Query 014413
Match_columns 425
No_of_seqs 125 out of 672
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 2E-113 5E-118 875.4 38.8 367 24-422 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.7 0.0033 7E-08 61.0 18.3 193 106-376 33-227 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.7 0.32 7E-06 46.0 19.9 57 121-183 35-91 (231)
4 TIGR00740 methyltransferase, p 96.7 0.12 2.6E-06 49.6 16.9 82 132-229 54-135 (239)
5 PLN02233 ubiquinone biosynthes 96.1 0.95 2.1E-05 44.3 19.8 98 119-229 61-158 (261)
6 TIGR02716 C20_methyl_CrtF C-20 95.1 0.43 9.2E-06 47.6 13.2 61 120-192 138-198 (306)
7 COG2226 UbiE Methylase involve 94.8 2.6 5.7E-05 41.1 17.4 190 108-376 27-221 (238)
8 PF13649 Methyltransf_25: Meth 94.7 0.16 3.4E-06 41.9 7.5 80 135-229 1-81 (101)
9 PRK06202 hypothetical protein; 94.4 0.97 2.1E-05 43.0 13.4 87 127-229 56-142 (232)
10 PLN02336 phosphoethanolamine N 93.6 4.8 0.0001 42.6 18.0 92 119-229 254-345 (475)
11 PF12847 Methyltransf_18: Meth 93.4 0.3 6.6E-06 40.3 7.0 51 134-192 4-55 (112)
12 PTZ00098 phosphoethanolamine N 93.3 4.2 9E-05 39.8 15.7 58 118-183 39-96 (263)
13 TIGR03438 probable methyltrans 92.9 1.9 4.1E-05 43.1 12.9 95 122-229 56-151 (301)
14 PRK08317 hypothetical protein; 92.8 7.6 0.00016 36.0 16.3 53 123-181 11-63 (241)
15 PF13847 Methyltransf_31: Meth 92.7 0.9 2E-05 40.2 9.3 83 131-229 3-86 (152)
16 PF01209 Ubie_methyltran: ubiE 92.7 0.51 1.1E-05 45.7 8.2 92 122-229 38-129 (233)
17 PRK14103 trans-aconitate 2-met 92.6 1.3 2.8E-05 42.8 11.1 52 121-179 19-70 (255)
18 smart00138 MeTrc Methyltransfe 92.6 0.29 6.2E-06 48.2 6.5 55 128-182 96-152 (264)
19 PF13489 Methyltransf_23: Meth 92.6 1.3 2.8E-05 38.7 10.1 40 129-177 20-59 (161)
20 TIGR01934 MenG_MenH_UbiE ubiqu 92.5 8.6 0.00019 35.5 18.8 60 118-183 26-85 (223)
21 TIGR03587 Pse_Me-ase pseudamin 92.3 4.1 8.9E-05 38.4 13.7 41 134-181 46-86 (204)
22 PLN02396 hexaprenyldihydroxybe 91.4 2.9 6.3E-05 42.5 12.3 77 133-229 133-211 (322)
23 PRK05785 hypothetical protein; 91.3 5.1 0.00011 38.4 13.3 71 133-229 53-123 (226)
24 PRK11207 tellurite resistance 90.5 3.6 7.8E-05 38.4 11.2 54 120-182 19-72 (197)
25 PRK01683 trans-aconitate 2-met 90.2 3.1 6.8E-05 40.0 10.9 56 119-181 19-74 (258)
26 TIGR00477 tehB tellurite resis 88.9 4.2 9.2E-05 37.8 10.4 65 118-195 17-81 (195)
27 TIGR02072 BioC biotin biosynth 88.5 12 0.00025 34.9 13.2 45 132-183 35-79 (240)
28 PLN02336 phosphoethanolamine N 88.5 7.1 0.00015 41.3 13.0 49 121-178 27-75 (475)
29 PRK12335 tellurite resistance 88.4 5 0.00011 39.7 11.1 63 121-196 110-172 (287)
30 PRK00216 ubiE ubiquinone/menaq 88.0 23 0.00049 33.0 18.0 55 123-183 43-97 (239)
31 PF08241 Methyltransf_11: Meth 87.0 1.4 3.1E-05 34.5 5.1 73 136-229 1-73 (95)
32 PRK11036 putative S-adenosyl-L 86.9 6 0.00013 38.2 10.4 91 121-229 35-125 (255)
33 TIGR02021 BchM-ChlM magnesium 86.7 7.7 0.00017 36.4 10.8 61 115-184 37-99 (219)
34 TIGR03439 methyl_EasF probable 86.6 11 0.00025 38.2 12.5 70 122-200 69-139 (319)
35 TIGR02081 metW methionine bios 86.0 8.7 0.00019 35.4 10.6 47 122-178 6-52 (194)
36 PF09243 Rsm22: Mitochondrial 85.4 7.5 0.00016 38.5 10.4 64 115-185 13-80 (274)
37 PF03291 Pox_MCEL: mRNA cappin 83.5 6.6 0.00014 40.1 9.2 93 131-231 62-160 (331)
38 PLN02585 magnesium protoporphy 83.4 10 0.00022 38.5 10.4 45 131-184 144-188 (315)
39 PF02353 CMAS: Mycolic acid cy 81.9 12 0.00025 37.2 10.0 115 119-291 50-165 (273)
40 PLN02244 tocopherol O-methyltr 81.0 20 0.00042 36.5 11.7 80 131-229 118-199 (340)
41 PF03848 TehB: Tellurite resis 80.9 32 0.0007 32.4 12.2 88 121-229 20-107 (192)
42 PF08242 Methyltransf_12: Meth 80.7 0.7 1.5E-05 37.6 0.8 44 136-186 1-44 (99)
43 COG2230 Cfa Cyclopropane fatty 79.5 27 0.00059 35.0 11.7 95 115-229 56-150 (283)
44 TIGR00138 gidB 16S rRNA methyl 78.6 26 0.00056 32.3 10.7 61 133-205 44-104 (181)
45 PRK11705 cyclopropane fatty ac 78.3 25 0.00053 36.6 11.5 55 120-182 156-210 (383)
46 PRK00107 gidB 16S rRNA methylt 76.5 63 0.0014 30.1 12.7 52 133-195 47-99 (187)
47 PRK00274 ksgA 16S ribosomal RN 75.8 11 0.00024 37.1 7.8 65 109-182 15-84 (272)
48 TIGR01983 UbiG ubiquinone bios 75.0 71 0.0015 29.6 13.4 43 132-183 46-88 (224)
49 smart00828 PKS_MT Methyltransf 74.3 20 0.00044 33.4 9.0 43 134-183 2-44 (224)
50 PRK10258 biotin biosynthesis p 73.8 48 0.001 31.7 11.6 54 119-181 30-83 (251)
51 PF13679 Methyltransf_32: Meth 73.6 9.1 0.0002 33.7 6.0 54 127-184 21-75 (141)
52 TIGR00452 methyltransferase, p 72.9 37 0.0008 34.5 10.8 49 121-177 111-159 (314)
53 COG4106 Tam Trans-aconitate me 72.4 13 0.00028 36.2 6.9 113 124-299 23-136 (257)
54 COG2227 UbiG 2-polyprenyl-3-me 70.1 18 0.00038 35.5 7.4 79 131-229 59-137 (243)
55 PRK06922 hypothetical protein; 69.3 40 0.00087 37.8 10.8 82 133-230 420-501 (677)
56 PRK15068 tRNA mo(5)U34 methylt 68.6 59 0.0013 32.9 11.3 47 122-176 113-159 (322)
57 PF12147 Methyltransf_20: Puta 68.5 1.3E+02 0.0029 30.5 13.3 127 128-305 132-262 (311)
58 PRK11873 arsM arsenite S-adeno 68.0 76 0.0017 30.7 11.7 44 134-183 80-123 (272)
59 PRK07580 Mg-protoporphyrin IX 68.0 46 0.001 31.0 9.8 45 131-184 63-107 (230)
60 PRK10909 rsmD 16S rRNA m(2)G96 66.4 75 0.0016 29.9 10.8 45 133-185 55-99 (199)
61 TIGR02085 meth_trns_rumB 23S r 66.3 82 0.0018 32.5 12.0 41 134-183 236-276 (374)
62 TIGR02469 CbiT precorrin-6Y C5 64.2 21 0.00045 29.4 6.0 45 134-185 22-66 (124)
63 PRK09489 rsmC 16S ribosomal RN 62.9 1.3E+02 0.0029 30.7 12.7 67 119-196 184-250 (342)
64 PF00891 Methyltransf_2: O-met 62.7 1.1E+02 0.0023 29.0 11.4 45 121-172 90-134 (241)
65 smart00650 rADc Ribosomal RNA 61.1 25 0.00053 31.7 6.3 54 121-183 3-56 (169)
66 PRK15001 SAM-dependent 23S rib 59.9 86 0.0019 32.7 10.8 59 120-185 217-275 (378)
67 PRK04148 hypothetical protein; 59.5 52 0.0011 29.3 7.8 44 123-174 8-51 (134)
68 PLN02446 (5-phosphoribosyl)-5- 56.6 14 0.00031 36.5 4.2 27 128-155 55-81 (262)
69 PRK05134 bifunctional 3-demeth 56.5 1.7E+02 0.0038 27.3 15.1 54 130-196 47-100 (233)
70 PRK11088 rrmA 23S rRNA methylt 56.5 75 0.0016 31.0 9.3 80 96-181 52-131 (272)
71 PRK07402 precorrin-6B methylas 56.1 40 0.00086 31.0 6.9 63 116-185 25-87 (196)
72 PRK03522 rumB 23S rRNA methylu 56.0 1.5E+02 0.0031 29.8 11.4 51 133-196 175-226 (315)
73 PRK13255 thiopurine S-methyltr 54.5 2E+02 0.0043 27.4 12.2 36 133-177 39-74 (218)
74 PRK14896 ksgA 16S ribosomal RN 52.3 67 0.0014 31.2 8.1 52 123-183 21-72 (258)
75 PLN02490 MPBQ/MSBQ methyltrans 52.0 1E+02 0.0023 31.6 9.7 44 131-181 113-156 (340)
76 PRK14968 putative methyltransf 49.6 37 0.0008 30.4 5.5 43 133-184 25-67 (188)
77 PRK13944 protein-L-isoaspartat 49.3 46 0.001 31.1 6.2 57 122-184 63-119 (205)
78 PRK08287 cobalt-precorrin-6Y C 48.2 57 0.0012 29.7 6.6 46 133-185 33-78 (187)
79 PTZ00338 dimethyladenosine tra 47.7 78 0.0017 31.7 7.9 55 122-185 27-81 (294)
80 TIGR03840 TMPT_Se_Te thiopurin 47.7 1.8E+02 0.004 27.5 10.1 36 133-177 36-71 (213)
81 PRK10507 bifunctional glutathi 47.3 45 0.00097 37.1 6.5 86 139-229 354-444 (619)
82 PRK09328 N5-glutamine S-adenos 47.1 51 0.0011 31.8 6.3 49 128-183 105-153 (275)
83 TIGR00536 hemK_fam HemK family 46.3 54 0.0012 32.3 6.5 44 133-183 116-159 (284)
84 TIGR00091 tRNA (guanine-N(7)-) 44.4 64 0.0014 29.8 6.3 46 132-184 17-62 (194)
85 PF05175 MTS: Methyltransferas 43.3 44 0.00095 30.2 4.9 63 119-192 19-81 (170)
86 PF05401 NodS: Nodulation prot 43.2 1.1E+02 0.0023 29.3 7.6 63 122-196 33-96 (201)
87 TIGR00537 hemK_rel_arch HemK-r 43.2 58 0.0013 29.4 5.7 41 134-183 22-62 (179)
88 PRK00811 spermidine synthase; 42.5 3.1E+02 0.0067 27.1 11.2 47 134-187 79-125 (283)
89 PRK00050 16S rRNA m(4)C1402 me 42.4 62 0.0013 32.6 6.2 58 121-184 9-66 (296)
90 PHA03411 putative methyltransf 42.4 51 0.0011 33.0 5.5 72 102-181 34-107 (279)
91 TIGR02129 hisA_euk phosphoribo 42.3 33 0.00072 33.8 4.2 27 128-158 50-76 (253)
92 PRK13168 rumA 23S rRNA m(5)U19 41.2 2.1E+02 0.0046 30.1 10.4 51 124-183 290-340 (443)
93 COG1341 Predicted GTPase or GT 41.0 3.2E+02 0.007 28.8 11.3 67 271-344 188-254 (398)
94 TIGR00755 ksgA dimethyladenosi 40.8 62 0.0013 31.2 5.8 53 121-182 19-71 (253)
95 COG2890 HemK Methylase of poly 40.2 46 0.001 33.1 4.9 47 134-191 113-159 (280)
96 PRK11727 23S rRNA mA1618 methy 40.1 1E+02 0.0022 31.5 7.4 50 128-184 111-160 (321)
97 cd02440 AdoMet_MTases S-adenos 38.9 1.7E+02 0.0036 22.0 9.3 39 134-180 1-39 (107)
98 PRK00121 trmB tRNA (guanine-N( 38.6 62 0.0013 30.2 5.3 47 131-184 40-86 (202)
99 PRK00312 pcm protein-L-isoaspa 37.8 86 0.0019 29.1 6.1 54 123-185 70-123 (212)
100 PRK00517 prmA ribosomal protei 37.8 69 0.0015 30.9 5.6 61 115-183 101-163 (250)
101 COG1093 SUI2 Translation initi 37.1 73 0.0016 31.6 5.5 39 159-197 219-261 (269)
102 COG2242 CobL Precorrin-6B meth 35.9 1E+02 0.0022 29.1 6.1 51 126-186 29-82 (187)
103 TIGR00080 pimt protein-L-isoas 35.7 98 0.0021 29.0 6.2 57 122-184 68-124 (215)
104 TIGR00406 prmA ribosomal prote 35.4 84 0.0018 31.1 5.9 60 116-183 142-203 (288)
105 COG2813 RsmC 16S RNA G1207 met 35.3 83 0.0018 31.9 5.8 61 118-185 145-205 (300)
106 KOG2904 Predicted methyltransf 34.7 62 0.0014 32.6 4.7 60 122-192 136-198 (328)
107 COG1500 Predicted exosome subu 34.7 1.2E+02 0.0027 29.4 6.6 79 310-391 71-152 (234)
108 PF01135 PCMT: Protein-L-isoas 33.6 1.2E+02 0.0025 28.9 6.3 67 122-195 63-129 (209)
109 TIGR03534 RF_mod_PrmC protein- 33.0 82 0.0018 29.6 5.3 45 132-183 88-132 (251)
110 PRK14966 unknown domain/N5-glu 32.7 1.1E+02 0.0024 32.5 6.4 51 134-195 254-304 (423)
111 PRK14121 tRNA (guanine-N(7)-)- 32.5 86 0.0019 32.9 5.6 54 123-183 114-167 (390)
112 PF02056 Glyco_hydro_4: Family 31.7 2.5E+02 0.0053 26.3 8.0 58 143-200 9-66 (183)
113 COG0123 AcuC Deacetylases, inc 31.3 38 0.00083 34.8 2.7 21 129-149 152-174 (340)
114 PF11455 DUF3018: Protein of 31.2 30 0.00064 27.1 1.5 21 358-378 3-23 (65)
115 PRK13942 protein-L-isoaspartat 31.1 1.4E+02 0.0029 28.1 6.3 57 123-185 68-124 (212)
116 PRK03646 dadX alanine racemase 30.4 1.1E+02 0.0025 31.3 6.1 53 131-187 117-177 (355)
117 PLN03075 nicotianamine synthas 30.3 5.8E+02 0.012 25.8 10.9 44 134-182 126-169 (296)
118 TIGR03704 PrmC_rel_meth putati 29.7 1.3E+02 0.0028 29.2 6.1 46 132-184 87-132 (251)
119 TIGR00479 rumA 23S rRNA (uraci 29.6 4.1E+02 0.0089 27.7 10.2 43 133-184 294-336 (431)
120 KOG1165 Casein kinase (serine/ 28.8 33 0.00071 35.6 1.7 13 129-141 164-176 (449)
121 PTZ00063 histone deacetylase; 28.7 41 0.0009 35.8 2.5 27 122-148 156-184 (436)
122 PRK14024 phosphoribosyl isomer 28.1 60 0.0013 31.3 3.4 30 128-158 44-75 (241)
123 COG4301 Uncharacterized conser 28.0 1.5E+02 0.0033 29.6 6.0 77 118-201 60-141 (321)
124 PRK13587 1-(5-phosphoribosyl)- 27.8 86 0.0019 30.2 4.4 33 126-158 42-76 (234)
125 PRK11805 N5-glutamine S-adenos 27.5 1.1E+02 0.0025 30.6 5.4 45 133-184 135-179 (307)
126 TIGR03533 L3_gln_methyl protei 26.1 1.3E+02 0.0028 29.8 5.5 45 132-183 122-166 (284)
127 TIGR01626 ytfJ_HI0045 conserve 26.0 1.3E+02 0.0027 28.3 5.0 91 131-227 59-160 (184)
128 COG0030 KsgA Dimethyladenosine 25.7 3.2E+02 0.0069 27.1 8.0 55 120-183 19-73 (259)
129 cd05298 GH4_GlvA_pagL_like Gly 25.6 1.7E+02 0.0037 31.2 6.4 54 147-200 14-67 (437)
130 PF07521 RMMBL: RNA-metabolisi 25.1 1.2E+02 0.0025 21.3 3.6 20 271-290 19-38 (43)
131 PRK00377 cbiT cobalt-precorrin 24.9 2.2E+02 0.0048 26.2 6.5 48 132-185 41-88 (198)
132 TIGR01716 RGG_Cterm transcript 24.6 1.2E+02 0.0026 28.2 4.6 54 24-77 127-181 (220)
133 KOG3820 Aromatic amino acid hy 24.5 1.2E+02 0.0027 31.9 4.9 74 134-207 333-432 (461)
134 cd00635 PLPDE_III_YBL036c_like 24.5 2.6E+02 0.0056 26.3 7.0 63 132-198 118-197 (222)
135 PHA03412 putative methyltransf 24.5 95 0.0021 30.5 4.0 46 132-181 50-95 (241)
136 TIGR00563 rsmB ribosomal RNA s 24.4 1.7E+02 0.0037 30.7 6.2 67 118-195 225-291 (426)
137 PF02527 GidB: rRNA small subu 24.3 1.6E+02 0.0036 27.4 5.5 59 134-204 51-109 (184)
138 PRK14902 16S rRNA methyltransf 22.8 2.2E+02 0.0047 30.0 6.7 63 120-192 239-301 (444)
139 PRK04266 fibrillarin; Provisio 22.6 1.9E+02 0.0042 27.7 5.7 58 117-181 55-115 (226)
140 COG2263 Predicted RNA methylas 22.6 3.6E+02 0.0078 25.7 7.3 75 133-227 47-121 (198)
141 PTZ00346 histone deacetylase; 22.3 64 0.0014 34.3 2.5 40 272-317 296-335 (429)
142 PF15609 PRTase_2: Phosphoribo 22.2 4.2E+02 0.009 25.2 7.6 70 126-199 117-187 (191)
143 cd05197 GH4_glycoside_hydrolas 21.9 2.1E+02 0.0045 30.3 6.3 55 146-200 12-67 (425)
144 PRK14967 putative methyltransf 21.7 2.1E+02 0.0046 26.8 5.8 43 133-183 38-80 (223)
145 PRK13586 1-(5-phosphoribosyl)- 21.3 1.2E+02 0.0025 29.4 3.9 29 128-157 42-72 (232)
146 PRK10901 16S rRNA methyltransf 20.7 3.5E+02 0.0075 28.4 7.6 64 121-195 234-297 (427)
147 COG3457 Predicted amino acid r 20.6 7.4E+02 0.016 25.6 9.4 101 121-221 106-229 (353)
148 COG0357 GidB Predicted S-adeno 20.6 3.4E+02 0.0074 26.1 6.9 62 132-206 68-130 (215)
149 PF10313 DUF2415: Uncharacteri 20.4 71 0.0015 23.0 1.6 17 123-139 17-33 (43)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=2.2e-113 Score=875.39 Aligned_cols=367 Identities=49% Similarity=0.806 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHHHHhhhccccchhcccccCCCC--CchHHHHH
Q 014413 24 LIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRIS--SVSEEMLV 101 (425)
Q Consensus 24 l~~lL~~cA~av~~~~~~~A~~lL~~l~~~as~~Gd~~qRla~yF~~AL~~Rl~~~~~~~~~~l~~~~~~--~~~~~~~a 101 (425)
|++||++||+||+.||.+.|+.+|++|++++||+|||+||+|+||++||.+|+.+.+++.|.++.....+ ...+.+.+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999888888776443322 13567789
Q ss_pred HHHHHhhccchhhhHHHhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecC----ChHHHHH
Q 014413 102 RKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQ 177 (425)
Q Consensus 102 ~~~f~~~~P~~~fa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~----~~~~l~~ 177 (425)
|+.||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||+|++|||+||||||++ +.+.+++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 7889999
Q ss_pred HHHHHHHHHHhcCCceEEeee-cccccccCccccccCCCceEEEEeccccchhccCCchHHHHHHhhhhhccCCCCCCCC
Q 014413 178 MAHRLTEEAEKLDIPFQFNSV-VSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSP 256 (425)
Q Consensus 178 tg~rL~~~A~~l~v~FeF~~v-~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~Ll~~~de~~~~a~~~~~~~~~~~~~~sp 256 (425)
||++|.+||+++||||||++| ..++|++++++|++++||+|||||+|+||||+..++.
