Query 014411
Match_columns 425
No_of_seqs 283 out of 1735
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gir_A Aminomethyltransferase; 100.0 1E-80 3.4E-85 630.9 37.3 347 58-418 32-393 (393)
2 1yx2_A Aminomethyltransferase; 100.0 1.6E-79 5.4E-84 618.9 41.9 349 56-413 2-365 (365)
3 1pj5_A N,N-dimethylglycine oxi 100.0 1.5E-79 5.2E-84 678.7 37.7 388 20-419 388-829 (830)
4 1wos_A Aminomethyltransferase; 100.0 7.7E-78 2.6E-82 606.3 46.0 345 68-417 4-362 (364)
5 1wsr_A Aminomethyltransferase; 100.0 3E-78 1E-82 611.5 40.5 354 57-419 3-375 (375)
6 1vlo_A Aminomethyltransferase; 100.0 2.9E-78 1E-82 612.0 40.3 344 55-415 10-373 (381)
7 3tfi_A GCVT-like aminomethyltr 100.0 8.5E-78 2.9E-82 606.2 35.6 350 45-411 2-369 (369)
8 1v5v_A Aminomethyltransferase; 100.0 1.3E-75 4.4E-80 596.8 45.4 352 57-417 3-396 (401)
9 2gag_A Heterotetrameric sarcos 100.0 5.1E-73 1.8E-77 634.3 43.3 398 15-419 502-964 (965)
10 3ttg_A Putative aminomethyltra 100.0 3.1E-72 1.1E-76 562.9 36.4 313 95-411 27-355 (355)
11 1vly_A SPOT PR51, unknown prot 100.0 5.6E-63 1.9E-67 493.0 35.1 300 102-414 29-338 (338)
12 2gag_C Heterotetrameric sarcos 100.0 1.1E-28 3.8E-33 229.3 13.3 160 100-275 28-193 (210)
13 1x31_C Sarcosine oxidase gamma 99.9 8.3E-28 2.9E-32 222.9 14.2 157 100-275 26-191 (206)
14 2gag_C Heterotetrameric sarcos 96.7 0.01 3.5E-07 54.2 11.1 79 103-186 111-192 (210)
15 1x31_C Sarcosine oxidase gamma 96.6 0.01 3.5E-07 54.1 9.9 79 103-186 109-190 (206)
16 2bry_A NEDD9 interacting prote 95.9 0.00039 1.3E-08 71.9 -4.0 51 18-75 439-495 (497)
17 3gee_A MNME, tRNA modification 94.2 0.4 1.4E-05 49.1 12.7 50 110-160 28-82 (476)
18 3gir_A Aminomethyltransferase; 89.2 2.4 8.2E-05 42.1 11.1 78 192-273 75-158 (393)
19 1wsr_A Aminomethyltransferase; 88.2 3.6 0.00012 40.4 11.6 77 192-272 47-129 (375)
20 1v5v_A Aminomethyltransferase; 87.6 2.4 8.3E-05 42.1 10.0 76 192-271 46-127 (401)
21 1wos_A Aminomethyltransferase; 87.1 3.8 0.00013 40.0 11.0 79 192-274 42-126 (364)
22 1yx2_A Aminomethyltransferase; 86.9 3.3 0.00011 40.4 10.5 79 192-274 46-130 (365)
23 1vly_A SPOT PR51, unknown prot 85.8 3.2 0.00011 40.2 9.6 77 193-274 31-113 (338)
24 1vlo_A Aminomethyltransferase; 85.6 3.3 0.00011 40.8 9.7 78 192-273 55-139 (381)
25 3geh_A MNME, tRNA modification 83.9 3 0.0001 42.3 8.7 52 110-161 22-75 (462)
26 3geh_A MNME, tRNA modification 82.1 10 0.00034 38.4 11.7 80 200-279 22-115 (462)
27 1xzp_A Probable tRNA modificat 81.3 1.9 6.3E-05 44.2 5.9 50 110-162 46-96 (482)
28 3ttg_A Putative aminomethyltra 77.2 7 0.00024 38.1 8.4 77 192-273 35-118 (355)
29 2gag_A Heterotetrameric sarcos 76.9 9.5 0.00032 42.3 10.3 77 192-272 623-705 (965)
30 3tfi_A GCVT-like aminomethyltr 74.0 12 0.00041 36.6 9.2 79 102-186 141-223 (369)
31 1pj5_A N,N-dimethylglycine oxi 64.2 12 0.00041 40.6 7.4 79 103-186 591-676 (830)
32 1xzp_A Probable tRNA modificat 60.4 41 0.0014 34.1 10.2 79 201-280 47-136 (482)
No 1
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=1e-80 Score=630.87 Aligned_cols=347 Identities=20% Similarity=0.257 Sum_probs=322.7
Q ss_pred CCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccC
Q 014411 58 PFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (425)
Q Consensus 58 ~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~-~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tnd 133 (425)
++|+|| ||++|+++||+|.+ .| +|.+|+ ++.+||+|+|++|+|||+|+|++|+|+|+||.+|||+++|||
T Consensus 32 ~~r~tp------l~~~h~~~GA~~~~~~gw~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tnd 105 (393)
T 3gir_A 32 SLKTLP------LYELHEKAGAKFGAFAGWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPVD 105 (393)
T ss_dssp CCEECT------THHHHHHTTCEEEEETTEEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred ccccCc------chHHHHHcCCEEEeeCCEecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhcccc
Confidence 466666 99999999999999 46 999998 899999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCCh
Q 014411 134 FEILREGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKS 212 (425)
Q Consensus 134 i~~l~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a 212 (425)
|++|++|+++|++|||++|+|+||+++++ .+|+|+|+++++..+.+++||++++.. .+|+| .++++++|+||||+|
T Consensus 106 v~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~~-~~V~i--~~~~~a~lalqGP~A 182 (393)
T 3gir_A 106 AALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG-FECQV--IALERVLLALQGPQA 182 (393)
T ss_dssp TTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT-SSCEE--EECCCEEEEEESTTH
T ss_pred cccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhccC-CceEE--EECCEEEEEEECccH
Confidence 99999999999999999999998877765 589999999999999999999999754 37999 678899999999999
Q ss_pred HHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhC-CCCCCCHHHHHHHHHHc
Q 014411 213 NQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRIIK 291 (425)
Q Consensus 213 ~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~a~~~lRiE~ 291 (425)
+++|+++++ |++++||++++.+.+ ++++.|++|+||+||||++|.+++..+|++|+++ |..|+|+.||++||||+
T Consensus 183 ~~vL~~l~~-~l~~~~~~~~~~~~i---~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L~~a~g~~p~Gl~A~d~LRiEa 258 (393)
T 3gir_A 183 AAVLADAGL-PGNELLFMQGFEPQQ---DWFITRSGYTGEDGFEIALPIGCARALAEKLLGDSRVEWVGLAARDSLRLEA 258 (393)
T ss_dssp HHHHHHTTC-CCTTCCTTBEECSST---TCEEESCCSSSSSEEEEEECHHHHHHHHHHHHTSTTEEECCHHHHHHHHHHT
T ss_pred HHHHHHhcC-chhhcccceeEEEEE---eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHHHhcCCceeccccchhhHHHhc
Confidence 999999988 888999998876555 8999999999999999999999999999999997 67999999999999999
Q ss_pred CCCCCCCCCCCCCCccccccccccccC---CCCcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCcee-eCCeeeeE
Q 014411 292 GRPAPGKELTNEFNVLEAGLWNSISLD---KGCYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPII-VDGKKVGK 365 (425)
Q Consensus 292 G~~~~g~dl~~~~~P~EagL~~~V~~~---KgcfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~-~~g~~VG~ 365 (425)
|+|.||.|++++++|+|+||+|+|+|+ ||||+|||+++|+++ .|++||||+|++++ ++..|++|+ .+|+.||+
T Consensus 259 G~p~~g~dl~~~~~P~EagL~~~V~~~k~~Kg~fiGqeal~r~~~-~G~~rrlvgl~~~~~~~~~~G~~v~~~~g~~vG~ 337 (393)
T 3gir_A 259 GLCLHGNDITPDTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQ-KGPSRCRVGLKPQTRQPIRAGAVLFDNEGNRIGV 337 (393)
T ss_dssp TCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHH-HCCSSEEEEEEESSSSCCCTTCEEECTTSCEEEE
T ss_pred CcccchhhcCCCCCHHHCCchheecCCCCCCCCCcCHHHHHHHHh-cCCCeEEEEEEECCCcCCCCCCEEEccCCeEEEE
Confidence 999999999999999999999999998 799999999999986 45889999999985 577899999 78999999
Q ss_pred EEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCC
Q 014411 366 LTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPL 418 (425)
Q Consensus 366 vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~ 418 (425)
|||++|||+++++||||||+.+++++|++|++ |++++|+|++.||+++.++++
T Consensus 338 VTS~~~sp~l~~~iaLa~v~~~~~~~G~~l~v~i~g~~~~a~v~~~PF~~~~~~~~ 393 (393)
T 3gir_A 338 VTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYFKG 393 (393)
T ss_dssp EEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCC-
T ss_pred EEEEEECCCCCcEEEEEEEcHHHcCCCCEEEEEECCEEEEEEEecCCCCCCCCCCC
Confidence 99999999999999999999999999999886 888999999999999998763
No 2
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-79 Score=618.88 Aligned_cols=349 Identities=24% Similarity=0.380 Sum_probs=325.3
Q ss_pred CCCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhcccc
Q 014411 56 VLPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (425)
Q Consensus 56 gr~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tn 132 (425)
.|++|+|| ||++|+++||+|.+ .| ||.+|+++.+||+|+|++|++||+|+|++|+|+|+||.+|||+++||
T Consensus 2 ~~~~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t~ 75 (365)
T 1yx2_A 2 NAMLKRTP------LFDLYKEYGGKTIDFGGWELPVQFSSIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTN 75 (365)
T ss_dssp ---CBCCT------TGGGHHHHTCEEEEETTEEEEEESSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSS
T ss_pred CCccccCc------cHHHHHHcCCEEEeECCEEhhhhcCCHHHHHHHHHhCcEEEECCCeEEEEEECCCHHHHHHHhccc
Confidence 47788888 99999999999999 56 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCC
Q 014411 133 NFEILREGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPK 211 (425)
Q Consensus 133 di~~l~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~ 211 (425)
||++|++|+++|++|||++|+|++|++++. .+|+|+|+++++..+.+++||++++. .+|+|+|+++++++|+|+||+
T Consensus 76 dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~--~~V~i~d~s~~~~~lal~Gp~ 153 (365)
T 1yx2_A 76 DVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEHAA--GDVQIDNQSDQIALLAVQGPK 153 (365)
T ss_dssp CGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHTCC--SSCEEEECTTTEEEEEEESTT
T ss_pred ccccCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHhhcc--CCeEEEECcCCEEEEEEECcC
Confidence 999999999999999999999998877765 57899999999999999999999965 479999999999999999999
Q ss_pred hHHHHHhcccCCCCCCCCceee-EEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCC----CCCCCHHHHHH
Q 014411 212 SNQVMRDLNLGDLVGEAYGTHR-HYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNAWEK 286 (425)
Q Consensus 212 a~~vl~~l~~~dl~~~p~~~~~-~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG----~~~~G~~a~~~ 286 (425)
|+++|++++..|++++||+.+. .+.+++.++++.|.+|+||+||||+++.+++..+|++|+++| ..|+|+.||++
T Consensus 154 a~~~L~~l~~~dl~~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~~~ 233 (365)
T 1yx2_A 154 AEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAMHIWKKIIDAGDAYGLIPCGLGARDT 233 (365)
T ss_dssp HHHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHGGGTEEEECHHHHHH
T ss_pred HHHHHHHhhCCChhhCCcceeEEEEEECCeEEEEEeCcccCCCEEEEEEcHHHHHHHHHHHHhcchhcCceeCCHHHHHH
Confidence 9999999998888889999888 889999999999999999999999999999999999999987 68999999999
Q ss_pred HHHHcCCCCCCCCCCCCCCccccccccccccCCCC-cccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceeeCCeee
Q 014411 287 LRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGC-YKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPIIVDGKKV 363 (425)
Q Consensus 287 lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~Kgc-fiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~~g~~V 363 (425)
||||+|+|.||.|++++++|+|+||+++|+|+||| |+|||+++|++++ |++|||++|++++ ++..|++|+.+|+.|
T Consensus 234 lRieaG~p~~g~d~~~~~~P~e~~l~~~V~~~Kgc~yiGqe~lar~~~~-g~~rrlv~l~~~~~~~~~~g~~v~~~g~~v 312 (365)
T 1yx2_A 234 LRFEANIPLYGQELTRDITPIEAGIGFAVKHKKESDFFGKSVLSEQKEN-GAKRKLVGLEMIEKGIPRHGYEVFQNGKSV 312 (365)
T ss_dssp HHHHTTCCCBTTTBSTTCCTTTTTCGGGCCTTCSSCCTTHHHHHHHHHH-CCSEEEEEEEESSSCCCCTTCEEEETTEEE
T ss_pred hHHhcCCCcCccccCCCCCHHHCCccceecCCCCCCCcCHHHHHHHHhc-CCCeEEEEEEECCCcCCCCCCEEEECCeeE
Confidence 99999999999999999999999999999999998 9999999999975 5889999999985 577899999999999
Q ss_pred eEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCC
Q 014411 364 GKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLAR 413 (425)
Q Consensus 364 G~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~ 413 (425)
|+|||++|||+++++||||||+.+++++|++|++ |++++|+|++.||+++
T Consensus 313 G~vtS~~~sp~~~~~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~ 365 (365)
T 1yx2_A 313 GKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKKLVKAKVVKTPFYKR 365 (365)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECCCC---
T ss_pred EEEEeccccCCCCceEEEEEEChHHcCCCCEEEEEECCEEEEEEEEcCCCCCC
Confidence 9999999999999999999999999889999886 7789999999999874
No 3
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=1.5e-79 Score=678.68 Aligned_cols=388 Identities=20% Similarity=0.283 Sum_probs=357.8
Q ss_pred eecccccCccCCcchhhhcccccccceEeeecCCC---CCCCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccCC-
Q 014411 20 LHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFGN- 92 (425)
Q Consensus 20 ~~~~r~~~~~~~~~~~~~k~~e~~~~~~~~~~p~~---~gr~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~~- 92 (425)
++++||.+...+++|+++++.|+|++.|.+|||++ ++|++|+|| ||++|+++||+|.+ .| ||.+|+.
