BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014411
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
pdb|1YX2|B Chain B, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
Length = 365
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 130/299 (43%), Gaps = 12/299 (4%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
D+SH G + VSG+D + FL T + L G+ T P T+D + +N
Sbjct: 51 DVSHXGEVEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENR 110
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG 226
+LV++ ++ A V+I + + Q L V GPK+ ++++L D+
Sbjct: 111 YLLVINASNIDKDLAWXKEHA--AGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSA 168
Query: 227 -EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLL----SQGAVPMGS 281
+ + ++G + E+G+ + A +W+ ++ + G +P G
Sbjct: 169 LKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAXHIWKKIIDAGDAYGLIPCGL 228
Query: 282 NAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGC-YKGQETISRLITYDGLKQR 340
A + LR P G+ELT + +EAG+ ++ K + G+ +S +G K++
Sbjct: 229 GARDTLRFEANIPLYGQELTRDITPIEAGIGFAVKHKKESDFFGKSVLSEQ-KENGAKRK 287
Query: 341 LWGICLSAPAEP--GSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV 397
L G+ P G + +GK VGK+T+ T + GL I + + G V V
Sbjct: 288 LVGLEXIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDV 346
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 131/315 (41%), Gaps = 25/315 (7%)
Query: 115 IRVSGDDRIQFLHNQSTANFEILREGQGC--DTVFVTPTARTIDIAHAWIMKNAVILVVS 172
I V G+DR FL Q A+ +IL++ + + F+ P AR + A ++ + L
Sbjct: 48 IFVEGEDRKNFL--QGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPP 105
Query: 173 PLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGT- 231
T L KY+FF K +I D + +VGP++ V+ L + G ++
Sbjct: 106 AGTREEFVNHLKKYLFFRTKAKITDXSDHFREIRLVGPETISVLLSLFDNNFSGSSFRXL 165
Query: 232 --------HRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNA 283
H + + + + I + F S+ + ++G V + ++
Sbjct: 166 KNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFE-----TTQKSLEDFTSNKGGVLLDESS 220
Query: 284 WEKLRIIKGRPAPGKELTNEFNVLEAGLWN-SISLDKGCYKGQETISRLITYDGLKQRLW 342
+ KG P EL + F EAGL + +S +KGCY GQE ++RL L + L
Sbjct: 221 YLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGCYVGQEPVTRLKFQGHLNRSLA 280
Query: 343 GICLSAPAEPGSPIIV------DGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVT 396
G L P V DG + G LT + GLGYIKR + G +
Sbjct: 281 GFRLEGGPFPKXEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKRNFSENGTELL 340
Query: 397 VGDNIVGTVVEVPFL 411
+ D + V +PF+
Sbjct: 341 LPDAQLVRVHSLPFV 355
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOP|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOR|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOS|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
Length = 364
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 38/338 (11%)
Query: 95 EALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART 154
E + A V D+SH G V G + + F+ T +F L +G+ +V
Sbjct: 34 EEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGI 93
Query: 155 IDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSN 213
ID + + + ++VV+ + + D VE+ +I+ T L GPK+
Sbjct: 94 IDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFD-VEVSNISDTTALIAFQGPKAQ 152
Query: 214 QVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS 273
+ +++L L AY + R V G+ V E+GF L++ A VW+ L++
Sbjct: 153 ETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMN 212
Query: 274 QGAVPMGSNAWEKLRIIKGRPA----------------PGKELTNEFNVLEAGLWNSISL 317
LR I GRPA G+++ N E GL + L
Sbjct: 213 L------------LRKIDGRPAGLGARDVCRLEATYLLYGQDMDENTNPFEVGLSWVVKL 260
Query: 318 DKGCYKGQETISRLITYDGLKQRLWGICLSAP--AEPGSPIIVDGKKVGKLTSYTLGRKE 375
+K + G+E + L + ++++L + LS A G ++ +G++VG++TS
Sbjct: 261 NKD-FVGKEAL--LKAKEKVERKLVALELSGKRIARKGYEVLKNGERVGEITSGNFSPTL 317
Query: 376 SDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPF 410
L + + +G V G + VV+ PF
Sbjct: 318 GKSIALALVSKSVKIGDQLGVVFPGGKLVEALVVKKPF 355
