Query 014409
Match_columns 425
No_of_seqs 184 out of 585
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lzd_A DPH2; diphthamide biosy 100.0 4.4E-81 1.5E-85 628.3 30.3 272 1-307 87-358 (378)
2 1byk_A Protein (trehalose oper 81.0 3.2 0.00011 37.5 7.0 77 208-285 2-84 (255)
3 3hs3_A Ribose operon repressor 78.2 4.4 0.00015 37.2 7.0 78 205-285 7-90 (277)
4 3ixl_A Amdase, arylmalonate de 76.2 8.1 0.00028 35.8 8.2 81 205-291 114-216 (240)
5 3kke_A LACI family transcripti 73.5 4.6 0.00016 37.7 5.8 75 207-284 14-98 (303)
6 3cs3_A Sugar-binding transcrip 72.1 4.9 0.00017 36.8 5.6 63 206-270 6-68 (277)
7 3egc_A Putative ribose operon 70.9 4.8 0.00016 37.1 5.3 79 205-284 5-91 (291)
8 3o74_A Fructose transport syst 69.6 5.4 0.00018 36.1 5.2 61 208-269 2-68 (272)
9 3e61_A Putative transcriptiona 69.6 2.9 9.8E-05 38.3 3.3 62 205-267 5-72 (277)
10 3hr4_A Nitric oxide synthase, 69.4 18 0.0006 33.2 8.6 71 191-266 22-93 (219)
11 3jvd_A Transcriptional regulat 67.7 7.2 0.00025 37.1 5.9 74 206-285 62-141 (333)
12 3brs_A Periplasmic binding pro 65.8 7.2 0.00025 35.7 5.3 80 206-285 3-95 (289)
13 3f6r_A Flavodoxin; FMN binding 65.3 10 0.00035 31.5 5.7 57 210-270 3-59 (148)
14 5nul_A Flavodoxin; electron tr 64.4 11 0.00038 30.8 5.7 55 211-270 1-55 (138)
15 3uug_A Multiple sugar-binding 64.3 6.9 0.00024 36.6 4.9 63 207-270 2-70 (330)
16 3gyb_A Transcriptional regulat 62.8 8.8 0.0003 34.9 5.3 62 206-271 3-71 (280)
17 3l6u_A ABC-type sugar transpor 62.6 6.2 0.00021 36.2 4.2 66 205-271 5-76 (293)
18 3tb6_A Arabinose metabolism tr 61.6 6.9 0.00023 35.9 4.3 60 209-269 16-81 (298)
19 3g1w_A Sugar ABC transporter; 61.1 8.1 0.00028 35.7 4.7 64 208-271 4-73 (305)
20 3miz_A Putative transcriptiona 60.8 8.6 0.00029 35.6 4.9 80 205-285 10-97 (301)
21 3m9w_A D-xylose-binding peripl 60.2 18 0.0006 33.6 7.0 77 208-285 2-88 (313)
22 2xed_A Putative maleate isomer 57.6 49 0.0017 31.0 9.6 81 206-291 144-244 (273)
23 2fep_A Catabolite control prot 57.0 7.2 0.00025 36.0 3.6 65 204-269 12-82 (289)
24 2iks_A DNA-binding transcripti 56.3 23 0.00079 32.4 7.0 79 206-285 18-105 (293)
25 3fni_A Putative diflavin flavo 56.3 16 0.00056 31.1 5.5 61 208-270 4-66 (159)
26 3clk_A Transcription regulator 55.6 11 0.00037 34.7 4.5 79 206-285 6-93 (290)
27 2fz5_A Flavodoxin; alpha/beta 54.2 41 0.0014 26.9 7.5 55 211-270 2-56 (137)
28 3jy6_A Transcriptional regulat 53.8 14 0.00049 33.5 5.0 79 206-285 5-90 (276)
29 2l2q_A PTS system, cellobiose- 53.6 47 0.0016 26.4 7.6 73 213-290 8-88 (109)
30 3o1i_D Periplasmic protein TOR 51.9 18 0.00062 33.1 5.5 65 207-271 4-75 (304)
31 3qk7_A Transcriptional regulat 51.9 12 0.0004 34.6 4.1 66 205-270 3-76 (294)
32 3trh_A Phosphoribosylaminoimid 51.8 29 0.00098 30.6 6.2 77 205-284 3-88 (169)
33 3l49_A ABC sugar (ribose) tran 51.5 7.4 0.00025 35.6 2.6 63 206-269 3-71 (291)
34 1f4p_A Flavodoxin; electron tr 49.9 29 0.00099 28.5 5.9 56 210-270 2-58 (147)
35 1gud_A ALBP, D-allose-binding 47.6 18 0.00061 33.2 4.6 62 208-269 1-69 (288)
36 3e3m_A Transcriptional regulat 47.3 22 0.00074 33.9 5.3 64 206-270 68-137 (355)
37 3brq_A HTH-type transcriptiona 46.9 18 0.0006 33.0 4.4 62 207-269 18-87 (296)
38 2fn9_A Ribose ABC transporter, 46.7 19 0.00066 32.8 4.7 61 209-270 3-69 (290)
39 3g85_A Transcriptional regulat 46.4 27 0.00093 31.7 5.7 66 205-270 8-79 (289)
40 3c3k_A Alanine racemase; struc 45.7 36 0.0012 31.0 6.4 62 206-268 6-73 (285)
41 3k9c_A Transcriptional regulat 45.5 40 0.0014 30.8 6.7 64 206-271 10-78 (289)
42 3h5o_A Transcriptional regulat 43.0 52 0.0018 30.8 7.3 64 206-270 60-129 (339)
43 2ioy_A Periplasmic sugar-bindi 42.7 28 0.00096 31.7 5.1 59 209-268 2-66 (283)
44 3k4h_A Putative transcriptiona 42.4 24 0.0008 32.1 4.6 63 205-269 5-79 (292)
45 1bvy_F Protein (cytochrome P45 42.3 44 0.0015 29.5 6.2 60 205-270 18-77 (191)
46 2h3h_A Sugar ABC transporter, 42.1 21 0.00072 33.1 4.2 61 209-270 2-68 (313)
47 3hly_A Flavodoxin-like domain; 42.1 38 0.0013 28.7 5.6 59 210-270 2-61 (161)
48 3ctp_A Periplasmic binding pro 41.9 53 0.0018 30.6 7.1 62 206-269 58-125 (330)
49 3ors_A N5-carboxyaminoimidazol 41.7 64 0.0022 28.1 6.9 75 207-284 2-85 (163)
50 2h0a_A TTHA0807, transcription 41.5 28 0.00094 31.3 4.8 75 210-285 1-83 (276)
51 1u11_A PURE (N5-carboxyaminoim 41.5 39 0.0013 30.0 5.5 79 203-284 16-103 (182)
52 3gv0_A Transcriptional regulat 41.5 14 0.00047 34.0 2.7 63 205-268 5-75 (288)
53 1tvm_A PTS system, galactitol- 41.4 99 0.0034 24.7 7.7 63 213-285 25-90 (113)
54 3kjx_A Transcriptional regulat 41.2 23 0.00077 33.5 4.4 61 208-269 68-134 (344)
55 4grd_A N5-CAIR mutase, phospho 41.1 64 0.0022 28.4 6.8 76 206-284 10-94 (173)
56 1dbq_A Purine repressor; trans 40.5 49 0.0017 29.9 6.4 64 206-270 5-74 (289)
57 1e2b_A Enzyme IIB-cellobiose; 40.4 49 0.0017 26.4 5.6 71 214-291 8-86 (106)
58 3lp6_A Phosphoribosylaminoimid 39.8 56 0.0019 28.9 6.2 74 208-284 7-89 (174)
59 3oow_A Phosphoribosylaminoimid 39.5 70 0.0024 28.0 6.8 72 210-284 7-87 (166)
60 3kuu_A Phosphoribosylaminoimid 38.7 71 0.0024 28.2 6.7 73 209-284 13-94 (174)
61 3hcw_A Maltose operon transcri 38.1 13 0.00045 34.3 2.0 63 205-269 4-78 (295)
62 1tjy_A Sugar transport protein 37.6 18 0.00063 33.8 3.0 64 208-271 3-72 (316)
63 3bbl_A Regulatory protein of L 37.3 37 0.0013 30.9 5.1 61 207-269 3-74 (287)
64 3gbv_A Putative LACI-family tr 37.2 59 0.002 29.4 6.5 66 205-270 5-80 (304)
65 2dri_A D-ribose-binding protei 37.1 42 0.0014 30.2 5.4 59 209-268 2-66 (271)
66 1jye_A Lactose operon represso 37.0 49 0.0017 31.3 6.0 62 206-267 59-126 (349)
67 3rot_A ABC sugar transporter, 36.2 20 0.00068 33.0 3.0 63 209-271 4-73 (297)
68 2fvy_A D-galactose-binding per 36.0 24 0.00082 32.3 3.5 62 208-270 2-70 (309)
69 4b4k_A N5-carboxyaminoimidazol 34.9 85 0.0029 27.8 6.6 73 209-284 23-104 (181)
70 2i0f_A 6,7-dimethyl-8-ribityll 34.5 48 0.0016 28.8 4.9 61 209-269 13-83 (157)
71 4fe7_A Xylose operon regulator 34.5 28 0.00096 34.0 3.9 59 205-265 22-82 (412)
72 3ksm_A ABC-type sugar transpor 34.3 36 0.0012 30.4 4.3 60 210-269 2-69 (276)
73 3s40_A Diacylglycerol kinase; 34.0 1.3E+02 0.0043 28.3 8.4 36 210-245 10-46 (304)
74 2q9u_A A-type flavoprotein; fl 33.7 72 0.0025 31.0 6.8 61 209-271 257-318 (414)
75 3dbi_A Sugar-binding transcrip 33.3 65 0.0022 30.1 6.2 63 206-269 59-129 (338)
76 3huu_A Transcription regulator 33.3 21 0.00073 32.9 2.7 63 206-270 20-94 (305)
77 1ykg_A SIR-FP, sulfite reducta 33.3 43 0.0015 28.5 4.5 56 210-270 11-66 (167)
78 2dgd_A 223AA long hypothetical 33.2 2E+02 0.0069 25.4 9.3 80 206-291 106-207 (223)
79 1czn_A Flavodoxin; FMN binding 33.0 57 0.0019 27.4 5.2 55 210-270 2-56 (169)
80 8abp_A L-arabinose-binding pro 32.9 31 0.0011 31.5 3.7 60 209-270 3-68 (306)
81 1qpz_A PURA, protein (purine n 32.8 1.1E+02 0.0038 28.4 7.8 63 206-269 56-124 (340)
82 3d8u_A PURR transcriptional re 32.0 62 0.0021 28.9 5.6 60 208-269 3-69 (275)
83 3bil_A Probable LACI-family tr 32.0 58 0.002 30.8 5.6 62 207-269 65-132 (348)
84 3qe2_A CPR, P450R, NADPH--cyto 31.4 20 0.00069 37.9 2.4 61 207-269 17-79 (618)
85 3end_A Light-independent proto 31.2 50 0.0017 30.8 4.9 53 193-247 26-78 (307)
86 2hsg_A Glucose-resistance amyl 31.0 55 0.0019 30.5 5.2 63 206-269 58-126 (332)
87 2rgy_A Transcriptional regulat 30.7 64 0.0022 29.3 5.5 63 206-269 6-77 (290)
88 3d02_A Putative LACI-type tran 30.3 49 0.0017 30.1 4.6 61 208-268 4-70 (303)
89 2jvf_A De novo protein M7; tet 29.7 1.4E+02 0.0048 22.4 6.0 53 195-247 31-86 (96)
90 1o4v_A Phosphoribosylaminoimid 29.7 1.3E+02 0.0044 26.7 6.9 74 208-284 13-95 (183)
91 2i14_A Nicotinate-nucleotide p 29.0 1E+02 0.0035 30.6 6.9 58 208-265 233-294 (395)
92 3ox7_P MH027; urokinase-type p 28.4 14 0.00048 20.9 0.3 8 387-394 8-15 (23)
93 2bpo_A CPR, P450R, NADPH-cytoc 28.3 1.2E+02 0.0042 32.2 7.8 56 208-266 49-105 (682)
94 1hqk_A 6,7-dimethyl-8-ribityll 28.2 99 0.0034 26.6 5.8 60 210-269 14-81 (154)
95 2o20_A Catabolite control prot 27.9 1E+02 0.0035 28.6 6.5 62 206-268 61-128 (332)
96 3rg8_A Phosphoribosylaminoimid 27.9 99 0.0034 26.8 5.7 73 209-284 3-85 (159)
97 2qu7_A Putative transcriptiona 27.9 43 0.0015 30.4 3.7 62 206-269 6-73 (288)
98 1req_B Methylmalonyl-COA mutas 27.7 30 0.001 36.7 2.9 61 206-272 559-624 (637)
99 3h75_A Periplasmic sugar-bindi 27.6 74 0.0025 29.8 5.5 59 208-267 3-70 (350)
100 2ark_A Flavodoxin; FMN, struct 27.3 95 0.0033 26.6 5.8 57 210-271 6-63 (188)
101 2ohh_A Type A flavoprotein FPR 27.0 1.1E+02 0.0039 29.3 6.9 61 208-270 256-317 (404)
102 2a5l_A Trp repressor binding p 26.8 1.7E+02 0.0059 24.8 7.4 39 209-248 6-44 (200)
103 2i1o_A Nicotinate phosphoribos 26.7 66 0.0023 32.0 5.1 57 209-265 236-297 (398)
104 2rjo_A Twin-arginine transloca 26.3 70 0.0024 29.7 5.0 64 206-270 3-74 (332)
105 1obo_A Flavodoxin; electron tr 25.8 1.1E+02 0.0036 25.6 5.6 55 209-270 2-56 (169)
106 2qh8_A Uncharacterized protein 25.2 39 0.0013 31.2 2.9 63 206-269 6-79 (302)
107 2bru_C NAD(P) transhydrogenase 25.2 73 0.0025 28.1 4.4 35 231-269 80-115 (186)
108 2vk2_A YTFQ, ABC transporter p 25.1 58 0.002 29.9 4.1 61 209-270 3-69 (306)
109 2qv7_A Diacylglycerol kinase D 23.8 1.9E+02 0.0065 27.4 7.7 36 210-245 26-62 (337)
110 2kyr_A Fructose-like phosphotr 23.8 1.7E+02 0.0058 23.7 6.1 72 208-284 6-84 (111)
111 1rvv_A Riboflavin synthase; tr 23.3 1.1E+02 0.0037 26.4 5.1 60 210-269 14-81 (154)
112 1xmp_A PURE, phosphoribosylami 23.0 1.1E+02 0.0039 26.8 5.2 73 209-284 12-93 (170)
113 1e5d_A Rubredoxin\:oxygen oxid 22.8 2E+02 0.0068 27.5 7.7 61 208-270 252-313 (402)
114 2vzf_A NADH-dependent FMN redu 22.4 1.3E+02 0.0046 25.9 5.8 42 210-251 4-47 (197)
115 1tqj_A Ribulose-phosphate 3-ep 21.9 2.8E+02 0.0095 24.8 8.0 61 207-267 134-202 (230)
116 2php_A Uncharacterized protein 21.7 57 0.0019 29.2 3.1 37 21-62 145-181 (192)
117 3lkv_A Uncharacterized conserv 21.5 1.7E+02 0.0059 27.0 6.7 111 195-310 126-246 (302)