T Consensus 388 ~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~ 461 (830)
T 1pj5_A 388 CDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSP------FHARHKELGAFFLEAGGWERPYWFEAN 461 (830)
T ss_dssp TBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCT------THHHHHHTTEEEEEETTEEEEEEEGGG
T ss_pred cChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCc------CHHHHHHcCCEEEEECCEecccccCCc
Confidence 88999998877999999999999999999999999 899999999 99999999999999 46 9999964
Q ss_pred ---------------------------hHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEe
Q 014411 93 ---------------------------DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDT 145 (425)
Q Consensus 93 ---------------------------~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t 145 (425)
..+||+|+|++|+|||+|+|++|+|+|+||.+|||+++|||| .+++|+++|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~~~t~dv-~l~~g~~~y~ 540 (830)
T 1pj5_A 462 AALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTTADL-AKKPGAVTYT 540 (830)
T ss_dssp GGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBSSCC-CSCTTBEEEE
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHHhccccc-cCCCCcEEEe
Confidence 568999999999999999999999999999999999999999 8899999999
Q ss_pred eeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCC------CC-eEEEEecCcEEEEEEeCCChHHHHH
Q 014411 146 VFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFA------DK-VEIQDITKQTCLFVVVGPKSNQVMR 217 (425)
Q Consensus 146 ~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~------~~-V~i~d~t~~~~~l~l~GP~a~~vl~ 217 (425)
+|||++|+|+||+++++ .++.|+| +++.+.+++||++++... .+ |+|+|+++++++|+||||+|+++|+
T Consensus 541 ~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s~~~~~~~l~Gp~a~~~l~ 617 (830)
T 1pj5_A 541 LLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVS 617 (830)
T ss_dssp EEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHT
T ss_pred EEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEccCCEEEEEEECcCHHHHHH
Confidence 99999999998877765 5666766 445677999999996431 15 9999999999999999999999999
Q ss_pred hcccCCCCC--CCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhC----CCCCCCHHHHHHHHHHc
Q 014411 218 DLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ----GAVPMGSNAWEKLRIIK 291 (425)
Q Consensus 218 ~l~~~dl~~--~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~a----G~~~~G~~a~~~lRiE~ 291 (425)
+++..|+++ +||+.+..+.+++.++++.|++|+||+||||+++.+++..+|++|+++ |..|+|+.||++||||+
T Consensus 618 ~~~~~dl~~~~~~~~~~~~~~~~g~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~~ag~~~~~~~~g~~a~~~lRle~ 697 (830)
T 1pj5_A 618 KVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEK 697 (830)
T ss_dssp TTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHT
T ss_pred HhcCcCCccccCCCceEEEEEECCEEEEEEECcccCCCcEEEEecHHHHHHHHHHHHhhhhhcCCEEehhhhhhhhhhhc
Confidence 998888865 999999999999999999999999999999999999999999999986 47899999999999999
Q ss_pred CCCCCCCCCCCCCCccccccccccccCCCCcccHHHHHHHHhhCCCceEEEEEEEcC---CCCCCCceeeCCeeeeEEEE
Q 014411 292 GRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSA---PAEPGSPIIVDGKKVGKLTS 368 (425)
Q Consensus 292 G~~~~g~dl~~~~~P~EagL~~~V~~~KgcfiGqEal~r~~~~~~~~rrLv~l~~~~---~~~~g~~I~~~g~~VG~vtS 368 (425)
|+|.||+|++++++|+|+||+|+|+|+||||+|||+++|+++ .|++||||+|++++ ++..|++|+.+|+.||+|||
T Consensus 698 G~~~~g~d~~~~~~P~e~~l~~~v~~~kg~f~G~e~~~r~~~-~g~~rrlv~l~~~~~~~~~~~g~~v~~~g~~vG~vts 776 (830)
T 1pj5_A 698 GYRSWGTDMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRTE-EASARRLRCLTIDDGRSIVLGKEPVFYKEQAVGYVTS 776 (830)
T ss_dssp TCCCBTTTBCTTSCTTTTTCGGGCCTTSSCCTTHHHHTTCCS-TTCSEEEEEEEETTSCCCCCSCCEEEETTEEEEECCS
T ss_pred CCccccccCCCCCCHHHCCCcCeeeCCCCCCCCHHHHHHHHh-cCCCeEEEEEEEeCCCCCCCCCCEEeeCCeEEEEEec
Confidence 999999999999999999999999999999999999999986 56888999999985 36689999999999999999
Q ss_pred eeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCCC
Q 014411 369 YTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPLL 419 (425)
Q Consensus 369 ~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~~ 419 (425)
++|||+++++||||||+.++++ |++|++ |+.++|+|+++||+++++.+.+
T Consensus 777 ~~~sp~~~~~iala~v~~~~~~-g~~~~v~~~~~~~~a~v~~~pf~~~~~~r~~ 829 (830)
T 1pj5_A 777 AAYGYTVAKPIAYSYLPGTVSV-GDSVDIEYFGRRITATVTEDPLYDPKMTRLR 829 (830)
T ss_dssp EEEETTTTEEEEEEEEETTCCT-TCEEEEEETTEEEEEEEECSCSSCTTCTTTC
T ss_pred ceeccccCceEEEEEechhhcC-CCEEEEEECCEEEEEEEEcCCCcCCcccccC
Confidence 9999999999999999999988 998885 6789999999999999887665
No 4
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=7.7e-78 Score=606.34 Aligned_cols=345 Identities=23% Similarity=0.352 Sum_probs=324.9
Q ss_pred cccHHHHHHCCCeEec-CC--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEE
Q 014411 68 HDLLETVKSEGAKISG-EG--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCD 144 (425)
Q Consensus 68 ~~l~~~~~~~Ga~f~~-~G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~ 144 (425)
||||++|+++||+|++ .| ||.+|+++.+||+|+|++|+++|+|+|++|+|+|+||.+|||+++||||++|++|+++|
T Consensus 4 tpl~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y 83 (364)
T 1wos_A 4 TPLFEKHVELGAKMVDFAGWEMPLYYTSIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIY 83 (364)
T ss_dssp CTTHHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEE
T ss_pred CccHHHHHHCCCEEEeECCEEhhhhhCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcccccccCCCCCEEE
Confidence 3499999999999999 56 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCC
Q 014411 145 TVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGD 223 (425)
Q Consensus 145 t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~d 223 (425)
++|||++|+|++|++++. .+|+|+|+++++..+.+++||++++.+. +|+|+|+++++++|+|+||+|+++|+++++.|
T Consensus 84 t~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~-~V~i~d~s~~~~~l~l~Gp~a~~~L~~l~~~d 162 (364)
T 1wos_A 84 SVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNF-DVEVSNISDTTALIAFQGPKAQETLQELVEDG 162 (364)
T ss_dssp EEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCTTS-SCEEEECGGGEEEEEEESTTHHHHHGGGBSSC
T ss_pred EEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccCC-CEEEEECcCCEEEEEEECcCHHHHHHHhhCCC
Confidence 999999999998877765 5789999999999999999999997653 79999999999999999999999999999888
Q ss_pred CCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCC----CCCCCHHHHHHHHHHcCCCCCCCC
Q 014411 224 LVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKE 299 (425)
Q Consensus 224 l~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG----~~~~G~~a~~~lRiE~G~~~~g~d 299 (425)
++++||+.+..+.+++.++++.|.+|+||+||||+++.+++..+|++|+++| ..|+|..||++||||+|+|.||.|
T Consensus 163 l~~l~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~~~lRie~G~p~~g~d 242 (364)
T 1wos_A 163 LEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGRPAGLGARDVCRLEATYLLYGQD 242 (364)
T ss_dssp STTSCTTBEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCBTTT
T ss_pred ccccCccceEEEEECCeEEEEEecCCCCCCeEEEEEeHHHHHHHHHHHHhcchhcCceeCCHHHHhhhhHhcCCcCcccc
Confidence 9899999999999999999999999999999999999999999999999887 789999999999999999999999
Q ss_pred CCCCCCccccccccccccCCCCcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceeeCCeeeeEEEEeeeCCCCCC
Q 014411 300 LTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPIIVDGKKVGKLTSYTLGRKESD 377 (425)
Q Consensus 300 l~~~~~P~EagL~~~V~~~KgcfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~~g~~VG~vtS~~~s~~~~~ 377 (425)
++++++|+|+||+++|||+|| |+|||+++|++++ ++|||++|++++ ++..|++|+.+|+.||+|||++|||++++
T Consensus 243 ~~~~~~P~e~~l~~~V~~~Kg-yiGqe~lar~~~~--~~rrlv~l~~~~~~~~~~g~~v~~~g~~vG~vtS~~~sp~~g~ 319 (364)
T 1wos_A 243 MDENTNPFEVGLSWVVKLNKD-FVGKEALLKAKEK--VERKLVALELSGKRIARKGYEVLKNGERVGEITSGNFSPTLGK 319 (364)
T ss_dssp BCTTSCGGGGTCGGGCCTTSC-CTTHHHHHHHHHT--CCEEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTE
T ss_pred cCCCCCHHHCCcccccCCCCC-CcCHHHHHHHHhc--cCeEEEEEEECCCcCCCCCCEEEECCeEEEEEEeceecCcCCc
Confidence 999999999999999999998 9999999999975 899999999985 57789999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCCCEEEe---C-CeEeEEEEeCCCCCCCCCC
Q 014411 378 HFGLGYIKRKDALGGDTVTV---G-DNIVGTVVEVPFLARQSPP 417 (425)
Q Consensus 378 ~iala~v~~~~a~~g~~l~~---g-~~~~a~v~~~Pf~~~~~~~ 417 (425)
+||||||+.+ +.+|+++++ | ++++|+|+++||+++.+.+
T Consensus 320 ~iala~v~~~-~~~g~~l~v~~~~~~~~~a~v~~~Pf~~~~~~~ 362 (364)
T 1wos_A 320 SIALALVSKS-VKIGDQLGVVFPGGKLVEALVVKKPFYRGSVRR 362 (364)
T ss_dssp EEEEEEEETT-CCTTCEEEEEETTTEEEEEEEECSCSCCCSCC-
T ss_pred eEEEEEEccc-cCCCCEEEEEeCCCEEEEEEEEccCCCCccccc
Confidence 9999999999 889998886 4 6899999999999987654
No 5
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=3e-78 Score=611.53 Aligned_cols=354 Identities=18% Similarity=0.263 Sum_probs=327.5
Q ss_pred CCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhcccc
Q 014411 57 LPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (425)
Q Consensus 57 r~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~-~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tn 132 (425)
.|+|+|| ||++|+++||+|.+ .| ||.+|+ +..+||+|+|++|++||+|+|++|+|+|+||.+|||+++||
T Consensus 3 ~~~~~tp------l~~~~~~~Ga~~~~~~g~~~p~~y~~~~~~E~~a~r~~~gl~Dls~~g~i~v~G~da~~fLq~l~t~ 76 (375)
T 1wsr_A 3 EVLRRTP------LYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVG 76 (375)
T ss_dssp -CCBCCT------THHHHHHTTCEEEEETTEEEEEECSSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSS
T ss_pred CccccCc------cHHHHHHCCCEEEEECCEEechhhCCCHHHHHHHHHhCcEEEECCceEEEEEECCCHHHHHHHhccc
Confidence 4667777 99999999999999 56 999997 67999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccC----CCCeEEEEecCcEEEEEE
Q 014411 133 NFEILREGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFF----ADKVEIQDITKQTCLFVV 207 (425)
