecCcCCccEEEEcCCCCHHHHHHHHHHcCCcccccCCC-CCcccCCCcccCCcccccccCCcccccccccccHhheEEEE
Confidence 998 788999999999999999999999999988876 56899999999999986 77899999999999
Q ss_pred EEEecCCc---eeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHH
Q 014408 244 EAVLANGD---VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (425)
Q Consensus 244 evVl~dG~---iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a 312 (425)
|+|++||+ ++++.. + ..||+++++|. |. ||||+++||+.|.|+.....+..++ ++++++.
T Consensus 178 evV~~dG~~~~~~~~~~----~--~~dl~~a~~g~-G~-giIt~~tl~l~p~~~~~~~~~~~~~-~~~~l~~ 240 (561)
T 2i0k_A 178 TAVVWNGTTYALETYQR----N--DPRITPLLTNL-GR-CFLTSVTMQAGPNFRQRCQSYTDIP-WRELFAP 240 (561)
T ss_dssp EEEEECSSSEEEEEEET----T--SGGGHHHHSCT-TS-SCEEEEEEECEECCEEEEEEECCSC-HHHHTCC
T ss_pred EEEeCCCCEEEeeeccC----C--CccHHHHHhcC-CC-EEEEEEEEEEEECCceEEEEEEccC-HHHHHHH
Confidence 99999999 655543 2 35899988854 55 8999999999999987666554444 5555443
No 23
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=99.97 E-value=1.7e-30 Score=273.27 Aligned_cols=194 Identities=17% Similarity=0.289 Sum_probs=165.9
Q ss_pred hhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCC-----CCccccCCeEEEEeC-CCCCeeEEeCC
Q 014408 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-----GGSVPVFDEVIINMG-SMNNIITFDKG 179 (425)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~-----g~~~~~~~gvvIdls-~ln~I~~id~~ 179 (425)
.++|+..+.+.|.+|++|+|++||+++|++|+++++||+++|+|||+. ++. +..++++|||+ +||+| ++|++
T Consensus 19 ~~nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~~~~pv~v~GgGhs~~~l~~~gG~-~~~~GVvIdls~~Ln~I-~vD~~ 96 (540)
T 3js8_A 19 FKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGV-SCPAVVLLDTTRYLTAM-SIDAS 96 (540)
T ss_dssp EECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCSSCSSCCTTC-SSCSEEEEETTTTCCCE-EEECS
T ss_pred eeccccccCCCccEEEEcCCHHHHHHHHHHHHHcCCeEEEEeCCCCcccccccCCC-CCCCeEEEECcCcCCCE-EECCC
Confidence 467888889999999999999999999999999999999999999986 554 55789999995 69999 99985
Q ss_pred --CCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCC----------ccccccccceEeEEEEEe
Q 014408 180 --SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGLEAVL 247 (425)
Q Consensus 180 --~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~----------~~~yG~~~d~V~~levVl 247 (425)
..+|+||||+++.+|.++|.++|+.++..+++ +.+||||++++|+||.+ +.+||.++|+|+++++|+
T Consensus 97 ~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi-~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~~levV~ 175 (540)
T 3js8_A 97 GPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAP-GDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVV 175 (540)
T ss_dssp SSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSC-SCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEE
T ss_pred CCccEEEEccCCCHHHHHHHHHHcCCEEEecCCC-CCeEEcccccCCCCcccccccccccccccccccHHHhEEEEEEEc
Confidence 57999999999999999999999999988876 45899999999999986 479999999999999999
Q ss_pred cCCc-----eeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHH
Q 014408 248 ANGD-----VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQK 311 (425)
Q Consensus 248 ~dG~-----iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~ 311 (425)
+||+ +++++. .++||++++.|+ |+ ||||+++||++|.+......+. .-+++++++
T Consensus 176 adG~~~~~~i~~~s~------~~~DL~a~r~G~-G~-gIVTevtlrl~P~~~l~~~~~~-~~~~~e~l~ 235 (540)
T 3js8_A 176 YDKASGAYALRKFAR------NDPQIAPLLAHV-GR-SLIVEATLQAAPNQRLRCQSWF-NIPYGEMFA 235 (540)
T ss_dssp EETTTTEEEEEEEET------TSGGGHHHHTCT-TS-SCEEEEEEEEEECCEEEEEEEC-CSCHHHHTC
T ss_pred CCCCCceeeEEEeCC------CChhHHHHHhcC-CC-eEEEEEEEEEEECCceEEEEEe-cCCHHHHHh
Confidence 9999 666542 468997666555 77 6999999999999876654321 235677664
No 24
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=99.97 E-value=8.3e-31 Score=260.77 Aligned_cols=273 Identities=15% Similarity=0.197 Sum_probs=193.4
Q ss_pred CCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCcc
Q 014408 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (425)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~ 157 (425)
|+++++++|+++++++++.++ +.+..|++ .++++.|.++++|+|++||++++++|+++++|++++|+|||+.+++.
T Consensus 20 ~~~~~~~~L~~~lg~~~v~~~-~~l~~~tt---~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~v~GgGsnl~~~~~ 95 (322)
T 3tx1_A 20 FQSNAMNNLQTKFPHIAIKLN-EPLSKYTY---TKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDG 95 (322)
T ss_dssp -----CCCHHHHCTTSEEEEE-EEGGGGST---TSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEEEESCCTTEEECTT
T ss_pred cCHHHHHHHHHhcCCcceEcC-cchHHhcc---CCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEEEECCccCCCcCCC
Confidence 566788899999999989888 67888884 46788999999999999999999999999999999999999976654
Q ss_pred ccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccc-cc
Q 014408 158 PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRY-GS 235 (425)
Q Consensus 158 ~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~y-G~ 235 (425)
+ .++++||+++||+| .+| +.+++|+||++|.+|.+++.++|+. +.+.++.+ +||||++++|+|| | |.
T Consensus 96 ~-~~gvvI~l~~~~~I-~~d--~~~v~v~aG~~~~~l~~~l~~~Gl~Gle~~~giP--gTVGGav~~NaGg-----yGg~ 164 (322)
T 3tx1_A 96 G-IRGVILHLDLLQTI-ERN--NTQIVAMSGAKLIDTAKFALNESLSGLEFACGIP--GSIGGALHMNAGA-----YGGE 164 (322)
T ss_dssp C-EEEEEEECTTCCCE-EEE--TTEEEEETTSBHHHHHHHHHHTTEESCGGGTTCC--SBHHHHHHHTCEE-----TTEE
T ss_pred C-CCeEEEECCCCCcE-EEC--CCEEEEecCcCHHHHHHHHHHcCCcccccCCCCc--chhHHHHHhCccC-----cccc
Confidence 3 36899999999999 576 3599999999999999999999995 22223333 4699999999999 6 68
Q ss_pred ccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHH
Q 014408 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLRE 315 (425)
Q Consensus 236 ~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~ 315 (425)
++|+|+++++|++||++++++. +..+|++.+.+.|+++ ||||+++|||.|.|+. ++.+.++.+.+
T Consensus 165 ~~d~v~~vevV~~~G~i~~~~~----~~~~~~yR~s~~g~~~--~IIt~~tl~L~p~~~~---------~i~~~~~~~~~ 229 (322)
T 3tx1_A 165 ISDVLEAATVLTQTGELKKLKR----SELKAAYRFSTIAEKN--YIVLDATFSLALEEKN---------LIQAKMDELTA 229 (322)
T ss_dssp HHHHEEEEEEECTTSCEEEEEG----GGCC--CC-CTTTGGG--CEEEEEEEECEECCHH---------HHHHHHHHHHH
T ss_pred hHhhEEEEEEEcCCCCEEEech----HHcCcchhhcccCCCC--EEEEEEEEEEEeCCHH---------HHHHHHHHHHH
Confidence 9999999999999999999764 3456777777776654 7999999999998752 23445555555
Q ss_pred HHHHcCC--CceEE-EeeCH---HHHHHHHHh-hcCCCC---CCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHh
Q 014408 316 AKRKLGE--ILSAF-EFLDN---QSMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSM 382 (425)
Q Consensus 316 ~~~~~~~--~p~a~-E~~d~---~~~~~~~~~-~~~~~~---~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~ 382 (425)
.|+...+ .|++= -|-+. .+-.++.+. +++.+. .+.+ ..+..+|-..+.+.+.+.+.++.+.+.+.