118 1o4u_A Type II quinolic acid p 21.4 1.2E+02 0.0042 28.6 5.6 63 205-271 209-273 (285)
119 2fsv_C NAD(P) transhydrogenase 21.2 1E+02 0.0036 27.6 4.6 50 233-286 98-154 (203)
120 2bfw_A GLGA glycogen synthase; 21.1 61 0.0021 27.4 3.2 53 211-270 72-126 (200)
121 1pno_A NAD(P) transhydrogenase 20.9 84 0.0029 27.6 3.9 54 229-286 71-131 (180)
122 2zki_A 199AA long hypothetical 20.8 2E+02 0.0068 24.4 6.6 39 209-249 5-43 (199)
123 1c2y_A Protein (lumazine synth 20.8 97 0.0033 26.7 4.3 60 210-269 15-81 (156)
124 1d4o_A NADP(H) transhydrogenas 20.6 92 0.0031 27.5 4.1 54 229-286 70-130 (184)
125 2bon_A Lipid kinase; DAG kinas 20.4 1.6E+02 0.0056 27.9 6.4 39 209-249 30-68 (332)
126 3lft_A Uncharacterized protein 20.0 54 0.0018 30.1 2.7 59 209-269 3-72 (295)
No 1
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=100.00 E-value=4.4e-81 Score=628.32 Aligned_cols=272 Identities=22% Similarity=0.337 Sum_probs=243.6
Q ss_pred CCCCCccCCccChhhhcccCCcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhhcCCCCcEEEEecccchhh
Q 014409 1 MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHA 80 (425)
Q Consensus 1 LaDtsYGsCCVDevaA~hv~aD~iVHyGhaClsp~~~lpviYVf~~~~ld~~~~~~~~~~~~~~~~~~v~l~~dvqy~~~ 80 (425)
|||||||||||||++|+|++||+|||||||||++++++||+|||++.++|++++++.+.+.+.+..++|+|++|+||.|+
T Consensus 87 lgDttYGACCVDe~aA~~v~aD~lVHyGHsCL~~~~~lpvlYVf~~~~iD~~~~~~~~~~~~~~~~~~i~L~~tiq~~~~ 166 (378)
T 3lzd_A 87 HGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIGEIKKLGRKIIVTTTAQHIHQ 166 (378)
T ss_dssp ECSCCCCTTSCCHHHHHHTTCSEEEEEECCCCSCCCSSCEEEEECCCCCCCHHHHHHTHHHHHTTCSEEEEEECGGGGGG
T ss_pred EcCCcccCcccCHHHHhhcCCCEEEEcCCCcCCcccCCCEEEEeccCCCCHHHHHHHHHHhccCcCCeEEEEEcHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999998877655679999999999999
Q ss_pred hHHHHHHHHhhccCCCCCcceeeeeecceeeeecCCCCCCCCCCCCCCcccccccCccccCCCccCccceEEEEEcCCch
Q 014409 81 IPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNS 160 (425)
Q Consensus 81 l~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~gc~~~~~~~~~~~~~~~~~~~~~~i~~Ig~~~~ 160 (425)
++++++.|++.|+. +.+ .+....+.++|+++||++..+. .+.+ .++|||+|.|
T Consensus 167 l~~~~~~L~~~g~~--------v~i--------~~~~~~~~~~gqvLGC~~~~~~---------~~~d--~~lyvG~g~F 219 (378)
T 3lzd_A 167 LKEAKEFLESEGFE--------VSI--------GRGDSRISWPGQVLGCNYSVAK---------VRGE--GILFIGSGIF 219 (378)
T ss_dssp HHHHHHHHHHTTCE--------EEC--------CCCCTTCSSTTBCBTTBCGGGC---------SSCS--EEEEESSSSH
T ss_pred HHHHHHHHHHcCCe--------EEe--------cCCCCCCCCCCccccccCCCcc---------cCCc--eEEEEcCCch
Confidence 99999999987652 222 2222344568999999876431 1222 6789999999
Q ss_pred hhhHHHhhcCCceEEEecCCCCccccccCcHHHHHHHHHHHHHHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCc
Q 014409 161 AFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKK 240 (425)
Q Consensus 161 ~l~~l~l~~~~~~v~~yDP~~~~~~~~~~~~~r~L~rRy~~I~ka~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk 240 (425)
|+++++|+ +.+++|+|||+++++... +.+++|||||++|+||++|++|||||||||+|+|++++++|+++|+++|||
T Consensus 220 H~~~l~l~-~~~~v~~yDP~s~~~~~~--~~~~~l~rR~~~I~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk 296 (378)
T 3lzd_A 220 HPLGLAVA-TRKKVLAIDPYTKAFSWI--DPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGRE 296 (378)
T ss_dssp HHHHHHHH-HCSEEEEECTTTCCEEEC--CCHHHHHHHHHHHHHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHhc-cCCcEEEECCCCCceeec--cHHHHHHHHHHHHHHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCc
Confidence 99999999 899999999999987553 488999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCHHHhcCCCCCCEEEEecCCCcccccccCCCCcccCHHHHHHhhCCCCccccceeecc
Q 014409 241 AYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF 307 (425)
Q Consensus 241 ~Y~~~vgkln~aKLaNF~eID~fV~vaCPr~si~d~~ef~kPViTP~ElevAL~~~~~W~g~y~~Df 307 (425)
+|+|+||||||+||+|| +||+||+|||||++|||+++|+||||||||++|||+.+. .|.+|+
T Consensus 297 ~y~i~vg~inp~KLanF-~iD~fV~vaCPrlsidd~~~F~KPvLTPyE~evAL~~~~----~y~~de 358 (378)
T 3lzd_A 297 ARLIVMNDVNYHKLEGF-PFEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLGLRE----EYEFDE 358 (378)
T ss_dssp EEEEEESSCCHHHHTTS-CCSEEEECSCTHHHHSCCSCCSSCEECHHHHHHHTTSCC----SCCCCC
T ss_pred EEEEEeCCCCHHHHhCC-CCCEEEEecCCCccccchhhCCCcccCHHHHHHHhCCCC----CCCCcc
Confidence 99999999999999999 699999999999999999999999999999999999855 555554
No 2
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=81.02 E-value=3.2 Score=37.48 Aligned_cols=77 Identities=8% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCcccccccCCCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKEFLA 281 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si~d~~ef~k 281 (425)
.++||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++........++...
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~l~~~~~ 80 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS 80 (255)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-TTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-CCcHHHHHHHHHHHHhcCCCEEEEecCccccHHHHHhcCC
Confidence 468999999887777889999999999999987655543 3344332 222 369999998875433222233345
Q ss_pred cccC
Q 014409 282 PVIT 285 (425)
Q Consensus 282 PViT 285 (425)
|+|+
T Consensus 81 pvV~ 84 (255)
T 1byk_A 81 SLVL 84 (255)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7653
No 3
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=78.16 E-value=4.4 Score=37.24 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=54.5
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCcccccccC
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKE 278 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si~d~~e 278 (425)
.+..++||+++..+.-..+..+++.+++.++++|.+..++.-..-++++- ..+ ..+|.+|+.+ +. +....+
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~--~~~~~~ 83 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA-FT--IPPNFH 83 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CC--CCTTCC
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hH--HHHHHh
Confidence 45678999999998877888999999999999999834444444455432 222 3699999987 32 333344
Q ss_pred CCCcccC
Q 014409 279 FLAPVIT 285 (425)
Q Consensus 279 f~kPViT 285 (425)
...|+|+
T Consensus 84 ~~iPvV~ 90 (277)
T 3hs3_A 84 LNTPLVM 90 (277)
T ss_dssp CSSCEEE
T ss_pred CCCCEEE
Confidence 5667763
No 4
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=76.17 E-value=8.1 Score=35.76 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=57.5
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEE---------cCCCCHHHhc--------CCCCCCEEEEec
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV---------MGKPNPAKLA--------NFPECDVFINVS 267 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~---------vgkln~aKLa--------NF~eID~fV~va 267 (425)
+..+++|||| +| +...+-+.+++.++++|....... +|+++++.+. .-+++|+.|+ +
T Consensus 114 ~~g~~rvgll-tp----y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL-~ 187 (240)
T 3ixl_A 114 ALGVRRVALA-TA----YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILL-S 187 (240)
T ss_dssp HTTCSEEEEE-ES----SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEE-E
T ss_pred HhCCCEEEEE-eC----ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEE-e
Confidence 3468999997 34 345667888999999999876543 3455655442 3457887665 5
Q ss_pred CCCccccc-----ccCCCCcccCHHHHHH
Q 014409 268 CAQTALLD-----SKEFLAPVITPFEAML 291 (425)
Q Consensus 268 CPr~si~d-----~~ef~kPViTP~Elev 291 (425)
|=+....+ .+++-+||+++-++.+
T Consensus 188 CT~l~~l~~i~~le~~lg~PVids~~a~~ 216 (240)
T 3ixl_A 188 SGGLLTLDAIPEVERRLGVPVVSSSPAGF 216 (240)
T ss_dssp CTTSCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred CCCCchhhhHHHHHHHhCCCEEeHHHHHH
Confidence 99998764 5678899999977644
No 5
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=73.46 E-value=4.6 Score=37.69 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=52.1
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------hcCCCCCCEEEEecCCCcc---cccc
Q 014409 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQTA---LLDS 276 (425)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK-------LaNF~eID~fV~vaCPr~s---i~d~ 276 (425)
..++||+|+..+.-..+..+++.+++.++++|.+..++..+. ++++ |.+ ..+|.+|+.++.... +...
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~~l 91 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDA-PPRGTQQLSRLVSE-GRVDGVLLQRREDFDDDMLAAV 91 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCS-TTHHHHHHHHHHHS-CSSSEEEECCCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHh-CCCcEEEEecCCCCcHHHHHHH
Confidence 457999999998878889999999999999999987766553 3322 222 369999998875442 2223
Q ss_pred cCCCCccc
Q 014409 277 KEFLAPVI 284 (425)
Q Consensus 277 ~ef~kPVi 284 (425)
.+ ..|||
T Consensus 92 ~~-~iPvV 98 (303)
T 3kke_A 92 LE-GVPAV 98 (303)
T ss_dssp HT-TSCEE
T ss_pred hC-CCCEE
Confidence 34 56665
No 6
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=72.05 E-value=4.9 Score=36.79 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=48.8
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
+..++||+|+..+.-..+..+++.+++.++++|....++..+ -++++..++ .+|.+|+.++..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~-~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGK-KSHLFIPEK-MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEEST-TTTTCCCTT-TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHhhc-cccEEEEecCCC
Confidence 346789999998887788899999999999999877655443 345555555 799999987643
No 7
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=70.91 E-value=4.8 Score=37.09 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=54.2
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCcc--cccc
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTA--LLDS 276 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~s--i~d~ 276 (425)
.+..++||+++..+.-..+..+++.+++.+++.|.+..++..+. ++++. ..+ ..+|.+|+.+..... +...