Q Consensus 133 di~~l~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~----~~~V~i~d~t~~~~~l~l 207 (425)
||+++++|+++|++|||++|+|++|+++++ .+|+|+|+++++..+.+++||++++.+ ..+|+|+|+ ++++|+|
T Consensus 77 dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~~~~~~~V~i~d~--~~~~lal 154 (375)
T 1wsr_A 77 DIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVL--DNALLAL 154 (375)
T ss_dssp CCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHHHHHTTCCCEEEEC--CCEEEEE
T ss_pred ccCcCCCCCEEEEEEECCCCeEEEEEEEEEEcCCEEEEEeCCccHHHHHHHHHHhhhhhcCCCCeEEEEEC--CEEEEEE
Confidence 999999999999999999999998877776 567999999999999999999999643 137999998 6899999
Q ss_pred eCCChHHHHHhcccCCCCCCCCceeeEEEECCee-EEEeecCccCCCeEEEEeccccHHHHHHHHHhCC-CCCCCHHHHH
Q 014411 208 VGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMP-ITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG-AVPMGSNAWE 285 (425)
Q Consensus 208 ~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~-v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG-~~~~G~~a~~ 285 (425)
+||+|+++|++++..|++++||+.++.+.+++.+ +++.|++|+||+||||+++.+++..+|++|+++| ..|+|+.||+
T Consensus 155 ~GP~a~~vL~~l~~~dl~~l~~~~~~~~~~~g~~~~~i~R~g~tGe~G~el~~~~~~a~~l~~~L~~ag~~~p~G~~a~d 234 (375)
T 1wsr_A 155 QGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARD 234 (375)
T ss_dssp ESTTHHHHHHTTCSSCGGGCCTTBEEEEEETTEEEEEEESCCSSSSSEEEEEECHHHHHHHHHHHHTSTTEEECCHHHHH
T ss_pred ECcCHHHHHHhhcCcchhhCCccceEEEEECCcceEEEEeCccCCCCeEEEEeeHHHHHHHHHHHHhcCCeEeCCHHHHH
Confidence 9999999999999888888999999999999988 9999999999999999999999999999999998 7899999999
Q ss_pred HHHHHcCCCCCCCCCCCCCCccccccccccccC---CCCcccHHHHHHHHhhCCCceEEEEEEEcC-CCCCCCcee-eCC
Q 014411 286 KLRIIKGRPAPGKELTNEFNVLEAGLWNSISLD---KGCYKGQETISRLITYDGLKQRLWGICLSA-PAEPGSPII-VDG 360 (425)
Q Consensus 286 ~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~---KgcfiGqEal~r~~~~~~~~rrLv~l~~~~-~~~~g~~I~-~~g 360 (425)
+||||+|+|.||.|++++++|+|+||+|+|+|+ ||||+|||+++|+++ +|++|||++|..+. ++..|++|+ .+|
T Consensus 235 ~lRieaG~p~~g~d~~~~~~P~Eagl~~~V~~~~~~Kg~fiGqe~lar~~~-~g~~rrlv~l~~~~~~~~~g~~v~~~~g 313 (375)
T 1wsr_A 235 SLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLK-GRVQRRRVGLMCEGAPMRAHSPILNMEG 313 (375)
T ss_dssp HHHHHTTCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHTCSTTHHHHHHHHT-TCCSCEEEEEEESSSCCCTTCEEECTTS
T ss_pred HHHHhCCcCCcCccCCCCCChhHCCchheecCCCCCCCCCcCHHHHHHHHh-cCCCEEEEEEEcCCccCCCCCEEEcCCC
Confidence 999999999999999999999999999999999 899999999999984 77899999997764 578899999 589
Q ss_pred eeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCCC
Q 014411 361 KKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPLL 419 (425)
Q Consensus 361 ~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~~ 419 (425)
+.||+|||++|||+++++||||||+.+++.+|++|++ |+.++|+|+++||+++.+++++
T Consensus 314 ~~vG~vtS~~~sp~lg~~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~~~~~~~ 375 (375)
T 1wsr_A 314 TKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTLK 375 (375)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCCC-
T ss_pred cEEEEEecceecCcCCceEEEEEEChHHcCCCCEEEEEECCEEEEEEEEccCCcCccccCCC
Confidence 9999999999999999999999999999889998886 6779999999999999877653
No 6
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=2.9e-78 Score=611.99 Aligned_cols=344 Identities=19% Similarity=0.267 Sum_probs=315.8
Q ss_pred CCCCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccc
Q 014411 55 AVLPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQST 131 (425)
Q Consensus 55 ~gr~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~t 131 (425)
++||+|+|| ||++|+++||+|.+ .| ||.+|+++.+||+|+|++|++||+|+|++|+|+|+||.+|||+++|
T Consensus 10 ~~~~~~~tp------l~~~h~~~Ga~~~~~~g~~~p~~y~~~~~E~~avr~~~gl~DlS~~g~i~v~G~DA~~fLq~l~t 83 (381)
T 1vlo_A 10 ALRAAQQTP------LYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLA 83 (381)
T ss_dssp ------CCT------THHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBS
T ss_pred CCCCcccCc------hHHHHHHcCCEEEeECCEEcccccCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcc
Confidence 899999999 99999999999999 56 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeC
Q 014411 132 ANFEIL-REGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVG 209 (425)
Q Consensus 132 ndi~~l-~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~G 209 (425)
|||+++ ++|+++|++|||++|+|++|+++++ .+|+|+|+++++..+.+++||++++.+. +|+|+| ++++++|+|||
T Consensus 84 ~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~-~V~i~d-s~~~~~lalqG 161 (381)
T 1vlo_A 84 NDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-GIEITV-RDDLSMIAVQG 161 (381)
T ss_dssp SCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHGGG-TCEEEE-CTTEEEEEEES
T ss_pred ccccccCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccCC-ceEEEE-CCCEEEEEEEC
Confidence 999999 8999999999999999998877765 5679999999999999999999997653 799999 99999999999
Q ss_pred CChHHHHHhcc----cCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCCCCCCCHHHHH
Q 014411 210 PKSNQVMRDLN----LGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWE 285 (425)
Q Consensus 210 P~a~~vl~~l~----~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG~~~~G~~a~~ 285 (425)
|+|+++|++++ +.+++++||+++... + ++++.|++|+||+||||+++.+++..+|++|+++|+.|+|+.||+
T Consensus 162 P~a~~~l~~l~~~~~~~~l~~~~~~~~~~~---g-~~~i~R~gytGe~G~ei~~~~~~a~~l~~~L~~~g~~p~G~~a~d 237 (381)
T 1vlo_A 162 PNAQAKAATLFNDAQRQAVEGMKPFFGVQA---G-DLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARD 237 (381)
T ss_dssp TTHHHHHHTTCCHHHHHHHTTCCSSBEEEE---T-TEEEECCCSSSSCEEEEEEEHHHHHHHHHHHHHTTCEECCHHHHH
T ss_pred ccHHHHHHHhhccccCCCcccCCcceeEEe---c-cEEEEecCCCCCCEEEEEEeHHHHHHHHHHHHhcCCcccCHHHHH
Confidence 99999999997 567888998888765 5 899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCCccccccccccccCCC--CcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceeeC--
Q 014411 286 KLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG--CYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPIIVD-- 359 (425)
Q Consensus 286 ~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~Kg--cfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~~-- 359 (425)
+||||+|+|.||.|++++++|+|+||+|+|+|+|| ||+|||+++|++++ |++ ||++|++++ ++..|++|+.+
T Consensus 238 ~LRiEaG~p~~g~d~~~~~~P~EagL~~~V~~~Kg~~cfiGqE~lar~~~~-G~~-rlv~l~~~~~~~~~~g~~v~~~~~ 315 (381)
T 1vlo_A 238 TLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH-GTE-KLVGLVMTEKGVLRNELPVRFTDA 315 (381)
T ss_dssp HHHHHTTCCCBTTTBCTTSCGGGTTCGGGCCCCSTTCCCTTHHHHHHHHHH-CCC-EEEEEEECSSSCCCTTCEEEEECT
T ss_pred HHHHHcCCCcccccCCCCCChhhCCccceeECCCCCCCCcCHHHHHHHHhc-CCC-EEEEEEECCCcCCCCCCEEEECCC
Confidence 99999999999999999999999999999999999 99999999999975 455 899999986 57889999987
Q ss_pred -Ce-eeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCC
Q 014411 360 -GK-KVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQS 415 (425)
Q Consensus 360 -g~-~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~ 415 (425)
|+ .||+|||++|||+++++||||||+.+ .|+++++ |++++|+|+++||+++.+
T Consensus 316 ~g~~~vG~VtS~~~sp~lg~~iala~v~~~---~g~~l~v~~~g~~~~a~v~~~Pf~~~~~ 373 (381)
T 1vlo_A 316 QGNQHEGIITSGTFSPTLGYSIALARVPEG---IGETAIVQIRNREMPVKVTKPVFVRNGK 373 (381)
T ss_dssp TCCEEEEEEEEEEEETTTTEEEEEEEECTT---CCSEEEEEETTEEEEEEEECSCCEETTE
T ss_pred CCCeeEEEEEEeeeCCCCCceEEEEEEEcC---CCCEEEEEECCEEEEEEEecCCCCCCCc
Confidence 88 99999999999999999999999988 7888876 677999999999999864
No 7
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=100.00 E-value=8.5e-78 Score=606.20 Aligned_cols=350 Identities=14% Similarity=0.221 Sum_probs=313.9
Q ss_pred ceEeeecCCCCCCCCCCCCCCCCcccHHHHHHCCCe-Eec-CC--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcc
Q 014411 45 RRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAK-ISG-EG--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGD 120 (425)
Q Consensus 45 ~~~~~~~p~~~gr~~~~~p~~~~~~l~~~~~~~Ga~-f~~-~G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~ 120 (425)
+.|+|+ +||++|+|| ||++|+++||+ |+. .| +|.+|+++.+||+|+|++|+|||+|||++|+|+|+
T Consensus 2 ~~~~~~----~~r~~~~tp------l~~~h~~~Ga~~~~~~~gw~~P~~y~~~~~E~~avR~~~glfDvSh~g~i~v~G~ 71 (369)
T 3tfi_A 2 KNFSIA----KSRRLRSTP------YTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGK 71 (369)
T ss_dssp CSCEEC----CBTTBBCCT------THHHHTTTTCCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSCEEEEEST
T ss_pred CCcccc----cccccCCCc------cHHHHHHcCCeEEeccCCEEcccccCCHHHHHHHHHcCeEEEeCCCCEEEEEECC
Confidence 345565 899999999 99999999998 677 46 99999999999999999999999999999999999
Q ss_pred hHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhccc-CCCCeEEEEe
Q 014411 121 DRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVF-FADKVEIQDI 198 (425)
Q Consensus 121 dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~-~~~~V~i~d~ 198 (425)
||.+|||+++||||++|++|+++|++|||++|+|+||+++++ .+|+|+|+++.. .+.+||+++.. ...+|+|++
T Consensus 72 DA~~fL~~l~t~dv~~L~~G~~~yt~~ln~~G~i~dD~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~~~~~V~i~~- 147 (369)
T 3tfi_A 72 DSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADS---DVIFFAKGLASGHKFDVKIVE- 147 (369)
T ss_dssp THHHHHHHHBSSCCTTCCTTBEEECCEECTTSCEEECCEEEEEETTEEEEECCSS---CHHHHHHHHHHHHTCCCEEEC-
T ss_pred CHHHHHhhhcccccccCCCCcEEEEEEECCCCCEEEEEEEEEecCCEEEEEECcH---HHHHHHHHhhhhcCCeEEEEE-
Confidence 999999999999999999999999999999999998877665 578898887654 35678887642 123799975
Q ss_pred cCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEecc-ccHHHHHHHHHhCCCC
Q 014411 199 TKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSP-AAAGSVWETLLSQGAV 277 (425)
Q Consensus 199 t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~-~~a~~l~~~L~~aG~~ 277 (425)
+++++|+||||+|+++|+++++.|++++||++++.+.++|.++++.|++|+||+||||++|+ +++.++|++|+++|.
