Query 014420
Match_columns 425
No_of_seqs 177 out of 272
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06258 Mito_fiss_Elm1: Mitoc 100.0 8.8E-79 1.9E-83 607.4 35.9 306 39-417 1-310 (311)
2 COG3660 Predicted nucleoside-d 100.0 2.1E-73 4.5E-78 546.8 30.7 319 29-417 1-327 (329)
3 COG0707 MurG UDP-N-acetylgluco 99.8 1.4E-17 3.1E-22 169.9 15.7 217 132-391 80-308 (357)
4 PRK12446 undecaprenyldiphospho 99.6 7.1E-14 1.5E-18 142.0 26.0 216 135-389 83-307 (352)
5 TIGR00215 lpxB lipid-A-disacch 99.2 4.6E-10 1E-14 115.4 15.9 229 129-388 75-328 (385)
6 cd03785 GT1_MurG MurG is an N- 99.0 3.9E-08 8.4E-13 97.3 22.1 217 135-387 81-304 (350)
7 PRK00726 murG undecaprenyldiph 99.0 9.7E-08 2.1E-12 95.5 23.8 213 135-385 83-302 (357)
8 PRK13609 diacylglycerol glucos 99.0 2.6E-07 5.6E-12 93.5 25.8 218 135-386 96-321 (380)
9 TIGR03492 conserved hypothetic 98.9 4.5E-08 9.8E-13 101.3 16.2 195 134-365 82-324 (396)
10 PLN02605 monogalactosyldiacylg 98.9 2.6E-07 5.6E-12 94.3 20.8 200 136-364 93-310 (382)
11 PRK13608 diacylglycerol glucos 98.8 3E-07 6.4E-12 94.5 19.8 201 134-366 95-304 (391)
12 PRK00025 lpxB lipid-A-disaccha 98.8 1.6E-07 3.4E-12 94.7 16.3 196 134-363 76-287 (380)
13 TIGR01133 murG undecaprenyldip 98.7 1.8E-06 3.9E-11 85.4 21.6 208 135-384 82-298 (348)
14 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 1.1E-06 2.4E-11 90.0 17.1 211 129-363 79-307 (365)
15 PF13528 Glyco_trans_1_3: Glyc 98.5 4.1E-05 8.8E-10 75.3 22.6 111 252-388 190-301 (318)
16 TIGR03590 PseG pseudaminic aci 98.4 3E-05 6.6E-10 76.6 19.2 193 137-365 74-269 (279)
17 TIGR00661 MJ1255 conserved hyp 98.3 2.9E-05 6.3E-10 77.5 17.8 69 317-388 230-298 (321)
18 TIGR00236 wecB UDP-N-acetylglu 98.3 1.3E-05 2.8E-10 80.8 15.1 199 136-363 79-300 (365)
19 cd03786 GT1_UDP-GlcNAc_2-Epime 98.3 4.4E-05 9.4E-10 76.1 17.1 206 134-364 79-304 (363)
20 PF04101 Glyco_tran_28_C: Glyc 98.2 5.1E-07 1.1E-11 81.5 1.5 124 257-389 1-126 (167)
21 cd03784 GT1_Gtf_like This fami 97.9 0.0063 1.4E-07 61.9 25.0 65 316-388 288-353 (401)
22 cd03811 GT1_WabH_like This fam 97.8 0.0054 1.2E-07 58.0 21.8 200 138-365 76-296 (353)
23 cd03801 GT1_YqgM_like This fam 97.8 0.0017 3.7E-08 61.4 17.6 205 137-365 79-308 (374)
24 cd03807 GT1_WbnK_like This fam 97.7 0.0047 1E-07 59.0 18.7 201 137-364 74-300 (365)
25 cd04951 GT1_WbdM_like This fam 97.7 0.0031 6.7E-08 61.5 17.7 112 245-364 178-294 (360)
26 cd03819 GT1_WavL_like This fam 97.7 0.0018 3.9E-08 63.3 15.8 203 137-365 72-297 (355)
27 PRK05749 3-deoxy-D-manno-octul 97.6 0.0084 1.8E-07 61.9 20.9 57 328-388 312-373 (425)
28 PRK10307 putative glycosyl tra 97.6 0.0039 8.4E-08 63.8 18.3 198 142-365 105-340 (412)
29 cd03808 GT1_cap1E_like This fa 97.5 0.0041 8.8E-08 59.2 16.2 199 136-365 73-296 (359)
30 cd03794 GT1_wbuB_like This fam 97.5 0.0022 4.8E-08 61.7 14.2 201 140-366 96-333 (394)
31 cd03822 GT1_ecORF704_like This 97.5 0.003 6.5E-08 61.2 14.7 108 252-365 182-302 (366)
32 cd04962 GT1_like_5 This family 97.5 0.0076 1.6E-07 59.6 17.6 203 136-365 77-303 (371)
33 COG4671 Predicted glycosyl tra 97.5 0.0014 3.1E-08 67.2 12.2 154 254-419 219-392 (400)
34 cd05844 GT1_like_7 Glycosyltra 97.4 0.0041 8.9E-08 61.4 15.3 195 138-365 77-303 (367)
35 cd03812 GT1_CapH_like This fam 97.4 0.02 4.4E-07 56.0 18.9 202 138-366 75-300 (358)
36 COG0381 WecB UDP-N-acetylgluco 97.3 0.047 1E-06 56.8 21.4 216 128-365 77-309 (383)
37 cd03820 GT1_amsD_like This fam 97.2 0.039 8.6E-07 52.1 18.7 190 137-365 77-285 (348)
38 cd03799 GT1_amsK_like This is 97.2 0.025 5.5E-07 55.0 17.7 197 139-365 75-294 (355)
39 PF04007 DUF354: Protein of un 97.2 0.069 1.5E-06 54.8 21.3 206 139-388 79-295 (335)
40 PF02350 Epimerase_2: UDP-N-ac 97.1 0.0014 3E-08 67.0 8.3 199 135-362 59-283 (346)
41 TIGR02149 glgA_Coryne glycogen 97.1 0.03 6.4E-07 56.1 17.2 201 141-365 81-313 (388)
42 cd03817 GT1_UGDG_like This fam 97.1 0.037 7.9E-07 53.2 17.0 112 248-365 195-311 (374)
43 cd04955 GT1_like_6 This family 97.1 0.026 5.7E-07 55.2 16.2 196 140-365 83-301 (363)
44 cd03800 GT1_Sucrose_synthase T 97.1 0.034 7.3E-07 55.3 17.1 198 143-364 101-334 (398)
45 cd03798 GT1_wlbH_like This fam 97.0 0.041 8.9E-07 52.4 16.5 202 137-364 85-310 (377)
46 PRK14089 ipid-A-disaccharide s 97.0 0.015 3.2E-07 59.9 13.7 208 118-379 51-275 (347)
47 cd03823 GT1_ExpE7_like This fa 96.9 0.051 1.1E-06 52.2 16.4 196 136-365 89-296 (359)
48 cd03796 GT1_PIG-A_like This fa 96.9 0.046 1E-06 55.8 16.9 197 137-365 82-302 (398)
49 cd03818 GT1_ExpC_like This fam 96.9 0.18 3.8E-06 51.4 20.8 50 316-365 281-333 (396)
50 PLN02871 UDP-sulfoquinovose:DA 96.8 0.022 4.7E-07 59.9 14.1 69 290-363 291-362 (465)
51 TIGR01426 MGT glycosyltransfer 96.8 0.046 1E-06 55.8 16.1 87 289-388 254-340 (392)
52 cd03804 GT1_wbaZ_like This fam 96.8 0.059 1.3E-06 53.4 16.1 70 290-365 222-293 (351)
53 PRK09922 UDP-D-galactose:(gluc 96.7 0.12 2.7E-06 51.9 18.4 196 137-363 78-288 (359)
54 cd03792 GT1_Trehalose_phosphor 96.7 0.085 1.8E-06 53.1 16.6 115 246-365 181-306 (372)
55 cd03821 GT1_Bme6_like This fam 96.6 0.16 3.4E-06 48.7 17.4 113 248-365 196-314 (375)
56 cd03795 GT1_like_4 This family 96.6 0.12 2.7E-06 50.2 16.8 105 253-365 189-298 (357)
57 PHA03392 egt ecdysteroid UDP-g 96.5 0.093 2E-06 56.6 16.7 57 328-388 355-413 (507)
58 PRK15427 colanic acid biosynth 96.5 0.23 5E-06 51.6 19.1 197 139-365 114-337 (406)
59 cd03814 GT1_like_2 This family 96.4 0.065 1.4E-06 51.7 13.3 51 316-366 247-300 (364)
60 TIGR03449 mycothiol_MshA UDP-N 96.3 0.16 3.5E-06 51.4 16.1 199 142-365 100-335 (405)
61 PRK15484 lipopolysaccharide 1, 96.3 0.4 8.7E-06 49.1 18.9 195 142-364 98-309 (380)
62 COG3980 spsG Spore coat polysa 96.2 0.16 3.5E-06 51.1 14.8 132 232-387 141-274 (318)
63 cd03813 GT1_like_3 This family 96.0 0.14 3.1E-06 54.0 14.3 192 141-364 171-402 (475)
64 PRK10017 colanic acid biosynth 95.8 1 2.3E-05 47.7 19.8 213 143-379 117-366 (426)
65 cd03805 GT1_ALG2_like This fam 95.8 0.24 5.3E-06 49.5 14.3 51 316-366 280-333 (392)
66 cd01635 Glycosyltransferase_GT 95.7 0.43 9.3E-06 42.7 14.2 77 290-367 136-216 (229)
67 cd03816 GT1_ALG1_like This fam 95.7 0.56 1.2E-05 48.7 16.9 72 291-364 271-349 (415)
68 TIGR02095 glgA glycogen/starch 95.7 0.19 4.2E-06 52.8 13.6 116 242-364 276-397 (473)
69 PRK01021 lpxB lipid-A-disaccha 95.5 0.41 9E-06 52.8 15.8 208 118-363 283-514 (608)
70 PRK15179 Vi polysaccharide bio 95.5 1.3 2.8E-05 49.8 20.0 85 278-365 535-624 (694)
71 cd04949 GT1_gtfA_like This fam 95.5 0.61 1.3E-05 46.5 16.0 104 254-365 203-311 (372)
72 PF00534 Glycos_transf_1: Glyc 95.3 0.23 4.9E-06 44.0 11.0 115 244-364 4-124 (172)
73 TIGR03088 stp2 sugar transfera 95.3 1.5 3.3E-05 43.8 18.0 104 253-364 192-304 (374)
74 cd03806 GT1_ALG11_like This fa 95.3 0.28 6E-06 51.1 13.1 75 290-364 274-356 (419)
75 cd03791 GT1_Glycogen_synthase_ 95.0 1.4 3.1E-05 45.9 17.6 117 242-365 281-403 (476)
76 PF02684 LpxB: Lipid-A-disacch 95.0 1.1 2.3E-05 46.8 16.2 225 118-385 55-306 (373)
77 cd03809 GT1_mtfB_like This fam 94.8 0.17 3.6E-06 49.0 9.3 108 252-365 192-305 (365)
78 PRK00654 glgA glycogen synthas 94.8 0.71 1.5E-05 48.7 14.7 114 242-364 268-388 (466)
79 COG0859 RfaF ADP-heptose:LPS h 94.6 0.37 7.9E-06 48.9 11.5 105 254-366 175-280 (334)
80 cd03802 GT1_AviGT4_like This f 94.5 3.9 8.5E-05 39.5 18.1 78 289-366 197-278 (335)
81 PRK15490 Vi polysaccharide bio 94.5 4.8 0.00011 44.4 20.3 73 290-365 430-505 (578)
82 TIGR02400 trehalose_OtsA alpha 93.9 1.4 3.1E-05 46.9 14.6 42 326-367 346-394 (456)
83 TIGR02472 sucr_P_syn_N sucrose 93.9 3.8 8.2E-05 42.8 17.6 40 326-365 327-373 (439)
84 cd03825 GT1_wcfI_like This fam 93.7 0.97 2.1E-05 44.1 12.1 49 317-365 245-297 (365)
85 PRK10964 ADP-heptose:LPS hepto 93.5 1.4 3E-05 44.0 13.1 105 253-367 177-283 (322)
86 COG0763 LpxB Lipid A disacchar 93.5 1.7 3.8E-05 45.4 13.9 208 139-385 81-310 (381)
87 COG1819 Glycosyl transferases, 93.2 1.3 2.9E-05 46.4 12.9 57 326-386 291-347 (406)
88 TIGR00421 ubiX_pad polyprenyl 93.0 2.2 4.8E-05 40.0 12.8 77 334-416 74-171 (181)
89 cd03789 GT1_LPS_heptosyltransf 92.9 0.91 2E-05 44.2 10.5 106 254-366 121-227 (279)
90 PF01075 Glyco_transf_9: Glyco 92.8 0.41 8.9E-06 45.5 7.7 201 138-365 7-211 (247)
91 PRK14099 glycogen synthase; Pr 92.7 6.7 0.00015 42.0 17.5 113 243-363 281-400 (485)
92 COG1519 KdtA 3-deoxy-D-manno-o 92.6 7.9 0.00017 41.1 17.3 219 137-389 117-372 (419)
93 TIGR02201 heptsyl_trn_III lipo 92.4 2.8 6E-05 42.2 13.4 107 253-365 180-288 (344)
94 PHA01633 putative glycosyl tra 92.1 1.8 3.9E-05 44.5 11.8 39 327-365 215-256 (335)
95 TIGR02918 accessory Sec system 91.7 7.6 0.00017 41.9 16.6 103 254-365 318-425 (500)
96 TIGR02193 heptsyl_trn_I lipopo 91.1 3.1 6.7E-05 41.3 12.0 104 252-365 177-282 (319)
97 TIGR02398 gluc_glyc_Psyn gluco 91.0 3.5 7.5E-05 44.6 13.1 32 326-357 372-406 (487)
98 TIGR03609 S_layer_CsaB polysac 90.9 6.6 0.00014 38.7 14.1 116 253-378 171-288 (298)
99 PRK05579 bifunctional phosphop 90.0 10 0.00022 39.9 15.2 156 252-418 4-183 (399)
100 PLN02316 synthase/transferase 89.6 6 0.00013 46.5 14.2 198 142-365 708-952 (1036)
101 TIGR02195 heptsyl_trn_II lipop 89.2 6.9 0.00015 39.1 12.9 105 253-365 173-279 (334)
102 PLN03063 alpha,alpha-trehalose 88.8 4 8.6E-05 46.7 11.9 31 328-358 368-401 (797)
103 PF13692 Glyco_trans_1_4: Glyc 88.7 1.5 3.2E-05 37.2 6.6 76 278-363 20-102 (135)
104 PRK10916 ADP-heptose:LPS hepto 88.7 7.4 0.00016 39.3 12.7 106 253-364 179-288 (348)
105 PLN02275 transferase, transfer 88.3 5.4 0.00012 40.6 11.5 71 291-363 263-340 (371)
106 PRK10422 lipopolysaccharide co 88.3 11 0.00024 38.2 13.7 107 253-365 182-290 (352)
107 PLN02501 digalactosyldiacylgly 87.9 14 0.0003 42.1 14.9 38 329-366 612-652 (794)
108 TIGR02113 coaC_strep phosphopa 87.8 10 0.00022 35.4 12.1 148 256-415 2-176 (177)
109 cd03788 GT1_TPS Trehalose-6-Ph 87.7 4.2 9.1E-05 43.2 10.6 41 318-358 342-386 (460)
110 PRK07313 phosphopantothenoylcy 87.4 12 0.00026 35.2 12.3 151 256-418 3-180 (182)
111 PF00201 UDPGT: UDP-glucoronos 87.3 3.5 7.6E-05 43.5 9.7 95 290-388 277-390 (500)
112 PLN02496 probable phosphopanto 87.2 23 0.0005 34.3 14.3 153 253-418 18-199 (209)
113 COG1817 Uncharacterized protei 87.2 24 0.00051 36.5 14.9 206 138-387 79-298 (346)
114 PRK05920 aromatic acid decarbo 87.2 18 0.00038 34.9 13.5 80 335-420 93-190 (204)
115 PRK13982 bifunctional SbtC-lik 86.9 31 0.00067 37.4 16.5 156 252-417 68-247 (475)
116 TIGR03087 stp1 sugar transfera 86.2 9.7 0.00021 38.8 12.0 99 255-363 224-329 (397)
117 TIGR00521 coaBC_dfp phosphopan 85.4 24 0.00053 37.1 14.6 155 254-418 3-179 (390)
118 PLN02846 digalactosyldiacylgly 84.9 30 0.00064 37.3 15.2 84 278-366 246-334 (462)
119 PRK14098 glycogen synthase; Pr 84.5 15 0.00033 39.3 13.0 115 243-364 293-413 (489)
120 TIGR02470 sucr_synth sucrose s 83.9 51 0.0011 38.0 17.2 27 142-168 384-410 (784)
121 TIGR02852 spore_dpaB dipicolin 82.8 42 0.0009 31.9 13.6 149 256-418 2-179 (187)
122 PF13844 Glyco_transf_41: Glyc 81.9 5.9 0.00013 42.7 8.5 112 253-373 282-401 (468)
123 PLN02207 UDP-glycosyltransfera 81.6 39 0.00084 36.4 14.6 82 328-417 341-425 (468)
124 PLN02562 UDP-glycosyltransfera 81.2 59 0.0013 34.7 15.7 56 328-387 337-395 (448)
125 PF05159 Capsule_synth: Capsul 78.8 11 0.00025 36.6 8.8 82 280-366 144-228 (269)
126 PRK06029 3-octaprenyl-4-hydrox 78.4 43 0.00093 31.7 12.2 79 335-417 78-175 (185)
127 TIGR00730 conserved hypothetic 78.0 5.1 0.00011 37.5 5.8 58 329-386 90-156 (178)
128 cd04946 GT1_AmsK_like This fam 77.9 21 0.00047 36.8 11.0 105 254-364 229-342 (407)
129 KOG3349 Predicted glycosyltran 77.9 9.3 0.0002 35.5 7.2 65 318-385 65-130 (170)
130 PRK08305 spoVFB dipicolinate s 77.5 33 0.00072 32.8 11.2 125 253-389 4-157 (196)
131 PLN02554 UDP-glycosyltransfera 76.5 1.1E+02 0.0023 33.0 16.0 57 328-387 351-409 (481)
132 PF03641 Lysine_decarbox: Poss 76.2 8 0.00017 34.2 6.3 57 330-386 48-114 (133)
133 PLN02410 UDP-glucoronosyl/UDP- 74.9 62 0.0013 34.6 13.6 46 327-373 332-379 (451)
134 PLN02939 transferase, transfer 71.8 74 0.0016 37.5 14.0 118 242-365 763-889 (977)
135 PF02441 Flavoprotein: Flavopr 70.2 35 0.00077 29.6 8.8 98 256-365 2-119 (129)
136 cd04950 GT1_like_1 Glycosyltra 70.1 12 0.00025 38.2 6.6 149 182-364 152-310 (373)
137 PLN03064 alpha,alpha-trehalose 70.0 62 0.0013 38.0 13.0 32 326-357 450-484 (934)
