Citrus Sinensis ID: 014410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPRTIPSSHPSSDANKKVTLNGELASSRNEGVTLAQQPEPQIVPESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTSTANHVNHQDGHLSTRSTTTANHSANHADHAEEEEEEEAEQLSRRMRKGKGCARPEDEEHLPERHPLGILGSSIPAARLNRPLIRPVQAEPPHETNAHPQPVTIPPPPAKHVEREKFFQEKKVDASAAAGHMRGLSLHSRNASSSRSGSTDFSD
cHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccc
cHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccc
MATELVNSatsekladvdwtknIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATqtslggasgkfpqYYTAYYELVSagvqfpqrprtipsshpssdankkvtlngelassrnegvtlaqqpepqivpessiIQKASNALEVLKDVLDAvgtqnpegakdeftLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLlserststanhvnhqdghlstrstttanhsanhadhaeeeEEEEAEQLSRRMRkgkgcarpedeehlperhplgilgssipaarlnrplirpvqaepphetnahpqpvtippppakhverekffqekkvdasaaaGHMRGLSlhsrnasssrsgstdfsd
matelvnsatsekladvdwtKNIEICElvardqrhaKDVIKAIkkrlgskntnVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDatqtslggasgKFPQYYTAYYELVSAGVQFPQRPRTipsshpssdankkVTLNGELASSRNEGVTLAQQPEPQIVPESSIIQKASNALEVLKDVLDAVGTQNpegakdeftlDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTstanhvnhqdghlstrstTTANHSanhadhaeeeeEEEAEQLSRRMRKGKGCarpedeehlperhplgilgSSIPAARLNRPLIRPVQAEPPHETNAHPQPVTIPPPPAKHVEREKFFQEKKVDASAAAGhmrglslhsrnasssrsgstdfsd
MATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGilpilvkivkkkSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPRTIPSSHPSSDANKKVTLNGELASSRNEGVTLAQQPEPQIVPESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTSTANHVNHQDGHLSTRSTTTANHSANHADHaeeeeeeeaeQLSRRMRKGKGCARPEDEEHLPERHPLGILGSSIPAARLNRPLIRPVQAEPPHETNAHPQPVTIPPPPAKHVEREKFFQEKKVDASAAAGHMRglslhsrnasssrsgstdfsD
*************LADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQF********************************************************ALEVLKDVLDAVG********DEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVL****************************************************************************************************************************************************************
*ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVK*****PVRERIFLLLDATQTSLGGASGKFPQYYTAYYEL***********************************************************************************************************TSRDEKVVSQAIDLNEQLQNVLAR********************************************************************************************************************************************************************
************KLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQR*************NKKVTLNGELASSRNEGVTLAQQPEPQIVPESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTS**********************************************************HLPERHPLGILGSSIPAARLNRPLIRPVQAEPPHETNAHPQPVTIPPPPAKHVEREKFFQEKKVDASAAAGHMRGLS******************
************KLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRP***************************************IVPESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSE*******************************************************************************************************PVTIPPPP*******KFFQEK*********************************
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MATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPRTIPSSHPSSDANKKVTLNGELASSRNEGVTLAQQPEPQIVPESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTSTANHVNHQDGHLSTRSTTTANHSxxxxxxxxxxxxxxxxxxxxxMRKGKGCARPEDEEHLPERHPLGILGSSIPAARLNRPLIRPVQAEPPHETNAHPQPVTIPPPPAKHVEREKFFQEKKVDASAAAGHMRGLSLHSRNASSSRSGSTDFSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query425 2.2.26 [Sep-21-2011]
Q5SRX1507 TOM1-like protein 2 OS=Mu yes no 0.656 0.550 0.253 2e-16
Q6ZVM7507 TOM1-like protein 2 OS=Ho yes no 0.656 0.550 0.246 4e-15
Q68FJ8507 TOM1-like protein 2 OS=Xe N/A no 0.644 0.540 0.241 1e-14
O88746492 Target of Myb protein 1 O no no 0.618 0.534 0.236 2e-14
O75674476 TOM1-like protein 1 OS=Ho no no 0.649 0.579 0.266 5e-14
O60784492 Target of Myb protein 1 O no no 0.597 0.516 0.243 6e-14
F1LM81475 TOM1-like protein 1 OS=Ra no no 0.651 0.583 0.255 2e-13
Q923U0474 TOM1-like protein 1 OS=Mu no no 0.651 0.584 0.255 2e-13
Q54GH3 663 Target of Myb protein 1 O yes no 0.623 0.399 0.224 3e-13
Q99LI8 775 Hepatocyte growth factor- no no 0.244 0.134 0.317 1e-12
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 Back     alignment and function desciption
 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 144/312 (46%), Gaps = 33/312 (10%)