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~--------------------- 219 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGA--------------------- 219 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhcccccc---------------------
Confidence 999999999999999999996 5689999999999999999999999999999732210
Q ss_pred CCCCCCCCCCCcchhHHHHHHHhHcCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHH
Q 014413 257 DSVSSSPLSPNASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKM 336 (425)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~L~~ir~L~P~vvvl~E~e~~hn~~~F~~RF~eal~~YsalFdsLda~~~~~~~eR~~iE~~ 336 (425)
..++++.||+.||+|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.
T Consensus 220 -----------~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~ 288 (374)
T PF03514_consen 220 -----------LENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERL 288 (374)
T ss_pred -----------ccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 123689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcccccccchhhHHHHHhhCCCccccCChhHHHHHHHHhhhcCCCCcEEEecCCEEEEEECCceeE
Q 014413 337 LFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLF 416 (425)
Q Consensus 337 ~~g~eI~niVA~eG~~R~eRhE~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~g~l~L~Wk~~pL~ 416 (425)
+||+||+|||||||.+|+||||++++|++||.+|||+++|+|++++.|||.|++.|+++||+|.+++|||+||||++||+
T Consensus 289 ~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~ 368 (374)
T PF03514_consen 289 FFGREIMNIVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLV 368 (374)
T ss_pred HhhhHHHHhhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeeee
Q 014413 417 SVSAWS 422 (425)
Q Consensus 417 ~~SaW~ 422 (425)
++||||
T Consensus 369 ~~SaWr 374 (374)
T PF03514_consen 369 AASAWR 374 (374)
T ss_pred EEeCcC
Confidence 999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.71 E-value=0.0033 Score=60.98 Aligned_cols=193 Identities=13% Similarity=0.173 Sum_probs=105.3
Q ss_pred HhhccchhhhHHHhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 106 FDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 106 ~~~~P~~~fa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
....|.+...|-.++..+-..+.. .-+|+|+|-|.|.--.. |+.+- ..|..++|||+.+.+.++.+.+++.++
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~~--~~~vLDlGcGtG~~~~~----l~~~~-~~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQP--GTQVYDLGCSLGAATLS----VRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCCC--CCEEEEEcccCCHHHHH----HHHhc-CCCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 345788887777766544333332 24799999999963333 33321 124579999999999998888877553
Q ss_pred HHhcCCceEEeeecccccccCccccccCCCceEEEEeccccchhccCCchHHHHHHhhhhhccCCCCCCCCCCCCCCCCC
Q 014413 186 AEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLS 265 (425)
Q Consensus 186 A~~l~v~FeF~~v~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~Ll~~~de~~~~a~~~~~~~~~~~~~~sp~~~~~~~~~ 265 (425)
.. .-.++|. ...++++.. ...+. |-+.+.|||+- +
T Consensus 106 ~~--~~~v~~~--~~d~~~~~~-----~~~D~--vv~~~~l~~l~---~------------------------------- 140 (247)
T PRK15451 106 KA--PTPVDVI--EGDIRDIAI-----ENASM--VVLNFTLQFLE---P------------------------------- 140 (247)
T ss_pred CC--CCCeEEE--eCChhhCCC-----CCCCE--EehhhHHHhCC---H-------------------------------
Confidence 21 1134443 233443322 12233 44567799882 1
Q ss_pred CCcchhHHHHHHHh-HcCCCC-EEEEEecCCCCCCCchHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHH
Q 014413 266 PNASAKMDSFLNSL-WGLSPK-VMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIK 343 (425)
Q Consensus 266 ~~~~~~~~~~L~~i-r~L~P~-vvvl~E~e~~hn~~~F~~RF~eal~~YsalFdsLda~~~~~~~eR~~iE~~~~g~eI~ 343 (425)
..+..+++.+ +.|+|. +++++|.-... .+.....+.+..+.| ... .. -+ ...+++. ....+
T Consensus 141 ----~~~~~~l~~i~~~LkpGG~l~l~e~~~~~-~~~~~~~~~~~~~~~------~~~-~g-~s--~~ei~~~--~~~~~ 203 (247)
T PRK15451 141 ----SERQALLDKIYQGLNPGGALVLSEKFSFE-DAKVGELLFNMHHDF------KRA-NG-YS--ELEISQK--RSMLE 203 (247)
T ss_pred ----HHHHHHHHHHHHhcCCCCEEEEEEecCCC-cchhHHHHHHHHHHH------HHH-cC-CC--HHHHHHH--HHHHH
Confidence 1234555555 778997 55566643332 233344444333222 111 11 11 1222221 11223
Q ss_pred HHHhhccCcccccccchhhHHHHHhhCCCcccc
Q 014413 344 NIIACEGFERKERHEKLEKWIQRFDLACFGNVP 376 (425)
Q Consensus 344 niVA~eG~~R~eRhE~~~~W~~r~~~aGF~~~~ 376 (425)
| +-++++..+..++|+.|||..+.
T Consensus 204 ~---------~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 204 N---------VMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred h---------hcccCCHHHHHHHHHHcCchhHH
Confidence 3 23456788899999999998654
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.70 E-value=0.32 Score=45.98 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+.++..+.-.+.-+|+|+|-|.|. +...|+++ .+|..++|||+.+...++.+.+++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~----~~~~la~~--~~~~~~v~gvD~s~~~~~~a~~~~~ 91 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD----WSIALAEA--VGPEGHVIGLDFSENMLSVGRQKVK 91 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH----HHHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHH
Confidence 456666654444589999999996 23344443 2234689999999888877777664
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.68 E-value=0.12 Score=49.58 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=50.7
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCccccc
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLR 211 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L~ 211 (425)
.-+|+|+|.|.|. ++..|+++-. .|..++|||+.+.+.++.+.+++.++-. +..++|. ...+.++..
T Consensus 54 ~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~~~~---- 120 (239)
T TIGR00740 54 DSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL--CNDIRHVEI---- 120 (239)
T ss_pred CCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE--ECChhhCCC----
Confidence 3479999999994 4455554421 2458999999999989888887765422 2234443 233333332
Q ss_pred cCCCceEEEEeccccchh
Q 014413 212 VKTGEALAISSVLQLHSL 229 (425)
Q Consensus 212 ~~~gEalaVn~~~~Lh~L 229 (425)
.+.. +|-|.+.|||+
T Consensus 121 -~~~d--~v~~~~~l~~~ 135 (239)
T TIGR00740 121 -KNAS--MVILNFTLQFL 135 (239)
T ss_pred -CCCC--EEeeecchhhC
Confidence 2223 45566778987
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.11 E-value=0.95 Score=44.30 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=58.0
Q ss_pred hhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeee
Q 014413 119 TNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSV 198 (425)
Q Consensus 119 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v 198 (425)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+. +|.-+||||+.+.+.++.+.++....++...-..+|.
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~-- 132 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI-- 132 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEE--
Confidence 34444444443445589999999997 334555542 2345899999999999888777543333222234442
Q ss_pred cccccccCccccccCCCceEEEEeccccchh
Q 014413 199 VSKLENLDFDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 199 ~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
....+++. ..++..=+|.+.+.|||+
T Consensus 133 ~~d~~~lp-----~~~~sfD~V~~~~~l~~~ 158 (261)
T PLN02233 133 EGDATDLP-----FDDCYFDAITMGYGLRNV 158 (261)
T ss_pred EcccccCC-----CCCCCEeEEEEecccccC
Confidence 22333332 333434456677889987
No 6
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.06 E-value=0.43 Score=47.58 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=40.4
Q ss_pred hHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc
Q 014413 120 NQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP 192 (425)
Q Consensus 120 NqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~ 192 (425)
.+.|++.+.-.+.-+|+|+|-|.|. +...++++- |.+++|+++.+ ..++.+.++ ++..|+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-~~~~~a~~~----~~~~gl~ 198 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-GAIDLVNEN----AAEKGVA 198 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-HHHHHHHHH----HHhCCcc
Confidence 5667777765666799999999993 444555542 56899999863 555555544 3444554
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.80 E-value=2.6 Score=41.11 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=115.6
Q ss_pred hccchhhh-HHHhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHH
Q 014413 108 MFPFLKVA-FVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEA 186 (425)
Q Consensus 108 ~~P~~~fa-~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A 186 (425)
+.++++|+ |.+=+++..+.+.-.+--+|+|.+-|.| .|.-.+...+. .-+|||++.+...|+.+.+++.+.
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG-d~a~~~~k~~g------~g~v~~~D~s~~ML~~a~~k~~~~- 98 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG-DMALLLAKSVG------TGEVVGLDISESMLEVAREKLKKK- 98 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc-HHHHHHHHhcC------CceEEEEECCHHHHHHHHHHhhcc-
Confidence 45666666 4666777777765446789999999998 34444443332 579999999999999888887654
Q ss_pred HhcCCc-eEEeeecccccccCccccccCCCceEEEEeccccchhccCCchHHHHHHhhhhhccCCCCCCCCCCCCCCCCC
Q 014413 187 EKLDIP-FQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLS 265 (425)
Q Consensus 187 ~~l~v~-FeF~~v~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~Ll~~~de~~~~a~~~~~~~~~~~~~~sp~~~~~~~~~ 265 (425)
|+. ++| |..+.|+|. ..++-.=+|.|.|.||++. |
T Consensus 99 ---~~~~i~f--v~~dAe~LP-----f~D~sFD~vt~~fglrnv~---d------------------------------- 134 (238)
T COG2226 99 ---GVQNVEF--VVGDAENLP-----FPDNSFDAVTISFGLRNVT---D------------------------------- 134 (238)
T ss_pred ---CccceEE--EEechhhCC-----CCCCccCEEEeeehhhcCC---C-------------------------------
Confidence 333 343 434444443 4445555889999999882 2
Q ss_pred CCcchhHHHHHHH-hHcCCCCEEEEEecCCCCCCCchHHHHHHHHH-HHHH-HHHHhhhcCCCCcHHHHHHHHHHHHHHH
Q 014413 266 PNASAKMDSFLNS-LWGLSPKVMVVTEQDSNHNGLTLMERLLEALY-SYAA-LFDCLESSVSRTSMERLKVEKMLFGEEI 342 (425)
Q Consensus 266 ~~~~~~~~~~L~~-ir~L~P~vvvl~E~e~~hn~~~F~~RF~eal~-~Ysa-lFdsLda~~~~~~~eR~~iE~~~~g~eI 342 (425)
.+..|+- -|=|+|...+++-.=..+..+.|. ..++ ||.. ++=.+......+.++...+.+ .|
T Consensus 135 ------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~----~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~e-----Si 199 (238)
T COG2226 135 ------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR----KAYILYYFKYVLPLIGKLVAKDAEAYEYLAE-----SI 199 (238)
T ss_pred ------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH----HHHHHHHHHhHhhhhceeeecChHHHHHHHH-----HH
Confidence 2344443 466899987777444444444333 2333 4444 555555544334444444332 33
Q ss_pred HHHHhhccCcccccccchhhHHHHHhhCCCcccc
Q 014413 343 KNIIACEGFERKERHEKLEKWIQRFDLACFGNVP 376 (425)
Q Consensus 343 ~niVA~eG~~R~eRhE~~~~W~~r~~~aGF~~~~ 376 (425)
. ++-..+.=.+.|..+||..+.
T Consensus 200 ~------------~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 200 R------------RFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred H------------hCCCHHHHHHHHHhcCceEEe
Confidence 3 333444556677889998665
No 8
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.66 E-value=0.16 Score=41.87 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=47.7
Q ss_pred EEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCccccccCC
Q 014413 135 VIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKT 214 (425)
Q Consensus 135 IIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L~~~~ 214 (425)
|+|+|-|.|..=..|.+.+ .+ + |..++|||+.+.+.++.+.++..+ .+++.+|. ...+.++ ....