138 PLN02448 UDP-glycosyltransfera 69.5 11 0.00024 40.0 6.5 80 328-417 332-414 (459)
139 PRK14501 putative bifunctional 69.0 27 0.00058 39.4 9.7 33 326-358 352-387 (726)
140 COG0438 RfaG Glycosyltransfera 67.7 1E+02 0.0022 28.3 11.9 74 291-365 232-309 (381)
141 PLN02863 UDP-glucoronosyl/UDP- 67.3 1.8E+02 0.004 31.3 15.2 38 328-366 352-391 (477)
142 PF08660 Alg14: Oligosaccharid 66.0 6.2 0.00013 36.6 3.3 54 136-191 85-154 (170)
143 PLN02167 UDP-glycosyltransfera 65.9 1.6E+02 0.0035 31.5 14.5 57 328-387 349-407 (475)
144 PLN00164 glucosyltransferase; 63.4 1.7E+02 0.0036 31.6 14.0 79 328-416 348-429 (480)
145 PRK10125 putative glycosyl tra 63.1 10 0.00022 39.5 4.7 39 328-366 299-340 (405)
146 cd01078 NAD_bind_H4MPT_DH NADP 62.8 1.3E+02 0.0027 27.7 11.9 97 253-363 26-127 (194)
147 KOG3191 Predicted N6-DNA-methy 62.8 95 0.0021 30.0 10.5 140 120-310 28-183 (209)
148 PLN02152 indole-3-acetate beta 62.3 16 0.00035 39.1 6.0 80 328-418 336-417 (455)
149 TIGR02468 sucrsPsyn_pln sucros 62.0 57 0.0012 38.7 10.8 32 143-176 310-341 (1050)
150 PLN02555 limonoid glucosyltran 61.9 1.4E+02 0.003 32.4 13.0 79 328-416 346-427 (480)
151 PHA01630 putative group 1 glyc 61.0 11 0.00025 38.2 4.4 39 327-365 201-242 (331)
152 COG3914 Spy Predicted O-linked 60.3 2.2E+02 0.0048 31.8 14.1 196 140-366 332-541 (620)
153 PLN02949 transferase, transfer 59.9 1.1E+02 0.0023 32.8 11.8 75 290-364 304-386 (463)
154 cd03146 GAT1_Peptidase_E Type 59.7 68 0.0015 30.4 9.3 103 258-363 2-121 (212)
155 PLN03007 UDP-glucosyltransfera 59.3 26 0.00056 37.6 7.0 57 328-385 354-412 (482)
156 PLN02670 transferase, transfer 59.2 66 0.0014 34.7 10.0 78 328-416 348-427 (472)
157 PLN00142 sucrose synthase 58.5 2.4E+02 0.0052 32.8 14.7 33 142-176 407-439 (815)
158 PF00731 AIRC: AIR carboxylase 58.4 43 0.00093 30.8 7.3 87 255-368 1-90 (150)
159 TIGR00732 dprA DNA protecting 57.9 13 0.00027 36.0 4.0 55 333-389 153-212 (220)
160 PLN02210 UDP-glucosyl transfer 57.9 1.4E+02 0.0031 31.8 12.3 79 327-416 332-413 (456)
161 PF04464 Glyphos_transf: CDP-G 56.7 22 0.00047 36.1 5.6 47 315-365 251-297 (369)
162 KOG1192 UDP-glucuronosyl and U 53.3 2.2E+02 0.0048 29.8 12.7 151 220-388 244-403 (496)
163 PF00106 adh_short: short chai 52.6 27 0.00059 30.4 4.9 57 256-322 1-58 (167)
164 cd03129 GAT1_Peptidase_E_like 52.6 79 0.0017 29.7 8.4 64 289-352 29-97 (210)
165 PLN02534 UDP-glycosyltransfera 52.3 32 0.0007 37.2 6.3 84 328-417 353-443 (491)
166 TIGR01370 cysRS possible cyste 52.0 2.4E+02 0.0053 28.9 12.3 40 349-388 257-303 (315)
167 PRK05441 murQ N-acetylmuramic 51.9 1.1E+02 0.0024 30.9 9.7 117 219-343 61-183 (299)
168 PF03435 Saccharop_dh: Sacchar 51.7 82 0.0018 32.3 9.0 101 285-387 16-120 (386)
169 PLN02992 coniferyl-alcohol glu 51.3 3.2E+02 0.0068 29.7 13.6 57 328-388 347-406 (481)
170 cd03145 GAT1_cyanophycinase Ty 51.1 1.8E+02 0.004 27.7 10.7 89 258-351 2-99 (217)
171 TIGR02699 archaeo_AfpA archaeo 50.8 1.4E+02 0.0031 28.0 9.6 58 332-389 75-166 (174)
172 PRK12570 N-acetylmuramic acid- 50.0 1.6E+02 0.0034 29.8 10.5 115 219-341 57-177 (296)
173 PRK10117 trehalose-6-phosphate 48.7 74 0.0016 34.5 8.3 96 259-357 257-376 (474)
174 PRK06718 precorrin-2 dehydroge 48.0 87 0.0019 29.7 7.9 35 330-364 65-102 (202)
175 TIGR01829 AcAcCoA_reduct aceto 46.8 1.7E+02 0.0036 27.0 9.5 78 256-344 1-87 (242)
176 PRK05800 cobU adenosylcobinami 46.6 2.4E+02 0.0051 25.9 10.9 113 291-413 29-144 (170)
177 cd05007 SIS_Etherase N-acetylm 45.7 1.6E+02 0.0034 29.0 9.6 117 219-343 48-170 (257)
178 PLN02173 UDP-glucosyl transfer 44.3 67 0.0014 34.4 7.2 44 328-372 326-371 (449)
179 COG3260 Ni,Fe-hydrogenase III 44.2 84 0.0018 28.8 6.6 81 221-313 50-132 (148)
180 TIGR02069 cyanophycinase cyano 43.8 2.6E+02 0.0057 27.4 10.8 89 259-353 2-100 (250)
181 PRK12937 short chain dehydroge 43.4 2.3E+02 0.0049 26.2 9.9 79 255-344 5-92 (245)
182 PF03016 Exostosin: Exostosin 43.2 42 0.00091 32.6 5.1 35 328-362 229-267 (302)
183 TIGR01012 Sa_S2_E_A ribosomal 43.1 3.1E+02 0.0067 26.3 10.9 105 259-364 28-139 (196)
184 cd06308 PBP1_sensor_kinase_lik 43.0 2.9E+02 0.0062 25.9 10.8 44 340-383 99-154 (270)
185 PF13460 NAD_binding_10: NADH( 41.4 1.3E+02 0.0028 26.7 7.6 68 285-362 18-95 (183)
186 PRK12935 acetoacetyl-CoA reduc 41.3 2.3E+02 0.0051 26.2 9.7 79 255-345 6-94 (247)
187 PRK06935 2-deoxy-D-gluconate 3 40.9 1.3E+02 0.0028 28.4 8.0 45 254-308 14-58 (258)
188 TIGR00725 conserved hypothetic 39.9 82 0.0018 28.8 6.1 43 328-370 84-129 (159)
189 PF04763 DUF562: Protein of un 39.3 3.1E+02 0.0066 25.2 11.4 108 268-380 30-144 (146)
190 COG0452 Dfp Phosphopantothenoy 39.3 4.9E+02 0.011 27.5 13.1 156 253-419 3-179 (392)
191 PF13660 DUF4147: Domain of un 39.1 2E+02 0.0044 28.4 9.0 125 140-314 38-169 (238)
192 PRK03094 hypothetical protein; 39.1 18 0.00039 29.9 1.5 54 307-367 12-66 (80)
193 COG1611 Predicted Rossmann fol 38.0 3.7E+02 0.008 25.8 12.6 81 330-417 105-197 (205)
194 cd06324 PBP1_ABC_sugar_binding 38.0 3E+02 0.0065 26.7 10.3 37 277-313 17-54 (305)
195 COG3233 Predicted deacetylase 37.6 1.4E+02 0.003 29.4 7.5 79 346-424 24-113 (233)
196 PRK12745 3-ketoacyl-(acyl-carr 37.3 2.7E+02 0.0058 25.9 9.5 77 256-344 3-89 (256)
197 cd01539 PBP1_GGBP Periplasmic 37.1 3.8E+02 0.0081 26.1 10.8 39 275-313 14-55 (303)
198 PRK03972 ribosomal biogenesis 37.0 80 0.0017 30.7 5.7 52 292-344 2-59 (208)
199 PF10093 DUF2331: Uncharacteri 36.6 5.4E+02 0.012 27.2 12.8 167 242-420 168-362 (374)
200 PF07429 Glyco_transf_56: 4-al 36.5 5.3E+02 0.012 27.1 12.2 126 254-390 183-316 (360)
201 TIGR03713 acc_sec_asp1 accesso 35.6 2.5E+02 0.0054 30.7 9.9 44 317-360 410-455 (519)
202 COG1454 EutG Alcohol dehydroge 35.4 80 0.0017 33.3 5.9 30 135-164 78-108 (377)
203 PLN03004 UDP-glycosyltransfera 35.3 98 0.0021 33.2 6.7 78 328-417 343-423 (451)
204 PRK10736 hypothetical protein; 35.0 38 0.00082 35.6 3.5 57 333-391 216-277 (374)
205 PRK08642 fabG 3-ketoacyl-(acyl 34.6 2.4E+02 0.0051 26.2 8.6 75 255-343 5-89 (253)
206 PF02481 DNA_processg_A: DNA r 34.1 77 0.0017 30.4 5.2 54 332-387 152-210 (212)
207 PRK06172 short chain dehydroge 33.9 2.1E+02 0.0045 26.8 8.1 77 255-344 7-93 (253)
208 PRK10355 xylF D-xylose transpo 33.8 4.4E+02 0.0095 26.3 10.8 86 253-344 24-113 (330)
209 PF10686 DUF2493: Protein of u 33.7 1.1E+02 0.0025 24.3 5.3 42 219-266 2-44 (71)
210 PRK10886 DnaA initiator-associ 33.5 1.6E+02 0.0035 27.9 7.2 74 278-352 99-174 (196)
211 PRK10017 colanic acid biosynth 33.2 3.4E+02 0.0073 28.9 10.3 37 328-364 110-156 (426)
212 PRK10116 universal stress prot 33.2 92 0.002 26.5 5.1 32 335-366 102-141 (142)
213 PRK05557 fabG 3-ketoacyl-(acyl 32.9 3.8E+02 0.0083 24.4 9.7 78 255-344 5-92 (248)
214 PF09152 DUF1937: Domain of un 32.0 70 0.0015 28.3 4.1 33 330-362 74-114 (116)
215 PRK12481 2-deoxy-D-gluconate 3 31.7 3.1E+02 0.0068 25.8 9.0 76 255-344 8-92 (251)
216 PF05014 Nuc_deoxyrib_tr: Nucl 31.6 88 0.0019 26.4 4.6 38 330-367 56-100 (113)
217 PRK09072 short chain dehydroge 31.6 4E+02 0.0087 25.1 9.7 78 255-345 5-90 (263)
218 PRK08085 gluconate 5-dehydroge 31.2 3.2E+02 0.0069 25.6 8.9 19 254-275 8-26 (254)
219 COG2379 GckA Putative glycerat 31.2 3.6E+02 0.0078 28.9 9.7 94 140-271 35-130 (422)
220 PF04230 PS_pyruv_trans: Polys 31.1 4E+02 0.0087 24.3 9.4 39 325-365 247-285 (286)
221 PRK10586 putative oxidoreducta 30.9 2.5E+02 0.0054 29.1 8.7 101 260-365 8-119 (362)
222 PRK12743 oxidoreductase; Provi 30.7 4.4E+02 0.0095 24.8 9.8 77 256-344 3-89 (256)
223 cd03793 GT1_Glycogen_synthase_ 30.6 79 0.0017 35.3 5.1 48 329-380 468-518 (590)
224 PLN02208 glycosyltransferase f 30.4 2.2E+02 0.0048 30.3 8.4 95 290-388 252-379 (442)
225 PRK12938 acetyacetyl-CoA reduc 30.3 4.4E+02 0.0096 24.3 9.8 80 255-345 3-91 (246)
226 PRK14818 NADH dehydrogenase su 30.2 1.1E+02 0.0023 29.0 5.2 101 173-311 49-151 (173)
227 PF04413 Glycos_transf_N: 3-De 29.9 2.6E+02 0.0057 26.1 7.9 86 274-364 33-126 (186)
228 PLN02764 glycosyltransferase f 29.9 1.9E+02 0.0042 31.1 7.8 56 328-387 326-384 (453)
229 COG0746 MobA Molybdopterin-gua 29.4 1.7E+02 0.0038 27.6 6.7 81 256-345 6-97 (192)
230 TIGR01832 kduD 2-deoxy-D-gluco 29.4 4.2E+02 0.0091 24.5 9.4 79 254-344 4-89 (248)
231 PRK07478 short chain dehydroge 29.3 3.5E+02 0.0077 25.2 8.9 16 402-417 217-232 (254)
232 PRK12429 3-hydroxybutyrate deh 29.0 2.4E+02 0.0052 26.2 7.6 11 256-266 5-15 (258)
233 TIGR03837 efp_adjacent_2 conse 28.6 3.5E+02 0.0076 28.6 9.2 146 268-419 188-359 (371)
234 PRK06114 short chain dehydroge 28.4 4.9E+02 0.011 24.4 9.7 78 255-344 8-95 (254)
235 PRK07904 short chain dehydroge 28.4 3.5E+02 0.0077 25.7 8.8 40 252-302 5-45 (253)
236 PF03771 SPDY: Domain of unkno 28.3 78 0.0017 24.6 3.4 25 290-314 33-57 (63)
237 PRK08416 7-alpha-hydroxysteroi 28.2 4.2E+02 0.0091 25.0 9.3 43 254-307 7-49 (260)
238 PRK08936 glucose-1-dehydrogena 27.9 5.1E+02 0.011 24.3 9.8 38 254-302 6-43 (261)
239 COG4565 CitB Response regulato 27.8 6E+02 0.013 25.0 11.0 78 284-364 18-104 (224)
240 PRK08643 acetoin reductase; Va 27.5 3.1E+02 0.0067 25.6 8.1 76 256-344 3-88 (256)
241 PRK08267 short chain dehydroge 27.5 3.3E+02 0.0072 25.5 8.4 75 257-345 3-87 (260)
242 cd01425 RPS2 Ribosomal protein 27.2 4.7E+02 0.01 24.5 9.2 105 259-364 22-158 (193)
243 PRK06924 short chain dehydroge 27.1 2.6E+02 0.0056 26.0 7.5 32 257-299 3-34 (251)
244 COG0416 PlsX Fatty acid/phosph 26.7 7.5E+02 0.016 25.8 11.1 103 134-271 87-194 (338)
245 PF06925 MGDG_synth: Monogalac 26.6 1.6E+02 0.0034 26.6 5.7 59 136-194 82-148 (169)
246 PF09664 DUF2399: Protein of u 26.5 3.7E+02 0.0081 24.5 8.1 74 339-423 21-97 (152)
247 PRK12828 short chain dehydroge 26.5 4.8E+02 0.011 23.6 9.1 14 404-417 206-219 (239)
248 PRK06194 hypothetical protein; 26.4 3.7E+02 0.008 25.7 8.6 79 255-345 6-93 (287)
249 PTZ00254 40S ribosomal protein 26.3 4.7E+02 0.01 26.1 9.2 105 259-364 37-149 (249)
250 PRK07533 enoyl-(acyl carrier p 26.2 4E+02 0.0086 25.3 8.7 34 254-295 9-42 (258)
251 PRK06128 oxidoreductase; Provi 26.1 3.9E+02 0.0086 26.0 8.8 36 255-300 55-90 (300)
252 cd06281 PBP1_LacI_like_5 Ligan 26.0 5.3E+02 0.012 24.0 9.5 15 369-383 133-147 (269)
253 PLN03209 translocon at the inn 26.0 5.9E+02 0.013 28.5 10.8 81 252-345 77-169 (576)
254 PRK08628 short chain dehydroge 25.9 3.4E+02 0.0073 25.4 8.1 17 256-275 8-24 (258)
255 PF04016 DUF364: Domain of unk 25.8 86 0.0019 28.3 3.8 38 328-365 55-97 (147)
256 PRK14813 NADH dehydrogenase su 25.7 1.3E+02 0.0028 28.8 5.0 100 174-310 47-148 (189)
257 PRK14982 acyl-ACP reductase; P 25.6 3.5E+02 0.0075 28.1 8.6 116 225-364 127-245 (340)
258 PRK12939 short chain dehydroge 25.6 4.4E+02 0.0096 24.2 8.7 77 255-344 7-93 (250)
259 PLN00414 glycosyltransferase f 25.5 73 0.0016 34.0 3.7 57 327-387 320-379 (446)
260 PF02880 PGM_PMM_III: Phosphog 25.3 2.7E+02 0.0058 23.5 6.6 80 338-423 22-102 (113)
261 TIGR01162 purE phosphoribosyla 25.1 3.8E+02 0.0082 24.9 7.8 70 290-377 28-98 (156)
262 PF03698 UPF0180: Uncharacteri 25.0 32 0.0007 28.4 0.7 28 333-360 33-61 (80)
263 cd01410 SIRT7 SIRT7: Eukaryoti 24.9 2.2E+02 0.0047 27.1 6.5 51 316-367 132-193 (206)
264 KOG0025 Zn2+-binding dehydroge 24.8 4.2E+02 0.0091 27.5 8.6 35 32-70 163-198 (354)
265 TIGR01470 cysG_Nterm siroheme 24.5 5.7E+02 0.012 24.2 9.3 76 280-364 23-102 (205)
266 PRK10427 putative PTS system f 24.5 69 0.0015 28.0 2.8 53 326-379 47-100 (114)
267 cd07080 ALDH_Acyl-CoA-Red_LuxC 24.2 2.8E+02 0.0061 29.2 7.8 69 288-356 138-216 (422)
268 cd01542 PBP1_TreR_like Ligand- 23.9 5.7E+02 0.012 23.5 9.4 44 340-383 93-146 (259)
269 PRK06181 short chain dehydroge 23.9 4.5E+02 0.0097 24.6 8.5 17 402-418 209-225 (263)
270 cd00133 PTS_IIB PTS_IIB: subun 23.9 2E+02 0.0042 21.7 5.0 37 331-372 42-78 (84)
271 PRK07454 short chain dehydroge 23.6 5.8E+02 0.013 23.5 9.3 17 402-418 207-223 (241)
272 PRK12746 short chain dehydroge 23.4 5.5E+02 0.012 23.8 9.0 35 255-299 6-40 (254)
273 PRK05282 (alpha)-aspartyl dipe 23.3 5.3E+02 0.011 25.2 8.9 32 330-361 74-118 (233)
274 PRK10569 NAD(P)H-dependent FMN 22.9 5.3E+02 0.011 24.1 8.6 35 351-386 94-133 (191)
275 PRK09932 glycerate kinase II; 22.6 2.8E+02 0.0061 29.3 7.3 56 328-388 277-343 (381)
276 PRK09135 pteridine reductase; 22.6 6E+02 0.013 23.2 9.2 78 255-344 6-94 (249)
277 cd06273 PBP1_GntR_like_1 This 22.5 6.2E+02 0.013 23.4 9.6 15 369-383 134-148 (268)