Query: 4   ELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRL-GSKNTNVQLYAVMLL 62
           + +  AT   L   DWT N+EIC+++   +   KD I+A+KKRL G++N    + A+ +L
Sbjct: 15  QCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVL 74

Query: 63  EMLMNNIGDHIHKLVIDTGIL-PILVKIVKKKSDLP--VRERIFLLLDATQTSLGGASGK 119
           E  + N G   H LV +   +  +LVKI+  K++ P  V++++  L+ A   +   +S  
Sbjct: 75  ETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAF-RSSPD 133

Query: 120 FPQYYTAYYELVSAGVQFPQRP-----------RTIPSSHPSS----DANKKVTLNGELA 164
                  Y EL   G++FP              R++P   P++       +  T  G  +
Sbjct: 134 LTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYS 193

Query: 165 SSRNEGVTLAQQPEPQ----IVPESSIIQKASNALEVLKD---VLDAVGTQNPEGAKDEF 217
           S      +  Q P       I   S  I +  + L++++    V+  + T+   G +D  
Sbjct: 194 SPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSS 253

Query: 218 TLDLVEQ----CSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTST 273
            L+L+++    C   + R++ L+    +E+V  + + +N+ L NV  R++    ER  S 
Sbjct: 254 DLELLQELNRTCRAMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRYERF--ERYRSG 311

Query: 274 ANHVNHQDGHLS 285
            +  N  +G LS
Sbjct: 312 RSVQNASNGVLS 323
Probable role in protein transport. May regulate growth factor-induced mitogenic signaling.
Mus musculus (taxid: 10090)
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 Back     alignment and function description
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 Back     alignment and function description
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1 Back     alignment and function description
>sp|O75674|TM1L1_HUMAN TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1 SV=2 Back     alignment and function description
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 Back     alignment and function description
>sp|F1LM81|TM1L1_RAT TOM1-like protein 1 OS=Rattus norvegicus GN=Tom1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q923U0|TM1L1_MOUSE TOM1-like protein 1 OS=Mus musculus GN=Tom1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q54GH3|TOM1_DICDI Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1 Back     alignment and function description
>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
255544385415 Hepatocyte growth factor-regulated tyros 0.969 0.992 0.722 1e-166
224145705415 predicted protein [Populus trichocarpa] 0.976 1.0 0.738 1e-163
224122768418 predicted protein [Populus trichocarpa] 0.971 0.988 0.725 1e-162
296082660400 unnamed protein product [Vitis vinifera] 0.908 0.965 0.701 1e-153
449449813416 PREDICTED: target of Myb protein 1-like 0.971 0.992 0.665 1e-149
312283255448 unnamed protein product [Thellungiella h 0.995 0.944 0.66 1e-139
356516423402 PREDICTED: target of Myb protein 1-like 0.891 0.942 0.668 1e-137
357520245436 Vacuolar protein-sorting machinery prote 0.910 0.887 0.618 1e-135
356527558398 PREDICTED: TOM1-like protein 2-like [Gly 0.912 0.974 0.656 1e-135
297793949447 VHS domain-containing protein [Arabidops 0.990 0.941 0.665 1e-135
>gi|255544385|ref|XP_002513254.1| Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis] gi|223547628|gb|EEF49122.1| Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 307/425 (72%), Positives = 355/425 (83%), Gaps = 13/425 (3%)

Query: 2   ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVML 61
           A ELVNSATS+KL +VDW KNIEICELVARDQR A+DV+KAIKKRLGSKN+  QLYAVML
Sbjct: 3   AAELVNSATSDKLPEVDWAKNIEICELVARDQRQARDVVKAIKKRLGSKNSTAQLYAVML 62

Query: 62  LEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFP 121
           LEMLMNN G+ +HK VIDTG+LPILVKIVKKK+DLP+RERIFLLLDATQTSLG ASGKFP
Sbjct: 63  LEMLMNNNGEPVHKEVIDTGVLPILVKIVKKKTDLPIRERIFLLLDATQTSLGSASGKFP 122