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~--~~D~~~l-----~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPEMLELAKKRFSE----DGPKVRFV--QADARDL-----PFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHH----TTTTSEEE--ESCTTCH-----HHHS
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHHHHHHHHHhchh----cCCceEEE--ECCHhHC-----cccC
Confidence 7999999997777777766 22 2 569999999999999877766655 45566663 2333332 2233
Q ss_pred Cce-EEEEeccccchh
Q 014413 215 GEA-LAISSVLQLHSL 229 (425)
Q Consensus 215 gEa-laVn~~~~Lh~L 229 (425)
+.. ++|.+...+||+
T Consensus 66 ~~~D~v~~~~~~~~~~ 81 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHL 81 (101)
T ss_dssp SSEEEEEE-TTGGGGS
T ss_pred CCeeEEEEcCCccCCC
Confidence 344 444445558986
No 9
>PRK06202 hypothetical protein; Provisional
Probab=94.42 E-value=0.97 Score=43.02 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=50.2
Q ss_pred hcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccC
Q 014413 127 MEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLD 206 (425)
Q Consensus 127 ~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~ 206 (425)
+...+...|+|+|-|.|. +...|...... ..|..+||||+.+.+.++.+.++. +..++.+.... .+.+.
T Consensus 56 l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~~l~~a~~~~----~~~~~~~~~~~----~~~l~ 124 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPRAVAFARANP----RRPGVTFRQAV----SDELV 124 (232)
T ss_pred cCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHHHHHHHHhcc----ccCCCeEEEEe----ccccc
Confidence 333455789999999996 33333322221 124579999999999887765543 22355554421 12221
Q ss_pred ccccccCCCceEEEEeccccchh
Q 014413 207 FDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 207 ~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
..++..=+|-|.+.|||+
T Consensus 125 -----~~~~~fD~V~~~~~lhh~ 142 (232)
T PRK06202 125 -----AEGERFDVVTSNHFLHHL 142 (232)
T ss_pred -----ccCCCccEEEECCeeecC
Confidence 122333355566779998
No 10
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.56 E-value=4.8 Score=42.58 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=54.8
Q ss_pred hhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeee
Q 014413 119 TNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSV 198 (425)
Q Consensus 119 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v 198 (425)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+.+.++.+.++. ...+...+|...
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~~l~~A~~~~----~~~~~~v~~~~~ 321 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVNMISFALERA----IGRKCSVEFEVA 321 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHHh----hcCCCceEEEEc
Confidence 33556666653445689999999995 3445666553 48999999988887666543 233444555432
Q ss_pred cccccccCccccccCCCceEEEEeccccchh
Q 014413 199 VSKLENLDFDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 199 ~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
.+.++. +.++..=+|.|...++|+
T Consensus 322 --d~~~~~-----~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 322 --DCTKKT-----YPDNSFDVIYSRDTILHI 345 (475)
T ss_pred --CcccCC-----CCCCCEEEEEECCccccc
Confidence 222221 222333355566678887
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.43 E-value=0.3 Score=40.33 Aligned_cols=51 Identities=29% Similarity=0.377 Sum_probs=35.9
Q ss_pred EEEeccCCCCcchHHHHHHHhc-CCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc
Q 014413 134 HVIDLNAAEPAQWIALIQALST-RPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP 192 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~-R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~ 192 (425)
+|+|+|-|.|. +...|++ +++ .++|||+.+.+.++.+.++..+....-+|.
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~ 55 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLFPG----ARVVGVDISPEMLEIARERAAEEGLSDRIT 55 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHHTT----SEEEEEESSHHHHHHHHHHHHHTTTTTTEE
T ss_pred EEEEEcCcCCH----HHHHHHhcCCC----CEEEEEeCCHHHHHHHHHHHHhcCCCCCeE
Confidence 68999999994 3334444 343 789999999999998888885543333333
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.26 E-value=4.2 Score=39.84 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=41.0
Q ss_pred HhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 118 LTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 118 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
-+.+.+++.+.-.+.-+|+|+|-|.|.-- ..|+.+.+ .++|||+.+...++.+.++..
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEECCHHHHHHHHHHcC
Confidence 44677777776566678999999998732 34444332 589999999888877766543
No 13
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=92.86 E-value=1.9 Score=43.14 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=59.0
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeeccc
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSK 201 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~ 201 (425)
.|.+.+.. ...|||+|-|.|.-=..|++++.+ ..++|+|+-+.+.|+.+.++|.+- .-+++++ .+...
T Consensus 56 ~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~--~i~gD 123 (301)
T TIGR03438 56 EIAAATGA--GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALAAD--YPQLEVH--GICAD 123 (301)
T ss_pred HHHHhhCC--CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHHhh--CCCceEE--EEEEc
Confidence 35555532 246999999999777778887753 378999999999999999988742 1234433 34333
Q ss_pred ccc-cCccccccCCCceEEEEeccccchh
Q 014413 202 LEN-LDFDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 202 ~e~-l~~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
..+ +.... ....+..+++.+-..+|++
T Consensus 124 ~~~~~~~~~-~~~~~~~~~~~~gs~~~~~ 151 (301)
T TIGR03438 124 FTQPLALPP-EPAAGRRLGFFPGSTIGNF 151 (301)
T ss_pred ccchhhhhc-ccccCCeEEEEecccccCC
Confidence 322 11100 0112245677766677776
No 14
>PRK08317 hypothetical protein; Provisional
Probab=92.83 E-value=7.6 Score=36.02 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHH
Q 014413 123 IIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHR 181 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~r 181 (425)
+++.+.-.+.-+|+|+|.|.|. |.. .++.+. +|.-++|+++.+...++.+.++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCCHHHHHHHHHH
Confidence 5566665556689999999884 333 344432 2456999999998877766655
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=92.67 E-value=0.9 Score=40.17 Aligned_cols=83 Identities=20% Similarity=0.293 Sum_probs=49.2
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc-eEEeeecccccccCccc
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP-FQFNSVVSKLENLDFDK 209 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~-FeF~~v~~~~e~l~~~~ 209 (425)
+..+|+|+|-|.|..= ..|+.+- .|..++|||+.+.+.++.+.. .++..+++ .+|. ..++++++..
T Consensus 3 ~~~~iLDlGcG~G~~~----~~l~~~~--~~~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~--~~d~~~l~~~- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLL----IQLAKEL--NPGAKIIGVDISEEMIEYAKK----RAKELGLDNIEFI--QGDIEDLPQE- 69 (152)
T ss_dssp TTSEEEEET-TTSHHH----HHHHHHS--TTTSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEE--ESBTTCGCGC-
T ss_pred CCCEEEEecCcCcHHH----HHHHHhc--CCCCEEEEEECcHHHHHHhhc----ccccccccccceE--Eeehhccccc-
Confidence 4578999999999533 3344211 123679999999888876665 45666777 4554 3455554422
Q ss_pred cccCCCceEEEEeccccchh
Q 014413 210 LRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 210 L~~~~gEalaVn~~~~Lh~L 229 (425)
+. +..=+|.+...+|++
T Consensus 70 ~~---~~~D~I~~~~~l~~~ 86 (152)
T PF13847_consen 70 LE---EKFDIIISNGVLHHF 86 (152)
T ss_dssp SS---TTEEEEEEESTGGGT
T ss_pred cC---CCeeEEEEcCchhhc
Confidence 22 333344455556776
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=92.65 E-value=0.51 Score=45.66 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeeccc
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSK 201 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~ 201 (425)
.+++.+...+-.+|+|++.|.|.-+. .|+.+.+ |.-+|||++.+.+.|+.+.+++.+.... ..+| +..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~----~l~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~--v~~d 106 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTR----ELARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQ---NIEF--VQGD 106 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHH----HHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT-----SEEE--EE-B
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHH----HHHHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCC---CeeE--EEcC
Confidence 44555666666799999999995433 4454422 3459999999999999999888765433 3333 2223
Q ss_pred ccccCccccccCCCceEEEEeccccchh
Q 014413 202 LENLDFDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 202 ~e~l~~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
.+ +|-..++..=+|.|.|.||++
T Consensus 107 a~-----~lp~~d~sfD~v~~~fglrn~ 129 (233)
T PF01209_consen 107 AE-----DLPFPDNSFDAVTCSFGLRNF 129 (233)
T ss_dssp TT-----B--S-TT-EEEEEEES-GGG-
T ss_pred HH-----HhcCCCCceeEEEHHhhHHhh
Confidence 33 344455667788899999988
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.60 E-value=1.3 Score=42.84 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=37.0
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHH
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMA 179 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg 179 (425)
..+++.+.-.+.-+|+|+|-|.|. +...|+.+. |..++||++.+...++.+.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~~~~~a~ 70 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPEMVAAAR 70 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHH
Confidence 356666665555689999999993 455666653 3368999999988776653
No 18
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.58 E-value=0.29 Score=48.15 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=41.0
Q ss_pred cCCceEEEEeccCCCCcchHHHHHHHhcCCC--CCCeEEEeEecCChHHHHHHHHHH
Q 014413 128 EGEKVVHVIDLNAAEPAQWIALIQALSTRPE--GPPHLRITGIHPQKEVLDQMAHRL 182 (425)
Q Consensus 128 ~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~--gpP~LRIT~i~~~~~~l~~tg~rL 182 (425)
...+.++|.|.|-|.|--.-+|--.|++... ..+..+|+|++.+...|+.+.+..
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 3445799999999999987777655654321 134699999999999998776653
No 19
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=92.56 E-value=1.3 Score=38.67 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=29.6
Q ss_pred CCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHH
Q 014413 129 GEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQ 177 (425)
Q Consensus 129 g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~ 177 (425)
..+.-.|+|+|-|.| .| ...|+.+ |. ++||++.+...++.
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECCHHHHhh
Confidence 355669999999999 44 4555554 32 99999999887765
No 20
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.53 E-value=8.6 Score=35.47 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=40.5
Q ss_pred HhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 118 LTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 118 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
..-+.+++.+...+...|+|+|-|.|. +...++.+ +|+..++|+++.+...++.+.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECCHHHHHHHHHHhc
Confidence 333456666655567799999999985 33344443 2333789999999888777776654
No 21
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=92.29 E-value=4.1 Score=38.44 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=29.6
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHR 181 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~r 181 (425)
.|+|+|-|.|..-..| +.+.+ ..++|||+.+.+.++.+.++
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~~---~~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLLP---FKHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhCC---CCeEEEEECCHHHHHHHHhh
Confidence 4999999999544444 33321 26899999999988877654
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.41 E-value=2.9 Score=42.52 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=46.3
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCC--ceEEeeecccccccCcccc
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDI--PFQFNSVVSKLENLDFDKL 210 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v--~FeF~~v~~~~e~l~~~~L 210 (425)
-.|+|+|-|.|. +...|+. .+ .++|||+.+.+.++.+..+ ++..++ ..+|.. .+.+++..
T Consensus 133 ~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae~l~~--- 194 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYLC--TTAEKLAD--- 194 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEEe--cCHHHhhh---
Confidence 479999999996 4556764 33 5899999998888766544 222121 233332 23343321
Q ss_pred ccCCCceEEEEeccccchh
Q 014413 211 RVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 211 ~~~~gEalaVn~~~~Lh~L 229 (425)
.++..=+|-|...|||+
T Consensus 195 --~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 195 --EGRKFDAVLSLEVIEHV 211 (322)
T ss_pred --ccCCCCEEEEhhHHHhc
Confidence 12223356667789998
No 23
>PRK05785 hypothetical protein; Provisional
Probab=91.29 E-value=5.1 Score=38.36 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=44.2
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCcccccc
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRV 212 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L~~ 212 (425)
-.|+|+|.|.|.- ...|+.+.+ .++|||+.+.+.++....+ .+ + +....+++ ..
T Consensus 53 ~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S~~Ml~~a~~~---------~~--~--~~~d~~~l-----p~ 106 (226)
T PRK05785 53 KKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYAENMLKMNLVA---------DD--K--VVGSFEAL-----PF 106 (226)
T ss_pred CeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCCHHHHHHHHhc---------cc--e--EEechhhC-----CC
Confidence 4799999999943 334554432 4899999999988765432 11 1 22233333 23
Q ss_pred CCCceEEEEeccccchh
Q 014413 213 KTGEALAISSVLQLHSL 229 (425)
Q Consensus 213 ~~gEalaVn~~~~Lh~L 229 (425)
.++..=+|.|.+.|||+
T Consensus 107 ~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 107 RDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCCEEEEEecChhhcc
Confidence 34445566777789986
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=90.48 E-value=3.6 Score=38.36 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=37.0
Q ss_pred hHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHH
Q 014413 120 NQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRL 182 (425)
Q Consensus 120 NqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL 182 (425)
++.+++.+...+.-.|+|+|-|.|. +.-.||++ | .+||||+.+.+.++.+.++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g---~~V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G---FDVTAWDKNPMSIANLERIK 72 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C---CEEEEEeCCHHHHHHHHHHH
Confidence 4455566554444589999999996 33445654 3 48999999988877665543
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=90.21 E-value=3.1 Score=40.03 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=39.7
Q ss_pred hhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHH
Q 014413 119 TNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHR 181 (425)
Q Consensus 119 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~r 181 (425)
-+..+++.+.-.+.-+|+|+|-|.| .+...|+.+. |..+++||+.+...++.+.++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s~~~i~~a~~~ 74 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSSPAMLAEARSR 74 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECCHHHHHHHHHh
Confidence 3556677766555668999999999 2344566553 236999999998888766654
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=88.89 E-value=4.2 Score=37.83 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=44.9
Q ss_pred HhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEE
Q 014413 118 LTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQF 195 (425)
Q Consensus 118 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF 195 (425)
++...|++.++-.+.-+|+|+|-|.|.--. .|+.+ | .++|||+.+...++.+.++ ++.-|++.++
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~--g---~~V~~iD~s~~~l~~a~~~----~~~~~~~v~~ 81 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA--G---YDVRAWDHNPASIASVLDM----KARENLPLRT 81 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC--C---CeEEEEECCHHHHHHHHHH----HHHhCCCcee
Confidence 556788888876555699999999996433 33444 2 4899999998877766543 3444666444
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=88.53 E-value=12 Score=34.87 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=31.4
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
..+|+|+|-|.|.- ...|+.+ + |..++|+++.+.+.++.+.+++.
T Consensus 35 ~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 35 PASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred CCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeChHHHHHHHHHhcC
Confidence 46899999999953 3334433 1 35679999999887776666543
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=88.53 E-value=7.1 Score=41.31 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=33.4
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHH
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQM 178 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~t 178 (425)
..|++.+...+.-+|+|+|-|.|.- ...|+++. -++|||+.+...++..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~----~~~la~~~-----~~v~giD~s~~~l~~a 75 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRF----TGELAKKA-----GQVIALDFIESVIKKN 75 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHH----HHHHHhhC-----CEEEEEeCCHHHHHHH
Confidence 4556666544444899999999943 34455442 2789999998877653
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.44 E-value=5 Score=39.68 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=40.4
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEe
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFN 196 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~ 196 (425)
+.+++++.--+.=+|+|+|-|.|. +...|+.+ | .++|||+.+...++.+.++ ++..++.+++.
T Consensus 110 ~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g---~~V~avD~s~~ai~~~~~~----~~~~~l~v~~~ 172 (287)
T PRK12335 110 SEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G---FDVTAVDINQQSLENLQEI----AEKENLNIRTG 172 (287)
T ss_pred HHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHH----HHHcCCceEEE
Confidence 345555432222289999999996 33445554 3 5899999998877765544 45557765554
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=88.05 E-value=23 Score=33.02 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=36.1
Q ss_pred HHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 123 IIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+++.+.-.+..+|+|+|-|.|. +...++.+ +|+..++|+++.+...++.+.+++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 3444443345789999999985 23333332 2346899999999887777766653
No 31
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=86.97 E-value=1.4 Score=34.54 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=44.6
Q ss_pred EeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCccccccCCC
Q 014413 136 IDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTG 215 (425)
Q Consensus 136 IDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L~~~~g 215 (425)
+|+|.|.|.....|.+. +..++|+++.+.+.++.+.+++. ..++++.- . +...+.+.++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~----~~~~~~~~----~-----d~~~l~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK----NEGVSFRQ----G-----DAEDLPFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT----TSTEEEEE----S-----BTTSSSS-TT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc----ccCchhee----e-----hHHhCccccc
Confidence 58899988766655554 23799999999887776666543 23444221 2 2333444556
Q ss_pred ceEEEEeccccchh
Q 014413 216 EALAISSVLQLHSL 229 (425)
Q Consensus 216 EalaVn~~~~Lh~L 229 (425)
-.=+|-|...+||+
T Consensus 60 sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL 73 (95)
T ss_dssp -EEEEEEESHGGGS
T ss_pred cccccccccceeec
Confidence 66677888889988
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=86.87 E-value=6 Score=38.22 Aligned_cols=91 Identities=9% Similarity=0.068 Sum_probs=53.5
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVS 200 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~ 200 (425)
..|++.+.. +.-+|+|+|-|.|. +...|+.+ | .++|+|+.+.+.++.+.+++.+ .|+.-....+..