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 140/343 (40%), Gaps = 58/343 (16%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM 163
VA D++ R+ VSG ++ L +TA+ L + G T T+ + HA +
Sbjct: 497 VAMYDMTPLKRLEVSGPGALKLLQELTTAD---LAKKPGAVTY-------TLLLDHAGGV 546
Query: 164 KNAVILVVSPLTCSSITEMLNKYV---FF-------------ADKVEIQDITKQTCLFVV 207
++A+ V+ L+ + N + +F D V+++D T TC +
Sbjct: 547 RSAI--TVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQVRDTTGGTCCIGL 604
Query: 208 VGPKSNQVMRDLNLGDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAG 265
GP + ++ ++ D G Y ++ + G+P+T + + E G+ L S
Sbjct: 605 WGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQ 664
Query: 266 SVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGC 321
+W+ L G + G A+ LR+ KG + G ++T E + EAGL ++ + K
Sbjct: 665 RLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKES 724
Query: 322 YKGQETIS-----------RLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYT 370
+ G+ + R +T D + + G P+ + VG +TS
Sbjct: 725 FIGKGALEGRTEEASARRLRCLTIDDGRSIVLG---------KEPVFYKEQAVGYVTSAA 775
Query: 371 LGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPF 410
G + Y+ ++ GD+V + G I TV E P
Sbjct: 776 YGYTVAKPIAYSYLPGTVSV-GDSVDIEYFGRRITATVTEDPL 817
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 191 DKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHYSVNGMPITVGVGN 248
D V+++D T TC + GP + ++ ++ D G Y ++ + G+P+T +
Sbjct: 591 DWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLS 650
Query: 249 VISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEF 304
+ E G+ L S +W+ L G + G A+ LR+ KG + G ++T E
Sbjct: 651 YVGELGWELYTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEH 710
Query: 305 NVLEAGLWNSISLDKGCYKGQETIS-----------RLITYDGLKQRLWGICLSAPAEPG 353
+ EAGL ++ + K + G+ + R +T D + + G
Sbjct: 711 DPFEAGLGFAVKMAKESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLG---------K 761
Query: 354 SPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPF 410
P+ + VG +TS G + Y+ ++ GD+V + G I TV E P
Sbjct: 762 EPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSV-GDSVDIEYFGRRITATVTEDPL 820
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
pdb|1V5V|B Chain B, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
Length = 401
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 138/353 (39%), Gaps = 46/353 (13%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A N V D+SH G I G D ++FL +T + G T+ + D
Sbjct: 42 AVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDET 101
Query: 159 HAWIMKNAVILVVSPLTCSSITEMLNKYVFFADK---------VEIQDITKQTCLFVVVG 209
+ M N L++ S E L + + + +EI+ T +F V G
Sbjct: 102 LVFNMGNNEYLMICD---SDAFEKLYAWFTYLKRTIEQFTKLDLEIELKTYDIAMFAVQG 158
Query: 210 PKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLM---------- 259
PK+ + +DL D+ + R ++G+ + + E GF + +
Sbjct: 159 PKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDE 218
Query: 260 ----SPAAAGSVWETLLSQGA----VPMGSNAWEKLRIIKGRPAPG---KELT------N 302
P A VWE +L +G P G A + LR+ G G KEL +
Sbjct: 219 SKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDID 278
Query: 303 EFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEP--GSPIIVDG 360
E L+A L +I DK + G++ + + G+ ++L + P G + +G
Sbjct: 279 EVTPLQANLEFAIYWDKD-FIGKDALLKQ-KERGVGRKLVHFKMIDKGIPREGYKVYANG 336
Query: 361 KKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPF 410
+ +G++TS TL + G+ ++K + A G + V G V PF
Sbjct: 337 EMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPF 389
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 964
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 27/264 (10%)
Query: 90 FGNDGEALD--------AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQ 141
+ DGE++D A + V +D S G+I + G D +FL+ T + L+ G
Sbjct: 601 YPQDGESMDEAVYRECKAVRDSVGMLDASTLGKIEIRGKDAAEFLNRMYTNGYTKLKVGM 660
Query: 142 GCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYV---FFADKVEIQD 197
G V D + ++ ++ + + + + L +++ + V
Sbjct: 661 GRYGVMCKADGMIFDDGVTLRLAEDRFLMHTTTGGAADVLDWLEEWLQTEWPELDVTCTS 720
