Query 014411
Match_columns 425
No_of_seqs 283 out of 1735
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2844 Dimethylglycine dehydr 100.0 1.5E-84 3.3E-89 662.1 30.7 396 11-414 397-849 (856)
2 COG0404 GcvT Glycine cleavage 100.0 3.8E-82 8.3E-87 632.5 40.9 357 56-419 2-378 (379)
3 PLN02319 aminomethyltransferas 100.0 4.6E-79 1E-83 623.2 43.3 357 55-419 28-404 (404)
4 PRK13579 gcvT glycine cleavage 100.0 7.6E-78 1.6E-82 608.4 41.9 352 55-417 5-370 (370)
5 PRK12486 dmdA putative dimethy 100.0 1.8E-74 3.9E-79 582.4 40.3 337 68-411 14-368 (368)
6 PRK00389 gcvT glycine cleavage 100.0 2E-73 4.4E-78 574.6 42.9 346 59-415 2-358 (359)
7 TIGR00528 gcvT glycine cleavag 100.0 4E-73 8.6E-78 572.7 41.0 340 70-412 6-360 (361)
8 TIGR01372 soxA sarcosine oxida 100.0 6.5E-72 1.4E-76 625.5 42.8 356 58-419 595-984 (985)
9 KOG2770 Aminomethyl transferas 100.0 5.4E-66 1.2E-70 491.2 30.2 349 69-419 29-401 (401)
10 PRK09559 putative global regul 100.0 1.8E-50 3.9E-55 402.2 34.0 297 104-413 19-326 (327)
11 PF01571 GCV_T: Aminomethyltra 100.0 5.8E-43 1.3E-47 327.2 22.6 206 106-314 1-211 (211)
12 COG0354 Predicted aminomethylt 100.0 4.5E-42 9.8E-47 335.0 19.9 288 100-418 10-302 (305)
13 KOG2929 Transcription factor, 100.0 1.1E-31 2.3E-36 254.4 13.6 281 104-414 30-339 (348)
14 TIGR03317 ygfZ_signature folat 99.8 1.2E-20 2.5E-25 144.5 6.7 63 283-345 2-66 (67)
15 PF08669 GCV_T_C: Glycine clea 99.8 1.5E-19 3.2E-24 148.0 12.2 89 320-408 1-95 (95)
16 TIGR01375 soxG sarcosine oxida 99.8 3.3E-19 7.2E-24 158.6 15.2 115 158-276 35-151 (152)
17 PF04268 SoxG: Sarcosine oxida 99.1 2.2E-09 4.8E-14 94.9 13.1 110 158-274 33-144 (147)
18 COG4583 Sarcosine oxidase gamm 98.8 1.3E-07 2.9E-12 85.0 15.2 150 105-274 28-183 (189)
19 PF04268 SoxG: Sarcosine oxida 97.4 0.0016 3.4E-08 57.6 9.9 82 99-185 59-143 (147)
20 TIGR01375 soxG sarcosine oxida 97.0 0.0064 1.4E-07 53.9 10.3 79 103-186 68-149 (152)
21 COG4583 Sarcosine oxidase gamm 96.3 0.021 4.5E-07 51.9 8.6 82 100-186 99-183 (189)
22 PF10396 TrmE_N: GTP-binding p 95.9 0.042 9.1E-07 46.3 7.9 49 110-161 12-60 (114)
23 PF10396 TrmE_N: GTP-binding p 95.6 0.057 1.2E-06 45.5 7.5 85 200-285 12-106 (114)
24 PF08170 POPLD: POPLD (NUC188) 95.2 0.043 9.4E-07 44.5 5.4 49 254-302 1-49 (92)
25 PRK05291 trmE tRNA modificatio 93.0 0.57 1.2E-05 49.0 9.7 48 110-160 17-64 (449)
26 COG0486 ThdF Predicted GTPase 91.4 0.43 9.3E-06 49.4 6.3 50 111-161 18-67 (454)
27 PF01571 GCV_T: Aminomethyltra 88.4 3.9 8.5E-05 37.6 9.8 74 196-273 2-81 (211)
28 PRK00389 gcvT glycine cleavage 86.6 4.7 0.0001 40.7 9.9 79 192-274 43-127 (359)
29 TIGR00528 gcvT glycine cleavag 83.7 7.6 0.00016 39.3 9.8 78 192-273 42-125 (361)
30 COG0404 GcvT Glycine cleavage 83.4 8.2 0.00018 39.5 9.9 78 192-273 47-130 (379)
31 TIGR00450 mnmE_trmE_thdF tRNA 81.7 7.5 0.00016 40.7 9.0 80 200-279 7-97 (442)
32 PLN02319 aminomethyltransferas 81.0 13 0.00029 38.2 10.5 78 192-273 74-157 (404)
33 TIGR00450 mnmE_trmE_thdF tRNA 79.0 4.1 8.9E-05 42.6 6.0 50 110-160 7-56 (442)
34 PRK12486 dmdA putative dimethy 76.1 22 0.00048 36.1 10.3 78 192-273 53-136 (368)
35 COG0486 ThdF Predicted GTPase 74.4 9.5 0.00021 39.7 7.0 77 200-277 17-105 (454)
36 PRK13579 gcvT glycine cleavage 74.2 26 0.00056 35.6 10.3 77 192-273 51-133 (370)
37 TIGR01372 soxA sarcosine oxida 71.3 25 0.00055 40.6 10.4 78 192-273 645-728 (985)
38 PRK09559 putative global regul 58.2 39 0.00085 33.6 7.7 77 193-274 19-101 (327)
39 PF02470 MCE: mce related prot 55.9 91 0.002 23.9 8.4 40 349-388 14-53 (81)
40 KOG2770 Aminomethyl transferas 54.7 29 0.00063 34.9 5.8 86 95-184 151-244 (401)
41 COG0386 BtuE Glutathione perox 53.9 45 0.00097 29.7 6.3 84 70-156 49-141 (162)
42 PF06978 POP1: Ribonucleases P 51.5 14 0.00031 33.9 3.0 49 70-119 133-186 (187)
43 COG0354 Predicted aminomethylt 49.9 44 0.00096 33.1 6.4 80 193-274 14-96 (305)
44 PF11834 DUF3354: Domain of un 34.0 72 0.0016 24.4 4.0 45 119-169 24-68 (69)
45 KOG0688 Peptide chain release 32.6 1.6E+02 0.0034 29.6 6.9 86 130-221 80-170 (431)
46 COG3323 Uncharacterized protei 28.5 59 0.0013 27.1 2.8 27 254-280 7-33 (109)
47 KOG2844 Dimethylglycine dehydr 26.7 3E+02 0.0065 30.6 8.4 90 95-185 599-690 (856)
48 PF00673 Ribosomal_L5_C: ribos 26.6 47 0.001 26.9 2.0 42 113-154 4-45 (95)
49 COG5508 Uncharacterized conser 23.0 34 0.00073 26.9 0.5 10 20-29 67-76 (84)
50 PF08308 PEGA: PEGA domain; I 20.6 3.1E+02 0.0068 20.1 5.5 14 351-364 10-23 (71)
No 1
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-84 Score=662.14 Aligned_cols=396 Identities=24% Similarity=0.331 Sum_probs=366.2
Q ss_pred EEEeccccc----eecccccCccCCcchhhhcccccccceEeeecCCC---CCCCCCCCCCCCCcccHHHHHHCCCeEec
Q 014411 11 HLIVGSTSR----LHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGAKISG 83 (425)
Q Consensus 11 ~~~~~~~~~----~~~~r~~~~~~~~~~~~~k~~e~~~~~~~~~~p~~---~gr~~~~~p~~~~~~l~~~~~~~Ga~f~~ 83 (425)
-||.|+|+. +|+|||+.++.|+.|+++|++|+|+++|++.||++ |||++|++| ||++++++||+|++
T Consensus 397 wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sp------ly~~L~~aGav~~e 470 (856)
T KOG2844|consen 397 WIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSP------LYDRLESAGAVFGE 470 (856)
T ss_pred HhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCc------cHHHHHhcccchhh
Confidence 378899988 99999999998888999999999999999999999 999999999 99999999999999
Q ss_pred -CC--cccccC--------------------Ch----HHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCC
Q 014411 84 -EG--IVETFG--------------------ND----GEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEI 136 (425)
Q Consensus 84 -~G--~p~~f~--------------------~~----~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~ 136 (425)
.| ||.+|- +| +.||+|||+.|+++|+|.|+|+.|.|+||.+.||+++++|++.
T Consensus 471 ~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSanv~~ 550 (856)
T KOG2844|consen 471 KHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSANVDV 550 (856)
T ss_pred hccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhcCCCC
Confidence 88 997761 22 7999999999999999999999999999999999999999995
Q ss_pred CCCCceEEeeeeCCCCcEE-EEEEEEEeCCeEEEEECCCChHHHHHHHHhcccC-CCCeEEEEecCcEEEEEEeCCChHH
Q 014411 137 LREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGPKSNQ 214 (425)
Q Consensus 137 l~~G~~~~t~~Ln~~G~i~-d~~iv~~~~d~~~l~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~l~GP~a~~ 214 (425)
++|..+||+|||++|++. |.++.++++++|+|+.+...+.+.+.||+++... ..+|.++|+|++|++|+|+||.||.
T Consensus 551 -~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~~~~l~i~GP~sR~ 629 (856)
T KOG2844|consen 551 -PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDELGALSIIGPQSRK 629 (856)
T ss_pred -CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhhhceeeecCchHHH
Confidence 899999999999999999 6688899999999999999999999999998532 2379999999999999999999999
Q ss_pred HHHhcccCCCCC--CCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCCC----CCCCHHHHHHHH
Q 014411 215 VMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA----VPMGSNAWEKLR 288 (425)
Q Consensus 215 vl~~l~~~dl~~--~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG~----~~~G~~a~~~lR 288 (425)
+|++|++.|+++ |||.+++.+.++++.++++|++++||+|||||+|++++.+||++|++||+ +.+|.+|+++||
T Consensus 630 vLqelt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~~l~naGyya~~aLr 709 (856)
T KOG2844|consen 630 VLQELTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEEGLQNAGYYALRALR 709 (856)
T ss_pred HHHhccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhhccccchhHHHHHHH
Confidence 999999999997 99999999999999999999999999999999999999999999999985 789999999999
Q ss_pred HHcCCCCCCCCCCCCCCccccccccccccCCC-CcccHHHHHHHHhhCCCceEEEEEEEcC---CCCCCCceeeCCeeee
Q 014411 289 IIKGRPAPGKELTNEFNVLEAGLWNSISLDKG-CYKGQETISRLITYDGLKQRLWGICLSA---PAEPGSPIIVDGKKVG 364 (425)
Q Consensus 289 iE~G~~~~g~dl~~~~~P~EagL~~~V~~~Kg-cfiGqEal~r~~~~~~~~rrLv~l~~~~---~~~~g~~I~~~g~~VG 364 (425)
|||+|..||.|++++.||+|+|+.+.|+|+|+ |||||+|++.+++ .|+|||||.|++++ ++++||+||.||+.||
T Consensus 710 iEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k~p~dFiGk~ALeqqra-~GlkkrlV~l~l~d~d~~~~G~E~I~rnG~~VG 788 (856)
T KOG2844|consen 710 IEKFYRAWGQDLNPDTTPLEAGLEFRVKLKKPADFIGKQALEQQKA-EGLKKRLVCLTLDDHDPDPWGGEPIYRNGQVVG 788 (856)
T ss_pred HHHHHHhhccccCCCCChhhccceeEEecCCCccchhHHHHHHHHH-hhhhheEEEEEecCCCCCccCCcceeeCCEEEe
Confidence 99999999999999999999999999999998 9999999999985 88999999999985 3788999999999999
Q ss_pred EEEEeeeCCCCCCeEEEEEEeCC--------CCCCCC-EEEe-CCeEeEEEEe-CCCCCCC
Q 014411 365 KLTSYTLGRKESDHFGLGYIKRK--------DALGGD-TVTV-GDNIVGTVVE-VPFLARQ 414 (425)
Q Consensus 365 ~vtS~~~s~~~~~~iala~v~~~--------~a~~g~-~l~~-g~~~~a~v~~-~Pf~~~~ 414 (425)
.+||++||++++|++++|||+.. +...|. +|++ |++++|++.- .||.+..