T Consensus 148 -~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i~g~~~~i~R~gytGE~G~Ei~~~~~~~a~~lw~~L~~ag~- 225 (369)
T 3tfi_A 148 -PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGK- 225 (369)
T ss_dssp -CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEETTEEEEEESCCSSSSCEEEEEECSHHHHHHHHHHHHHHTG-
T ss_pred -CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEECCeEEEEEeCccCCCCeEEEEEecHHHHHHHHHHHHhhCc-
Confidence 68899999999999999999988888999999999999999999999999999999999998 999999999999873
Q ss_pred CCCHH--HH-HHHHHHcCCCCCCCCCCCCCCccccccccccccCCC-CcccHHHHHHHHhhCCCceEEEEEEEcCC--C-
Q 014411 278 PMGSN--AW-EKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG-CYKGQETISRLITYDGLKQRLWGICLSAP--A- 350 (425)
Q Consensus 278 ~~G~~--a~-~~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~Kg-cfiGqEal~r~~~~~~~~rrLv~l~~~~~--~- 350 (425)
++|.. ++ .+||||+|+|.||+|++++++|+|+||.|+|+|+|| ||+|||+++|++++ |++||||+|+++++ +
T Consensus 226 ~~g~~~~~~~~~lRlEaG~~~~g~d~~~~~~P~Eagl~~~V~~~Kg~~fiGqeal~r~~~~-G~~rrlvgl~~~~~~~~~ 304 (369)
T 3tfi_A 226 EFNVGPGCPNLIERIESALLSYGNDFDNNDNPFECGFDQYVSLDSDINFLGKEKLKEIKLK-GPQKKLRGVKIDIKEISL 304 (369)
T ss_dssp GGTCEEECCCHHHHHHTTCCCBTTTBCTTCCGGGTTCGGGCCCSSSCCCTTHHHHHHHHHH-CCSEEEEEEEESSSCCCC
T ss_pred ccCceeccchhhHHHhcCCCCccccCCCCCChHHCCchhhccCCCCCCCcCHHHHHHHHhc-CCCeEEEEEEECCCCCCC
Confidence 44432 12 458999999999999999999999999999999998 99999999999874 58999999999864 2
Q ss_pred -CCCCceeeCCeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCC
Q 014411 351 -EPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFL 411 (425)
Q Consensus 351 -~~g~~I~~~g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~ 411 (425)
..|++|+.+|+.||+|||++|||+++++||||||+.+++++|++|++ |++++|+|++.||+
T Consensus 305 ~~~g~~v~~~g~~vG~VTS~~~sp~lg~~iala~v~~~~~~~G~~l~v~i~g~~~~a~v~~~Pf~ 369 (369)
T 3tfi_A 305 TGSKNIYDENNNVIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI 369 (369)
T ss_dssp CSCEEEECTTCCEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSSCC
T ss_pred cCCCCEEEeCCeEEEEEEeeeECCCCCceEEEEEECHHHcCCCCEEEEEECCEEEEEEEECCCCC
Confidence 35789999999999999999999999999999999999999999986 88899999999996
No 8
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=1.3e-75 Score=596.78 Aligned_cols=352 Identities=22% Similarity=0.304 Sum_probs=328.8
Q ss_pred CCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccC
Q 014411 57 LPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (425)
Q Consensus 57 r~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tnd 133 (425)
+|+|+|| ||++|+++||+|.+ .| +|.+|+++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++|||
T Consensus 3 ~~~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~Da~~fLq~l~t~d 76 (401)
T 1v5v_A 3 QMVKRVH------IFDWHKEHARKIEEFAGWEMPIWYSSIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTND 76 (401)
T ss_dssp CCCBCCT------THHHHHHHCSEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred CccccCc------hHHHHHHcCCEEEEECCEEechhcCCHHHHHHHHHhCEEEEECCCcEEEEEECCCHHHHHHHhhccc
Confidence 5677777 99999999999999 56 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHH----Hhcc--cCCCCeEEEEecCcEEEEE
Q 014411 134 FEILREGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEML----NKYV--FFADKVEIQDITKQTCLFV 206 (425)
Q Consensus 134 i~~l~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L----~~~~--~~~~~V~i~d~t~~~~~l~ 206 (425)
|+++++|+++|++|||++|+|++|+++++ .+|+|+|+++++..+.+++|| ++++ .. .+|+|+|+++++++|+
T Consensus 77 v~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~~~~~~-~~V~i~d~s~~~~~la 155 (401)
T 1v5v_A 77 ISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFTK-LDLEIELKTYDIAMFA 155 (401)
T ss_dssp TTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHHHTTSC-CCCEEEECTTTEEEEE
T ss_pred cCcCCCCCEEEEEEECCCCcEEEEEEEEEecCCEEEEEECcccHHHHHHHHHHHHHhhhccCC-CcEEEEECcCCEEEEE
Confidence 99999999999999999999998877664 678999999999999999999 8885 44 3799999999999999
Q ss_pred EeCCChHHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEec--------------cccHHHHHHHHH
Q 014411 207 VVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMS--------------PAAAGSVWETLL 272 (425)
Q Consensus 207 l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~--------------~~~a~~l~~~L~ 272 (425)
|+||+|+++|++++..|++++||+.+..+.+++.++++.|.+|+||+||||+++ .+.+..+|++|+
T Consensus 156 l~GP~a~~vL~~l~~~dl~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~~~~~~~~~~~~~~~a~~l~~~L~ 235 (401)
T 1v5v_A 156 VQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERIL 235 (401)
T ss_dssp EESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEECCCTTCSSGGGCCCCHHHHHHHHHHH
T ss_pred EECccHHHHHHHhhCCCchhcCccceEEEEeCCeEEEEEeCCCCCCCeEEEEEeccccccccccccccHHHHHHHHHHHH
Confidence 999999999999998888889999999999999999999999999999999999 999999999999
Q ss_pred hC----CCCCCCHHHHHHHHHHcCCCCCCCCCC---------CCCCccccccccccccCCCCcccHHHHHHHHhhCCCce
Q 014411 273 SQ----GAVPMGSNAWEKLRIIKGRPAPGKELT---------NEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQ 339 (425)
Q Consensus 273 ~a----G~~~~G~~a~~~lRiE~G~~~~g~dl~---------~~~~P~EagL~~~V~~~KgcfiGqEal~r~~~~~~~~r 339 (425)
++ |..|+|..||++||||+|+|.||.|++ ++++|+|+||+++|+|+|| |+|||+++|+++++ ++|
T Consensus 236 ~ag~~~g~~p~g~~a~~~lRieaG~p~~g~d~~~~~~~~~~~~~~~P~E~gl~~~V~f~Kg-yiGqE~lar~~~~G-~~r 313 (401)
T 1v5v_A 236 EEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYWDKD-FIGKDALLKQKERG-VGR 313 (401)
T ss_dssp HHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGGGCCTTSC-CTTHHHHHHHHHHC-CCE
T ss_pred hhhhccCceecChhHhhHHHHhcCCCccccccChhhccccCcCCCChHHCCcccccCCCCC-ccCHHHHHHHHhhC-CCe
Confidence 87 578999999999999999999999999 8999999999999999998 99999999999765 558
Q ss_pred EEEEEEEcC--CCCCCCceeeCCeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCC
Q 014411 340 RLWGICLSA--PAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQ 414 (425)
Q Consensus 340 rLv~l~~~~--~~~~g~~I~~~g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~ 414 (425)
||++|++++ ++..|++|+.+|+.||+|||++|||+++++||||||+.+++++|++|++ |++++|+|+++||+++.
T Consensus 314 rlv~l~~~~~~~~~~g~~v~~~g~~vG~VtS~~~sp~~~~~iala~v~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~ 393 (401)
T 1v5v_A 314 KLVHFKMIDKGIPREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPK 393 (401)
T ss_dssp EEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSCSSCTT
T ss_pred EEEEEEECCCCCCCCCCEEEECCEEEEEEEeeeEcCCCCceEEEEEEchHHcCCCCEEEEEECCEEEEEEEEccCCcccc
Confidence 999999986 5778999999999999999999999999999999999999999998886 67899999999999987
Q ss_pred CCC
Q 014411 415 SPP 417 (425)
Q Consensus 415 ~~~ 417 (425)
+..