Query: 198 ITKQTCLFVVVGPKSNQVMRDLNLG-DLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFS 256
+T+Q VVGP+S V+ L D+ +A+ + + + + G+ IS FS
Sbjct: 721 VTEQLATVAVVGPRSRDVIAKLASSLDVSNDAF---KFMAFQDVTLDSGIEARISRISFS 777
Query: 257 LLMS-----PAAAG-SVWETLLSQGA----VPMGSNAWEKLRIIKGRPAPGKELTNEFNV 306
++ PA G VWE + + G P G+ LR KG G++
Sbjct: 778 GELAFEIAIPAWHGLQVWEDVYAAGQEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTP 837
Query: 307 LEAGLWNSISLDKGCYKGQETISR 330
+AG+ +S K + G+ + SR
Sbjct: 838 QDAGMEWVVSKLKD-FVGKRSFSR 860
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 112/291 (38%), Gaps = 19/291 (6%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAV 167
D+SH + ++ G DR++ + + + LR QG ++F +D
Sbjct: 52 DVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGH 111
Query: 168 ILVVSPLTCSSITEMLNKYVFFADKV-EIQDITK-------QTCLFVVVGPKSNQVMRDL 219
+ VVS C DKV E+Q+ + L + GP + QV++
Sbjct: 112 LYVVSNAGCWE-----KDLALMQDKVRELQNQGRDVGLEVLDNALLALQGPTAAQVLQAG 166
Query: 220 NLGDLVGEAYGTHRHYSVNGMP-ITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVP 278
DL + T V G+ V E+G + + A A + +L V
Sbjct: 167 VADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVK 226
Query: 279 M-GSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-WNSISLDKGC--YKGQETISRLITY 334
+ G A + LR+ G G ++ +E L W + + G + I +
Sbjct: 227 LAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKG 286
Query: 335 DGLKQRLWGICLSAPAEPGSPII-VDGKKVGKLTSYTLGRKESDHFGLGYI 384
++R+ +C AP SPI+ ++G K+G +TS + +GY+
Sbjct: 287 RVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYV 337
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 131/339 (38%), Gaps = 38/339 (11%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A + V +D + G+I + G D +FL+ T + L+ G G V D
Sbjct: 619 AVRDSVGMLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDG 678
Query: 159 HAW-IMKNAVILVVSPLTCSSITEMLNKYV--FFAD-KVEIQDITKQTCLFVVVGPKSNQ 214
+ ++ +L + + + + L +++ + D V +T+Q VVGP+S
Sbjct: 679 VTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRD 738
Query: 215 VMRDL-NLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMS-----PAAAG-SV 267
V+ L + D+ E + + + + + G+ IS FS ++ PA G V
Sbjct: 739 VIAKLASTVDVSNEGF---KFMAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGLRV 795
Query: 268 WETLLSQGA----VPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-W---------- 312
WE + + G P G+ LR KG G++ +AG+ W
Sbjct: 796 WEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFIG 855
Query: 313 -NSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPII--VDGKKVGKLTSY 369
S S + ++ + ++ D + G L A S I ++G S
Sbjct: 856 NRSYSRADNAREDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPMEGWVTSSYDSP 915
Query: 370 TLGRKESDHFGLGYIKRKDALGGDTVT--VGDNIVGTVV 406
LGR FGL IK G+ + VGD +V VV
Sbjct: 916 NLGRT----FGLALIKNGRNRIGEVLKTPVGDQLVDVVV 950
>pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System
Aminomethyltransferase T From Bartonella Henselae
Length = 393
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 15/209 (7%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNA 166
D+SH I V G ++FL + +L+ GQ + + A + D+ + +
Sbjct: 80 DISHMKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRLAECR 139
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGD--- 223
+LV + + L K F E Q I + L + GP++ V+ D L
Sbjct: 140 FMLVANAGNAQADFAELEKRAF---GFECQVIALERVLLALQGPQAAAVLADAGLPGNEL 196
Query: 224 LVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVP-MGSN 282
L + + + + + T E+GF + + A ++ E LL V +G
Sbjct: 197 LFMQGFEPQQDWFITRSGYT-------GEDGFEIALPIGCARALAEKLLGDSRVEWVGLA 249
Query: 283 AWEKLRIIKGRPAPGKELTNEFNVLEAGL 311
A + LR+ G G ++T + ++A L
Sbjct: 250 ARDSLRLEAGLCLHGNDITPDTTPIDAAL 278
>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 18/209 (8%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158
A + V +D + G+I + G D +FL+ T + L+ G G V D
Sbjct: 619 AVRDSVGXLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGXGRYGVXCKADGXIFDDG 678
Query: 159 HAW-IMKNAVILVVSPLTCSSITEMLNKYV--FFAD-KVEIQDITKQTCLFVVVGPKSNQ 214