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 83 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEGEHDYLRTE 83 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHS
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHh
Confidence 45678999999998877788999999999999998877666543 44432 112 369999998775411 1123
Q ss_pred cCCCCccc
Q 014409 277 KEFLAPVI 284 (425)
Q Consensus 277 ~ef~kPVi 284 (425)
.+-..|+|
T Consensus 84 ~~~~iPvV 91 (291)
T 3egc_A 84 LPKTFPIV 91 (291)
T ss_dssp SCTTSCEE
T ss_pred hccCCCEE
Confidence 34456766
No 8
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=69.63 E-value=5.4 Score=36.13 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEecCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 269 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~vaCP 269 (425)
.++||+++.++.-..+..+++.+++.++++|.+..++..+. ++++.. .+ ..+|.+|+.++.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD-QPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 57899999998878888999999999999999887766543 554321 11 269999987765
No 9
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=69.56 E-value=2.9 Score=38.29 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=44.5
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEec
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVS 267 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~va 267 (425)
.+..++||+++..+.-..+..+++.+++.++++|.+..++.... ++++.. ++ ..+|.+|+.+
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 5 KRKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN-DIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECG
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEec
Confidence 34567999999998878889999999999999999877665543 544321 12 3699999976
No 10
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=69.37 E-value=18 Score=33.19 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhcCC-eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEe
Q 014409 191 PLKILKRRYYLVEKAKDAN-IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINV 266 (425)
Q Consensus 191 ~~r~L~rRy~~I~ka~~A~-~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~v 266 (425)
..+..+-.-.+|.++++.+ .+.|+.||..| +...++++|.+.+ ++|.+.-++.+.+.+++.|.+ -+.+|++
T Consensus 22 ~~~av~~~~~l~~~~~~~~~kv~IlYgS~tG-nte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~---~~~vI~~ 93 (219)
T 3hr4_A 22 LVKAVLFACMLMRKTMASRVRVTILFATETG-KSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEE---ERLLLVV 93 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECSSS-HHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGT---CSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhcc---CCeEEEE
Confidence 4566666677888898875 89999999864 5678889998887 478888888899988887754 3555444
No 11
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=67.70 E-value=7.2 Score=37.07 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=53.9
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCcccccccCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKEF 279 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si~d~~ef 279 (425)
+..++||+|+..+.-..+..+++.+++.++++|....++..+. +++. ..+ ..+|.+|+.+. +....+.
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~----~~~~~~~ 135 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--VQAQDVVMESLISIQAAGIIHVPV----VGSIAPE 135 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--HHHHHHHHHHHHHHTCSEEEECCC----TTCCC-C
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHHHhCCCCEEEEcch----HHHHhhC
Confidence 3468999999998877788999999999999999888777766 4432 122 26899999877 4444455
Q ss_pred CCcccC
Q 014409 280 LAPVIT 285 (425)
Q Consensus 280 ~kPViT 285 (425)
..|+|+
T Consensus 136 ~iPvV~ 141 (333)
T 3jvd_A 136 GIPMVQ 141 (333)
T ss_dssp CSCEEE
T ss_pred CCCEEE
Confidence 667763
No 12
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=65.79 E-value=7.2 Score=35.66 Aligned_cols=80 Identities=8% Similarity=-0.051 Sum_probs=51.2
Q ss_pred hcCCeEEEEEcCCc--ccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHh----cCC--CCCCEEEEecCCCccc---
Q 014409 206 KDANIIGVLVGTLG--VAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKL----ANF--PECDVFINVSCAQTAL--- 273 (425)
Q Consensus 206 ~~A~~iGIlvgTl~--~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKL----aNF--~eID~fV~vaCPr~si--- 273 (425)
+..++||+++..++ -..+..+++.+++.++++|.+..++... .-++++. .++ ..+|.+|+.++....+
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~ 82 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 34678999998877 6677899999999999999765544432 3454432 122 3689999887754431
Q ss_pred -ccccCCCCcccC
Q 014409 274 -LDSKEFLAPVIT 285 (425)
Q Consensus 274 -~d~~ef~kPViT 285 (425)
....+-..|||+
T Consensus 83 ~~~~~~~~iPvV~ 95 (289)
T 3brs_A 83 AKEIKDAGIKLIV 95 (289)
T ss_dssp HTTTGGGTCEEEE
T ss_pred HHHHHHCCCcEEE
Confidence 122334457664
No 13
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=65.31 E-value=10 Score=31.49 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=43.5
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
.+.|+.+|..+ +...+++.|.+.+++.|.+.-++-+.+.++..|.. +.|.+ +++||-
T Consensus 3 ki~I~y~S~tG-nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~--~~d~i-i~g~pt 59 (148)
T 3f6r_A 3 KVLIVFGSSTG-NTESIAQKLEELIAAGGHEVTLLNAADASAENLAD--GYDAV-LFGCSA 59 (148)
T ss_dssp EEEEEEECSSS-HHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT--TCSEE-EEEECE
T ss_pred eEEEEEECCCc-hHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc--cCCEE-EEEecc
Confidence 57899999764 56899999999999999988888888877766541 45654 555664
No 14
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=64.37 E-value=11 Score=30.83 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=43.6
Q ss_pred EEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 211 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 211 iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
|.|+-+|.. -+...+++.|.+.++++|..+-++-+.+.++.+|.+ .|. |+++||-
T Consensus 1 i~I~Y~S~t-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~---~d~-iiig~pt 55 (138)
T 5nul_A 1 MKIVYWSGT-GNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLN---EDI-LILGCSA 55 (138)
T ss_dssp CEEEEECSS-SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTT---CSE-EEEEECC
T ss_pred CEEEEECCC-chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhh---CCE-EEEEcCc
Confidence 457888875 467899999999999999999899999999988755 465 4555664
No 15
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=64.26 E-value=6.9 Score=36.64 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=48.9
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCC
Q 014409 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (425)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 270 (425)
+.++||+++..+.-..+..+++.+++.++++|.+..++. ..-++++- .++ ..+|+.|+.++..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~ 70 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASIDG 70 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 568999999999888889999999999999998866655 55565542 222 2699999987764
No 16
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=62.82 E-value=8.8 Score=34.93 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=47.3
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------hcCCCCCCEEEEecCCCc
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQT 271 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK-------LaNF~eID~fV~vaCPr~ 271 (425)
+..++||+++..+.-..+..+++.+++.++++|.+..++... ++++ |.+ ..+|.+| +++...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL--TSQAGTDPITSALS-MRPDGII-IAQDIP 71 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHHT-TCCSEEE-EESCC-
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHHh-CCCCEEE-ecCCCC
Confidence 456899999999888889999999999999999987777666 4332 222 3699999 766543
No 17
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=62.59 E-value=6.2 Score=36.22 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=47.0
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCc
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 271 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~ 271 (425)
.+..++||+|+..+.-..+..+++.+++.+++.|.+..++..+ -++++. .++ ..+|.+|+.++...
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ-NSRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 3457899999999887778899999999999999987665543 444332 222 36999999877544
No 18
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=61.59 E-value=6.9 Score=35.86 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=46.9
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEecCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 269 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~vaCP 269 (425)
++||+|+..+.-..+..+++.+++.++++|.+..++... -++++.. .+ ..+|.+|+.++.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-NNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999988888999999999999999987666544 4554321 12 369999998764
No 19
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=61.09 E-value=8.1 Score=35.70 Aligned_cols=64 Identities=2% Similarity=-0.124 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcC----C--CCCCEEEEecCCCc
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLAN----F--PECDVFINVSCAQT 271 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaN----F--~eID~fV~vaCPr~ 271 (425)
.++||+|+...+-..+..+++.+++.++++|.+..++....-++++-.+ + ..+|.+|+.++...
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 73 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV 73 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 5789999999888888899999999999999887765566666654322 1 26899999877654
No 20
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=60.79 E-value=8.6 Score=35.56 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=54.5
Q ss_pred HhcCCeEEEEEcCCcccCcH-HHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCccc-ccc
Q 014409 205 AKDANIIGVLVGTLGVAGYL-HMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTAL-LDS 276 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~-~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si-~d~ 276 (425)
.+..++||+|+..+.-..+. .+++.+++.++++|....++..+ -++++- ..+ ..+|.+|+.+...... ...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~ 88 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG-GSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPES 88 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCC
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEecCCccHHHHHH
Confidence 34578999999998877888 99999999999999887666543 344332 111 2699999987653332 223
Q ss_pred cCCCCcccC
Q 014409 277 KEFLAPVIT 285 (425)
Q Consensus 277 ~ef~kPViT 285 (425)
.+...|||+
T Consensus 89 ~~~~iPvV~ 97 (301)
T 3miz_A 89 GDVSIPTVM 97 (301)
T ss_dssp TTCCCCEEE
T ss_pred HhCCCCEEE
Confidence 344567763
No 21
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=60.20 E-value=18 Score=33.59 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCccc----cccc
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTAL----LDSK 277 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~si----~d~~ 277 (425)
.++||+|+..+....+..+++-+++.+++.|.+..++.. .-++++- .++ ..+|.+|+.+.....+ ....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 368999999998889999999999999999987666544 4455432 222 3699999988765432 1233
Q ss_pred CCCCcccC
Q 014409 278 EFLAPVIT 285 (425)
Q Consensus 278 ef~kPViT 285 (425)
+-..|||+
T Consensus 81 ~~~iPvV~ 88 (313)
T 3m9w_A 81 QEGIKVLA 88 (313)
T ss_dssp TTTCEEEE
T ss_pred HCCCeEEE
Confidence 44556654
No 22
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=57.60 E-value=49 Score=30.95 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=55.7
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEc---------CCCCHHHhc------CCCCCCEEEEecCCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM---------GKPNPAKLA------NFPECDVFINVSCAQ 270 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~v---------gkln~aKLa------NF~eID~fV~vaCPr 270 (425)
..+++||||. +.. ..+-+.+++.+++.|.....+.- |+++++.+. .-++.|+.|+-||=+
T Consensus 144 ~g~~rvgvlt-p~~----~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~ 218 (273)
T 2xed_A 144 LDAQRVALVT-PYM----RPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQ 218 (273)
T ss_dssp TTCCEEEEEE-CSC----HHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSS
T ss_pred cCCCeEEEEc-CCh----hhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCC
Confidence 4578999993 422 34455888899999988654432 244555442 224789988888999
Q ss_pred ccccc-----ccCCCCcccCHHHHHH
Q 014409 271 TALLD-----SKEFLAPVITPFEAML 291 (425)
Q Consensus 271 ~si~d-----~~ef~kPViTP~Elev 291 (425)
.++.+ .+++-+|||++-++.+
T Consensus 219 l~~~~~~~~le~~lg~PVids~~a~a 244 (273)
T 2xed_A 219 MPSLPLVETAEREFGIPVLSAATAGA 244 (273)
T ss_dssp SCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred cchHHhHHHHHHHhCCCEEcHHHHHH
Confidence 98742 3457899999988755
No 23
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=57.01 E-value=7.2 Score=36.01 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 204 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 204 ka~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
+.+..++||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++.
T Consensus 12 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 12 SSKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-DQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ----CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred ccCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3455789999998877677789999999999999987655443 3344332 122 368999887753
No 24
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=56.30 E-value=23 Score=32.39 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=53.1
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEecCCCcc--c-ccc
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTA--L-LDS 276 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~vaCPr~s--i-~d~ 276 (425)
+...+||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++.... + ...
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~ 96 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW 96 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH
Confidence 45789999998887777789999999999999987665443 334443 2222 369999998765322 1 222
Q ss_pred cCCCCcccC
Q 014409 277 KEFLAPVIT 285 (425)
Q Consensus 277 ~ef~kPViT 285 (425)
.+-..|||+
T Consensus 97 ~~~~iPvV~ 105 (293)
T 2iks_A 97 ANDPFPIVA 105 (293)
T ss_dssp TTSSSCEEE
T ss_pred HhCCCCEEE
Confidence 334467764
No 25
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=56.30 E-value=16 Score=31.13 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC-CHHHhc-CCCCCCEEEEecCCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKLA-NFPECDVFINVSCAQ 270 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkl-n~aKLa-NF~eID~fV~vaCPr 270 (425)
.+.+.|+-+|.. -+...+++.|.+-+++.|..+-++-+.+. .+..+. .+.+.|+ |+++||-
T Consensus 4 ~~kv~IvY~S~~-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~-ii~Gspt 66 (159)
T 3fni_A 4 ETSIGVFYVSEY-GYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTG-LVIGMSP 66 (159)
T ss_dssp CCEEEEEECTTS-TTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEE-EEEECCB
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCE-EEEEcCc
Confidence 457899999985 56789999999999999998888999998 887764 3445564 5566774
No 26
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=55.61 E-value=11 Score=34.68 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=46.4
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------hcCCCCCCEEEEecCCCc--ccccc
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQT--ALLDS 276 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK-------LaNF~eID~fV~vaCPr~--si~d~ 276 (425)
+..++||+|+..+.-..+..+++.+++.+++.|.+..++.-..-++++ |.. ..+|.+|+.++... .+...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~~~l 84 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE-RPVMGILLLSIALTDDNLQLL 84 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHS-SCCSEEEEESCC----CHHHH
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEecccCCHHHHHHH
Confidence 456799999988877778899999999999999876554122223332 222 36999998776432 12222
Q ss_pred cCCCCcccC
Q 014409 277 KEFLAPVIT 285 (425)
Q Consensus 277 ~ef~kPViT 285 (425)
.+...|+|+
T Consensus 85 ~~~~iPvV~ 93 (290)
T 3clk_A 85 QSSDVPYCF 93 (290)
T ss_dssp HCC--CEEE
T ss_pred HhCCCCEEE
Confidence 334556654
No 27
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=54.23 E-value=41 Score=26.93 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=43.6
Q ss_pred EEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 211 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 211 iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
+.|+.+|.. -+...+++.+.+.+++.|.+.-++-+.+.++++|.+. |.+ +++||-
T Consensus 2 i~iiy~S~t-GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~---d~v-i~g~p~ 56 (137)
T 2fz5_A 2 VEIVYWSGT-GNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASK---DVI-LLGCPA 56 (137)
T ss_dssp EEEEECCSS-SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTC---SEE-EEECCC
T ss_pred EEEEEECCC-ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcC---CEE-EEEccc
Confidence 568888875 4567899999999999999988888999888887654 654 556775
No 28
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=53.80 E-value=14 Score=33.52 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=54.2
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEecCCCcccc-cccC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALL-DSKE 278 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~vaCPr~si~-d~~e 278 (425)
+..++||+|+..+.-..+..+++.+++.++++|.+..++.... ++++ +.++ ..+|.+|+.++...... ...+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~ 83 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA-DIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILH 83 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT-CHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHH
Confidence 4578999999998777788999999999999998877666543 4432 1122 36999999887651111 2233
Q ss_pred CCCcccC
Q 014409 279 FLAPVIT 285 (425)
Q Consensus 279 f~kPViT 285 (425)
...|||+
T Consensus 84 ~~iPvV~ 90 (276)
T 3jy6_A 84 QQMPVVS 90 (276)
T ss_dssp TSSCEEE
T ss_pred CCCCEEE
Confidence 4556653
No 29
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=53.58 E-value=47 Score=26.42 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=45.8
Q ss_pred EEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCCccc--ccc----cCCCCcc--c
Q 014409 213 VLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTAL--LDS----KEFLAPV--I 284 (425)
Q Consensus 213 IlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr~si--~d~----~ef~kPV--i 284 (425)
+++..-|.... -++++|++.+++.|...-+-.++--..... ..++|+++.. |+... .+. .++.+|| |
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~--~~~~D~Ii~t--~~l~~~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSEV--VDRFDVVLLA--PQSRFNKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHHH--TTTCSEEEEC--SCCSSHHHHHHHHHHHHTCCEEEC
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHhh--cCCCCEEEEC--CccHHHHHHHHHHhcccCCCEEEE
Confidence 67777777777 888999999999998644433333333332 3568855444 44432 111 2356898 8
Q ss_pred CHHHHH
Q 014409 285 TPFEAM 290 (425)
Q Consensus 285 TP~Ele 290 (425)
+|..+.