T Consensus 230 ~R~~kqP~~~~saGS~FknP~g~~Ag~LIe~~GlkG~~~G~a~vs~--kha~fivN~g~Ata~dv~~L~~~v~~~V~ 304 (322)
T 3tx1_A 230 AREAKQPLEYPSCGSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSL--KHAGFIVNIGGATATDYMNLIAYVQQTVR 304 (322)
T ss_dssp HHHHHSCCSSCBCSCCBCCCTTSCHHHHHHHTTCTTCEETTEEECS--SCTTCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCceeEEEECCCCchHHHHHHHcCCCCceeCCeEEEc--CCCCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 5543322 23332 12222 244555443 112111 1121 23445667766666555554444444443
No 25
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=99.94 E-value=6.9e-26 Score=226.88 Aligned_cols=203 Identities=15% Similarity=0.127 Sum_probs=160.9
Q ss_pred HHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCC-
Q 014408 102 LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS- 180 (425)
Q Consensus 102 l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~- 180 (425)
+..|+ +.++++.|+++++|+|++||++++++|+++++|++++|+|||+.+.+. .+|+||+++ |++|..++.++
T Consensus 3 L~~~t---t~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~vlGgGSnll~~d~--~~GvVI~l~-~~~i~~i~~~~~ 76 (340)
T 1uxy_A 3 LKPWN---TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLED--YRGTVIINR-IKGIEIHDEPDA 76 (340)
T ss_dssp CGGGS---TTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECSC--EEEEEEEEC-CCCEEEEECSSE
T ss_pred ccccc---cCCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEEECCCcCCcccCC--CCeEEEEcc-CCCcEEEecCCC
Confidence 34455 456789999999999999999999999999999999999999987653 368999996 99997777776
Q ss_pred CEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEec-CCceeeccC
Q 014408 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVIDMLG 257 (425)
Q Consensus 181 ~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~-dG~iv~~~~ 257 (425)
.+++|+||++|.+|.+++.++|+. +....+.+ +||||++.+|+|+ ||. ++|+|.++++|++ ||++++++.
T Consensus 77 ~~v~vgAG~~~~~l~~~~~~~Gl~Gle~~~gIP--GtVGGa~~~NaGa-----yG~ei~d~v~~v~vv~~~~G~v~~~~~ 149 (340)
T 1uxy_A 77 WYLHVGAGENWHRLVKYTLQEGMPGLENLALIP--GCVGSSPIQNIGA-----YGVELQRVCAYVDSVELATGKQVRLTA 149 (340)
T ss_dssp EEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCC--SBGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCHHHHHHHHHHCCCCccccccCCc--cchhHHHHhcccc-----chhhHHhheeEEEEEECCCCcEEEEeH
Confidence 689999999999999999999995 44444554 3699999999988 995 9999999999997 999999875
Q ss_pred CccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCccee----EEEE--EcCCHHHHHHHHHHHHHHc
Q 014408 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVN----LAFL--ACKDYFSCQKLLREAKRKL 320 (425)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~----~~~~--~~~~~~~~~~a~~~~~~~~ 320 (425)
. ....+|... .+.+++|++||||+++|++.|.|.... ...+ ..++..+.++++.++|+..
T Consensus 150 ~--d~~~gYR~s-~~~~~~~~~gIVt~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~k 215 (340)
T 1uxy_A 150 K--ECRFGYRDS-IFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTK 215 (340)
T ss_dssp G--GGTCBTTBC-GGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTTCCHHHHHHHHHHHHHHH
T ss_pred H--HhccccCcC-ccCCcCCCCEEEEEEEEEEEcCCCccCCHHHHhhhccccccHHHHHHHHHHHHHhc
Confidence 4 334455443 344556789999999999999863220 0000 1235678888888887654
No 26
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=99.94 E-value=4.3e-26 Score=229.40 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=161.2
Q ss_pred HHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeC-
Q 014408 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK- 178 (425)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~- 178 (425)
..+..|+ +.++++.|+++++|+|++||++++++|+++++|++++|+|||+.+.+. .+|+||+++ |++| ++++
T Consensus 17 ~~L~~~t---t~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~vlGgGSNll~~d~--~~GvVI~l~-~~~i-~v~~~ 89 (357)
T 3i99_A 17 ANLKPYH---TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNMLFTCH--YTGMIVVNR-LNGI-EHQQD 89 (357)
T ss_dssp EESGGGS---TTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEEECSC--EEEEEEEEC-CCCE-EEEEC
T ss_pred Ccchhhc---cCCCCccceEEEEECCHHHHHHHHHHHHHcCCCEEEECCCcCcccCCC--CCeEEEEcC-CCce-EEecc
Confidence 3567777 467899999999999999999999999999999999999999977654 368999998 9998 6653
Q ss_pred -CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCcccccc-ccceEeEEEEEec-CCceee
Q 014408 179 -GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVID 254 (425)
Q Consensus 179 -~~~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~levVl~-dG~iv~ 254 (425)
++.+++|+||++|.+|.+++.++|+. +....+.++ ||||++++|+|. ||. ++|+|+++++|++ ||++++
T Consensus 90 ~~~~~v~v~AG~~~~~l~~~a~~~Gl~GlE~l~gIPG--tVGGav~~NaGa-----YG~e~~d~v~~vevv~~~~G~i~~ 162 (357)
T 3i99_A 90 DDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPG--CAGSAPIQNIGA-----YGVEFKDVCDYVEYLCLETGTVKR 162 (357)
T ss_dssp SSEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCcHHHHHHHHHHcCCcCccccCCCCc--hhHHHHHhchhh-----hhhhHHhhEeEEEEEECCCCcEEE
Confidence 45689999999999999999999996 444445543 699999999986 997 9999999999998 999999
Q ss_pred ccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeE-----EEEEcCCHHHHHHHHHHHHHHc
Q 014408 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNL-----AFLACKDYFSCQKLLREAKRKL 320 (425)
Q Consensus 255 ~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~-----~~~~~~~~~~~~~a~~~~~~~~ 320 (425)
.+.. ....+|... .+.+++|++||||+++|+|.|.+..... ..+..++.++..+++.++|+..
