BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014420
         (425 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ZE28|Y120_RICPR Uncharacterized protein RP120 OS=Rickettsia prowazekii (strain
           Madrid E) GN=RP120 PE=4 SV=1
          Length = 354

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 145/299 (48%), Gaps = 22/299 (7%)

Query: 134 MARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHD 193
           + ++  +K  P +++ +GR T  +A  +K+   +N+ +VQI  P +  N FD +I P HD
Sbjct: 57  LLQDIIDKLPPDMIITAGRRTAVLAFYLKK-KFENIKLVQIMQPNLPYNIFDAIILPYHD 115

Query: 194 YYPLTPEGQEKIPQFLRRWITPCEPPD-----------GHVVLTTGALHQIDSAALRSAA 242
           Y  L   G  KI    +   + C+  +             ++   GAL+ I   A  SAA
Sbjct: 116 YRDLLYCGPAKILS--KNIKSHCKVLNYSSRQHDIEKMMKIIPINGALNNI--TAKFSAA 171

Query: 243 SAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSI--RISFSMRT 300
           S   ++  P  K    V +GG      +  D+A  L + LLN + S  +I   ISFS RT
Sbjct: 172 SLELQKHYPHLKQFTAVIIGGNNKRFSFNEDIA-ILFSSLLNKIYSNQAIPFFISFSRRT 230

Query: 301 PEKVSKIIIKELGNNPKVH--IWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKP 358
           P+ V  II      +  ++    D +  NP++  LA A   + TADSIS+ SEA S+GKP
Sbjct: 231 PQIVKSIIKNNTHASTMIYDPSKDTDYNNPYIDMLANAKYIISTADSISMCSEAASSGKP 290

Query: 359 VYVVGAERC-TWKFTDFHKSLRERGVVRPFTGSEDMSDSWSYPPLNDTAEAASRVHEAL 416
           +Y+       + K   F + L E+ + R F  S  M + +SY PLN+  + A  +  AL
Sbjct: 291 LYIFYPPNFNSLKHKIFIEQLVEQKIARIFNESITMLEEYSYKPLNEAKKVAEIIKFAL 349


>sp|Q3ATP4|RPOC_CHLCH DNA-directed RNA polymerase subunit beta' OS=Chlorobium
            chlorochromatii (strain CaD3) GN=rpoC PE=3 SV=1
          Length = 1502

 Score = 37.4 bits (85), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 14/95 (14%)

Query: 302  EKVSKIIIKELGNNPKVHIWDGEEPN-------PHLGHLAWADAFVVTADSISLISEACS 354
            E V  I+I++   N K++I D E          PH  HLA  D  +V  D +   SE  S
Sbjct: 1032 EDVRTIVIQK---NGKINIIDSESGKLLKRYMLPHGAHLACEDGVLVKKDQVLFRSEPNS 1088

Query: 355  TGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTG 389
            T     ++     T KF D  K +  +  V P TG
Sbjct: 1089 T----QIIAELPGTIKFADIEKGVTYKEEVDPQTG 1119


>sp|B0T8I8|ASTD_CAUSK N-succinylglutamate 5-semialdehyde dehydrogenase OS=Caulobacter sp.
           (strain K31) GN=astD PE=3 SV=1
          Length = 484

 Score = 32.7 bits (73), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 26/186 (13%)

Query: 215 PCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVV---NVGGPTGCCRY- 270
           P   P+GH+V    AL   D+   + +      E  PL   L+V      G P G     
Sbjct: 149 PGHLPNGHIVP---ALLAGDTVVFKPS------EETPLAGQLLVEALEEAGVPAGVINLV 199

Query: 271 --GSDLAKQLTAHLLNVLVSCGSIRIS--FSMRTPEKVSKIIIKELGNNPKVHIWDGEEP 326
             G ++ + L    ++ L+  GS      F     ++   I+  ELG N  + +WD  +P
Sbjct: 200 QGGREVGQALIDQEIDGLLFTGSAAAGAFFRRHFADRPDVILALELGGNNPLVVWDAGDP 259

Query: 327 NPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRP 386
              +  L    AF+ T        + CS  + + +V  +       D   +L ER V+ P
Sbjct: 260 EA-VAALIVQSAFITT-------GQRCSCARRL-IVSDDAAGRAVIDAVAALSERLVIGP 310

Query: 387 FTGSED 392
           + G ++
Sbjct: 311 WNGGQE 316


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,516,002
Number of Sequences: 539616
Number of extensions: 7504802
Number of successful extensions: 16012
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16008
Number of HSP's gapped (non-prelim): 4
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)