Query: 122 QYYTAYYELVSAGVQFPQRPRTIPSSHPSSDANKKVTLNGELASSRNEGVTLAQQPEPQI 181
           QYY+AYY+LVSAGVQFPQRP    +++ +S A  + TLNGELA+SR E V  AQ+ EP +
Sbjct: 123 QYYSAYYDLVSAGVQFPQRPPETKTNNSTSQAKTRSTLNGELAASRQEVV--AQKAEPPV 180

Query: 182 VPESSIIQKASNALEVLKDVLDAVGTQNPE-GAKDEFTLDLVEQCSFQKQRVMHLVMTSR 240
           VPESSIIQKA+NALEVLK+VLDAV +QNP+ GAKDEFTLDLVEQCSFQKQ+VMHLVMTSR
Sbjct: 181 VPESSIIQKANNALEVLKEVLDAVDSQNPQGGAKDEFTLDLVEQCSFQKQKVMHLVMTSR 240

Query: 241 DEKVVSQAIDLNEQLQNVLARHDVLLSERSTSTANHVNHQDGHLSTRSTTTANHSANHAD 300
           DEKVVS+AI+LNEQLQ +LA+HD L+S RS  +        GH     TT+A   A+H +
Sbjct: 241 DEKVVSRAIELNEQLQKLLAQHDALVSGRSMVSDRSAF--SGH-----TTSA---ADHFN 290

Query: 301 HAEEEEEEEAEQLSRRMRKGKGCARPEDEEHLPERHPLGILGSSIPAARLNRPLIRPVQA 360
           H EE+EEEEAEQL RR+RKGK CA+PEDE +L ER P+G+LGSSI   RLNRPLIRP+ +
Sbjct: 291 HYEEDEEEEAEQLFRRLRKGKACAKPEDEGNLEERIPMGMLGSSIFGDRLNRPLIRPLHS 350

Query: 361 EPPHETNAHPQPVTIPPPPAKHVEREKFFQEKKVDASAAAGHMRGLSLHSRNASSSRSGS 420
           +  HE +A+  PV IPPPPAKH+ERE+FFQEKKVD SA +GHMRGLSLHSRN SSS SGS
Sbjct: 351 DQSHEPSANTSPVAIPPPPAKHIERERFFQEKKVDGSAVSGHMRGLSLHSRNGSSSHSGS 410

Query: 421 TDFSD 425
            DFSD
Sbjct: 411 LDFSD 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224145705|ref|XP_002325737.1| predicted protein [Populus trichocarpa] gi|222862612|gb|EEF00119.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122768|ref|XP_002330472.1| predicted protein [Populus trichocarpa] gi|222871884|gb|EEF09015.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296082660|emb|CBI21665.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449813|ref|XP_004142659.1| PREDICTED: target of Myb protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|312283255|dbj|BAJ34493.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|356516423|ref|XP_003526894.1| PREDICTED: target of Myb protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357520245|ref|XP_003630411.1| Vacuolar protein-sorting machinery protein [Medicago truncatula] gi|357520253|ref|XP_003630415.1| Class E vacuolar protein-sorting machinery protein HSE1 [Medicago truncatula] gi|355524433|gb|AET04887.1| Vacuolar protein-sorting machinery protein [Medicago truncatula] gi|355524437|gb|AET04891.1| Class E vacuolar protein-sorting machinery protein HSE1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356527558|ref|XP_003532376.1| PREDICTED: TOM1-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297793949|ref|XP_002864859.1| VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310694|gb|EFH41118.1| VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
TAIR|locus:2160654447 AT5G63640 [Arabidopsis thalian 0.635 0.604 0.741 1.2e-97
TAIR|locus:2025297446 AT1G76970 "AT1G76970" [Arabido 0.870 0.829 0.320 2.6e-47
TAIR|locus:2077808 607 AT3G08790 [Arabidopsis thalian 0.621 0.434 0.367 4.2e-47
TAIR|locus:2027037506 AT1G21380 [Arabidopsis thalian 0.609 0.511 0.391 2.7e-45
TAIR|locus:2057140 671 AT2G38410 [Arabidopsis thalian 0.348 0.220 0.441 5.9e-43
TAIR|locus:2180982542 AT5G01760 [Arabidopsis thalian 0.616 0.483 0.329 1.3e-36
UNIPROTKB|F1NWT1477 TOM1L1 "Uncharacterized protei 0.590 0.526 0.282 1.2e-15
UNIPROTKB|A5PK10390 TOM1L2 "Uncharacterized protei 0.315 0.343 0.294 3.1e-15
UNIPROTKB|E1BEE0500 TOM1L2 "Uncharacterized protei 0.315 0.268 0.302 3.7e-15
TAIR|locus:2148121407 AT5G16880 "AT5G16880" [Arabido 0.630 0.658 0.225 3.8e-15
TAIR|locus:2160654 AT5G63640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
 Identities = 201/271 (74%), Positives = 221/271 (81%)