T Consensus 83 ~~~~y~ 88 (109)
T 2l2q_A 83 NTIDYG 88 (109)
T ss_dssp CHHHHH
T ss_pred ChHHhc
Confidence 997764
No 30
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=51.94 E-value=18 Score=33.07 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=48.7
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCC-CCHHHhc----CC--CCCCEEEEecCCCc
Q 014409 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PNPAKLA----NF--PECDVFINVSCAQT 271 (425)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgk-ln~aKLa----NF--~eID~fV~vaCPr~ 271 (425)
...+||+|+..+.-..+..+++-+++.++++|.+..++.... .++++-. ++ ..+|.+|+.++...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467999999998878888999999999999998877766654 2544322 11 26899999877654
No 31
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=51.89 E-value=12 Score=34.61 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=47.8
Q ss_pred HhcCCeEEEEEc----CCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-HHHh-cCC--CCCCEEEEecCCC
Q 014409 205 AKDANIIGVLVG----TLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-PAKL-ANF--PECDVFINVSCAQ 270 (425)
Q Consensus 205 a~~A~~iGIlvg----Tl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln-~aKL-aNF--~eID~fV~vaCPr 270 (425)
.+..++||+|+. .+.-..+..+++.+++.++++|....++..+... ...+ ..+ ..+|.+|+.+...
T Consensus 3 ~~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 3 LGRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp --CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred CCccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 346789999998 6766778899999999999999988887776421 1112 111 3699999987754
No 32
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=51.82 E-value=29 Score=30.57 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=56.9
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCC------CCCCEEEEecCCCcccc--c
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--D 275 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d 275 (425)
|+....+|||.|+ ..=+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...|- -
T Consensus 3 ~m~~~~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv 79 (169)
T 3trh_A 3 AMNKIFVAILMGS---DSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTI 79 (169)
T ss_dssp ---CCEEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHH
T ss_pred CCCCCcEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH
Confidence 4566789999988 556888899999999999997766666 5579999888 56888888877766653 2
Q ss_pred ccCCCCccc
Q 014409 276 SKEFLAPVI 284 (425)
Q Consensus 276 ~~ef~kPVi 284 (425)
..--.+|||
T Consensus 80 A~~t~~PVI 88 (169)
T 3trh_A 80 AAHTLKPVI 88 (169)
T ss_dssp HHTCSSCEE
T ss_pred HhcCCCCEE
Confidence 334567776
No 33
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=51.54 E-value=7.4 Score=35.63 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=46.7
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
+..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++- .++ ..+|.+|+.++.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG-RNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 456899999998876677889999999999999887666543 454332 222 268999988775
No 34
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=49.90 E-value=29 Score=28.49 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=41.9
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCC-CCEEEEecCCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE-CDVFINVSCAQ 270 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~e-ID~fV~vaCPr 270 (425)
.+-|+.+|..+ +...+++.|.+.+.+.|...-++-+.+.++.. +.+ .|.+|+ +||-
T Consensus 2 ki~iiy~S~~G-nt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~---l~~~~d~ii~-~~p~ 58 (147)
T 1f4p_A 2 KALIVYGSTTG-NTEYTAETIARELADAGYEVDSRDAASVEAGG---LFEGFDLVLL-GCST 58 (147)
T ss_dssp EEEEEEECSSS-HHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT---TTTTCSEEEE-EECE
T ss_pred eEEEEEECCcC-HHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH---hcCcCCEEEE-EeCC
Confidence 46788898864 57899999999999999988888887776554 445 676544 5664
No 35
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=47.65 E-value=18 Score=33.23 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=44.8
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEc-CCCCHHH----hcCC--CCCCEEEEecCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAK----LANF--PECDVFINVSCA 269 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~v-gkln~aK----LaNF--~eID~fV~vaCP 269 (425)
|++||+|+..+.-..+..+++.+++.++++|....+... ..-++++ +.++ ..+|..|+.+..
T Consensus 1 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 69 (288)
T 1gud_A 1 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS 69 (288)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 578999999888777889999999999999977655442 3444443 2222 258999887653
No 36
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=47.28 E-value=22 Score=33.87 Aligned_cols=64 Identities=9% Similarity=0.216 Sum_probs=45.8
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEecCCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 270 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~vaCPr 270 (425)
+..++||+|+..+.-..+..+++.+.+.++++|....++..+ -++++.. .+ ..+|.+|+.+...
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA-YSPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 345799999999887788899999999999999887665443 3444321 11 2699999976543
No 37
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=46.89 E-value=18 Score=32.98 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=43.1
Q ss_pred cCCeEEEEEcC--CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 207 DANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 207 ~A~~iGIlvgT--l~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
...+||+++.. +....+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.+..
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC-CTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 46799999988 7777788999999999999998765443 34455432 222 369999887663
No 38
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=46.68 E-value=19 Score=32.76 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=42.9
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 270 (425)
++||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS-QNDTAKESAHFDAIIAAGYDAIIFNPTDA 69 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSCT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 57999998877667788999999999999987654443 3455432 111 3689988876643
No 39
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=46.45 E-value=27 Score=31.69 Aligned_cols=66 Identities=8% Similarity=0.056 Sum_probs=45.6
Q ss_pred HhcCCeEEEEEc-CCcccCcHHHHHHHHHHHHHcCCcEEEEEcCC-CC-HH-HhcCC--CCCCEEEEecCCC
Q 014409 205 AKDANIIGVLVG-TLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PN-PA-KLANF--PECDVFINVSCAQ 270 (425)
Q Consensus 205 a~~A~~iGIlvg-Tl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgk-ln-~a-KLaNF--~eID~fV~vaCPr 270 (425)
.+..++||+|+. ...-..+..+++.+++.++++|.+..++.... .. .. -+..+ ..+|.+|+.+...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 79 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISN 79 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCH
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCc
Confidence 456789999998 67777788999999999999999877665431 11 11 12222 2699999987643
No 40
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=45.68 E-value=36 Score=30.97 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=45.1
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSC 268 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaC 268 (425)
+..++||+|+..++-..+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+|+.++
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-ESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45689999998877777789999999999999988655543 3455432 122 36999998765
No 41
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=45.50 E-value=40 Score=30.77 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=46.0
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-H----HHhcCCCCCCEEEEecCCCc
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-P----AKLANFPECDVFINVSCAQT 271 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln-~----aKLaNF~eID~fV~vaCPr~ 271 (425)
+..++||+|+ .+.-..+..+++.+++.++++|.+..++..+.-. . ..|.+ ..+|.+|+.++...
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR-ERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT-TTEEEEEEETCCCC
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh-CCCCEEEEECCCCC
Confidence 4568999999 8777778899999999999999887776655321 1 22322 36999999887543
No 42
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=43.03 E-value=52 Score=30.80 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=46.2
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEecCCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 270 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~vaCPr 270 (425)
+..++||+|+..+....+..+++.+++.++++|....++.. .-++++.. .+ ..+|.+|+.+...
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-HYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 34579999999998888999999999999999988665443 33443321 11 3699999987543
No 43
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=42.66 E-value=28 Score=31.68 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=42.3
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEecC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 268 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~vaC 268 (425)
++||+++..+.-..+..+++.+++.++++|....+.. ..-++++ +.++ ..+|.+|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVED-SQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5899999888777788999999999999998765443 3444443 2222 26899988654
No 44
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=42.45 E-value=24 Score=32.14 Aligned_cols=63 Identities=10% Similarity=0.187 Sum_probs=45.4
Q ss_pred HhcCCeEEEEEcC-----CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------hcCCCCCCEEEEecCC
Q 014409 205 AKDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCA 269 (425)
Q Consensus 205 a~~A~~iGIlvgT-----l~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK-------LaNF~eID~fV~vaCP 269 (425)
.+..++||+|+.. +.-..+..+++.+++.++++|.+..++. ..-++++ |.+ ..+|.+|+.++.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~ 79 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMST-GETEEEIFNGVVKMVQG-RQIGGIILLYSR 79 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECC-CCSHHHHHHHHHHHHHT-TCCCEEEESCCB
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHc-CCCCEEEEeCCC
Confidence 4567899999999 8878888999999999999998655433 3333433 222 369999987654
No 45
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=42.31 E-value=44 Score=29.52 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=42.3
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
....+.+.|+.+|.. -+...++++|.+.|.+.|.++-++-+.+.. ..+.+.|.+ +++||=
T Consensus 18 ~~~~~kv~IvY~S~t-GnTe~~A~~ia~~l~~~g~~v~v~~l~~~~----~~l~~~d~v-i~g~~T 77 (191)
T 1bvy_F 18 NAHNTPLLVLYGSNM-GTAEGTARDLADIAMSKGFAPQVATLDSHA----GNLPREGAV-LIVTAS 77 (191)
T ss_dssp ---CCCEEEEEECSS-SHHHHHHHHHHHHHHTTTCCCEEEEGGGST----TCCCSSSEE-EEEECC
T ss_pred ccCCCeEEEEEECCC-hHHHHHHHHHHHHHHhCCCceEEeeHHHhh----hhhhhCCeE-EEEEee
Confidence 345677899999986 456789999999999999988888777641 245555654 556663
No 46
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=42.13 E-value=21 Score=33.12 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=42.9
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEecCCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 270 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~vaCPr 270 (425)
.+||+|+..++- .+..+++-+++.+++.|.+..++..+.-++++.. .+ ..+|++|+.++..
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 68 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP 68 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 368999988776 6778999999999999977554443455655421 11 3689998876643
No 47
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=42.06 E-value=38 Score=28.70 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=46.4
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc-CCCCCCEEEEecCCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQ 270 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa-NF~eID~fV~vaCPr 270 (425)
.+.|+-+|.. -+...+++.|.+.|++.|.+.-++-+.+..+..+. .+.+.|. |+++||-
T Consensus 2 kv~IvY~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~-ii~Gspt 61 (161)
T 3hly_A 2 SVLIGYLSDY-GYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARG-IVLGTPP 61 (161)
T ss_dssp CEEEEECTTS-TTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSE-EEEECCB
T ss_pred EEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCE-EEEEcCC
Confidence 3678889876 46789999999999999999888999999888764 3445675 4566774
No 48
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=41.88 E-value=53 Score=30.62 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
+...+||+|+...+-..+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+| .+..
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI-~~~~ 125 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT-DDDKEKEKTYLEVLQSHRVAGII-ASRS 125 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEE-EETC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEE-ECCC
Confidence 45689999998877667789999999999999987665543 3444432 222 3689998 6653
No 49
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=41.65 E-value=64 Score=28.14 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=54.5
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCC------CCCCEEEEecCCCcccc--ccc
Q 014409 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSK 277 (425)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~ 277 (425)
+...+|||.|+ ..=+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...|- -..
T Consensus 2 ~~~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 78 (163)
T 3ors_A 2 NAMKVAVIMGS---SSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVAS 78 (163)
T ss_dssp -CCCEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred CCCeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh
Confidence 35679999988 556888899999999999997766666 5578998776 24888888776666653 123
Q ss_pred CCCCccc
Q 014409 278 EFLAPVI 284 (425)
Q Consensus 278 ef~kPVi 284 (425)
--..|||
T Consensus 79 ~t~~PVI 85 (163)
T 3ors_A 79 LTTLPVI 85 (163)
T ss_dssp HCSSCEE
T ss_pred ccCCCEE
Confidence 3456665
No 50
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=41.48 E-value=28 Score=31.34 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=45.9
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEecCCCc-c-cccccCCCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQT-A-LLDSKEFLA 281 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~vaCPr~-s-i~d~~ef~k 281 (425)
+||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++... . +...++-..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~i 79 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI-LSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTER 79 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC-CSCCCCC---------CCCSEEEEESCCCC------CCSCSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCchhhHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHhhcCC
Confidence 5899998887777789999999999999976544332 223222 2222 26899998876432 1 222333446
Q ss_pred cccC
Q 014409 282 PVIT 285 (425)
Q Consensus 282 PViT 285 (425)
|+|+
T Consensus 80 PvV~ 83 (276)
T 2h0a_A 80 PVVL 83 (276)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7764
No 51
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=41.47 E-value=39 Score=30.05 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=53.8
Q ss_pred HHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCCC------CCCEEEEecCCCcccc-
Q 014409 203 EKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL- 274 (425)
Q Consensus 203 ~ka~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF~------eID~fV~vaCPr~si~- 274 (425)
++++....+|||.|+ ..=+.+.+...+.|+.-|..+-+-+++ .=+|++|..|. ++++||.+|==...|-
T Consensus 16 ~~~~~~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg 92 (182)
T 1u11_A 16 DKAASAPVVGIIMGS---QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPG 92 (182)
T ss_dssp ----CCCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH
T ss_pred hhhcCCCEEEEEECc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHH
Confidence 345556789999998 556888899999999999997666665 55788887663 3787777766665543
Q ss_pred -cccCCCCccc
Q 014409 275 -DSKEFLAPVI 284 (425)
Q Consensus 275 -d~~ef~kPVi 284 (425)
-..--.+|||
T Consensus 93 vvA~~t~~PVI 103 (182)
T 1u11_A 93 MCAAWTRLPVL 103 (182)
T ss_dssp HHHHHCSSCEE
T ss_pred HHHhccCCCEE
Confidence 1223456665
No 52
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=41.45 E-value=14 Score=33.98 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=42.3
Q ss_pred HhcCCeEEEEEcCCcc--cCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH---HhcC-C--CCCCEEEEecC
Q 014409 205 AKDANIIGVLVGTLGV--AGYLHMIHQMKELITKAGKKAYTLVMGKPNPA---KLAN-F--PECDVFINVSC 268 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~--q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~a---KLaN-F--~eID~fV~vaC 268 (425)
.+..++||+|+..... ..+..+++.+++.++++|.+..++.... +++ .+.+ + ..+|.+|+.+.