T Consensus 789 ~ttsa~Y~ytl~k~v~~gyV~n~~e~~V~~d~V~sg~yEvdi~Gkry~a~~~l~sP~~pt~ 849 (856)
T KOG2844|consen 789 NTTSAAYGYTLGKSVCLGYVHNFEEFPVSLDFVGSGEYEVDIAGKRYPAKANLHSPSLPTE 849 (856)
T ss_pred eeeeccceeeecceEEEEEecccccCccCHHHhcCCcEEEEecccccceeEEecCCCCCcc
Confidence 99999999999999999999943 333343 4554 9999998864 4887665
No 2
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-82 Score=632.53 Aligned_cols=357 Identities=25% Similarity=0.401 Sum_probs=332.1
Q ss_pred CCCCCCCCCCCCcccHHHHHHCCCeEecC-C--cccccC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccc
Q 014411 56 VLPFDLSPPPIDHDLLETVKSEGAKISGE-G--IVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQST 131 (425)
Q Consensus 56 gr~~~~~p~~~~~~l~~~~~~~Ga~f~~~-G--~p~~f~-~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~t 131 (425)
.|++|++| ||++|+++||+|+++ | ||.+|+ ++.+||.|||++|||||+|||++++|+||||.+|||++++
T Consensus 2 ~~~~r~tp------l~~~~~~~GA~~~~~~Gw~~p~~y~~~v~~Eh~avR~~aGlfDvShmgk~~V~GpdA~~~L~~l~~ 75 (379)
T COG0404 2 ARPLKRTP------LYDRHKALGAVFGEFGGWEMPVWYAKSVMEEHLAVREAAGLFDVSHMGKVEVSGPDAAAFLQRLLT 75 (379)
T ss_pred Cccccccc------hHHHHHhcCCEEEeeCCEecceecCccHHHHHHHHHhcCceEeccCceEEEEECCCHHHHHHHHcc
Confidence 58889988 999999999999994 5 999999 8999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEeeeeCCCCcEEEEEEEE-EeCCeEEEEECCCChHHHHHHHHhccc-CCCCeEEEEecCcEEEEEEeC
Q 014411 132 ANFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVF-FADKVEIQDITKQTCLFVVVG 209 (425)
Q Consensus 132 ndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~-~~~d~~~l~~~~~~~~~~~~~L~~~~~-~~~~V~i~d~t~~~~~l~l~G 209 (425)
||++++++|+++|++|||++|+|+||++++ +.+|+|+|++++++.+++++||+++.. +..+|+++++|+++++|+|||
T Consensus 76 ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~~~~~~~~~v~~~~~t~~~~~lalqG 155 (379)
T COG0404 76 NDVSKLKPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLERHQAGPDLDVTLTSVTEDLAVLALQG 155 (379)
T ss_pred cccCcCCCCcEEEeeeECCCCCEEeeEEEEEecCCeEEEEeCccchHHHHHHHHHhhccCCcceEEeeccccEEEEEEEC
Confidence 999999999999999999999999887766 678899999999999999999998532 234799999999999999999
Q ss_pred CChHHHHHhcccCCC-CCCCCceeeEEEECCe-eEEEeecCccCCCeEEEEeccccHHHHHHHHHhCC----CCCCCHHH
Q 014411 210 PKSNQVMRDLNLGDL-VGEAYGTHRHYSVNGM-PITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNA 283 (425)
Q Consensus 210 P~a~~vl~~l~~~dl-~~~p~~~~~~~~i~g~-~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG----~~~~G~~a 283 (425)
|+|+++|++++..++ .+|||+.++.+.+.+. +|++.|+||+||+||||+||.+++.++|++|+++| .+|+|++|
T Consensus 156 PkAr~il~~~~~~~~~~~l~~~~~~~~~i~g~~~~~i~R~gyTGE~G~Ei~~p~~~a~~vw~aL~~aG~~~g~~P~Gl~A 235 (379)
T COG0404 156 PKAREVLAKLVDGDLVEALPFFAFKEVTIGGGVPVRISRTGYTGELGFEIYVPAEDAAAVWDALLEAGEKFGVKPCGLGA 235 (379)
T ss_pred cCHHHHHHHhccccccccCCceEEEEEEecCCceEEEEeccccCCCeEEEEecHHHHHHHHHHHHHhhhhcCceEeecch
Confidence 999999999998874 7799999999999877 79999999999999999999999999999999995 69999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCccccccccccccCCCCcccHHHHHHHHhhCCCceEEEEEEEcC---CCCCCCcee-eC
Q 014411 284 WEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSA---PAEPGSPII-VD 359 (425)
Q Consensus 284 ~~~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~KgcfiGqEal~r~~~~~~~~rrLv~l~~~~---~~~~g~~I~-~~ 359 (425)
+++|||||||+.||+|++++++|+|+||+|+|+++|.+|+|++++.+++..+. +|+||+|.+++ .+..|++|+ .+
T Consensus 236 ~dtLRlE~g~~l~g~d~~~~~~P~eagl~~~v~~~k~dFiGk~al~~~k~~g~-~r~lVgl~~~~~~~~~~~g~~v~~~~ 314 (379)
T COG0404 236 RDTLRLEAGLRLYGQDLDETITPLEAGLGWAVKLDKDDFIGKAALLREKAKGV-RRKLVGLKLDDKGPVLRGGEPVLDAD 314 (379)
T ss_pred hhHhhhhcCccccccccCCCCCHhhcCcceEecCCCcCCcCHHHHHhhhhcCC-ceEEEEEEEcCCCCCCCCCCeEEecC
Confidence 99999999999999999999999999999999999999999999999986444 67899999986 357899999 68
Q ss_pred Cee-eeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCCC
Q 014411 360 GKK-VGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPLL 419 (425)
Q Consensus 360 g~~-VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~~ 419 (425)
|+. ||+|||++|||++|++||||||+.+++..|++|.+ +++++|+|+..||++|++.+++
T Consensus 315 g~~~vG~VTSg~~Sptlg~~IAla~v~~~~~~~G~~~~v~i~~~~~~a~V~~~pf~dp~~~r~~ 378 (379)
T COG0404 315 GEVEVGEVTSGTFSPTLGKSIALAYVDSDYAKPGTELEVEIRGKRVPARVVKPPFYDPEGERLR 378 (379)
T ss_pred CCEeEEEEeeccccccCCCeeEEEEechhhccCCcEEEEEECCeEEEEEEecCCCcCccccccC
Confidence 884 99999999999999999999999999999999764 7889999999999999988765
No 3
>PLN02319 aminomethyltransferase
Probab=100.00 E-value=4.6e-79 Score=623.23 Aligned_cols=357 Identities=22% Similarity=0.316 Sum_probs=329.1
Q ss_pred CCCCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhcc
Q 014411 55 AVLPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQS 130 (425)
Q Consensus 55 ~gr~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~-~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~ 130 (425)
+.||+|+|| ||++|+++||+|++ +| +|.+|+ ...+||+|||++|+|+|+|++++|+|+|+||.+|||+++
T Consensus 28 ~~r~~r~tp------l~~~~~~~Ga~~~~~~Gwe~p~~y~~~~~~E~~a~R~~~gl~DlS~~~~i~V~G~Da~~fLq~l~ 101 (404)
T PLN02319 28 SEANLKKTA------LYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDAIPFLETLV 101 (404)
T ss_pred CCCCcccCC------cHHHHHHCCCEEEEECCEehhhhcCccHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHhhhc
Confidence 679999999 99999999999999 67 999997 578999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEe-CCeEEEEECCCChHHHHHHHHhcccCC----CCeEEEEecCcEEEE
Q 014411 131 TANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNAVILVVSPLTCSSITEMLNKYVFFA----DKVEIQDITKQTCLF 205 (425)
Q Consensus 131 tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~-~d~~~l~~~~~~~~~~~~~L~~~~~~~----~~V~i~d~t~~~~~l 205 (425)
||||.++++|+++||++||++|+|++|+++++. +|+|+|+++++..+.+++||++++... .+|++ ++++++++|
T Consensus 102 t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~~~~~~~l 180 (404)
T PLN02319 102 VADIAGLKDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSW-HVHDERSLL 180 (404)
T ss_pred ccccCCCCCCCEEEeEEECCCCeEEEEEEEEEEcCCEEEEEECCccHHHHHHHHHhhhhhccCCCCcEEE-EEcCCeEEE
Confidence 999999999999999999999999988777765 899999999999999999999986431 24666 568999999
Q ss_pred EEeCCChHHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCC---CCCCCHH
Q 014411 206 VVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG---AVPMGSN 282 (425)
Q Consensus 206 ~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG---~~~~G~~ 282 (425)
+|+||+|+++|+++.+.|++++||++++.+.+++.++++.|++|+||+||||++|.+++.++|++|+++| +.|+|.+
T Consensus 181 ~lqGP~s~~~l~~l~~~~l~~~~f~~~~~~~i~g~~v~i~R~g~tGE~G~El~~p~~~a~~l~~~L~~aG~~g~~~~G~~ 260 (404)
T PLN02319 181 ALQGPLAAPVLQHLTKEDLSKMYFGDFRITDINGADCFLTRTGYTGEDGFEISVPSEHAVDLAKALLEKSEGKVRLTGLG 260 (404)
T ss_pred EEECccHHHHHHHhcccchhhCCCceEEEEEECCeeEEEEEeeecCCCeEEEEEcHHHHHHHHHHHHhCcccCcEecchh
Confidence 9999999999999998899999999999999999999999999999999999999999999999999986 6899999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCccccccccccc---cCCCCcccHHHHHHHHhhCCCceEEEEEEEcC-CCCCCCcee-
Q 014411 283 AWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSIS---LDKGCYKGQETISRLITYDGLKQRLWGICLSA-PAEPGSPII- 357 (425)
Q Consensus 283 a~~~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~---~~KgcfiGqEal~r~~~~~~~~rrLv~l~~~~-~~~~g~~I~- 357 (425)
+|+++|||+|+|.||.|++++++|+|+||+++|+ |+||||+|||+++|+++ .|++||+++|..+. ++..|.+|+
T Consensus 261 a~d~lRiEaG~p~~g~dl~~~~~P~EagL~~~v~~~~~~Kg~fiGqEalar~~~-~g~~rrlvgl~~~~~~~~~g~~v~~ 339 (404)
T PLN02319 261 ARDSLRLEAGLCLYGNDLEEHITPVEAGLAWTIGKRRRAEGGFLGADVILKQLK-EGVSRRRVGFISSGAPARSHSEILD 339 (404)
T ss_pred HhhHHHhhcCccccCCcCCCCCCHHHCCccceecccccCCCCCcCHHHHHHHHh-cCCCeEEEEEEECCccCCCCCEEEe
Confidence 9999999999999999999999999999999887 68999999999999986 67889999996554 456788887
Q ss_pred eCCeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCCC
Q 014411 358 VDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPLL 419 (425)
Q Consensus 358 ~~g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~~ 419 (425)
.+|+.||.|||++|||+++++||||||+.+++.+|++|++ |+.++|+|+..||+++++++++
T Consensus 340 ~~g~~VG~VTS~~~Sp~l~~~Iala~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~~~~~~~~~ 404 (404)
T PLN02319 340 ESGEKIGEVTSGGFSPCLKKNIAMGYVKSGFHKAGTEVKVEVRGKMYDAVVTKMPFVPTKYYKPP 404 (404)
T ss_pred CCCCEEEEEeeecccccCCceEEEEEEChhhcCCCCEEEEEECCeEEEEEEECCCCcCcccCCCC
Confidence 4799999999999999999999999999999889999886 6789999999999999987764
No 4
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=100.00 E-value=7.6e-78 Score=608.44 Aligned_cols=352 Identities=22% Similarity=0.337 Sum_probs=327.2
Q ss_pred CCCCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhcc
Q 014411 55 AVLPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQS 130 (425)
Q Consensus 55 ~gr~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~-~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~ 130 (425)
.+||+|+|| ||++|+++||+|++ +| +|.+|+ ++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++
T Consensus 5 ~~~~~r~~p------l~~~~~~~ga~~~~~~g~e~p~~f~~~~~~E~~avr~~a~l~Dls~~~~i~v~G~Da~~fLq~~~ 78 (370)
T PRK13579 5 DTSPLKTLP------LHALHLAAGARMVPFAGYDMPVQYPAGVLKEHLHTRAHAGLFDVSHMGQIEVSGKDAAAALERLV 78 (370)
T ss_pred CCCccccCc------cHHHHHHCCCEEEEECCeecccccCccHHHHHHHHHhccEEEECCCcEEEEEECCCHHHHHHHhc
Confidence 469999999 99999999999999 57 999997 689999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCC
Q 014411 131 TANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGP 210 (425)
Q Consensus 131 tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP 210 (425)
||||.++++|+++|+++||+||+|++|+++++.+|+|||+++++..+.+++||++++ .. +|+|+|++ ++++++|+||
T Consensus 79 tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~~d~~~L~~~~~~~~~~~~~l~~~~-~~-~V~i~d~~-~~~~l~l~GP 155 (370)
T PRK13579 79 PVDILALKEGRQRYTFFTNEQGGILDDLMVTNLGDHLFLVVNAACKDADIAHLREHL-SD-ECEVNPLD-DRALLALQGP 155 (370)
T ss_pred cccCCCCCCCCEEEeEEECCCCeEEEeEEEEEECCeEEEEECcCCHHHHHHHHHHhC-CC-CcEEEECC-CcEEEEEECc
Confidence 999999999999999999999999988888877899999999999999999999985 44 79999986 5899999999
Q ss_pred ChHHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 014411 211 KSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRI 289 (425)
Q Consensus 211 ~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~a~~~lRi 289 (425)
+|+++|++++ .+++++||++++.+.+++.++++.|++|+||+||||++|.+++..+|++|+++ |..++|..+|+++||
T Consensus 156 ~a~~il~~l~-~~~~~~~~~~~~~~~~~g~~~~i~R~~~~Ge~G~el~~~~~~~~~l~~~l~~~~g~~~~G~~a~~~lRi 234 (370)
T PRK13579 156 EAEAVLADLG-PPVAALRFMDGFEPRLHGVDCFVSRSGYTGEDGFEISVPADAAEALAEALLADPRVEPIGLGARDSLRL 234 (370)
T ss_pred CHHHHHHHhh-hhhhcCCCceEEEEEECCeEEEEEEeeecCCCEEEEEEcHHHHHHHHHHHHccCCceEechhhhhHHHh
Confidence 9999999997 56778999999999999999999999999999999999999999999999997 678999999999999
Q ss_pred HcCCCCCCCCCCCCCCcccccccccccc---CCCCcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceeeC-Ceee
Q 014411 290 IKGRPAPGKELTNEFNVLEAGLWNSISL---DKGCYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPIIVD-GKKV 363 (425)
Q Consensus 290 E~G~~~~g~dl~~~~~P~EagL~~~V~~---~KgcfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~~-g~~V 363 (425)
|+|+|.||.|++++++|+|+||+++|++ +||||+|||+++|+++ .|.+||+++|++++ ++.+|++|+.+ |+.|
T Consensus 235 E~G~p~~g~dl~~~~~P~E~gL~~~v~~~~~~KgcyiGqEalar~~~-~G~~kr~v~l~~~~~~~~~~g~~v~~~~g~~V 313 (370)
T PRK13579 235 EAGLCLYGHDIDTTTTPVEAALEWAIQKARREAGGFPGAKAILAALA-KGASRRRVGLKPEGRAPVREGAPLFDDAGTEI 313 (370)
T ss_pred hcCCcccCCcCCCCCCHHHCCccceecCCCCCCCCCcCHHHHHHHHh-cCCCeEEEEEEECCccCCCCCCEEEcCCCceE
Confidence 9999999999999999999999988874 7899999999999986 55677889999875 56689999987 5999
Q ss_pred eEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCC
Q 014411 364 GKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPP 417 (425)
Q Consensus 364 G~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~ 417 (425)
|+|||++|||+++++||||||+.+++++|++|++ |++++|+|+..||+++++.+
T Consensus 314 G~VtS~~~sp~l~~~iala~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~~~~~~~ 370 (370)
T PRK13579 314 GTVTSGGFGPSVGGPVAMGYVPASLAAPGTAVFAEVRGKRLPVTVHALPFVPHRYKR 370 (370)
T ss_pred EEEeecCcchhcCCeEEEEEEChhhcCCCCEEEEEECCEEEEEEEEcCCcccCCccC
Confidence 9999999999999999999999999999999886 77899999999999988653
No 5
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=100.00 E-value=1.8e-74 Score=582.43 Aligned_cols=337 Identities=15% Similarity=0.223 Sum_probs=301.4
Q ss_pred cccHHHHHHCCCeEe-cC-C--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceE
Q 014411 68 HDLLETVKSEGAKIS-GE-G--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGC 143 (425)
Q Consensus 68 ~~l~~~~~~~Ga~f~-~~-G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~ 143 (425)
||||++|+++||+|. .+ | +|.+|+++.+||+|+|++|+|||+|+|++|+|+|+||.+|||+++||||.++++|+++
T Consensus 14 t~l~~~h~~~ga~~~~~~~g~~~p~~~~~~~~E~~A~R~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t~di~~l~~G~~~ 93 (368)
T PRK12486 14 TPFSDGVEAAGVKAYTVYNHMLLPTVFESVEDDYAHLKEHVQVWDVAVERQVEIRGPDAARLVQMLTPRDLRGMKPGQCY 93 (368)
T ss_pred CCCHHHHHHCCCeEEecCCCeECccccCCHHHHHHHHHhcceEEEcCCcEEEEEECCCHHHHHHHhcccccccCCCCcEE
Confidence 339999999999965 55 6 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeCCCCcEEEEEEEE-EeCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccC
Q 014411 144 DTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLG 222 (425)
Q Consensus 144 ~t~~Ln~~G~i~d~~iv~-~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~ 222 (425)
||++||++|+|++|++++ +.+|+|+|+++.+ ....||++++.. +++.+++.++++++++||||+|+++|+++++.