T Consensus 163 ~~~~--dl~f~YR~s-~~~~~~g~~gIIt~v~f~L~p~~~~~~~y~~l~~~l~~~~~~~~~~~v~~~R~~k 230 (357)
T 3i99_A 163 LTME--ECQFGYRDS-IFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHDVYQRVCATRMEK 230 (357)
T ss_dssp EETG--GGCCBTTBC-GGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTCCHHHHHHHHHHHHHHH
T ss_pred EeHH--HcCcccccc-cCCCccCCCEEEEEEEEEEEeCCccccchHHHHhhhccCCHHHHHHHHHHHHhcC
Confidence 8654 222333322 2344557999999999999998642110 0003456777888888887654
No 27
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=99.91 E-value=1.4e-24 Score=210.56 Aligned_cols=230 Identities=20% Similarity=0.189 Sum_probs=160.9
Q ss_pred HHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCC
Q 014408 101 VLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS 180 (425)
Q Consensus 101 ~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~ 180 (425)
++..|++ .++++.|+ +++|+|++||++++ ++|++++|+|||+.+++.+.++|+||++++|++| ++|.
T Consensus 10 ~l~~~tt---~~igg~a~-vv~p~s~edv~~~v------~ipv~v~GgGsnll~~d~~~~~GvVI~l~~~~~I-~vd~-- 76 (268)
T 2gqt_A 10 LLKDYTT---LGVGGPAE-LWTVETREELKRAT------EAPYRVLGNGSNLLVLDEGVPERVIRLAGEFQTY-DLKG-- 76 (268)
T ss_dssp EGGGGSS---SCCCCEEE-EEEECSHHHHHHHT------TSCEEECSSSSSEEECTTCCSSEEEEECGGGGCB-CTTS--
T ss_pred ChHHhcc---cccCcceE-EEEeCCHHHHHHHh------CCCeEEcCCCcCceecCCCcCCeEEEEcCCCCCc-EEcC--
Confidence 4666763 36788888 99999999999999 9999999999999888777666999999999998 5652
Q ss_pred CEEEEecCccHHHHHHHHHhCCCC-cccCCCCcCcceeccccccccCcCCccccc-cccceEeEEEEEecCCceeeccCC
Q 014408 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDMLGT 258 (425)
Q Consensus 181 ~~v~veaGv~~~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~va~nagG~~~~~yG-~~~d~V~~levVl~dG~iv~~~~~ 258 (425)
+|+||++|.+|.+++.++|+. +.+..+.+ +||||++++|+|+ || .++|+|+++++| +||++++++..
T Consensus 77 ---~v~aG~~~~~l~~~~~~~Gl~Gle~~~giP--GtvGGav~~NaGa-----yG~e~~d~v~~v~vv-~~G~v~~~~~~ 145 (268)
T 2gqt_A 77 ---WVGAGTLLPLLVQEAARAGLSGLEGLLGIP--AQVGGAVKMNAGT-----RFGEMADALEAVEVF-HDGAFHVYCPE 145 (268)
T ss_dssp ---EEETTSBHHHHHHHHHHTTEESCGGGTTCC--CBHHHHHHTTCEE-----TTEEGGGGEEEEEEE-ETTEEEEECGG
T ss_pred ---EEECCCCHHHHHHHHHHcCCcCCccccCcc--chhHHHHHhcccc-----CchhHHhheeEEEEE-CCCcEEEEchH
Confidence 999999999999999999995 33333444 4699999999987 99 699999999999 99999998753
Q ss_pred ccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceE-EEeeC---HHH
Q 014408 259 LRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSA-FEFLD---NQS 334 (425)
Q Consensus 259 ~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a-~E~~d---~~~ 334 (425)
....+|+.. ....+ ||||+++|||.|.+ +.++++.++++.++|+.....|++ .=|.| ..+
T Consensus 146 --~l~~~YR~s--~~~~~---gIVt~~~~~L~~~~---------~~~i~~~~~~v~~~R~~~P~~~saGS~FknP~g~~A 209 (268)
T 2gqt_A 146 --ELGFGYRKS--HLPPG---GIVTRVRLKLKERP---------KEEILRRMAEVDRARKGQPKRKSAGCAFKNPPGQSA 209 (268)
T ss_dssp --GSCCBTTBC--CCSTT---CEEEEEEECCEECC---------HHHHHHHHHHHHHHTTTSCSSCSSSCCBCCCTTCCH
T ss_pred --HcccccCCC--CcCCC---ceEEEEEEEEEeCC---------HHHHHHHHHHHHHHHHhCCCCcceEEEEECCCCchH
Confidence 223333332 11122 39999999999974 345566666666665431111222 11344 235
Q ss_pred HHHHHHh-hcCCC---CCCCCCCcceEEEEEecCCChHHHHH
Q 014408 335 MDLVLTY-LEGVR---NPFSSSMHNFYVLIETTGSEESYDRE 372 (425)
Q Consensus 335 ~~~~~~~-~~~~~---~~l~~~~~~~~llie~~g~~~~~~~~ 372 (425)
-.++.+. +++.+ ..+.+ ..+..+|...+.+.+++.+
T Consensus 210 g~LIe~~GlkG~~~G~a~vs~--kha~fivN~g~ata~dv~~ 249 (268)
T 2gqt_A 210 GRLIDERGLKGLRVGDAMISL--EHGNFIVNLGQARAKDVLE 249 (268)
T ss_dssp HHHHHHTTCTTCEETTEEECS--SCTTCEEECSSCCHHHHHH
T ss_pred HHHHHHcCCCCCccCCeEECc--ccCCeEEECCCCCHHHHHH
Confidence 5566553 11221 11222 2334567777666554333
No 28
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=99.90 E-value=4.1e-24 Score=201.65 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=116.8
Q ss_pred EEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceee
Q 014408 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVID 254 (425)
Q Consensus 175 ~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~ 254 (425)
++|+++.+++||||+++.+|+++|.++|+++|.+|++... ||||++++|+|| .+||.. |+|+++++|++||++++
T Consensus 2 ~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~~~~~Pg~~~~-tVGG~v~~nagG---~~yG~~-D~V~~vevV~~dG~i~~ 76 (219)
T 2yvs_A 2 EVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPG-GVGGLVARGGFA---QTFFFP-AEVLGLTFRTPKGRRVR 76 (219)
T ss_dssp EEETTTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTT-HHHHHHHTTCSS---BSSCGG-GGEEEEEEECTTSCEEE
T ss_pred eEcCCCCEEEEcCCCcHHHHHHHHHHcCCEEeccCCCCCC-chhheeccCccc---ccCCCc-cEEEEEEEEeCCCCEEE
Confidence 7899999999999999999999999999999998986665 999999999998 889999 99999999999999999
Q ss_pred ccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCH
Q 014408 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (425)
Q Consensus 255 ~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~ 306 (425)
++....|+..||||+++++|++|+|||||+++||+.|.|+.....++.+.++
T Consensus 77 ~~~~~~kn~~gydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~~~~~~~~~~~ 128 (219)
T 2yvs_A 77 AGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSF 128 (219)
T ss_dssp EECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSC
T ss_pred ECCccccCCCCcchHHHhccCCCceEEEEEEEEEEEECCcccEEEEEecCCH
Confidence 9887778889999999999999999999999999999998877766665543
No 29
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=98.61 E-value=7.9e-08 Score=93.78 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=96.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC--ccccCCeEEEEeCC---CCCeeEEeCCCCEEEEecCccH
Q 014408 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (425)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~--~~~~~~gvvIdls~---ln~I~~id~~~~~v~veaGv~~ 191 (425)
+--+++|+|.+|+.++++.. +.+..+.||||++.-. ......+++||+++ |+.| +. +++.++++||+++
T Consensus 5 ~~~~~~P~s~~ea~~ll~~~---~~~~~ilaGGT~ll~~~~~~~~~~~~lIdl~~i~eL~~i-~~--~~~~l~iGA~~tl 78 (287)
T 1ffv_C 5 RFEYHAPKSVGEAVALLGQL---GSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGI-RE--EGSTVVIGAMTVE 78 (287)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCE-EE--ETTEEEEETTCBH
T ss_pred cceEECCCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Ee--cCCEEEEccCCcH
Confidence 34588999999999999853 3578999999996321 10012478999985 6666 44 3456999999999
Q ss_pred HHHHHH-HHhCCCCc-------ccCCCCcCcceeccccccccCcCCccccccccceEe----EEEEEecCCceeeccCCc
Q 014408 192 ENLVSF-LDDHGFIM-------PLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGDVIDMLGTL 259 (425)
Q Consensus 192 ~~L~~~-l~~~Gl~l-------p~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~----~levVl~dG~iv~~~~~~ 259 (425)
.+|.+. +.++++.. --.+...+.+||||++++|++. +.+...++ .+++..++| ..+....
