Query 014414
Match_columns 425
No_of_seqs 114 out of 778
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 11:09:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 17.5 16 0.0012 30.9 0.7 14 227-240 39-52 (162)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 17.1 19 0.0014 25.4 0.9 40 292-333 15-54 (57)
3 d1tyja1 b.2.2.2 (A:2-171) Cell 13.5 20 0.0015 30.6 0.2 14 227-240 37-50 (170)
4 d1zv9a1 b.2.2.2 (A:3-173) Cell 11.8 29 0.0021 29.5 0.7 13 227-239 39-51 (171)
5 d1krha2 c.25.1.2 (A:206-338) B 7.3 1.4E+02 0.01 22.2 3.2 41 343-383 16-56 (133)
6 d2h9fa2 d.21.1.4 (A:187-395) H 6.6 1.5E+02 0.011 25.4 3.3 36 333-370 133-168 (209)
7 d2bnma1 a.35.1.3 (A:6-76) Hydr 6.5 48 0.0035 23.7 -0.1 15 73-87 37-51 (71)
8 d1jb0i_ f.23.17.1 (I:) Subunit 6.1 20 0.0015 23.5 -2.2 20 376-395 13-32 (38)
9 d1tvca2 c.25.1.2 (A:111-251) M 5.0 2.6E+02 0.019 20.8 3.6 41 344-384 20-60 (141)
10 d2yvxa3 f.57.1.1 (A:276-448) M 4.7 1.1E+02 0.008 25.4 1.0 108 291-411 11-120 (173)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=17.52 E-value=16 Score=30.94 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.4
Q ss_pred ccCCcceeeecCHH
Q 014414 227 VRWNPGVVRALSPY 240 (425)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (425)
++|||+||+|+||.
T Consensus 39 IKYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 39 IVYDPKVLMAVDPE 52 (162)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeCHHHhcccccC
Confidence 46899999999996
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.06 E-value=19 Score=25.38 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHHhhccchhhhccccccccccccccccccchHHHHHHHH
Q 014414 292 PCLILAYMGEAAFYTKHKEDLERSFFKAIPEAVFWPVFIIAT 333 (425)
Q Consensus 292 P~LiL~Y~GQgA~ll~~p~~~~n~F~~~iP~~~~~p~~vlAt 333 (425)
-++++--++=..|+.++.+. |.-|.++|+.++|-.+-+.|
T Consensus 15 ~~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 34444445566677776543 33479999999997765543
No 3
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=13.48 E-value=20 Score=30.56 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=12.4
Q ss_pred ccCCcceeeecCHH
Q 014414 227 VRWNPGVVRALSPY 240 (425)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (425)
++|||+||+|+||.
T Consensus 37 IKYDP~vLQ~V~p~ 50 (170)
T d1tyja1 37 IKYNTTYLQPWDTI 50 (170)
T ss_dssp EECCTTTEEEEETT
T ss_pred eeeChHHeecccCC
Confidence 46899999999996
No 4
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=11.83 E-value=29 Score=29.55 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=11.6
Q ss_pred ccCCcceeeecCH
Q 014414 227 VRWNPGVVRALSP 239 (425)
Q Consensus 227 ~~~~P~Vl~AlnP 239 (425)
++|||+||+|+||
T Consensus 39 IKYDP~vLQ~V~~ 51 (171)
T d1zv9a1 39 MKYDPAVLQPVTS 51 (171)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChHHeeccCC
Confidence 4689999999998
No 5
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=7.27 E-value=1.4e+02 Score=22.16 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=32.6
Q ss_pred hhhchhhHHHHHHHcCCCcceeEEecCCcccCceeehhhHH
Q 014414 343 IISATFSIISQCRALSCFPRVKIMHTSNQIHGQIYIPEMNW 383 (425)
Q Consensus 343 ~Isg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw 383 (425)
=||-..|+++++.+.+.-+++++.|..++..--+|-.++..