Query:     1 MATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVM 60
             MA ELV+SATSEKLADVDW KNIEICEL ARD+R AKDVIKAIKKRLGSKN N QLYAV 
Sbjct:     1 MAAELVSSATSEKLADVDWAKNIEICELAARDERQAKDVIKAIKKRLGSKNPNTQLYAVQ 60

Query:    61 LLEMLMNNIGDHIHKLVIDTGXXXXXXXXXXXXSDLPVRERIFLLLDATQTSLGGASGKF 120
             LLEMLMNNIG++IHK VIDTG            SDLPVRERIFLLLDATQTSLGGASGKF
Sbjct:    61 LLEMLMNNIGENIHKQVIDTGVLPTLVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKF 120

Query:   121 PQYYTAYYELVSAGVQFPQRPRTIPSSHPSSDANKKVTLNGELASSRNEGVTLAQQPEPQ 180
             PQYYTAYYELV+AGV+F QRP   P    ++ A  + TLN +LAS+RNEG    QQ E Q
Sbjct:   121 PQYYTAYYELVNAGVKFTQRPNATPVV-VTAQAVPRNTLNEQLASARNEGPATTQQRESQ 179

Query:   181 IVPESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSR 240
              V  SSI+QKAS ALE+LK+VLDAV +QNPEGAKDEFTLDLVEQCSFQK+RVMHLVMTSR
Sbjct:   180 SVSPSSILQKASTALEILKEVLDAVDSQNPEGAKDEFTLDLVEQCSFQKERVMHLVMTSR 239

Query:   241 DEKVVSQAIDLNEQLQNVLARHDVLLSERST 271
             DEK VS+AI+LNEQLQ +L RH+ LLS R T
Sbjct:   240 DEKAVSKAIELNEQLQRILNRHEDLLSGRIT 270
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005795 "Golgi stack" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS
GO:0008565 "protein transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2025297 AT1G76970 "AT1G76970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077808 AT3G08790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027037 AT1G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057140 AT2G38410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180982 AT5G01760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWT1 TOM1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5PK10 TOM1L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEE0 TOM1L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2148121 AT5G16880 "AT5G16880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
cd03561133 cd03561, VHS, VHS domain family; The VHS domain is 2e-39
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 7e-26
cd03569142 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs an 1e-20
cd03568144 cd03568, VHS_STAM, VHS domain family, STAM subfami 2e-20
cd03565141 cd03565, VHS_Tom1, VHS domain family, Tom1 subfami 7e-19
pfam0312799 pfam03127, GAT, GAT domain 5e-17
pfam00790136 pfam00790, VHS, VHS domain 3e-15
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 1e-08
cd03567139 cd03567, VHS_GGA, VHS domain family, GGA subfamily 1e-04
>gnl|CDD|239620 cd03561, VHS, VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information 
 Score =  137 bits (347), Expect = 2e-39
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 2   ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVML 61
            T L+  ATS  L + DW  N+E+C+L+       K+  +AI+K++   N +VQL A+ L
Sbjct: 1   VTSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTL 60

Query: 62  LEMLMNNIGDHIHKLVIDTGILPILVKIVKK--KSDLPVRERIFLLLDATQTSLGGASGK 119
           LE+L+ N G   H  V D   L  LVKI K   K D  VRE+   L+ A   S GG S  
Sbjct: 61  LELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSED 120