T Consensus 79 ~~l~~~~~~~~~~~~L~~a~~~~a~~qiRN~gTvGGni~~~~~~------~D~~~~l~Al~A~v~~~~~~G-~r~i~~~- 150 (287)
T 1ffv_C 79 NDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPG------NDHPALSIAVEAHFVLEGPNG-RRTVPAD- 150 (287)
T ss_dssp HHHHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCTT------CSHHHHHHHTTCEEEEEETTE-EEEEEST-
T ss_pred HHHhhChHHHHHhHHHHHHHHHhCCHHHhcceechhhhccCCCc------HHHHHHHHHcCcEEEEEcCCc-eEEEEHH-
Confidence 999963 33333321 1123334568999999998652 23332222 578888998 3333221
Q ss_pred cCCCCCCCchhhhhcC-CCCceEEEEEEEEcccC
Q 014408 260 RKDNTGYDLKHLFIGS-EGSLGIVTKVSIHTPPK 292 (425)
Q Consensus 260 ~k~~~g~dL~~~~~Gs-~GtlGIIT~~tlkl~p~ 292 (425)
|++....-+ -..-.|||+++|.+.+.
T Consensus 151 -------df~~g~~~t~l~~~eii~~i~ip~~~~ 177 (287)
T 1ffv_C 151 -------GFFLGTYMTLLEENEVMVEIRVPAFAQ 177 (287)
T ss_dssp -------TTEEETTEESCCTTCEEEEEEEECCCT
T ss_pred -------HHhcCcccccCCCCCEEEEEEecCCCC
Confidence 222111100 01125899999987653
No 30
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.96 E-value=4.6e-06 Score=86.43 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=82.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC--ccccCCeEEEEeCC---CCCeeEEeCCCCEEEEecCc
Q 014408 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGC 189 (425)
Q Consensus 115 ~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~--~~~~~~gvvIdls~---ln~I~~id~~~~~v~veaGv 189 (425)
+....+++|+|.+|+.++++.. . +..+.||||++.-. ......+++||+++ |+.| +.+ ++.++++||+
T Consensus 175 G~a~~y~~P~sl~ea~~ll~~~---~-~a~ilaGGT~L~~~~k~~~~~~~~lIdl~~i~eL~~I-~~~--~~~l~IGA~v 247 (462)
T 2w3s_A 175 GQTAPAFLPETSDALADWYLAH---P-EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQI-RET--PDGYGIGAGV 247 (462)
T ss_dssp ----CCBCCSSHHHHHHHHHHC---T-TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCE-EEE--TTEEEEETTC
T ss_pred CCccEEEecCCHHHHHHHHhhC---C-CCEEEeCCchhhhhhhccCCCCCEEEEcCCChhhCcE-EEc--CCEEEEccCC
Confidence 4445678999999999998753 2 46778999998421 00113468999998 5666 444 4569999999
Q ss_pred cHHHHHHHHHhCCCC-c------ccCCCCcCcceeccccccccCcCCccccccccceEe----EEEEEecCC
Q 014408 190 ILENLVSFLDDHGFI-M------PLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANG 250 (425)
Q Consensus 190 ~~~~L~~~l~~~Gl~-l------p~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~----~levVl~dG 250 (425)
++.+|.+.+. ..+. + --.+...+.+||||+|++++. .+.+...++ .+++..++|
T Consensus 248 tl~~l~~~l~-~~~p~L~~a~~~ia~~qIRN~gTvGGNl~~~sp------~sD~~~~L~ALdA~v~l~~~~G 312 (462)
T 2w3s_A 248 TIAALRAFAE-GPHPALAGLLRRFASEQVRQVATIGGNIANGSP------IGDGPPALIAMGASLTLRRGQE 312 (462)
T ss_dssp BHHHHHHHHT-TTCHHHHHHHTTSSCHHHHTTCBHHHHHHHTCT------TCSHHHHHHHTTCEEEEEBTTB
T ss_pred cHHHHHHHHH-HHhHHHHHHHHHhCChhheeeEEcccccccCCC------cchHHHHHHHcCCEEEEEeCCc
Confidence 9999998843 3332 1 112333456899999999873 355666666 778888888
No 31
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=97.94 E-value=1.6e-05 Score=77.34 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=91.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC--ccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHH
Q 014408 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (425)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~--~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L 194 (425)
+--+++|+|.+|+.++++.. +-+..+.||||++.-. .......++||++++..+..+..+++.++++|++++.++
T Consensus 5 ~~~~~~P~sl~ea~~ll~~~---~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~~t~~~l 81 (288)
T 1n62_C 5 SFDYHRPKSIADAVALLTKL---GEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHAL 81 (288)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCEEEETTEEEEETTCBHHHH
T ss_pred ceEEECcCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcceEecCCEEEEccCCcHHHH
Confidence 34588999999999998643 3457889999996221 000134789999875333233334567999999999999
Q ss_pred HH--HHHhCC--C-----CcccCCCCcCcceeccccccccCcCCccccccccceEe-------EEEEEecCCceeeccCC
Q 014408 195 VS--FLDDHG--F-----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDMLGT 258 (425)
Q Consensus 195 ~~--~l~~~G--l-----~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~-------~levVl~dG~iv~~~~~ 258 (425)
.+ .+.++- + .+. +|...+.+||||+++++. ...|.+. .+++..++|+ .+.