278 PF12965 DUF3854: Domain of un 22.4 3.2E+02 0.0069 24.3 6.7 82 253-334 27-123 (130)
279 cd00408 DHDPS-like Dihydrodipi 22.1 7.3E+02 0.016 24.1 13.7 56 255-310 31-87 (281)
280 cd06298 PBP1_CcpA_like Ligand- 22.1 6.3E+02 0.014 23.3 9.7 15 369-383 134-148 (268)
281 PF14062 DUF4253: Domain of un 21.7 2.5E+02 0.0055 24.2 5.7 55 223-283 17-77 (111)
282 PRK06079 enoyl-(acyl carrier p 21.6 5.1E+02 0.011 24.4 8.5 10 255-264 7-16 (252)
283 cd08187 BDH Butanol dehydrogen 21.5 6E+02 0.013 26.2 9.5 77 289-365 28-137 (382)
284 PF08616 SPA: Stabilization of 21.5 1.5E+02 0.0032 25.7 4.2 35 346-380 15-49 (113)
285 PRK07775 short chain dehydroge 21.5 3.8E+02 0.0082 25.6 7.6 14 253-266 8-21 (274)
286 PRK08217 fabG 3-ketoacyl-(acyl 21.3 5.9E+02 0.013 23.3 8.7 12 255-266 5-16 (253)
287 COG1576 Uncharacterized conser 21.3 3.4E+02 0.0074 25.2 6.7 47 220-274 67-113 (155)
288 cd06289 PBP1_MalI_like Ligand- 21.3 6.5E+02 0.014 23.1 10.3 44 340-383 96-148 (268)
289 PRK08339 short chain dehydroge 21.2 4.6E+02 0.0099 25.0 8.1 35 254-299 7-41 (263)
290 PRK07985 oxidoreductase; Provi 21.2 6.1E+02 0.013 24.7 9.1 32 255-296 49-80 (294)
291 PRK07424 bifunctional sterol d 21.1 3.1E+02 0.0068 29.0 7.3 78 254-344 177-254 (406)
292 PRK08226 short chain dehydroge 21.0 6.6E+02 0.014 23.5 9.0 12 255-266 6-17 (263)
293 PRK12744 short chain dehydroge 21.0 5.7E+02 0.012 23.9 8.6 17 402-418 223-239 (257)
294 PRK09242 tropinone reductase; 20.9 6.1E+02 0.013 23.7 8.8 12 255-266 9-20 (257)
295 cd00952 CHBPH_aldolase Trans-o 20.9 8.6E+02 0.019 24.4 13.9 74 232-311 25-99 (309)
296 TIGR02313 HpaI-NOT-DapA 2,4-di 20.8 8.4E+02 0.018 24.3 11.7 73 233-311 18-91 (294)
297 PRK07890 short chain dehydroge 20.8 5.1E+02 0.011 24.0 8.2 18 255-275 5-22 (258)
298 PRK08265 short chain dehydroge 20.7 7.2E+02 0.016 23.4 9.4 77 255-344 6-89 (261)
299 PRK08155 acetolactate synthase 20.7 1.5E+02 0.0033 32.2 5.1 73 338-418 79-157 (564)
300 cd07766 DHQ_Fe-ADH Dehydroquin 20.6 8.5E+02 0.018 24.3 10.9 77 290-366 24-114 (332)
301 PF08902 DUF1848: Domain of un 20.5 60 0.0013 32.6 1.8 21 294-314 2-24 (266)
302 CHL00023 ndhK NADH dehydrogena 20.5 1.9E+02 0.004 28.5 5.1 99 174-310 51-152 (225)
303 cd01538 PBP1_ABC_xylose_bindin 20.5 7.5E+02 0.016 23.6 10.0 14 369-382 142-155 (288)
304 PRK05876 short chain dehydroge 20.4 4.2E+02 0.0091 25.5 7.7 16 403-418 224-239 (275)
305 cd00950 DHDPS Dihydrodipicolin 20.4 2.2E+02 0.0047 28.0 5.7 57 254-310 33-90 (284)
306 PF11955 PORR: Plant organelle 20.4 6.5E+02 0.014 26.1 9.3 149 264-417 74-252 (335)
307 PRK05872 short chain dehydroge 20.3 7.8E+02 0.017 23.9 9.6 18 402-419 218-235 (296)
308 PF07109 Mg-por_mtran_C: Magne 20.3 1.5E+02 0.0033 25.4 3.9 71 269-344 7-81 (97)
309 PRK05443 polyphosphate kinase; 20.3 1.3E+03 0.029 26.3 13.0 113 271-385 239-425 (691)
310 COG0041 PurE Phosphoribosylcar 20.2 4.7E+02 0.01 24.5 7.3 86 256-365 4-89 (162)
311 PRK06463 fabG 3-ketoacyl-(acyl 20.2 6.8E+02 0.015 23.4 8.9 75 255-344 7-88 (255)
312 PRK06947 glucose-1-dehydrogena 20.2 6.9E+02 0.015 23.0 9.9 39 256-305 3-41 (248)
313 COG3469 Chitinase [Carbohydrat 20.1 2.2E+02 0.0047 28.9 5.5 61 254-314 98-169 (332)
314 PRK08415 enoyl-(acyl carrier p 20.1 5.5E+02 0.012 24.8 8.5 10 255-264 5-14 (274)
315 PRK07074 short chain dehydroge 20.0 5.9E+02 0.013 23.7 8.4 75 256-344 3-86 (257)
316 PRK10474 putative PTS system f 20.0 97 0.0021 25.6 2.7 51 326-377 28-79 (88)
No 1
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=100.00 E-value=8.8e-79 Score=607.44 Aligned_cols=306 Identities=40% Similarity=0.634 Sum_probs=272.4
Q ss_pred cchhhHHHHHHHHhCC--CCccceeEeeccCCCccccccccchhhhhhHHHHHHHhhcchhhhhcccCCCCccccCCCCC
Q 014420 39 PGSENQCVGLVRALGL--SDKHVLYRVTRPRGGINEWLHWLPVSVHKKLEYVIRQICGYSRLLSAARGEKPVCHPLENGG 116 (425)
Q Consensus 39 aG~~~Q~~GLa~aLgl--~~~~~~~~~~~~~~~~~~~~~~lp~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 116 (425)
|||+|||+|||+|||+ ++++ +.+.++.+| +|||..+. ..+ ..
T Consensus 1 ~Gh~~Q~~GLa~aL~~~~~~~~---~~v~~~~~~----~~lp~~~~---~~~----------------------~~---- 44 (311)
T PF06258_consen 1 PGHENQSLGLAEALGRLTPYEI---KRVDVRRPW----RWLPRLLP---APL----------------------RA---- 44 (311)
T ss_pred CchHHHHHHHHHHhcCccCcce---eEeccccch----hhcccccc---chH----------------------HH----
Confidence 7999999999999999 6655 557888876 44432110 000 00
Q ss_pred CCCCchhhhhhHHHHHHHhhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCCCCCCccEEEeccCCCCC
Q 014420 117 NVGLSSVLEADVRQIVTMARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYP 196 (425)
Q Consensus 117 ~~g~~~~~~~~~~~~~~~a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~FDlVivP~HD~~~ 196 (425)
.+. .....++++||||||||||+|+++++++||++++++++||||+|+++.+.||+||+|+||.+
T Consensus 45 ------~~~--------~~~~~~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~~~~FDlvi~p~HD~~- 109 (311)
T PF06258_consen 45 ------LLK--------PFSPALEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLPPRPFDLVIVPEHDRL- 109 (311)
T ss_pred ------hhh--------cccccccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCCccccCEEEECcccCc-
Confidence 000 00123567899999999999999999999999999999999999999999999999999985
Q ss_pred CCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHH
Q 014420 197 LTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAK 276 (425)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~ 276 (425)
++++||+.|.|+||+++++.|++++.+|.++|+++++|+++|||||+|++|.|+++++.
T Consensus 110 ---------------------~~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~ 168 (311)
T PF06258_consen 110 ---------------------PRGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAE 168 (311)
T ss_pred ---------------------CCCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHc
Q 014420 277 QLTAHLLNVLVSC-GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACST 355 (425)
Q Consensus 277 ~L~~~l~~l~~~~-gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~at 355 (425)
+|+++|.++++++ ++|+||||||||++++++|++.++..+++++|+++++|||.++|++||+||||+||+|||||||+|
T Consensus 169 ~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~t 248 (311)
T PF06258_consen 169 RLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAAT 248 (311)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHc
Confidence 9999999999876 499999999999999999999997778889999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCCCCCCCCCCC-CCcchHHHHHHHHHHHHHH
Q 014420 356 GKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTGSEDMSDSWS-YPPLNDTAEAASRVHEALA 417 (425)
Q Consensus 356 GkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g~~~~~~~~~-~~PL~et~r~A~~I~~~l~ 417 (425)
||||+|+++++.++||++||+.|++.|++++|+|..+.. .|. |+|||||+|||++|+++|.
T Consensus 249 G~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~-~~~~~~pl~et~r~A~~i~~r~~ 310 (311)
T PF06258_consen 249 GKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLE-QWTPYEPLDETDRVAAEIRERLA 310 (311)
T ss_pred CCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCccccc-ccccCCCccHHHHHHHHHHHHhh
Confidence 999999999998889999999999999999999875443 466 9999999999999999985
No 2
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-73 Score=546.81 Aligned_cols=319 Identities=33% Similarity=0.529 Sum_probs=271.0
Q ss_pred EEEEEEcCCCcchhhHHHHHHHHhCCCCccceeEeeccC----CCccccccccchhhhhhHHHHHHHhhcchhhhhcccC
Q 014420 29 RRAVVIGNGYPGSENQCVGLVRALGLSDKHVLYRVTRPR----GGINEWLHWLPVSVHKKLEYVIRQICGYSRLLSAARG 104 (425)
Q Consensus 29 ~~~~visdG~aG~~~Q~~GLa~aLgl~~~~~~~~~~~~~----~~~~~~~~~lp~~~~k~~~~~~~~~~~~~~~~~~~~~ 104 (425)
+++|+|+||++|++.||+|||+.|-.. +.+. +++.++ -|| +|+...|... +++
T Consensus 1 ~ki~aisD~RtGnt~QaiaLa~~l~r~-eytt-k~l~~~~l~~lP~-~wl~~yp~~~-------~~~------------- 57 (329)
T COG3660 1 MKIWAISDGRTGNTHQAIALAEQLTRS-EYTT-KLLEYNNLAKLPN-FWLAYYPIHI-------LRE------------- 57 (329)
T ss_pred CceEEeecCCCccHHHHHHHHHHhhcc-ceEE-EEeeccccccCch-hhhhcCccHh-------HHH-------------
Confidence 368999999999999999999999752 2211 334444 332 3444444432 211
Q ss_pred CCCccccCCCCCCCCCchhhhhhHHHHHHHhhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCCCCCCc
Q 014420 105 EKPVCHPLENGGNVGLSSVLEADVRQIVTMARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRF 184 (425)
Q Consensus 105 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~F 184 (425)
.|+.- .+-....+|||+|+|||+|.++++.+|+.+++ .++|||||||++.+.|
T Consensus 58 ------------------l~~~~--------~~r~p~~~Pdl~I~aGrrta~l~~~lkk~~~~-~~vVqI~~Prlp~~~f 110 (329)
T COG3660 58 ------------------LFGPR--------LSRKPEQRPDLIITAGRRTAPLAFYLKKKFGG-IKVVQIQDPRLPYNHF 110 (329)
T ss_pred ------------------hhcCc--------cccCccCCCceEEecccchhHHHHHHHHhcCC-ceEEEeeCCCCCcccc
Confidence 11110 01123468999999999999999999999999 9999999999999999
Q ss_pred cEEEeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCC
Q 014420 185 DLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGP 264 (425)
Q Consensus 185 DlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~ 264 (425)
|+||+|+||...+ +. -.++|++...|+||+|++++|+..++++...+ ++++++|+|+|||+
T Consensus 111 Dlvivp~HD~~~~----~s--------------~~~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~ 171 (329)
T COG3660 111 DLVIVPYHDWREE----LS--------------DQGPNILPINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGN 171 (329)
T ss_pred eEEeccchhhhhh----hh--------------ccCCceeeccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCC
Confidence 9999999998521 00 14799999999999999999998888887766 89999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHHH-hcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCC--CCChHHHHHHHcCeEEE
Q 014420 265 TGCCRYGSDLAKQLTAHLLNVLV-SCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGE--EPNPHLGHLAWADAFVV 341 (425)
Q Consensus 265 s~~~~~~~~~a~~L~~~l~~l~~-~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~--g~NPy~~~La~AD~ivV 341 (425)
|+.|.|++|.+.+++..+...+. ++|+++||+|||||+.+...|++.+...+ +.+|+++ |.|||.++||+||+||+
T Consensus 172 nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~ 250 (329)
T COG3660 172 NKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSP-GIVWNNEDTGYNPYIDMLAAADYIIS 250 (329)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCc-eeEeCCCCCCCCchHHHHhhcceEEE
Confidence 99999999999999888888777 56899999999999999999999997765 5599986 99999999999999999
Q ss_pred cCCChHHHHHHHHcCCcEEEEcCCCC-ChhHHHHHHHHHHCCCeeecCCCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 014420 342 TADSISLISEACSTGKPVYVVGAERC-TWKFTDFHKSLRERGVVRPFTGSEDMSDSWSYPPLNDTAEAASRVHEALA 417 (425)
Q Consensus 342 TaDSvSMlsEA~atGkPV~v~~l~~~-~~k~~rf~~~L~~~G~~r~f~g~~~~~~~~~~~PL~et~r~A~~I~~~l~ 417 (425)
|+||+||+||||||||||+++.+++. +.||..||+.|.|++++|+|+|+.-.++.|+|+|||||+|||++|+.+|.
T Consensus 251 TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~~~e~ysy~PLnEt~RiA~~Ira~l~ 327 (329)
T COG3660 251 TADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNLALEEYSYKPLNETERIAEEIRAELG 327 (329)
T ss_pred ecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchhhhcccccCCchHHHHHHHHHHHHhC
Confidence 99999999999999999999999988 78999999999999999999997666799999999999999999999875
No 3
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.4e-17 Score=169.86 Aligned_cols=217 Identities=18% Similarity=0.138 Sum_probs=161.6
Q ss_pred HHHhhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC------CCCCCCccEEEeccCC--CCCCCccccc
Q 014420 132 VTMARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP------RVHLNRFDLVITPRHD--YYPLTPEGQE 203 (425)
Q Consensus 132 ~~~a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P------r~~~~~FDlVivP~HD--~~~l~~~~~~ 203 (425)
+.+++..+....||+|||+|++.+.+...+++..+. +.++|+||- ++.....|.|.+.+.+ .+
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~i-Pv~ihEqn~~~G~ank~~~~~a~~V~~~f~~~~~~-------- 150 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGI-PVIIHEQNAVPGLANKILSKFAKKVASAFPKLEAG-------- 150 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCC-CEEEEecCCCcchhHHHhHHhhceeeecccccccc--------
Confidence 345677888999999999999999999999988886 789999997 5677888999998884 22
Q ss_pred cchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHH
Q 014420 204 KIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLL 283 (425)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~ 283 (425)
....|+..| |. ||+++....+...++ +.....+.+++++||+.|...+|+..-..+ ..+.