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-AKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-GGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-chhHHHHHHHHHHcCCccEEEEecC
Confidence 4567899999998764 5678999999999999887765554332 111 1111 1 36999998754
No 53
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=41.37 E-value=99 Score=24.72 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=39.2
Q ss_pred EEEcCCcccCcHHHHHHHHHHHHHcCCcE--EEEEcCCCCHHHhcCCCCCCEEEEecCCCcccccccCC-CCcccC
Q 014409 213 VLVGTLGVAGYLHMIHQMKELITKAGKKA--YTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEF-LAPVIT 285 (425)
Q Consensus 213 IlvgTl~~q~~~~~i~~Lk~li~~~GKk~--Y~~~vgkln~aKLaNF~eID~fV~vaCPr~si~d~~ef-~kPViT 285 (425)
++++.-|..-..-+..+|++.+++.|... ....+.++.. .+.++|+++.+ |... .+| .+|++.
T Consensus 25 lvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~~~~DlIist--~~l~----~~~~~ipvi~ 90 (113)
T 1tvm_A 25 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----YMDGVHLICTT--ARVD----RSFGDIPLVH 90 (113)
T ss_dssp EEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----STTSCSEEEES--SCCC----CCSTTCCEEC
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----ccCCCCEEEEC--Cccc----cccCCCCEEE
Confidence 55666566666668999999999999864 3344444422 23468855554 3332 345 678865
No 54
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=41.18 E-value=23 Score=33.50 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=45.6
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEecCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 269 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~vaCP 269 (425)
.++||+|+..+.-..+..+++.+++.++++|....++.. .-++++.. ++ ..+|.+|+.+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-DYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 568999999988888899999999999999988755443 33554422 11 269999997654
No 55
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=41.14 E-value=64 Score=28.43 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=54.1
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCC------CCCCEEEEecCCCcccc--cc
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DS 276 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~ 276 (425)
..+..||||.|+ ..=+.+.+...+.|++-|..+-+-++| .=+|++|..| .++++||.+|=-...|- -.
T Consensus 10 ~~~P~V~IimGS---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA 86 (173)
T 4grd_A 10 HSAPLVGVLMGS---SSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLA 86 (173)
T ss_dssp CSSCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHH
T ss_pred CCCCeEEEEeCc---HhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhe
Confidence 346789999998 556889999999999999986655555 4568888766 35788877776665553 12
Q ss_pred cCCCCccc
Q 014409 277 KEFLAPVI 284 (425)
Q Consensus 277 ~ef~kPVi 284 (425)
.--.+|||
T Consensus 87 ~~t~~PVI 94 (173)
T 4grd_A 87 AKTTVPVL 94 (173)
T ss_dssp HHCCSCEE
T ss_pred ecCCCCEE
Confidence 33456665
No 56
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=40.48 E-value=49 Score=29.85 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=44.6
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 270 (425)
+..++||+++..+.-..+..+++.+++.++++|.+..++. ..-++++. .++ ..+|.+|+.++..
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-AWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc-CCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 4467999999887767778999999999999998765543 34455442 222 3699999877653
No 57
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=40.37 E-value=49 Score=26.39 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=44.1
Q ss_pred EEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEc--CCCCHHHhcCCCCCCEEEEecCCCcccc--c----ccCCCCcccC
Q 014409 214 LVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM--GKPNPAKLANFPECDVFINVSCAQTALL--D----SKEFLAPVIT 285 (425)
Q Consensus 214 lvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~v--gkln~aKLaNF~eID~fV~vaCPr~si~--d----~~ef~kPViT 285 (425)
++..-|... --+++++++.++++|...-+..+ +++.. ++ .+.|++++. |+.... + ..++.-|+|.
T Consensus 8 l~Cg~G~sT-S~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-~~---~~~Dvil~~--pqv~~~~~~~~~~~~~~~v~vI~ 80 (106)
T 1e2b_A 8 LFSSAGMST-SLLVSKMRAQAEKYEVPVIIEAFPETLAGE-KG---QNADVVLLG--PQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_dssp EECSSSTTT-HHHHHHHHHHHHHSCCSEEEEEECSSSTTH-HH---HHCSEEEEC--TTSGGGHHHHHHHSSSSCCCBCC
T ss_pred EECCCchhH-HHHHHHHHHHHHHCCCCeEEEEecHHHHHh-hc---cCCCEEEEc--cchhhhHHHHHHHhcCCCceEEC
Confidence 444445544 47899999999999998655443 34432 23 346866644 666532 2 1246788899
Q ss_pred HHHHHH
Q 014409 286 PFEAML 291 (425)
Q Consensus 286 P~Elev 291 (425)
|..+..
T Consensus 81 ~~~yg~ 86 (106)
T 1e2b_A 81 SLLYGK 86 (106)
T ss_dssp HHHHTT
T ss_pred HHHccC
Confidence 887743
No 58
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=39.78 E-value=56 Score=28.85 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=56.1
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCC------CCCCEEEEecCCCcccc--cccC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKE 278 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~e 278 (425)
...+|||.|+ ..=+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...|- -..-
T Consensus 7 ~~~V~IimgS---~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 7 RPRVGVIMGS---DSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp CCSEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 4579999988 556888899999999999997766666 5579999888 57898888877666653 1233
Q ss_pred CCCccc
Q 014409 279 FLAPVI 284 (425)
Q Consensus 279 f~kPVi 284 (425)
-.+|||
T Consensus 84 t~~PVI 89 (174)
T 3lp6_A 84 TPLPVI 89 (174)
T ss_dssp CSSCEE
T ss_pred cCCCEE
Confidence 556765
No 59
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=39.54 E-value=70 Score=28.00 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=54.2
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCC------CCCCEEEEecCCCcccc--cccCCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEFL 280 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~ef~ 280 (425)
.+|||.|+ ..=+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...|- -...-.
T Consensus 7 ~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~ 83 (166)
T 3oow_A 7 QVGVIMGS---KSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTT 83 (166)
T ss_dssp EEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCS
T ss_pred eEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccC
Confidence 69999988 556888899999999999987666666 5578888777 45899988887777653 233345
Q ss_pred Cccc
Q 014409 281 APVI 284 (425)
Q Consensus 281 kPVi 284 (425)
.|||
T Consensus 84 ~PVI 87 (166)
T 3oow_A 84 LPVL 87 (166)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 6775
No 60
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=38.68 E-value=71 Score=28.17 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=55.5
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCC------CCCCEEEEecCCCcccc--cccCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEF 279 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~ef 279 (425)
..+|||.|+ ..=+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...|- -..--
T Consensus 13 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 89 (174)
T 3kuu_A 13 VKIAIVMGS---KSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKT 89 (174)
T ss_dssp CCEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTC
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcc
Confidence 369999988 556888899999999999997776666 5679999887 45898888887776653 23345
Q ss_pred CCccc
Q 014409 280 LAPVI 284 (425)
Q Consensus 280 ~kPVi 284 (425)
.+|||
T Consensus 90 ~~PVI 94 (174)
T 3kuu_A 90 LVPVL 94 (174)
T ss_dssp SSCEE
T ss_pred CCCEE
Confidence 67776
No 61
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=38.09 E-value=13 Score=34.30 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=43.6
Q ss_pred HhcCCeEEEEE-----cCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------hcCCCCCCEEEEecCC
Q 014409 205 AKDANIIGVLV-----GTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCA 269 (425)
Q Consensus 205 a~~A~~iGIlv-----gTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK-------LaNF~eID~fV~vaCP 269 (425)
.+..++||+|+ ..+.-..+..+++.+++.++++|.+..++..+ -++++ |.+ ..+|.+|+.+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~-~~vdGiI~~~~~ 78 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN-NMNDLMDEVYKMIKQ-RMVDAFILLYSK 78 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC-SHHHHHHHHHHHHHT-TCCSEEEESCCC
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC-CChHHHHHHHHHHHh-CCcCEEEEcCcc
Confidence 45578999999 45556677899999999999999876544332 22222 222 369999997654
No 62
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=37.60 E-value=18 Score=33.81 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=42.2
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCCc
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 271 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr~ 271 (425)
+++||+++.+++-..+..+++.+++.+++.|.+..+.....-++++- .++ ..+|++|+.+....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~ 72 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPD 72 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 46899999887766677888888888888885543222234555432 222 26898888765443
No 63
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.35 E-value=37 Score=30.89 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=42.9
Q ss_pred cCCeEEEEEcC-C---cccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCH-------HHhcCCCCCCEEEEecCC
Q 014409 207 DANIIGVLVGT-L---GVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP-------AKLANFPECDVFINVSCA 269 (425)
Q Consensus 207 ~A~~iGIlvgT-l---~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~-------aKLaNF~eID~fV~vaCP 269 (425)
..++||+|+.. + .-..+..+++.+++.++++|.+..++.. .-++ ..|.+ ..+|.+|+.+..
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~-~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-SEDRSQIDIYRDLIRS-GNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-CSSTTCCHHHHHHHHT-TCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-CCchHHHHHHHHHHHc-CCCCEEEEeecC
Confidence 46789999988 7 6677789999999999999976544322 2222 22222 369999987754
No 64
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=37.16 E-value=59 Score=29.40 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=48.8
Q ss_pred HhcCCeEEEEEcCC-cccCcHHHHHHHHHHHHHc-CCcEEEEEc--CCCCHHHh----cCC--CCCCEEEEecCCC
Q 014409 205 AKDANIIGVLVGTL-GVAGYLHMIHQMKELITKA-GKKAYTLVM--GKPNPAKL----ANF--PECDVFINVSCAQ 270 (425)
Q Consensus 205 a~~A~~iGIlvgTl-~~q~~~~~i~~Lk~li~~~-GKk~Y~~~v--gkln~aKL----aNF--~eID~fV~vaCPr 270 (425)
.+...+||+++... .-..+..+++.+++.++++ |....+... +.-++++. .++ ..+|.+|+.++..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 34578999999998 7777889999999999999 888777664 44566442 122 3699999987754
No 65
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=37.10 E-value=42 Score=30.21 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=43.0
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEecC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 268 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~vaC 268 (425)
++||+++..+.-..+..+++.+++.++++|.+..+.. ..-++++ +.++ ..+|..|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6899999988877888999999999999997765543 3334433 2222 25899888654
No 66
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=36.99 E-value=49 Score=31.26 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=43.8
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEec
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVS 267 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~va 267 (425)
+...+||+|+..+.-..+..+++.+++.++++|....+...+.-++++ |.++ ..+|.+|+.+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 346799999998876777899999999999999887666555433332 2222 3699998875
No 67
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=36.17 E-value=20 Score=33.00 Aligned_cols=63 Identities=6% Similarity=-0.091 Sum_probs=44.4
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC-CHHHhc----CC--CCCCEEEEecCCCc
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKLA----NF--PECDVFINVSCAQT 271 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkl-n~aKLa----NF--~eID~fV~vaCPr~ 271 (425)
.+||+|+..+.-..+..+++-+++.+++.|.+.-++..... ++++.. ++ ..+|+.|+.+....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 57999999887777789999999999999977655543322 444321 11 26899988766544
No 68
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=36.02 E-value=24 Score=32.32 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=40.8
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHH----hcCC--CCCCEEEEecCCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 270 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GK-k~Y~~~vgkln~aK----LaNF--~eID~fV~vaCPr 270 (425)
.++||+|+..+.-..+..+++-+++.++++|. +..++. ..-++++ +.++ ..+|.+|+.++..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 70 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND-SQNDQSKQNDQIDVLLAKGVKALAINLVDP 70 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSSG
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 35789998887766777888888888888886 543333 3334433 2222 3688888876544
No 69
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=34.94 E-value=85 Score=27.83 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=50.9
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCCC------CCCEEEEecCCCcccc--cccCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSKEF 279 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF~------eID~fV~vaCPr~si~--d~~ef 279 (425)
..||||.|+ +.=+.+.+...+.|++-|..+-+-+++ .=+|++|..|. ++++||..|=-...|- -...-
T Consensus 23 p~V~IimGS---~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 23 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred ccEEEEECC---HhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 469999998 455888999999999999987666665 55688887662 4566665554444442 23345
Q ss_pred CCccc
Q 014409 280 LAPVI 284 (425)
Q Consensus 280 ~kPVi 284 (425)
..|||
T Consensus 100 ~~PVI 104 (181)
T 4b4k_A 100 NLPVI 104 (181)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 67776
No 70
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=34.54 E-value=48 Score=28.76 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=41.9
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCC-----HHHhcCC-----CCCCEEEEecCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-----PAKLANF-----PECDVFINVSCA 269 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln-----~aKLaNF-----~eID~fV~vaCP 269 (425)
-+||||++.-...=.-.+++.-++.|+++|....++.|=--. ..||+.- ..+|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~V 83 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTV 83 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeee
Confidence 579999987543333366667777888899665555553221 2566655 679999999997
No 71
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=34.51 E-value=28 Score=34.03 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=39.5
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCC--CCCEEEE
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFIN 265 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~--eID~fV~ 265 (425)
.+..++||+|+. ..-..+..+++-+++.++++|....++..... .+.+..+. .+|.+|+
T Consensus 22 ~~~s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~-~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 22 FTKRHRITLLFN-ANKAYDRQVVEGVGEYLQASQSEWDIFIEEDF-RARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCCCEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCCEEEEECC-C-C--------CCCSEEEE
T ss_pred CCCCceEEEEeC-CcchhhHHHHHHHHHHHHhcCCCeEEEecCCc-cchhhhHhcCCCCEEEE
Confidence 345679999995 55556679999999999999988777664432 22233332 6899987
No 72
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=34.27 E-value=36 Score=30.44 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=44.0
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEc-CCCCHHHh----cCC--CC-CCEEEEecCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAKL----ANF--PE-CDVFINVSCA 269 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~v-gkln~aKL----aNF--~e-ID~fV~vaCP 269 (425)
+||+|+....-..+..+++.+++.++++|.+..++.. +.-++++- .++ .. +|.+|+.++.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 6899998888778889999999999999987665544 34555532 222 15 8999988764
No 73
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=34.01 E-value=1.3e+02 Score=28.30 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=16.4
Q ss_pred eEEEEEcCCcccCc-HHHHHHHHHHHHHcCCcEEEEE
Q 014409 210 IIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTLV 245 (425)
Q Consensus 210 ~iGIlvgTl~~q~~-~~~i~~Lk~li~~~GKk~Y~~~ 245 (425)
++.+|++..++.+. ..+.+++++.++++|..+-++.