T Consensus 82 ~~~~~~~~~~p~L~~a~~~ia-~~qiRN~gTiGGnl~~a~---------p~sD~~~~L~Al~A~v~l~~~~G~-r~v--- 147 (288)
T 1n62_C 82 IGSDFLAAKLPIIRETSLLIA-DPQIRYMGTIGGNAANGD---------PGNDMPALMQCLGAAYELTGPEGA-RIV--- 147 (288)
T ss_dssp HHCHHHHHHCHHHHHHHTTSS-CHHHHHHCBHHHHHHSCC---------TTCSHHHHHHHHTCEEEEEETTEE-EEE---
T ss_pred hcChHHHHHHHHHHHHHHHhC-CHHHHccccccchhccCC---------CchHHHHHHHHhCcEEEEEeCCcc-EEE---
Confidence 95 444321 1 111 233345679999999873 2344433 5667778873 222
Q ss_pred ccCCCCCCCchhhhhcCC----CCceEEEEEEEEccc
Q 014408 259 LRKDNTGYDLKHLFIGSE----GSLGIVTKVSIHTPP 291 (425)
Q Consensus 259 ~~k~~~g~dL~~~~~Gs~----GtlGIIT~~tlkl~p 291 (425)
.+.+++.|-. ..--|||++.|...+
T Consensus 148 --------~~~df~~g~~~t~l~~~eil~~i~ip~~~ 176 (288)
T 1n62_C 148 --------AARDYYQGAYFTAIEPGELLTAIRIPVPP 176 (288)
T ss_dssp --------EHHHHEEETTEESCCTTCEEEEEEEECCC
T ss_pred --------EHHHHhcCcccccCCCCCEEEEEEeCCCC
Confidence 1222333221 112579999987654
No 32
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=97.87 E-value=3.3e-05 Score=75.78 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=83.1
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc--cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCcc
Q 014408 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCI 190 (425)
Q Consensus 113 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~--~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~ 190 (425)
+++.+..+++|+|.+|..++++.. . ...+.+|||++.-.. ......++||++++..+..|..+++.++++|+++
T Consensus 6 ~~g~~~~y~~P~sl~ea~~ll~~~---~-~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt 81 (305)
T 3nvz_B 6 FEGERVTWIQASTLKELLDLKAQH---P-EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACA 81 (305)
T ss_dssp EECSSCEEEECCSHHHHHHHHHHC---T-TCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCB
T ss_pred ecCCCeEEEccCCHHHHHHHHHhC---C-CCEEEECccHHHHHHhcCCCCCCEEEECCCChhhcceEECCCeEEEccCCc
Confidence 456678899999999999987542 2 246789999973110 0012368999997554433444566899999999
Q ss_pred HHHHHHHHHhC-------------CC----CcccCCCCcCcceeccccccccCcCCccccccccceEe----EEEEEecC
Q 014408 191 LENLVSFLDDH-------------GF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLAN 249 (425)
Q Consensus 191 ~~~L~~~l~~~-------------Gl----~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~----~levVl~d 249 (425)
+.++.+.+.++ .+ ..--+|...+.+||||+++++.. .+.+.-.++ .+++..++
T Consensus 82 ~~~l~~~~~~~~~~~p~~~~~~~p~L~~a~~~ia~~qiRN~aTiGGNl~~a~p------~sD~~~~L~AldA~v~l~~~~ 155 (305)
T 3nvz_B 82 LSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASP------ISDLNPVFMASGTKLTIVSRG 155 (305)
T ss_dssp HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCCT------TCSSHHHHHHHTCEEEEEETT
T ss_pred HHHHHHHHHhhhcccchhhhhhhHHHHHHHHHhCCHHHhCeeechheeCCCCC------chHHHHHHHHcCCEEEEEcCC
Confidence 99999876532 00 01113344567899999998754 233222222 46677788
Q ss_pred Cc
Q 014408 250 GD 251 (425)
Q Consensus 250 G~ 251 (425)
|+
T Consensus 156 G~ 157 (305)
T 3nvz_B 156 TR 157 (305)
T ss_dssp EE
T ss_pred Cc
Confidence 84
No 33
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=97.47 E-value=0.00013 Score=71.05 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=77.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc--cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHH
Q 014408 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (425)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~--~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L 194 (425)
+--+++|+|.+|+.++++. + -...+.+|||++.-.. .......+||++++..+..|..+++.++++|+|++.++
T Consensus 5 ~f~y~~P~sl~ea~~ll~~---~-~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l 80 (288)
T 1t3q_C 5 AFSYRAPASLQEVIQVLAD---D-PDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRN 80 (288)
T ss_dssp CCEEECCSSHHHHHHHHHH---C-TTCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEEETTCBHHHH
T ss_pred CceEECCCCHHHHHHHHhh---C-CCCEEEeCchhHHHHHhcCCCCCCEEEECCCChhhcCeEEcCCEEEEcCCCcHHHH
Confidence 4458899999999999873 2 2356679999952110 00123689999985433333335567999999999999
Q ss_pred HH--HHHhCC-------CCcccCCCCcCcceeccccccccCcCCccccccccceEe-------EEEEEecCCc
Q 014408 195 VS--FLDDHG-------FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGD 251 (425)
Q Consensus 195 ~~--~l~~~G-------l~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~~d~V~-------~levVl~dG~ 251 (425)
.+ .+.++- ..+. +|...+.+|+||++++... ..|... .+++..++|+
T Consensus 81 ~~~~~~~~~~p~L~~a~~~ia-s~qiRN~aTiGGNi~~a~p---------~sD~~~~L~Al~A~v~l~~~~g~ 143 (288)
T 1t3q_C 81 KTDPTVAKCVPILPKVLAHVA-HQAVRNRGTLGGSLAHADA---------GAEMPFLMATLGATMYIASSAGV 143 (288)
T ss_dssp HHCHHHHHHCTHHHHHHTTSS-CHHHHTTCBHHHHHHHTCT---------TCHHHHHHHHTTCEEEEEETTEE
T ss_pred hcCHHHHHHHHHHHHHHHHhC-CHHHHcceechhhcccCCC---------cHHHHHHHHHcCcEEEEEcCCce
Confidence 86 343321 1122 3445667899999985421 345444 5666777774
No 34
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=96.97 E-value=0.00028 Score=68.84 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=67.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCC-cEEEeCCCCCCCCCc--cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHH
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLL-AVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~i-pv~~rGgGt~~~g~~--~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L 194 (425)
--+++|+|.+|..++++. ++- ...+.+|||++.-.- .......+||++++..+..|..+++.++++|++++.++
T Consensus 4 f~y~~P~sl~ea~~ll~~---~~~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l 80 (296)
T 3hrd_C 4 FEFFAPKTLEEAKGLLHQ---YKDVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFTQI 80 (296)
T ss_dssp CEEECCSSHHHHHHHHHH---TTTSCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHHHH
T ss_pred eeEeCCCCHHHHHHHHHh---CCCCCeEEEECCcHHHHHhhcCCCCCCeEEEcccChhhcceEEcCCeEEEccCCcHHHH
Confidence 457899999999988763 332 356679999973210 01134689999986544344445678999999999999
Q ss_pred HHH--HHh-------CCCCcccCCCCcCcceeccccccc
Q 014408 195 VSF--LDD-------HGFIMPLDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 195 ~~~--l~~-------~Gl~lp~~pgs~~~~tvGG~va~n 224 (425)
.+. +.+ .-..+. +|...+.+||||+|++.