T Consensus 394 ~~~ 396 (401)
T 1v5v_A 394 KYG 396 (401)
T ss_dssp TSS
T ss_pred ccC
Confidence 653
No 9
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=5.1e-73 Score=634.34 Aligned_cols=398 Identities=19% Similarity=0.224 Sum_probs=354.5
Q ss_pred ccccceecccccCccCC---cchhhhcc-------------cccccceEeeec-CCC----CCC-------CCCCCCCCC
Q 014411 15 GSTSRLHNTRTTKFFQN---GVVLTQKK-------------TLSLRRRRSASI-PPT----AVL-------PFDLSPPPI 66 (425)
Q Consensus 15 ~~~~~~~~~r~~~~~~~---~~~~~~k~-------------~e~~~~~~~~~~-p~~----~gr-------~~~~~p~~~ 66 (425)
|.+|+=+++|++.-... ..+|...+ .|.=-.+|.+|| |.+ ++| |+|+||
T Consensus 502 g~~~~~~~k~~t~~g~g~cqg~~c~~~~~~~~~~~~~~~~~~~~g~~~~r~p~~P~~~~~la~r~~~~~~~~~r~tp--- 578 (965)
T 2gag_A 502 GMKSVEHIKRYTSISTANDQGKTSGVAAIGVIAAVLGIENPAAIGTTTFRAPYTPVAFAALAGRNRGDQLDPARITA--- 578 (965)
T ss_dssp TCCSHHHHHHHHCTTCSTTTTTTTHHHHHHHHHHHTTCSCGGGTCCCCCCSCSSCEEHHHHHTTCCGGGGSCCBCCT---
T ss_pred CCCCHHHHHHHhcCcccCcCCcccHHHHHHHHHHHHCcCcccccCcceecCCccCcccccccccccccccCCcccCC---
Confidence 55666666666554311 24555442 222235799999 988 788 888888
Q ss_pred CcccHHHHHHCCCeEec-CC--cccccCC--------hHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCC
Q 014411 67 DHDLLETVKSEGAKISG-EG--IVETFGN--------DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (425)
Q Consensus 67 ~~~l~~~~~~~Ga~f~~-~G--~p~~f~~--------~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~ 135 (425)
||++|+++||+|.+ .| ||.+|+. ..+||+|+|++|+|||+|+|++|+|+|+||.+|||+++||||+
T Consensus 579 ---l~~~~~~~Ga~~~~~~gw~~p~~y~~~g~~~~~~~~~E~~avr~~~gl~D~S~~g~i~v~G~da~~fL~~l~t~dv~ 655 (965)
T 2gag_A 579 ---MHSWHLSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESKAVRDSVGMLDATTLGKIEIRGKDAAEFLNRIYTNGYT 655 (965)
T ss_dssp ---THHHHHHTTCEEEEETTEEEEEECCCTTCCHHHHHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCT
T ss_pred ---CHHHHHHcCCEEeeECCEeeehhhCCCCcccchhHHHHHHHHHhCeEEEeCCceEEEEEeCcCHHHHHHHhhccCCC
Confidence 99999999999999 45 9999974 4799999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeeeeCCCCcEEEEEEEE-EeCCeEEEEECCCChHHHHHHHHhccc---CCCCeEEEEecCcEEEEEEeCCC
Q 014411 136 ILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVF---FADKVEIQDITKQTCLFVVVGPK 211 (425)
Q Consensus 136 ~l~~G~~~~t~~Ln~~G~i~d~~iv~-~~~d~~~l~~~~~~~~~~~~~L~~~~~---~~~~V~i~d~t~~~~~l~l~GP~ 211 (425)
+|++|+++|++|||++|+|+||++++ +.+|+|||+++++..+.+++||++|+. +..+|+|+|+|+++++|+||||+
T Consensus 656 ~l~~g~~~y~~~l~~~G~i~~D~~v~r~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~V~i~d~s~~~~~lal~GP~ 735 (965)
T 2gag_A 656 KLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPR 735 (965)
T ss_dssp TCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHTCTTSCCEEEECTTTEEEEEEESTT
T ss_pred cCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHHHHhcCCCCcEEEEEccCCEEEEEEECcC
Confidence 99999999999999999999887776 567899999999999999999999963 23479999999999999999999
Q ss_pred hHHHHHhcc-cCCCC--CCCCceeeEEEE-CCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCC----CCCCCHHH
Q 014411 212 SNQVMRDLN-LGDLV--GEAYGTHRHYSV-NGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNA 283 (425)
Q Consensus 212 a~~vl~~l~-~~dl~--~~p~~~~~~~~i-~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG----~~~~G~~a 283 (425)
|+++|++++ ..|++ +|||++++.+.+ ++.++++.|++|+||+||||++|.+++..+|++|+++| ..|+|+.|
T Consensus 736 a~~~l~~~~~~~dl~~~~~~~~~~~~~~~~~g~~~~~~R~~~tGe~G~ei~~~~~~~~~l~~~L~~ag~~~g~~p~G~~a 815 (965)
T 2gag_A 736 SRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGLRVWEDVYAAGEEFNITPYGTET 815 (965)
T ss_dssp HHHHHHHHCTTSCCSTTTSCTTBEEEEECTTSCEEEEECCCSSSSCEEEEEEEGGGHHHHHHHHHHHHGGGTCEECCHHH
T ss_pred HHHHHHHhhCCCCCccccCCCceeEEEEEcCCCEEEEEeCCccCCCEEEEEEeHHHHHHHHHHHHhcchhcCceeCCHHH
Confidence 999999998 45775 499999999999 99999999999999999999999999999999999876 68999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCccccccccccccCCCCcccHHHHHHHHhhCCCceEEEEEEEcC---CCCCCCceeeCC
Q 014411 284 WEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSA---PAEPGSPIIVDG 360 (425)
Q Consensus 284 ~~~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~KgcfiGqEal~r~~~~~~~~rrLv~l~~~~---~~~~g~~I~~~g 360 (425)
|++||||+|||.||+|++++++|+|+||+|+|+|+|| |+|||+++|+++++.+|||||+|++++ +++.|++|+.+|
T Consensus 816 ~~~lRiE~G~~~~g~d~~~~~~P~e~gl~~~V~~~K~-fiGqe~l~r~~~~g~~rrrlv~l~~~~~~~~~~~g~~i~~~g 894 (965)
T 2gag_A 816 MHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKD-FIGNRSYSRADNAREDRKQLVSVLPVDKSLRLPEGAALVASD 894 (965)
T ss_dssp HHHHHHHTTCCCTTTTCCSSCCTTTTTCGGGSCSSSC-CTTGGGGGSHHHHCSSCEEEEEEEESSTTCCCCTTCEEEETT
T ss_pred HHHHHHhCCccCcccccCCCCCHHHCCchhhcCCCCC-cCCHHHHHHHHhcCCCceEEEEEEEeCCCCCCCCCCEEEECC
Confidence 9999999999999999999999999999999999995 899999999998888899999999975 467899999877
Q ss_pred e--------eeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCCC
Q 014411 361 K--------KVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPLL 419 (425)
Q Consensus 361 ~--------~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~~ 419 (425)
+ .||+|||++|||+++++||||||+.+++..|++|++ |+.++|+|+++||++++..+.+
T Consensus 895 ~~~~~~~~~~vG~vtS~~~sp~lg~~iala~v~~~~~~~g~~~~v~~~~~~~~a~v~~~pf~~~~~~r~~ 964 (965)
T 2gag_A 895 ALASEGITPMEGWVTSSYDSPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLVDVVVSETVLYDPEGSRRD 964 (965)
T ss_dssp CCCBTTBCCCCEEEEEEEEETTTTEEEEEEEEETGGGCTTCEEEEEETTEEEEEEEECSCCSSTTCTTTT
T ss_pred ccccccCCcceEEEEeeeEcCCCCceEEEEEEChhhcCCCCEEEEEECCEEEEEEEEccCCcCCCCcccC
Confidence 5 899999999999999999999999999889998886 6779999999999999877654
No 10
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=100.00 E-value=3.1e-72 Score=562.93 Aligned_cols=313 Identities=25% Similarity=0.321 Sum_probs=290.8
Q ss_pred HHHHHHhhCcE-EEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECC
Q 014411 95 EALDAADNGVA-AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSP 173 (425)
Q Consensus 95 ~E~~avr~~vg-l~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~ 173 (425)
.||+|||++|+ +||+|+|++|+|+|+||.+|||+|+||||++|++|+++|++|||++|+|++|+++++.+|+|+|++++
T Consensus 27 ~e~~avr~~~g~l~DlS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~d~~~lv~~a 106 (355)
T 3ttg_A 27 SDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPA 106 (355)
T ss_dssp TTHHHHHHSCEEECCSSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEETTEEEEECCT
T ss_pred HHHHHHHhcCeEEEeCCCcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEECCEEEEEECc
Confidence 46799999999 99999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred CChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEECCeeEEE-eecC-ccC
Q 014411 174 LTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITV-GVGN-VIS 251 (425)
Q Consensus 174 ~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~-~R~~-~~g 251 (425)
+..+.+++||++|+.+..+|+|+|+++++++|+||||+|+++|++++..++++++|+... + +..+++ .|++ |+|
T Consensus 107 ~~~~~~~~~L~~~~~~~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~~~~~~~~~---~-g~~~~~~~r~GsytG 182 (355)
T 3ttg_A 107 GTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRMLK---N-GGYVLIHPTSFQHNL 182 (355)
T ss_dssp TCHHHHHHHHHHTCCTTCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCCSSEEEECT---T-SCEEEECCSBCGGGC
T ss_pred ccHHHHHHHHHHhcccCCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCccCcceeec---c-CcEEEEecCcccccC
Confidence 999999999999976224899999999999999999999999999987788887775442 3 456666 7785 999
Q ss_pred C--CeEEEEeccccHHHHHHHHHh----CCCCCCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccc-cccccCCCCccc
Q 014411 252 E--EGFSLLMSPAAAGSVWETLLS----QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW-NSISLDKGCYKG 324 (425)
Q Consensus 252 e--~G~el~~~~~~a~~l~~~L~~----aG~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~EagL~-~~V~~~KgcfiG 324 (425)
| +||||++|.+++..+|++|++ .|..|+|..||++||||+|+|.||.|++++++|+|+||. |+|+|+||||+|
T Consensus 183 E~e~G~el~~p~~~a~~l~~~L~~aG~~~g~~~~G~~a~d~lRiEaG~p~~g~d~~~~~~P~Eagl~~~~V~f~KgcfiG 262 (355)
T 3ttg_A 183 DVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGCYVG 262 (355)
T ss_dssp BCCCEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCTTTTSSTTCCTTTTTCHHHHCCSSSCCCTT
T ss_pred ccCCeEEEEEeHHHHHHHHHHHHhhhhhcCCccCCHHHHHHHHHHCCCcccccccCCCCCHHHcCCCCCeEECCCCCccC
Confidence 7 999999999999999999998 567899999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEEEEcC--CCCCCCceee----CCeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEeC
Q 014411 325 QETISRLITYDGLKQRLWGICLSA--PAEPGSPIIV----DGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVG 398 (425)
Q Consensus 325 qEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~~----~g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~g 398 (425)
||+++|+++++.+||||++|++++ ++..|++|+. +|+.||+|||++|||+++++||||||+.+++++|++|.+|
T Consensus 263 qE~lar~~~~G~~~rrlv~l~~~~~~~~~~g~~v~~~~~~~g~~vG~VtS~~~sp~lg~~iaLa~v~~~~~~~g~~l~vg 342 (355)
T 3ttg_A 263 QEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKRNFSENGTELLLP 342 (355)
T ss_dssp HHHHHHHHHTSCCCEEEEEEEECC---CCSCSSEEEECTTTCCEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEECT
T ss_pred HHHHHHHHhcCCCceEEEEEEECCCCCCCCCCEEEeccCCCCceEEEEEEeeECCCCCCEEEEEEEehhhcCCCCEEEeC
Confidence 999999998666999999999986 4778999998 8999999999999999999999999999999999999999
Q ss_pred CeEeEEEEeCCCC
Q 014411 399 DNIVGTVVEVPFL 411 (425)
Q Consensus 399 ~~~~a~v~~~Pf~ 411 (425)
+.++|+|+++||+
T Consensus 343 ~~~~a~v~~~Pf~ 355 (355)
T 3ttg_A 343 DAQLVRVHSLPFV 355 (355)
T ss_dssp TCCEEEEECSCCC
T ss_pred CeeeEEEeCCCCC
Confidence 9899999999996
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=100.00 E-value=5.6e-63 Score=492.97 Aligned_cols=300 Identities=18% Similarity=0.209 Sum_probs=267.9