T Consensus 94 yt~~ln~~G~i~~D~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~-~~~~v~~~~~~~~~l~lqGP~s~~il~~l~~~ 169 (368)
T PRK12486 94 YVPIVDETGGMLNDPVALKLAEDRWWISIADS---DLLLWVKGLANG-RKLDVLVVEPDVSPLAVQGPKADALMARVFGE 169 (368)
T ss_pred EEEEEcCCCcEEeeEEEEEecCCEEEEEEcCc---cHHHHHHHhhhh-cCCcEEEecCCeEEEEeECcCHHHHHHHHhcC
Confidence 999999999999876665 5588898887654 457888877433 34566666788999999999999999999988
Q ss_pred CCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccc-cHHHHHHHHHhCCC----CCCCHHHHHHHHHHcCCCCCC
Q 014411 223 DLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPA-AAGSVWETLLSQGA----VPMGSNAWEKLRIIKGRPAPG 297 (425)
Q Consensus 223 dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~-~a~~l~~~L~~aG~----~~~G~~a~~~lRiE~G~~~~g 297 (425)
+++++||++++.+.+++.++++.|++|+||+|||||++++ ++.++|++|+++|. .+.|..++ +|||+||+.||
T Consensus 170 ~l~~~~~~~~~~~~i~g~~~~i~R~g~tGE~G~Ei~~~~~~~a~~l~~~L~~aG~~~~~~~~~~~~~--~RlE~G~~~~g 247 (368)
T PRK12486 170 AIRDLRFFRFGYFDFEGTDLVIARSGYSKQGGFEIYVEGSDLGMPLWDALFEAGKDLNVRAGCPNLI--ERIEGGLLSYG 247 (368)
T ss_pred ChhhCCCceeEEEEECCcEEEEEeccccCCceEEEEeccHHHHHHHHHHHHhcccccCcccccChhH--hHHhccccccc
Confidence 8999999999999999999999999999999999999986 68999999999875 45555444 69999999999
Q ss_pred CCCCCCCCccccccccccccCCC-CcccHHHHHHHHhhCCCceEEEEEEEcCC--CC--CCCceeeCCeeeeEEEEeeeC
Q 014411 298 KELTNEFNVLEAGLWNSISLDKG-CYKGQETISRLITYDGLKQRLWGICLSAP--AE--PGSPIIVDGKKVGKLTSYTLG 372 (425)
Q Consensus 298 ~dl~~~~~P~EagL~~~V~~~Kg-cfiGqEal~r~~~~~~~~rrLv~l~~~~~--~~--~g~~I~~~g~~VG~vtS~~~s 372 (425)
.|++++++|+|+||+|+|+|+|+ ||+|||+++|++. .+++|||++|+++++ +. .+++|+.+|+.||+|||++||
T Consensus 248 ~D~~~~~~P~EagL~~~v~~~k~~~FiGkeal~r~~~-~g~~rrlvgl~~~~~~~~~~~~~~~V~~~g~~VG~vTS~~~s 326 (368)
T PRK12486 248 NDMTRDNTPHECGLGRFCNTQTDIGCIGKDALLRVAK-EGPQKQIRGIKIGGERIPPCDRAWPLLAGDNRVGQVTSAAYS 326 (368)
T ss_pred ccCCCCCChHHCCCceEEcCCCCCCCcCHHHHHHHHh-cCCCeEEEEEEECCCCCCCcCCceEEeeCCeEEEEEeccCcC
Confidence 99999999999999999999997 9999999999974 678899999999852 33 236799999999999999999
Q ss_pred CCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCC
Q 014411 373 RKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFL 411 (425)
Q Consensus 373 ~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~ 411 (425)
|+++++||||||+.+++.+|++|++ |++++|+|+..||+
T Consensus 327 p~l~~~Iala~v~~~~~~~g~~l~v~~~~~~~~a~v~~~Pf~ 368 (368)
T PRK12486 327 PDFQTNVAIGMVRMTHWDPGTGLEVETPDGMRPATVREGFWI 368 (368)
T ss_pred cccCceEEEEEEChhhcCCCCEEEEEECCceEEEEEeCCCCC
Confidence 9999999999999988889999986 78899999999996
No 6
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=100.00 E-value=2e-73 Score=574.61 Aligned_cols=346 Identities=25% Similarity=0.424 Sum_probs=321.4
Q ss_pred CCCCCCCCCcccHHHHHHCCCeEec-CC--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCC
Q 014411 59 FDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (425)
Q Consensus 59 ~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~ 135 (425)
+|+|| ||++|.++||+|++ +| +|.+|+++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++||||.
T Consensus 2 ~r~s~------l~~~~~~~ga~f~~~~g~~~p~~~~~~~~E~~a~r~~~~l~dls~~~~i~v~G~Da~~fLq~~~t~dv~ 75 (359)
T PRK00389 2 LKRTP------LYDLHVALGAKMVDFGGWEMPVQYGSIIEEHHAVRTDAGLFDVSHMGEVDVTGPDALAFLQYLLANDVS 75 (359)
T ss_pred CcCCc------cHHHHHHcCCEEEeECCeecchhccCHHHHHHHHHhCceEEECCCcEEEEEECCCHHHHHhhhcccccc
Confidence 45666 99999999999999 67 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeeeeCCCCcEEEEEEEEEe-CCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHH
Q 014411 136 ILREGQGCDTVFVTPTARTIDIAHAWIM-KNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (425)
Q Consensus 136 ~l~~G~~~~t~~Ln~~G~i~d~~iv~~~-~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~ 214 (425)
++++|+++|+++||++|+|++++++++. +|+|+|+++++..+.+++||++|+.+ .+|+|+|++++++++.|+||+|++
T Consensus 76 ~l~~g~~~~~~~l~~~G~i~~d~~v~r~~~~~~ll~~~~~~~~~~~~~L~~~~~~-~~V~i~d~~~~~~~l~l~GP~a~~ 154 (359)
T PRK00389 76 KLKPGKAQYTCMLNEDGGVIDDLIVYKLSEDEYLLVVNAANREKDLAWIKSHAAG-FGVEVTDRSDDLAMIAVQGPKARE 154 (359)
T ss_pred cCCCCcEEEeEEECCCCCEEEeEEEEEecCCEEEEEECcccHHHHHHHHHhhCcc-CCEEEEECCCCEEEEEEECccHHH
Confidence 9999999999999999999987777754 88999999999999999999999765 489999999999999999999999
Q ss_pred HHHhcccCCCCCC-CCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCCCCCCCHHHHHHHHHHcCC
Q 014411 215 VMRDLNLGDLVGE-AYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGR 293 (425)
Q Consensus 215 vl~~l~~~dl~~~-p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG~~~~G~~a~~~lRiE~G~ 293 (425)
+|++++..+++++ ||..+....+++.++++.|.+++||+||||+++.+++..+|+.|+++|..++|..+|+.+|||+|+
T Consensus 155 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~L~~ag~~~~g~~a~~~lrie~G~ 234 (359)
T PRK00389 155 KLQKLTDADLSELKPFFGAQGAEVGGGDVLVARTGYTGEDGFEIYLPAEDAEALWDALLEAGVKPCGLGARDTLRLEAGM 234 (359)
T ss_pred HHHHhcccchhhccccceeeEEEECCeEEEEEeceecCCCeEEEEEchHHHHHHHHHHHHcCCeecchhHHhHHHHhcCC
Confidence 9999988888877 788888888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccccccC-CCCcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceeeCCeeeeEEEEee
Q 014411 294 PAPGKELTNEFNVLEAGLWNSISLD-KGCYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPIIVDGKKVGKLTSYT 370 (425)
Q Consensus 294 ~~~g~dl~~~~~P~EagL~~~V~~~-KgcfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~~g~~VG~vtS~~ 370 (425)
|.|+.|++++++|+|+||+++|+|+ ||||+|||+++|+++ .|.||||++|.++. .+..|++|+.+|+.||.|||++
T Consensus 235 p~~~~d~~~~~~P~e~gl~~~v~~~~Kgcy~GqE~var~~~-~g~krrlv~l~~~~~~~~~~g~~v~~~g~~vG~vts~~ 313 (359)
T PRK00389 235 PLYGQDMDETITPLEAGLGWTVKLEEKRDFIGREALEAQKE-AGVERKLVGLELEERGIPRHGYPVLADGEEIGEVTSGT 313 (359)
T ss_pred CccCccCCCCCChHHcCcccEecCCCCCCCcCHHHHHHHHh-cCCCeEEEEEEECCCcCCCCCCEEeeCCcEEEEEeccC
Confidence 9999999999999999999999999 999999999999996 55699999999963 4567999999999999999999
Q ss_pred eCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCC
Q 014411 371 LGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQS 415 (425)
Q Consensus 371 ~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~ 415 (425)
|||.++++||||+|++++ |+.+++ |++++|+|+..||+++++
T Consensus 314 ~s~~~~~~iala~l~~~~---g~~~~v~~~~~~~~a~v~~~p~~~~~~ 358 (359)
T PRK00389 314 FSPTLGKSIALAYVPAGV---GDEVEVEIRGKQVPAKVVKPPFVRRGK 358 (359)
T ss_pred cccccCceEEEEEecCCC---CCEEEEEECCeEEEEEEecCCCcCCCC
Confidence 999999999999999975 666665 667999999999999764
No 7
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=100.00 E-value=4e-73 Score=572.69 Aligned_cols=340 Identities=22% Similarity=0.351 Sum_probs=314.5
Q ss_pred cHHHHHHCCCeEec-CC--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEee
Q 014411 70 LLETVKSEGAKISG-EG--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTV 146 (425)
Q Consensus 70 l~~~~~~~Ga~f~~-~G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~ 146 (425)
||++|++.||+|.+ +| +|.+|+++.+||+|+|++|+++|+|++++|+|+|+||.+|||+|+||||..+++|++.|++
T Consensus 6 l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~~l~dls~~~~i~vsG~Da~~fLq~~~t~di~~l~~g~~~~~~ 85 (361)
T TIGR00528 6 LYDLHTECGGKMVDFGGWEMPVQYGSQIDEHHAVRTDAGLFDVSHMGIVDLSGSRSLEFLQRLLPNDVAALTPGKAQYSV 85 (361)
T ss_pred chHHHHHCCCEEEEECCchhhhccCChHHHHHHHHhhCcEEECCCcEEEEEECCCHHHHHhHhcccccccCCCCCEEEEE
Confidence 99999999999999 66 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCC
Q 014411 147 FVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV 225 (425)
Q Consensus 147 ~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~ 225 (425)
+||+||+|++++++++ .+|+|+|+++++..+.+++||++| +.. +|+|+|+++++++|+|+||+|+++|+++...+++
T Consensus 86 ~l~~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~-~~~-~v~i~~~t~~~~~l~l~GP~a~~~l~~l~~~~~~ 163 (361)
T TIGR00528 86 LLNPQGGVVDDLIIYYFGEDRFRLVVNAATREKDLSWITEH-AEP-FGIEDTQSDDISLLAVQGPKAATILNPLQDQAVE 163 (361)
T ss_pred EECCCCeEEEEEEEEEecCCEEEEEECCccHHHHHHHHHHh-CcC-CcEEEECcCCEEEEEeECcCHHHHHHHhcccchh
Confidence 9999999998777765 578999999999999999999999 443 7999999999999999999999999999877777
Q ss_pred CC-CCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhC-CCCCCCHHHHHHHHHHcCCCCCCCCCCCC
Q 014411 226 GE-AYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRIIKGRPAPGKELTNE 303 (425)
Q Consensus 226 ~~-p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~a~~~lRiE~G~~~~g~dl~~~ 303 (425)
+. ||...+...+++.++.+.|.+|+||+||||++|++++.++|++|+++ |..++|..+|+++|||+|+|.|+.|++++
T Consensus 164 ~~~~~~~~~~~~~~g~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~l~~~gg~~~~g~~a~~~lRie~G~p~~~~d~~~~ 243 (361)
T TIGR00528 164 GLKPFFFVQEADFSGRKAFIARTGYTGEDGYEIALPNEKAADFWRALVEAYGVKPCGLGARDTLRLEAGMNLYGQELDET 243 (361)
T ss_pred hcccccceeEEEECCceEEEEEcceeCCCeEEEEecHHHHHHHHHHHHhcCCcEEcchhhhhhhHhhcCCCccCccCCCC
Confidence 64 46666688899999999999999999999999999999999999998 67899999999999999999999999999
Q ss_pred CCccccccccccccC--CCCcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceee-CC-eeeeEEEEeeeCCCCCC
Q 014411 304 FNVLEAGLWNSISLD--KGCYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPIIV-DG-KKVGKLTSYTLGRKESD 377 (425)
Q Consensus 304 ~~P~EagL~~~V~~~--KgcfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~-~g-~~VG~vtS~~~s~~~~~ 377 (425)
++|+|+||+++|+++ ||||+|||+++|+++ .|.+||++++.+++ ++..|++|+. +| +.||.|||++|||.+++
T Consensus 244 ~~P~E~gl~~~v~~~fkKgcy~GqE~lar~~~-~G~~krlv~l~~~~~~~~~~g~~v~~~~g~~~vG~vtS~~~s~~~g~ 322 (361)
T TIGR00528 244 ITPLEAGLGWTIAWEPAKRDFIGRAVLEEQKE-NGTEKKLVGLEMLEKGIARNGYPVFFTNGNQHVGIVTSGTFSPTLGK 322 (361)
T ss_pred CChHHCCcccEEecCCCCCCCcCHHHHHhHHh-cCCCeEEEEEEECCCcCCCCCCEEEeCCCCeeEEEEeecCcchhcCc
Confidence 999999999999885 899999999999997 45566699998864 4677999987 76 99999999999999999
Q ss_pred eEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCC
Q 014411 378 HFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLA 412 (425)
Q Consensus 378 ~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~ 412 (425)
+||||||+.+++.+|++|++ |++++|+|+..||++
T Consensus 323 ~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~p~~~ 360 (361)
T TIGR00528 323 NIGLAYVPSETEKIGTTLIVQIRNKEYPIKVVKPPFVR 360 (361)
T ss_pred eEEEEEEChhhcCCCCEEEEEECCeEEEEEEecCCCcC
Confidence 99999999999999999986 788999999999985
No 8
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=6.5e-72 Score=625.53 Aligned_cols=356 Identities=20% Similarity=0.265 Sum_probs=327.0
Q ss_pred CCCCCCCCCCcccHHHHHHCCCeEecC-C--cccccC--------ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHH
Q 014411 58 PFDLSPPPIDHDLLETVKSEGAKISGE-G--IVETFG--------NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFL 126 (425)
Q Consensus 58 ~~~~~p~~~~~~l~~~~~~~Ga~f~~~-G--~p~~f~--------~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fL 126 (425)
|+|+|| ||++|+++||+|+++ | +|.+|+ ...+||+|+|++|+|+|+|++++|+|+|+||.+||
T Consensus 595 ~~r~tp------l~~~~~~~GA~~~~~~gw~~p~~y~~~~~~~~~~~~~E~~avR~~vgl~D~S~~g~i~V~G~DA~~fL 668 (985)
T TIGR01372 595 PARKTP------LHSWHLAHGAVFEDVGQWKRPWYYPRRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQGPDAAEFL 668 (985)
T ss_pred ccccCc------cHHHHHHcCCEeeeeCCccchhhhcCCCCcccchHHHHHHHHHhceEEEECCCcEEEEEECcCHHHHH
Confidence 556666 999999999999994 5 999996 34899999999999999999999999999999999
Q ss_pred hhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEE-EeCCeEEEEECCCChHHHHHHHHhccc---CCCCeEEEEecCcE
Q 014411 127 HNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVF---FADKVEIQDITKQT 202 (425)
Q Consensus 127 q~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~-~~~d~~~l~~~~~~~~~~~~~L~~~~~---~~~~V~i~d~t~~~ 202 (425)
|+++||||.++++|+++|++|||++|+|+||++++ +++|+|+|+++++..+.+++||++++. +..+|+|+|+|+++
T Consensus 669 ~~~~tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r~~ed~~~l~~~~~~~~~~~~~L~~~~~~~~~~~~V~i~d~t~~~ 748 (985)
T TIGR01372 669 NRVYTNAFTKLKVGKARYGLMLREDGMVFDDGVTSRLAEDRFLMTTTTGGAARVLQHLEEWLQTEWPELDVYLTSVTDQW 748 (985)
T ss_pred hhhcccccCcCCCCCEEEeEEECCCCeEEEeEEEEEEeCCEEEEEeCCcCHHHHHHHHHHhhhhccCCCCEEEEECCCCE
Confidence 99999999999999999999999999999886665 568999999999999999999999863 12379999999999
Q ss_pred EEEEEeCCChHHHHHhccc-CCCC--CCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCC----
Q 014411 203 CLFVVVGPKSNQVMRDLNL-GDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG---- 275 (425)
Q Consensus 203 ~~l~l~GP~a~~vl~~l~~-~dl~--~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG---- 275 (425)
++|+|+||+|+++|++++. .|++ ++||++++.+.+++.++++.|++|+||+||||++|.+++.+||++|+++|
T Consensus 749 a~i~l~GP~s~~vl~~l~~~~dl~~~~~~~~~~~~~~~~g~~~~i~R~~~tGE~GyEi~~p~~~~~~l~~~L~~aG~~~g 828 (985)
T TIGR01372 749 ATLAVSGPKARDLLAELVDGLDLSNEAFPFMAIKEGTLAGVPARLFRISFSGELAFEVNVPADYGEAVWEALMEAGQPFG 828 (985)
T ss_pred EEEEEECHhHHHHHHHhcCcccCccccCCCceeEEEEECCcEEEEEeccccCCceEEEEecHHHHHHHHHHHHhcchhcC
Confidence 9999999999999999986 5774 49999999999999999999999999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccccccccCCCCcccHHHHHHHHhhCCCceEEEEEEEcC---CCCC
Q 014411 276 AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSA---PAEP 352 (425)
Q Consensus 276 ~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~KgcfiGqEal~r~~~~~~~~rrLv~l~~~~---~~~~ 352 (425)
..|+|.+||++||||+|++.|++|++++++|+|+||+|+|||+||||+|||+++|+++++++|||||+|.+++ +++.