Query: 120 FPQYYTAYYEL 130
            P    AY  L
Sbjct: 121 LPGIEDAYKLL 131

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general membrane targeting/cargo recognition role in vesicular trafficking. Length = 133
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>gnl|CDD|239626 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>gnl|CDD|239625 cd03568, VHS_STAM, VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>gnl|CDD|239623 cd03565, VHS_Tom1, VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>gnl|CDD|190532 pfam03127, GAT, GAT domain Back     alignment and domain information
>gnl|CDD|216121 pfam00790, VHS, VHS domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|239624 cd03567, VHS_GGA, VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 425
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 100.0
KOG1086 594 consensus Cytosolic sorting protein/ADP-ribosylati 100.0
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 100.0
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 100.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 100.0
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 100.0
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 100.0
cd03561133 VHS VHS domain family; The VHS domain is present i 100.0
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 100.0
KOG2199462 consensus Signal transducing adaptor protein STAM/ 100.0
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.92
KOG1818 634 consensus Membrane trafficking and cell signaling 99.85
PF03127100 GAT: GAT domain; InterPro: IPR004152 The GAT domai 99.81
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.03
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 98.0
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 97.76
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 97.67
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 97.64
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 97.24
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.04
smart00582121 RPR domain present in proteins, which are involved 95.83
KOG0251491 consensus Clathrin assembly protein AP180 and rela 94.16
KOG2374 661 consensus Uncharacterized conserved protein [Funct 92.85
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 91.25
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 89.96
KOG2057499 consensus Predicted equilibrative nucleoside trans 89.88
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 88.12
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 87.12
PF1221096 Hrs_helical: Hepatocyte growth factor-regulated ty 85.0
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-65  Score=528.62  Aligned_cols=416  Identities=28%  Similarity=0.387  Sum_probs=300.9

Q ss_pred             ChhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhccc
Q 014410            1 MATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDT   80 (425)
Q Consensus         1 ~a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~   80 (425)
                      |+..+|+|||++.+.++||++||+|||+||.+.++++||+|+|+|||+++++++|++||+|||+||||||+.||.+|+++
T Consensus         1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k   80 (470)
T KOG1087|consen    1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK   80 (470)
T ss_pred             ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCCCCCCCC------cc
Q 014410           81 GILPILVKIVKKK-SDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPRTIPSSHPSS------DA  153 (425)
Q Consensus        81 ~FL~~L~klv~~k-~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~~~~~~~~~~~t~------~~  153 (425)
                      +||++|+++++++ .+.+||+|||.||++|+.+|++..++++.|+.+|++|+++||+||.++.+...+...+      .+
T Consensus        81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~  160 (470)
T KOG1087|consen   81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLRPAPE  160 (470)
T ss_pred             HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCCCCCC
Confidence            9999999999998 8899999999999999999999888999999999999999999999988864321111      10


Q ss_pred             c--ccccccccccC-CCCCCCccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHH
Q 014410          154 N--KKVTLNGELAS-SRNEGVTLAQQPEPQIVPESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQ  230 (425)
Q Consensus       154 ~--~~~~~~~~~~S-~~~~~~~~A~~~e~q~~~~~~ele~~~~~~~LL~EML~~~~p~~~~~~d~Eli~EL~~~Cr~~q~  230 (425)
                      .  .+..+....++ ....... ......+.....++|++++++++||+|||.+++|++++..++|++.+|+++||.+|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~  239 (470)
T KOG1087|consen  161 PQEQSGPPNEANASMKSMAGYP-TEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQR  239 (470)
T ss_pred             chhhcCCccccccccccccccc-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence            0  00000000000 0000000 000011112246799999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCcHHHHHHHHHhhHHHHHHHHHHHhhhhcCcc-------ccccccccCCC----CCcccCccCCCCCC---
Q 014410          231 RVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSERST-------STANHVNHQDG----HLSTRSTTTANHSA---  296 (425)
Q Consensus       231 rI~~lI~~v~dEelL~~LL~~NDeL~~aL~rYe~l~~g~~~-------~~~~~~~~~~g----~~~~~~~~~~~~~~---  296 (425)
                      |||+||.++.||++|+++|++||+|++||.+||++.+|...       .+...+....+    ...+.....+..+.   
T Consensus       240 rv~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g~s~~~~~~~e~~~~p~~~~~~~~~~~~s~~~~~~~~~~~ss~  319 (470)
T KOG1087|consen  240 RVMHLIEETSDEELLCELLKLNDELQRVLERYERIASGSSVATTSKSETASDPVDQSSSLLDKDDSSIDLNDSLASRSSS  319 (470)
T ss_pred             HHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCCccccCccccccCcCcccccccccccccc
Confidence            99999999999999999999999999999999999999211       11111111110    00000000011110   