T Consensus 151 --------------~~~~~~~~t-G~--Pvr~~~~~~~~~~~~--~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~-~~l~ 210 (357)
T COG0707 151 --------------VKPENVVVT-GI--PVRPEFEELPAAEVR--KDGRLDKKTILVTGGSQGAKALNDLVPEAL-AKLA 210 (357)
T ss_pred --------------CCCCceEEe-cC--cccHHhhccchhhhh--hhccCCCcEEEEECCcchhHHHHHHHHHHH-HHhh
Confidence 133567777 88 788877642222232 222226788999999999999988654333 3333
Q ss_pred H---HHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEE
Q 014420 284 N---VLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVY 360 (425)
Q Consensus 284 ~---l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~ 360 (425)
+ +++++| ....+.++..+.....+.+.++ .+.|..+|++||.+|++++ +++|+|+++.|+|++
T Consensus 211 ~~~~v~~~~G-----------~~~~~~~~~~~~~~~~~~v~~f--~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a~g~P~I 276 (357)
T COG0707 211 NRIQVIHQTG-----------KNDLEELKSAYNELGVVRVLPF--IDDMAALLAAADLVISRAG-ALTIAELLALGVPAI 276 (357)
T ss_pred hCeEEEEEcC-----------cchHHHHHHHHhhcCcEEEeeH--HhhHHHHHHhccEEEeCCc-ccHHHHHHHhCCCEE
Confidence 2 223333 2223344343432111555566 5669999999999999999 999999999999999
Q ss_pred EEcCCCCChhHHHH-HHHHHHCCCeeecCCCC
Q 014420 361 VVGAERCTWKFTDF-HKSLRERGVVRPFTGSE 391 (425)
Q Consensus 361 v~~l~~~~~k~~rf-~~~L~~~G~~r~f~g~~ 391 (425)
++|++...+.+|.. ++.|+++|++..+.+.+
T Consensus 277 liP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~ 308 (357)
T COG0707 277 LVPYPPGADGHQEYNAKFLEKAGAALVIRQSE 308 (357)
T ss_pred EeCCCCCccchHHHHHHHHHhCCCEEEecccc
Confidence 99999998899997 99999999999997653
No 4
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.64 E-value=7.1e-14 Score=142.03 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=148.7
Q ss_pred hhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC------CCCCCCccEEEeccCCCCCCCccccccchhh
Q 014420 135 ARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP------RVHLNRFDLVITPRHDYYPLTPEGQEKIPQF 208 (425)
Q Consensus 135 a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P------r~~~~~FDlVivP~HD~~~l~~~~~~~~~~~ 208 (425)
+...+.+..||+||+.|++++.+...+++..+. +.++|+||- ++.....|.|++...+..
T Consensus 83 ~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~-p~~i~e~n~~~g~~nr~~~~~a~~v~~~f~~~~------------- 148 (352)
T PRK12446 83 AYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRV-PVLLHESDMTPGLANKIALRFASKIFVTFEEAA------------- 148 (352)
T ss_pred HHHHHHhcCCCEEEecCchhhHHHHHHHHHcCC-CEEEECCCCCccHHHHHHHHhhCEEEEEccchh-------------
Confidence 355678899999999999999999999888886 678999986 456777899999776531
Q ss_pred hhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh
Q 014420 209 LRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS 288 (425)
Q Consensus 209 ~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~ 288 (425)
.+++ ..++++| |+ ||+++.....++.....++..+...+++++||+.+...+|+.....+ .. +. .
T Consensus 149 --~~~~-----~~k~~~t-G~--Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l-~~---l~-~ 213 (352)
T PRK12446 149 --KHLP-----KEKVIYT-GS--PVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREAL-PE---LL-L 213 (352)
T ss_pred --hhCC-----CCCeEEE-CC--cCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHH-Hh---hc-c
Confidence 1121 2567777 98 67776543222233344554456678999999999988887543222 22 21 1
Q ss_pred cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCC-ChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCC
Q 014420 289 CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEP-NPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERC 367 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~-NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~ 367 (425)
...+...+-+. +..+.+.+ . .++.+.++ . +.+..+|++||.+|+.++ .+.++|+++.|+|.+++|++..
T Consensus 214 ~~~vv~~~G~~---~~~~~~~~-~---~~~~~~~f--~~~~m~~~~~~adlvIsr~G-~~t~~E~~~~g~P~I~iP~~~~ 283 (352)
T PRK12446 214 KYQIVHLCGKG---NLDDSLQN-K---EGYRQFEY--VHGELPDILAITDFVISRAG-SNAIFEFLTLQKPMLLIPLSKF 283 (352)
T ss_pred CcEEEEEeCCc---hHHHHHhh-c---CCcEEecc--hhhhHHHHHHhCCEEEECCC-hhHHHHHHHcCCCEEEEcCCCC
Confidence 23444444433 23333322 2 12334444 3 568899999999999988 8999999999999999998755
Q ss_pred C-hhHHHH-HHHHHHCCCeeecCC
Q 014420 368 T-WKFTDF-HKSLRERGVVRPFTG 389 (425)
Q Consensus 368 ~-~k~~rf-~~~L~~~G~~r~f~g 389 (425)
. ..+|.. .+.|.+.|++..+..
T Consensus 284 ~~~~~Q~~Na~~l~~~g~~~~l~~ 307 (352)
T PRK12446 284 ASRGDQILNAESFERQGYASVLYE 307 (352)
T ss_pred CCCchHHHHHHHHHHCCCEEEcch
Confidence 4 345554 899999999987753
No 5
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.18 E-value=4.6e-10 Score=115.36 Aligned_cols=229 Identities=13% Similarity=0.044 Sum_probs=130.4
Q ss_pred HHHHHHhhhhccCCCCcEEEEecCcchHHHHH-HHHHcCCCeEEEEecCC----------CCCCCCccEEEeccCCCCCC
Q 014420 129 RQIVTMARETYEKDGPLLVVASGRDTISIASS-IKRLASDNVFVVQIQHP----------RVHLNRFDLVITPRHDYYPL 197 (425)
Q Consensus 129 ~~~~~~a~~~l~~~~PdLVI~~Gr~t~~~~~~-lrr~~~~~~~vV~i~~P----------r~~~~~FDlVivP~HD~~~l 197 (425)
.+...++...+....||+||+.|.-+.++.+. .++..+. +.++|+ .| +...+..|.|++......
T Consensus 75 ~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gi-p~v~~i-~P~~waw~~~~~r~l~~~~d~v~~~~~~e~-- 150 (385)
T TIGR00215 75 LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGI-KIIYYI-SPQVWAWRKWRAKKIEKATDFLLAILPFEK-- 150 (385)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCC-CEEEEe-CCcHhhcCcchHHHHHHHHhHhhccCCCcH--
Confidence 44556677788889999999999644343331 3334454 556664 44 244567798888766531
Q ss_pred CccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH--HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHH
Q 014420 198 TPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR--SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLA 275 (425)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~--~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a 275 (425)
+++. ..+-++..+ |+ ++..+... ..+....+.++..+...+++++||+.++.. ....
T Consensus 151 -------------~~~~---~~g~~~~~v-Gn--Pv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei--~k~~ 209 (385)
T TIGR00215 151 -------------AFYQ---KKNVPCRFV-GH--PLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEV--EKLF 209 (385)
T ss_pred -------------HHHH---hcCCCEEEE-CC--chhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHH--HHhH
Confidence 1221 022345444 64 66543321 123334455665455667778899887652 1122
Q ss_pred HHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHH
Q 014420 276 KQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEAC 353 (425)
Q Consensus 276 ~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~ 353 (425)
..+.+.+..+.... -.+.|....-+..+..+.+.+.+.....+.++.+ .+..+|++||.+|++++ ++.+ ||+
T Consensus 210 ~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~aADl~V~~SG-t~tl-Ea~ 283 (385)
T TIGR00215 210 PLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG----DARKAMFAADAALLASG-TAAL-EAA 283 (385)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc----hHHHHHHhCCEEeecCC-HHHH-HHH
Confidence 22333333333332 2344544444444444555444433234544432 34579999999999998 4455 999
Q ss_pred HcCCcEEEE----cCCCCChhH------HHHHHHHHHCCCeeecC
Q 014420 354 STGKPVYVV----GAERCTWKF------TDFHKSLRERGVVRPFT 388 (425)
Q Consensus 354 atGkPV~v~----~l~~~~~k~------~rf~~~L~~~G~~r~f~ 388 (425)
++|+|++++ |++..-.|+ -...+.|.+++++-.|-
T Consensus 284 a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~ 328 (385)
T TIGR00215 284 LIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELL 328 (385)
T ss_pred HcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhc
Confidence 999999998 666543332 22356667777766553
No 6
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.04 E-value=3.9e-08 Score=97.31 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=127.7
Q ss_pred hhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC------CCCCCccEEEeccCCCCCCCccccccchhh
Q 014420 135 ARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR------VHLNRFDLVITPRHDYYPLTPEGQEKIPQF 208 (425)
Q Consensus 135 a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr------~~~~~FDlVivP~HD~~~l~~~~~~~~~~~ 208 (425)
....+++..||+|++.+......+..+++..+. +++++.++.. +....+|.|+++..+..
T Consensus 81 ~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~-p~v~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~------------- 146 (350)
T cd03785 81 ARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGI-PLVIHEQNAVPGLANRLLARFADRVALSFPETA------------- 146 (350)
T ss_pred HHHHHHhcCCCEEEECCCCcchHHHHHHHHhCC-CEEEEcCCCCccHHHHHHHHhhCEEEEcchhhh-------------
Confidence 345566778999999998776666666666665 4556665532 22345799888754431
Q ss_pred hhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh
Q 014420 209 LRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS 288 (425)
Q Consensus 209 ~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~ 288 (425)
+++ ...++.++ |+ .++.+....... ...+...+...+++++||..+...+.+ .+.+.+..+...
T Consensus 147 --~~~-----~~~~~~~i-~n--~v~~~~~~~~~~--~~~~~~~~~~~~i~~~~g~~~~~~~~~----~l~~a~~~l~~~ 210 (350)
T cd03785 147 --KYF-----PKDKAVVT-GN--PVREEILALDRE--RARLGLRPGKPTLLVFGGSQGARAINE----AVPEALAELLRK 210 (350)
T ss_pred --hcC-----CCCcEEEE-CC--CCchHHhhhhhh--HHhcCCCCCCeEEEEECCcHhHHHHHH----HHHHHHHHhhcc
Confidence 111 23466555 54 666554322111 334444556677888898765432222 121222222212
Q ss_pred cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCC
Q 014420 289 CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCT 368 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~ 368 (425)
.-.+++.......++..+.+.+ + ..++.+.+. .+.+..+|+.||.+|++++ .+++.||+++|+||++.+.+...
T Consensus 211 ~~~~~~i~G~g~~~~l~~~~~~-~--~~~v~~~g~--~~~~~~~l~~ad~~v~~sg-~~t~~Eam~~G~Pvv~~~~~~~~ 284 (350)
T cd03785 211 RLQVIHQTGKGDLEEVKKAYEE-L--GVNYEVFPF--IDDMAAAYAAADLVISRAG-ASTVAELAALGLPAILIPLPYAA 284 (350)
T ss_pred CeEEEEEcCCccHHHHHHHHhc-c--CCCeEEeeh--hhhHHHHHHhcCEEEECCC-HhHHHHHHHhCCCEEEeecCCCC
Confidence 2233323333333333333332 2 246766665 3688999999999999887 57899999999999998877644
Q ss_pred hhHHHH-HHHHHHCCCeeec
Q 014420 369 WKFTDF-HKSLRERGVVRPF 387 (425)
Q Consensus 369 ~k~~rf-~~~L~~~G~~r~f 387 (425)
..++.. .+.+.+.|....+
T Consensus 285 ~~~~~~~~~~l~~~g~g~~v 304 (350)
T cd03785 285 DDHQTANARALVKAGAAVLI 304 (350)
T ss_pred CCcHHHhHHHHHhCCCEEEE
Confidence 555554 4666776654444
No 7
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.02 E-value=9.7e-08 Score=95.53 Aligned_cols=213 Identities=18% Similarity=0.124 Sum_probs=123.5
Q ss_pred hhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC------CCCCCccEEEeccCCCCCCCccccccchhh
Q 014420 135 ARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR------VHLNRFDLVITPRHDYYPLTPEGQEKIPQF 208 (425)
Q Consensus 135 a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr------~~~~~FDlVivP~HD~~~l~~~~~~~~~~~ 208 (425)
....+....||+|++.+..+..++..+++..+. +++++..+.. +.....|.+++..++.+
T Consensus 83 ~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~-p~v~~~~~~~~~~~~r~~~~~~d~ii~~~~~~~------------- 148 (357)
T PRK00726 83 ARKILKRFKPDVVVGFGGYVSGPGGLAARLLGI-PLVIHEQNAVPGLANKLLARFAKKVATAFPGAF------------- 148 (357)
T ss_pred HHHHHHhcCCCEEEECCCcchhHHHHHHHHcCC-CEEEEcCCCCccHHHHHHHHHhchheECchhhh-------------
Confidence 345566778999999998877666666776665 5556655431 23456788887665431
Q ss_pred hhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh
Q 014420 209 LRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS 288 (425)
Q Consensus 209 ~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~ 288 (425)
.. + ...++.++ ++ +++.+...... -..++...+...+++++||..+...++.- +.+.+.++. .
T Consensus 149 -~~-~-----~~~~i~vi-~n--~v~~~~~~~~~--~~~~~~~~~~~~~i~~~gg~~~~~~~~~~----l~~a~~~~~-~ 211 (357)
T PRK00726 149 -PE-F-----FKPKAVVT-GN--PVREEILALAA--PPARLAGREGKPTLLVVGGSQGARVLNEA----VPEALALLP-E 211 (357)
T ss_pred -hc-c-----CCCCEEEE-CC--CCChHhhcccc--hhhhccCCCCCeEEEEECCcHhHHHHHHH----HHHHHHHhh-h
Confidence 01 1 23566555 44 66665432211 11233333456677888886543333221 112222222 1
Q ss_pred cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCC
Q 014420 289 CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCT 368 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~ 368 (425)
....++...+-..++..+.+ + +.- .+.+.++ .+.+..+|+.||.++++++ .+.+.||.++|+||++++.++..
T Consensus 212 ~~~~~~~~G~g~~~~~~~~~-~-~~~--~v~~~g~--~~~~~~~~~~~d~~i~~~g-~~~~~Ea~~~g~Pvv~~~~~~~~ 284 (357)
T PRK00726 212 ALQVIHQTGKGDLEEVRAAY-A-AGI--NAEVVPF--IDDMAAAYAAADLVICRAG-ASTVAELAAAGLPAILVPLPHAA 284 (357)
T ss_pred CcEEEEEcCCCcHHHHHHHh-h-cCC--cEEEeeh--HhhHHHHHHhCCEEEECCC-HHHHHHHHHhCCCEEEecCCCCC
Confidence 12333444444434444443 2 322 2656665 3678899999999999987 56688999999999999875433
Q ss_pred hhHHH-HHHHHHHCCCee
Q 014420 369 WKFTD-FHKSLRERGVVR 385 (425)
Q Consensus 369 ~k~~r-f~~~L~~~G~~r 385 (425)
...+. ..+.+.+.|...
T Consensus 285 ~~~~~~~~~~i~~~~~g~ 302 (357)
T PRK00726 285 DDHQTANARALVDAGAAL 302 (357)
T ss_pred cCcHHHHHHHHHHCCCEE
Confidence 33333 255667776543
No 8
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.99 E-value=2.6e-07 Score=93.51 Aligned_cols=218 Identities=13% Similarity=0.118 Sum_probs=113.9
Q ss_pred hhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEE-e----cCCCCCCCCccEEEeccCCCCCCCccccccchhhh
Q 014420 135 ARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQ-I----QHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFL 209 (425)
Q Consensus 135 a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~-i----~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~ 209 (425)
....+....||+||+++...... .+++..+.+..++. + .+.++-.+..|.++++.++.. +.+
T Consensus 96 l~~~l~~~~pD~Vi~~~~~~~~~--~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s~~~~-----------~~l 162 (380)
T PRK13609 96 LKLLLQAEKPDIVINTFPIIAVP--ELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVATDHVK-----------KVL 162 (380)
T ss_pred HHHHHHHhCcCEEEEcChHHHHH--HHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECCHHHH-----------HHH
Confidence 35567778899999987765433 23333332222232 1 233567789999999876531 111
Q ss_pred hcccCCCCCCCCcEEEecCCCCcCChHHHH-HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh
Q 014420 210 RRWITPCEPPDGHVVLTTGALHQIDSAALR-SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS 288 (425)
Q Consensus 210 ~~~~~~~~~~~~NVl~T~Galh~v~~~~L~-~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~ 288 (425)
.+. | . +..++.++ |. ++.+.... ........+++..+...+++++||.-+... + ...+++.+.+. .
T Consensus 163 ~~~--g-i-~~~ki~v~-G~--p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k-~---~~~li~~l~~~--~ 229 (380)
T PRK13609 163 VDI--G-V-PPEQVVET-GI--PIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLG-N---VKELCQSLMSV--P 229 (380)
T ss_pred HHc--C-C-ChhHEEEE-Cc--ccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCc-C---HHHHHHHHhhC--C
Confidence 111 0 0 22466665 76 44432211 011223455655455567777888765321 1 11232332211 1
Q ss_pred cCeEEEEeCCCCcHHHHHHHHHhhCCC-CcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEc-CCC
Q 014420 289 CGSIRISFSMRTPEKVSKIIIKELGNN-PKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVG-AER 366 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~-l~~ 366 (425)
+-.+.+...+. ....+.|++..... .++.+.++ .+.+..+|+.||.+|..+. ...+.||+++|+||++.. .++
T Consensus 230 ~~~~viv~G~~--~~~~~~l~~~~~~~~~~v~~~g~--~~~~~~l~~~aD~~v~~~g-g~t~~EA~a~g~PvI~~~~~~g 304 (380)
T PRK13609 230 DLQVVVVCGKN--EALKQSLEDLQETNPDALKVFGY--VENIDELFRVTSCMITKPG-GITLSEAAALGVPVILYKPVPG 304 (380)
T ss_pred CcEEEEEeCCC--HHHHHHHHHHHhcCCCcEEEEec--hhhHHHHHHhccEEEeCCC-chHHHHHHHhCCCEEECCCCCC
Confidence 23555544432 23344454433222 25766655 2347799999998876444 444789999999998853 443
Q ss_pred CChhHHHHHHHHHHCCCeee
Q 014420 367 CTWKFTDFHKSLRERGVVRP 386 (425)
Q Consensus 367 ~~~k~~rf~~~L~~~G~~r~ 386 (425)
.. ..-.+.+.+.|....