T Consensus 35 ~~~l~~l~~-~~~~vLDiGcG~G~----~a~~la~~--g---~~v~~vD~s~~~l~~a~~~~~~----~g~~~~v~~~~~ 100 (255)
T PRK11036 35 DRLLAELPP-RPLRVLDAGGGEGQ----TAIKLAEL--G---HQVILCDLSAEMIQRAKQAAEA----KGVSDNMQFIHC 100 (255)
T ss_pred HHHHHhcCC-CCCEEEEeCCCchH----HHHHHHHc--C---CEEEEEECCHHHHHHHHHHHHh----cCCccceEEEEc
Confidence 346666653 34599999999993 45556655 2 5899999999988877766543 354322333333
Q ss_pred cccccCccccccCCCceEEEEeccccchh
Q 014413 201 KLENLDFDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 201 ~~e~l~~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
.++++.. ..++..=+|-|...|||+
T Consensus 101 d~~~l~~----~~~~~fD~V~~~~vl~~~ 125 (255)
T PRK11036 101 AAQDIAQ----HLETPVDLILFHAVLEWV 125 (255)
T ss_pred CHHHHhh----hcCCCCCEEEehhHHHhh
Confidence 3333321 112222234456668887
No 33
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=86.71 E-value=7.7 Score=36.42 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=44.6
Q ss_pred hHHHhhHHHHHhhc--CCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 115 AFVLTNQAIIEAME--GEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 115 a~~taNqaILeA~~--g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
++-...+.+++.+. ..+.-+|+|+|-|.|. +...|+.+ + .++|||+.+.+.+..+.+++..
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~s~~~i~~a~~~~~~ 99 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDISEQMVQMARNRAQG 99 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHHHHh
Confidence 45566677777776 2445689999999994 55566654 2 4899999999988877777643
No 34
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=86.60 E-value=11 Score=38.25 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=52.8
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc-eEEeeecc
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP-FQFNSVVS 200 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~-FeF~~v~~ 200 (425)
.|...+.. ...|||||.|.|..=..||++|.... . ..+-.+|+-+.+.|+++.++|. .-..| .++++|..
T Consensus 69 ~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~-~--~~~Y~plDIS~~~L~~a~~~L~----~~~~p~l~v~~l~g 139 (319)
T TIGR03439 69 DIAASIPS--GSMLVELGSGNLRKVGILLEALERQK-K--SVDYYALDVSRSELQRTLAELP----LGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcC-C--CceEEEEECCHHHHHHHHHhhh----hccCCCeEEEEEEe
Confidence 45555532 23799999999999999999998432 2 3788999999999999999997 11345 77777755
No 35
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=85.98 E-value=8.7 Score=35.44 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=31.7
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHH
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQM 178 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~t 178 (425)
.|.+.+...+ +|+|+|-|.|. ++..|+.+.+ .+++||+.+.+.++.+
T Consensus 6 ~i~~~i~~~~--~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 6 SILNLIPPGS--RVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQDGVLAC 52 (194)
T ss_pred HHHHhcCCCC--EEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCHHHHHHH
Confidence 4555554333 79999999994 5566765532 3679999887766554
No 36
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=85.36 E-value=7.5 Score=38.47 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=40.8
Q ss_pred hHHHhhHHHHHhhc----CCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 115 AFVLTNQAIIEAME----GEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 115 a~~taNqaILeA~~----g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
+++++-..||+.++ +..--+|+|||.|-|. .+.-+....+ -...+|.|+.+...+ +.++.|.+-
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGt---a~wAa~~~~~---~~~~~~~vd~s~~~~-~l~~~l~~~ 80 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGT---ALWAAREVWP---SLKEYTCVDRSPEML-ELAKRLLRA 80 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHH---HHHHHHHHhc---CceeeeeecCCHHHH-HHHHHHHhc
Confidence 55666677777665 3345599999999885 2222222222 237899999988765 466666543
No 37
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=83.46 E-value=6.6 Score=40.13 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=52.0
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhc---CCceEEeeecccccccCc
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKL---DIPFQFNSVVSKLENLDF 207 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l---~v~FeF~~v~~~~e~l~~ 207 (425)
...+|+|++.|.|.= |..=...+. =++.||+.+.+.++++.+|..+.-+.. ...+.|.......+....
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~ 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAKI-----KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE 133 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS
T ss_pred CCCeEEEecCCCchh---HHHHHhcCC-----CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc
Confidence 678999999998852 222222222 468899999999999999996655332 233444332111122211
Q ss_pred c---ccccCCCceEEEEeccccchhcc
Q 014413 208 D---KLRVKTGEALAISSVLQLHSLLA 231 (425)
Q Consensus 208 ~---~L~~~~gEalaVn~~~~Lh~Ll~ 231 (425)
. .+.-..+..=+|+|+|.||+...
T Consensus 134 ~l~~~~~~~~~~FDvVScQFalHY~Fe 160 (331)
T PF03291_consen 134 SLREKLPPRSRKFDVVSCQFALHYAFE 160 (331)
T ss_dssp HHHCTSSSTTS-EEEEEEES-GGGGGS
T ss_pred hhhhhccccCCCcceeehHHHHHHhcC
Confidence 1 11112246779999999999974
No 38
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=83.37 E-value=10 Score=38.53 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=34.1
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
+...|+|+|-|.|. +...|+.+ | .++|||+.+...++.+.++..+
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g---~~V~gvD~S~~ml~~A~~~~~~ 188 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G---AIVSASDISAAMVAEAERRAKE 188 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHHHHh
Confidence 44689999999996 44555554 3 4899999999999887776543
No 39
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=81.90 E-value=12 Score=37.23 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=66.7
Q ss_pred hhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeee
Q 014413 119 TNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSV 198 (425)
Q Consensus 119 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v 198 (425)
-...|+|.+.=++-=||+|+|-| |-.+...+|++.| .++|||..+.+..+.+.++ ++..|++-....+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~Q~~~a~~~----~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEEQAEYARER----IREAGLEDRVEVR 117 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HHHHHHHHHH----HHCSTSSSTEEEE
T ss_pred HHHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHHHHHHHHHH----HHhcCCCCceEEE
Confidence 34556677654555599999766 6688889998864 6999999987766655554 4566776433333
Q ss_pred cccccccCccccccCCCceEEEEeccccchhccCCchHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCcchhHHHHHHH
Q 014413 199 VSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLSPNASAKMDSFLNS 278 (425)
Q Consensus 199 ~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~Ll~~~de~~~~a~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~L~~ 278 (425)
.....+++. +=+ +|.++-.+.|+. . .....|++.
T Consensus 118 ~~D~~~~~~------~fD--~IvSi~~~Ehvg---~-----------------------------------~~~~~~f~~ 151 (273)
T PF02353_consen 118 LQDYRDLPG------KFD--RIVSIEMFEHVG---R-----------------------------------KNYPAFFRK 151 (273)
T ss_dssp ES-GGG---------S-S--EEEEESEGGGTC---G-----------------------------------GGHHHHHHH
T ss_pred EeeccccCC------CCC--EEEEEechhhcC---h-----------------------------------hHHHHHHHH
Confidence 333333332 212 233344567762 1 135678888
Q ss_pred h-HcCCCCEEEEEe
Q 014413 279 L-WGLSPKVMVVTE 291 (425)
Q Consensus 279 i-r~L~P~vvvl~E 291 (425)
+ +-|+|.-..++.
T Consensus 152 ~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 152 ISRLLKPGGRLVLQ 165 (273)
T ss_dssp HHHHSETTEEEEEE
T ss_pred HHHhcCCCcEEEEE
Confidence 7 667999877764
No 40
>PLN02244 tocopherol O-methyltransferase
Probab=81.02 E-value=20 Score=36.54 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=48.1
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCC--ceEEeeecccccccCcc
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDI--PFQFNSVVSKLENLDFD 208 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v--~FeF~~v~~~~e~l~~~ 208 (425)
+.-+|+|+|-|.|. +...|+++.+ .++|||+.+...++.+.++ ++..|+ ..+|.. ....++
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~~--~D~~~~--- 180 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQV--ADALNQ--- 180 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEE--cCcccC---
Confidence 34579999999994 4556666543 4899999988876655443 333344 244432 222222
Q ss_pred ccccCCCceEEEEeccccchh
Q 014413 209 KLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 209 ~L~~~~gEalaVn~~~~Lh~L 229 (425)
...++..=+|-|...+||+
T Consensus 181 --~~~~~~FD~V~s~~~~~h~ 199 (340)
T PLN02244 181 --PFEDGQFDLVWSMESGEHM 199 (340)
T ss_pred --CCCCCCccEEEECCchhcc
Confidence 2233434456667778887
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=80.88 E-value=32 Score=32.44 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=54.2
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVS 200 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~ 200 (425)
..|+++++--+.-.++|+|-|.|.- + --||++ | +.+|+++.+...++. |.+.|+.-+++.+....
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~--G---~~VtAvD~s~~al~~----l~~~a~~~~l~i~~~~~-- 84 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQ--G---FDVTAVDISPVALEK----LQRLAEEEGLDIRTRVA-- 84 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHT--T----EEEEEESSHHHHHH----HHHHHHHTT-TEEEEE---
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHC--C---CeEEEEECCHHHHHH----HHHHHhhcCceeEEEEe--
Confidence 4577777665666899999999952 1 135554 3 899999999877654 56678888999666543
Q ss_pred cccccCccccccCCCceEEEEeccccchh
Q 014413 201 KLENLDFDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 201 ~~e~l~~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
.+++.+. +++.=+|.+...+++|
T Consensus 85 Dl~~~~~------~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 85 DLNDFDF------PEEYDFIVSTVVFMFL 107 (192)
T ss_dssp BGCCBS-------TTTEEEEEEESSGGGS
T ss_pred cchhccc------cCCcCEEEEEEEeccC
Confidence 2333222 1333356666778888
No 42
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=80.72 E-value=0.7 Score=37.58 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=30.9
Q ss_pred EeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHH
Q 014413 136 IDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEA 186 (425)
Q Consensus 136 IDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A 186 (425)
+|+|-|.|.==..|++.+ |..++|+++.+...++.+.+++.+.-
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 588888886555555555 67999999999888877777766543
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=79.47 E-value=27 Score=34.98 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=61.4
Q ss_pred hHHHhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceE
Q 014413 115 AFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQ 194 (425)
Q Consensus 115 a~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~Fe 194 (425)
|.+..-..|++-+.=++--||+||| +.|-.|+.-.|++-+ .++|||+-+.+.++.+.+++.+ .|++=.
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiG----CGWG~l~~~aA~~y~----v~V~GvTlS~~Q~~~~~~r~~~----~gl~~~ 123 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIG----CGWGGLAIYAAEEYG----VTVVGVTLSEEQLAYAEKRIAA----RGLEDN 123 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeC----CChhHHHHHHHHHcC----CEEEEeeCCHHHHHHHHHHHHH----cCCCcc
Confidence 3344445566666656778999995 458899999999875 7999999998877777766543 455533
Q ss_pred EeeecccccccCccccccCCCceEEEEeccccchh
Q 014413 195 FNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 195 F~~v~~~~e~l~~~~L~~~~gEalaVn~~~~Lh~L 229 (425)
.+.....+.+++.. + =.|.++-.++|+
T Consensus 124 v~v~l~d~rd~~e~-f-------DrIvSvgmfEhv 150 (283)
T COG2230 124 VEVRLQDYRDFEEP-F-------DRIVSVGMFEHV 150 (283)
T ss_pred cEEEeccccccccc-c-------ceeeehhhHHHh
Confidence 33333344444432 1 134445557777
No 44
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=78.57 E-value=26 Score=32.34 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=35.6
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeeccccccc
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENL 205 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l 205 (425)
-+|+|+|-|.|.- .-.+ +.. . |..++|+|+.+...++.+.+++ ++.|++ .+..+..+++++
T Consensus 44 ~~vLDiGcGtG~~-s~~l-a~~-~----~~~~V~~iD~s~~~~~~a~~~~----~~~~~~-~i~~i~~d~~~~ 104 (181)
T TIGR00138 44 KKVIDIGSGAGFP-GIPL-AIA-R----PELKLTLLESNHKKVAFLREVK----AELGLN-NVEIVNGRAEDF 104 (181)
T ss_pred CeEEEecCCCCcc-HHHH-HHH-C----CCCeEEEEeCcHHHHHHHHHHH----HHhCCC-CeEEEecchhhc
Confidence 4899999999932 1111 211 1 3368999999988776655544 344554 233343445543
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=78.28 E-value=25 Score=36.60 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=37.9
Q ss_pred hHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHH
Q 014413 120 NQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRL 182 (425)
Q Consensus 120 NqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL 182 (425)
-..|++.+.-.+.=+|+|+|.|.|. +...++++.+ .++|||+.+.+.++.+.++.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAEQQKLAQERC 210 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHHHHHHHHHHh
Confidence 3455565543444589999988774 4455565543 48999999998887776665
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=76.50 E-value=63 Score=30.09 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=33.3
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc-eEE
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP-FQF 195 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~-FeF 195 (425)
-.|+|+|-|.|.. ++ .++.+. |..++|+|+.+.+.++.+.+++.+ .+++ ++|
T Consensus 47 ~~VLDiGcGtG~~--al--~la~~~---~~~~V~giD~s~~~l~~A~~~~~~----~~l~~i~~ 99 (187)
T PRK00107 47 ERVLDVGSGAGFP--GI--PLAIAR---PELKVTLVDSLGKKIAFLREVAAE----LGLKNVTV 99 (187)
T ss_pred CeEEEEcCCCCHH--HH--HHHHHC---CCCeEEEEeCcHHHHHHHHHHHHH----cCCCCEEE
Confidence 4699999999932 22 222221 236999999998888777665444 4554 444
No 47
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=75.79 E-value=11 Score=37.07 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=42.4
Q ss_pred ccchhhhH-HHhhHHHH----HhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHH
Q 014413 109 FPFLKVAF-VLTNQAII----EAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRL 182 (425)
Q Consensus 109 ~P~~~fa~-~taNqaIL----eA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL 182 (425)
.|--+++. |..|+.|. +.+.-.+.-+|+|+|-|.| .+...|+.+ ++ ++|||+.+.+.++.+.+++
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEIDRDLAPILAETF 84 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECCHHHHHHHHHhh
Confidence 44444444 44554444 4444344568999999998 466666766 32 8999999988777765544
No 48
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=75.04 E-value=71 Score=29.63 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=30.0
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
...|+|+|-|.|. +...+++. + .++|+++.+...++.+..++.
T Consensus 46 ~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 46 GLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred CCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHH
Confidence 5689999999884 33345543 2 249999999887777766554
No 49
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=74.33 E-value=20 Score=33.43 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=30.7
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+|+|+|-|.|. +...++++. |..++||++.+.+.++.+.+++.
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 68999998885 344555543 23689999998887777766653
No 50
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=73.81 E-value=48 Score=31.65 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=37.3
Q ss_pred hhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHH
Q 014413 119 TNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHR 181 (425)
Q Consensus 119 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~r 181 (425)
.-+.+++.+...+.-+|+|+|-|.|. +.+.|+.+ | -++|+++.+.+.++.+.++
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G---SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C---CeEEEEECCHHHHHHHHhh
Confidence 44455666654444579999999993 55566653 2 4899999998877766554
No 51
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=73.63 E-value=9.1 Score=33.69 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=34.8
Q ss_pred hcCCceEEEEeccCCCCcchHHHHHHHhcCCC-CCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 127 MEGEKVVHVIDLNAAEPAQWIALIQALSTRPE-GPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 127 ~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~-gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
-...+..+|||||-|.|. |=..|+..-. -.|.++|++|+.+....+.+..+..+
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 345778999999999984 3333333000 02669999999887766544444333
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=72.85 E-value=37 Score=34.46 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHH
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQ 177 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~ 177 (425)
.+|++.+...+.=+|+|+|-|.|. ++..++.+ |+ -+++||+++...+.+
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~~ml~q 159 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTVLFLCQ 159 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCHHHHHH
Confidence 345555543333489999999996 34444443 33 278999999876654
No 53
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=72.36 E-value=13 Score=36.19 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=69.6
Q ss_pred HHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeeccccc
Q 014413 124 IEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLE 203 (425)
Q Consensus 124 LeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e 203 (425)
+.-+.-+.---|+|+|-|-|.+ -+-|++|-.+ -.||||+++.+.|+++.++|- ..+|..