Q ss_pred             CCCCCcchhhhHHHHHHHHHhhcccCCCCCCCcCCCCCCCCCCcccCCcccccccCCcccCCCCCCCCCCCCCCCCcccC
Q 014410          297 NHADHAEEEEEEEAEQLSRRMRKGKGCARPEDEEHLPERHPLGILGSSIPAARLNRPLIRPVQAEPPHETNAHPQPVTIP  376 (425)
Q Consensus       297 ~~~~~~~~~~~d~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (425)
                      ..+.-.++++.+.+ |++.+..+.. .........+...+|.+..++++....+..+..++.+..--..+.. +....+|
T Consensus       320 ~~~~~~~~~~~~~~-~l~~d~~~l~-~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~-~~~~~~~  396 (470)
T KOG1087|consen  320 TGISATPSSEQPSG-QLLGDLDKLS-DQTLLGLAPPPPNSPTASESSSISLLSLSSDNQSELSNSATNSPGS-SPQESFP  396 (470)
T ss_pred             CCCcCCCccccccc-chhhhhcccc-chhccccCCCCCCCCCCCcccccccccccccccccCCcccccCCCc-cccccCC
Confidence            01111221222222 7777776651 1111222233444556777777777777666666543322221111 2456788


Q ss_pred             CCCCchhHHHHHHHHhcCCcc-ccccccccccccccCCCCCCCCCCCC
Q 014410          377 PPPAKHVEREKFFQEKKVDAS-AAAGHMRGLSLHSRNASSSRSGSTDF  423 (425)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (425)
                      |.|..  ++..||-.+..... ...+++.|.+.|+.-.+ .++||-.+
T Consensus       397 P~~~~--~~s~~~~p~~~~~~~~~p~~p~~~~~~~~~~~-~~~~s~p~  441 (470)
T KOG1087|consen  397 PLPQI--QKSSTSPPQSDSLMIEQPLTPASKSSPRSSSS-ASTGSSPQ  441 (470)
T ss_pred             CCccc--ccccccCCCcccccccCCCCcccCCccccccc-ccCCCCcc
Confidence            88888  88888888876553 67788999888888877 66666554

>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3 Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2374 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 1e-09
1elk_A157 Vhs Domain Of Tom1 Protein From H. Sapiens Length = 3e-07
1x5b_A163 The Solution Structure Of The Vhs Domain Of Human S 5e-05
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 7e-04
3ldz_A140 Crystal Structure Of Human Stam1 Vhs Domain In Comp 7e-04
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%)
Query: 5   LVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEM 64
           L++ ATS+ L + DW   ++IC+L+ +    AK  + +IKK++  KN +V LYA+ ++E 
Sbjct: 12  LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMES 71
Query: 65  LMNNIGDHIHKLVIDTGXXXXXXXXXXXXSDLPVRERIFLLLDA 108
           ++ N G  +H  V +               ++ VR +I  L+ A
Sbjct: 72  VVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA 115
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens Length = 157 Back     alignment and structure
>pdb|1X5B|A Chain A, The Solution Structure Of The Vhs Domain Of Human Signal Transducing Adaptor Molecule 2 Length = 163 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|3LDZ|A Chain A, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 4e-38
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 2e-36
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 1e-35
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 2e-34
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 3e-33
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 5e-33
3g2s_A149 C-terminal fragment of sortilin-related receptor; 9e-32
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 7e-31
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 3e-27
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 1e-18
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 4e-07
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 6e-07
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 6e-07
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 7e-05
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
 Score =  134 bits (339), Expect = 4e-38
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 3/149 (2%)

Query: 3   TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLL 62
            + V  AT+E     DW+  ++IC+ V      AKD +KAI KR+  K  +V L A+ LL
Sbjct: 17  EQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLL 76

Query: 63  EMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQ 122
              + N G   H  V        +  ++K K+   V E++  L+            +F  
Sbjct: 77  GACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP-QFSL 135