T Consensus 305 ~~---~~n~~~~~~~G~~~~ 321 (380)
T PRK13609 305 QE---KENAMYFERKGAAVV 321 (380)
T ss_pred cc---hHHHHHHHhCCcEEE
Confidence 21 111234456666543
No 9
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.88 E-value=4.5e-08 Score=101.33 Aligned_cols=195 Identities=16% Similarity=0.086 Sum_probs=117.1
Q ss_pred HhhhhccCC--CCcEEEEecCcchHHHHHHHHHcCCCeEEE---EecCCC----------------------------CC
Q 014420 134 MARETYEKD--GPLLVVASGRDTISIASSIKRLASDNVFVV---QIQHPR----------------------------VH 180 (425)
Q Consensus 134 ~a~~~l~~~--~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV---~i~~Pr----------------------------~~ 180 (425)
++...+.+. .||+|||+|++. .+..+++++. ++++ |.||-- +.
T Consensus 82 ~~~~~~~~~~~~p~~v~~~Gg~v---~~~aA~~~~~-p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~ 157 (396)
T TIGR03492 82 GQWRALRKWAKKGDLIVAVGDIV---PLLFAWLSGK-PYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMR 157 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECcHH---HHHHHHHcCC-CceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhh
Confidence 344556666 899999999998 4444456665 6677 777643 22
Q ss_pred CCCccEEEeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEE
Q 014420 181 LNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVN 260 (425)
Q Consensus 181 ~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavL 260 (425)
.+..|.|+++.... .+++. ..+-++..| |+ |+.++...... . +..+...++++
T Consensus 158 ~~~a~~v~~~~~~t---------------~~~l~---~~g~k~~~v-Gn--Pv~d~l~~~~~----~--~l~~~~~~lll 210 (396)
T TIGR03492 158 SRRCLAVFVRDRLT---------------ARDLR---RQGVRASYL-GN--PMMDGLEPPER----K--PLLTGRFRIAL 210 (396)
T ss_pred chhhCEEeCCCHHH---------------HHHHH---HCCCeEEEe-Cc--CHHhcCccccc----c--ccCCCCCEEEE
Confidence 35668888877543 12222 134567666 88 55554321111 1 22345568899
Q ss_pred EcCCCCCcccCHHHHHHHHHHHHHHHHh-cCeEEEEe-CCCCcHHHHHHHHH-hhCC------------CCcEEEecCCC
Q 014420 261 VGGPTGCCRYGSDLAKQLTAHLLNVLVS-CGSIRISF-SMRTPEKVSKIIIK-ELGN------------NPKVHIWDGEE 325 (425)
Q Consensus 261 IGG~s~~~~~~~~~a~~L~~~l~~l~~~-~gsl~iT~-SRRTP~~~~~~L~~-~l~~------------~~~v~iwd~~g 325 (425)
+||+.+....+. ...+.+.+..+..+ .-.+.+.+ ....-+++.+.+.+ .+.. ..++.+..+
T Consensus 211 LpGSR~ae~~~~--lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~-- 286 (396)
T TIGR03492 211 LPGSRPPEAYRN--LKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG-- 286 (396)
T ss_pred ECCCCHHHHHcc--HHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec--
Confidence 999998777765 11233444444332 23444444 44444555555543 1110 011334333
Q ss_pred CChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 326 PNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
.+.+..+|++||.+|++++.++ .|+++.|+|++++|.+
T Consensus 287 ~~~~~~~l~~ADlvI~rSGt~T--~E~a~lg~P~Ilip~~ 324 (396)
T TIGR03492 287 RGAFAEILHWADLGIAMAGTAT--EQAVGLGKPVIQLPGK 324 (396)
T ss_pred hHhHHHHHHhCCEEEECcCHHH--HHHHHhCCCEEEEeCC
Confidence 4457899999999999999444 9999999999999975
No 10
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.86 E-value=2.6e-07 Score=94.32 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=115.4
Q ss_pred hhhccCCCCcEEEEecCc-chHHHHHHHHHc----CCCeEEEEecCC-----CCCCCCccEEEeccCCCCCCCccccccc
Q 014420 136 RETYEKDGPLLVVASGRD-TISIASSIKRLA----SDNVFVVQIQHP-----RVHLNRFDLVITPRHDYYPLTPEGQEKI 205 (425)
Q Consensus 136 ~~~l~~~~PdLVI~~Gr~-t~~~~~~lrr~~----~~~~~vV~i~~P-----r~~~~~FDlVivP~HD~~~l~~~~~~~~ 205 (425)
.+.++..+||+||++--. +..++..++++. ...++++.+.|- .+..+..|.++++.++..
T Consensus 93 ~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~~~---------- 162 (382)
T PLN02605 93 AKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEEVA---------- 162 (382)
T ss_pred HHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHHHH----------
Confidence 456777899999997322 111233333322 123445444443 567788999999876531
Q ss_pred hhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH--HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHH
Q 014420 206 PQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR--SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLL 283 (425)
Q Consensus 206 ~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~--~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~ 283 (425)
..+.+..+ +.+++.++ |. +++++... ..+.+...+++..+...+++++||..+.-.+.. +++.+.
T Consensus 163 ~~l~~~g~-----~~~ki~v~-g~--~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~-----li~~l~ 229 (382)
T PLN02605 163 KRALKRGL-----EPSQIRVY-GL--PIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEE-----TARALG 229 (382)
T ss_pred HHHHHcCC-----CHHHEEEE-Cc--ccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHH-----HHHHHH
Confidence 01111112 23567666 65 66654321 223445667776666778889999766322222 233343
Q ss_pred HHH------HhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCC
Q 014420 284 NVL------VSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGK 357 (425)
Q Consensus 284 ~l~------~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGk 357 (425)
.++ .....+.+.+-+- ++..+.|++. ....++.+..+. +-+..+|+.||.+|..+.+ +.+.||+++|+
T Consensus 230 ~~~~~~~~~~~~~~~~vi~G~~--~~~~~~L~~~-~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~g~-~ti~EAma~g~ 303 (382)
T PLN02605 230 DSLYDKNLGKPIGQVVVICGRN--KKLQSKLESR-DWKIPVKVRGFV--TNMEEWMGACDCIITKAGP-GTIAEALIRGL 303 (382)
T ss_pred HhhccccccCCCceEEEEECCC--HHHHHHHHhh-cccCCeEEEecc--ccHHHHHHhCCEEEECCCc-chHHHHHHcCC
Confidence 322 1123333333321 3445566543 222356666653 4588999999999998874 56899999999
Q ss_pred cEEEEcC
Q 014420 358 PVYVVGA 364 (425)
Q Consensus 358 PV~v~~l 364 (425)
||++.+.
T Consensus 304 PvI~~~~ 310 (382)
T PLN02605 304 PIILNGY 310 (382)
T ss_pred CEEEecC
Confidence 9999874
No 11
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.83 E-value=3e-07 Score=94.48 Aligned_cols=201 Identities=13% Similarity=0.110 Sum_probs=112.9
Q ss_pred HhhhhccCCCCcEEEEecCcchHHHHHHHHHcCCC-eEEEEecC----CCCCCCCccEEEeccCCCCCCCccccccchhh
Q 014420 134 MARETYEKDGPLLVVASGRDTISIASSIKRLASDN-VFVVQIQH----PRVHLNRFDLVITPRHDYYPLTPEGQEKIPQF 208 (425)
Q Consensus 134 ~a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~-~~vV~i~~----Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~ 208 (425)
...+.+....||+||+++-.. ....+++..+.+ +++.++.| .++.....|.++++.++.. ..+
T Consensus 95 ~l~~~l~~~kPDvVi~~~p~~--~~~~l~~~~~~~iP~~~v~td~~~~~~w~~~~~d~~~v~s~~~~----------~~l 162 (391)
T PRK13608 95 KLINLLIKEKPDLILLTFPTP--VMSVLTEQFNINIPVATVMTDYRLHKNWITPYSTRYYVATKETK----------QDF 162 (391)
T ss_pred HHHHHHHHhCcCEEEECCcHH--HHHHHHHhcCCCCCEEEEeCCCCcccccccCCCCEEEECCHHHH----------HHH
Confidence 345567778999999974432 233334333222 33334444 3566778899999866531 001
Q ss_pred hhcccCCCCCCCCcEEEecCCCCcCChHHHHH-HHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH
Q 014420 209 LRRWITPCEPPDGHVVLTTGALHQIDSAALRS-AASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV 287 (425)
Q Consensus 209 ~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~-a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~ 287 (425)
.+.-+ +..+|.++ |. ++++..... ...++...++..+...++++.||.-+.. . ....+.+.+ +.
T Consensus 163 ~~~gi-----~~~ki~v~-Gi--Pv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~---k-~~~~li~~~---~~ 227 (391)
T PRK13608 163 IDVGI-----DPSTVKVT-GI--PIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVS---K-GFDTMITDI---LA 227 (391)
T ss_pred HHcCC-----CHHHEEEE-Ce--ecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccc---h-hHHHHHHHH---Hh
Confidence 11111 12456665 66 566543211 1234455666555556677778865521 1 111222322 22
Q ss_pred h--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEc-C
Q 014420 288 S--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVG-A 364 (425)
Q Consensus 288 ~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~-l 364 (425)
. +..+.+.+.+ .++..+.+.+.+....++.+..+ .+.+..+|+.||.+|..+. ...++||+++|+|++++. .
T Consensus 228 ~~~~~~~vvv~G~--~~~l~~~l~~~~~~~~~v~~~G~--~~~~~~~~~~aDl~I~k~g-g~tl~EA~a~G~PvI~~~~~ 302 (391)
T PRK13608 228 KSANAQVVMICGK--SKELKRSLTAKFKSNENVLILGY--TKHMNEWMASSQLMITKPG-GITISEGLARCIPMIFLNPA 302 (391)
T ss_pred cCCCceEEEEcCC--CHHHHHHHHHHhccCCCeEEEec--cchHHHHHHhhhEEEeCCc-hHHHHHHHHhCCCEEECCCC
Confidence 2 2355444432 23445556554443346766666 4568999999999998766 456899999999999984 4
Q ss_pred CC
Q 014420 365 ER 366 (425)
Q Consensus 365 ~~ 366 (425)
++
T Consensus 303 pg 304 (391)
T PRK13608 303 PG 304 (391)
T ss_pred CC
Confidence 43
No 12
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.80 E-value=1.6e-07 Score=94.68 Aligned_cols=196 Identities=14% Similarity=0.081 Sum_probs=103.9
Q ss_pred HhhhhccCCCCcEEEEecCcchHH--HHHHHHHcCCCeEEEEecCCC--CC-------CCCccEEEeccCCCCCCCcccc
Q 014420 134 MARETYEKDGPLLVVASGRDTISI--ASSIKRLASDNVFVVQIQHPR--VH-------LNRFDLVITPRHDYYPLTPEGQ 202 (425)
Q Consensus 134 ~a~~~l~~~~PdLVI~~Gr~t~~~--~~~lrr~~~~~~~vV~i~~Pr--~~-------~~~FDlVivP~HD~~~l~~~~~ 202 (425)
..+..+....||+||+.|.....+ +..+ ++.+. +.++++++.. +. .+.+|.|+++.....
T Consensus 76 ~~~~~l~~~kPdivi~~~~~~~~~~~a~~a-~~~~i-p~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~------- 146 (380)
T PRK00025 76 RLKRRLLAEPPDVFIGIDAPDFNLRLEKKL-RKAGI-PTIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEA------- 146 (380)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHHHHHH-HHCCC-CEEEEeCCchhhcCchHHHHHHHHHhhheeCCccCH-------
Confidence 446667788999999999433333 2223 33454 5556655421 11 235688988776531
Q ss_pred ccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH-HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHH
Q 014420 203 EKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR-SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAH 281 (425)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~-~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~ 281 (425)
+++. ..+.++..+ |+ ++...... ..+..+..+++..+...+++++||+.+.. .+ .....+.+.
T Consensus 147 --------~~~~---~~g~~~~~~-G~--p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~-~~-~~~~~l~~a 210 (380)
T PRK00025 147 --------AFYD---KLGVPVTFV-GH--PLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQE-IK-RLLPPFLKA 210 (380)
T ss_pred --------HHHH---hcCCCeEEE-Cc--CHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHH-HH-HHHHHHHHH
Confidence 1111 012235554 65 44332110 11233445666444556677888865543 11 111223344
Q ss_pred HHHHHHhcC--eEEEEeCCCCcHHHHHHHHHhhCC--CCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCC
Q 014420 282 LLNVLVSCG--SIRISFSMRTPEKVSKIIIKELGN--NPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGK 357 (425)
Q Consensus 282 l~~l~~~~g--sl~iT~SRRTP~~~~~~L~~~l~~--~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGk 357 (425)
+..+.+... .+.+.+. -+ +..+.+++.+.. ...+.+++ +.+..+|++||.+|++++ .+.+ ||+++|+
T Consensus 211 ~~~l~~~~~~~~~ii~~~--~~-~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~aDl~v~~sG-~~~l-Ea~a~G~ 281 (380)
T PRK00025 211 AQLLQQRYPDLRFVLPLV--NP-KRREQIEEALAEYAGLEVTLLD----GQKREAMAAADAALAASG-TVTL-ELALLKV 281 (380)
T ss_pred HHHHHHhCCCeEEEEecC--Ch-hhHHHHHHHHhhcCCCCeEEEc----ccHHHHHHhCCEEEECcc-HHHH-HHHHhCC
Confidence 444443332 4444432 12 222233332222 12355553 257899999999999887 6666 9999999
Q ss_pred cEEEEc
Q 014420 358 PVYVVG 363 (425)
Q Consensus 358 PV~v~~ 363 (425)
||++.+
T Consensus 282 PvI~~~ 287 (380)
T PRK00025 282 PMVVGY 287 (380)
T ss_pred CEEEEE
Confidence 999885
No 13
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.74 E-value=1.8e-06 Score=85.36 Aligned_cols=208 Identities=14% Similarity=0.077 Sum_probs=113.9
Q ss_pred hhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC------CCCCCCccEEEeccCCCCCCCccccccchhh
Q 014420 135 ARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP------RVHLNRFDLVITPRHDYYPLTPEGQEKIPQF 208 (425)
Q Consensus 135 a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P------r~~~~~FDlVivP~HD~~~l~~~~~~~~~~~ 208 (425)
....+.+..||+|++.+..+..++..+++..+.+ ++++..+. ++-.+..|.+++..++..
T Consensus 82 l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~------------- 147 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIP-LFHHEQNAVPGLTNKLLSRFAKKVLISFPGAK------------- 147 (348)
T ss_pred HHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCC-EEEECCCCCccHHHHHHHHHhCeeEECchhHh-------------
Confidence 3456777889999999988777777777777764 44555432 223356788888766431
Q ss_pred hhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh
Q 014420 209 LRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS 288 (425)
Q Consensus 209 ~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~ 288 (425)
+++ +.. ..|+ +++.+...... -...+...+...+++.+||..+.-.+.+ .+.+.+..+...
T Consensus 148 --~~~--------~~~-~i~n--~v~~~~~~~~~--~~~~~~~~~~~~~i~~~gg~~~~~~~~~----~l~~a~~~l~~~ 208 (348)
T TIGR01133 148 --DHF--------EAV-LVGN--PVRQEIRSLPV--PRERFGLREGKPTILVLGGSQGAKILNE----LVPKALAKLAEK 208 (348)
T ss_pred --hcC--------Cce-EEcC--CcCHHHhcccc--hhhhcCCCCCCeEEEEECCchhHHHHHH----HHHHHHHHHhhc
Confidence 111 111 2243 56544321110 0123433345667788898655322111 121222233222
Q ss_pred cCeEEEEeCCCCcHHHHHHHHHhhCCC--CcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCC
Q 014420 289 CGSIRISFSMRTPEKVSKIIIKELGNN--PKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~~~~~L~~~l~~~--~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~ 366 (425)
+-.+.+..... +. +.|++.+... ..+..+.. . .+..+|+.||.+|..+. .+.+.||+++|+||++.+.++
T Consensus 209 ~~~~~~~~g~~-~~---~~l~~~~~~~~l~~~v~~~~--~-~~~~~l~~ad~~v~~~g-~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 209 GIQIVHQTGKN-DL---EKVKNVYQELGIEAIVTFID--E-NMAAAYAAADLVISRAG-ASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred CcEEEEECCcc-hH---HHHHHHHhhCCceEEecCcc--c-CHHHHHHhCCEEEECCC-hhHHHHHHHcCCCEEEeeCCC
Confidence 33454444432 22 2333322221 12323332 2 67899999999999877 567889999999999998765
Q ss_pred CChhHHHH-HHHHHHCCCe
Q 014420 367 CTWKFTDF-HKSLRERGVV 384 (425)
Q Consensus 367 ~~~k~~rf-~~~L~~~G~~ 384 (425)
.... +.. .+.+.+.|.-
T Consensus 281 ~~~~-~~~~~~~i~~~~~G 298 (348)
T TIGR01133 281 AADD-QYYNAKFLEDLGAG 298 (348)
T ss_pred Cccc-hhhHHHHHHHCCCE
Confidence 4433 332 3345554433
No 14
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.64 E-value=1.1e-06 Score=89.97 Aligned_cols=211 Identities=18% Similarity=0.156 Sum_probs=120.9
Q ss_pred HHHHHHhhhhccCCCCcEEEEec-CcchHHHHHHHHHcCCCeEEEEecCCCCCC---------CC-ccEEEeccCCCCCC
Q 014420 129 RQIVTMARETYEKDGPLLVVASG-RDTISIASSIKRLASDNVFVVQIQHPRVHL---------NR-FDLVITPRHDYYPL 197 (425)
Q Consensus 129 ~~~~~~a~~~l~~~~PdLVI~~G-r~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~---------~~-FDlVivP~HD~~~l 197 (425)
.+++....+.+....||+||..| +.+..++..++...+..+.-|+-++-..+. .. .|+.++|.++..
