Query 014418
Match_columns 425
No_of_seqs 152 out of 231
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 71.1 44 0.0015 33.8 12.7 48 369-416 539-586 (597)
2 3na7_A HP0958; flagellar bioge 62.6 1E+02 0.0034 28.8 13.3 14 412-425 192-205 (256)
3 2zuo_A MVP, major vault protei 59.4 1.7E+02 0.0056 32.9 14.9 40 319-358 715-754 (861)
4 3mq7_A Bone marrow stromal ant 43.3 1.7E+02 0.0057 25.5 10.2 59 339-397 35-101 (121)
5 2eqb_B RAB guanine nucleotide 41.0 1.6E+02 0.0055 24.7 12.7 56 316-380 20-75 (97)
6 3viq_A SWI5-dependent recombin 39.6 1.3E+02 0.0045 25.9 8.3 63 345-407 7-69 (122)
7 3ljm_A Coil Ser L9C; de novo d 38.3 36 0.0012 22.8 3.6 22 341-362 2-25 (31)
8 3oja_A Leucine-rich immune mol 34.8 1.9E+02 0.0065 28.6 10.0 61 325-390 412-472 (487)
9 3f1i_H Hepatocyte growth facto 28.1 2E+02 0.0069 24.2 7.3 47 354-405 50-96 (98)
10 3ni0_A Bone marrow stromal ant 27.6 2.8E+02 0.0095 23.4 8.9 50 339-388 28-88 (99)
11 3vkg_A Dynein heavy chain, cyt 26.7 5.8E+02 0.02 32.8 13.9 68 325-394 1915-1982(3245)
12 3mq9_A Bone marrow stromal ant 26.6 4.7E+02 0.016 25.7 12.2 15 57-71 138-152 (471)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.14 E-value=44 Score=33.84 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCC
Q 014418 369 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPS 416 (425)
Q Consensus 369 ~EK~~NKlA~a~rkAEekRA~AEAkr~ee~~K~~EkA~kiR~TGk~Ps 416 (425)
.+++.+++..+.++-++++....+-+.+-....++.-..+.++.+-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 455557777777777777777766665554444556666666665554
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.59 E-value=1e+02 Score=28.77 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=6.7
Q ss_pred CCCCCCCCcccccC
Q 014418 412 GQIPSSHFTCCGWF 425 (425)
Q Consensus 412 Gk~Pss~f~Cf~c~ 425 (425)
|-+|-.--.|-|||
T Consensus 192 avv~v~~~~C~GC~ 205 (256)
T 3na7_A 192 SIVTIKKQACGGCF 205 (256)
T ss_dssp SEEECBTTBCTTTC
T ss_pred eEEEeeCCccCCCC
Confidence 33454322466665
No 3
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=59.42 E-value=1.7e+02 Score=32.93 Aligned_cols=40 Identities=30% Similarity=0.245 Sum_probs=16.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014418 319 AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIE 358 (425)
Q Consensus 319 AWEeaEkaK~~~RykREEakI~AWEN~QKAKAEA~mrKiE 358 (425)
|=|..-.+|..++..-|.+.|.+=-+...||++|+-.+||
T Consensus 715 aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~ 754 (861)
T 2zuo_A 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhh
Confidence 3333333444444444444444443444444433333333
No 4
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.35 E-value=1.7e+02 Score=25.53 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 014418 339 IQAWESRQKAKLEAE-----MRRIEAEVEQIRAQ---AQAKMVKKISMSRQRSEEKRAAAEARKSRD 397 (425)
Q Consensus 339 I~AWEN~QKAKAEA~-----mrKiE~KLEkkRA~---a~EK~~NKlA~a~rkAEekRA~AEAkr~ee 397 (425)
-++||.+..+.|+|. +..|-.-|+++++. -++++..+|....++-+++-+.+|..|.+-
T Consensus 35 TqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 35 TEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357777777777665 34455566666655 366778888888888887777777655443
No 5
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.05 E-value=1.6e+02 Score=24.69 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=41.3
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014418 316 RASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 380 (425)
Q Consensus 316 rAaAWEeaEkaK~~~RykREEakI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKlA~a~ 380 (425)
..+-|+ .|..++..++.+ |..++..||.+..+|+.+||-.=+.+++.-.+-++.++
T Consensus 20 ~~~~~~-~e~~~L~~~l~e--------E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 20 ELSDRD-DEVKRLREDIAK--------ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343 344555555554 45678999999999999999999999998777666663
No 6
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=39.58 E-value=1.3e+02 Score=25.87 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 014418 345 RQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEY 407 (425)
Q Consensus 345 ~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKlA~a~rkAEekRA~AEAkr~ee~~K~~EkA~k 407 (425)
.++++.+.+|+.++.+|+..+....=+-.|+.+.+...-..+|.....--.+=-..+.++...