T Consensus 829 ~~p~G~~a~~~lRiE~G~~~~g~d~~~~~tP~E~gl~~~V~~~Kg~fiGqeal~r~~~~~~~krrlvgl~~~~~~~~~~~ 908 (985)
T TIGR01372 829 ITPYGTETMHVLRAEKGFIIVGQDTDGTVTPADLGMGWMVSKKKPDFVGRRMLAREDLVAEDRKQLVGLLPLDPQRRLPE 908 (985)
T ss_pred ceEcchhhhhhhhhhcCccccCcccCCCCCHHHCCCcccccCCCCCcCCHHHHHhHHhcCCCceEEEEEEEeCCCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999988788999999998764 4567
Q ss_pred CCceeeCC------eeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCCC
Q 014411 353 GSPIIVDG------KKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPLL 419 (425)
Q Consensus 353 g~~I~~~g------~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~~ 419 (425)
|++++.++ +.||+|||++|||+++++||||||+.+++.+|++|++ |++++|+|+..||++|+..+.+
T Consensus 909 g~~v~~~~~~~~~~~~vG~VTS~~~sp~lg~~iaLa~v~~~~~~~G~~v~v~~~g~~~~a~v~~~pf~dp~~~r~~ 984 (985)
T TIGR01372 909 GAHIVADDAEAIPMNMQGHVTSSYFSPALGRTIALALVKGGRARHGETVYVPDLGRFIAVEICDPVFFDPEGTRLH 984 (985)
T ss_pred CCEEEECCCcccCCCcEEEEeeeccchhcCCeEEEEEECccccCCCCEEEEEECCEEEEEEEeccCCCCCCCCCcC
Confidence 88887543 7899999999999999999999999999999999886 8889999999999999987654
No 9
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-66 Score=491.18 Aligned_cols=349 Identities=30% Similarity=0.402 Sum_probs=317.8
Q ss_pred ccHHHHHHCCCeEecC-C--cccccC--ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceE
Q 014411 69 DLLETVKSEGAKISGE-G--IVETFG--NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGC 143 (425)
Q Consensus 69 ~l~~~~~~~Ga~f~~~-G--~p~~f~--~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~ 143 (425)
||||.|.++|+.+..+ | +|..|. +..+++..+|++++|||+|||..++|+|+|+.+||+.+++.|+..|++|+.+
T Consensus 29 ~l~d~H~~~ggk~V~fag~smpvqy~d~s~~dshl~tr~n~~lfDVSHmlq~~v~G~d~v~fLes~ttad~~~L~~g~Gt 108 (401)
T KOG2770|consen 29 PLYDFHVKLGGKMVPFAGYSMPVQYKDQSIIDSHLHTRENVSLFDVSHMLQSRVSGKDRVAFLESLTTADFEGLPEGSGT 108 (401)
T ss_pred CChhhHhhcCCEEecccccccceeeccccchhhhhhhhhcceEEeehhheeeeecccchhHHhhhccccchhccCCCCce
Confidence 3999999999999996 4 999995 5689999999999999999999999999999999999999999999999999
Q ss_pred EeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCCCC-----eEEEEecCcEEEEEEeCCChHHHHH
Q 014411 144 DTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFADK-----VEIQDITKQTCLFVVVGPKSNQVMR 217 (425)
Q Consensus 144 ~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~-----V~i~d~t~~~~~l~l~GP~a~~vl~ 217 (425)
++.|.|++|+|+||+++++ .++++|++++++.++.+...++.+. +.++ |+++-+. ..+.+++|||.+.++|+
T Consensus 109 lsvFtne~ggiiDd~ii~k~~~~~ly~VsnAgC~ekd~~~~k~~~-~a~ks~gkDv~~~~~~-~r~l~A~Qgp~~akvlq 186 (401)
T KOG2770|consen 109 LSVFTNETGGIIDDLIITKVDENELYIVSNAGCQEKDEALLKDHF-FAWKSKGKDVSWETLD-GRSLLALQGPEAAKVLQ 186 (401)
T ss_pred eEEEEcCCCceeeeeEEEeecCCEEEEEeccchHHHHHHHHHHHH-HhhhhccceeeEEEec-ccchhhhcChHHHHHHH
Confidence 9999999999999988885 5678889999999999999888764 3333 5554444 45789999999999999
Q ss_pred hccc--CCCCCCCCceeeEEEECCee-EEEeecCccCCCeEEEEeccccHHHHHHHHHhC-CCCCCCHHHHHHHHHHcCC
Q 014411 218 DLNL--GDLVGEAYGTHRHYSVNGMP-ITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRIIKGR 293 (425)
Q Consensus 218 ~l~~--~dl~~~p~~~~~~~~i~g~~-v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~a~~~lRiE~G~ 293 (425)
++.. .||+.+||+.+....+.|.+ |++.|.+|+||+||||-++++.|..+|++|++. +++|.|+.|||+||||+|.
T Consensus 187 ~l~~k~~DL~~l~fg~~~~~~~~G~~~~~vtr~gytgEDGfeisv~~~~Av~la~~LLa~~~vkp~Gl~ArDsLRLeaGK 266 (401)
T KOG2770|consen 187 KLLSKLGDLSKLPFGQSQVYDFKGGPGCRVTRGGYTGEDGFEISVPPEGAVDLAETLLANPVVKPAGLGARDSLRLEAGL 266 (401)
T ss_pred HhhccccchhcccccceEEEEecCCCceEEeccccccCCceEEecCCchhHHHHHHHhhCCceeecccchhhhhhhhcCC
Confidence 9987 89999999999999999887 999999999999999999999999999999997 6799999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccc-ccCCC--CcccHHHHHHHHhhCCCceEEEEEEEcC-C-CCCCCceeeC-CeeeeEEE
Q 014411 294 PAPGKELTNEFNVLEAGLWNSI-SLDKG--CYKGQETISRLITYDGLKQRLWGICLSA-P-AEPGSPIIVD-GKKVGKLT 367 (425)
Q Consensus 294 ~~~g~dl~~~~~P~EagL~~~V-~~~Kg--cfiGqEal~r~~~~~~~~rrLv~l~~~~-~-~~~g~~I~~~-g~~VG~vt 367 (425)
+.||.|++++++|.|+||.|.| +..++ ||.|+|.++++-..++++||+|+|.+.+ | ++.|.+|+.+ |+.||.||
T Consensus 267 OGyg~did~~~tpvEa~L~W~i~krrR~~~~f~Ga~~I~~qLk~~~~~~RrvGl~~~~~p~ar~gs~I~~~~g~kVG~vT 346 (401)
T KOG2770|consen 267 CLYGSDIDEETTPVEAGLSWVIGKRRRGTYDFPGAEVILKQLKDGGISRRRVGLNLSAKPPARSGSAIFVDDGTKVGQVT 346 (401)
T ss_pred cccCcccccccChhhheeeeeeeeccccccCCCcHHHHHHHhhcCCcceEEEeeeccCCCCCCCCCeeEcCCCceEeeEc
Confidence 9999999999999999997765 55667 9999999999976666899999998876 5 6889999977 89999999
Q ss_pred EeeeCCCCCCeEEEEEEeCCCCCCCCEEEeC---CeEeEEEEeCCCCCCCCCCCC
Q 014411 368 SYTLGRKESDHFGLGYIKRKDALGGDTVTVG---DNIVGTVVEVPFLARQSPPLL 419 (425)
Q Consensus 368 S~~~s~~~~~~iala~v~~~~a~~g~~l~~g---~~~~a~v~~~Pf~~~~~~~~~ 419 (425)
|++.||+++++||||||+..+...|+++.++ +.++++|.++||++..+++++
T Consensus 347 Sg~~sptl~kniamgYV~k~~~~~Gtkv~v~vr~k~~~~~VskmPfV~t~yy~~~ 401 (401)
T KOG2770|consen 347 SGCPSPTLGKNIAMGYVKKGYHKIGTKVLVKVRNKLYPAEVSKMPFVPTNYYKSA 401 (401)
T ss_pred cCCCCCCcccceeEEEeeccccCCCCEEEEEecCcccceEEEecccccccCCCCC
Confidence 9999999999999999999999999999974 789999999999999998864
No 10
>PRK09559 putative global regulator; Reviewed
Probab=100.00 E-value=1.8e-50 Score=402.25 Aligned_cols=297 Identities=20% Similarity=0.234 Sum_probs=247.8
Q ss_pred cEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHHHHHH
Q 014411 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEML 183 (425)
Q Consensus 104 vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~~~~L 183 (425)
..++|++++++|+|+|+||.+|||+|+||||.+|++|+++|+++||+||||+++++++..+++|+|+++++..+.+++||
T Consensus 19 ~~l~~L~~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~~~~~~l~~~~~~~~~~~~~L 98 (327)
T PRK09559 19 LTLISLDDWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRRGDGFAWIERRSVRENQLTEL 98 (327)
T ss_pred eEEEcCccceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEeCCeEEEEeChhhhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccC-CCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccc
Q 014411 184 NKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLG-DLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPA 262 (425)
Q Consensus 184 ~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~-dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~ 262 (425)
++|++++ +|+|++ +++++.++++||+|.++++++... +....++. ..+.. .+.|.. ..+.||||+++.+
T Consensus 99 ~ky~~~~-kV~i~~-~~~~~~i~l~Gp~a~~~l~~~~~~~~~~~~~~~-----~~~~~--~~~~~~-~~~~g~ei~~~~~ 168 (327)
T PRK09559 99 KKYAVFS-KVTIAP-DDERVLLGVAGFQARAALANLFSELPDAEKPVV-----QEGAT--TLLWFE-HPAERFLLVTDEA 168 (327)
T ss_pred hhcccce-EEEEEe-CCcEEEEEEECccHHHHHHHhcccCCCcCcceE-----ecCCe--EEEEec-CCCCeEEEEechH
Confidence 9998774 899986 677999999999999999987542 22223322 12221 123322 3578999999999
Q ss_pred cHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccc--cccccCCCCcccHHHHHHHHhhCCCceE
Q 014411 263 AAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW--NSISLDKGCYKGQETISRLITYDGLKQR 340 (425)
Q Consensus 263 ~a~~l~~~L~~aG~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~EagL~--~~V~~~KgcfiGqEal~r~~~~~~~~rr 340 (425)
.+..+|+.|.+. ..+.+...|+.+|||+|+|.++.|++++++|+|+||+ ++|||+||||+|||+++|+++++.+|||
T Consensus 169 ~~~~l~~~L~~~-~~~~~~~~w~~lrIeaG~p~~g~e~~e~~~Pqe~nL~~l~~Vsf~KGCY~GQE~vAR~~~~G~~krr 247 (327)
T PRK09559 169 TANMLTEKLRGE-AQLNNSQQWLALDIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRA 247 (327)
T ss_pred HHHHHHHHhhhc-CccCCHHHHHHHHHHcCCcccccccccccCchhhChhhcCceeecCcccccHHHHHHHHHcCCCcee
Confidence 999999999863 3568888999999999999999999999999999997 6999999999999999999988888999
Q ss_pred EEEEEEcC--CCCCCCcee--e--CCeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEeCCe--EeEEEEeCCCCC
Q 014411 341 LWGICLSA--PAEPGSPII--V--DGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDN--IVGTVVEVPFLA 412 (425)
Q Consensus 341 Lv~l~~~~--~~~~g~~I~--~--~g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~g~~--~~a~v~~~Pf~~ 412 (425)
|+++.+++ .+..|++|. . +++.||.|+|++.++. +...+++.++.+. .++..+.+++. ...++.++||.-
T Consensus 248 l~~l~~~~~~~~~~g~~i~~~~~~~~~~~G~v~s~~~~~~-~~~~~l~v~~~~~-~~~~~l~~~~~~~~~~~~~~lPy~~ 325 (327)
T PRK09559 248 LWWLAGKASRVPEAGEDLELKMGENWRRTGTVLAAVQLDD-GQVWVQVVMNNDL-EADSVFRVRDDAGNTLHIQPLPYSL 325 (327)
T ss_pred EEEEecccccCCCCCCeeEEecCCCCceeEEEEEEEECCC-CCEEEEEEEecCc-CCCceEEEccCCCCeeEecCCCCCC
Confidence 99998873 356789763 2 2589999999988444 5677788888765 45677887531 347788888854
Q ss_pred C
Q 014411 413 R 413 (425)
Q Consensus 413 ~ 413 (425)
+
T Consensus 326 ~ 326 (327)
T PRK09559 326 E 326 (327)
T ss_pred C
Confidence 3
No 11
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=100.00 E-value=5.8e-43 Score=327.18 Aligned_cols=206 Identities=33% Similarity=0.526 Sum_probs=183.6
Q ss_pred EEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHH
Q 014411 106 AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLN 184 (425)
Q Consensus 106 l~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~ 184 (425)
|||+|++++|+|+|+||.+|||+++||||.++++|+++|+++||+||||++++++++ .+++|+|+++++..+.+++||+
T Consensus 1 l~d~s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~ 80 (211)
T PF01571_consen 1 LFDLSHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLK 80 (211)
T ss_dssp EEE-TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHH
T ss_pred CCCCCCcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999997766665 4555999999999999999999
Q ss_pred hcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccH
Q 014411 185 KYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAA 264 (425)
Q Consensus 185 ~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a 264 (425)
+|+++ .+|+|+++++++++++|+||+|.++++++.+.++++++++++... +++ ++++.|.+++|++||||+++.+.+
T Consensus 81 ~~~~~-~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~r~~~~g~~g~~l~~~~~~~ 157 (211)
T PF01571_consen 81 KYILR-SDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSREV-GDG-PVLVARTGRTGELGYELIVPAEEA 157 (211)
T ss_dssp HHHHH-SS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEEE-ETT-EEEEESCBSSSSSEEEEEEEGGGH
T ss_pred Hhccc-cCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccceeee-cCc-eEEEEecccCCCCCEEEEeccchh
Confidence 99876 489999999999999999999999999999777888999999988 888 999999999999999999999999
Q ss_pred HHHHHHHHhCC----CCCCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccccc
Q 014411 265 GSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNS 314 (425)
Q Consensus 265 ~~l~~~L~~aG----~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~EagL~~~ 314 (425)
..+|++|+++| ..++|.++|+++|||+|+|.++.|++++++|+|+||+|+
T Consensus 158 ~~~~~~l~~~g~~~g~~~~g~~~~~~lRie~G~p~~~~d~~~~~~P~E~~l~w~ 211 (211)
T PF01571_consen 158 EALWDALLEAGKDFGVRPAGLEAWEALRIEAGIPLYGQDLDEEFLPQEANLDWA 211 (211)