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~~~eE~~r~~i~~la~l~f~~t~~~~-- 156 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEGAIDESIRHAITKLSHLHFVATEEYR-- 156 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCCCchHHHHHHHHHHHhhccCCCHHHH--
Confidence 34445556677888999999999 666666666777777644334444322211 12 267777666542
Q ss_pred Cccccccchhhhhccc-CCCCCCCCcEEEecCCCCcCChHHHH---HHHHhhhhhhCCC-CCCcEEEEEcCCCCCcccCH
Q 014420 198 TPEGQEKIPQFLRRWI-TPCEPPDGHVVLTTGALHQIDSAALR---SAASAWHEEFAPL-PKPLVVVNVGGPTGCCRYGS 272 (425)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~~~~~NVl~T~Galh~v~~~~L~---~a~~~~~~~l~~l-p~p~vavLIGG~s~~~~~~~ 272 (425)
+.+ --.. ...+|++| |+ ++-.+.+. .......+.++.. .++.++|.+=-.+....++.
T Consensus 157 -------------~~L~~eg~-~~~~i~~t-G~--~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~ 219 (365)
T TIGR03568 157 -------------QRVIQMGE-DPDRVFNV-GS--PGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAE 219 (365)
T ss_pred -------------HHHHHcCC-CCCcEEEE-CC--cHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCch
Confidence 111 1011 12467777 87 44443322 1123344455532 23544444432222344555
Q ss_pred HHHHHHHHHHHHHHHhcCeEEEEeCCCCcH--HHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHH
Q 014420 273 DLAKQLTAHLLNVLVSCGSIRISFSMRTPE--KVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLIS 350 (425)
Q Consensus 273 ~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~--~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMls 350 (425)
+....+++.|.++ +..+.++..+-.|. ...+.+++.+...+++.+.+.-+...|..+|..||.+| +||.+++-
T Consensus 220 ~~l~~li~~L~~~---~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vi--tdSSggi~ 294 (365)
T TIGR03568 220 EQIKELLKALDEL---NKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVI--GNSSSGII 294 (365)
T ss_pred HHHHHHHHHHHHh---ccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEE--EcChhHHH
Confidence 5555555555432 22345554433342 23555655443245787777667778899999999988 67777779
Q ss_pred HHHHcCCcEEEEc
Q 014420 351 EACSTGKPVYVVG 363 (425)
Q Consensus 351 EA~atGkPV~v~~ 363 (425)
||++.|+||+.+.
T Consensus 295 EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 295 EAPSFGVPTINIG 307 (365)
T ss_pred hhhhcCCCEEeec
Confidence 9999999999885
No 15
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.48 E-value=4.1e-05 Score=75.32 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHH
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLG 331 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~ 331 (425)
.+++.+.|.+||..-. .+.+.+..+ .+..+.+.....+ + . ..+++.+...+ ...+.+
T Consensus 190 ~~~~~iLv~~gg~~~~---------~~~~~l~~~--~~~~~~v~g~~~~---------~-~-~~~ni~~~~~~-~~~~~~ 246 (318)
T PF13528_consen 190 EDEPKILVYFGGGGPG---------DLIEALKAL--PDYQFIVFGPNAA---------D-P-RPGNIHVRPFS-TPDFAE 246 (318)
T ss_pred CCCCEEEEEeCCCcHH---------HHHHHHHhC--CCCeEEEEcCCcc---------c-c-cCCCEEEeecC-hHHHHH
Confidence 3577899999996544 122332221 1235555533210 1 0 12467665541 256789
Q ss_pred HHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHH-HHHHHHCCCeeecC
Q 014420 332 HLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDF-HKSLRERGVVRPFT 388 (425)
Q Consensus 332 ~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf-~~~L~~~G~~r~f~ 388 (425)
+|+.||++|+.++ -|+++||++.|+|++++|.++. .-|.+ .+.|++.|+...++
T Consensus 247 ~m~~ad~vIs~~G-~~t~~Ea~~~g~P~l~ip~~~~--~EQ~~~a~~l~~~G~~~~~~ 301 (318)
T PF13528_consen 247 LMAAADLVISKGG-YTTISEALALGKPALVIPRPGQ--DEQEYNARKLEELGLGIVLS 301 (318)
T ss_pred HHHhCCEEEECCC-HHHHHHHHHcCCCEEEEeCCCC--chHHHHHHHHHHCCCeEEcc
Confidence 9999999999999 8999999999999999998752 34444 89999999998764
No 16
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.39 E-value=3e-05 Score=76.60 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=105.8
Q ss_pred hhccCCCCcEEEEecCcc-hHHHHHHHHHcCCCeEEEEecCCCCCCCCccEEEeccCCCCCCCccccccchhhhhcccCC
Q 014420 137 ETYEKDGPLLVVASGRDT-ISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITP 215 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t-~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~ 215 (425)
+.+....||+||..+-.. ...-..+|. .+ +.++.+-|..-.....|+++.+--..-. ..|- +
T Consensus 74 ~~l~~~~~d~vV~D~y~~~~~~~~~~k~-~~--~~l~~iDD~~~~~~~~D~vin~~~~~~~-------------~~y~-~ 136 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGLDADWEKLIKE-FG--RKILVIDDLADRPHDCDLLLDQNLGADA-------------SDYQ-G 136 (279)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHHHHH-hC--CeEEEEecCCCCCcCCCEEEeCCCCcCH-------------hHhc-c
Confidence 345566899999998553 333333332 22 3567777776555688999976321100 0010 0
Q ss_pred CCCCCCcEEEecCC-CCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEE
Q 014420 216 CEPPDGHVVLTTGA-LHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRI 294 (425)
Q Consensus 216 ~~~~~~NVl~T~Ga-lh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~i 294 (425)
..|++. .+.+ |. --+++++.... +.. .....+.+.+.|.+||+... .++.... +.+.++. ....+.|
T Consensus 137 ~~~~~~-~~l~-G~~Y~~lr~eF~~~-~~~---~~~~~~~~~iLi~~GG~d~~-~~~~~~l----~~l~~~~-~~~~i~v 204 (279)
T TIGR03590 137 LVPANC-RLLL-GPSYALLREEFYQL-ATA---NKRRKPLRRVLVSFGGADPD-NLTLKLL----SALAESQ-INISITL 204 (279)
T ss_pred cCcCCC-eEEe-cchHHhhhHHHHHh-hHh---hhcccccCeEEEEeCCcCCc-CHHHHHH----HHHhccc-cCceEEE
Confidence 011222 2333 54 11355555322 111 11111246677888876653 3555433 3332211 2234444
Q ss_pred Ee-CCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 295 SF-SMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 295 T~-SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
.+ +--... +.|++.....+++.+..+ .+.+..+|+.||.+|+.++ ++++|+++.|+|+++++..
T Consensus 205 v~G~~~~~~---~~l~~~~~~~~~i~~~~~--~~~m~~lm~~aDl~Is~~G--~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 205 VTGSSNPNL---DELKKFAKEYPNIILFID--VENMAELMNEADLAIGAAG--STSWERCCLGLPSLAICLA 269 (279)
T ss_pred EECCCCcCH---HHHHHHHHhCCCEEEEeC--HHHHHHHHHHCCEEEECCc--hHHHHHHHcCCCEEEEEec
Confidence 33 322222 223232223346777655 6678999999999999887 6799999999999999875
No 17
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.33 E-value=2.9e-05 Score=77.55 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=53.8
Q ss_pred cEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecC
Q 014420 317 KVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 317 ~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~ 388 (425)
++.+.+... +.+.++|+.||.+|+.++ .++++||++.|+|++++|.+.. ..-....+.|++.|+...++
T Consensus 230 ~v~~~~~~~-~~~~~~l~~ad~vI~~~G-~~t~~Ea~~~g~P~l~ip~~~~-~eQ~~na~~l~~~g~~~~l~ 298 (321)
T TIGR00661 230 NVEIRRITT-DNFKELIKNAELVITHGG-FSLISEALSLGKPLIVIPDLGQ-FEQGNNAVKLEDLGCGIALE 298 (321)
T ss_pred CEEEEECCh-HHHHHHHHhCCEEEECCC-hHHHHHHHHcCCCEEEEcCCCc-ccHHHHHHHHHHCCCEEEcC
Confidence 465554422 458999999999999999 7889999999999999998732 12234488999999987764
No 18
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.32 E-value=1.3e-05 Score=80.80 Aligned_cols=199 Identities=20% Similarity=0.203 Sum_probs=109.0
Q ss_pred hhhccCCCCcEEEEecC-cchHHHHHHHHHcCCCeEEEEec------CC---------C-CCCCCccEEEeccCCCCCCC
Q 014420 136 RETYEKDGPLLVVASGR-DTISIASSIKRLASDNVFVVQIQ------HP---------R-VHLNRFDLVITPRHDYYPLT 198 (425)
Q Consensus 136 ~~~l~~~~PdLVI~~Gr-~t~~~~~~lrr~~~~~~~vV~i~------~P---------r-~~~~~FDlVivP~HD~~~l~ 198 (425)
.+.+...+||+|+.-|- .+..++..+++..+.. ++|+. +. | +-....|+++++.++.-
T Consensus 79 ~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ip--v~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~--- 153 (365)
T TIGR00236 79 EELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIP--VGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAK--- 153 (365)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCC--EEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHH---
Confidence 44567788999999995 4445566666666654 46652 10 0 00112377777665531
Q ss_pred ccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH---H-HHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHH
Q 014420 199 PEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR---S-AASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDL 274 (425)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~---~-a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~ 274 (425)
..+.+.-+ +..+|.++ |+ ++.+.... . ....+...++ . ++.++++.|+..... + ..
T Consensus 154 -------~~l~~~G~-----~~~~I~vi-gn--~~~d~~~~~~~~~~~~~~~~~~~-~-~~~~vl~~~hr~~~~--~-k~ 213 (365)
T TIGR00236 154 -------DNLLRENV-----KADSIFVT-GN--TVIDALLTNVEIAYSSPVLSEFG-E-DKRYILLTLHRRENV--G-EP 213 (365)
T ss_pred -------HHHHHcCC-----CcccEEEe-CC--hHHHHHHHHHhhccchhHHHhcC-C-CCCEEEEecCchhhh--h-hH
Confidence 11111111 12356555 76 33221111 1 1223334444 2 334566666643221 1 12
Q ss_pred HHHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHH
Q 014420 275 AKQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEA 352 (425)
Q Consensus 275 a~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA 352 (425)
...+.+.+..+.... -.+.+....+. +..+.+.+.+....++++.+.-+...+..+|+.||.++. +|-+++.||
T Consensus 214 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~--~Sg~~~~EA 289 (365)
T TIGR00236 214 LENIFKAIREIVEEFEDVQIVYPVHLNP--VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILT--DSGGVQEEA 289 (365)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCh--HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEE--CChhHHHHH
Confidence 334555555554432 34555544332 233445555544457888876666678899999998764 667789999
Q ss_pred HHcCCcEEEEc
Q 014420 353 CSTGKPVYVVG 363 (425)
Q Consensus 353 ~atGkPV~v~~ 363 (425)
+++|+||++++
T Consensus 290 ~a~g~PvI~~~ 300 (365)
T TIGR00236 290 PSLGKPVLVLR 300 (365)
T ss_pred HHcCCCEEECC
Confidence 99999999974
No 19
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.26 E-value=4.4e-05 Score=76.12 Aligned_cols=206 Identities=17% Similarity=0.114 Sum_probs=106.5
Q ss_pred HhhhhccCCCCcEEEEecCcc-hHHHHHHHHHcCCCeEEEEec---------CCC-----CCCCCccEEEeccCCCCCCC
Q 014420 134 MARETYEKDGPLLVVASGRDT-ISIASSIKRLASDNVFVVQIQ---------HPR-----VHLNRFDLVITPRHDYYPLT 198 (425)
Q Consensus 134 ~a~~~l~~~~PdLVI~~Gr~t-~~~~~~lrr~~~~~~~vV~i~---------~Pr-----~~~~~FDlVivP~HD~~~l~ 198 (425)
...+.+....||+|+..|... ..++..+++..+. + +|++- .|. .-.+..|+++++.++..
T Consensus 79 ~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~i-P-vv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~--- 153 (363)
T cd03786 79 GLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGI-P-VAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEAR--- 153 (363)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCC-C-EEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHH---
Confidence 334456667899999999553 3445555666665 3 34432 111 01234577777666531
Q ss_pred ccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHH-HHHHH--h-hhhhhCCCCCCcEEEEEcCCCCCcccCHHH
Q 014420 199 PEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAAL-RSAAS--A-WHEEFAPLPKPLVVVNVGGPTGCCRYGSDL 274 (425)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L-~~a~~--~-~~~~l~~lp~p~vavLIGG~s~~~~~~~~~ 274 (425)
..+.+. .. +..+|.++ |+ ++.+... ..... . ....+...+++. +++.+|.-.... ....
T Consensus 154 --------~~l~~~---G~-~~~kI~vi-gn--~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-vlv~~~r~~~~~-~~k~ 216 (363)
T cd03786 154 --------RNLLQE---GE-PPERIFVV-GN--TMIDALLRLLELAKKELILELLGLLPKKY-ILVTLHRVENVD-DGEQ 216 (363)
T ss_pred --------HHHHHc---CC-CcccEEEE-Cc--hHHHHHHHHHHhhccchhhhhcccCCCCE-EEEEeCCccccC-ChHH
Confidence 111111 01 23567666 65 4322111 11111 1 112333333444 455666443322 3333
Q ss_pred HHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCC-CCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHH
Q 014420 275 AKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGN-NPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEAC 353 (425)
Q Consensus 275 a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~-~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~ 353 (425)
...+.+.+..+....-.+.+.....+-++..+.+.+ +.. ..++.+-.....+-+..+|+.||.+|..+. +++.||+
T Consensus 217 ~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg--gi~~Ea~ 293 (363)
T cd03786 217 LEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLE-FLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG--GIQEEAS 293 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHh-hccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc--cHHhhhh
Confidence 444555555443221223333344444555555543 321 245655544334556788999999996654 6788999
Q ss_pred HcCCcEEEEcC
Q 014420 354 STGKPVYVVGA 364 (425)
Q Consensus 354 atGkPV~v~~l 364 (425)
+.|+||+++..
T Consensus 294 ~~g~PvI~~~~ 304 (363)
T cd03786 294 FLGVPVLNLRD 304 (363)
T ss_pred hcCCCEEeeCC
Confidence 99999999874
No 20
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.19 E-value=5.1e-07 Score=81.49 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC-CcEEEecCCCCChHHHHHHH
Q 014420 257 VVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN-PKVHIWDGEEPNPHLGHLAW 335 (425)
Q Consensus 257 vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v~iwd~~g~NPy~~~La~ 335 (425)
++++.||+++.-.++......+ ..+.. ...+..+.+.+-+.-..+.... .... .++.++++ .+-+..+++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~-~~~~~-~~~~~~viv~~G~~~~~~~~~~----~~~~~~~v~~~~~--~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKIL-ELLAE-KHKNIQVIVQTGKNNYEELKIK----VENFNPNVKVFGF--VDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHH-HHHHH-HHHHCCCCCCCTTCECHHHCCC----HCCTTCCCEEECS--SSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHH-HHHhh-cCCCcEEEEEECCCcHHHHHHH----HhccCCcEEEEec--hhhHHHHHHH
Confidence 4678899887654444211111 11111 0012344444444433332222 2222 46777777 5559999999
Q ss_pred cCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHH-HHHHHHCCCeeecCC
Q 014420 336 ADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDF-HKSLRERGVVRPFTG 389 (425)
Q Consensus 336 AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf-~~~L~~~G~~r~f~g 389 (425)
||.+|+.++ .+.++|+++.|+|.+++|.+.....++.. .+.|.+.|....+..
T Consensus 73 aDlvIs~aG-~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~ 126 (167)
T PF04101_consen 73 ADLVISHAG-AGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDE 126 (167)
T ss_dssp HSEEEECS--CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSEC
T ss_pred cCEEEeCCC-ccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCc
Confidence 999999999 88899999999999999998876666666 678889999877643
No 21
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.90 E-value=0.0063 Score=61.90 Aligned_cols=65 Identities=23% Similarity=0.179 Sum_probs=51.6
Q ss_pred CcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHH-HHHHHHCCCeeecC
Q 014420 316 PKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDF-HKSLRERGVVRPFT 388 (425)
Q Consensus 316 ~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf-~~~L~~~G~~r~f~ 388 (425)
.++.+-+. -|+..+|..||.+|.-++ .+.++||++.|+|++++|... + |-+ .+.+++.|+...+.
T Consensus 288 ~~v~~~~~---~p~~~ll~~~d~~I~hgG-~~t~~eal~~GvP~v~~P~~~---d-Q~~~a~~~~~~G~g~~l~ 353 (401)
T cd03784 288 DNVRVVDF---VPHDWLLPRCAAVVHHGG-AGTTAAALRAGVPQLVVPFFG---D-QPFWAARVAELGAGPALD 353 (401)
T ss_pred CceEEeCC---CCHHHHhhhhheeeecCC-chhHHHHHHcCCCEEeeCCCC---C-cHHHHHHHHHCCCCCCCC
Confidence 46666555 378999999999999999 799999999999999998753 2 333 67888999876553
No 22
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.84 E-value=0.0054 Score=58.02 Aligned_cols=200 Identities=20% Similarity=0.186 Sum_probs=105.3
Q ss_pred hccCCCCcEEEEecC-cchHHHHHHHHHcCCCeEEEEecCCC---------------CCCCCccEEEeccCCCCCCCccc
Q 014420 138 TYEKDGPLLVVASGR-DTISIASSIKRLASDNVFVVQIQHPR---------------VHLNRFDLVITPRHDYYPLTPEG 201 (425)
Q Consensus 138 ~l~~~~PdLVI~~Gr-~t~~~~~~lrr~~~~~~~vV~i~~Pr---------------~~~~~FDlVivP~HD~~~l~~~~ 201 (425)
.+....||+|+..+. .+...+...++. + .++++.+.+.. .....+|.++++.++..
T Consensus 76 ~~~~~~~dii~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~------ 147 (353)
T cd03811 76 LLRKEKPDVVISHLTTTPNVLALLAARL-G-TKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVK------ 147 (353)
T ss_pred HHHhcCCCEEEEcCccchhHHHHHHhhc-C-CceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchh------
Confidence 344568999999998 544444444443 3 34454444431 11267899999877642
Q ss_pred cccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHH
Q 014420 202 QEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAH 281 (425)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~ 281 (425)
..+.++.. ....++.+. +|+++.+.......... .+....++.+++.+|.-+.... .+. +.+.