Q ss_pred hCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHHHH
Q 014411 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITE 181 (425)
Q Consensus 102 ~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~~~ 181 (425)
-.|+++|+|+|++|+|+|+||.+|||+++||||.+|++|+++|++|||++|||++|+++++.+++|+|+++++..+.+++
T Consensus 29 ~~~~l~dlS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~~~~lv~~a~~~~~~~~ 108 (338)
T 1vly_A 29 LPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLT 108 (338)
T ss_dssp CCSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred CceEEEECCCcEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEeCCcEEEEecchhhHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999887779999999999999999
Q ss_pred HHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccC-CCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEec
Q 014411 182 MLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLG-DLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMS 260 (425)
Q Consensus 182 ~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~-dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~ 260 (425)
||++|+.+ .+|+|++. +++++++||||+|+++|++++.. +...++| ..+++.++ .|++ +||+||||++|
T Consensus 109 ~L~~~~~~-~~V~i~~~-~~~~~lal~Gp~a~~~l~~~~~~~~~~~~~~-----~~~~g~~~--~~~~-tge~G~el~~~ 178 (338)
T 1vly_A 109 ELKKYAVF-SKVTIAPD-DERVLLGVAGFQARAALANLFSELPSKEKQV-----VKEGATTL--LWFE-HPAERFLIVTD 178 (338)
T ss_dssp HHHTTCSS-SSCEEEEE-CSSEEEEEESTTHHHHHHTTSSCCCBTTBCE-----EEETTEEE--EEEC-SSSCEEEEEEC
T ss_pred HHHHhhhh-cceEEEEc-CceEEEEEECCcHHHHHHhhcccCCCcccce-----eecCCeEE--EEec-CCCCcEEEEec
Confidence 99999765 37999987 88999999999999999998652 3333554 45777663 3344 89999999999
Q ss_pred cccHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccc--cccccCCCCcccHHHHHHHHhhCCCc
Q 014411 261 PAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW--NSISLDKGCYKGQETISRLITYDGLK 338 (425)
Q Consensus 261 ~~~a~~l~~~L~~aG~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~EagL~--~~V~~~KgcfiGqEal~r~~~~~~~~ 338 (425)
.+++..+|++|+++ ..|+|..||++||||+|+|.||.|++++++|+|+||+ |+|+|+||||+|||+++|+++++.+|
T Consensus 179 ~~~~~~l~~~L~~~-~~~~g~~a~~~lRieaG~p~~g~d~~~~~~P~Eagl~~l~~V~f~KgcyiGqE~lar~~~~G~~r 257 (338)
T 1vly_A 179 EATANMLTDKLRGE-AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANK 257 (338)
T ss_dssp HHHHHHHHHHHBTT-BEEECHHHHHHHHHHHTCCCCCGGGTTSCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTSCC
T ss_pred hHHHHHHHHHhhhc-CccCCHHHHHHHHHHcCCccccccccCCcChhhcCccccCCCcCCCcccCCHHHHHHHHhcCCCc
Confidence 99999999999875 6899999999999999999999999999999999998 99999999999999999999877688
Q ss_pred eEEEEEEEcC--CCCCCCceee--C--CeeeeEEEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe-CCeEeEEEEeCCCC
Q 014411 339 QRLWGICLSA--PAEPGSPIIV--D--GKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV-GDNIVGTVVEVPFL 411 (425)
Q Consensus 339 rrLv~l~~~~--~~~~g~~I~~--~--g~~VG~vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~-g~~~~a~v~~~Pf~ 411 (425)
|+++.+..++ ++..|++|+. + |+.||+|||++|++ .+++||||||+.++ .+|++|++ |+..+|+|+++||+
T Consensus 258 r~l~~l~~~~~~~~~~g~~v~~~~~~~g~~vG~VtS~~~~~-~g~~iala~v~~~~-~~g~~l~v~g~~~~a~v~~~Pf~ 335 (338)
T 1vly_A 258 RALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLE-DGQVVVQVVMNNDM-EPDSIFRVRDDANTLHIEPLPYS 335 (338)
T ss_dssp EEEEEEEECCSSCCCTTCCEEEEETTEEEEECEEEEEEECT-TSCEEEEEEEETTC-CTTCCEESTTCSSCEEEECCSSC
T ss_pred eEEEEEecCCCCCCCCCCEeEeccCCCCccceEEEEEEECC-CCCEEEEEEEeccc-CCCCeEEECCCCceeEEeCCCCC
Confidence 9999998853 5788999982 3 38999999999977 89999999999988 78999998 66799999999998
Q ss_pred CCC
Q 014411 412 ARQ 414 (425)
Q Consensus 412 ~~~ 414 (425)
.++
T Consensus 336 ~~~ 338 (338)
T 1vly_A 336 LEE 338 (338)
T ss_dssp CC-
T ss_pred CCC
Confidence 763
No 12
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=99.96 E-value=1.1e-28 Score=229.33 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=135.3
Q ss_pred HhhCcEEEeCCCceEEEEEcch---HHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEE-EEEEEeCCeEEEEECCCC
Q 014411 100 ADNGVAAVDLSHFGRIRVSGDD---RIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI-AHAWIMKNAVILVVSPLT 175 (425)
Q Consensus 100 vr~~vgl~DlS~~~~i~V~G~d---A~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~-~iv~~~~d~~~l~~~~~~ 175 (425)
.|++|+|||+|+|+++.|+|+| +.++|+.+++++++. +.|...++ +|| ++.++++|+|+|++++
T Consensus 28 ~r~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~g~~l~~-~~g~v~~~---------~dDl~v~rl~~d~~llv~na-- 95 (210)
T 2gag_C 28 VAGRVELREIAFTTQISLRCAPGTQAHAALAAATGAGLPA-KVGEVAGE---------AQGTAVLWLAPDEFLATSAE-- 95 (210)
T ss_dssp BTTTBEEEECCSCEEEEEECCTTSHHHHHHHHHHSSCCCC-STTBCEEC---------TTSCEEEEEETTEEEEEESS--
T ss_pred ccCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEEc---------cCCEEEEEEcCCEEEEEeCc--
Confidence 7999999999999999999999 456667777777763 23332211 444 4556789999999987
Q ss_pred hHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCC--CCCceeeEEEECCeeEEEeecCccCCC
Q 014411 176 CSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEE 253 (425)
Q Consensus 176 ~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~--~p~~~~~~~~i~g~~v~~~R~~~~ge~ 253 (425)
.+++++||++++ ...+|.++|+|+++++|+||||+|+++|+++++.|+++ |||++++.+.+++.+|++.| +||+
T Consensus 96 ~~~d~~~l~~~l-~~~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~v~R---tGEd 171 (210)
T 2gag_C 96 NTELGGVLSAAL-GDAPGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVANIPVLLWR---TGEQ 171 (210)
T ss_dssp CTTHHHHHHHHH-TTSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEEE---EETT
T ss_pred HHHHHHHHHHhc-CcCCEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEECCEEEEEEE---eCCC
Confidence 467899999884 32258999999999999999999999999999888986 99999999999999999999 8999
Q ss_pred eEEEEeccccHHHHHHHHHhCC
Q 014411 254 GFSLLMSPAAAGSVWETLLSQG 275 (425)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG 275 (425)
||||+++++++.+||++|++++
T Consensus 172 GfEI~v~~~~A~~lw~~Ll~a~ 193 (210)
T 2gag_C 172 AWRIMPRASFTEHTVHWLVDAM 193 (210)
T ss_dssp EEEEEEBGGGHHHHHHHHHHHH
T ss_pred EEEEEEEHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 13
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=99.95 E-value=8.3e-28 Score=222.88 Aligned_cols=157 Identities=11% Similarity=0.154 Sum_probs=132.8
Q ss_pred HhhCcEEEeCCCceEEEEEcchHHHHH---hhccccCCCCCCCCceEEeeeeCCCCcE---EEE-EEEEEeCCeEEEEEC
Q 014411 100 ADNGVAAVDLSHFGRIRVSGDDRIQFL---HNQSTANFEILREGQGCDTVFVTPTART---IDI-AHAWIMKNAVILVVS 172 (425)
Q Consensus 100 vr~~vgl~DlS~~~~i~V~G~dA~~fL---q~l~tndi~~l~~G~~~~t~~Ln~~G~i---~d~-~iv~~~~d~~~l~~~ 172 (425)
.+++|||||+|+|+++.|+|+||.+|| +.+++++++ ++.|++ +|| ++.++++|+|+|+++
T Consensus 26 ~~~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~~~~l~-------------~~~g~~~~~~dDl~v~rl~~d~~llv~n 92 (206)
T 1x31_C 26 GERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLP-------------AAVGEVAGDVSGTAVLWLGPDEFLLAAE 92 (206)
T ss_dssp STTCBEEEECCSCEEEEEECCTTSHHHHHHHHHSSSCCC-------------CSTTBEEECTTSCEEEEEETTEEEEEES
T ss_pred CCCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCC-------------CCCCEEEEecCCEEEEEEcCCEEEEEcC
Confidence 457899999999999999999998555 444444444 344555 655 455578899999998
Q ss_pred CCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCC--CCCceeeEEEECCeeEEEeecCcc
Q 014411 173 PLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVI 250 (425)
Q Consensus 173 ~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~--~p~~~~~~~~i~g~~v~~~R~~~~ 250 (425)
+ .+++++||+++. ...+|.++|+|+++++|+||||+|+++|+++++.|+++ |||++++.+.+++.+|++.|++
T Consensus 93 a--~~~d~~~l~~~l-~~~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~i~Rtg-- 167 (206)
T 1x31_C 93 E--NPALLDTLQGAL-GQEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWRTG-- 167 (206)
T ss_dssp S--CTHHHHHHHHHH-TTSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEETTEEEEEEEEE--
T ss_pred c--hHHHHHHHHHhc-CcCcEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEcCeEEEEEEcC--
Confidence 7 578999999884 32258999999999999999999999999999888986 9999999999999999999966
Q ss_pred CCCeEEEEeccccHHHHHHHHHhCC
Q 014411 251 SEEGFSLLMSPAAAGSVWETLLSQG 275 (425)
Q Consensus 251 ge~G~el~~~~~~a~~l~~~L~~aG 275 (425)
|+||||+||++++..||++|+++|
T Consensus 168 -EdGfEI~v~~~~A~~lw~~L~~ag 191 (206)
T 1x31_C 168 -EQSWRILPRASFTEHTVHWLIDAM 191 (206)
T ss_dssp -TTEEEEECBGGGHHHHHHHHHHHH
T ss_pred -CCeEEEEEEHHHHHHHHHHHHHHH
Confidence 999999999999999999999976
No 14
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=96.73 E-value=0.01 Score=54.22 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=66.2
Q ss_pred CcEEEeCCC-ceEEEEEcchHHHHHhhccccCCCC--CCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHH
Q 014411 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (425)
Q Consensus 103 ~vgl~DlS~-~~~i~V~G~dA~~fLq~l~tndi~~--l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~ 179 (425)
.+.+.|+|. ++.|.|+||.|.+.|+.++..|+.. ++.+++..+.+- ++ ..++.+.+||.|-|.++.+.+..+
T Consensus 111 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~----g~-~v~v~RtGEdGfEI~v~~~~A~~l 185 (210)
T 2gag_C 111 PGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVA----NI-PVLLWRTGEQAWRIMPRASFTEHT 185 (210)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEET----TE-EEEEEEEETTEEEEEEBGGGHHHH
T ss_pred CEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEC----CE-EEEEEEeCCCEEEEEEEHHHHHHH
Confidence 588999997 9999999999999999998888875 788888776442 22 345666789999999999999999
Q ss_pred HHHHHhc
Q 014411 180 TEMLNKY 186 (425)
Q Consensus 180 ~~~L~~~ 186 (425)
+++|...