T ss_dssp HHHHHHHHHHHGGGTEEEEEHHHHHHHHHHTT---TTTSSCTTS-TTTTTGGGG
T ss_pred HHHHHHHHHHHhccCceeccHHHHHHHHHhcCCcccccccCCCCCHHHcCCCcC
Confidence 99999998875 589999999999999999999999999999999999884
No 12
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=100.00 E-value=4.5e-42 Score=335.04 Aligned_cols=288 Identities=25% Similarity=0.286 Sum_probs=233.8
Q ss_pred HhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHH
Q 014411 100 ADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (425)
Q Consensus 100 vr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~ 179 (425)
-.....++++++++.|+|+|+|+.+|||+|+||||..|..|+.+++.+||+||||++++.++..+|.|+|.+.++..+.+
T Consensus 10 ~~~~~~l~~l~~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~~d~~~l~~~~~~~~~~ 89 (305)
T COG0354 10 AETPLTLVLLSDRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRRGDGLYLDTDKSVLEAL 89 (305)
T ss_pred cccccEEEecCCceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEeCCeEEEEcchhhcHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEe
Q 014411 180 TEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLM 259 (425)
Q Consensus 180 ~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~ 259 (425)
++||+||++++ +|+|.+.+ ...+.+.|+++.+.+..... .+|..... .+ .+++-.
T Consensus 90 l~~L~kY~~~s-kv~i~~~~--~~~i~v~~~~~~~~~~~~~~----~~~~~~~~----------------~~--~~~l~~ 144 (305)
T COG0354 90 LKRLKKYALRS-KVTIAPSD--LVLIGVAGEEAAEALAVDFP----ALPKQWRA----------------AG--RFLLDL 144 (305)
T ss_pred HHHHHhceecc-cceEecCC--ceeEEEeeccccchhhcccc----cccccccc----------------cc--cceecc
Confidence 99999999886 89998766 68999999998776655432 12221110 01 122333
Q ss_pred ccccHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccc--cccccCCCCcccHHHHHHHHhhCCC
Q 014411 260 SPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW--NSISLDKGCYKGQETISRLITYDGL 337 (425)
Q Consensus 260 ~~~~a~~l~~~L~~aG~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~EagL~--~~V~~~KgcfiGqEal~r~~~~~~~ 337 (425)
+......+.......+....+..+|+.+||++|+|....+++++++|+|.||+ .+|||+||||+|||.++|++++|..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~w~~lri~~G~p~~~~~~~~~~iPqevnl~~~~gISF~KGCYvGQE~VAR~~~rG~~ 224 (305)
T COG0354 145 PVPRLLQLVPKLALPQALEASLDQWLALRIRAGIPGIDDATSEDFIPQEVNLDALGGISFKKGCYVGQETVARAKYRGTN 224 (305)
T ss_pred chhhhhhhhhhccccccccccHHHHHHHHHHcCCCcccchhccccChhhhCccccCcEeccCcccccHHHhhHHHhcCCC
Confidence 32222333333333344667788999999999999999999999999999984 6899999999999999999999999
Q ss_pred ceEEEEEEEcCC-CCCCCceeeCCee--eeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEeCCeEeEEEEeCCCCCCC
Q 014411 338 KQRLWGICLSAP-AEPGSPIIVDGKK--VGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLARQ 414 (425)
Q Consensus 338 ~rrLv~l~~~~~-~~~g~~I~~~g~~--VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~g~~~~a~v~~~Pf~~~~ 414 (425)
||||+.++++++ +..|++|..+++. +|.|+|..- .+.+|+++++. ....+..++++. ..+.+...||....
T Consensus 225 kRrl~~l~~d~~~p~~g~~i~a~~~~~~~G~v~s~~~----~~~~~l~~l~~-~l~~~~~~~v~~-~~~~~~~~~~~~~~ 298 (305)
T COG0354 225 KRRLVLLALDASLPEAGEEILAGGEEVGLGTVLSAVG----LGPVALIRLKV-VLDNGLAIDVGG-RIANLALPPWVRLP 298 (305)
T ss_pred ceeEEEEEeCCCCCCCCCeeecCCCcceeeeEEeccc----CcchhHHHHHH-hhcccchhhhcc-cccccccccccccc
Confidence 999999999996 8899999999999 999999654 34589999998 555677777766 55666666776666
Q ss_pred CCCC
Q 014411 415 SPPL 418 (425)
Q Consensus 415 ~~~~ 418 (425)
++.+
T Consensus 299 ~~~~ 302 (305)
T COG0354 299 FPYS 302 (305)
T ss_pred cCCc
Confidence 5544
No 13
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription]
Probab=99.97 E-value=1.1e-31 Score=254.38 Aligned_cols=281 Identities=23% Similarity=0.252 Sum_probs=198.5
Q ss_pred cEEEeCCCceEEEEEcchHHHHHhhccccCCCC--------CCCCceEEeeeeCCCCcEEEEEEEEE-----eCCeEEEE
Q 014411 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEI--------LREGQGCDTVFVTPTARTIDIAHAWI-----MKNAVILV 170 (425)
Q Consensus 104 vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~--------l~~G~~~~t~~Ln~~G~i~d~~iv~~-----~~d~~~l~ 170 (425)
-.++-++++..|+|+|+|+.+|||+++||||.. .......|++|||.|||++.|+++|. .+++++|.
T Consensus 30 ~~~~~L~~RsliRv~GpDtvkFLqGL~TNdv~~~~p~~~~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~~~~~~llE 109 (348)
T KOG2929|consen 30 FNLSLLESRSLIRVRGPDTVKFLQGLLTNDVTRHFPGIQGAPITRNGLYAAFLNTQGRLLYDTILYPTPVPVSEPELLLE 109 (348)
T ss_pred ceeeecCCceEEEEeCccHHHHHhhhhcccccccCcccccCCCCCchhhhhhhccCccEEEEEEEecCCCCCCCCceEEE
Confidence 357788999999999999999999999999996 11245689999999999998888884 23589999
Q ss_pred ECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeC-CChHHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCc
Q 014411 171 VSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVG-PKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNV 249 (425)
Q Consensus 171 ~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~G-P~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~ 249 (425)
+..+...++..+|.+|.++. +|+|+.+.+++..+.+.- |+... |...++ -....+...|...
T Consensus 110 ~d~~~~~~~~khl~~yrLr~-kv~v~~id~el~tw~v~~~p~~~~--------d~~~~~--------~~~~~~~~~rdpr 172 (348)
T KOG2929|consen 110 CDGSVVGDFLKHLQKYRLRR-KVEVEKIDHELKTWKVEVLPKNSI--------DANVFE--------ENVLNVLYNRDPR 172 (348)
T ss_pred ecCccchHHHHHHHHhhhhh-cceeeeCchhhceeeeeecccccc--------chhhcc--------hhhhhhhhccCCc
Confidence 99999999999999998875 899998887777766642 22110 111011 0111233334433
Q ss_pred cCCCeEEEEeccccHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCCCCCCC-CCCccccccc--cccccCCCCcccHH
Q 014411 250 ISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTN-EFNVLEAGLW--NSISLDKGCYKGQE 326 (425)
Q Consensus 250 ~ge~G~el~~~~~~a~~l~~~L~~aG~~~~G~~a~~~lRiE~G~~~~g~dl~~-~~~P~EagL~--~~V~~~KgcfiGqE 326 (425)
....||++.- ...+. .+.+ +...-....+..+|.++|++.-.+|+.+ ...|+|+|++ ++|||+||||+|||
T Consensus 173 ~s~~~~~~l~-~~f~~----~~~~-~~~~~d~~~Y~~~Ry~~Gv~EG~~el~pg~~lPLE~N~d~lngISf~KGCYVGQE 246 (348)
T KOG2929|consen 173 FSGMGWRLLP-QDFAV----PTSE-QVSEGDESDYRLLRYQQGVAEGSQELIPGTLLPLESNFDFLNGISFDKGCYVGQE 246 (348)
T ss_pred cccccccccc-eeecC----cccc-cccccchhHHHHHHHHcCcccchhhcCcccccceeccccccccccccCcceechh
Confidence 3344555431 11111 0111 1122333448999999999999999984 6799999984 68999999999999
Q ss_pred HHHHHHhhCCCceEEEEEEEc----CCCC-----CCCce-eeCCeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCC-EE
Q 014411 327 TISRLITYDGLKQRLWGICLS----APAE-----PGSPI-IVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGD-TV 395 (425)
Q Consensus 327 al~r~~~~~~~~rrLv~l~~~----~~~~-----~g~~I-~~~g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~-~l 395 (425)
..+|.|+.|.+||||+.|.++ ++.. ....| ...|++||+|.++.- ..|||+++.+...... ++
T Consensus 247 LTARThhtGViRKRl~P~r~~~~e~~p~~~~~~~~~~~v~~~~g~kvG~~~~~~g------~~glgllr~e~~~~~~~~l 320 (348)
T KOG2929|consen 247 LTARTHHTGVIRKRLFPFRLDLAENEPLLVGFTNAPPEVEKKKGRKVGRVISGEG------LRGLGLLRLEKFKAQFYKL 320 (348)
T ss_pred heehhhhcceeeeeeeeEEecccCCCccccCCCCCccceecccCceeeeeeccCc------ceeeeeeehhhhhccchhh
Confidence 999999988899999999994 3322 22333 358999999999754 7899999988765432 33
Q ss_pred Ee-CCeEeEEEEeCCCCCCC
Q 014411 396 TV-GDNIVGTVVEVPFLARQ 414 (425)
Q Consensus 396 ~~-g~~~~a~v~~~Pf~~~~ 414 (425)
.+ |+.+..+.. .|++-++
T Consensus 321 ~~~g~~i~i~~~-~p~W~p~ 339 (348)
T KOG2929|consen 321 TTKGENIKIKPQ-KPEWWPD 339 (348)
T ss_pred hccCccceeccC-CCccccc
Confidence 33 555554443 3444443
No 14
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=99.82 E-value=1.2e-20 Score=144.45 Aligned_cols=63 Identities=41% Similarity=0.642 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCcccccccc--ccccCCCCcccHHHHHHHHhhCCCceEEEEEE
Q 014411 283 AWEKLRIIKGRPAPGKELTNEFNVLEAGLWN--SISLDKGCYKGQETISRLITYDGLKQRLWGIC 345 (425)
Q Consensus 283 a~~~lRiE~G~~~~g~dl~~~~~P~EagL~~--~V~~~KgcfiGqEal~r~~~~~~~~rrLv~l~ 345 (425)
+|++||||+|||.||.|++++++|+|+||++ +|+|+||||+|||+++|+++++.++|+|+.|+
T Consensus 2 ~~~~lRlE~g~~~~g~el~~~~~P~E~gl~~~~~v~~~Kg~yiGqe~l~r~~~~g~~~~~lv~l~ 66 (67)
T TIGR03317 2 AWELLRIAAGIPEGGAETSGEFLPQELNLDALGGVSFKKGCYVGQEVVARMHYRGKVKRRLVRLR 66 (67)
T ss_pred HHHHHHHHcCCCccccccCCCCCHhHcCCCccCcEeCCCCCccCHHHHHHHHHcCCCceeEEEee
Confidence 6899999999999999999999999999998 99999999999999999987555899999885
No 15
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=99.82 E-value=1.5e-19 Score=148.00 Aligned_cols=89 Identities=33% Similarity=0.537 Sum_probs=77.4
Q ss_pred CCcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceee-CCeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEE
Q 014411 320 GCYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPIIV-DGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVT 396 (425)
Q Consensus 320 gcfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~-~g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~ 396 (425)
|||+|||+++|++..+..||+|++|.++. ++..|++|+. +|+.||+|||++|||+++++||||||+.+++.+|++|+
T Consensus 1 gdfiG~eal~r~~~~g~~rr~lv~l~~~~~~~~~~g~~v~~~~g~~vG~vTS~~~sp~~~~~Iala~v~~~~~~~g~~l~ 80 (95)
T PF08669_consen 1 GDFIGQEALARQKARGVKRRRLVGLTLDGDAPPRGGEPVYDEDGKPVGRVTSGAYSPTLGKNIALAYVDREYAEPGTELE 80 (95)
T ss_dssp S-STTHHHHHHHHHHTTS-EEEEEEEESSSS--STTCEEEETTTEEEEEEEEEEEETTTTEEEEEEEEEGGGGSTTSEEE
T ss_pred CCcCCHHHHHHHHhcCCCceEEEEEEECCccCCCCCCEEEECCCcEEeEEEEEeECCCCCceEEEEEECHHHcCCCCEEE
Confidence 69999999999997655569999999985 5788999999 99999999999999999999999999999999999888
Q ss_pred e---CCeEeEEEEeC
Q 014411 397 V---GDNIVGTVVEV 408 (425)
Q Consensus 397 ~---g~~~~a~v~~~ 408 (425)
+ |++++|+|+++
T Consensus 81 v~~~g~~~~a~v~~~ 95 (95)
T PF08669_consen 81 VEIRGKRVPATVVKM 95 (95)
T ss_dssp EEETTEEEEEEEE-S
T ss_pred EEECCEEEEEEEeCc
Confidence 6 78899999863
No 16
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.82 E-value=3.3e-19 Score=158.60 Aligned_cols=115 Identities=14% Similarity=0.222 Sum_probs=105.6
Q ss_pred EEEEEeCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCC--CCCceeeEE
Q 014411 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHY 235 (425)
Q Consensus 158 ~iv~~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~--~p~~~~~~~ 235 (425)
+++++++|+|+|+++.+..+.+++||++++.. .+|.++|+|+++++|.||||+|+++|++++..|+++ ||+++++.+
T Consensus 35 ~v~rlg~d~~llv~~~~~~~~~~~~l~~~~~~-~~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~ 113 (152)
T TIGR01375 35 SVLWLGPDEWLIIAPQPEGAVLMAALAAALGP-EPHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRT 113 (152)
T ss_pred EEEEEcCCEEEEEcCccchHHHHHHHHHHhCC-CccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEE
Confidence 47778999999999999999999999998533 259999999999999999999999999999888987 999999999
Q ss_pred EECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCCC
Q 014411 236 SVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA 276 (425)
Q Consensus 236 ~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG~ 276 (425)
.+++.+|++.| +||+||||+++.+++.+||+.|+++|.