T Consensus 148 -----~~~~~~~~---~~~~~~~vi---~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~g~~~~~k~--~~~---~i~~ 210 (353)
T cd03811 148 -----EDLLKLLG---IPPDKIEVI---YNPIDIEEIRALAEEPL-ELGIPPDGPVILAVGRLSPQKG--FDT---LIRA 210 (353)
T ss_pred -----hhHHHhhc---CCccccEEe---cCCcChhhcCcccchhh-hcCCCCCceEEEEEecchhhcC--hHH---HHHH
Confidence 11122211 012343332 23455433221110000 1223455667777776553322 222 3344
Q ss_pred HHHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcC
Q 014420 282 LLNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISEACSTG 356 (425)
Q Consensus 282 l~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atG 356 (425)
+..+... +-.+.|....--..+..+.+ +.+.....+.+.+. .+....+++.||.+|.+... -..+.||+++|
T Consensus 211 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~-~~~~~~~~v~~~g~--~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G 287 (353)
T cd03811 211 FALLRKEGPDARLVILGDGPLREELEALA-KELGLADRVHFLGF--QSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALG 287 (353)
T ss_pred HHHhhhcCCCceEEEEcCCccHHHHHHHH-HhcCCCccEEEecc--cCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhC
Confidence 4443333 34666665433333444444 33443345544433 34467899999999987643 45689999999
Q ss_pred CcEEEEcCC
Q 014420 357 KPVYVVGAE 365 (425)
Q Consensus 357 kPV~v~~l~ 365 (425)
+||++....
T Consensus 288 ~PvI~~~~~ 296 (353)
T cd03811 288 TPVVATDCP 296 (353)
T ss_pred CCEEEcCCC
Confidence 999886544
No 23
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.80 E-value=0.0017 Score=61.43 Aligned_cols=205 Identities=19% Similarity=0.123 Sum_probs=114.7
Q ss_pred hhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCC--------------------CCCCccEEEeccCCCCC
Q 014420 137 ETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRV--------------------HLNRFDLVITPRHDYYP 196 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~--------------------~~~~FDlVivP~HD~~~ 196 (425)
..+....||+|+..+..........++..+. ++++.+.+... ....+|.++++.....
T Consensus 79 ~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~-~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~- 156 (374)
T cd03801 79 RLLRRERFDVVHAHDWLALLAAALAARLLGI-PLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR- 156 (374)
T ss_pred HHhhhcCCcEEEEechhHHHHHHHHHHhcCC-cEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH-
Confidence 3455668999999999887776655555554 45555555422 2346788888765431
Q ss_pred CCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHH
Q 014420 197 LTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAK 276 (425)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~ 276 (425)
..+.++.. ....++.+. +|.++...................+..+++.+|+.+....+ +
T Consensus 157 ----------~~~~~~~~---~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~--~--- 215 (374)
T cd03801 157 ----------EELRELGG---VPPEKITVI---PNGVDTERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGV--D--- 215 (374)
T ss_pred ----------HHHHhcCC---CCCCcEEEe---cCcccccccCccchHHHhhcCCcCCCeEEEEecchhhhcCH--H---
Confidence 11122221 011344433 22343322210001111223334556677888875533322 2
Q ss_pred HHHHHHHHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHH
Q 014420 277 QLTAHLLNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISE 351 (425)
Q Consensus 277 ~L~~~l~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsE 351 (425)
.+.+.+..+... +-.+.|..+........+.+. .+....++.+...-..+-+..+|..||.++++..+ -+.+.|
T Consensus 216 ~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~-~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~E 294 (374)
T cd03801 216 LLLEALAKLRKEYPDVRLVIVGDGPLREELEALAA-ELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLE 294 (374)
T ss_pred HHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHH-HhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHH
Confidence 233444444443 346777774444333333332 23344567666554456789999999999987653 557999
Q ss_pred HHHcCCcEEEEcCC
Q 014420 352 ACSTGKPVYVVGAE 365 (425)
Q Consensus 352 A~atGkPV~v~~l~ 365 (425)
|+++|+||++...+
T Consensus 295 a~~~g~pvI~~~~~ 308 (374)
T cd03801 295 AMAAGLPVVASDVG 308 (374)
T ss_pred HHHcCCcEEEeCCC
Confidence 99999999987654
No 24
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.68 E-value=0.0047 Score=59.02 Aligned_cols=201 Identities=15% Similarity=0.082 Sum_probs=100.6
Q ss_pred hhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCC-----------------CCCCccEEEeccCCCCCCCc
Q 014420 137 ETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRV-----------------HLNRFDLVITPRHDYYPLTP 199 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~-----------------~~~~FDlVivP~HD~~~l~~ 199 (425)
..+....||+|++..-.+.......++..++.. .|+..+... .....|.+++..++..
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~---- 148 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAARLAGVPP-VIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAA---- 148 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHHhcCCCc-EEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHH----
Confidence 345567899999987666555555555533323 344333321 1245677665554421
Q ss_pred cccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH---HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHH
Q 014420 200 EGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR---SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAK 276 (425)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~---~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~ 276 (425)
..+..+ + . ...++.+. +|.++..... .........+...+...+++.+|+-+....+ +
T Consensus 149 -------~~~~~~--~-~-~~~~~~vi---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~--~--- 209 (365)
T cd03807 149 -------EYHQAI--G-Y-PPKKIVVI---PNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDH--A--- 209 (365)
T ss_pred -------HHHHHc--C-C-ChhheeEe---CCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCH--H---
Confidence 112221 0 0 12343332 2233332211 1111122334433455666677765543322 2
Q ss_pred HHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHH-hhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHH
Q 014420 277 QLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIK-ELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLIS 350 (425)
Q Consensus 277 ~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~-~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMls 350 (425)
.+.+.+..+.... -.+.|..+-- .......+.. .+.-...+.+... .+.+..+|+.||+++.+... -+.+.
T Consensus 210 ~li~a~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~e~~~~~~~ 286 (365)
T cd03807 210 TLLRAAALLLKKFPNARLLLVGDGP-DRANLELLALKELGLEDKVILLGE--RSDVPALLNALDVFVLSSLSEGFPNVLL 286 (365)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCc-chhHHHHHHHHhcCCCceEEEccc--cccHHHHHHhCCEEEeCCccccCCcHHH
Confidence 2334444444433 3555554322 2222233322 3332234544332 34588999999999987654 35799
Q ss_pred HHHHcCCcEEEEcC
Q 014420 351 EACSTGKPVYVVGA 364 (425)
Q Consensus 351 EA~atGkPV~v~~l 364 (425)
||+++|+||++-..
T Consensus 287 Ea~a~g~PvI~~~~ 300 (365)
T cd03807 287 EAMACGLPVVATDV 300 (365)
T ss_pred HHHhcCCCEEEcCC
Confidence 99999999987543
No 25
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.67 E-value=0.0031 Score=61.50 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=68.4
Q ss_pred hhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEec
Q 014420 245 WHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWD 322 (425)
Q Consensus 245 ~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd 322 (425)
+...+...+...+++.+|+-...-.++. +++.+..+... +-.+.|..+-...++..+.+.+ +....++.+..
T Consensus 178 ~~~~~~~~~~~~~~l~~g~~~~~kg~~~-----li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~-~~~~~~v~~~g 251 (360)
T cd04951 178 IRNALGVKNDTFVILAVGRLVEAKDYPN-----LLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKA-LGLSNRVKLLG 251 (360)
T ss_pred HHHHcCcCCCCEEEEEEeeCchhcCcHH-----HHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHh-cCCCCcEEEec
Confidence 4445555556667777775443322222 33444444443 3467777765544555555433 33334565554
Q ss_pred CCCCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcC
Q 014420 323 GEEPNPHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 323 ~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l 364 (425)
. .+.+..+|+.||.++.+..+ -..+.||.++|+||++...
T Consensus 252 ~--~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~ 294 (360)
T cd04951 252 L--RDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDA 294 (360)
T ss_pred c--cccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecC
Confidence 3 34578999999999998763 3457799999999987654
No 26
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.65 E-value=0.0018 Score=63.34 Aligned_cols=203 Identities=17% Similarity=0.077 Sum_probs=105.3
Q ss_pred hhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCC--------CCCCccEEEeccCCCCCCCccccccchhh
Q 014420 137 ETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRV--------HLNRFDLVITPRHDYYPLTPEGQEKIPQF 208 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~--------~~~~FDlVivP~HD~~~l~~~~~~~~~~~ 208 (425)
..+.+..||+|+..+......+.++.+..+. ++ |...|-.. ....+|.+++...... ..
T Consensus 72 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~-~~-i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~-----------~~ 138 (355)
T cd03819 72 RLIREEKVDIVHARSRAPAWSAYLAARRTRP-PF-VTTVHGFYSVNFRYNAIMARGDRVIAVSNFIA-----------DH 138 (355)
T ss_pred HHHHHcCCCEEEECCCchhHHHHHHHHhcCC-CE-EEEeCCchhhHHHHHHHHHhcCEEEEeCHHHH-----------HH
Confidence 3455678999999987777677766666654 33 33233211 1346788887654321 11
Q ss_pred hhcccCCCCCCCCcEEEecCCCCcCChHHHH------HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHH
Q 014420 209 LRRWITPCEPPDGHVVLTTGALHQIDSAALR------SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHL 282 (425)
Q Consensus 209 ~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~------~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l 282 (425)
+..... -...++.+. +|.++.+... .....++..+...+...+++.+|.-+... +.+. +.+.+
T Consensus 139 ~~~~~~---~~~~k~~~i---~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~K--g~~~---li~~~ 207 (355)
T cd03819 139 IRENYG---VDPDRIRVI---PRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWK--GQEV---FIEAL 207 (355)
T ss_pred HHHhcC---CChhhEEEe---cCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeecccccc--CHHH---HHHHH
Confidence 111111 011233322 1233322111 00111334444334445555556544322 2222 23333
Q ss_pred HHHHHh--cCeEEEEeCCCCcHHHHHHHHHh---hCCCCcEEEecCCCCChHHHHHHHcCeEEEcC-C---ChHHHHHHH
Q 014420 283 LNVLVS--CGSIRISFSMRTPEKVSKIIIKE---LGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA-D---SISLISEAC 353 (425)
Q Consensus 283 ~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~---l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa-D---SvSMlsEA~ 353 (425)
..+... .-.+.|..+-...+...+.+.+. +....++.+... .+.+..+|+.||.++++. . .-+.+.||.
T Consensus 208 ~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~ 285 (355)
T cd03819 208 ARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQ 285 (355)
T ss_pred HHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHH
Confidence 333332 23666666544433444333322 222245666555 556889999999999987 3 235789999
Q ss_pred HcCCcEEEEcCC
Q 014420 354 STGKPVYVVGAE 365 (425)
Q Consensus 354 atGkPV~v~~l~ 365 (425)
++|+||++....
T Consensus 286 a~G~PvI~~~~~ 297 (355)
T cd03819 286 AMGRPVIASDHG 297 (355)
T ss_pred hcCCCEEEcCCC
Confidence 999999876544
No 27
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.62 E-value=0.0084 Score=61.85 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=40.1
Q ss_pred hHHHHHHHcCeEEEcC-----CChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecC
Q 014420 328 PHLGHLAWADAFVVTA-----DSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 328 Py~~~La~AD~ivVTa-----DSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~ 388 (425)
-+..+|+.||.+++.+ ...+ +-||+++|+||+.-+.. ..+....+.+.+.|.+.+..
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~-~lEAma~G~PVI~g~~~---~~~~e~~~~~~~~g~~~~~~ 373 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHN-PLEPAAFGVPVISGPHT---FNFKEIFERLLQAGAAIQVE 373 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCC-HHHHHHhCCCEEECCCc---cCHHHHHHHHHHCCCeEEEC
Confidence 5789999999987742 2234 78999999999875432 23555556667778776643
No 28
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.62 E-value=0.0039 Score=63.80 Aligned_cols=198 Identities=17% Similarity=0.085 Sum_probs=105.2
Q ss_pred CCCcEEEEecCc--chHHHHHHHHHcCCCeEEEEecCCC------------------------CCCCCccEEEeccCCCC
Q 014420 142 DGPLLVVASGRD--TISIASSIKRLASDNVFVVQIQHPR------------------------VHLNRFDLVITPRHDYY 195 (425)
Q Consensus 142 ~~PdLVI~~Gr~--t~~~~~~lrr~~~~~~~vV~i~~Pr------------------------~~~~~FDlVivP~HD~~ 195 (425)
..||+|++.... +.+.+.+++++.+. ++++++.|-. .-.+.+|.|++......
T Consensus 105 ~~~Div~~~~p~~~~~~~~~~~~~~~~~-~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~ 183 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPGARLLARLSGA-RTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRFDNVSTISRSMM 183 (412)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHhhCC-CEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhCCEEEecCHHHH
Confidence 579999997543 34566777887776 4566655411 11335788888766431
Q ss_pred CCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHH----HHHhhhhhhCCCCCCcEEEEEcCCCCCcccC
Q 014420 196 PLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRS----AASAWHEEFAPLPKPLVVVNVGGPTGCCRYG 271 (425)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~----a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~ 271 (425)
..++..- ....++.+. +|.++.+.... .+....+.++..+.+.+++.+|.-.... +
T Consensus 184 -----------~~~~~~~----~~~~~i~vi---~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k--g 243 (412)
T PRK10307 184 -----------NKAREKG----VAAEKVIFF---PNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQ--G 243 (412)
T ss_pred -----------HHHHHcC----CCcccEEEE---CCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCcccccc--C
Confidence 0011110 012344333 23444433211 1122344455444445555555322221 2
Q ss_pred HHHHHHHHHHHHHHHHh-cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCCh----
Q 014420 272 SDLAKQLTAHLLNVLVS-CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSI---- 346 (425)
Q Consensus 272 ~~~a~~L~~~l~~l~~~-~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSv---- 346 (425)
-+. |.+.+..+.+. +-.+.|..+-...+++.+.++ .+.- .++.+...-..+-+..+|+.||.++++..+.
T Consensus 244 ~~~---li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~-~~~l-~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~ 318 (412)
T PRK10307 244 LEL---VIDAARRLRDRPDLIFVICGQGGGKARLEKMAQ-CRGL-PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADL 318 (412)
T ss_pred HHH---HHHHHHHhccCCCeEEEEECCChhHHHHHHHHH-HcCC-CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccc
Confidence 222 33443333222 236777766444444444443 2332 3576665444456789999999998876543
Q ss_pred ---HHHHHHHHcCCcEEEEcCC
Q 014420 347 ---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 347 ---SMlsEA~atGkPV~v~~l~ 365 (425)
|.+.||.++|+||+.-...
T Consensus 319 ~~p~kl~eama~G~PVi~s~~~ 340 (412)
T PRK10307 319 VLPSKLTNMLASGRNVVATAEP 340 (412)
T ss_pred cCcHHHHHHHHcCCCEEEEeCC
Confidence 3478999999999877544
No 29
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.55 E-value=0.0041 Score=59.18 Aligned_cols=199 Identities=19% Similarity=0.132 Sum_probs=107.8
Q ss_pred hhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC-------------------CCCCCCccEEEeccCCCCC
Q 014420 136 RETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP-------------------RVHLNRFDLVITPRHDYYP 196 (425)
Q Consensus 136 ~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P-------------------r~~~~~FDlVivP~HD~~~ 196 (425)
...+....||+|++...........+++..+... +++..+. +.....+|.+++..++..
T Consensus 73 ~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~- 150 (359)
T cd03808 73 YRLLRKERPDIVHTHTPKPGILGRLAARLAGVPK-VIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDR- 150 (359)
T ss_pred HHHHHhcCCCEEEEccccchhHHHHHHHHcCCCC-EEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHH-
Confidence 3445667899999987766666666666445433 3443222 112345788888776542
Q ss_pred CCccccccchhhhhc-ccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHH
Q 014420 197 LTPEGQEKIPQFLRR-WITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLA 275 (425)
Q Consensus 197 l~~~~~~~~~~~~~~-~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a 275 (425)
..+.. +.. +...+++.. + +.++.+........ ...++.+++.+|.-..... .+
T Consensus 151 ----------~~~~~~~~~---~~~~~~~~~-~--~~~~~~~~~~~~~~------~~~~~~~i~~~G~~~~~k~--~~-- 204 (359)
T cd03808 151 ----------DLALKLGII---KKKKTVLIP-G--SGVDLDRFSPSPEP------IPEDDPVFLFVARLLKDKG--ID-- 204 (359)
T ss_pred ----------HHHHHhcCC---CcCceEEec-C--CCCChhhcCccccc------cCCCCcEEEEEeccccccC--HH--
Confidence 11222 222 112333322 2 35555432211000 1345667777876544332 22
Q ss_pred HHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHH
Q 014420 276 KQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLIS 350 (425)
Q Consensus 276 ~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMls 350 (425)
.+.+.+..+...+ -.+.|..+--........+...+....++.+.+. .+.+..+|+.||.++.+..+ -+.+.
T Consensus 205 -~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~ 281 (359)
T cd03808 205 -ELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLL 281 (359)
T ss_pred -HHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEecCcccCcchHHH
Confidence 2334444443322 3566655544333333221222333345655544 55688999999999998763 45799
Q ss_pred HHHHcCCcEEEEcCC
Q 014420 351 EACSTGKPVYVVGAE 365 (425)
Q Consensus 351 EA~atGkPV~v~~l~ 365 (425)
||+++|+||++-...
