BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014414
         (425 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
           Sp. Strain Rha1
 pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
           Sp. Strain Rha1
 pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
           Sp. Strain Rha1
 pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
           Substrate
 pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
           Substrate
 pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
           Substrate
          Length = 460

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 253 GWS-SLGGVVLCVTGAEAMFADLGHFSHLPIRIAFATVVYPCLILA-----------YMG 300
           GW+   GG ++ V   E  F  L      P++    T  Y  LI A           Y+G
Sbjct: 122 GWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVET--YKGLIFANWDADAPDLDTYLG 179

Query: 301 EAAFYTKHKEDLERSFFKAIPEAVFW 326
           EA FY  H  D   +  +AIP    W
Sbjct: 180 EAKFYMDHMLDRTEAGTEAIPGIQKW 205


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,896,366
Number of Sequences: 62578
Number of extensions: 470636
Number of successful extensions: 946
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 25
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)