T Consensus 10 ~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~ 46 (304)
T 3s40_A 10 KVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILH 46 (304)
T ss_dssp SEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEE
Confidence 44455555444443 2344445555555544443333
No 74
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=33.68 E-value=72 Score=31.01 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=45.8
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc-CCCCCCEEEEecCCCc
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 271 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa-NF~eID~fV~vaCPr~ 271 (425)
..+.|+.+|.. .+...+++.+.+.+++.|...-++-+.+.++..+. .+.+.|++| +++|.-
T Consensus 257 ~kv~iiy~S~~-GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~ii-igsP~y 318 (414)
T 2q9u_A 257 KKVTVVLDSMY-GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVA-FASPTL 318 (414)
T ss_dssp SEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEE-EECCCB
T ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEE-EEcCcc
Confidence 58899999975 46789999999999999988888888888876332 334557655 556653
No 75
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=33.30 E-value=65 Score=30.08 Aligned_cols=63 Identities=13% Similarity=0.243 Sum_probs=46.5
Q ss_pred hcCCeEEEEEcC--CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgT--l~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
+..++||+|+.. +....+..+++.+++.++++|.+..++. ..-++++- .++ ..+|.+|+.+..
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 457899999998 7777788999999999999998876555 44444432 112 269999987654
No 76
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.30 E-value=21 Score=32.92 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=45.3
Q ss_pred hcCCeEEEEEcC-----CcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------hcCCCCCCEEEEecCCC
Q 014409 206 KDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCAQ 270 (425)
Q Consensus 206 ~~A~~iGIlvgT-----l~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK-------LaNF~eID~fV~vaCPr 270 (425)
+..++||+|+.. +.-..+..+++.+++.++++|.+..++.. .-++++ |.+ ..+|.+|+.++..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~ 94 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVS-ENSGDLYHEVKTMIQS-KSVDGFILLYSLK 94 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCC-SSHHHHHHHHHHHHHT-TCCSEEEESSCBT
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHh-CCCCEEEEeCCcC
Confidence 457899999998 77777889999999999999977554433 333332 222 3699999977643
No 77
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=33.28 E-value=43 Score=28.48 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=41.5
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
.+-|+-+|.. -+...+++.|.+.+.+.|...-++-+.+.++..|.+ .|. |+++||-
T Consensus 11 ki~I~Y~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~---~d~-ii~g~pt 66 (167)
T 1ykg_A 11 GITIISASQT-GNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIAS---EKL-LIVVTST 66 (167)
T ss_dssp -CEEEEECSS-SHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGG---CSE-EEEEEEC
T ss_pred eEEEEEECCc-hHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhcc---CCe-EEEEEcc
Confidence 4679999987 456899999999999999888888888777766544 464 4445553
No 78
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=33.24 E-value=2e+02 Score=25.36 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=52.3
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC---------CCCHHHhcC----C--C--CCCEEEEecC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG---------KPNPAKLAN----F--P--ECDVFINVSC 268 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg---------kln~aKLaN----F--~--eID~fV~vaC 268 (425)
..+++|||| ++.. ..+-...++.+++.|.......-. +++++.+.. + + +.|+. +++|
T Consensus 106 ~g~~rvgvl-t~~~----~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaI-vLgC 179 (223)
T 2dgd_A 106 LNVRKLWIG-TPYI----KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAV-YIAC 179 (223)
T ss_dssp TTCCEEEEE-ESSC----HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEE-EECC
T ss_pred cCCCeEEEE-eCCc----hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEE-EEeC
Confidence 446899999 3533 444557888888899886554332 234444421 1 2 56765 5569
Q ss_pred CCcccc---c--ccCCCCcccCHHHHHH
Q 014409 269 AQTALL---D--SKEFLAPVITPFEAML 291 (425)
Q Consensus 269 Pr~si~---d--~~ef~kPViTP~Elev 291 (425)
=+.++. + .+++.+|||++-++.+
T Consensus 180 T~l~~~~~~~~l~~~~g~PVids~~~~a 207 (223)
T 2dgd_A 180 TALSTYEAVQYLHEDLDMPVVSENAAAM 207 (223)
T ss_dssp TTSCCTTHHHHHHHHHTSCEEEHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCCEEEhHHHHH
Confidence 999974 2 3457899999988765
No 79
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=33.00 E-value=57 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=37.0
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
.+.|+.+|..| +...+++.|.+.+... ...-++-+.+.++.+|.+ .|. |+++||-
T Consensus 2 kilIvY~S~tG-nT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~---~d~-ii~g~pt 56 (169)
T 1czn_A 2 KIGLFYGTQTG-VTQTIAESIQQEFGGE-SIVDLNDIANADASDLNA---YDY-LIIGCPT 56 (169)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGG---CSE-EEEECCE
T ss_pred eEEEEEECCCc-HHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhh---CCE-EEEEecc
Confidence 57899999874 6678888888887543 345566677666665544 464 4556664
No 80
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=32.93 E-value=31 Score=31.54 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=43.9
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 270 (425)
.+||+++.++.-..+..+++-+++.++++|.+..++.. -++++- .++ ..+|.+|+.+...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~ 68 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PDGEKTLNAIDSLAASGAKGFVICTPDP 68 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC--CSHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 47999999988778889999999999999977655444 255542 222 2689999887643
No 81
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=32.77 E-value=1.1e+02 Score=28.43 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
+..++||+|+....-..+..+++.+++.++++|.+..++. ..-++++. ..+ ..+|.+|+.+..
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 5678999999888767778999999999999998765543 34455542 222 369999987654
No 82
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=32.02 E-value=62 Score=28.87 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH-------hcCCCCCCEEEEecCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK-------LANFPECDVFINVSCA 269 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK-------LaNF~eID~fV~vaCP 269 (425)
.++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++ |.+ ..+|.+|+.++.
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~-~~vdgii~~~~~ 69 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSD-YSIEQEEKLLSTFLE-SRPAGVVLFGSE 69 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECT-TCHHHHHHHHHHHHT-SCCCCEEEESSC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCC-CCHHHHHHHHHHHHh-cCCCEEEEeCCC
Confidence 4689999998877777899999999999999876555433 34432 222 368999988764
No 83
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=32.01 E-value=58 Score=30.77 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=43.7
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
..++||+|+..+.-..+..+++.+++.++++|.+..++..+ -++++. ..+ ..+|.+|+.+..
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSN-EDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECT-TCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45789999988776777899999999999999887665543 354432 222 368999887653
No 84
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=31.44 E-value=20 Score=37.85 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=47.9
Q ss_pred cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCC--CCEEEEecCC
Q 014409 207 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE--CDVFINVSCA 269 (425)
Q Consensus 207 ~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~e--ID~fV~vaCP 269 (425)
..+.+.|+-||..| +...++++|.+.++++|.+.-++-+.+.+++.|.++++ -+. |++.||
T Consensus 17 ~~~~i~I~YgS~tG-nte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~-vi~~~s 79 (618)
T 3qe2_A 17 TGRNIIVFYGSQTG-TAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNAL-VVFCMA 79 (618)
T ss_dssp HTCSEEEEEECSSS-HHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCE-EEEEEE
T ss_pred cCCeEEEEEECChh-HHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcE-EEEEcC
Confidence 45779999999863 55789999999999999999888899999998877654 344 444454
No 85
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=31.23 E-value=50 Score=30.77 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC
Q 014409 193 KILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 247 (425)
Q Consensus 193 r~L~rRy~~I~ka~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg 247 (425)
..++.......+.+.+++|.|. | +||.|--.+.-.|-..+.+.|+|+-++=.+
T Consensus 26 ~~l~~~l~~~~~~~~~~vI~v~-~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 26 GSVQVHLDEADKITGAKVFAVY-G-KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp --------------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred chhhhhhccccccCCceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3344444445567778899888 7 999999999999999999999998888665
No 86
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.01 E-value=55 Score=30.48 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=43.7
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~vaCP 269 (425)
+...+||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.+..
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-DQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-CSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-CCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34679999998887777889999999999999987665543 333332 2233 369999987654
No 87
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=30.69 E-value=64 Score=29.27 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=42.8
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHH-------HhcCC--CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-------KLANF--PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~a-------KLaNF--~eID~fV~vaCP 269 (425)
+...+||+|+..+.-..+..+++-+++.++++|.+..++..+ -+++ .+.++ ..+|.+|+.+..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGC-GESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCC-SSSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CchhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 456799999988776677899999999999999876544332 2222 22222 268999887654
No 88
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=30.32 E-value=49 Score=30.12 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc----CC--CCCCEEEEecC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSC 268 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa----NF--~eID~fV~vaC 268 (425)
..+||+++...+-..+..+++-+++.+++.|.+..++....-++++.. .+ ..+|.+|+.+.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 457788877666556667777788777777754332222445554421 11 25777776654
No 89
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=29.74 E-value=1.4e+02 Score=22.36 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHh---cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC
Q 014409 195 LKRRYYLVEKAK---DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 247 (425)
Q Consensus 195 L~rRy~~I~ka~---~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg 247 (425)
|.|-..-++||. .|+.+-|-++.-.-..-.++++.+.+++++.|.|-.-+-|+
T Consensus 31 leralqelekalaragarnvqitisaendeqakelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 31 LERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEEc
Confidence 334444455553 48899999988777777899999999999999998776654
No 90
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=29.70 E-value=1.3e+02 Score=26.74 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCC------CCCCEEEEecCCCcccc--cccC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKE 278 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF------~eID~fV~vaCPr~si~--d~~e 278 (425)
-..+|||.|+ ..=+++.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...|- -..-
T Consensus 13 ~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 89 (183)
T 1o4v_A 13 VPRVGIIMGS---DSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASI 89 (183)
T ss_dssp -CEEEEEESC---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEecc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhc
Confidence 4689999988 556888899999999999997666665 5578888777 34888877776665553 2233
Q ss_pred CCCccc
Q 014409 279 FLAPVI 284 (425)
Q Consensus 279 f~kPVi 284 (425)
-.+|||
T Consensus 90 t~~PVI 95 (183)
T 1o4v_A 90 THLPVI 95 (183)
T ss_dssp CSSCEE
T ss_pred cCCCEE
Confidence 556665
No 91
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=29.05 E-value=1e+02 Score=30.62 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=48.4
Q ss_pred CCeEEEEEcCCcc--cCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHHhcCCCC-CCEEEE
Q 014409 208 ANIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFPE-CDVFIN 265 (425)
Q Consensus 208 A~~iGIlvgTl~~--q~~~~~i~~Lk~li~~~GK-k~Y~~~vgkln~aKLaNF~e-ID~fV~ 265 (425)
++..||-+=+.+. ..-..+++++++.+.++|. +.-+++.|.||+++++.+.+ +|+|-+
T Consensus 233 ~~~d~IrlDs~~~~~gd~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~vD~~gv 294 (395)
T 2i14_A 233 KKLFAVRLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVDAFGV 294 (395)
T ss_dssp GGCCEEEECCCTTTCSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGGCSEEEE
T ss_pred cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHhCCEEEe
Confidence 6788999988776 6677899999999999984 46889999999999988843 888875
No 92
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=28.38 E-value=14 Score=20.93 Aligned_cols=8 Identities=50% Similarity=0.696 Sum_probs=6.5
Q ss_pred CCccCCCC
Q 014409 387 RSYHGLEM 394 (425)
Q Consensus 387 Rtw~GL~~ 394 (425)
-+|+|||.