T Consensus 114 ~i~~~~v~i~R---tGE~GfEi~v~~s~a~~lw~~L~~ag~ 151 (152)
T TIGR01375 114 IFGKIAAVIWR---TGEDTFEIIVRRSFAESLWHWLVDASE 151 (152)
T ss_pred EEcCeEEEEEE---cCCCeEEEEEEhhHHHHHHHHHHHHhc
Confidence 99999999999 499999999999999999999999873
No 17
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=99.07 E-value=2.2e-09 Score=94.87 Aligned_cols=110 Identities=19% Similarity=0.268 Sum_probs=85.5
Q ss_pred EEEEEeCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCC--CCCCceeeEE
Q 014411 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHY 235 (425)
Q Consensus 158 ~iv~~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~--~~p~~~~~~~ 235 (425)
.++|+++|+|+|+.+. .....+.|... +.. ...+.|+++.++.|.|.||+++++|++++.-|+. .||.+.+..+
T Consensus 33 ~~~wlgPdewLl~~~~--~~~~~~~l~~~-l~~-~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T 108 (147)
T PF04268_consen 33 AVLWLGPDEWLLLSPD--GEDLAAALAAA-LGG-HASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAART 108 (147)
T ss_dssp EEEEEETTEEEEEESS---TCHHHHHHHH-HTT-SSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEE
T ss_pred eEEEEcCCEEEEEecC--cchHHHHHHHh-hCC-CeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEE
Confidence 5889999999988832 23345556554 332 5688999999999999999999999999999987 4999999999
Q ss_pred EECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhC
Q 014411 236 SVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ 274 (425)
Q Consensus 236 ~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~a 274 (425)
.+++..|.+.| .|+.+|+|+|+.+.+.++|+.|.++
T Consensus 109 ~~~~i~v~l~r---~~~~~f~l~v~rSfA~~l~~~L~~A 144 (147)
T PF04268_consen 109 SFAHISVILWR---DGEDGFRLLVRRSFAEYLWHWLEDA 144 (147)
T ss_dssp EETTEEEEEEE---EETTEEEEEEBGGGHHHHHHHHHHH
T ss_pred eecCeEEEEEE---cCCCEEEEEEECchHHHHHHHHHHH
Confidence 99999999998 5788999999999999999999864
No 18
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=98.83 E-value=1.3e-07 Score=85.03 Aligned_cols=150 Identities=12% Similarity=0.118 Sum_probs=110.8
Q ss_pred EEEeCCCceEEEEEcchHHH----HHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHHH
Q 014411 105 AAVDLSHFGRIRVSGDDRIQ----FLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSIT 180 (425)
Q Consensus 105 gl~DlS~~~~i~V~G~dA~~----fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~~ 180 (425)
.+-.......+.+.++++.. +|...+...++. ... .| +..+.++++|+|+++..........
T Consensus 28 ~l~~~p~~~~vl~~~~~~~~al~aal~~~~P~~~~~----~a~-------sg---e~~v~wlgPDeW~Vi~~~~~~~~~~ 93 (189)
T COG4583 28 VLRERPEGRIVLVAAEAADPALSAALGRVLPAEPKG----VAS-------SG---ERSVLWLGPDEWLVISEGGEDAAMK 93 (189)
T ss_pred eeccCCCCceEEeecCccchhHHHHHhhhcCCCCCC----ccc-------cC---ceEEEEeCCCeeEEEcCCCccHHHH
Confidence 34455666666777765544 445444322221 111 12 2357789999999998876554433
Q ss_pred HHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCC--CCCCceeeEEEECCeeEEEeecCccCCCeEEEE
Q 014411 181 EMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLL 258 (425)
Q Consensus 181 ~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~--~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~ 258 (425)
.-+... .. .-...|++..+..|.|.||+|+++|.+.+..||+ .||-+.+..+.+++..+.+.| +|++-|||+
T Consensus 94 aa~A~~-~~--~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~~~~vvl~r---~g~d~fei~ 167 (189)
T COG4583 94 AAFASL-EA--LASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIFGKAAVVLTR---TGADTFEIE 167 (189)
T ss_pred HHHhhc-cc--cceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeeecceEEEEEe---ecCCeEEEE
Confidence 333222 12 2378899999999999999999999999999985 499999999999999999999 899999999
Q ss_pred eccccHHHHHHHHHhC
Q 014411 259 MSPAAAGSVWETLLSQ 274 (425)
Q Consensus 259 ~~~~~a~~l~~~L~~a 274 (425)
|-..++.++|..|.++
T Consensus 168 V~RSFAe~~w~~L~~a 183 (189)
T COG4583 168 VWRSFAESLWHLLLDA 183 (189)
T ss_pred eehhhHHHHHHHHHHh
Confidence 9999999999999875
No 19
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=97.36 E-value=0.0016 Score=57.64 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=61.7
Q ss_pred HHhhCcEEEeCCC-ceEEEEEcchHHHHHhhccccCCC--CCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCC
Q 014411 99 AADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFE--ILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLT 175 (425)
Q Consensus 99 avr~~vgl~DlS~-~~~i~V~G~dA~~fLq~l~tndi~--~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~ 175 (425)
++-....+.|+|+ +..|+|+|+.+.+.|...|.-|+. .+++|++..|.|- ++ .-++.+..++.|.|++..+.
T Consensus 59 ~l~~~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~~----~i-~v~l~r~~~~~f~l~v~rSf 133 (147)
T PF04268_consen 59 ALGGHASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSFA----HI-SVILWRDGEDGFRLLVRRSF 133 (147)
T ss_dssp HHTTSSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEET----TE-EEEEEEEETTEEEEEEBGGG
T ss_pred hhCCCeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEeec----Ce-EEEEEEcCCCEEEEEEECch
Confidence 4455789999997 779999999999999999999996 6789999999873 44 22344567889999999999
Q ss_pred hHHHHHHHHh
Q 014411 176 CSSITEMLNK 185 (425)
Q Consensus 176 ~~~~~~~L~~ 185 (425)
.+++++||..
T Consensus 134 A~~l~~~L~~ 143 (147)
T PF04268_consen 134 AEYLWHWLED 143 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 20
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.02 E-value=0.0064 Score=53.91 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=65.4
Q ss_pred CcEEEeCCC-ceEEEEEcchHHHHHhhccccCCCC--CCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHH
Q 014411 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (425)
Q Consensus 103 ~vgl~DlS~-~~~i~V~G~dA~~fLq~l~tndi~~--l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~ 179 (425)
.+.+.|+|. ++.|.|+||.|.+.|+.++.-|+.. ++.+++..+.+- ++ ...+.+.+++.|-|.++.+...++
T Consensus 68 ~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~i~----~~-~v~i~RtGE~GfEi~v~~s~a~~l 142 (152)
T TIGR01375 68 PHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRTIFG----KI-AAVIWRTGEDTFEIIVRRSFAESL 142 (152)
T ss_pred ccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEEEEc----Ce-EEEEEEcCCCeEEEEEEhhHHHHH
Confidence 589999887 9999999999999999999888886 788888877652 22 234555678999999999999999
Q ss_pred HHHHHhc
Q 014411 180 TEMLNKY 186 (425)
Q Consensus 180 ~~~L~~~ 186 (425)
+++|...
T Consensus 143 w~~L~~a 149 (152)
T TIGR01375 143 WHWLVDA 149 (152)
T ss_pred HHHHHHH
Confidence 9998654
No 21
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=96.34 E-value=0.021 Score=51.91 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=66.5
Q ss_pred HhhCcEEEeCCC-ceEEEEEcchHHHHHhhccccCC--CCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCCh
Q 014411 100 ADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANF--EILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTC 176 (425)
Q Consensus 100 vr~~vgl~DlS~-~~~i~V~G~dA~~fLq~l~tndi--~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~ 176 (425)
+-....+.|+|| ...|+|+|+.|...|+.-|+.|+ +.+++|++.-|.|= ++ ...+.+.++|.|-|++=.+-.
T Consensus 99 ~~~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~----~~-~vvl~r~g~d~fei~V~RSFA 173 (189)
T COG4583 99 LEALASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIFG----KA-AVVLTRTGADTFEIEVWRSFA 173 (189)
T ss_pred ccccceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeeec----ce-EEEEEeecCCeEEEEeehhhH
Confidence 334568999998 78899999999999999999999 56789998866542 33 234556789999999999999
Q ss_pred HHHHHHHHhc
Q 014411 177 SSITEMLNKY 186 (425)
Q Consensus 177 ~~~~~~L~~~ 186 (425)
++++.+|..-
T Consensus 174 e~~w~~L~~a 183 (189)
T COG4583 174 ESLWHLLLDA 183 (189)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 22
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=95.92 E-value=0.042 Score=46.27 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEE
Q 014411 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW 161 (425)
Q Consensus 110 S~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~ 161 (425)
+.-+.|+|+|++|.+.++.++ ...+++..+.|+.+.+.+|.++|..++.
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~---~~~~~~r~~~~~~~~~~~~~~iDe~lv~ 60 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLF---GKSPKPRRAYYGTIYDEDGEPIDEVLVL 60 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTE---SSSTTTTEEEEEEEECSSTCEEEEEEEE
T ss_pred ceEEEEEeEcHHHHHHHHHHh---CccccCcEEEEEEEEcCCCccccceeEE
Confidence 456889999999999999999 2333678999999999999999875553
No 23
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=95.59 E-value=0.057 Score=45.48 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=52.5
Q ss_pred CcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE-CC-----eeEEEee--cCccCCCeEEEEeccc--cHHHHHH
Q 014411 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV-NG-----MPITVGV--GNVISEEGFSLLMSPA--AAGSVWE 269 (425)
Q Consensus 200 ~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i-~g-----~~v~~~R--~~~~ge~G~el~~~~~--~a~~l~~ 269 (425)
...+++-|.||+|.+++++++...+.. .......+.- ++ .-+...+ .|||||+-.||+|.-. ....+.+
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~~~~~~~-r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~il~ 90 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLFGKSPKP-RRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRRILE 90 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTESSSTTT-TEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHHHHH
T ss_pred ceEEEEEeEcHHHHHHHHHHhCccccC-cEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHHHHH
Confidence 356899999999999999998443332 1111122211 11 2233333 5899999999999764 3467888
Q ss_pred HHHhCCCCCCCHHHHH
Q 014411 270 TLLSQGAVPMGSNAWE 285 (425)
Q Consensus 270 ~L~~aG~~~~G~~a~~ 285 (425)
.|.+.|++++....+-
T Consensus 91 ~l~~~G~R~A~pGEFT 106 (114)
T PF10396_consen 91 ALLKAGARLAEPGEFT 106 (114)
T ss_dssp HHHHTT-EE--TTHHH
T ss_pred HHHHcCceEcCCchhh
Confidence 8988898665444433
No 24
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=95.20 E-value=0.043 Score=44.46 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=46.4
Q ss_pred eEEEEeccccHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCCCCCCC
Q 014411 254 GFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTN 302 (425)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG~~~~G~~a~~~lRiE~G~~~~g~dl~~ 302 (425)
||.|++|..-+..+|-+|.-.|+.+.|++.++.+-.|.|.+.+..|..+
T Consensus 1 gw~lIlP~~w~~~fW~~L~~~g~r~~GL~e~~~~~~E~g~~~FP~DyPd 49 (92)
T PF08170_consen 1 GWDLILPWGWGMPFWIALVYRGARAGGLRERRQLAFESGIPSFPDDYPD 49 (92)
T ss_pred CeEEEEecHHHHHHHHHHHHhCCeeehHHHHHHHHHHcCCCcCCCCCCC
Confidence 7999999999999999999999999999999999999999999998764
No 25
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=92.99 E-value=0.57 Score=49.04 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEE
Q 014411 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHA 160 (425)
Q Consensus 110 S~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv 160 (425)
+.-+.|+||||+|.+.++.++...++ ++.++.|+.+.++ |.++|..++
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~iD~~l~ 64 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKLP--KPRTAHYGHIRDP-GEVIDEVLV 64 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCCC--CCcEEEEEEEecC-CcccceEEE
Confidence 44688999999999999999964444 6777888888775 777766443
No 26
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=91.41 E-value=0.43 Score=49.40 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=41.9
Q ss_pred CceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEE
Q 014411 111 HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW 161 (425)
Q Consensus 111 ~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~ 161 (425)
.-+.++||||+|...+|.++.. +...++..+.|+.+.+++|.++|..++.