+ ++ +L + + + + L +++ + D V +T+Q VVGP+S
Sbjct: 679 VTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRD 738
Query: 215 VMRDL-NLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMS-----PAAAG-SV 267
V+ L + D+ E + + + + + G+ IS FS ++ PA G V
Sbjct: 739 VIAKLASTVDVSNEGF---KFXAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGLRV 795
Query: 268 WETLLSQGA----VPMGSNAWEKLRIIKG 292
WE + + G P G+ LR KG
Sbjct: 796 WEDVYAAGEEFNITPYGTETXHVLRAEKG 824
>pdb|1NRK|A Chain A, Ygfz Protein
Length = 328
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 315 ISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEP 352
IS KGCY GQE ++R K+ LW + SA P
Sbjct: 225 ISFKKGCYTGQEXVARAKFRGANKRALWLLAGSASRLP 262
>pdb|1VLY|A Chain A, Crystal Structure Of A Putative Aminomethyltransferase
(Ygfz) From Escherichia Coli At 1.30 A Resolution
Length = 338
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 315 ISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEP 352
IS KGCY GQE ++R K+ LW + SA P
Sbjct: 234 ISFKKGCYTGQEXVARAKFRGANKRALWLLAGSASRLP 271
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|B Chain B, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|C Chain C, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|D Chain D, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8J|A Chain A, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|B Chain B, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|C Chain C, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|D Chain D, Crystal Structure Of Et-Ehred Complex
Length = 364
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 35/89 (39%)
Query: 230 GTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRI 289
G + V + + E G+ + + A W L+ G P G A + LR+
Sbjct: 170 GMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRL 229
Query: 290 IKGRPAPGKELTNEFNVLEAGLWNSISLD 318
G G+E+ + L A + +I+ +
Sbjct: 230 EAGMNLYGQEMDETISPLAANMGWTIAWE 258
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|B Chain B, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|C Chain C, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|D Chain D, Crystal Structure Of Etd97n-Ehred Complex
Length = 364
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 35/89 (39%)
Query: 230 GTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRI 289
G + V + + E G+ + + A W L+ G P G A + LR+
Sbjct: 170 GMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRL 229
Query: 290 IKGRPAPGKELTNEFNVLEAGLWNSISLD 318
G G+E+ + L A + +I+ +
Sbjct: 230 EAGMNLYGQEMDETISPLAANMGWTIAWE 258
>pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein;
Tetrahydrofolate-Dependent) Of Glycine Cleavage System
(Np417381) From Escherichia Coli K12 At 1.70 A
Resolution
Length = 381
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 29/80 (36%)
Query: 230 GTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRI 289
G + V + + E G+ + + A W L+ G P G A + LR+
Sbjct: 182 GXKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRL 241
Query: 290 IKGRPAPGKELTNEFNVLEA 309
G G+E + L A
Sbjct: 242 EAGXNLYGQEXDETISPLAA 261
>pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Initial Trna Binding State
pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Initial Trna Binding State
pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Pre-Reaction State
pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Adenylated Intermediate State
pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Adenylated Intermediate State
Length = 380
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 7/37 (18%)
Query: 349 PAEPGSPIIVDGKKVGK---LTSYTLGRKESDHFGLG 382
PA+PG I VDG ++G+ L +TLG+++ GLG
Sbjct: 227 PAQPGKIITVDGDEIGEHQGLMYHTLGQRK----GLG 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,515,448
Number of Sequences: 62578
Number of extensions: 538294
Number of successful extensions: 1373
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 31
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)