T Consensus 81 ~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~a 118 (296)
T 3hrd_C 81 ENHPFIRSHVRALYKAASQVG-SPQIRNLGTIGGNLSTS 118 (296)
T ss_dssp HHCHHHHHHCHHHHHHHHTSS-CHHHHHHCBHHHHHHHT
T ss_pred HhChhhhhHhHHHHHHHHHhC-CHHHhcceehhhhhccC
Confidence 742 111 101122 34445678999999864
No 35
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=95.73 E-value=0.0043 Score=61.21 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=64.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC--ccccCCeEEEEeCCCCCeeEEeCC-CCEEEEecCccHHHH
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGSMNNIITFDKG-SGVLVCEAGCILENL 194 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~--~~~~~~gvvIdls~ln~I~~id~~-~~~v~veaGv~~~~L 194 (425)
--+++|+|.+|..++++ +. .-.+.+|||++.-. ..-.....+||++++..+..|..+ ++.++++|++++.++
T Consensus 7 f~y~~P~sl~ea~~ll~---~~--~a~~lAGGT~l~~~~k~~~~~p~~lIdi~~i~eL~~I~~~~~~~l~IGA~vt~~~l 81 (324)
T 1rm6_B 7 FRTHRPATLADAVNALA---AE--ATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLADGSLRIGAGATLEAI 81 (324)
T ss_dssp CEEECCSSHHHHHHHTT---ST--TEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCEEECTTSCEEEETTCBHHHH
T ss_pred eEEEccCCHHHHHHHHh---CC--CCEEEECchhHHHHHhccCCCCCEEEECCCChhhcceEECCCCeEEEccCCcHHHH
Confidence 35889999999999886 22 36678999986211 000134689999886433333332 336899999999999
Q ss_pred HHH--HHhC-------CCCcccCCCCcCcceecccccc
Q 014408 195 VSF--LDDH-------GFIMPLDLGAKGSCQIGGNVST 223 (425)
Q Consensus 195 ~~~--l~~~-------Gl~lp~~pgs~~~~tvGG~va~ 223 (425)
.+. +.++ =..+. +|...+.+||||++++
T Consensus 82 ~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNl~~ 118 (324)
T 1rm6_B 82 AEHDAIRTTWPALAQAAESVA-GPTHRAAATLGGNLCQ 118 (324)
T ss_dssp HHCHHHHHHSHHHHHHHHHSS-CHHHHHHCBHHHHHTC
T ss_pred HhChHHHHHHHHHHHHHHHhC-CHHHcceeEeeeeccc
Confidence 864 2211 00121 3455677899999974
No 36
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=95.15 E-value=0.033 Score=64.47 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc--cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHH
Q 014408 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILE 192 (425)
Q Consensus 115 ~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~--~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~ 192 (425)
+.+.-+++|.|.+|+.++++. +. .-.+.+|||++.-.- -.....++||++++..+..|..++..++++|++++.
T Consensus 231 ~~~~~~~~P~sl~ea~~ll~~---~~-~a~lvaGgT~l~~~~k~~~~~~~~lIdl~~i~EL~~I~~~~~~l~IGA~vtl~ 306 (1332)
T 3unc_A 231 GERVTWIQASTLKELLDLKAQ---HP-EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALS 306 (1332)
T ss_dssp CSSCEEEECCSHHHHHHHHHH---CT-TCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCBHH
T ss_pred CCceEEEccCCHHHHHHHHhh---CC-CCEEEEeCcHHHHHhhcCCCCCCeEEEcCCCHHhCceEEeCCEEEEEecChHH
Confidence 445679999999999998763 21 235678999862100 001235799999865443444456679999999999
Q ss_pred HHHHHHHhC----C---------C-----CcccCCCCcCcceecccccccc
Q 014408 193 NLVSFLDDH----G---------F-----IMPLDLGAKGSCQIGGNVSTNA 225 (425)
Q Consensus 193 ~L~~~l~~~----G---------l-----~lp~~pgs~~~~tvGG~va~na 225 (425)
+|.+.+.+. . + .+. .|...+.+||||+|++..
T Consensus 307 ~l~~~l~~~~~~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~as 356 (1332)
T 3unc_A 307 SVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFA-GKQVKSVASLGGNIITAS 356 (1332)
T ss_dssp HHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSS-CHHHHHHCBHHHHHHHCC
T ss_pred HHHHHHHHHhhhccccccchhHHHHHHHHHhC-CHHHhceeeccceecccC
Confidence 999876432 0 0 111 334456689999998754
No 37
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=86.17 E-value=0.23 Score=57.70 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=66.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC--CccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHH
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVG--GSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g--~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~ 195 (425)
...+.|.|.+|+.++...-- +.+ ...|||.+.- ..-...-.++||+.+...+..+...+..++++|+|++.++.
T Consensus 241 ~~w~~P~tl~el~~l~~~~p--~a~--lvaGnT~~gl~~~~~~~~~~~~I~~~~v~EL~~i~~~~~~l~IGA~vtls~~~ 316 (1335)
T 3zyv_A 241 TTWIAPGTLNDLLELKMKHP--SAP--LVIGNTYLGLHMKFTDVSYPIIISPARILELFVVTNTKQGLTLGTGLSLTQVK 316 (1335)
T ss_dssp CEEEECSSHHHHHHHHHHCT--TSC--BCSSCTTHHHHHC--CCCCSEEECCTTCGGGSCEECCTTEEEEETTCBHHHHH
T ss_pred ceEecCCCHHHHHHHHHHCC--CCe--EEEecccceeeEeecCCCCCeEEEcCcchhHheEEecCCEEEEcccCcHHHHH
Confidence 45789999999999865322 222 3467777410 00111235889988766555566667789999999999999
Q ss_pred HHHHhCCCC------------------cccCCCCcCcceeccccccc
Q 014408 196 SFLDDHGFI------------------MPLDLGAKGSCQIGGNVSTN 224 (425)
Q Consensus 196 ~~l~~~Gl~------------------lp~~pgs~~~~tvGG~va~n 224 (425)
+.|.+.--. |. .+...+.+||||||++.
T Consensus 317 ~~l~~~~~~~~~~~~~~~~~l~~~l~~fA-s~qIRN~aTigGNI~~a 362 (1335)
T 3zyv_A 317 NVLSDVVSRLPKEKTQIYCALLKQLKTLA-GQQIRNVASLGGHIISR 362 (1335)
T ss_dssp HHHHHHHTTSCTTTCTTHHHHHHHHTTSS-CHHHHHHCBHHHHHHTC
T ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHhc-chhhcCcccccCceecc
Confidence 888642100 11 12345668999999864
No 38
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=42.34 E-value=50 Score=27.15 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=36.0
Q ss_pred HHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcE-EEeCCC
Q 014408 103 LAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (425)
Q Consensus 103 ~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~rGgG 149 (425)
..+...| ...+.|..|++..+++|+.++.+.|.+.|+|. .++-+|
T Consensus 43 ~~~~~~W--~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 88 (120)
T 1xty_A 43 KEWLNEW--LHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAG 88 (120)
T ss_dssp HHHHHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4455566 35688999999999999999999999999996 445444
No 39
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=40.03 E-value=43 Score=27.88 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=34.4
Q ss_pred hhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcE-EEeCCCC
Q 014408 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (425)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~rGgGt 150 (425)
...| ...+.+..|++..+++|+.++.+.|.+.|+|. .++-.|.
T Consensus 40 l~~W--~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~DAG~ 83 (123)
T 1rzw_A 40 RRKW--LDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGL 83 (123)
T ss_dssp HHHT--GGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3455 34677899999999999999999999999996 4565553
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=35.52 E-value=69 Score=24.42 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=35.1
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|..+|. .+|-|.++.+...+.-.....+++.|.+.+++.+|+..+.