Query: 123 YYTAYYELVSAGVQFPQRPRTIPSSHPSS 151
                  +   G+ FP       +S PSS
Sbjct: 136 ISATIKSMKEEGITFPPAGS--QTSGPSS 162
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158 Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Length = 144 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 100.0
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 100.0
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 100.0
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 100.0
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 100.0
3g2s_A149 C-terminal fragment of sortilin-related receptor; 100.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 100.0
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 100.0
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 100.0
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 99.85
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 99.85
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 99.83
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 99.83
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 99.78
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.01
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 97.9
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 97.63
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 97.61
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 97.37
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 97.24
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 97.23
2pjw_V91 Vacuolar protein sorting-associated protein 27; GA 96.52
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 96.35
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 96.19
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 95.34
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 93.74
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 93.49
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 93.48
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 93.38
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 93.32
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 89.67
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 87.51
3f1i_H98 Hepatocyte growth factor-regulated tyrosine kinas 86.84
3clj_A157 Protein NRD1; CTD-interacting domain, nucleus, pho 86.21
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 84.19
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 83.59
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 82.95
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
Probab=100.00  E-value=1.1e-42  Score=316.71  Aligned_cols=142  Identities=25%  Similarity=0.339  Sum_probs=136.5

Q ss_pred             hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014410            3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI   82 (425)
Q Consensus         3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F   82 (425)
                      +.+|+|||++.+.++||++|++|||+||.+++++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++|
T Consensus        17 ~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~F   96 (163)
T 1x5b_A           17 EQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDF   96 (163)
T ss_dssp             HHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHH
T ss_pred             HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCC
Q 014410           83 LPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPRTIP  145 (425)
Q Consensus        83 L~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~~~~~~~  145 (425)
                      |++|++++++++++.|++||++||+.|+.+|++. ++|..|.++|++||++||+||..+..+.
T Consensus        97 l~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-~~l~~i~~~Y~~Lk~~G~~FP~~~~~~~  158 (163)
T 1x5b_A           97 ATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD-PQFSLISATIKSMKEEGITFPPAGSQTS  158 (163)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC-STTHHHHHHHHHHHTTTCCCCCCSSCCC
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence            9999999998899999999999999999999765 5899999999999999999999987654
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 425
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 2e-37
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 3e-35
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 3e-34
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 4e-34
d1ujka_145 a.118.9.2 (A:) ADP-ribosylation factor binding pro 9e-31
d1wrda193 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 7e-16
d1wr6a190 a.7.8.1 (A:211-300) ADP-ribosylation factor bindin 1e-15
d1o3xa_112 a.7.8.1 (A:) ADP-ribosylation factor binding prote 1e-10
d1szaa_144 a.118.9.4 (A:) PCF11 protein {Baker's yeast (Sacch 8e-08
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 1e-06
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 4e-04
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  131 bits (330), Expect = 2e-37
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 3   TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLL 62
            + + +ATS    + DW   + IC+ + +     K+   AIKK++ S N +   Y++++L
Sbjct: 7   CKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVL 66

Query: 63  EMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQ 122
           E ++ N G  +H+ V       +    ++      VR+++  L+     +    S K+  
Sbjct: 67  ESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS-SDKYQA 125

Query: 123 YYTAYYELVSAGVQFPQR 140
                  L + G  FP+ 
Sbjct: 126 IKDTMTILKAKGHTFPEL 143
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 144 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 100.0
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 100.0
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 100.0
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 100.0
d1wrda193 Target of Myb protein 1, TOM1 {Human (Homo sapiens 99.86
d1wr6a190 ADP-ribosylation factor binding protein Gga3 {Huma 99.82
d1o3xa_112 ADP-ribosylation factor binding protein Gga1 {Huma 99.77
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 98.87
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 97.73
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 97.61
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.43
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.8e-41  Score=300.94  Aligned_cols=138  Identities=22%  Similarity=0.381  Sum_probs=133.6

Q ss_pred             hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014410            3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI   82 (425)
Q Consensus         3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F   82 (425)
                      +.+|+|||++.+.++||++|++|||+||.++.+|++|+|+|+|||+|+||++|++||+|||+||+|||..||.+|++++|
T Consensus         7 ~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~f   86 (145)
T d1dvpa1           7 CKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKEN   86 (145)
T ss_dssp             HHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHH
T ss_pred             HHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCCCC
Q 014410           83 LPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRP  141 (425)
Q Consensus        83 L~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~~~  141 (425)
                      +++|++++++.++..|++||+++|+.|+..|++ +++|+.|.++|+.||++||+||+.+
T Consensus        87 l~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~-~~~~~~i~~~y~~Lk~~G~~FP~l~  144 (145)
T d1dvpa1          87 CEMFSSFLESTPHENVRQKMLELVQTWAYAFRS-SDKYQAIKDTMTILKAKGHTFPELR  144 (145)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT-CSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-CccchHHHHHHHHHHHCCCCCcCCC
Confidence            999999999888999999999999999999976 4699999999999999999999875
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure