Query 014414
Match_columns 425
No_of_seqs 114 out of 778
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 90.4 0.73 2.5E-05 45.1 8.2 107 155-272 98-209 (444)
2 4djk_A Probable glutamate/gamm 89.4 0.84 2.9E-05 45.5 7.9 100 181-287 130-239 (511)
3 3l1l_A Arginine/agmatine antip 85.9 1.4 4.8E-05 43.0 7.0 101 162-271 105-211 (445)
4 1nrp_R Receptor based peptide 27.7 18 0.00062 23.1 0.7 16 303-318 5-20 (26)
5 3kcp_B Cellulosome anchoring p 21.7 25 0.00085 32.5 0.7 14 227-240 55-68 (187)
6 2bm3_A Type 2 cohesin, scaffol 21.0 26 0.0009 31.9 0.7 14 227-240 43-56 (166)
7 3bkd_A Transmembrane domain of 20.7 60 0.002 21.0 2.1 15 44-58 8-22 (26)
8 3lbw_A M2 protein; proton chan 20.1 63 0.0022 20.4 2.1 16 44-59 5-20 (23)
9 1nro_R Receptor based peptide 18.7 34 0.0012 22.0 0.6 16 303-318 5-20 (27)
10 3bwz_A Cellulosomal scaffoldin 17.5 35 0.0012 31.4 0.7 13 227-239 41-53 (181)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=90.38 E-value=0.73 Score=45.10 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=56.5
Q ss_pred cccchhhhhhhhccceecccCCCCc-eeehhHHHHHHHHHHHhhhccccccc---chhhHHHHHHHHHHhhhhhhcccCC
Q 014414 155 ILTPAMSVLSAINGIKVKATGLDEN-YTVLIASLMLVGLFALQHFGTHRVGF---LFAPVLLAWLLCISIVGFYNTVRWN 230 (425)
Q Consensus 155 vlTPAiSVLSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~~Q~~GT~kvg~---~F~PIm~vWf~~i~~~GiynI~~~~ 230 (425)
+++.|....+..+-++...|...++ ....+++++++.+..+..+|.+..++ .+..+.++=++.+.+.|+.+. +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 4455555555544444333332221 23457788888888999999877665 444544444444445555543 3
Q ss_pred cceeee-cCHHHHHHHHHhcCccceeeccceeeeecchhhhhc
Q 014414 231 PGVVRA-LSPYYVYIFFKKAGKDGWSSLGGVVLCVTGAEAMFA 272 (425)
Q Consensus 231 P~Vl~A-lnP~yai~f~~~~~~~g~~~LG~v~L~iTG~EALyA 272 (425)
|+-+.. ++|.-.-.+ +..+...+.+.+|-|+.-.
T Consensus 175 ~~~~~~~~~~~g~~~~--------~~~~~~~~~a~~G~e~~~~ 209 (444)
T 3gia_A 175 PSYVIPDLAPSAVSGM--------IFASAIFFLSYMGFGVITN 209 (444)
T ss_dssp GGGTSCCCSHHHHHHH--------HHHHHHGGGGGTHHHHHHT
T ss_pred hhhcCCCCCCcchHHH--------HHHHHHHHHHHHhHHHHHH
Confidence 443322 333211111 1233445678889997643
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=89.39 E-value=0.84 Score=45.52 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=54.6
Q ss_pred eehhHHHHHHHHHHHhhhcccccccchhhH----HHHHHHHHHhhhhhhcccCCccee----eecCHHHHHHHHHhcCcc
Q 014414 181 TVLIASLMLVGLFALQHFGTHRVGFLFAPV----LLAWLLCISIVGFYNTVRWNPGVV----RALSPYYVYIFFKKAGKD 252 (425)
Q Consensus 181 vv~is~~ILv~LF~~Q~~GT~kvg~~F~PI----m~vWf~~i~~~GiynI~~~~P~Vl----~AlnP~yai~f~~~~~~~ 252 (425)
...+++++++++..+.-+|.+..+++..-. +++-++.+...|++.+.+.+|.-+ ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888999999998777644322 222344455567666554333211 1122210 1223
Q ss_pred ceeeccceeeeecchhhhhccCCCCC--Ccceeehhh
Q 014414 253 GWSSLGGVVLCVTGAEAMFADLGHFS--HLPIRIAFA 287 (425)
Q Consensus 253 g~~~LG~v~L~iTG~EALyADlGHF~--~~~Ir~aw~ 287 (425)
+|..+..++.+.+|-|+.-.=-+-.. +|.+..+-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 46667778889999998654444433 345555543
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=85.94 E-value=1.4 Score=42.96 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=47.3
Q ss_pred hhhhhccceecccCCCCc-eeehhHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHhhhhhhcccCCccee-ee
Q 014414 162 VLSAINGIKVKATGLDEN-YTVLIASLMLVGLFALQHFGTHRVGFL---FAPVLLAWLLCISIVGFYNTVRWNPGVV-RA 236 (425)
Q Consensus 162 VLSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~~Q~~GT~kvg~~---F~PIm~vWf~~i~~~GiynI~~~~P~Vl-~A 236 (425)
..+..+=++...|...++ ....+++++++.+..+..+|.+..++. +.++.++=++.+.+.|+. +.+|+.+ ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~ 181 (445)