T Consensus 30 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 30 EDVLRLFQ----PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 35666663 5677889888766644445678899999999998887653
No 41
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=35.31 E-value=66 Score=24.67 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+|+..+
T Consensus 44 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 44 ADIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp HHHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 35666664 467888888877764445567889999999999988765
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.58 E-value=74 Score=24.07 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=34.6
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+|. .+|-|.++.+...+.-.....+++.|.+.+++.+|+..+
T Consensus 32 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 32 EELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 46666663 467788888876663344567889999999998888765
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=33.04 E-value=86 Score=24.08 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=40.7
Q ss_pred cCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCC-cceeEEEEEcCCHHHHHHHHHHH
Q 014408 248 ANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 248 ~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p-~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|+-+-++. ++.+.+.-+|..+|. .+|-|.++.+-..+.. .....+++.|.+.+++.+|+..+
T Consensus 17 ~~gt~lfV~n-Lp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 17 FQGTNLIVNY-LPQNMTQDELRSLFS----SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CCCSEEEEES-CCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHH----hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 3454444332 223334446777774 4677888887655442 34456789999999999988775
No 44
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=32.04 E-value=83 Score=24.74 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=43.3
Q ss_pred CchhhhhcCCCCceEEEEEEEEcccC--CcceeEEEEEcCCHHHHHHHHHHHHH-HcCCCceEEEeeCHH
Q 014408 267 DLKHLFIGSEGSLGIVTKVSIHTPPK--LSSVNLAFLACKDYFSCQKLLREAKR-KLGEILSAFEFLDNQ 333 (425)
Q Consensus 267 dL~~~~~Gs~GtlGIIT~~tlkl~p~--p~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~p~a~E~~d~~ 333 (425)
||...| +.+|-|+++.+-..|. +.....+++.|.+.++|.+|+..+-. ..+..+-.+++.+..
T Consensus 29 dl~~~f----~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 29 ETKEEC----EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLD 94 (105)
T ss_dssp HHHHHG----GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred HHHHHH----HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHH
Confidence 455544 4678899998865543 23456788999999999999888742 234446677887753
No 45
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=31.81 E-value=68 Score=23.89 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+|+..+
T Consensus 31 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 31 EILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 36666663 467899988876665445567889999999998888765
No 46
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=31.46 E-value=66 Score=26.06 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCceEEEEEEEEcccC-----CcceeEEEEEcCCHHHHHHHHHHHHH-HcCCCceEEEeeCHHHH
Q 014408 277 GSLGIVTKVSIHTPPK-----LSSVNLAFLACKDYFSCQKLLREAKR-KLGEILSAFEFLDNQSM 335 (425)
Q Consensus 277 GtlGIIT~~tlkl~p~-----p~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~p~a~E~~d~~~~ 335 (425)
+.+|-|+++.+-..+. ++.....++.|.+.++|.+|+..+-. ..+..+-.++|.+....
T Consensus 47 ~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 47 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 111 (118)
T ss_dssp TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhc
Confidence 5789999998865443 23345678999999999999888741 23445667888886433
No 47
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.31 E-value=90 Score=24.13 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|..+|. .+|-|.++.+...+.-.....+++.|.+.+++.+|+..+.
T Consensus 30 ~~l~~~f~----~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 30 KKLKEVFS----MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 46666663 5678888888766644445678899999999999887663
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=30.16 E-value=91 Score=24.55 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccC-CcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~-p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|..+| ..+|-|.++.+-..+. -.....+++.|.+.+++.+|+..+-
T Consensus 21 ~~L~~~F----~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 21 TFLKDMC----RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHH----HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 4677766 3578899998877665 3345678899999999999887763
No 49
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=30.02 E-value=89 Score=25.67 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=33.6
Q ss_pred hhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcE-EEeCCC
Q 014408 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (425)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~rGgG 149 (425)
...| ...+.|..|++..+++|+.++.+.|.+.|+|. .++-.|
T Consensus 47 ~~~W--~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 89 (121)
T 1wn2_A 47 FEAW--FREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAG 89 (121)
T ss_dssp HHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3445 35678999999999999999999999999996 344444
No 50
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=28.49 E-value=72 Score=26.06 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=32.0
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCcE-EEeCCCC
Q 014408 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (425)
Q Consensus 113 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~rGgGt 150 (425)
..+.|..|++..+++|+.++.+.|.+.|+|. .++-.|+
T Consensus 48 ~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~ 86 (117)
T 1rlk_A 48 DEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGY 86 (117)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred HCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5678999999999999999999999999996 4455443
No 51
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=27.91 E-value=86 Score=24.50 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=30.5
Q ss_pred CCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 277 GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
+.+|-|+++.+...+.......+++.|.+.+++.+|+..+-
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHC
Confidence 35788999988544333446678899999999999887763
No 52
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=27.73 E-value=64 Score=25.38 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=40.3
Q ss_pred CCceEEEEEEEEcccC---CcceeEEEEEcCCHHHHHHHHHHHHH-HcCCCceEEEeeCHHHH
Q 014408 277 GSLGIVTKVSIHTPPK---LSSVNLAFLACKDYFSCQKLLREAKR-KLGEILSAFEFLDNQSM 335 (425)
Q Consensus 277 GtlGIIT~~tlkl~p~---p~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~p~a~E~~d~~~~ 335 (425)
+.+|-|+++.+-..+. +.....+++.|.+.++|.+|+.++-. ..+..+-.++|.|....
T Consensus 37 ~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 37 SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHH
Confidence 4678899997733221 12345678999999999999888742 23445677888887543
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.48 E-value=1.2e+02 Score=22.97 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=33.5
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|..+| ..+|-|.++.+... .-.....+++.|.+.+++.+|+..+.
T Consensus 30 ~~l~~~F----~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 30 ERLRKAF----SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp HHHHHTT----TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHH----HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 3566655 35777888887655 33345678899999999999887653
No 54
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=25.98 E-value=40 Score=33.13 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
=|.+|+.+|+++|+++||.|+|- -=||.
T Consensus 92 YT~~di~eiv~YA~~rgI~VIPEID~PGH~ 121 (367)
T 1yht_A 92 LSYRQLDDIKAYAKAKGIELIPELDSPNHM 121 (367)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEEEESSSC
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 48999999999999999999985 44554
No 55
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=25.93 E-value=71 Score=26.02 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=31.2
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCcE-EEeCCC
Q 014408 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (425)
Q Consensus 113 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~rGgG 149 (425)
..+.|..|++..+++|+.++.+.|.+.|+|. .++-+|
T Consensus 46 ~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~DAG 83 (115)
T 2zv3_A 46 REGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAG 83 (115)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5678999999999999999999999999986 344444
No 56
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=57 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=26.2
Q ss_pred chhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHH
Q 014408 268 LKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLR 314 (425)
Q Consensus 268 L~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~ 314 (425)
|...+...-..+|-|+.+++-.-. .++.|.+-+++.+|+.
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh
Confidence 333344444568878888774432 6889999888777764
No 57
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.55 E-value=1.4e+02 Score=23.07 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=33.7
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+| ..+|-|..+.+...+.......+++.|.+.+++.+|+..+
T Consensus 40 ~~l~~~F----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 40 QELENML----KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp HHHHHTT----TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3555555 3567788888866653344567889999999998888765
No 58
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.42 E-value=1.4e+02 Score=21.98 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=34.2
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCC-cceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p-~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+|. .+|-|.++.+...+.. .....+++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 30 RDLREVFS----KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp HHHHHHHH----TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 36666663 4677888888666553 34557889999999999888765
No 59
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=23.62 E-value=1.1e+02 Score=24.08 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 264 TGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 264 ~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
+.-+|..+|. .+|-|.++.+-..+. .....+++.|.+.+++.+|+..+.