T Consensus 18 aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl 67 (454)
T COG0486 18 AIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVL 67 (454)
T ss_pred eEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEE
Confidence 4578999999999999999998 4333678899999999999999875553
No 27
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=88.40 E-value=3.9 Score=37.64 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=53.7
Q ss_pred EEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE-C--C---eeEEEeecCccCCCeEEEEeccccHHHHHH
Q 014411 196 QDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV-N--G---MPITVGVGNVISEEGFSLLMSPAAAGSVWE 269 (425)
Q Consensus 196 ~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i-~--g---~~v~~~R~~~~ge~G~el~~~~~~a~~l~~ 269 (425)
-|+++ +++|.|.||.|.+.|+.++..|+..++-..+...-+ + | ..+.+.| .++..|.+.++...+..+++
T Consensus 2 ~d~s~-~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~---~~~~~~~l~~~~~~~~~~~~ 77 (211)
T PF01571_consen 2 FDLSH-RGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYR---LGDDEFLLIVPASAADALLE 77 (211)
T ss_dssp EE-TT-SEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEE---EETTEEEEEECCTCHHHHHH
T ss_pred CCCCC-cEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEe---ecCceEEEEecchhHHHHHH
Confidence 46665 699999999999999999989998877666664433 2 2 2455555 45666999999999998888
Q ss_pred HHHh
Q 014411 270 TLLS 273 (425)
Q Consensus 270 ~L~~ 273 (425)
.|..
T Consensus 78 ~L~~ 81 (211)
T PF01571_consen 78 WLKK 81 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 28
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=86.62 E-value=4.7 Score=40.68 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=60.2
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|.+.|++. +..|.|.||.+.+.|+.++..|+..++-..+...-+ .| ..+.+.| .++.+|.|.++...+.
T Consensus 43 ~~~l~dls~-~~~i~v~G~Da~~fLq~~~t~dv~~l~~g~~~~~~~l~~~G~i~~d~~v~r---~~~~~~ll~~~~~~~~ 118 (359)
T PRK00389 43 DAGLFDVSH-MGEVDVTGPDALAFLQYLLANDVSKLKPGKAQYTCMLNEDGGVIDDLIVYK---LSEDEYLLVVNAANRE 118 (359)
T ss_pred CceEEECCC-cEEEEEECCCHHHHHhhhcccccccCCCCcEEEeEEECCCCCEEEeEEEEE---ecCCEEEEEECcccHH
Confidence 588889885 799999999999999999988988775555443322 23 2355665 4577899999998888
Q ss_pred HHHHHHHhC
Q 014411 266 SVWETLLSQ 274 (425)
Q Consensus 266 ~l~~~L~~a 274 (425)
.+.+.|...
T Consensus 119 ~~~~~L~~~ 127 (359)
T PRK00389 119 KDLAWIKSH 127 (359)
T ss_pred HHHHHHHhh
Confidence 888887763
No 29
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=83.66 E-value=7.6 Score=39.27 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=58.1
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-+.|++. +..+.|.||.+.+.|+.++..|++.++-..+....+ .| ..+.+.| .+|..|.|.++.+.+.
T Consensus 42 ~~~l~dls~-~~~i~vsG~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~i~~d~~v~r---~~~d~~~l~~~~~~~~ 117 (361)
T TIGR00528 42 DAGLFDVSH-MGIVDLSGSRSLEFLQRLLPNDVAALTPGKAQYSVLLNPQGGVVDDLIIYY---FGEDRFRLVVNAATRE 117 (361)
T ss_pred hCcEEECCC-cEEEEEECCCHHHHHhHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEE---ecCCEEEEEECCccHH
Confidence 577889885 799999999999999999988988765555553332 22 1355555 5677899999988877
Q ss_pred HHHHHHHh
Q 014411 266 SVWETLLS 273 (425)
Q Consensus 266 ~l~~~L~~ 273 (425)
.+++.|..
T Consensus 118 ~~~~~l~~ 125 (361)
T TIGR00528 118 KDLSWITE 125 (361)
T ss_pred HHHHHHHH
Confidence 77766664
No 30
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=83.43 E-value=8.2 Score=39.49 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=61.7
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE----CC--eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NG--MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i----~g--~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
+|-|-|+|. ++.+.|.||.|.+.|+.++..|++.++.+.++-..+ ++ -...+.| .+|..|-+.+....+.
T Consensus 47 ~aGlfDvSh-mgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~r---l~~d~f~lv~~a~~~~ 122 (379)
T COG0404 47 AAGLFDVSH-MGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYR---LGEDRFFLVTNAATAE 122 (379)
T ss_pred cCceEeccC-ceEEEEECCCHHHHHHHHcccccCcCCCCcEEEeeeECCCCCEEeeEEEEE---ecCCeEEEEeCccchH
Confidence 577888875 689999999999999999999999887666664433 22 2466776 7899999999888888
Q ss_pred HHHHHHHh
Q 014411 266 SVWETLLS 273 (425)
Q Consensus 266 ~l~~~L~~ 273 (425)
..++.|..
T Consensus 123 ~~~~~l~~ 130 (379)
T COG0404 123 KDLAWLER 130 (379)
T ss_pred HHHHHHHH
Confidence 88777765
No 31
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=81.69 E-value=7.5 Score=40.66 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=50.9
Q ss_pred CcEEEEEEeCCChHHHHHhcccCCCCCCCCc-eeeEEE------ECCeeEEEee--cCccCCCeEEEEecccc--HHHHH
Q 014411 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYG-THRHYS------VNGMPITVGV--GNVISEEGFSLLMSPAA--AGSVW 268 (425)
Q Consensus 200 ~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~-~~~~~~------i~g~~v~~~R--~~~~ge~G~el~~~~~~--a~~l~ 268 (425)
...+++-|.||+|.+++++++......-|+. ....+. ++..-+...+ .|||||+=.||+|.-.. ...+.
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il 86 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLNTASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEIL 86 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCCCCCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHH
Confidence 3468899999999999999974321111221 111111 2222233344 58999999999997643 46788
Q ss_pred HHHHhCCCCCC
Q 014411 269 ETLLSQGAVPM 279 (425)
Q Consensus 269 ~~L~~aG~~~~ 279 (425)
+.|.+.|++++
T Consensus 87 ~~l~~~g~R~A 97 (442)
T TIGR00450 87 QLCLKSGARLA 97 (442)
T ss_pred HHHHHcCCeEc
Confidence 88888887544
No 32
>PLN02319 aminomethyltransferase
Probab=81.02 E-value=13 Score=38.25 Aligned_cols=78 Identities=13% Similarity=0.237 Sum_probs=59.0
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-+.|++. ++.|.|.||.+.+.|+.++..|++.++-+.+....+ .| ..+.+.| .++..|-|.++.....
T Consensus 74 ~~gl~DlS~-~~~i~V~G~Da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r---~~~d~~~l~~~~~~~~ 149 (404)
T PLN02319 74 NGSLFDVSH-MCGLSLKGKDAIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIIDDTVITK---VTDDHIYLVVNAGCRD 149 (404)
T ss_pred CeEEEECCC-cEEEEEECCCHHHHHhhhcccccCCCCCCCEEEeEEECCCCeEEEEEEEEE---EcCCEEEEEECCccHH
Confidence 688899985 799999999999999999999998776565554333 22 2456666 4577899999888777
Q ss_pred HHHHHHHh
Q 014411 266 SVWETLLS 273 (425)
Q Consensus 266 ~l~~~L~~ 273 (425)
.+++.|..
T Consensus 150 ~~~~~l~~ 157 (404)
T PLN02319 150 KDLAHIEE 157 (404)
T ss_pred HHHHHHHh
Confidence 77666654
No 33
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=79.01 E-value=4.1 Score=42.59 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=38.1
Q ss_pred CCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEE
Q 014411 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHA 160 (425)
Q Consensus 110 S~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv 160 (425)
+.-+.|+||||+|.+.++.++..+.. .++.+..|+.+.+++|.++|..++
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~~l~ 56 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDDELL 56 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeeeEEE
Confidence 34588999999999999999843121 145677899999888999987544
No 34
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=76.05 E-value=22 Score=36.12 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE----CC--eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NG--MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i----~g--~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
+|-+-|++. +..+.|.||.|.+.|+.++..|++.++.++...+-+ ++ ..+.+.| .+|..|.|.+......
T Consensus 53 ~~gl~D~S~-~~~i~V~G~Da~~fL~~l~t~di~~l~~G~~~yt~~ln~~G~i~~D~~v~r---~~ed~~~l~~~~~~~~ 128 (368)
T PRK12486 53 HVQVWDVAV-ERQVEIRGPDAARLVQMLTPRDLRGMKPGQCYYVPIVDETGGMLNDPVALK---LAEDRWWISIADSDLL 128 (368)
T ss_pred cceEEEcCC-cEEEEEECCCHHHHHHHhcccccccCCCCcEEEEEEEcCCCcEEeeEEEEE---ecCCEEEEEEcCccHH
Confidence 688889875 589999999999999999999998876666554332 22 2466776 4577888877665544
Q ss_pred HHHHHHHh
Q 014411 266 SVWETLLS 273 (425)
Q Consensus 266 ~l~~~L~~ 273 (425)
..++.+..
T Consensus 129 ~~l~~~~~ 136 (368)
T PRK12486 129 LWVKGLAN 136 (368)
T ss_pred HHHHHhhh
Confidence 44454443
No 35
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=74.43 E-value=9.5 Score=39.73 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=50.7
Q ss_pred CcEEEEEEeCCChHHHHHhcccCCCCCCCCcee--eEE------EECCeeEEEee--cCccCCCeEEEEecccc--HHHH
Q 014411 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTH--RHY------SVNGMPITVGV--GNVISEEGFSLLMSPAA--AGSV 267 (425)
Q Consensus 200 ~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~--~~~------~i~g~~v~~~R--~~~~ge~G~el~~~~~~--a~~l 267 (425)
...+++-+.||+|.+++++++.. +...+.... ..+ .++..-+...+ .|||||+=.||+|.-.. ...+
T Consensus 17 ~aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~i 95 (454)
T COG0486 17 GAIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLI 95 (454)
T ss_pred ceEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHH
Confidence 35678899999999999999874 222221111 111 12223344444 58999999999997654 4568
Q ss_pred HHHHHhCCCC
Q 014411 268 WETLLSQGAV 277 (425)
Q Consensus 268 ~~~L~~aG~~ 277 (425)
.+.+++.|++
T Consensus 96 L~~~l~~GaR 105 (454)
T COG0486 96 LELLLKLGAR 105 (454)
T ss_pred HHHHHHcCCe
Confidence 8888888863
No 36
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=74.16 E-value=26 Score=35.58 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=57.7
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
+|-+-|++. ++.|.|.||.|.+.|+.++..|+..++-+.+....+ .| ..+.+.|. +..|-|.++...+.
T Consensus 51 ~a~l~Dls~-~~~i~v~G~Da~~fLq~~~tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~----~d~~~L~~~~~~~~ 125 (370)
T PRK13579 51 HAGLFDVSH-MGQIEVSGKDAAAALERLVPVDILALKEGRQRYTFFTNEQGGILDDLMVTNL----GDHLFLVVNAACKD 125 (370)
T ss_pred ccEEEECCC-cEEEEEECCCHHHHHHHhccccCCCCCCCCEEEeEEECCCCeEEEeEEEEEE----CCeEEEEECcCCHH
Confidence 588889885 799999999999999999999998776665554332 22 24666664 35788888887777
Q ss_pred HHHHHHHh
Q 014411 266 SVWETLLS 273 (425)
Q Consensus 266 ~l~~~L~~ 273 (425)
.+++.|..
T Consensus 126 ~~~~~l~~ 133 (370)
T PRK13579 126 ADIAHLRE 133 (370)
T ss_pred HHHHHHHH
Confidence 77776664
No 37
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=71.26 E-value=25 Score=40.62 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=60.3
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-|-|++. ++.|.|.||.|.+.|+.++..|++.++-+.++..-+ .| ..+.+.| .+|..|-|.++...+.
T Consensus 645 ~vgl~D~S~-~g~i~V~G~DA~~fL~~~~tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r---~~ed~~~l~~~~~~~~ 720 (985)
T TIGR01372 645 SVGLFDAST-LGKIEVQGPDAAEFLNRVYTNAFTKLKVGKARYGLMLREDGMVFDDGVTSR---LAEDRFLMTTTTGGAA 720 (985)
T ss_pred ceEEEECCC-cEEEEEECcCHHHHHhhhcccccCcCCCCCEEEeEEECCCCeEEEeEEEEE---EeCCEEEEEeCCcCHH
Confidence 689999986 799999999999999999999998877666664433 22 1345555 5688899999988888
Q ss_pred HHHHHHHh
Q 014411 266 SVWETLLS 273 (425)
Q Consensus 266 ~l~~~L~~ 273 (425)
.+++.|..
T Consensus 721 ~~~~~L~~ 728 (985)
T TIGR01372 721 RVLQHLEE 728 (985)
T ss_pred HHHHHHHH
Confidence 87776654
No 38
>PRK09559 putative global regulator; Reviewed
Probab=58.15 E-value=39 Score=33.64 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=55.0
Q ss_pred eEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CCe---eEEEeecCccCCCeEEEEeccccHHH
Q 014411 193 VEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NGM---PITVGVGNVISEEGFSLLMSPAAAGS 266 (425)
Q Consensus 193 V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g~---~v~~~R~~~~ge~G~el~~~~~~a~~ 266 (425)
..+.++++ +++|.|.||.+.+.|+.++-.|+..++.......-+ .|. .+++.|. + .+|-+.++.+.+..