T Consensus 186 w~~Ll~a 192 (210)
T 2gag_C 186 VHWLVDA 192 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 15
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=96.59 E-value=0.01 Score=54.08 Aligned_cols=79 Identities=10% Similarity=0.042 Sum_probs=65.8
Q ss_pred CcEEEeCCC-ceEEEEEcchHHHHHhhccccCCCC--CCCCceEEeeeeCCCCcEEEEEEEEEeCCeEEEEECCCChHHH
Q 014411 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (425)
Q Consensus 103 ~vgl~DlS~-~~~i~V~G~dA~~fLq~l~tndi~~--l~~G~~~~t~~Ln~~G~i~d~~iv~~~~d~~~l~~~~~~~~~~ 179 (425)
.+.+.|+|. ++.|.|+||.|.+.|+.++..|+.. ++.+++..+.+- ++ ..++.+.+||.|-|.++.+....+
T Consensus 109 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~----g~-~v~i~RtgEdGfEI~v~~~~A~~l 183 (206)
T 1x31_C 109 PGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLA----NI-PVLLWRTGEQSWRILPRASFTEHT 183 (206)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEET----TE-EEEEEEEETTEEEEECBGGGHHHH
T ss_pred cEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEc----Ce-EEEEEEcCCCeEEEEEEHHHHHHH
Confidence 488999997 9999999999999999998888875 788888776542 22 345667789999999999999999
Q ss_pred HHHHHhc
Q 014411 180 TEMLNKY 186 (425)
Q Consensus 180 ~~~L~~~ 186 (425)
+++|...
T Consensus 184 w~~L~~a 190 (206)
T 1x31_C 184 VHWLIDA 190 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999764
No 16
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=95.90 E-value=0.00039 Score=71.90 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=43.3
Q ss_pred cceeccc--ccCcc-CCcchhhhcccccccceEeeecCCC---CCCCCCCCCCCCCcccHHHHH
Q 014411 18 SRLHNTR--TTKFF-QNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVK 75 (425)
Q Consensus 18 ~~~~~~r--~~~~~-~~~~~~~~k~~e~~~~~~~~~~p~~---~gr~~~~~p~~~~~~l~~~~~ 75 (425)
++++.|| |.... .+++| .+|+.|.|++.|.+|||++ ++||+|+|| ||+++.
T Consensus 439 ~~l~~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~------l~~~~~ 495 (497)
T 2bry_A 439 EVLAERESLYQLLSQTSPEN-MHRNVAQYGLDPATRYPNLNLRAVTPNQVQD------LYDMMD 495 (497)
T ss_dssp HHHHHHHHHHTTGGGCCTTT-SCSCGGGCCSSGGGTSSSCCTTSSCGGGGGG------GEEECS
T ss_pred chhhhHHHHhhhhhhcCHHH-HhhhHHhhcCCCcCcCCCcccccccCCccCc------cccccC
Confidence 4479999 66432 37889 9999999999999999998 899999999 998653
No 17
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.23 E-value=0.4 Score=49.09 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=38.2
Q ss_pred CCceEEEEEcchHHHHHhhcccc-----CCCCCCCCceEEeeeeCCCCcEEEEEEE
Q 014411 110 SHFGRIRVSGDDRIQFLHNQSTA-----NFEILREGQGCDTVFVTPTARTIDIAHA 160 (425)
Q Consensus 110 S~~~~i~V~G~dA~~fLq~l~tn-----di~~l~~G~~~~t~~Ln~~G~i~d~~iv 160 (425)
+.-+.|+||||+|.+.++.++.. ++...++.++.|+.+.++ |.++|..++
T Consensus 28 ~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~l~ 82 (476)
T 3gee_A 28 GALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIA 82 (476)
T ss_dssp CSEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEE
T ss_pred cEEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecC-CcccceEEE
Confidence 34678999999999999999864 233336778889988885 788877554
No 18
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=89.16 E-value=2.4 Score=42.12 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=61.8
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-+-|++. +..|.|.||.|.+.|+.++..|++.++.+..+...+ .| ..+++.| .++..|-|.++...+.
T Consensus 75 ~~gl~DvSh-~g~i~V~G~DA~~fL~~l~tndv~~l~~G~~~yt~~ln~~G~i~dD~~V~r---l~~d~~~lv~~a~~~~ 150 (393)
T 3gir_A 75 HAGLFDISH-MKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTR---LAECRFMLVANAGNAQ 150 (393)
T ss_dssp SEEEEECTT-SEEEEEESTTHHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEE---EETTEEEEEECGGGHH
T ss_pred CeEEEeCCC-cEEEEEECCCHHHHhhhhcccccccCCCCcEEEEEEECCCCcEEEEEEEEE---ecCCEEEEEECchhHH
Confidence 588889985 699999999999999999999998887777664433 22 2356666 4578899999998888
Q ss_pred HHHHHHHh
Q 014411 266 SVWETLLS 273 (425)
Q Consensus 266 ~l~~~L~~ 273 (425)
.+++.|..
T Consensus 151 ~~~~~L~~ 158 (393)
T 3gir_A 151 ADFAELEK 158 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
No 19
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=88.22 E-value=3.6 Score=40.41 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=58.5
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CCe---eEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NGM---PITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g~---~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-+.|++. ++.|.|.||.|.+.|+.++..|++.++-+..+..-+ .|. .+.+.| .++..|-|.++...+.
T Consensus 47 ~~gl~Dls~-~g~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r---~~~d~~~lv~~a~~~~ 122 (375)
T 1wsr_A 47 HCSLFDVSH-MLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTN---TSEGHLYVVSNAGCWE 122 (375)
T ss_dssp SEEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEE---CTTSSEEEEECGGGHH
T ss_pred CcEEEECCc-eEEEEEECCCHHHHHHHhcccccCcCCCCCEEEEEEECCCCeEEEEEEEEE---EcCCEEEEEeCCccHH
Confidence 588889876 699999999999999999999998887666554333 221 355555 5677899999988877
Q ss_pred HHHHHHH
Q 014411 266 SVWETLL 272 (425)
Q Consensus 266 ~l~~~L~ 272 (425)
.+++.|.
T Consensus 123 ~~~~~L~ 129 (375)
T 1wsr_A 123 KDLALMQ 129 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 20
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=87.59 E-value=2.4 Score=42.11 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=59.2
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CCe---eEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NGM---PITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g~---~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-+.|++. ++.|.|.||.|.+.|+.++..|++.++-...+..-+ .|. .+.+.| .++..|-|.++...+.
T Consensus 46 ~~gl~dls~-~~~i~v~G~Da~~fLq~l~t~dv~~l~~g~~~yt~~ln~~G~i~~D~~v~r---~~~d~~ll~~~a~~~~ 121 (401)
T 1v5v_A 46 AVGIFDVSH-MGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFN---MGNNEYLMICDSDAFE 121 (401)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEE---EETTEEEEEECTTTHH
T ss_pred CEEEEECCC-cEEEEEECCCHHHHHHHhhccccCcCCCCCEEEEEEECCCCcEEEEEEEEE---ecCCEEEEEECcccHH
Confidence 578889886 799999999999999999999998877666554332 221 355666 4677899999998888
Q ss_pred HHHHHH
Q 014411 266 SVWETL 271 (425)
Q Consensus 266 ~l~~~L 271 (425)
.+++.|
T Consensus 122 ~~~~~L 127 (401)
T 1v5v_A 122 KLYAWF 127 (401)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888877
No 21
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=87.09 E-value=3.8 Score=40.02 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=61.6
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE-C--C---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV-N--G---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i-~--g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.+-+.|++. ++.|.|.||.|.+.|+.++..|++.++-...+..-+ + | ..+.+.| .++..|-|.++...+.
T Consensus 42 ~~gl~dls~-~~~i~v~G~da~~fL~~l~t~dv~~l~~g~~~yt~~ln~~G~i~~d~~v~r---~~~d~~ll~~~a~~~~ 117 (364)
T 1wos_A 42 SVGMFDVSH-MGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYK---VSPDEALMVVNAANIE 117 (364)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEE---EETTEEEEEECGGGHH
T ss_pred CeEEEECCC-cEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEE---EeCCEEEEEECcccHH
Confidence 477889876 799999999999999999999998877666554332 2 2 1355666 4677899999999999
Q ss_pred HHHHHHHhC
Q 014411 266 SVWETLLSQ 274 (425)
Q Consensus 266 ~l~~~L~~a 274 (425)
.+++.|...
T Consensus 118 ~~~~~L~~~ 126 (364)
T 1wos_A 118 KDFNWIKSH 126 (364)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999888753
No 22
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=86.91 E-value=3.3 Score=40.44 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=61.5
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-+-|++. ++.|.|.||.|.+.|+.++..|++.++-...+...+ .| ..+.+.| .++..|-|.++...+.
T Consensus 46 ~~gl~dls~-~~~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r---~~~d~~ll~~~a~~~~ 121 (365)
T 1yx2_A 46 AAGLFDVSH-MGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQ---KGENRYLLVINASNID 121 (365)
T ss_dssp SEEEEECTT-SEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEE---EETTEEEEEECGGGHH
T ss_pred CcEEEECCC-eEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEE---EeCCEEEEEECcccHH
Confidence 578889876 799999999999999999989988877666554333 22 1355666 4677899999999998
Q ss_pred HHHHHHHhC
Q 014411 266 SVWETLLSQ 274 (425)
Q Consensus 266 ~l~~~L~~a 274 (425)
.+++.|...
T Consensus 122 ~~~~~L~~~ 130 (365)
T 1yx2_A 122 KDLAWMKEH 130 (365)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 888888764
No 23
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=85.80 E-value=3.2 Score=40.18 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=59.5
Q ss_pred eEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccHHH
Q 014411 193 VEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAGS 266 (425)
Q Consensus 193 V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a~~ 266 (425)
|.+-|++. ++.|.|.||.|.+.|+.++..|++.++-+..+..-+ .| ..+++.| .++ .|.+.++...+..
T Consensus 31 ~~l~dlS~-~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r---~~~-~~~lv~~a~~~~~ 105 (338)
T 1vly_A 31 LTLMTLDD-WALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFR---DGD-GFAWIERRSVREP 105 (338)
T ss_dssp SEEEECTT-EEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEE---ETT-EEEEEEEHHHHHH
T ss_pred eEEEECCC-cEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEE---eCC-cEEEEecchhhHH
Confidence 77889875 799999999999999999999998877666554332 22 2456666 355 8999999888888
Q ss_pred HHHHHHhC
Q 014411 267 VWETLLSQ 274 (425)
Q Consensus 267 l~~~L~~a 274 (425)
+++.|...
T Consensus 106 ~~~~L~~~ 113 (338)
T 1vly_A 106 QLTELKKY 113 (338)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888654
No 24
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=85.62 E-value=3.3 Score=40.84 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=59.7
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCC-CCceeeEEEE-C--C---eeEEEeecCccCCCeEEEEeccccH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGE-AYGTHRHYSV-N--G---MPITVGVGNVISEEGFSLLMSPAAA 264 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~-p~~~~~~~~i-~--g---~~v~~~R~~~~ge~G~el~~~~~~a 264 (425)
.|-+-|++. ++.|.|.||.|.+.|+.++..|++.+ +-...+..-+ + | ..+.+.| .++..|-|.++...+
T Consensus 55 ~~gl~DlS~-~g~i~v~G~DA~~fLq~l~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r---~~~d~~~lv~~a~~~ 130 (381)
T 1vlo_A 55 DAGMFDVSH-MTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYY---FTEDFFRLVVNSATR 130 (381)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEE---EETTEEEEEECGGGH
T ss_pred CeEEEECCC-cEEEEEECCCHHHHHHHhccccccccCCCCCEEEEEEECCCCcEEEEEEEEE---EeCCEEEEEECcccH
Confidence 577889876 79999999999999999998998887 6666554332 2 2 1355666 467889999999888
Q ss_pred HHHHHHHHh
Q 014411 265 GSVWETLLS 273 (425)
Q Consensus 265 ~~l~~~L~~ 273 (425)
..+++.|..