T Consensus 18 te~~L~~~F~----~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 18 DNKALYDTFS----AFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp CHHHHHHHHG----GGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHh----ccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcC
Confidence 3346777773 467888888755432 234567899999999999887753
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=23.28 E-value=71 Score=24.91 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=34.8
Q ss_pred CCCCchhhhhcCCCCceEEEEEEEEcccCC-cceeEEEEEcCCHHHHHHHHHHH
Q 014408 264 TGYDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 264 ~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p-~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
+..+|..+|. .+|-|.++.+...+.. .....+++.|.+.+++.+|+..+
T Consensus 38 t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 38 GDQDLLQMFM----PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp CHHHHHHHHG----GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 3346777664 4677888887665532 34456889999999999988775
No 61
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=22.59 E-value=1.1e+02 Score=23.95 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=31.9
Q ss_pred CCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 263 ~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+-.+|..+|. .+|-|+.+.+... ..+++.|.+.+++.+|+..+
T Consensus 28 ~t~~~l~~~F~----~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 28 GSWQDLKDHMR----EAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp CCTTHHHHHHG----GGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----hcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHh
Confidence 34457877774 4567888876322 56789999999999988765
No 62
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.30 E-value=1.3e+02 Score=23.27 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=27.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 014408 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTG 151 (425)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~ 151 (425)
.++-...|.+|+.++++-.+.+|-|+++.-.|.+
T Consensus 29 ryirtatssqdirdiiksmkdngkplvvfvngas 62 (112)
T 2lnd_A 29 RYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGAS 62 (112)
T ss_dssp TTEEEECSHHHHHHHHHHHTTCCSCEEEEECSCC
T ss_pred ceeeeccchhhHHHHHHHHHhcCCeEEEEecCcc
Confidence 3456678999999999999999999988765544
No 63
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=21.91 E-value=26 Score=25.10 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEeCC
Q 014408 123 PRTTNEVSQILKYCNSRLLAVVPQGG 148 (425)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~rGg 148 (425)
|...++-++|-.||+++|.+|..||-
T Consensus 9 ~~~~~~~~aIR~WAr~nG~~VsdRGR 34 (55)
T 2kng_A 9 AIDREQSAAIREWARRNGHNVSTRGR 34 (55)
T ss_dssp CCSSTHHHHHHHHHHHTTCCCCSSSC
T ss_pred CCCccChHHHHHHHHHcCCcCCCCCC
Confidence 33444788999999999999988873
No 64
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.63 E-value=1.1e+02 Score=23.17 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=33.1
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+|.. .+|-|.++.+...+.-.....+++.|.+.+++.+|+..+
T Consensus 24 ~~l~~~F~~---~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 24 GMLYEFFVK---VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp HHHHHHHHH---HCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHH---hCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHc
Confidence 366666642 146678888766553334567889999999998888765
No 65
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=21.25 E-value=1.8e+02 Score=20.98 Aligned_cols=47 Identities=9% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCC-cceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p-~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+|. .+|-|.++.+...+.. .....+++.|.+.+++.+|+..+
T Consensus 21 ~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 21 AAIAAAFA----PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 46666663 4677888887655432 34557889999999999988765
No 66
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=21.16 E-value=56 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEe--CCCCC
Q 014408 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (425)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~r--GgGt~ 151 (425)
=|.+|+.+|+++|+++||.|+|- -=||.
T Consensus 92 YT~~di~eIv~YA~~rgI~VIPEID~PGH~ 121 (442)
T 2yl5_A 92 LTQAEVTELIEYAKSKDIGLIPAINSPGHM 121 (442)
T ss_dssp BCHHHHHHHHHHHHTTTCEEEEEEEESSSC
T ss_pred cCHHHHHHHHHHHHHcCCeeeeecccchhH
Confidence 38999999999999999999985 44554
No 67
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=21.08 E-value=1.7e+02 Score=21.78 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCc
Q 014408 179 GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (425)
Q Consensus 179 ~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG 227 (425)
.++...|.+.+.+.++++.+ |+.+|. ...-|+||++....|.
T Consensus 7 ~dg~~~v~G~~~l~dl~~~l---~~~l~~----~~~~Tl~G~i~~~lg~ 48 (83)
T 3llb_A 7 PSGDFIVKALTPVDAFNDFF---GSEFSD----EEFDTVGGLVMSAFGH 48 (83)
T ss_dssp TTSCEEEETTCBHHHHHHHH---CCCCCT----TTCSBHHHHHHHHHSS
T ss_pred CCCEEEEEccCCHHHHHHHh---CCCCCC----CCCcCHHHHHHHHhCc
Confidence 34567899999999999886 455652 2356899999876543
No 68
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=20.89 E-value=1.4e+02 Score=24.01 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=35.3
Q ss_pred CchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 267 dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+|+..+.
T Consensus 16 ~l~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 16 ILKQYFQ----VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp HHHHHHG----GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHH----hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 5666663 4677999988776665566778999999999999887653
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=20.88 E-value=1.6e+02 Score=22.31 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCC-cceeEEEEEcCCHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p-~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|..+|. .+|-|.++.+...+.. .....+++.|.+.+++..|+..+.
T Consensus 38 ~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 38 EDIHDKFA----EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred HHHHHHHh----ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 35666663 4678888888665542 345678899999999988887653
No 70
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=20.72 E-value=1.7e+02 Score=20.83 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=33.3
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCC-cceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p-~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+| ..+|-|.++.+...+.. .....+++.|.+.+++.+|+..+
T Consensus 16 ~~l~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 16 ETLRNAF----KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp HHHHHHH----TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 3566666 34677888887665443 34567889999999998888765
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.61 E-value=1.7e+02 Score=21.54 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCC-cceeEEEEEcCCHHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p-~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
.+|..+| ..+|-|.++.+...+.. .....+++.|.+.+++.+|+..+.
T Consensus 20 ~~l~~~f----~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 20 DMLRGIF----EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp HHHHHHH----TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred HHHHHHH----HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 3566666 34677888888665542 234578899999999998887653
No 72
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.44 E-value=1.5e+02 Score=22.39 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (425)
Q Consensus 266 ~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~ 316 (425)
.+|..+|. .+|-|.++.+...+.. ....+++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~f~----~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 30 PDLRQMFG----QFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp HHHHHHGG----GTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHh
Confidence 36666663 4677888887655433 4557889999999999888765
No 73
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=20.08 E-value=2e+02 Score=21.33 Aligned_cols=41 Identities=10% Similarity=0.253 Sum_probs=30.5
Q ss_pred CCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCc
Q 014408 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (425)
Q Consensus 180 ~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG 227 (425)
++...|.+.+.+.++++.+ |+.+|. ...-|+||++....|.
T Consensus 8 dg~~~v~g~~~l~dl~~~l---~~~l~~----~~~~Tl~G~i~~~lg~ 48 (81)
T 3lae_A 8 DGSMIIDGSANLRDLNKMF---NWELDT----EDARTFNGLILEHLEE 48 (81)
T ss_dssp TSCEEEETTCBHHHHHHHH---CCCCCC----SSCSBHHHHHHHHCSS
T ss_pred CCEEEEEeeCCHHHHHHHh---CCCCCC----CCCccHHHHHHHHhCC
Confidence 4557899999999999886 455652 2356899999876554
No 74
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=20.01 E-value=1.6e+02 Score=24.09 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=34.6
Q ss_pred CchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHHH
Q 014408 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (425)
Q Consensus 267 dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~~ 317 (425)
+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+|+..+.
T Consensus 111 ~l~~~F~----~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 111 DIRVMFS----SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp HHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHH----hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 5666663 4677888888665544445668899999999999987764
Done!