T Consensus 19 ~~l~~L~~-~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~---~-~~~~l~~~~~~~~~ 93 (327)
T PRK09559 19 LTLISLDD-WALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRR---G-DGFAWIERRSVREN 93 (327)
T ss_pred eEEEcCcc-ceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEe---C-CeEEEEeChhhhHH
Confidence 56667764 799999999999999999888888765554443222 231 3455552 3 45888899888888
Q ss_pred HHHHHHhC
Q 014411 267 VWETLLSQ 274 (425)
Q Consensus 267 l~~~L~~a 274 (425)
+.+.|...
T Consensus 94 ~~~~L~ky 101 (327)
T PRK09559 94 QLTELKKY 101 (327)
T ss_pred HHHHHhhc
Confidence 88888763
No 39
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=55.86 E-value=91 Score=23.88 Aligned_cols=40 Identities=28% Similarity=0.211 Sum_probs=31.0
Q ss_pred CCCCCCceeeCCeeeeEEEEeeeCCCCCCeEEEEEEeCCC
Q 014411 349 PAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKD 388 (425)
Q Consensus 349 ~~~~g~~I~~~g~~VG~vtS~~~s~~~~~~iala~v~~~~ 388 (425)
-+..|++|...|-.||+|++..+.+..++-..-..|++++
T Consensus 14 GL~~gs~V~~~Gv~VG~V~~i~l~~~~~~v~v~~~i~~~~ 53 (81)
T PF02470_consen 14 GLSVGSPVRYRGVEVGKVTSIELDPDGNRVRVTLRIDPDY 53 (81)
T ss_pred CCCCcCEEEECCEEEEEEEEEEEcCCCCEEEEEEEEcCCc
Confidence 3678999999999999999998755555555555666665
No 40
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=54.73 E-value=29 Score=34.86 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=60.2
Q ss_pred HHHHHHhhC---cEEEeCCCceEEEEEcchHHHHHhhccc--cCCCCCCCCceEEeeeeCCCCcEEEEEEE---EEeCCe
Q 014411 95 EALDAADNG---VAAVDLSHFGRIRVSGDDRIQFLHNQST--ANFEILREGQGCDTVFVTPTARTIDIAHA---WIMKNA 166 (425)
Q Consensus 95 ~E~~avr~~---vgl~DlS~~~~i~V~G~dA~~fLq~l~t--ndi~~l~~G~~~~t~~Ln~~G~i~d~~iv---~~~~d~ 166 (425)
++..|.++. |.+==+..++.+-+.||.+++-||.+++ .|+.+|+-|+..+.-+- |... ..+. |.+||.
T Consensus 151 ~~~~a~ks~gkDv~~~~~~~r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~~---G~~~-~~vtr~gytgEDG 226 (401)
T KOG2770|consen 151 DHFFAWKSKGKDVSWETLDGRSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDFK---GGPG-CRVTRGGYTGEDG 226 (401)
T ss_pred HHHHhhhhccceeeEEEecccchhhhcChHHHHHHHHhhccccchhcccccceEEEEec---CCCc-eEEeccccccCCc
Confidence 334454432 4442233789999999999999999999 89999888887755443 3321 1122 357999
Q ss_pred EEEEECCCChHHHHHHHH
Q 014411 167 VILVVSPLTCSSITEMLN 184 (425)
Q Consensus 167 ~~l~~~~~~~~~~~~~L~ 184 (425)
|-|.++...+.++.+.|-
T Consensus 227 feisv~~~~Av~la~~LL 244 (401)
T KOG2770|consen 227 FEISVPPEGAVDLAETLL 244 (401)
T ss_pred eEEecCCchhHHHHHHHh
Confidence 999999888877777653
No 41
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=53.89 E-value=45 Score=29.72 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=46.8
Q ss_pred cHHHHHHCCCeEecCCcc-cccCC----hHHHH-HHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCC--c
Q 014411 70 LLETVKSEGAKISGEGIV-ETFGN----DGEAL-DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREG--Q 141 (425)
Q Consensus 70 l~~~~~~~Ga~f~~~G~p-~~f~~----~~~E~-~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G--~ 141 (425)
||+..+..|-..-. .| ..|.+ ..+|. .-|+.+-|+ ...-|.||.|.|++|...-+.|....=-.+... +
T Consensus 49 Ly~ky~~~Gf~VLg--FPcNQF~~QEPg~~eEI~~fC~~~YgV-tFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~Ik 125 (162)
T COG0386 49 LYKKYKDKGFEVLG--FPCNQFGGQEPGSDEEIAKFCQLNYGV-TFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIK 125 (162)
T ss_pred HHHHHhhCCcEEEe--ccccccccCCCCCHHHHHHHHHhccCc-eeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccc
Confidence 56666666654333 33 34421 23443 334444443 233489999999999888887766542111122 3
Q ss_pred eEEee-eeCCCCcEEE
Q 014411 142 GCDTV-FVTPTARTID 156 (425)
Q Consensus 142 ~~~t~-~Ln~~G~i~d 156 (425)
..++- +.+.+|+|+.
T Consensus 126 WNFtKFLvdr~G~VV~ 141 (162)
T COG0386 126 WNFTKFLVDRDGNVVK 141 (162)
T ss_pred eeeEEEEEcCCCcEEE
Confidence 34444 5578999864
No 42
>PF06978 POP1: Ribonucleases P/MRP protein subunit POP1; InterPro: IPR009723 This entry represents a conserved region approximately 150 residues long located towards the N terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (3.1.26.5 from EC) []. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.; GO: 0004526 ribonuclease P activity, 0001682 tRNA 5'-leader removal
Probab=51.52 E-value=14 Score=33.93 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=35.5
Q ss_pred cHHHHHHCCCeEec-CC--ccccc--CChHHHHHHHhhCcEEEeCCCceEEEEEc
Q 014411 70 LLETVKSEGAKISG-EG--IVETF--GNDGEALDAADNGVAAVDLSHFGRIRVSG 119 (425)
Q Consensus 70 l~~~~~~~Ga~f~~-~G--~p~~f--~~~~~E~~avr~~vgl~DlS~~~~i~V~G 119 (425)
-|=||.+- ..|.. +| +|..= -....-+++.++++.++|.|+++.|+|+|
T Consensus 133 THiWHAKR-f~M~~~wG~~lp~~~~~K~~R~~~Ra~~~~~~~~D~SY~~~i~l~g 186 (187)
T PF06978_consen 133 THIWHAKR-FHMIKRWGYRLPLTPTQKSFRATYRASKHGCVLHDASYYSCIELEG 186 (187)
T ss_pred hhhHHHHH-HHHHHHcCCCCCCCCCCcchhHHHHHhcCCEEEEecccceeEEEEe
Confidence 45566554 56666 66 54311 12356678999999999999999999998
No 43
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=49.91 E-value=44 Score=33.14 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=55.0
Q ss_pred eEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEE---ECCeeEEEeecCccCCCeEEEEeccccHHHHHH
Q 014411 193 VEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYS---VNGMPITVGVGNVISEEGFSLLMSPAAAGSVWE 269 (425)
Q Consensus 193 V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~---i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~ 269 (425)
..+.+.+ ++++|.|.|+.+.+.|+.+.-.|+.+++........ ..|.-....|+...+ .++-+.++......+..
T Consensus 14 ~~l~~l~-~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~~-d~~~l~~~~~~~~~~l~ 91 (305)
T COG0354 14 LTLVLLS-DRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRRG-DGLYLDTDKSVLEALLK 91 (305)
T ss_pred cEEEecC-CceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEeC-CeEEEEcchhhcHHHHH
Confidence 4455554 479999999999999999877888877755544322 233222222322233 88999999999888888
Q ss_pred HHHhC
Q 014411 270 TLLSQ 274 (425)
Q Consensus 270 ~L~~a 274 (425)
.|...
T Consensus 92 ~L~kY 96 (305)
T COG0354 92 RLKKY 96 (305)
T ss_pred HHHhc
Confidence 88753
No 44
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=34.04 E-value=72 Score=24.36 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=31.4
Q ss_pred cchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEE
Q 014411 119 GDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVIL 169 (425)
Q Consensus 119 G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l 169 (425)
=|+..+=|=.+.+..+. -. -+.++|++|.-+||+-+.+.+|..++
T Consensus 24 lP~SleeLl~ia~~kfg-----~~-~~~v~~~dgaeIdDI~~IRDgD~L~~ 68 (69)
T PF11834_consen 24 LPDSLEELLKIASEKFG-----FS-ATKVLNEDGAEIDDIDVIRDGDHLYL 68 (69)
T ss_pred cCccHHHHHHHHHHHhC-----CC-ceEEEcCCCCEEeEEEEEEcCCEEEE
Confidence 35665555555555443 22 57889999999999888888887765
No 45
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=32.56 E-value=1.6e+02 Score=29.60 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=52.4
Q ss_pred cccCCCCCCCCceEEe-eeeCCCCcEEEE---EEEE-EeCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEE
Q 014411 130 STANFEILREGQGCDT-VFVTPTARTIDI---AHAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCL 204 (425)
Q Consensus 130 ~tndi~~l~~G~~~~t-~~Ln~~G~i~d~---~iv~-~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~ 204 (425)
+-|.+| +.|...|+ .+.+++|+-.-. +--+ --....||..+.-..+.+.+.|..-. +.-+.-..+.-++
T Consensus 80 lynkvP--pnglvly~gti~tedgkekkv~idfepfkpintslyLcdNkfhte~l~~Ll~sd~----kfgfivmDg~~tl 153 (431)
T KOG0688|consen 80 LYNKVP--PNGLVLYTGTIVTEDGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALKELLESDN----KFGFIVMDGNGTL 153 (431)
T ss_pred HhccCC--CCceEEEeeeeEccCCceeeeecccccccccccceEecCCccchHHHHHHHhhcc----cccEEEEcCCcee
Confidence 457787 78999999 799999994311 1111 11234455555445555555554321 2222223344578
Q ss_pred EEEeCCChHHHHHhccc
Q 014411 205 FVVVGPKSNQVMRDLNL 221 (425)
Q Consensus 205 l~l~GP~a~~vl~~l~~ 221 (425)
++..+++.+++|.+++-
T Consensus 154 fgtl~gntrevLhkftV 170 (431)
T KOG0688|consen 154 FGTLQGNTREVLHKFTV 170 (431)
T ss_pred EEEeccchHhhhheeee
Confidence 99999999999999863
No 46
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.49 E-value=59 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.0
Q ss_pred eEEEEeccccHHHHHHHHHhCCCCCCC
Q 014411 254 GFSLLMSPAAAGSVWETLLSQGAVPMG 280 (425)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG~~~~G 280 (425)
-|++|+|.++...|-++|.++|+.-.|
T Consensus 7 K~~vyVP~~~~e~vr~aL~~aGag~iG 33 (109)
T COG3323 7 KIEVYVPEEYVEQVRDALFEAGAGHIG 33 (109)
T ss_pred EEEEEeCHHHHHHHHHHHHhcCCccee
Confidence 489999999999999999999976665
No 47
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=26.68 E-value=3e+02 Score=30.59 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=61.8
Q ss_pred HHHHHHhhCcEEEeCCC-ceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCC-cEEEEEEEEEeCCeEEEEEC
Q 014411 95 EALDAADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTA-RTIDIAHAWIMKNAVILVVS 172 (425)
Q Consensus 95 ~E~~avr~~vgl~DlS~-~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G-~i~d~~iv~~~~d~~~l~~~ 172 (425)
+|..--+.+|-|-|++. .+.|.|.||.+.+.||-++-.|+.. +.=....+-.++.-. +|...-+.+.+|=.|.|-++
T Consensus 599 k~~~~~~~~v~l~DvT~~~~~l~i~GP~sR~vLqelt~~dls~-~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip 677 (856)
T KOG2844|consen 599 KEMPKGGSNVELKDVTDELGALSIIGPQSRKVLQELTDADLSD-DHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIP 677 (856)
T ss_pred HHhhccCCceeeeechhhhceeeecCchHHHHHHhccCCCCCc-cccCcceeeeeeccccceEEEEEEeccccceEEEec
Confidence 34333477899999986 8999999999999999999999984 111111111222111 34455566677888989999
Q ss_pred CCChHHHHHHHHh
Q 014411 173 PLTCSSITEMLNK 185 (425)
Q Consensus 173 ~~~~~~~~~~L~~ 185 (425)
......+.+.|-+
T Consensus 678 ~e~~~~vY~~im~ 690 (856)
T KOG2844|consen 678 NEDAVAVYRAIMN 690 (856)
T ss_pred hHHHHHHHHHHHh
Confidence 8877777776644
No 48
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=26.59 E-value=47 Score=26.92 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=30.0
Q ss_pred eEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcE
Q 014411 113 GRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART 154 (425)
Q Consensus 113 ~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i 154 (425)
.++.++|+.+.+||+.++.-=+|+++..+....--.+..|.+
T Consensus 4 ~kvTLRg~~m~~FL~kli~~vlPrik~f~g~~~~~fd~~Gn~ 45 (95)
T PF00673_consen 4 CKVTLRGKKMYEFLDKLITIVLPRIKDFKGLKASSFDNSGNF 45 (95)
T ss_dssp EEEEEEHHHHHHHHHHHHHTTTTTSSSTSSBSSTTBSSSSEE
T ss_pred EEEEEccHHHHHHHHHHHHHhhhhcccccccCccccCCCceE
Confidence 468899999999999999997776655444333334555653
No 49
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=23.03 E-value=34 Score=26.92 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=9.6
Q ss_pred eecccccCcc
Q 014411 20 LHNTRTTKFF 29 (425)
Q Consensus 20 ~~~~r~~~~~ 29 (425)
+|+.|||+|.
T Consensus 67 lePtRyGDWe 76 (84)
T COG5508 67 LEPTRYGDWE 76 (84)
T ss_pred CCcccccccc
Confidence 8999999998
No 50
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.57 E-value=3.1e+02 Score=20.14 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=12.5
Q ss_pred CCCCceeeCCeeee
Q 014411 351 EPGSPIIVDGKKVG 364 (425)
Q Consensus 351 ~~g~~I~~~g~~VG 364 (425)
+.|..|+.||+.+|
T Consensus 10 p~gA~V~vdg~~~G 23 (71)
T PF08308_consen 10 PSGAEVYVDGKYIG 23 (71)
T ss_pred CCCCEEEECCEEec
Confidence 45899999999999
Done!