T Consensus 131 ~~~~~~L~~ 139 (381)
T 1vlo_A 131 EKDLSWITQ 139 (381)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 25
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=83.92 E-value=3 Score=42.30 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=40.7
Q ss_pred CCceEEEEEcchHHHHHhhcccc-CCCCCCCCceEEeeeeCC-CCcEEEEEEEE
Q 014411 110 SHFGRIRVSGDDRIQFLHNQSTA-NFEILREGQGCDTVFVTP-TARTIDIAHAW 161 (425)
Q Consensus 110 S~~~~i~V~G~dA~~fLq~l~tn-di~~l~~G~~~~t~~Ln~-~G~i~d~~iv~ 161 (425)
+.-+.|+||||+|.+.++.++.. +....++.++.|+.+.++ +|.++|..++.
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~ 75 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLL 75 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEE
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEE
Confidence 45688999999999999999864 333446788999999995 68888875553
No 26
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=82.05 E-value=10 Score=38.41 Aligned_cols=80 Identities=11% Similarity=-0.037 Sum_probs=52.0
Q ss_pred CcEEEEEEeCCChHHHHHhcccC-CCCCCCCceeeEEEE-C---C-----eeEEEee--cCccCCCeEEEEeccc--cHH
Q 014411 200 KQTCLFVVVGPKSNQVMRDLNLG-DLVGEAYGTHRHYSV-N---G-----MPITVGV--GNVISEEGFSLLMSPA--AAG 265 (425)
Q Consensus 200 ~~~~~l~l~GP~a~~vl~~l~~~-dl~~~p~~~~~~~~i-~---g-----~~v~~~R--~~~~ge~G~el~~~~~--~a~ 265 (425)
...+++-|.||+|.+++++++.. .+...+......-.+ + + .-+...+ .|||||+-.||+|.-. ...
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~ 101 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQ 101 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHH
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHH
Confidence 36788999999999999998753 222222222211222 1 2 1233333 4899999999999764 346
Q ss_pred HHHHHHHhCCCCCC
Q 014411 266 SVWETLLSQGAVPM 279 (425)
Q Consensus 266 ~l~~~L~~aG~~~~ 279 (425)
.+.++|++.|++++
T Consensus 102 ~~l~~~~~~g~r~A 115 (462)
T 3geh_A 102 QVLQLCLESGARLA 115 (462)
T ss_dssp HHHHHHHHTTCEEC
T ss_pred HHHHHHHHCCCeec
Confidence 68888888887554
No 27
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=81.27 E-value=1.9 Score=44.15 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=40.1
Q ss_pred CCceEEEEEcchHHHHHhhccc-cCCCCCCCCceEEeeeeCCCCcEEEEEEEEE
Q 014411 110 SHFGRIRVSGDDRIQFLHNQST-ANFEILREGQGCDTVFVTPTARTIDIAHAWI 162 (425)
Q Consensus 110 S~~~~i~V~G~dA~~fLq~l~t-ndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~ 162 (425)
+.-+.|+|+||+|.+.++.++. .+.+ ++..+.|+.+.+ +|.++|..++..
T Consensus 46 ~~i~iiRiSG~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~iDe~~v~~ 96 (482)
T 1xzp_A 46 GAIAILRLSGPDSWKIVQKHLRTRSKI--VPRKAIHGWIHE-NGEDVDEVVVVF 96 (482)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSCC--CBTBCEEEEECC-SSCCCCEEEEEE
T ss_pred ceEEEEEcccHHHHHHHHHHhcCCCCC--CCceEEEEEEec-CCeeeeEEEEEE
Confidence 3567899999999999999985 2343 678889999999 899988765543
No 28
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=77.18 E-value=7 Score=38.09 Aligned_cols=77 Identities=9% Similarity=0.055 Sum_probs=60.0
Q ss_pred CeE-EEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE---CC---eeEEEeecCccCCCeEEEEeccccH
Q 014411 192 KVE-IQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAA 264 (425)
Q Consensus 192 ~V~-i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i---~g---~~v~~~R~~~~ge~G~el~~~~~~a 264 (425)
+|- +-|++. +..|.|.||.|.+.|+.++..|++.++-...+..-+ .| ..+++.|. + ..|-|.++...+
T Consensus 35 ~~g~l~DlS~-~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~---~-d~~~lv~~a~~~ 109 (355)
T 3ttg_A 35 KFGLFYPSVS-RPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNF---E-DKIALFPPAGTR 109 (355)
T ss_dssp SCEEECCSSC-CCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEE---T-TEEEEECCTTCH
T ss_pred cCeEEEeCCC-cEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEE---C-CEEEEEECcccH
Confidence 466 778874 699999999999999999999998887766664433 22 24666774 3 589999999998
Q ss_pred HHHHHHHHh
Q 014411 265 GSVWETLLS 273 (425)
Q Consensus 265 ~~l~~~L~~ 273 (425)
..+++.|..
T Consensus 110 ~~~~~~L~~ 118 (355)
T 3ttg_A 110 EEFVNHLKK 118 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888865
No 29
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=76.88 E-value=9.5 Score=42.30 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=60.0
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHHhcccCCCCCCCCceeeEEEE-C--C---eeEEEeecCccCCCeEEEEeccccHH
Q 014411 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV-N--G---MPITVGVGNVISEEGFSLLMSPAAAG 265 (425)
Q Consensus 192 ~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~~~p~~~~~~~~i-~--g---~~v~~~R~~~~ge~G~el~~~~~~a~ 265 (425)
.|-+-|++. +..|.|.||.|.+.|+.++..|++.++-+..+..-+ + | ..+.+.| .++..|-|.++...+.
T Consensus 623 ~~gl~D~S~-~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r---~~~~~~~l~~~~~~~~ 698 (965)
T 2gag_A 623 SVGMLDATT-LGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLR---LAEDRFLLHTTTGGAA 698 (965)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEE---EETTEEEEEECTTTHH
T ss_pred CeEEEeCCc-eEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEE---EeCCEEEEEECcccHH
Confidence 588889875 799999999999999999999999887776664433 2 2 1355666 5678899999988888
Q ss_pred HHHHHHH
Q 014411 266 SVWETLL 272 (425)
Q Consensus 266 ~l~~~L~ 272 (425)
.+++.|.
T Consensus 699 ~~~~~l~ 705 (965)
T 2gag_A 699 DVLDWLE 705 (965)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 30
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=74.00 E-value=12 Score=36.59 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=57.7
Q ss_pred hCcEEEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEEEE---eCCeEEEEECC-CChH
Q 014411 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSP-LTCS 177 (425)
Q Consensus 102 ~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv~~---~~d~~~l~~~~-~~~~ 177 (425)
..|-+.+ ..++.|.|.||.|.+.|+.++..|++.++..+...+.+ .| + ...+.+. .++.|-|.++. ....
T Consensus 141 ~~V~i~~-~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i---~g-~-~~~i~R~gytGE~G~Ei~~~~~~~a~ 214 (369)
T 3tfi_A 141 FDVKIVE-PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDF---EG-T-KHLIARSGWSKQGGYEVYVENTQSGQ 214 (369)
T ss_dssp CCCEEEC-CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEE---TT-E-EEEEESCCSSSSCEEEEEECSHHHHH
T ss_pred CeEEEEE-CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEE---CC-e-EEEEEeCccCCCCeEEEEEecHHHHH
Confidence 4677776 67899999999999999999888888777666554333 22 1 2223332 57899999997 7778
Q ss_pred HHHHHHHhc
Q 014411 178 SITEMLNKY 186 (425)
Q Consensus 178 ~~~~~L~~~ 186 (425)
.+++.|...
T Consensus 215 ~lw~~L~~a 223 (369)
T 3tfi_A 215 KLYDHLFEV 223 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888877654
No 31
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=64.21 E-value=12 Score=40.59 Aligned_cols=79 Identities=14% Similarity=0.035 Sum_probs=57.3
Q ss_pred C-cEEEeCCC-ceEEEEEcchHHHHHhhccccCCCC--CCCCceEEeeeeCCCCcEEEEEEEEE---eCCeEEEEECCCC
Q 014411 103 G-VAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLT 175 (425)
Q Consensus 103 ~-vgl~DlS~-~~~i~V~G~dA~~fLq~l~tndi~~--l~~G~~~~t~~Ln~~G~i~d~~iv~~---~~d~~~l~~~~~~ 175 (425)
. |-+.|+|. ++.|.|.||.|.+.|+.++..|+.. ++..++..+.+ .| + ...+.+. .++.|-|.++...
T Consensus 591 ~~v~i~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~---~g-~-~~~~~r~~~tge~g~ei~~~~~~ 665 (830)
T 1pj5_A 591 DWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVI---GG-I-PVTAMRLSYVGELGWELYTSADN 665 (830)
T ss_dssp CCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE---TT-E-EEEEECCCTTSSSEEEEEEEHHH
T ss_pred CeEEEEEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEE---CC-E-EEEEEECcccCCCcEEEEecHHH
Confidence 5 99999975 8999999999999999998888753 56666554332 22 1 2233333 3788999998877
Q ss_pred hHHHHHHHHhc
Q 014411 176 CSSITEMLNKY 186 (425)
Q Consensus 176 ~~~~~~~L~~~ 186 (425)
...+++.|...
T Consensus 666 ~~~l~~~l~~a 676 (830)
T 1pj5_A 666 GQRLWDALWQA 676 (830)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77888877543
No 32
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=60.40 E-value=41 Score=34.07 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=49.8
Q ss_pred cEEEEEEeCCChHHHHHhccc-CCCCCCCC-ceeeEE-----EECCeeEEEee--cCccCCCeEEEEecccc--HHHHHH
Q 014411 201 QTCLFVVVGPKSNQVMRDLNL-GDLVGEAY-GTHRHY-----SVNGMPITVGV--GNVISEEGFSLLMSPAA--AGSVWE 269 (425)
Q Consensus 201 ~~~~l~l~GP~a~~vl~~l~~-~dl~~~p~-~~~~~~-----~i~g~~v~~~R--~~~~ge~G~el~~~~~~--a~~l~~ 269 (425)
..+++-|.||+|.+++++++. ..+. -|. .....+ .++..-+.+.+ .||+||+-.|++|.-.. ...+.+
T Consensus 47 ~i~iiRiSG~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l~ 125 (482)
T 1xzp_A 47 AIAILRLSGPDSWKIVQKHLRTRSKI-VPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD 125 (482)
T ss_dssp SCEEEEEESSSHHHHHHTTEEESSCC-CBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHHHHH
T ss_pred eEEEEEcccHHHHHHHHHHhcCCCCC-CCceEEEEEEecCCeeeeEEEEEEEeCCCcCCCCCEeeecCcCcHHHHHHHHH
Confidence 578899999999999999974 2221 111 111111 12222333333 58999999999987543 356778
Q ss_pred HHHhCCCCCCC
Q 014411 270 TLLSQGAVPMG 280 (425)
Q Consensus 270 ~L~~aG~~~~G 280 (425)
.|++.|+.++.
T Consensus 126 ~l~~~g~r~A~ 136 (482)
T 1xzp_A 126 LFLKSGARMAE 136 (482)
T ss_dssp HHHTTTCEECC
T ss_pred HHHHcCCEeCC
Confidence 88887764443
Done!