T Consensus 16 GItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~ 56 (133)
T d1krha2 16 GIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDA 56 (133)
T ss_dssp GHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHH
Confidence 36667888999999998888999999988776667666544
No 6
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.60 E-value=1.5e+02 Score=25.38 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHhhhhhhhchhhHHHHHHHcCCCcceeEEecCC
Q 014414 333 TLATAVASQAIISATFSIISQCRALSCFPRVKIMHTSN 370 (425)
Q Consensus 333 tlAtIIASQA~Isg~FSii~Qai~Lg~fPr~kI~hTS~ 370 (425)
|-|--+|+=+.|-| |+.+|..+-+-=..++|-|.|-
T Consensus 133 Tgav~la~Aa~ipG--Tv~~~~~~~~~~~~v~I~HPsG 168 (209)
T d2h9fa2 133 TAAVAIGTAAAIPG--TLVNLAAGGGERSAVRFGHPSG 168 (209)
T ss_dssp HHHHHHHHHHHSTT--SHHHHHTTSSCCSEEEEEETTE
T ss_pred HHHHHHHHhhccCC--chHHhhcCCCCCCeEEEEcCCc
Confidence 34444555556666 3556665543333467777653
No 7
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=6.52 E-value=48 Score=23.75 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=12.5
Q ss_pred ecCCCCchHHHHHHH
Q 014414 73 ADDNGEGGTFALYSI 87 (425)
Q Consensus 73 adn~GEGG~fAL~sL 87 (425)
|=.|||||-+.|..|
T Consensus 37 awengeggeltltql 51 (71)
T d2bnma1 37 AWENGEGGELTLTQL 51 (71)
T ss_dssp HHHTTTCTTCBHHHH
T ss_pred HhhcCCCceeeHHHH
Confidence 347999999999876
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.09 E-value=20 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=15.3
Q ss_pred eeehhhHHHHHHHHHhheee
Q 014414 376 IYIPEMNWILMIFCLGVVVG 395 (425)
Q Consensus 376 IYIP~vNw~Lmi~~i~vv~~ 395 (425)
|.||.+-|++-+.++.+...
T Consensus 13 I~iPvv~wl~p~vvMglLFi 32 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhe
Confidence 78999999998877665443
No 9
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}
Probab=5.01 E-value=2.6e+02 Score=20.78 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=30.6
Q ss_pred hhchhhHHHHHHHcCCCcceeEEecCCcccCceeehhhHHH
Q 014414 344 ISATFSIISQCRALSCFPRVKIMHTSNQIHGQIYIPEMNWI 384 (425)
Q Consensus 344 Isg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~ 384 (425)
|+-..|+++++.+.+.-.++++.|..++...-+|-.+++.+
T Consensus 20 ItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l 60 (141)
T d1tvca2 20 LAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSL 60 (141)
T ss_dssp THHHHHHHHHHHHHTCCSCEEEEEECSSSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEeecccchhhhhHHHHHHH
Confidence 45567778888888877788888888777666777777544
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.67 E-value=1.1e+02 Score=25.40 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=60.7
Q ss_pred HHHHHHhhccc--hhhhccccccccccccccccccchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHcCCCcceeEEec
Q 014414 291 YPCLILAYMGE--AAFYTKHKEDLERSFFKAIPEAVFWPVFIIATLATAVASQAIISATFSIISQCRALSCFPRVKIMHT 368 (425)
Q Consensus 291 ~P~LiL~Y~GQ--gA~ll~~p~~~~n~F~~~iP~~~~~p~~vlAtlAtIIASQA~Isg~FSii~Qai~Lg~fPr~kI~hT 368 (425)
.|-|++|.+|+ .|+++++-|+.-+.+ +-=..+.|+ ++-.+.-++||+. +++-|++++|..-+-+ .
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~---~~La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~ 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAV---TALAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---W 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTT---TSCCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---H
Confidence 35566666665 466666555433322 111245555 5667888899986 4778899988643211 1
Q ss_pred CCcccCceeehhhHHHHHHHHHhheeeeCCchhhhhhhhceeh
Q 014414 369 SNQIHGQIYIPEMNWILMIFCLGVVVGFRDTDMIANAYGTSFE 411 (425)
Q Consensus 369 S~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGlaV~ 411 (425)
-+....+..+-.+|=+.+-..+.....+++...++-+=|++..
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~ 120 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLV 120 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 1224456777777776666555544445555445444444333
Done!