T Consensus 8 cswrglen 15 (23)
T 3ox7_P 8 CSWRGLEN 15 (26)
T ss_pred cccccchh
Confidence 57999984
No 93
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=28.35 E-value=1.2e+02 Score=32.21 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHH-HcCCcEEEEEcCCCCHHHhcCCCCCCEEEEe
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELIT-KAGKKAYTLVMGKPNPAKLANFPECDVFINV 266 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~-~~GKk~Y~~~vgkln~aKLaNF~eID~fV~v 266 (425)
.+.+.|+.||..| +...++++|.+.++ +.|.++-++-+.+.+++.|.+++ |.+|++
T Consensus 49 ~~ki~IlY~S~tG-nte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~--~~vi~~ 105 (682)
T 2bpo_A 49 NKNYLVLYASQTG-TAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVP--VIVSIF 105 (682)
T ss_dssp TCSEEEEEECSSS-HHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCC--SEEEEE
T ss_pred CCeEEEEEECCch-HHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcC--CeEEEE
Confidence 3579999999874 56789999999999 88999999999999998887664 555443
No 94
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=28.16 E-value=99 Score=26.62 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=42.0
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCc---EEEEEc-CCCC----HHHhcCCCCCCEEEEecCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVM-GKPN----PAKLANFPECDVFINVSCA 269 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk---~Y~~~v-gkln----~aKLaNF~eID~fV~vaCP 269 (425)
+|||++++-...=.-.+++.-++.|+++|-+ ..++.| |-.- ..||+.-..+|++|-++|.
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~V 81 (154)
T 1hqk_A 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVL 81 (154)
T ss_dssp CEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEE
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 6999998854433346777777888889853 344433 3222 3677887789999999997
No 95
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=27.94 E-value=1e+02 Score=28.63 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=45.0
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC--CCCCEEEEecC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 268 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF--~eID~fV~vaC 268 (425)
+...+||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-DNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-CCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45789999998877677789999999999999987655543 334433 2222 36999998775
No 96
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=27.87 E-value=99 Score=26.82 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=54.6
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCCC-------CCCEEEEecCCCcccc--cccC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP-------ECDVFINVSCAQTALL--DSKE 278 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF~-------eID~fV~vaCPr~si~--d~~e 278 (425)
..+|||.|+ ..=+.+.+...+.|++-|..+-+-+++ .=+|++|..|. ++++||.+|==...|- -..-
T Consensus 3 ~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~ 79 (159)
T 3rg8_A 3 PLVIILMGS---SSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGF 79 (159)
T ss_dssp CEEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHH
T ss_pred CeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhc
Confidence 368999988 556888899999999999987766665 55799998773 4788888877766653 2333
Q ss_pred CCCccc
Q 014409 279 FLAPVI 284 (425)
Q Consensus 279 f~kPVi 284 (425)
-.+|||
T Consensus 80 t~~PVI 85 (159)
T 3rg8_A 80 VKGATI 85 (159)
T ss_dssp SSSCEE
T ss_pred cCCCEE
Confidence 567776
No 97
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=27.87 E-value=43 Score=30.38 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCP 269 (425)
+...+||+++.. .-..+..+++.+++.+++.|.+..++.. .-++++. ..+ ..+|.+|+.++.
T Consensus 6 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 6 GRSNIIAFIVPD-QNPFFTEVLTEISHECQKHHLHVAVASS-EENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp -CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCEEEEEEC-TTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCCEEEEEECC-CCchHHHHHHHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 345689999988 5556678999999999999987655443 3455432 222 368998887664
No 98
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=27.70 E-value=30 Score=36.75 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=45.5
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCH-----HHhcCCCCCCEEEEecCCCcc
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP-----AKLANFPECDVFINVSCAQTA 272 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~-----aKLaNF~eID~fV~vaCPr~s 272 (425)
.+|.++|| +++. ..|++.+..+.+.|+++|-. -+++.|.+-. ++++. .+|.|+-.+|+-..
T Consensus 559 ~~adiv~l--Ssl~-~~~~~~~~~v~~~Lk~aG~~-~V~vgG~P~~d~~~~~~~~~--G~D~~~~~g~~~~~ 624 (637)
T 1req_B 559 SGAQVADL--CSSA-KVYAQQGLEVAKALKAAGAK-ALYLSGAFKEFGDDAAEAEK--LIDGRLFMGMDVVD 624 (637)
T ss_dssp HTCSEEEE--ECCH-HHHHHHHHHHHHHHHHTTCS-EEEEESCGGGGGGGHHHHHH--HCCCEECTTCCHHH
T ss_pred cCCCEEEE--eccc-HHHHHHHHHHHHHHHhCCCC-eEEEeCCCCccchhhHHHHh--ccceEecCCcCHHH
Confidence 35667665 4443 67999999999999999983 3567787643 57776 89999999987543
No 99
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=27.64 E-value=74 Score=29.81 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=42.2
Q ss_pred CCeEEEEEcCCcc-cCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHH----hcCC----CCCCEEEEec
Q 014409 208 ANIIGVLVGTLGV-AGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF----PECDVFINVS 267 (425)
Q Consensus 208 A~~iGIlvgTl~~-q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aK----LaNF----~eID~fV~va 267 (425)
..+||+|+..... ..+..+++-+++.+++.|.+..++. ..-++++ +.++ ..+|+.|+++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-AERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-CCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4689999988766 5567889999999999998766553 4445554 2222 3689988875
No 100
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=27.28 E-value=95 Score=26.62 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=44.0
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHH-cCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCCc
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITK-AGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 271 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~-~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr~ 271 (425)
.+-||.+|.. .+...+++.+.+.+++ .|-..-++-+.+.+.++|.+. |++ ++++|--
T Consensus 6 kiliiy~S~~-GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~a---D~i-i~gsP~y 63 (188)
T 2ark_A 6 KVLVIYDTRT-GNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWA---DGL-AVGSPTN 63 (188)
T ss_dssp EEEEEECCSS-SHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHC---SEE-EEEEECB
T ss_pred EEEEEEECCC-cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhC---CEE-EEEeCcc
Confidence 5788899954 4667899999999998 888888888999888888654 654 4566653
No 101
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=27.00 E-value=1.1e+02 Score=29.30 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=45.3
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhc-CCCCCCEEEEecCCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQ 270 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLa-NF~eID~fV~vaCPr 270 (425)
...+.|+.+|.. .+...+++.+.+.+.+.|...-++-+.+.+++.+. ++.+.|.+ ++++|.
T Consensus 256 ~~k~~i~~~S~~-gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~i-iigsP~ 317 (404)
T 2ohh_A 256 DERVTVIYDTMH-GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAI-ALGAPT 317 (404)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEE-EEECCE
T ss_pred CCcEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEE-EEECcc
Confidence 357778888865 46789999999999988988888999988876442 34456755 456664
No 102
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=26.77 E-value=1.7e+02 Score=24.82 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=31.1
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK 248 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgk 248 (425)
..+-||.++.. .+...+++.+.+.+++.|-..-++-+.+
T Consensus 6 ~kilii~~S~~-g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRH-GATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCCC-ChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 36889999974 4678899999999999998777776665
No 103
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=26.66 E-value=66 Score=32.03 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=47.6
Q ss_pred CeEEEEEcCCcc--cCcHHHHHHHHHHHHHcCC-cEEEEEcCCCCHHHhcCCC--CCCEEEE
Q 014409 209 NIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFP--ECDVFIN 265 (425)
Q Consensus 209 ~~iGIlvgTl~~--q~~~~~i~~Lk~li~~~GK-k~Y~~~vgkln~aKLaNF~--eID~fV~ 265 (425)
+..||.+=+.+. ..-..+++++++.+.++|. +.-+++.|.||+++++.+. .+|+|-+
T Consensus 236 ~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gv 297 (398)
T 2i1o_A 236 KVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGV 297 (398)
T ss_dssp CCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEe
Confidence 778899988765 6667899999999999983 4688999999999998874 5899975
No 104
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.29 E-value=70 Score=29.74 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=45.5
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CC--CCEEEEecCCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PE--CDVFINVSCAQ 270 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~e--ID~fV~vaCPr 270 (425)
+...+||+|+..++-..+..+++.+++.+++.|.+..++. ..-++++. ..+ .. +|.+|+.++..
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLT-TEGSSEKGIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEE-CTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEec-CCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 3467899999888777778999999999999998865554 34444432 222 25 89988876543
No 105
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=25.76 E-value=1.1e+02 Score=25.63 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=37.4
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCCCCCEEEEecCCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 270 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~eID~fV~vaCPr 270 (425)
..+.|+-+|..| +...+++.|.+.+.+. ..-++-+.+.+++.|.+ .|.+ +++||-
T Consensus 2 mkilIiY~S~tG-nT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~l~~---~d~i-i~g~p~ 56 (169)
T 1obo_A 2 KKIGLFYGTQTG-KTESVAEIIRDEFGND--VVTLHDVSQAEVTDLND---YQYL-IIGCPT 56 (169)
T ss_dssp CSEEEEECCSSS-HHHHHHHHHHHHHCTT--TEEEEETTTCCGGGGGG---CSEE-EEEEEE
T ss_pred CeEEEEEECCCc-hHHHHHHHHHHHhCcC--CcEEEEcccCCHHHHhh---CCEE-EEEEee
Confidence 468899999874 5678888888887653 55566777776665544 4654 445554
No 106
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=25.22 E-value=39 Score=31.25 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=42.9
Q ss_pred hcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCC----cEEE-EEcCCCCHHHhcCC------CCCCEEEEecCC
Q 014409 206 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGK----KAYT-LVMGKPNPAKLANF------PECDVFINVSCA 269 (425)
Q Consensus 206 ~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GK----k~Y~-~~vgkln~aKLaNF------~eID~fV~vaCP 269 (425)
...++||||. ++....+.++++-+++.++++|. +..+ +.-.+=++++..++ ..+|..|+++-+
T Consensus 6 ~~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~ 79 (302)
T 2qh8_A 6 AKTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP 79 (302)
T ss_dssp -CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH
T ss_pred cCCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH
Confidence 3568999874 66667788999999999999998 5433 33345555543221 268998887643
No 107
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=25.21 E-value=73 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHHcCCcEE-EEEcCCCCHHHhcCCCCCCEEEEecCC
Q 014409 231 KELITKAGKKAY-TLVMGKPNPAKLANFPECDVFINVSCA 269 (425)
Q Consensus 231 k~li~~~GKk~Y-~~~vgkln~aKLaNF~eID~fV~vaCP 269 (425)
.-||.+++-.+= ++-|.+||++ |++.|+.++++--
T Consensus 80 NVLLAEA~VPYd~v~EMdeIN~d----f~~tDv~lVIGAN 115 (186)
T 2bru_C 80 NVLLAEAKVPYDIVLEMDEINDD----FADTDTVLVIGAN 115 (186)
T ss_dssp HHHHHHHTCCTTTEEESCCCHHH----HHHCSEEEECBCG
T ss_pred eEEEEecCCCHHHHhhHHHHhcc----cccCCEEEEeccc
Confidence 334455554433 6889999987 8889999888754
No 108
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=25.10 E-value=58 Score=29.85 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=40.1
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh----cCC--CCCCEEEEecCCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 270 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL----aNF--~eID~fV~vaCPr 270 (425)
.+||+++.+.+-..+..+++-+++.+++.|....++. ..-++++. ..+ ..+|.+|+.++..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD-GQQKQENQIKAVRSFVAQGVDAIFIAPVVA 69 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 5789988886555556788888888888887754443 33344432 122 2588888876654
No 109
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=23.79 E-value=1.9e+02 Score=27.39 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=17.0
Q ss_pred eEEEEEcCCcccCc-HHHHHHHHHHHHHcCCcEEEEE
Q 014409 210 IIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTLV 245 (425)
Q Consensus 210 ~iGIlvgTl~~q~~-~~~i~~Lk~li~~~GKk~Y~~~ 245 (425)
.++||++..++.+. ..+.+++++.++++|..+.++.
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~ 62 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYA 62 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEE
Confidence 35555555544432 2444555555555554444333
No 110
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=23.78 E-value=1.7e+02 Score=23.71 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEE------EcCCCCHHHhcCCCCCCEEEEecCCCcccccccCC-C
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTL------VMGKPNPAKLANFPECDVFINVSCAQTALLDSKEF-L 280 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~------~vgkln~aKLaNF~eID~fV~vaCPr~si~d~~ef-~ 280 (425)
.++++|.-+.-|.+...-..+.|++..++.|...-+= +-+.|+++.+++= |+.++.+--. ++|..+| -
T Consensus 6 mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~A---d~VIiA~d~~--v~~~~RF~G 80 (111)
T 2kyr_A 6 KKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEA---TIIIHSVAVT--PEDNERFES 80 (111)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHC---SEEEEEESSC--CTTGGGGTT
T ss_pred ccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhC---CEEEEEeCCC--cCchhhcCC
Confidence 5688999999999999999999999999999875542 2358999988764 6655554422 3345556 5
Q ss_pred Cccc
Q 014409 281 APVI 284 (425)
Q Consensus 281 kPVi 284 (425)
|||+
T Consensus 81 K~v~ 84 (111)
T 2kyr_A 81 RDVY 84 (111)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 7775
No 111
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=23.29 E-value=1.1e+02 Score=26.39 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=41.1
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCCc---EEEEEc-CCCC----HHHhcCCCCCCEEEEecCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVM-GKPN----PAKLANFPECDVFINVSCA 269 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk---~Y~~~v-gkln----~aKLaNF~eID~fV~vaCP 269 (425)
+|||+++.....=.-.+++.-++.|+++|-+ ..++.| |-.- ..||+.-..+|++|-++|.