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~r 69 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRL 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788899999999999999888888888888888888888877665555544445555443
No 7
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=38.35 E-value=36 Score=22.79 Aligned_cols=22 Identities=36% Similarity=0.755 Sum_probs=13.2
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHH
Q 014418 341 AWESRQK--AKLEAEMRRIEAEVE 362 (425)
Q Consensus 341 AWEN~QK--AKAEA~mrKiE~KLE 362 (425)
.||.+.| |..|.+++-+|.|||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666555 345666666666665
No 8
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.79 E-value=1.9e+02 Score=28.63 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=29.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014418 325 KSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAA 390 (425)
Q Consensus 325 kaK~~~RykREEakI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKlA~a~rkAEekRA~A 390 (425)
..+...+|+.+.++.+. .+.+++..++++..+.++.|. -.+++...|..+...-+++++..
T Consensus 412 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQS----VQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHH
Confidence 34555555555555443 333344555555444444444 33444445555555555555443
No 9
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=28.12 E-value=2e+02 Score=24.21 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 014418 354 MRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQG 405 (425)
Q Consensus 354 mrKiE~KLEkkRA~a~EK~~NKlA~a~rkAEekRA~AEAkr~ee~~K~~EkA 405 (425)
+-+.-.++|.+|. +.|.++.||+.|+ +.|++..+-|.+...|....|
T Consensus 50 Ll~~i~~~ee~R~-~yE~LQDkL~qi~----eAR~ALdaLR~eH~~Klrr~a 96 (98)
T 3f1i_H 50 LLELLNQLDERRL-YYEGLQDKLAQIR----DARGALSALREEHREKLRRAA 96 (98)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 3334445565554 4578888888775 778888888888777766554
No 10
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.57 E-value=2.8e+02 Score=23.38 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 014418 339 IQAWESRQKAKLEAE-----MRRIEAEVEQIRAQA------QAKMVKKISMSRQRSEEKRA 388 (425)
Q Consensus 339 I~AWEN~QKAKAEA~-----mrKiE~KLEkkRA~a------~EK~~NKlA~a~rkAEekRA 388 (425)
-++|+.+..+.|+|. +-.|-.-|+++++.. ++++.++|....++-++++.
T Consensus 28 T~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~ 88 (99)
T 3ni0_A 28 TRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRI 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788887777765 344555666666654 56677777777777766663
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.69 E-value=5.8e+02 Score=32.83 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=42.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014418 325 KSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARK 394 (425)
Q Consensus 325 kaK~~~RykREEakI~AWEN~QKAKAEA~mrKiE~KLEkkRA~a~EK~~NKlA~a~rkAEekRA~AEAkr 394 (425)
...-..||+.=..||..= +.|.++.+.+|..++.+|+++...+ ++++.+|..-+..|+++++.+++.+
T Consensus 1915 l~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea-~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A 1915 LEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQA-NQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555432 3455666677777777777765554 5567777777778888877665443
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.60 E-value=4.7e+02 Score=25.67 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.9
Q ss_pred CCCCCchhHHHHHhh
Q 014418 57 PMPSKWNDAEKWIMN 71 (425)
Q Consensus 57 P~PSKWdDAqKWI~~ 71 (425)
..|.-|||=..+...
T Consensus 138 ~~P~Twdel~~~a~~ 152 (471)
T 3mq9_A 138 NPPKTWEEIPALDKE 152 (471)
T ss_dssp SCCSBGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 468899997776544
Done!