T 3l1l_A 105 VVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAA 181 (445)
T ss_dssp HHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC
T ss_pred HHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccc
Confidence 334444444334443222 133467777777888888888777764 444443333333334433 3345543 34
Q ss_pred cCHHHHHHHHHhcCccc-eeeccceeeeecchhhhh
Q 014414 237 LSPYYVYIFFKKAGKDG-WSSLGGVVLCVTGAEAMF 271 (425)
Q Consensus 237 lnP~yai~f~~~~~~~g-~~~LG~v~L~iTG~EALy 271 (425)
++|.-. .+..+ +..+...+.+.+|-|+.-
T Consensus 182 ~~~~~~------~~~~~~~~~~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 182 WNVSGL------GTFGAIQSTLNVTLWSFIGVESAS 211 (445)
T ss_dssp -----------------HHHHHHHHHHTTTTTTHHH
T ss_pred cCccCC------ccHHHHHHHHHHHHHHHHhHHHHH
Confidence 444310 00111 223444566778888653
No 4
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=27.66 E-value=18 Score=23.09 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=14.2
Q ss_pred hhhccccccccccccc
Q 014414 303 AFYTKHKEDLERSFFK 318 (425)
Q Consensus 303 A~ll~~p~~~~n~F~~ 318 (425)
++|++||++.-.|||+
T Consensus 5 sfllrnpndkyepfwe 20 (26)
T 1nrp_R 5 SFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhcCCCcccCcccc
Confidence 6899999999999985
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=21.66 E-value=25 Score=32.48 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.4
Q ss_pred ccCCcceeeecCHH
Q 014414 227 VRWNPGVVRALSPY 240 (425)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (425)
++|||+||+|+||.
T Consensus 55 IKYDP~VLqaV~p~ 68 (187)
T 3kcp_B 55 IVYDPKVLMAVDPE 68 (187)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeEChhHeeecccC
Confidence 46899999999996
No 6
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.97 E-value=26 Score=31.85 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.2
Q ss_pred ccCCcceeeecCHH
Q 014414 227 VRWNPGVVRALSPY 240 (425)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (425)
++|||+||+|+||.
T Consensus 43 IKYDP~VLqaVn~~ 56 (166)
T 2bm3_A 43 IVYDPKVLMAVDPE 56 (166)
T ss_dssp EECCTTTEEEECTT
T ss_pred EEECccceEeecCC
Confidence 45899999999994
No 7
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=20.69 E-value=60 Score=21.00 Aligned_cols=15 Identities=33% Similarity=0.990 Sum_probs=13.3
Q ss_pred hhhHHhhHHHHHHHH
Q 014414 44 DDEILGVFSLVFWTL 58 (425)
Q Consensus 44 ~~~ilGvlSlIfWtL 58 (425)
..+++|++-||.|.+
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 568999999999976
No 8
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=20.08 E-value=63 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.802 Sum_probs=13.6
Q ss_pred hhhHHhhHHHHHHHHH
Q 014414 44 DDEILGVFSLVFWTLT 59 (425)
Q Consensus 44 ~~~ilGvlSlIfWtLt 59 (425)
..+++|++-||.|-+-
T Consensus 5 aa~iigIlHLiLwIlD 20 (23)
T 3lbw_A 5 AASIIAILHLILWILD 20 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4689999999999763
No 9
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=18.69 E-value=34 Score=22.02 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.7
Q ss_pred hhhccccccccccccc
Q 014414 303 AFYTKHKEDLERSFFK 318 (425)
Q Consensus 303 A~ll~~p~~~~n~F~~ 318 (425)
-+|++||++.-.|||+
T Consensus 5 pfllrnpndkyepfwe 20 (27)
T 1nro_R 5 PFLLRNPNDKYEPFWE 20 (27)
T ss_pred cccccCCCcccCcccc
Confidence 4789999999999985
No 10
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=17.55 E-value=35 Score=31.41 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=11.8
Q ss_pred ccCCcceeeecCH
Q 014414 227 VRWNPGVVRALSP 239 (425)
Q Consensus 227 ~~~~P~Vl~AlnP 239 (425)
++|||+||+|+||
T Consensus 41 IKYDP~VLQaV~~ 53 (181)
T 3bwz_A 41 MKYDPAVLQPVTS 53 (181)
T ss_dssp EECCTTTEEEECT
T ss_pred cccChhHeeeecC
Confidence 4689999999999
Done!