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 81 (154)
T 1rvv_A 14 KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTV 81 (154)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEE
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 6999998754433336777777888888854 344433 3222 3677777789999999997
No 112
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=22.99 E-value=1.1e+02 Score=26.76 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=52.8
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcC-CCCHHHhcCCC------CCCEEEEecCCCcccc--cccCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSKEF 279 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vg-kln~aKLaNF~------eID~fV~vaCPr~si~--d~~ef 279 (425)
..+|||.|+ ..=+++.+...+.|++-|..+-+-+++ .=+|++|..|. ++++||.+|=-...|- -..--
T Consensus 12 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 88 (170)
T 1xmp_A 12 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 88 (170)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTC
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhcc
Confidence 468999988 556888899999999999997666655 55688887763 3788777776666553 23334
Q ss_pred CCccc
Q 014409 280 LAPVI 284 (425)
Q Consensus 280 ~kPVi 284 (425)
.+|||
T Consensus 89 ~~PVI 93 (170)
T 1xmp_A 89 NLPVI 93 (170)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 66665
No 113
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=22.79 E-value=2e+02 Score=27.50 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=44.7
Q ss_pred CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHh-cCCCCCCEEEEecCCC
Q 014409 208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL-ANFPECDVFINVSCAQ 270 (425)
Q Consensus 208 A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKL-aNF~eID~fV~vaCPr 270 (425)
-+.+-|+-+|.. .+...+++.+.+.+++.|...-.+-+.+..+..| .++.+.|++| ++||-
T Consensus 252 ~~kv~i~y~S~~-Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii-~gsp~ 313 (402)
T 1e5d_A 252 TNKVVIFYDSMW-HSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVI-VGSPT 313 (402)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEE-EECCC
T ss_pred CCcEEEEEECCC-hhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEE-EECCc
Confidence 367888888864 3567889999999999998888888888887775 2344567655 45564
No 114
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=22.45 E-value=1.3e+02 Score=25.91 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=33.5
Q ss_pred eEEEEEcCCc-ccCcHHHHHHHHHH-HHHcCCcEEEEEcCCCCH
Q 014409 210 IIGVLVGTLG-VAGYLHMIHQMKEL-ITKAGKKAYTLVMGKPNP 251 (425)
Q Consensus 210 ~iGIlvgTl~-~q~~~~~i~~Lk~l-i~~~GKk~Y~~~vgkln~ 251 (425)
+|.||.||.. ..+...+++.+.+. ++++|-..-++-+.+++.
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~ 47 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDP 47 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCc
Confidence 5788999974 34567899999998 898898888888887754
No 115
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=21.94 E-value=2.8e+02 Score=24.85 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=40.7
Q ss_pred cCCeEEEEE--cCCcccCc----HHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCC--CCCEEEEec
Q 014409 207 DANIIGVLV--GTLGVAGY----LHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFINVS 267 (425)
Q Consensus 207 ~A~~iGIlv--gTl~~q~~----~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~--eID~fV~va 267 (425)
.+..+++.- .+.++|.. ++.++++++++.++|.+.-+.+-|-+|++.+..+. ..|++|+.+
T Consensus 134 ~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGS 202 (230)
T 1tqj_A 134 VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGS 202 (230)
T ss_dssp GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESH
T ss_pred cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECH
Confidence 566555332 22234544 67888888888888888888999999876554442 589999874
No 116
>2php_A Uncharacterized protein MJ0236; chlorine ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.03A {Methanocaldococcus jannaschii DSM2661} SCOP: c.74.1.2
Probab=21.65 E-value=57 Score=29.22 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.7
Q ss_pred CcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhh
Q 014409 21 ADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHA 62 (425)
Q Consensus 21 aD~iVHyGhaClsp~~~lpviYVf~~~~ld~~~~~~~~~~~~ 62 (425)
.|+|+|-|--- +-|++|||++.+.++..-+..+.+.+
T Consensus 145 PdvIyd~G~~G-----kEP~i~vfG~dp~ev~~kv~~l~~~~ 181 (192)
T 2php_A 145 PDIIYDRGGEG-----KEPMIRVLGRDAIEVVKKVEVIQKIY 181 (192)
T ss_dssp CSEEEECCBBT-----BCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCC-----cCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 59999998743 56899999999888866555555443
No 117
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=21.50 E-value=1.7e+02 Score=26.99 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCH--HHhcCC-CCCCEEEEecCCC
Q 014409 195 LKRRYYLVEKAK-DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP--AKLANF-PECDVFINVSCAQ 270 (425)
Q Consensus 195 L~rRy~~I~ka~-~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~--aKLaNF-~eID~fV~vaCPr 270 (425)
+.+...++.+.. +++++|||.++ +-.+....++.+++.+++.|.+.....+...+. +.+... +++|++.......
T Consensus 126 ~~~~l~l~~~l~P~~k~vgvi~~~-~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 126 VEQHVELIKEILPNVKSIGVVYNP-GEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCC-CcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcc
Confidence 345667777776 89999999876 446667888999999999999887776665542 112222 4688887654332
Q ss_pred cc-----cc-cccCCCCcccCHHHHHHhhCCCCccccceeeccccc
Q 014409 271 TA-----LL-DSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL 310 (425)
Q Consensus 271 ~s-----i~-d~~ef~kPViTP~ElevAL~~~~~W~g~y~~Df~~l 310 (425)
.. +. -..+...||++.++..+.-+. -+.|..|+.++
T Consensus 205 ~~~~~~~i~~~~~~~~iPv~~~~~~~v~~G~----l~~~~~~~~~~ 246 (302)
T 3lkv_A 205 VASAIEGMIVAANQAKTPVFGAATSYVERGA----IASLGFDYYQI 246 (302)
T ss_dssp HHHTHHHHHHHHHHTTCCEEESSHHHHHTTC----SEEEECCHHHH
T ss_pred hhhHHHHHHHHHhhcCCceeecccccccCCc----eEEEecCHHHH
Confidence 11 11 133456777776666554322 24455565554
No 118
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=21.39 E-value=1.2e+02 Score=28.65 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=45.1
Q ss_pred HhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHhcCCC--CCCEEEEecCCCc
Q 014409 205 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFINVSCAQT 271 (425)
Q Consensus 205 a~~A~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkln~aKLaNF~--eID~fV~vaCPr~ 271 (425)
|.+++.=.|.+.+.+ ++.++.+.+.++..+.+.-+.+.|.+|++.++.+. ++|.+.+-+=...
T Consensus 209 A~~aGaD~I~LDn~~----~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~IsvGslt~s 273 (285)
T 1o4u_A 209 AVEAGADIVMLDNLS----PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQ 273 (285)
T ss_dssp HHHTTCSEEEEESCC----HHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTSS
T ss_pred HHHcCCCEEEECCCC----HHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEEeHHHcC
Confidence 444555557788754 45666666666665667889999999999999886 4899997764443
No 119
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=21.20 E-value=1e+02 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=30.2
Q ss_pred HHHHcCCcEE-EEEcCCCCHHHhcCCCCCCEEEEecCCCc----cccc--ccCCCCcccCH
Q 014409 233 LITKAGKKAY-TLVMGKPNPAKLANFPECDVFINVSCAQT----ALLD--SKEFLAPVITP 286 (425)
Q Consensus 233 li~~~GKk~Y-~~~vgkln~aKLaNF~eID~fV~vaCPr~----si~d--~~ef~kPViTP 286 (425)
||.+++-.+= ++-|.+||++ |++.|+.++++--.. +..| +-=|--|||.-
T Consensus 98 LLAEA~VPYd~v~EMdeIN~d----f~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v 154 (203)
T 2fsv_C 98 LLAEANVPYDEVFELEEINSS----FQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDV 154 (203)
T ss_dssp HHHHTTCCGGGEEEHHHHGGG----STTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCG
T ss_pred EEEEecCCHHHHhhHHHHhhh----hhhcCEEEEeccccccCchhhcCCCCCcCCCeeecc
Confidence 3444443332 6778888875 999999999886533 1222 12266777644
No 120
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=21.13 E-value=61 Score=27.38 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=36.0
Q ss_pred EEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEE-cCCCCHHHhcCC-CCCCEEEEecCCC
Q 014409 211 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV-MGKPNPAKLANF-PECDVFINVSCAQ 270 (425)
Q Consensus 211 iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~-vgkln~aKLaNF-~eID~fV~vaCPr 270 (425)
-=+|+|. +.....+.+++++++.| .+.. .|.++.+.+..+ ...|++|+.+-.+
T Consensus 72 ~l~i~G~----~~~~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e 126 (200)
T 2bfw_A 72 RFIIIGK----GDPELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYFE 126 (200)
T ss_dssp EEEEECC----BCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSCC
T ss_pred EEEEECC----CChHHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCCC
Confidence 3456654 33345577888888887 4555 999998777654 5789999866543
No 121
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=20.86 E-value=84 Score=27.64 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCcEE-EEEcCCCCHHHhcCCCCCCEEEEecCCCc----cccc--ccCCCCcccCH
Q 014409 229 QMKELITKAGKKAY-TLVMGKPNPAKLANFPECDVFINVSCAQT----ALLD--SKEFLAPVITP 286 (425)
Q Consensus 229 ~Lk~li~~~GKk~Y-~~~vgkln~aKLaNF~eID~fV~vaCPr~----si~d--~~ef~kPViTP 286 (425)
++.-||.+++-.+= ++-|.+||++ |++.|+.++++--.. +..| +-=|--|||.-
T Consensus 71 hmNVLLAEA~VPYd~v~EMdeIN~d----f~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v 131 (180)
T 1pno_A 71 HMNVLLAEANVPYDEVFELEEINSS----FQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDV 131 (180)
T ss_dssp HHHHHHHHTTCCGGGEEEHHHHGGG----GGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCG
T ss_pred cceEEEEeeCCCHHHHhhHHHHhhh----hhhcCEEEEeccccccCchhccCCCCCcCCCeeech
Confidence 33444555554443 6778888875 999999988876533 1222 12266677644
No 122
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=20.84 E-value=2e+02 Score=24.45 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=31.6
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP 249 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkl 249 (425)
.++-||.++ . .+...+++.+.+.+++.|-..-++-+.+.
T Consensus 5 mkilii~~S-~-g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-Y-GSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-S-SHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC-c-cHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 367888999 4 46789999999999999988878877764
No 123
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=20.81 E-value=97 Score=26.75 Aligned_cols=60 Identities=7% Similarity=0.073 Sum_probs=40.4
Q ss_pred eEEEEEcCCcccCcHHHHHHHHHHHHHcCC--cEEEEEc-CC----CCHHHhcCCCCCCEEEEecCC
Q 014409 210 IIGVLVGTLGVAGYLHMIHQMKELITKAGK--KAYTLVM-GK----PNPAKLANFPECDVFINVSCA 269 (425)
Q Consensus 210 ~iGIlvgTl~~q~~~~~i~~Lk~li~~~GK--k~Y~~~v-gk----ln~aKLaNF~eID~fV~vaCP 269 (425)
+||||++.-...=.-.+++.-++.|+++|- ...++.| |- +-..||+.-..+|++|-++|-
T Consensus 15 ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 81 (156)
T 1c2y_A 15 RFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAV 81 (156)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 599999875433333666777778888885 3344433 31 113677777789999999997
No 124
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=20.62 E-value=92 Score=27.49 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCcE-EEEEcCCCCHHHhcCCCCCCEEEEecCCCc----cccc--ccCCCCcccCH
Q 014409 229 QMKELITKAGKKA-YTLVMGKPNPAKLANFPECDVFINVSCAQT----ALLD--SKEFLAPVITP 286 (425)
Q Consensus 229 ~Lk~li~~~GKk~-Y~~~vgkln~aKLaNF~eID~fV~vaCPr~----si~d--~~ef~kPViTP 286 (425)
++.-||.+++-.+ -++-|.++|++ |++.|+.++++---. +..| +-=|--|||.-
T Consensus 70 hMNVLLAEA~VPYd~v~EMdeIN~d----f~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v 130 (184)
T 1d4o_A 70 QLNVLLAEAGVPYDIVLEMDEINHD----FPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEV 130 (184)
T ss_dssp HHHHHHHHHTCCGGGEEEHHHHGGG----GGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCG
T ss_pred cceEEEEEecCCHHHHHhHHHHhhh----hhhcCEEEEecCCccCCCccccCCCCCccCCeeeeh
Confidence 3334445555444 37788888875 999999988876432 1222 22256677644
No 125
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=20.38 E-value=1.6e+02 Score=27.87 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=24.1
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP 249 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GKk~Y~~~vgkl 249 (425)
++++||++..++.+ ...+++.+.++++|....+..-...
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~t~~~ 68 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRVTWEK 68 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEECCST
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEEecCc
Confidence 45677777776665 4556666777777766555444333
No 126
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.02 E-value=54 Score=30.07 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=41.1
Q ss_pred CeEEEEEcCCcccCcHHHHHHHHHHHHHcCC---cEEEE-EcCCCCHHH-------hcCCCCCCEEEEecCC
Q 014409 209 NIIGVLVGTLGVAGYLHMIHQMKELITKAGK---KAYTL-VMGKPNPAK-------LANFPECDVFINVSCA 269 (425)
Q Consensus 209 ~~iGIlvgTl~~q~~~~~i~~Lk~li~~~GK---k~Y~~-~vgkln~aK-------LaNF~eID~fV~vaCP 269 (425)
++|||+ -.+.-..+.++++-+++.++++|. +..++ .-.+=++++ |.+- .+|..|+++.+
T Consensus 3 ~~Igvi-~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~~~ 72 (295)
T 3lft_A 3 AKIGVL-QFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVGIATP 72 (295)
T ss_dssp EEEEEE-ECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEEESHH
T ss_pred eEEEEE-EccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEECCcH
Confidence 579988 455556678999999999999998 65443 334445544 3332 68998887654
Done!