T Consensus 23 la~Vp~~~~~~v~DLGCGpGns----TelL~~RwP~---A~i~GiDsS~~Mla~Aa~rlp--------~~~f~~------ 81 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNS----TELLARRWPD---AVITGIDSSPAMLAKAAQRLP--------DATFEE------ 81 (257)
T ss_pred HhhCCccccceeeecCCCCCHH----HHHHHHhCCC---CeEeeccCCHHHHHHHHHhCC--------CCceec------
Confidence 3444555666899999999965 3456666433 689999999999888766553 333421
Q ss_pred ccCcccccc-CCCceEEEEeccccchhccCCchHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCcchhHHHHHHHhHcC
Q 014413 204 NLDFDKLRV-KTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLSPNASAKMDSFLNSLWGL 282 (425)
Q Consensus 204 ~l~~~~L~~-~~gEalaVn~~~~Lh~Ll~~~de~~~~a~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~L~~ir~L 282 (425)
-|...+.- .+-..|.-|.+ ||-| +| +-+-|-+.+-.|
T Consensus 82 -aDl~~w~p~~~~dllfaNAv--lqWl---pd------------------------------------H~~ll~rL~~~L 119 (257)
T COG4106 82 -ADLRTWKPEQPTDLLFANAV--LQWL---PD------------------------------------HPELLPRLVSQL 119 (257)
T ss_pred -ccHhhcCCCCccchhhhhhh--hhhc---cc------------------------------------cHHHHHHHHHhh
Confidence 12222211 12233566666 4444 22 335566778889
Q ss_pred CCCEEEEEecCCCCCCC
Q 014413 283 SPKVMVVTEQDSNHNGL 299 (425)
Q Consensus 283 ~P~vvvl~E~e~~hn~~ 299 (425)
.|.-+.-|-.-.|+..|
T Consensus 120 ~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 120 APGGVLAVQMPDNLDEP 136 (257)
T ss_pred CCCceEEEECCCccCch
Confidence 99988888666665444
No 54
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=70.08 E-value=18 Score=35.49 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=57.2
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCcccc
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKL 210 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L 210 (425)
...-|+|+|-|.| .|-+.+|+. | ..+|||+.+...++.+.. .|.+-|+..+|... ..|++....
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~--G---a~VtgiD~se~~I~~Ak~----ha~e~gv~i~y~~~--~~edl~~~~- 122 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL--G---ASVTGIDASEKPIEVAKL----HALESGVNIDYRQA--TVEDLASAG- 122 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC--C---CeeEEecCChHHHHHHHH----hhhhccccccchhh--hHHHHHhcC-
Confidence 4467999999988 788888865 3 899999999887766543 46677888888764 345444331
Q ss_pred ccCCCceEEEEeccccchh
Q 014413 211 RVKTGEALAISSVLQLHSL 229 (425)
Q Consensus 211 ~~~~gEalaVn~~~~Lh~L 229 (425)
+-.=+|-|+=-|+|+
T Consensus 123 ----~~FDvV~cmEVlEHv 137 (243)
T COG2227 123 ----GQFDVVTCMEVLEHV 137 (243)
T ss_pred ----CCccEEEEhhHHHcc
Confidence 333478888889998
No 55
>PRK06922 hypothetical protein; Provisional
Probab=69.27 E-value=40 Score=37.78 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=49.9
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCcccccc
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRV 212 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L~~ 212 (425)
-.|+|+|.|.|. +...|+.+. |..++|||+.+...++.+.+++. ..+.++++ +..+..++.. .+
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~--I~gDa~dLp~---~f 483 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISENVIDTLKKKKQ----NEGRSWNV--IKGDAINLSS---SF 483 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhh----hcCCCeEE--EEcchHhCcc---cc
Confidence 479999999983 445666542 45899999999998888776643 23455444 2222222210 03
Q ss_pred CCCceEEEEeccccchhc
Q 014413 213 KTGEALAISSVLQLHSLL 230 (425)
Q Consensus 213 ~~gEalaVn~~~~Lh~Ll 230 (425)
.++.+=+|-+.+.+|++.
T Consensus 484 edeSFDvVVsn~vLH~L~ 501 (677)
T PRK06922 484 EKESVDTIVYSSILHELF 501 (677)
T ss_pred CCCCEEEEEEchHHHhhh
Confidence 344444455667789874
No 56
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=68.62 E-value=59 Score=32.93 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHH
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLD 176 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~ 176 (425)
.|++.+..-+--+|+|+|-|.|. +...++.+ |+- +++||+.+...+.
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g~~--~V~GiD~S~~~l~ 159 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--GAK--LVVGIDPSQLFLC 159 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCCHHHHH
Confidence 33445532222379999999994 23345544 322 5999998876553
No 57
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=68.51 E-value=1.3e+02 Score=30.53 Aligned_cols=127 Identities=22% Similarity=0.293 Sum_probs=78.0
Q ss_pred cCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc--eEEeeeccccccc
Q 014413 128 EGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP--FQFNSVVSKLENL 205 (425)
Q Consensus 128 ~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~--FeF~~v~~~~e~l 205 (425)
+..+.|||+|+-.|+| --++++|..-|..|-++ +-.+-+...+ +.|+.|.+ +.|+. ++|.-- ..+
T Consensus 132 ~~g~pvrIlDIAaG~G---RYvlDal~~~~~~~~~i--~LrDys~~Nv-~~g~~li~---~~gL~~i~~f~~~----dAf 198 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHG---RYVLDALEKHPERPDSI--LLRDYSPINV-EKGRALIA---ERGLEDIARFEQG----DAF 198 (311)
T ss_pred hcCCceEEEEeccCCc---HHHHHHHHhCCCCCceE--EEEeCCHHHH-HHHHHHHH---HcCCccceEEEec----CCC
Confidence 3467899999999999 45999999988765444 4455555544 45665544 34444 355432 234
Q ss_pred Cccccc-cCCCceEEEEeccccchhccCCchHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCcchhHHHHHHHh-HcCC
Q 014413 206 DFDKLR-VKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYSQSPDSVSSSPLSPNASAKMDSFLNSL-WGLS 283 (425)
Q Consensus 206 ~~~~L~-~~~gEalaVn~~~~Lh~Ll~~~de~~~~a~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~L~~i-r~L~ 283 (425)
+.+++. +.|--.|+|-|- |+-|.. |.. .+..-|+.+ ..+.
T Consensus 199 d~~~l~~l~p~P~l~iVsG--L~ElF~--Dn~----------------------------------lv~~sl~gl~~al~ 240 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSG--LYELFP--DND----------------------------------LVRRSLAGLARALE 240 (311)
T ss_pred CHhHhhccCCCCCEEEEec--chhhCC--cHH----------------------------------HHHHHHHHHHHHhC
Confidence 444443 455556777655 788863 321 123334555 4478
Q ss_pred CCEEEEEecCCCCCCCchHHHH
Q 014413 284 PKVMVVTEQDSNHNGLTLMERL 305 (425)
Q Consensus 284 P~vvvl~E~e~~hn~~~F~~RF 305 (425)
|.-..+.-.--.|-...|..|.
T Consensus 241 pgG~lIyTgQPwHPQle~IAr~ 262 (311)
T PF12147_consen 241 PGGYLIYTGQPWHPQLEMIARV 262 (311)
T ss_pred CCcEEEEcCCCCCcchHHHHHH
Confidence 8888887666677666666653
No 58
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=68.04 E-value=76 Score=30.70 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=29.1
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+|+|+|.|.|.- ..+ ++... | +.-+||+|+.+.+.++.+.++..
T Consensus 80 ~VLDiG~G~G~~-~~~---~a~~~-g-~~~~v~gvD~s~~~l~~A~~~~~ 123 (272)
T PRK11873 80 TVLDLGSGGGFD-CFL---AARRV-G-PTGKVIGVDMTPEMLAKARANAR 123 (272)
T ss_pred EEEEeCCCCCHH-HHH---HHHHh-C-CCCEEEEECCCHHHHHHHHHHHH
Confidence 899999998742 221 22221 1 34589999999888877766543
No 59
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=67.99 E-value=46 Score=31.00 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=32.2
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
+.-.|+|+|-|.|.- ...|+.+ + .++||++.+...++.+.++..+
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCHHHHHHHHHHHHh
Confidence 446899999999953 3345543 2 3499999999888877776543
No 60
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=66.38 E-value=75 Score=29.95 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=31.7
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
-.|+|++.|.| .--|.+|+... -++|+|+.+.+.++.+.+++...
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~a-----~~V~~vE~~~~a~~~a~~Nl~~~ 99 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRYA-----AGATLLEMDRAVAQQLIKNLATL 99 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcCC-----CEEEEEECCHHHHHHHHHHHHHh
Confidence 36899999999 33345566431 48999999888777776665443
No 61
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=66.33 E-value=82 Score=32.54 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.7
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+|+|++-|.| .+--.||.+ + -+++||+.+...++.+.+++.
T Consensus 236 ~vLDL~cG~G----~~~l~la~~--~---~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAGP--D---TQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred EEEEccCCcc----HHHHHHhhc--C---CeEEEEECCHHHHHHHHHHHH
Confidence 6899999988 333344543 2 379999999998887776653
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=64.16 E-value=21 Score=29.44 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=32.0
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
+|+|+|.|.|.. ...++++. |..++|+++.+...++.+.+++..+
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~ 66 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNPEALRLIERNARRF 66 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCHHHHHHHHHHHHHh
Confidence 899999998843 33344442 2378999999988887777665543
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=62.89 E-value=1.3e+02 Score=30.71 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=45.9
Q ss_pred hhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEe
Q 014413 119 TNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFN 196 (425)
Q Consensus 119 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~ 196 (425)
+...+++.+.....=+|+|||-|.|. +-..++.+. |..++|+++.+...++.+.+++.+ .++..++.
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~~ 250 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAALESSRATLAA----NGLEGEVF 250 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCCCEEE
Confidence 33566777764333379999999996 444555542 347899999999999888877654 35555553
No 64
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=62.72 E-value=1.1e+02 Score=29.04 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=29.1
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCCh
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQK 172 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~ 172 (425)
..++++..=...-+|||+|-|.| .+..+|+++. |.+|+|..+.+.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp~ 134 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLPE 134 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-HH
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccHh
Confidence 45666666555568999999999 3334444432 568999998753
No 65
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=61.15 E-value=25 Score=31.69 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=38.0
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+.|++.+.-.+.=+|+|+|.|.|. |...|+++ + -++|+|+.+...++.+.+++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCHHHHHHHHHHhc
Confidence 346666653333489999999985 55556666 2 489999999888777766653
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=59.90 E-value=86 Score=32.69 Aligned_cols=59 Identities=7% Similarity=0.143 Sum_probs=41.4
Q ss_pred hHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 120 NQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 120 NqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
...+++.+.....=.|+|+|-|.|. +--.|+++. |..+||+|+.+...++.+.+++...
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3456666653322379999999996 334555542 4589999999999898888777544
No 67
>PRK04148 hypothetical protein; Provisional
Probab=59.51 E-value=52 Score=29.34 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=28.6
Q ss_pred HHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHH
Q 014413 123 IIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEV 174 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~ 174 (425)
|.+....++.-.|+|.|+|.|. ++-+.|++. | ..+|+|+.+...
T Consensus 8 l~~~~~~~~~~kileIG~GfG~---~vA~~L~~~--G---~~ViaIDi~~~a 51 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYF---KVAKKLKES--G---FDVIVIDINEKA 51 (134)
T ss_pred HHHhcccccCCEEEEEEecCCH---HHHHHHHHC--C---CEEEEEECCHHH
Confidence 4455554445679999999884 445556643 3 588888866553
No 68
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=56.59 E-value=14 Score=36.54 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=22.5
Q ss_pred cCCceEEEEeccCCCCcchHHHHHHHhc
Q 014413 128 EGEKVVHVIDLNAAEPAQWIALIQALST 155 (425)
Q Consensus 128 ~g~~~VHIIDf~i~~G~QWp~Liq~La~ 155 (425)
.|.+.+||||+|-+.+.+ ..+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999888888 556777776
No 69
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=56.53 E-value=1.7e+02 Score=27.32 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=35.2
Q ss_pred CceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEe
Q 014413 130 EKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFN 196 (425)
Q Consensus 130 ~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~ 196 (425)
.+..+|+|+|.|.|.- ...++.+ + .++|+++.+...++.+.+++.. .++..+|.
T Consensus 47 ~~~~~vLdiG~G~G~~----~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~ 100 (233)
T PRK05134 47 LFGKRVLDVGCGGGIL----SESMARL--G---ADVTGIDASEENIEVARLHALE----SGLKIDYR 100 (233)
T ss_pred CCCCeEEEeCCCCCHH----HHHHHHc--C---CeEEEEcCCHHHHHHHHHHHHH----cCCceEEE
Confidence 3456899999998853 3344443 2 4799999998877766665432 34444554
No 70
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=56.49 E-value=75 Score=30.98 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhhccchhhhHHHhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHH
Q 014413 96 SEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVL 175 (425)
Q Consensus 96 ~~~~~a~~~f~~~~P~~~fa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l 175 (425)
.+.+.+.+.|.+.-=|-.+.. ..++.|.+.+. .+.-+|+|+|.|.|.--..|.+.+... ....++||+.+...+
T Consensus 52 ~~~~~ar~~fl~~g~y~~l~~-~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l 125 (272)
T PRK11088 52 KEMMQARRAFLDAGHYQPLRD-AVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAI 125 (272)
T ss_pred HHHHHHHHHHHHCCChHHHHH-HHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHH
Confidence 455666666655322222221 12222333332 334579999999996444444433221 125799999998888
Q ss_pred HHHHHH
Q 014413 176 DQMAHR 181 (425)
Q Consensus 176 ~~tg~r 181 (425)
+.+.++
T Consensus 126 ~~A~~~ 131 (272)
T PRK11088 126 KYAAKR 131 (272)
T ss_pred HHHHHh
Confidence 766543
No 71
>PRK07402 precorrin-6B methylase; Provisional
Probab=56.05 E-value=40 Score=31.05 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=41.0
Q ss_pred HHHhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 116 FVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 116 ~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
.-...+.+++.+.-.+.=.|+|+|-|.|. +. ..++... |.-++|+|+.+.+.++.+.+++.++
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~---~~la~~~---~~~~V~~vD~s~~~~~~a~~n~~~~ 87 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGT-IP---VEAGLLC---PKGRVIAIERDEEVVNLIRRNCDRF 87 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HH---HHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 33445556666653343469999999996 22 2233221 2258999999998888887777654
No 72
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=55.97 E-value=1.5e+02 Score=29.78 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=35.4
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc-eEEe
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP-FQFN 196 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~-FeF~ 196 (425)
-+|+|++-|.|. +--.||++ + -+++||+.+...++.+.++. +..|++ .+|.
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~--~---~~V~gvD~s~~av~~A~~n~----~~~~l~~v~~~ 226 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP--G---MQLTGIEISAEAIACAKQSA----AELGLTNVQFQ 226 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc--C---CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEE
Confidence 579999999995 33445553 2 38999999998888776654 344553 4553
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=54.50 E-value=2e+02 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=26.8
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQ 177 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~ 177 (425)
-.|+|.|-|.|. =+..||++ | ..+|||+.+...++.
T Consensus 39 ~rvL~~gCG~G~----da~~LA~~--G---~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 39 SRVLVPLCGKSL----DMLWLAEQ--G---HEVLGVELSELAVEQ 74 (218)
T ss_pred CeEEEeCCCChH----hHHHHHhC--C---CeEEEEccCHHHHHH
Confidence 478999988883 23445654 3 789999999888775
No 74
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=52.30 E-value=67 Score=31.24 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 123 IIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
|++++.-.+.=+|+|+|-|.|. |...|+.+. -++|+|+.+...++.+.+++.
T Consensus 21 iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 21 IVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred HHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECCHHHHHHHHHHhc
Confidence 3344333344579999999995 555566652 379999999887777666653
No 75
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=51.95 E-value=1e+02 Score=31.62 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=31.1
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHH
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHR 181 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~r 181 (425)
...+|+|+|.|.|.-.. .++++.++ .++|+++.+.+.++.+.++
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEECCHHHHHHHHHh
Confidence 45689999999996333 34433222 5899999998888776665
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=49.56 E-value=37 Score=30.39 Aligned_cols=43 Identities=7% Similarity=0.146 Sum_probs=32.4
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
-.|+|+|.|.|. +...|+.+ + .++|+++.+.+.++.+.+++..
T Consensus 25 ~~vLd~G~G~G~----~~~~l~~~--~---~~v~~~D~s~~~~~~a~~~~~~ 67 (188)
T PRK14968 25 DRVLEVGTGSGI----VAIVAAKN--G---KKVVGVDINPYAVECAKCNAKL 67 (188)
T ss_pred CEEEEEccccCH----HHHHHHhh--c---ceEEEEECCHHHHHHHHHHHHH
Confidence 469999999997 45555655 2 5899999998888777666543
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=49.26 E-value=46 Score=31.07 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
.+++.++-.+.-+|+|+|-|.|..=..|.+.+ . ++ -++++|+.+.+.++.+.+++.+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-~~----g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-RR----GKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-CC----CEEEEEeCCHHHHHHHHHHHHH
Confidence 45566654444579999999987443333333 1 11 3799999998888888777754
No 78
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=48.19 E-value=57 Score=29.69 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=31.7
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
-.|+|+|-|.|. +--.++.+ + |..++|+++.+...++.+.++..++
T Consensus 33 ~~vLDiG~G~G~----~~~~la~~--~-~~~~v~~vD~s~~~~~~a~~n~~~~ 78 (187)
T PRK08287 33 KHLIDVGAGTGS----VSIEAALQ--F-PSLQVTAIERNPDALRLIKENRQRF 78 (187)
T ss_pred CEEEEECCcCCH----HHHHHHHH--C-CCCEEEEEECCHHHHHHHHHHHHHh
Confidence 369999999983 33333443 2 3479999999988887776665443
No 79
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=47.67 E-value=78 Score=31.74 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=36.1
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
.|++++.-.+.=.|+|+|-|.|.- -..|+.+. -++++|+.+.+.++.+.+++...
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~L----T~~Ll~~~-----~~V~avEiD~~li~~l~~~~~~~ 81 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNL----TEKLLQLA-----KKVIAIEIDPRMVAELKKRFQNS 81 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHH----HHHHHHhC-----CcEEEEECCHHHHHHHHHHHHhc
Confidence 344444433334799999998864 34445442 26999999988888777766543
No 80
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=47.66 E-value=1.8e+02 Score=27.52 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=26.6
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQ 177 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~ 177 (425)
-.|+|+|-|.|. =...||++ | ..+|||+.+...++.
T Consensus 36 ~rvLd~GCG~G~----da~~LA~~--G---~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 36 ARVFVPLCGKSL----DLAWLAEQ--G---HRVLGVELSEIAVEQ 71 (213)
T ss_pred CeEEEeCCCchh----HHHHHHhC--C---CeEEEEeCCHHHHHH
Confidence 489999999883 23345654 3 789999999887774
No 81
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=47.33 E-value=45 Score=37.12 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=59.4
Q ss_pred cCCCC-cchHHHHHHHhc---CCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCcc-ccccC
Q 014413 139 NAAEP-AQWIALIQALST---RPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFD-KLRVK 213 (425)
Q Consensus 139 ~i~~G-~QWp~Liq~La~---R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~-~L~~~ 213 (425)
|+..| -||-+|.++|.. +.++.|.+.|+..++..+.. |-+-|.+.|+.-|++-+|.. .+++|..+ .=++.
T Consensus 354 g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~eED~--T~~YL~d~a~qAG~~t~~~~---~iedL~~d~~G~~~ 428 (619)
T PRK10507 354 YKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENY--HAQFMQQALHQAGFETKILR---GLDELRWDAAGQLI 428 (619)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCCCcHH--HHHHHHHHHHHCCCceEEec---CHHHeEECCCCcEE
Confidence 44444 688888887764 23344679999887765544 77779999999999998863 14555443 21244
Q ss_pred CCceEEEEeccccchh
Q 014413 214 TGEALAISSVLQLHSL 229 (425)
Q Consensus 214 ~gEalaVn~~~~Lh~L 229 (425)
++|-..|+++|+|+..
T Consensus 429 D~dg~~I~~vfKlyPW 444 (619)
T PRK10507 429 DGDGRLVNCVWKTWAW 444 (619)
T ss_pred CCCCCEeeeeeecccH
Confidence 5566789999998755
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=47.05 E-value=51 Score=31.76 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=34.4
Q ss_pred cCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 128 EGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 128 ~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
...+..+|+|+|.|.|.=-. .|+... |..++|+++.+...++.+.+++.
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~----~la~~~---~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIAL----ALAKER---PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cccCCCEEEEEcCcHHHHHH----HHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 33456789999999995333 333322 34789999999888887777665
No 83
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=46.30 E-value=54 Score=32.30 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=31.6
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
.+|+|+|.|.|.--.. |+... |..++|+++.+.+.++.+.++..
T Consensus 116 ~~vLDlG~GsG~i~l~----la~~~---~~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 116 LHILDLGTGSGCIALA----LAYEF---PNAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred CEEEEEeccHhHHHHH----HHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 5899999999954333 44321 23689999999888887776643
No 84
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=44.41 E-value=64 Score=29.78 Aligned_cols=46 Identities=7% Similarity=0.216 Sum_probs=33.3
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
.--|+|+|.|.|. ++-.||.+. |...++||+.+.+.++.+.+++.+
T Consensus 17 ~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~~~~~l~~a~~~~~~ 62 (194)
T TIGR00091 17 APLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEIHTPIVLAANNKANK 62 (194)
T ss_pred CceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEeeHHHHHHHHHHHHH
Confidence 3479999999984 344555442 447899999998888877766643
No 85
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=43.27 E-value=44 Score=30.20 Aligned_cols=63 Identities=16% Similarity=0.277 Sum_probs=42.7
Q ss_pred hhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc
Q 014413 119 TNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP 192 (425)
Q Consensus 119 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~ 192 (425)
+-..+++.+...+.=+|+|+|.|.|.- =-.|+.+ -|..++|+++.+...++.+.+++. ..++.
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i----~~~la~~---~~~~~v~~vDi~~~a~~~a~~n~~----~n~~~ 81 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVI----SLALAKR---GPDAKVTAVDINPDALELAKRNAE----RNGLE 81 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHH----HHHHHHT---STCEEEEEEESBHHHHHHHHHHHH----HTTCT
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHH----HHHHHHh---CCCCEEEEEcCCHHHHHHHHHHHH----hcCcc
Confidence 444666666654656799999999942 2234443 246889999999888887776644 34555
No 86
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=43.19 E-value=1.1e+02 Score=29.27 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=46.7
Q ss_pred HHHH-hhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEe
Q 014413 122 AIIE-AMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFN 196 (425)
Q Consensus 122 aILe-A~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~ 196 (425)
++|. ++.....=+++|.|-+.| .|=+.||.|. =|+|+++-+...++.+.+||...+ +|.|.--
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G----~lT~~LA~rC-----d~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~ 96 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIG----VLTERLAPRC-----DRLLAVDISPRALARARERLAGLP---HVEWIQA 96 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTS----HHHHHHGGGE-----EEEEEEES-HHHHHHHHHHTTT-S---SEEEEES
T ss_pred HHHHHhcCccccceeEecCCCcc----HHHHHHHHhh-----CceEEEeCCHHHHHHHHHhcCCCC---CeEEEEC
Confidence 4455 577888889999998888 5888999884 589999999999999999998763 4544443
No 87
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=43.15 E-value=58 Score=29.42 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=31.9
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
.|+|+|.|.|. +...++.+ ++ ++|+++.+.+.++.+.+++.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFAVKELRENAK 62 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHHHHHHHHHHH
Confidence 49999999993 44556654 33 89999999998888888775
No 88
>PRK00811 spermidine synthase; Provisional
Probab=42.55 E-value=3.1e+02 Score=27.09 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=33.4
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAE 187 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~ 187 (425)
+|+|+|.|.|. +...+.+++ +.-+||+|+-+.+.++.+.+.+.++..
T Consensus 79 ~VL~iG~G~G~----~~~~~l~~~---~~~~V~~VEid~~vv~~a~~~~~~~~~ 125 (283)
T PRK00811 79 RVLIIGGGDGG----TLREVLKHP---SVEKITLVEIDERVVEVCRKYLPEIAG 125 (283)
T ss_pred EEEEEecCchH----HHHHHHcCC---CCCEEEEEeCCHHHHHHHHHHhHHhcc
Confidence 67999988873 344444443 235899999999988888877766543
No 89
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=42.44 E-value=62 Score=32.62 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.1
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
+.+++++.-.+.-.+||...|.|..=-.+++.+ ||..++.||+.+.+.++.+.++|.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 456677754444479999999998766666544 3446899999999999999988865
No 90
>PHA03411 putative methyltransferase; Provisional
Probab=42.37 E-value=51 Score=33.01 Aligned_cols=72 Identities=13% Similarity=0.004 Sum_probs=45.8
Q ss_pred HHHHHhhccchhhhHHHhhHHHHHhh--cCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHH
Q 014413 102 RKLFFDMFPFLKVAFVLTNQAIIEAM--EGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMA 179 (425)
Q Consensus 102 ~~~f~~~~P~~~fa~~taNqaILeA~--~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg 179 (425)
+..|..-. +...+.|++.+.|+..+ .....-+|+|+|-|.|. +...++.+.++ .+||+|+.+...++.+.
T Consensus 34 ~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~~---~~V~gVDisp~al~~Ar 105 (279)
T PHA03411 34 YNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCKP---EKIVCVELNPEFARIGK 105 (279)
T ss_pred HHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCCC---CEEEEEECCHHHHHHHH
Confidence 44555555 55567777777777443 22333479999999993 33344444322 69999999988776665
Q ss_pred HH
Q 014413 180 HR 181 (425)
Q Consensus 180 ~r 181 (425)
++
T Consensus 106 ~n 107 (279)
T PHA03411 106 RL 107 (279)
T ss_pred Hh
Confidence 53
No 91
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=42.29 E-value=33 Score=33.84 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=19.5
Q ss_pred cCCceEEEEeccCCCCcchHHHHHHHhcCCC
Q 014413 128 EGEKVVHVIDLNAAEPAQWIALIQALSTRPE 158 (425)
Q Consensus 128 ~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~ 158 (425)
.|.+.+||||+ +.+ +. .+|..+.+..+
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~ 76 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYP 76 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCC
Confidence 58999999999 555 66 56666665443
No 92
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=41.15 E-value=2.1e+02 Score=30.09 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 124 IEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 124 LeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
++.+...+.-+|+|+|-|.|. +--.||.+. -+++||+.+.+.++.+.+++.
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 333443344589999999995 333466542 389999999999888776654
No 93
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=40.99 E-value=3.2e+02 Score=28.82 Aligned_cols=67 Identities=10% Similarity=0.194 Sum_probs=40.6
Q ss_pred hHHHHHHHhHcCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHHH
Q 014413 271 KMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKN 344 (425)
Q Consensus 271 ~~~~~L~~ir~L~P~vvvl~E~e~~hn~~~F~~RF~eal~~YsalFdsLda~~~~~~~eR~~iE~~~~g~eI~n 344 (425)
.++-....|...+|+.|+..|.+- ..+++.+=.++..| ...-+...++.-.||...=.+-+++.+.+
T Consensus 188 g~elk~~li~~ikP~~Ii~l~~~~---~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 188 GLELKRALIDAIKPDLIIALERAN---ELSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred HHHHHHHHHhhcCCCEEEEecccc---ccchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 345666778999999999998653 33334343444444 34445555666677776544445555554
No 94
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=40.79 E-value=62 Score=31.22 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=37.4
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHH
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRL 182 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL 182 (425)
+.|++++...+.=.|+|+|-|.|. |...|+.+. + ++++|+.+.+.++.+.+++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCHHHHHHHHHHh
Confidence 455666655555689999999996 666666653 2 3999999888776665544
No 95
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=40.17 E-value=46 Score=33.07 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=34.4
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCC
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDI 191 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v 191 (425)
||+|+|.|.|..=..|... + |..+|+|++-+.+.++-+.++. +..|+
T Consensus 113 ~ilDlGTGSG~iai~la~~------~-~~~~V~a~Dis~~Al~~A~~Na----~~~~l 159 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE------G-PDAEVIAVDISPDALALARENA----ERNGL 159 (280)
T ss_pred cEEEecCChHHHHHHHHhh------C-cCCeEEEEECCHHHHHHHHHHH----HHcCC
Confidence 9999999999644333322 2 3389999999999998887774 44565
No 96
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=40.07 E-value=1e+02 Score=31.49 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=35.8
Q ss_pred cCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 128 EGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 128 ~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
...+.+.|+|+|.|.|.=-+.| +.+.. ..++||++-+...++.+..++..
T Consensus 111 p~~~~~~vLDIGtGag~I~~lL----a~~~~---~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 111 PRGANVRVLDIGVGANCIYPLI----GVHEY---GWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCCCCceEEEecCCccHHHHHH----HhhCC---CCEEEEEeCCHHHHHHHHHHHHh
Confidence 3446789999999988544443 43322 37899999998888888776654
No 97
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=38.88 E-value=1.7e+02 Score=21.97 Aligned_cols=39 Identities=31% Similarity=0.442 Sum_probs=27.1
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAH 180 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~ 180 (425)
+|+|+|-|.|. +...++. .+..++++++.+...++.+.+
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCHHHHHHHHH
Confidence 47999998884 4555554 234799999988776655543
No 98
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=38.64 E-value=62 Score=30.18 Aligned_cols=47 Identities=9% Similarity=0.242 Sum_probs=33.9
Q ss_pred ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 131 KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 131 ~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
+.-.|+|+|-|.|.-...| +.+. |.-++|||+.+.+.++.+.+++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~~---p~~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKAN---PDINFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHHC---CCccEEEEEechHHHHHHHHHHHH
Confidence 4457999999999654444 3332 346899999999988877776654
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=37.79 E-value=86 Score=29.14 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 123 IIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
+++.+.-.+.-.|+|+|.|.|.... +|..+. + ++++|+.+.+.++.+.+++.++
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~~~~~~~a~~~~~~~ 123 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERIKTLQWEAKRRLKQL 123 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCCHHHHHHHHHHHHHC
Confidence 3455554555679999999997433 333332 1 6999999988777777776654
No 100
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=37.76 E-value=69 Score=30.87 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=39.9
Q ss_pred hHHHhhHHHHHhhcC--CceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 115 AFVLTNQAIIEAMEG--EKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 115 a~~taNqaILeA~~g--~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+|..+.+..++++.. .+.-.|+|+|-|.|. +.-.++.. |+. +++||+.+...++.+.+++.
T Consensus 101 g~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 101 GTHPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH
Confidence 444445556666652 234579999999883 33344443 332 59999999998888877654
No 101
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=37.11 E-value=73 Score=31.64 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=34.3
Q ss_pred CCCeEEEeEecCC----hHHHHHHHHHHHHHHHhcCCceEEee
Q 014413 159 GPPHLRITGIHPQ----KEVLDQMAHRLTEEAEKLDIPFQFNS 197 (425)
Q Consensus 159 gpP~LRIT~i~~~----~~~l~~tg~rL~~~A~~l~v~FeF~~ 197 (425)
|+|..|||...++ .+.|+++.+.+.+-++.+|....|+-
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 7899999999876 34689999999999999999999974
No 102
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.91 E-value=1e+02 Score=29.14 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=37.8
Q ss_pred hhcCCceEEEEeccCCCCc---chHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHH
Q 014413 126 AMEGEKVVHVIDLNAAEPA---QWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEA 186 (425)
Q Consensus 126 A~~g~~~VHIIDf~i~~G~---QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A 186 (425)
+++=.+.=|++|+|.|.|. +|. + -.|+.|+++|+.+.+.++.+.++..+|.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a--------~--~~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWA--------L--AGPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHH--------H--hCCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 3443333399999999884 443 1 1367899999999999999999988774
No 103
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=35.71 E-value=98 Score=28.98 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=38.3
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
.+++.+.-.+.-+|+|+|-|.|..=. .|+.+. ++.-++++|+.+.+.++.+.+++.+
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~----~la~~~--~~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAA----VLAEIV--GRDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHH----HHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 45566654555689999999886432 334332 2235899999998888877777654
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=35.36 E-value=84 Score=31.09 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHhhHHHHHhhcC--CceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 116 FVLTNQAIIEAMEG--EKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 116 ~~taNqaILeA~~g--~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+..+.+..++.++. .+.-.|+|+|-|.|. |...++.. + . -++++|+.+...++.+.+++.
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECCHHHHHHHHHHHH
Confidence 44556666666542 233579999999984 33444543 2 2 389999999998888877654
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=35.32 E-value=83 Score=31.87 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=46.5
Q ss_pred HhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 118 LTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 118 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
..-+.++|.+.....-+|+|||-|+|. |==.|+++ .|..+||-++-+...++....+|..-
T Consensus 145 ~GS~lLl~~l~~~~~~~vlDlGCG~Gv----lg~~la~~---~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 145 KGSRLLLETLPPDLGGKVLDLGCGYGV----LGLVLAKK---SPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred hHHHHHHHhCCccCCCcEEEeCCCccH----HHHHHHHh---CCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 356889999987766699999999984 22245554 24799999999999898888877643
No 106
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=34.73 E-value=62 Score=32.64 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=43.0
Q ss_pred HHHHhhcCC---ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc
Q 014413 122 AIIEAMEGE---KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP 192 (425)
Q Consensus 122 aILeA~~g~---~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~ 192 (425)
+++|++... +.-||.|.|.|.|.==.++++.|. .-|+|+|+-+...+.-++++ |+++++.
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-------~~~v~AiD~S~~Ai~La~eN----~qr~~l~ 198 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-------QCTVTAIDVSKAAIKLAKEN----AQRLKLS 198 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-------CceEEEEeccHHHHHHHHHH----HHHHhhc
Confidence 344555432 344899999999987677776665 37999999998888888776 4444554
No 107
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=34.68 E-value=1.2e+02 Score=29.44 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhc-CCCCcHHHHH-HHHHHHHHHHHHHHhhccCccccc-ccchhhHHHHHhhCCCccccCChhHHHHHH
Q 014413 310 YSYAALFDCLESS-VSRTSMERLK-VEKMLFGEEIKNIIACEGFERKER-HEKLEKWIQRFDLACFGNVPLSYCGMLQAR 386 (425)
Q Consensus 310 ~~YsalFdsLda~-~~~~~~eR~~-iE~~~~g~eI~niVA~eG~~R~eR-hE~~~~W~~r~~~aGF~~~~ls~~~~~qa~ 386 (425)
.++...-+-|... .+-..++|.. +|. -.++|-|+|+....+..-+ +-.-.+=...|+.|||..-|+.+ +..|+.
T Consensus 71 d~~eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~ 147 (234)
T COG1500 71 DPDEIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQ 147 (234)
T ss_pred CHHHHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHH
Confidence 3445555566542 3445556555 565 5799999999998776654 66667788899999999998865 567877
Q ss_pred HHhhh
Q 014413 387 RLLQS 391 (425)
Q Consensus 387 ~ll~~ 391 (425)
..++.
T Consensus 148 evlK~ 152 (234)
T COG1500 148 EVLKA 152 (234)
T ss_pred HHHHH
Confidence 77654
No 108
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=33.64 E-value=1.2e+02 Score=28.93 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEE
Q 014413 122 AIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQF 195 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF 195 (425)
.++++++=++.-.|+|+|.|.|.+ .++|-.|..+- -++++|+...+..+.+.++|.+.--. ||.|..
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~-aAlla~lvg~~-----g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~ 129 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQ-AALLAHLVGPV-----GRVVSVERDPELAERARRNLARLGID-NVEVVV 129 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHH-HHHHHHHHSTT-----EEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEE
T ss_pred HHHHHHhcCCCCEEEEecCCCcHH-HHHHHHhcCcc-----ceEEEECccHHHHHHHHHHHHHhccC-ceeEEE
Confidence 456777655556799999998887 56677777533 38999999998888888888876433 444433
No 109
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=33.04 E-value=82 Score=29.65 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=31.9
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
..+|+|+|.|.| .+.-.++.+. |..++||++.+...++.+..++.
T Consensus 88 ~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 88 PLRVLDLGTGSG----AIALALAKER---PDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 358999999999 3344444432 34699999999888877766553
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=32.66 E-value=1.1e+02 Score=32.51 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=35.7
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEE
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQF 195 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF 195 (425)
+|+|+|.|.|..=. .|+.+. |..++|+++.+.+.++.+.+++.. .++..+|
T Consensus 254 rVLDLGcGSG~Iai----aLA~~~---p~a~VtAVDiS~~ALe~AreNa~~----~g~rV~f 304 (423)
T PRK14966 254 RVWDLGTGSGAVAV----TVALER---PDAFVRASDISPPALETARKNAAD----LGARVEF 304 (423)
T ss_pred EEEEEeChhhHHHH----HHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCcEEE
Confidence 79999999996433 333321 246899999999999888877654 3554444
No 111
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=32.51 E-value=86 Score=32.94 Aligned_cols=54 Identities=9% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 123 IIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
+++.+.+.+.-.+||+|-|.| .++-.+|.+. |...++||+-+...++.+.++..
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG----~~ll~lA~~~---P~~~~iGIEI~~~~i~~a~~ka~ 167 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSG----RHLLYQAKNN---PNKLFIGIEIHTPSIEQVLKQIE 167 (390)
T ss_pred HHHHhcCCCCCeEEEEcCccc----HHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHH
Confidence 566777777778999999999 4555666653 45799999999888877766654
No 112
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=31.75 E-value=2.5e+02 Score=26.35 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=44.7
Q ss_pred CcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 014413 143 PAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVS 200 (425)
Q Consensus 143 G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~ 200 (425)
+..||-++..+..+.+.-+.-.|+-.+.+.+.|+.++.-..++++..|.++++..-..
T Consensus 9 S~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd 66 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTD 66 (183)
T ss_dssp SCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESS
T ss_pred hHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 5688988776665555545556777777889999999999999999999999976544
No 113
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.26 E-value=38 Score=34.80 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=17.5
Q ss_pred CCceEEEEeccC--CCCcchHHH
Q 014413 129 GEKVVHVIDLNA--AEPAQWIAL 149 (425)
Q Consensus 129 g~~~VHIIDf~i--~~G~QWp~L 149 (425)
|.+||=|||||+ |.|.|+.--
T Consensus 152 ~~~RVaIiD~DvHHGnGTqeify 174 (340)
T COG0123 152 GVKRVAIIDFDVHHGNGTQEIFY 174 (340)
T ss_pred CCCcEEEEEecCCCChhhHHHHc
Confidence 789999999997 677787654
No 114
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=31.22 E-value=30 Score=27.12 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.8
Q ss_pred cchhhHHHHHhhCCCccccCC
Q 014413 358 EKLEKWIQRFDLACFGNVPLS 378 (425)
Q Consensus 358 E~~~~W~~r~~~aGF~~~~ls 378 (425)
|+..+=+++|.++|++|+.+.
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 345566799999999999873
No 115
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=31.10 E-value=1.4e+02 Score=28.14 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 123 IIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
+++++.-.+.=+|+|+|.|.|..= .+|..+.. +.-++|+|+.+.+.++.+.+++.+.
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t-~~la~~~~-----~~~~V~~vE~~~~~~~~a~~~l~~~ 124 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHA-AVVAEIVG-----KSGKVVTIERIPELAEKAKKTLKKL 124 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHH-HHHHHhcC-----CCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 344444334447999999998733 23332221 2358999999999888888877643
No 116
>PRK03646 dadX alanine racemase; Reviewed
Probab=30.43 E-value=1.1e+02 Score=31.27 Aligned_cols=53 Identities=8% Similarity=0.027 Sum_probs=32.3
Q ss_pred ceEEE-EeccCC-CCcc---hHHHHHHHhcCCCCCCeEEEeEecCC---hHHHHHHHHHHHHHHH
Q 014413 131 KVVHV-IDLNAA-EPAQ---WIALIQALSTRPEGPPHLRITGIHPQ---KEVLDQMAHRLTEEAE 187 (425)
Q Consensus 131 ~~VHI-IDf~i~-~G~Q---Wp~Liq~La~R~~gpP~LRIT~i~~~---~~~l~~tg~rL~~~A~ 187 (425)
-.||| ||-|++ .|+. ++.+++.+.. .|.|+++||.+. .+....+.+.+.+|.+
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSHFARADHPDGISEAMARIEQ 177 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 37899 999975 6764 5666666644 345999999542 1111225556666643
No 117
>PLN03075 nicotianamine synthase; Provisional
Probab=30.29 E-value=5.8e+02 Score=25.79 Aligned_cols=44 Identities=7% Similarity=-0.010 Sum_probs=30.6
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHH
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRL 182 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL 182 (425)
.|+|+|-|.|-=+.-++.+-.- |.-++|||+.+.+.++.+.+.+
T Consensus 126 ~VldIGcGpgpltaiilaa~~~-----p~~~~~giD~d~~ai~~Ar~~~ 169 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHHL-----PTTSFHNFDIDPSANDVARRLV 169 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhcC-----CCCEEEEEeCCHHHHHHHHHHh
Confidence 3899999988666655543331 3349999999998877665544
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=29.71 E-value=1.3e+02 Score=29.17 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=32.5
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
..+|+|+|-|.|. +.-.|+.+. |..++|+++.+...++.+.+++..
T Consensus 87 ~~~vLDlg~GsG~----i~l~la~~~---~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 87 TLVVVDLCCGSGA----VGAALAAAL---DGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred CCEEEEecCchHH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3579999999884 333344332 226899999999988888777643
No 119
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=29.63 E-value=4.1e+02 Score=27.72 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=31.0
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
-+|+|++-|.|.= --.||.+. -+++||+.+.+.++.+.+++..
T Consensus 294 ~~vLDl~cG~G~~----sl~la~~~-----~~V~~vE~~~~av~~a~~n~~~ 336 (431)
T TIGR00479 294 ELVVDAYCGVGTF----TLPLAKQA-----KSVVGIEVVPESVEKAQQNAEL 336 (431)
T ss_pred CEEEEcCCCcCHH----HHHHHHhC-----CEEEEEEcCHHHHHHHHHHHHH
Confidence 4799999998842 22355442 2799999999988888776643
No 120
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=28.83 E-value=33 Score=35.62 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.7
Q ss_pred CCceEEEEeccCC
Q 014413 129 GEKVVHVIDLNAA 141 (425)
Q Consensus 129 g~~~VHIIDf~i~ 141 (425)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 4468999999975
No 121
>PTZ00063 histone deacetylase; Provisional
Probab=28.74 E-value=41 Score=35.77 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHHHhhcCCceEEEEeccC--CCCcchHH
Q 014413 122 AIIEAMEGEKVVHVIDLNA--AEPAQWIA 148 (425)
Q Consensus 122 aILeA~~g~~~VHIIDf~i--~~G~QWp~ 148 (425)
||+++.+..+||=|||||+ |.|.|+.-
T Consensus 156 Ai~~L~~~~~RVliID~DvHHGdGtqe~F 184 (436)
T PTZ00063 156 GILELLKYHARVMYIDIDVHHGDGVEEAF 184 (436)
T ss_pred HHHHHHHhCCeEEEEeCCCCCCcchHHHh
Confidence 4556666668999999997 67777654
No 122
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=28.11 E-value=60 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=23.0
Q ss_pred cCCceEEEEeccC--CCCcchHHHHHHHhcCCC
Q 014413 128 EGEKVVHVIDLNA--AEPAQWIALIQALSTRPE 158 (425)
Q Consensus 128 ~g~~~VHIIDf~i--~~G~QWp~Liq~La~R~~ 158 (425)
.|.+.+||+|++. +.+.+. .+|..+++..+
T Consensus 44 ~g~~~l~ivDLd~~~g~~~n~-~~i~~i~~~~~ 75 (241)
T PRK14024 44 DGAEWIHLVDLDAAFGRGSNR-ELLAEVVGKLD 75 (241)
T ss_pred CCCCEEEEEeccccCCCCccH-HHHHHHHHHcC
Confidence 6889999999983 455555 78888887654
No 123
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=27.98 E-value=1.5e+02 Score=29.59 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=56.6
Q ss_pred HhhHHHHHhhcCC-----ceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc
Q 014413 118 LTNQAIIEAMEGE-----KVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP 192 (425)
Q Consensus 118 taNqaILeA~~g~-----~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~ 192 (425)
-+-.+||.+..++ ..-.+||+|.|....=.-|+++|+.|.. -+|...|+-+.+.|+.+...|..- --.
T Consensus 60 RtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~---~~ryvpiDv~a~iL~~ta~ai~~~----y~~ 132 (321)
T COG4301 60 RTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGS---LLRYVPIDVSASILRATATAILRE----YPG 132 (321)
T ss_pred hhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCC---cceeeeecccHHHHHHHHHHHHHh----CCC
Confidence 4555666666543 2457899999999999999999998743 289999999999999887766533 234
Q ss_pred eEEeeeccc
Q 014413 193 FQFNSVVSK 201 (425)
Q Consensus 193 FeF~~v~~~ 201 (425)
++.+.+...
T Consensus 133 l~v~~l~~~ 141 (321)
T COG4301 133 LEVNALCGD 141 (321)
T ss_pred CeEeehhhh
Confidence 566666553
No 124
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.76 E-value=86 Score=30.25 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=23.7
Q ss_pred hhcCCceEEEEeccCC--CCcchHHHHHHHhcCCC
Q 014413 126 AMEGEKVVHVIDLNAA--EPAQWIALIQALSTRPE 158 (425)
Q Consensus 126 A~~g~~~VHIIDf~i~--~G~QWp~Liq~La~R~~ 158 (425)
...|.+.+||+|++.. ....=..+|..+++..+
T Consensus 42 ~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~ 76 (234)
T PRK13587 42 QFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTT 76 (234)
T ss_pred hccCCCEEEEEECcccccCCcchHHHHHHHHhhcC
Confidence 4458999999999954 22245678999987544
No 125
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=27.49 E-value=1.1e+02 Score=30.64 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=33.3
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTE 184 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~ 184 (425)
.+|+|+|.|.|. +.-.|+.+. |..++|+++-+...++.+.+++..
T Consensus 135 ~~VLDlG~GsG~----iai~la~~~---p~~~V~avDis~~al~~A~~n~~~ 179 (307)
T PRK11805 135 TRILDLCTGSGC----IAIACAYAF---PDAEVDAVDISPDALAVAEINIER 179 (307)
T ss_pred CEEEEEechhhH----HHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 479999999995 333445432 348999999999988887777543
No 126
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=26.14 E-value=1.3e+02 Score=29.75 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=33.4
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
..+|+|+|.|.|. +.-.|+.+. |..++|+++-+...++.+.++..
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis~~al~~A~~n~~ 166 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDISPDALAVAEINIE 166 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 3589999999995 444455442 34799999999998888877754
No 127
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=25.99 E-value=1.3e+02 Score=28.28 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=60.2
Q ss_pred ceEEEEeccCC---CCcchHHHHHHHhcCCCCCCeEEE------eEecCChHHHHHHHHHHHHHHHhcCCceEEeeeccc
Q 014413 131 KVVHVIDLNAA---EPAQWIALIQALSTRPEGPPHLRI------TGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSK 201 (425)
Q Consensus 131 ~~VHIIDf~i~---~G~QWp~Liq~La~R~~gpP~LRI------T~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~ 201 (425)
.+|+||.|=.+ -+..=.++|.+|+.+ | +.+ |+|+.+.+ ...++.-+.+|+++.++.|-|.++...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~---~~~~~y~~t~~IN~dd~-~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--K---FPPVKYQTTTIINADDA-IVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--C---CCcccccceEEEECccc-hhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 47999999754 345677899999654 2 666 88875443 567888999999999988877665432
Q ss_pred ccccCccccccCC-Cce-EEEEeccccc
Q 014413 202 LENLDFDKLRVKT-GEA-LAISSVLQLH 227 (425)
Q Consensus 202 ~e~l~~~~L~~~~-gEa-laVn~~~~Lh 227 (425)
-+......+++.. .++ .+||-.-.+.
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk~GkVv 160 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDKTGKVK 160 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECCCCcEE
Confidence 1221223445543 366 5777665554
No 128
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.69 E-value=3.2e+02 Score=27.09 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=42.6
Q ss_pred hHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 120 NQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 120 NqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
-+.|+++.+..+.-+||.+|-|.| +|=..|+++. -++|+|.-+....+...+++.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~G----aLT~~Ll~~~-----~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLG----ALTEPLLERA-----ARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCC----HHHHHHHhhc-----CeEEEEEeCHHHHHHHHHhcc
Confidence 367888888888889999999988 6888888875 369999988776655555443
No 129
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=25.59 E-value=1.7e+02 Score=31.16 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 014413 147 IALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVS 200 (425)
Q Consensus 147 p~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~ 200 (425)
|.||+.|.+++..-|-=.|+-++-+.+.|+.++....++++..|.+++|..-..
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttd 67 (437)
T cd05298 14 PGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTD 67 (437)
T ss_pred HHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 588999999875444344555566777888899999999999999999887654
No 130
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=25.15 E-value=1.2e+02 Score=21.32 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=18.0
Q ss_pred hHHHHHHHhHcCCCCEEEEE
Q 014413 271 KMDSFLNSLWGLSPKVMVVT 290 (425)
Q Consensus 271 ~~~~~L~~ir~L~P~vvvl~ 290 (425)
.++.++++|+.++|+-++++
T Consensus 19 d~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 19 DREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp BHHHHHHHHHHHCSSEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEe
Confidence 46889999999999999998
No 131
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=24.92 E-value=2.2e+02 Score=26.18 Aligned_cols=48 Identities=4% Similarity=0.038 Sum_probs=31.8
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEE 185 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~ 185 (425)
.-.|+|+|.|.|. +.-.++.+. ++.-++++|+.+.+.++.+.+++..+
T Consensus 41 ~~~vlDlG~GtG~----~s~~~a~~~--~~~~~v~avD~~~~~~~~a~~n~~~~ 88 (198)
T PRK00377 41 GDMILDIGCGTGS----VTVEASLLV--GETGKVYAVDKDEKAINLTRRNAEKF 88 (198)
T ss_pred cCEEEEeCCcCCH----HHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 3479999999982 222233221 12358999999988888777776543
No 132
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=24.62 E-value=1.2e+02 Score=28.18 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=44.7
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHHHHhhh
Q 014413 24 LIHLLLSCA-NHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRIL 77 (425)
Q Consensus 24 l~~lL~~cA-~av~~~~~~~A~~lL~~l~~~as~~Gd~~qRla~yF~~AL~~Rl~ 77 (425)
+..+|+.+. ..+..++...|+.++..|..+..|..+-..|+..-|.+++..=..
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~ 181 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE 181 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHc
Confidence 556666665 778889999999999999999888778889999999999876443
No 133
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=24.54 E-value=1.2e+02 Score=31.86 Aligned_cols=74 Identities=23% Similarity=0.361 Sum_probs=52.7
Q ss_pred EEEeccCC--------CCc----chHHHHHHHhcCCCCCCe-EEEeEecC-------C----hHHHHHHHHHHHHHHHhc
Q 014413 134 HVIDLNAA--------EPA----QWIALIQALSTRPEGPPH-LRITGIHP-------Q----KEVLDQMAHRLTEEAEKL 189 (425)
Q Consensus 134 HIIDf~i~--------~G~----QWp~Liq~La~R~~gpP~-LRIT~i~~-------~----~~~l~~tg~rL~~~A~~l 189 (425)
-.|.||+. +|. -.-.|+++|+..|+-.+= --+|++.. + .+..+++.++|.+||.++
T Consensus 333 FtVEFGLCkq~g~~KayGAGLLSS~gEL~hals~~pei~~FdP~vt~vq~y~it~yQp~YfvaeSFedAk~KlR~fa~ti 412 (461)
T KOG3820|consen 333 FTVEFGLCKQDGELKAYGAGLLSSYGELQHALSDKPEIKDFDPEVTAVQKYLITTYQPLYFVAESFEDAKEKLRKFASTI 412 (461)
T ss_pred EEEEEeeeccCCeeeeechhhhhhHHHHHHHhcCCccccCCCccceeeeeccccccccceeehhhHHHHHHHHHHHHHhC
Confidence 56888863 222 356788999988775442 56777753 1 456899999999999999
Q ss_pred CCceE--EeeecccccccCc
Q 014413 190 DIPFQ--FNSVVSKLENLDF 207 (425)
Q Consensus 190 ~v~Fe--F~~v~~~~e~l~~ 207 (425)
.-||. |++-..++|-|+.
T Consensus 413 ~RPF~VrynpyT~svEvLds 432 (461)
T KOG3820|consen 413 KRPFSVRYNPYTQSVEVLDS 432 (461)
T ss_pred CCCceeeeccccceehhhcC
Confidence 99986 5566667776654
No 134
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=24.52 E-value=2.6e+02 Score=26.32 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=39.0
Q ss_pred eEEE-EeccC---CCCcch---HHHHHHHhcCCCCCCeEEEeEecC------ChHHHHHHHHHHHHHHHhc----CCceE
Q 014413 132 VVHV-IDLNA---AEPAQW---IALIQALSTRPEGPPHLRITGIHP------QKEVLDQMAHRLTEEAEKL----DIPFQ 194 (425)
Q Consensus 132 ~VHI-IDf~i---~~G~QW---p~Liq~La~R~~gpP~LRIT~i~~------~~~~l~~tg~rL~~~A~~l----~v~Fe 194 (425)
.||| ||-|+ -.|+.+ +.+++.+... |.|++.||.. +.+...+.-+.+.++++.+ |++++
T Consensus 118 ~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~~----~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 193 (222)
T cd00635 118 DVLVQVNIGGEESKSGVAPEELEELLEEIAAL----PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNLK 193 (222)
T ss_pred cEEEEEecCCCCCCCCCCHHHHHHHHHHHHcC----CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6888 88874 467754 4555555442 4588888852 2334555666666666655 57777
Q ss_pred Eeee
Q 014413 195 FNSV 198 (425)
Q Consensus 195 F~~v 198 (425)
+-.+
T Consensus 194 ~is~ 197 (222)
T cd00635 194 ELSM 197 (222)
T ss_pred EEEC
Confidence 6555
No 135
>PHA03412 putative methyltransferase; Provisional
Probab=24.48 E-value=95 Score=30.46 Aligned_cols=46 Identities=15% Similarity=-0.036 Sum_probs=31.4
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHH
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHR 181 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~r 181 (425)
...|+|+|.|.|. |.-+++.+-..++..+||+|+-+...++.+.++
T Consensus 50 ~grVLDlG~GSG~----Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n 95 (241)
T PHA03412 50 SGSVVDLCAGIGG----LSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI 95 (241)
T ss_pred CCEEEEccChHHH----HHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence 4589999999883 333444432222357999999998877766654
No 136
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=24.42 E-value=1.7e+02 Score=30.69 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=47.3
Q ss_pred HhhHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEE
Q 014413 118 LTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQF 195 (425)
Q Consensus 118 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF 195 (425)
.+-+.+..++.-.+--.|+|+|.|.|.--..+.+.+- .-+|++++.+...++.+.+++. ++|+..++
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~~l~~~~~n~~----r~g~~~~v 291 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-------QAQVVALDIHEHRLKRVYENLK----RLGLTIKA 291 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHHH----HcCCCeEE
Confidence 3456666666644445899999999977766665441 2489999999998888877764 45776444
No 137
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=24.31 E-value=1.6e+02 Score=27.36 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=39.4
Q ss_pred EEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccc
Q 014413 134 HVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLEN 204 (425)
Q Consensus 134 HIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~ 204 (425)
.|+|+|.|-|+ |.+.=+++. |.+++|-|++..... .-|...++.+|++ ..+.+..++|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~KK~----~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVGKKV----AFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSHHHH----HHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCchHH----HHHHHHHHHhCCC-CEEEEEeeecc
Confidence 59999988775 888878875 458999999885533 2345566777887 34445556665
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=22.85 E-value=2.2e+02 Score=30.04 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=40.1
Q ss_pred hHHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc
Q 014413 120 NQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP 192 (425)
Q Consensus 120 NqaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~ 192 (425)
.+.+.+++.-.+.-+|+|+|.|.|.-=..+.+.+. +.-+||+++.+...++.+.+++. ..|+.
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~------~~~~v~avDi~~~~l~~~~~n~~----~~g~~ 301 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLK------NTGKVVALDIHEHKLKLIEENAK----RLGLT 301 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHH----HcCCC
Confidence 34555555544445799999999854333333221 12489999999888887776654 45664
No 139
>PRK04266 fibrillarin; Provisional
Probab=22.64 E-value=1.9e+02 Score=27.68 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=36.6
Q ss_pred HHhhHHHHHhh---cCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHH
Q 014413 117 VLTNQAIIEAM---EGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHR 181 (425)
Q Consensus 117 ~taNqaILeA~---~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~r 181 (425)
+---.+||..+ .-.+.=+|+|+|.|.|. |. ..|+.+-+ .-+|++++.+.+.+++..++
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~-~~---~~la~~v~---~g~V~avD~~~~ml~~l~~~ 115 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGT-TV---SHVSDIVE---EGVVYAVEFAPRPMRELLEV 115 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccCCCH-HH---HHHHHhcC---CCeEEEEECCHHHHHHHHHH
Confidence 34455566544 22233479999999996 44 34454432 24899999998877765543
No 140
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.60 E-value=3.6e+02 Score=25.73 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=49.3
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecccccccCcccccc
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRV 212 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~~~e~l~~~~L~~ 212 (425)
--|+|+|.|.|. =+++.-.=|| =|+++|+.+.+.++...++..+ ++..++|-. + |.+.+..
T Consensus 47 ~~V~DlG~GTG~------La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~----l~g~v~f~~--~-----dv~~~~~ 107 (198)
T COG2263 47 KTVLDLGAGTGI------LAIGAALLGA--SRVLAVDIDPEALEIARANAEE----LLGDVEFVV--A-----DVSDFRG 107 (198)
T ss_pred CEEEEcCCCcCH------HHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh----hCCceEEEE--c-----chhhcCC
Confidence 458999999994 1222222233 5899999999988877777665 677777743 2 3333433
Q ss_pred CCCceEEEEeccccc
Q 014413 213 KTGEALAISSVLQLH 227 (425)
Q Consensus 213 ~~gEalaVn~~~~Lh 227 (425)
+.+ +++.|=.|...
T Consensus 108 ~~d-tvimNPPFG~~ 121 (198)
T COG2263 108 KFD-TVIMNPPFGSQ 121 (198)
T ss_pred ccc-eEEECCCCccc
Confidence 444 78889887664
No 141
>PTZ00346 histone deacetylase; Provisional
Probab=22.30 E-value=64 Score=34.28 Aligned_cols=40 Identities=3% Similarity=0.013 Sum_probs=27.1
Q ss_pred HHHHHHHhHcCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHH
Q 014413 272 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFD 317 (425)
Q Consensus 272 ~~~~L~~ir~L~P~vvvl~E~e~~hn~~~F~~RF~eal~~YsalFd 317 (425)
...+.+.+++++.+++++.|. ..|. ..+.+++.|..+++-
T Consensus 296 ~~~~~~~l~~~~~plv~vleG--GY~~----~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 296 HGQCVQAVRDLGIPMLALGGG--GYTI----RNVAKLWAYETSILT 335 (429)
T ss_pred HHHHHHHHHhcCCCEEEEeCC--cCCc----cHHHHHHHHHHHHHc
Confidence 456778888888888887763 3332 346677777777744
No 142
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=22.21 E-value=4.2e+02 Score=25.16 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=50.2
Q ss_pred hhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEe-cCChHHHHHHHHHHHHHHHhcCCceEEeeec
Q 014413 126 AMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGI-HPQKEVLDQMAHRLTEEAEKLDIPFQFNSVV 199 (425)
Q Consensus 126 A~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i-~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~ 199 (425)
.+.+.+.|-+||=-|..|.--..+|++|-.... -.+.-+..+ ++..+ +-..+..+.++.+|+|.+|..+.
T Consensus 117 ~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~~---~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 117 LLRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRSE---EDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred HhcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCCH---HHHHHHHHHHHHcCCcEEEEEee
Confidence 344577999999999999999999999987632 223333333 44322 34567788899999999998764
No 143
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=21.95 E-value=2.1e+02 Score=30.30 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=43.3
Q ss_pred h-HHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEEeeecc
Q 014413 146 W-IALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVS 200 (425)
Q Consensus 146 W-p~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF~~v~~ 200 (425)
| |.||+.|..++..-|--.|+-++-+.+.++.++....+.++..|.+++|..-..
T Consensus 12 ~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD 67 (425)
T cd05197 12 FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMD 67 (425)
T ss_pred hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 5 588999999986555455666666777888899999999999999988876544
No 144
>PRK14967 putative methyltransferase; Provisional
Probab=21.75 E-value=2.1e+02 Score=26.84 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=29.8
Q ss_pred EEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHH
Q 014413 133 VHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLT 183 (425)
Q Consensus 133 VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~ 183 (425)
-+|+|+|.|.|.- . ..++.. + .-++|+|+.+...++.+.+++.
T Consensus 38 ~~vLDlGcG~G~~-~---~~la~~--~--~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 38 RRVLDLCTGSGAL-A---VAAAAA--G--AGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CeEEEecCCHHHH-H---HHHHHc--C--CCeEEEEECCHHHHHHHHHHHH
Confidence 5899999999862 2 233433 2 1489999999888876666553
No 145
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.34 E-value=1.2e+02 Score=29.41 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=22.2
Q ss_pred cCCceEEEEeccC--CCCcchHHHHHHHhcCC
Q 014413 128 EGEKVVHVIDLNA--AEPAQWIALIQALSTRP 157 (425)
Q Consensus 128 ~g~~~VHIIDf~i--~~G~QWp~Liq~La~R~ 157 (425)
.|.+.+||+|++- +.+.+. .+|+.+++..
T Consensus 42 ~ga~~lhivDLd~a~~~~~n~-~~i~~i~~~~ 72 (232)
T PRK13586 42 EGYTRIHVVDLDAAEGVGNNE-MYIKEISKIG 72 (232)
T ss_pred CCCCEEEEEECCCcCCCcchH-HHHHHHHhhC
Confidence 6889999999994 445555 7888888743
No 146
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=20.68 E-value=3.5e+02 Score=28.41 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=40.6
Q ss_pred HHHHHhhcCCceEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCceEE
Q 014413 121 QAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQF 195 (425)
Q Consensus 121 qaILeA~~g~~~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~FeF 195 (425)
+.+...+.-.+.=+|+|+|.|.|..=..+.+ +.++ -+||+++.+...++.+.+++ +.+|+..+|
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~----~~~~---~~v~a~D~s~~~l~~~~~n~----~~~g~~~~~ 297 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILE----LAPQ---AQVVALDIDAQRLERVRENL----QRLGLKATV 297 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHH----HcCC---CEEEEEeCCHHHHHHHHHHH----HHcCCCeEE
Confidence 3444555433444799999999973332222 2211 58999999998888777665 445666443
No 147
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=20.63 E-value=7.4e+02 Score=25.58 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=54.6
Q ss_pred HHHHHhhcC----CceEEEEeccCCCCcchHHHHHHHhcCC---CCCCeEEEeEecCC----------hHHHHHHHHHHH
Q 014413 121 QAIIEAMEG----EKVVHVIDLNAAEPAQWIALIQALSTRP---EGPPHLRITGIHPQ----------KEVLDQMAHRLT 183 (425)
Q Consensus 121 qaILeA~~g----~~~VHIIDf~i~~G~QWp~Liq~La~R~---~gpP~LRIT~i~~~----------~~~l~~tg~rL~ 183 (425)
..|=|+.+. ++.+--||+|=....||+-+++.|-.-- -.-|-++|-|++.+ .+.+...=+--.
T Consensus 106 rqlse~A~~~Gk~h~VlLmVd~~DlreG~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~ 185 (353)
T COG3457 106 RQLSEAAVRMGKVHDVLLMVDYGDLREGQWGFLIEDLEETVEEIQQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKK 185 (353)
T ss_pred HHHHHHHHHhCcceeEEEEEEcccccCcchhhHHHHHHHHHHHHhcCCCceEEeeecccccccCcCCCcccHHHHHHHHH
Confidence 344444443 3344568999888889986666553210 11233999999642 333333333333
Q ss_pred HHHHhcCCceEEeeecc--c---ccccCcccc-ccCCCceEEEE
Q 014413 184 EEAEKLDIPFQFNSVVS--K---LENLDFDKL-RVKTGEALAIS 221 (425)
Q Consensus 184 ~~A~~l~v~FeF~~v~~--~---~e~l~~~~L-~~~~gEalaVn 221 (425)
+.+++.|++++--.--+ + +...+.-.+ ++++||++.--
T Consensus 186 ~lE~~~Gi~l~~vsagnats~~~L~~~~~~~inhlriG~al~~g 229 (353)
T COG3457 186 KLEASSGIQLKQVSAGNATSLTLLPMGSLPGINHLRIGEALTGG 229 (353)
T ss_pred HHHHhcCceeEEecCCCccchhhhhcccccccccccccceeecc
Confidence 44566788887643211 2 222222223 37888887644
No 148
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=20.62 E-value=3.4e+02 Score=26.08 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=40.1
Q ss_pred eEEEEeccCCCCcchHHHHHHHhcCCCCCCeEEEeEecCChHHHHHHHHHHHHHHHhcCCc-eEEeeecccccccC
Q 014413 132 VVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIP-FQFNSVVSKLENLD 206 (425)
Q Consensus 132 ~VHIIDf~i~~G~QWp~Liq~La~R~~gpP~LRIT~i~~~~~~l~~tg~rL~~~A~~l~v~-FeF~~v~~~~e~l~ 206 (425)
..|++|+|.|-|+ |.+.=+++. |.+++|-|++..-.. .-|...++.+|++ .++.. .+.|++.
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~Kk~----~FL~~~~~eL~L~nv~i~~--~RaE~~~ 130 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGKKI----AFLREVKKELGLENVEIVH--GRAEEFG 130 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCchHH----HHHHHHHHHhCCCCeEEeh--hhHhhcc
Confidence 4799999988776 777777664 457899998763321 2344456666777 66543 3555554
No 149
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=20.35 E-value=71 Score=22.96 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=12.8
Q ss_pred HHHhhcCCceEEEEecc
Q 014413 123 IIEAMEGEKVVHVIDLN 139 (425)
Q Consensus 123 ILeA~~g~~~VHIIDf~ 139 (425)
+|=-.|+..+|||+|.=
T Consensus 17 LL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 17 LLAWAEHQGRVHIVDTR 33 (43)
T ss_pred EEEEEccCCeEEEEEcc
Confidence 44445788999999974
Done!