T Consensus 282 Ea~~~G~Pvi~s~~~ 296 (359)
T cd03808 282 EAMAMGRPVIATDVP 296 (359)
T ss_pred HHHHcCCCEEEecCC
Confidence 999999999986544
No 30
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.53 E-value=0.0022 Score=61.66 Aligned_cols=201 Identities=17% Similarity=0.141 Sum_probs=105.6
Q ss_pred cCCCCcEEEEecC-c-chHHHHHHHHHcCCCeEEEEecCC-------------------------CCCCCCccEEEeccC
Q 014420 140 EKDGPLLVVASGR-D-TISIASSIKRLASDNVFVVQIQHP-------------------------RVHLNRFDLVITPRH 192 (425)
Q Consensus 140 ~~~~PdLVI~~Gr-~-t~~~~~~lrr~~~~~~~vV~i~~P-------------------------r~~~~~FDlVivP~H 192 (425)
....||+|+.... . +..++..+++..+. ++++.+.+. +.....+|.|++...
T Consensus 96 ~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~-~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~ 174 (394)
T cd03794 96 RRRRPDVIIATSPPLLIALAALLLARLKGA-PFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVISP 174 (394)
T ss_pred cccCCCEEEEcCChHHHHHHHHHHHHhcCC-CEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEECH
Confidence 3677999999972 2 33445555555554 445555432 011356788888765
Q ss_pred CCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHh-hhhhhCCCCCCcEEEEEcCCCCCcccC
Q 014420 193 DYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASA-WHEEFAPLPKPLVVVNVGGPTGCCRYG 271 (425)
Q Consensus 193 D~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~-~~~~l~~lp~p~vavLIGG~s~~~~~~ 271 (425)
+.. ..+..+ . -...++.+. +|.+++......... ....+.....+.+++.+|+-+.. -+
T Consensus 175 ~~~-----------~~~~~~-~---~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~--k~ 234 (394)
T cd03794 175 GMR-----------EYLVRR-G---VPPEKISVI---PNGVDLELFKPPPADESLRKELGLDDKFVVLYAGNIGRA--QG 234 (394)
T ss_pred HHH-----------HHHHhc-C---CCcCceEEc---CCCCCHHHcCCccchhhhhhccCCCCcEEEEEecCcccc--cC
Confidence 532 111100 0 022454433 235555433211100 01122234455666666654442 23
Q ss_pred HHHHHHHHHHHHHHHHh-cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHH--
Q 014420 272 SDLAKQLTAHLLNVLVS-CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISL-- 348 (425)
Q Consensus 272 ~~~a~~L~~~l~~l~~~-~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSM-- 348 (425)
.+. +.+.+..+.+. .-.+.|..+--..+...+.+.. . ..+++.+...-..+.+..+|..||.++++..+.++
T Consensus 235 ~~~---l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~-~-~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~ 309 (394)
T cd03794 235 LDT---LLEAAALLKDRPDIRFLIVGDGPEKEELKELAKA-L-GLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFE 309 (394)
T ss_pred HHH---HHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHH-c-CCCcEEEeCCCChHHHHHHHHhhCeeEEeccCccccc
Confidence 332 23333333333 3466665543332333333222 2 23567555543445688999999999998776544
Q ss_pred ------HHHHHHcCCcEEEEcCCC
Q 014420 349 ------ISEACSTGKPVYVVGAER 366 (425)
Q Consensus 349 ------lsEA~atGkPV~v~~l~~ 366 (425)
+.||+++|+||++.+...
T Consensus 310 ~~~p~~~~Ea~~~G~pvi~~~~~~ 333 (394)
T cd03794 310 GVSPSKLFEYMAAGKPVLASVDGE 333 (394)
T ss_pred ccCchHHHHHHHCCCcEEEecCCC
Confidence 899999999999887654
No 31
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.49 E-value=0.003 Score=61.18 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHH-----HHHhhCCCCcEEEecC-
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKI-----IIKELGNNPKVHIWDG- 323 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~-----L~~~l~~~~~v~iwd~- 323 (425)
.....+++.+|.-.....+ + .+.+.+..+..++ -.+.|....-........ + +.+.-..++.+..+
T Consensus 182 ~~~~~~i~~~G~~~~~K~~--~---~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i-~~~~~~~~v~~~~~~ 255 (366)
T cd03822 182 LDGRPVLLTFGLLRPYKGL--E---LLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALA-ERLGLADRVIFINRY 255 (366)
T ss_pred CCCCeEEEEEeeccCCCCH--H---HHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHH-HhcCCCCcEEEecCc
Confidence 3455677778865544322 2 2344444444443 355555443222222211 3 33444456766544
Q ss_pred CCCChHHHHHHHcCeEEEcCCCh-----HHHHHHHHcCCcEEEEcCC
Q 014420 324 EEPNPHLGHLAWADAFVVTADSI-----SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 324 ~g~NPy~~~La~AD~ivVTaDSv-----SMlsEA~atGkPV~v~~l~ 365 (425)
-..+-+..+|+.||.++.+.... .++.||+++|+||++.+..
T Consensus 256 ~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~ 302 (366)
T cd03822 256 LPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVG 302 (366)
T ss_pred CCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCC
Confidence 44556889999999999876544 4788999999999887654
No 32
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.48 E-value=0.0076 Score=59.56 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=107.3
Q ss_pred hhhccCCCCcEEEEecCcchHHHHHH-HHHcC--CCeEEEEecC---C-------------CCCCCCccEEEeccCCCCC
Q 014420 136 RETYEKDGPLLVVASGRDTISIASSI-KRLAS--DNVFVVQIQH---P-------------RVHLNRFDLVITPRHDYYP 196 (425)
Q Consensus 136 ~~~l~~~~PdLVI~~Gr~t~~~~~~l-rr~~~--~~~~vV~i~~---P-------------r~~~~~FDlVivP~HD~~~ 196 (425)
...+....||+|............++ ++..+ +.++ |...| . +.....+|.|++..++..
T Consensus 77 ~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~- 154 (371)
T cd04962 77 AEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPV-VTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLR- 154 (371)
T ss_pred HHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcE-EEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHH-
Confidence 33455678999998765543333333 33331 2232 32222 1 122356788888766531
Q ss_pred CCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHH-HHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHH
Q 014420 197 LTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRS-AASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLA 275 (425)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~-a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a 275 (425)
..+.+... ...++.+. +|.++...... ........+...+...+++.+|+-.....++.
T Consensus 155 ----------~~~~~~~~----~~~~i~vi---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~--- 214 (371)
T cd04962 155 ----------QETYELFD----ITKEIEVI---PNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDD--- 214 (371)
T ss_pred ----------HHHHHhcC----CcCCEEEe---cCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEecccccccCHHH---
Confidence 11111211 12344333 23444433211 11223345555566677778887655443333
Q ss_pred HHHHHHHHHHHHh-cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHH
Q 014420 276 KQLTAHLLNVLVS-CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISE 351 (425)
Q Consensus 276 ~~L~~~l~~l~~~-~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsE 351 (425)
+.+.+..+..+ ...+.|...-...+...+.+ +.+.-..++.+... .+.+..+|+.||.++.+.-+ -..+.|
T Consensus 215 --li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~-~~~~~~~~v~~~g~--~~~~~~~~~~~d~~v~ps~~E~~~~~~~E 289 (371)
T cd04962 215 --VIRIFAKVRKEVPARLLLVGDGPERSPAERLA-RELGLQDDVLFLGK--QDHVEELLSIADLFLLPSEKESFGLAALE 289 (371)
T ss_pred --HHHHHHHHHhcCCceEEEEcCCcCHHHHHHHH-HHcCCCceEEEecC--cccHHHHHHhcCEEEeCCCcCCCccHHHH
Confidence 33444443333 34677776654444444444 33433345655543 33488999999999988531 235889
Q ss_pred HHHcCCcEEEEcCC
Q 014420 352 ACSTGKPVYVVGAE 365 (425)
Q Consensus 352 A~atGkPV~v~~l~ 365 (425)
|+++|+||++-...
T Consensus 290 Ama~g~PvI~s~~~ 303 (371)
T cd04962 290 AMACGVPVVASNAG 303 (371)
T ss_pred HHHcCCCEEEeCCC
Confidence 99999999986554
No 33
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.46 E-value=0.0014 Score=67.18 Aligned_cols=154 Identities=19% Similarity=0.145 Sum_probs=111.8
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH--hc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV--SC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPH 329 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~--~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy 329 (425)
+-.++|.+||-.-.+.+ ++...+... .+ ..|.|.+-.=-|++..+.|.+...++|++.|..+ .|-+
T Consensus 219 ~~~Ilvs~GGG~dG~eL--------i~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f--~~~~ 288 (400)
T COG4671 219 GFDILVSVGGGADGAEL--------IETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEF--RNDF 288 (400)
T ss_pred cceEEEecCCChhhHHH--------HHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEh--hhhH
Confidence 45688999995443322 222111111 12 2499999999999999999998877899999988 8999
Q ss_pred HHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHH-HHHHHHCCCeeecCCCC-C------C----CC-C
Q 014420 330 LGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDF-HKSLRERGVVRPFTGSE-D------M----SD-S 396 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf-~~~L~~~G~~r~f~g~~-~------~----~~-~ 396 (425)
..+|+.||.+|+-++ =|.++|-.++|||..|+|--.... -|.. .+.|++.|++-.+.-.. . . ++ +
T Consensus 289 ~~ll~gA~~vVSm~G-YNTvCeILs~~k~aLivPr~~p~e-EQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 289 ESLLAGARLVVSMGG-YNTVCEILSFGKPALIVPRAAPRE-EQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred HHHHHhhheeeeccc-chhhhHHHhCCCceEEeccCCCcH-HHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 999999999999999 999999999999999998644333 3333 88999999997764221 0 0 00 0
Q ss_pred ---CCCCcchHHHHHHHHHHHHHHhc
Q 014420 397 ---WSYPPLNDTAEAASRVHEALAER 419 (425)
Q Consensus 397 ---~~~~PL~et~r~A~~I~~~l~~~ 419 (425)
-++--|+-++.+|+.|.++|..+
T Consensus 367 ~~~~~~L~L~G~~~~a~~l~e~L~~~ 392 (400)
T COG4671 367 SPSKPHLDLEGLEHIARILAELLSTR 392 (400)
T ss_pred CCCccccCchhhHhHHHHHHHHhhhh
Confidence 01112688888998888888764
No 34
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.45 E-value=0.0041 Score=61.35 Aligned_cols=195 Identities=16% Similarity=0.073 Sum_probs=101.7
Q ss_pred hccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEE--EecCC----CCC---------------CCCccEEEeccCCCCC
Q 014420 138 TYEKDGPLLVVASGRDTISIASSIKRLASDNVFVV--QIQHP----RVH---------------LNRFDLVITPRHDYYP 196 (425)
Q Consensus 138 ~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV--~i~~P----r~~---------------~~~FDlVivP~HD~~~ 196 (425)
.++...||+|.+.+......+..+++..+.+ +++ |..+. ... .+.+|.|++..+...
T Consensus 77 ~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~- 154 (367)
T cd05844 77 LLRRHRPDLVHAHFGFDGVYALPLARRLGVP-LVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIR- 154 (367)
T ss_pred HHHhhCCCEEEeccCchHHHHHHHHHHcCCC-EEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHH-
Confidence 3456789999998777777777777777664 444 32221 111 145688888765431
Q ss_pred CCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHH
Q 014420 197 LTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAK 276 (425)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~ 276 (425)
..+..+ + . +..++.+. +|.++.+.... . .....+.+++.+|.-+..-. .+
T Consensus 155 ----------~~~~~~--~-~-~~~~i~vi---~~g~d~~~~~~-------~-~~~~~~~~i~~~G~~~~~K~--~~--- 204 (367)
T cd05844 155 ----------DRLLAL--G-F-PPEKVHVH---PIGVDTAKFTP-------A-TPARRPPRILFVGRFVEKKG--PL--- 204 (367)
T ss_pred ----------HHHHHc--C-C-CHHHeEEe---cCCCCHHhcCC-------C-CCCCCCcEEEEEEeeccccC--hH---
Confidence 111111 0 0 11344333 23455433211 0 11234456666665433221 12
Q ss_pred HHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC---------C
Q 014420 277 QLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD---------S 345 (425)
Q Consensus 277 ~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD---------S 345 (425)
.+.+.+..+.+.+ -.+.|....--.+++ +.+.+.+.-..++.+....+..-+..+|+.||.++.+.- .
T Consensus 205 ~li~a~~~l~~~~~~~~l~ivG~g~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~ 283 (367)
T cd05844 205 LLLEAFARLARRVPEVRLVIIGDGPLLAAL-EALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGL 283 (367)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCchHHHHH-HHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCC
Confidence 2334444444433 356666542111222 223333322345644433333457899999999998653 2
Q ss_pred hHHHHHHHHcCCcEEEEcCC
Q 014420 346 ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 346 vSMlsEA~atGkPV~v~~l~ 365 (425)
-.-+.||+++|+||++-+..
T Consensus 284 ~~~~~EA~a~G~PvI~s~~~ 303 (367)
T cd05844 284 PVVLLEAQASGVPVVATRHG 303 (367)
T ss_pred chHHHHHHHcCCCEEEeCCC
Confidence 45699999999999976654
No 35
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.37 E-value=0.02 Score=56.00 Aligned_cols=202 Identities=15% Similarity=0.094 Sum_probs=107.4
Q ss_pred hccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCC-----------------CCCCccEEEeccCCCCCCCcc
Q 014420 138 TYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRV-----------------HLNRFDLVITPRHDYYPLTPE 200 (425)
Q Consensus 138 ~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~-----------------~~~~FDlVivP~HD~~~l~~~ 200 (425)
.+....||+|++.+.........+.+..+...++++..+... ....+|.+++...+.
T Consensus 75 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~------ 148 (358)
T cd03812 75 LIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEA------ 148 (358)
T ss_pred HHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHH------
Confidence 455678999999988776666666666665444444333211 123457777654432
Q ss_pred ccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH--HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHH
Q 014420 201 GQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR--SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQL 278 (425)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~--~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L 278 (425)
..++-... ...++.+. +|.++.+... .........+...+.+.+++-+|.-...-.++. +
T Consensus 149 ---------~~~~~~~~-~~~~~~vi---~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~-----l 210 (358)
T cd03812 149 ---------GKWLFGKV-KNKKFKVI---PNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEF-----L 210 (358)
T ss_pred ---------HHHHHhCC-CcccEEEE---eccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHH-----H
Confidence 11111110 12333322 2344443221 000111223344566677777887554333332 3
Q ss_pred HHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHHHH
Q 014420 279 TAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISEAC 353 (425)
Q Consensus 279 ~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA~ 353 (425)
.+.+..+.... -.+.|..+---.+...+.+ +.+....++.+... .+....+|+.||.+|.+... -..+.||.
T Consensus 211 i~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~-~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAm 287 (358)
T cd03812 211 IEIFAELLKKNPNAKLLLVGDGELEEEIKKKV-KELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQ 287 (358)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHH-HhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHH
Confidence 34444444432 3666665422122233333 23333345644443 55678999999999998642 34489999
Q ss_pred HcCCcEEEEcCCC
Q 014420 354 STGKPVYVVGAER 366 (425)
Q Consensus 354 atGkPV~v~~l~~ 366 (425)
++|+||+.-...+
T Consensus 288 a~G~PvI~s~~~~ 300 (358)
T cd03812 288 ASGLPCILSDTIT 300 (358)
T ss_pred HhCCCEEEEcCCc
Confidence 9999998876543
No 36
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.047 Score=56.84 Aligned_cols=216 Identities=19% Similarity=0.233 Sum_probs=127.1
Q ss_pred HHHHHHHhhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCCCCCCccEEEeccC-C--------CCCCC
Q 014420 128 VRQIVTMARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRH-D--------YYPLT 198 (425)
Q Consensus 128 ~~~~~~~a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~FDlVivP~H-D--------~~~l~ 198 (425)
...++....+.+...+||+|+==|=.+...+-++...... ..+.|+ -.+.+.||+. .|+. . .+.+.
T Consensus 77 t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~-IpV~Hv---EAGlRt~~~~-~PEE~NR~l~~~~S~~hfa 151 (383)
T COG0381 77 TGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLK-IPVGHV---EAGLRTGDLY-FPEEINRRLTSHLSDLHFA 151 (383)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhC-CceEEE---ecccccCCCC-CcHHHHHHHHHHhhhhhcC
Confidence 4556666677788899999999997766555344333332 224443 4566667766 4442 0 01122
Q ss_pred ccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHH---HH--Hhhhhh-hCCCCCCcEEEEEcCCCCCcccCH
Q 014420 199 PEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRS---AA--SAWHEE-FAPLPKPLVVVNVGGPTGCCRYGS 272 (425)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~---a~--~~~~~~-l~~lp~p~vavLIGG~s~~~~~~~ 272 (425)
|..+. ...+++-.++ ..+|++| |+ ++-...+.. .. ..+... +. .+...++++.+= +.-.++
T Consensus 152 pte~a-r~nLl~EG~~-----~~~Ifvt-Gn--t~iDal~~~~~~~~~~~~~~~~~~~-~~~~~~iLvT~H--RreN~~- 218 (383)
T COG0381 152 PTEIA-RKNLLREGVP-----EKRIFVT-GN--TVIDALLNTRDRVLEDSKILAKGLD-DKDKKYILVTAH--RRENVG- 218 (383)
T ss_pred ChHHH-HHHHHHcCCC-----ccceEEe-CC--hHHHHHHHHHhhhccchhhHHhhhc-cccCcEEEEEcc--hhhccc-
Confidence 21100 0122222232 2578888 88 444333221 11 111111 22 222234444432 333444
Q ss_pred HHHHHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHH
Q 014420 273 DLAKQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLIS 350 (425)
Q Consensus 273 ~~a~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMls 350 (425)
+-.+.+++.+.+++... -.+....-.| +.+.+...+.|++.+++.+.+.-+.-+|..++..| .++=.||-++.-
T Consensus 219 ~~~~~i~~al~~i~~~~~~~~viyp~H~~--~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a--~~iltDSGgiqE 294 (383)
T COG0381 219 EPLEEICEALREIAEEYPDVIVIYPVHPR--PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNA--FLILTDSGGIQE 294 (383)
T ss_pred ccHHHHHHHHHHHHHhCCCceEEEeCCCC--hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhc--eEEEecCCchhh
Confidence 44567778888888754 3555566666 44444445778887889999888888999999988 555579999999
Q ss_pred HHHHcCCcEEEEcCC
Q 014420 351 EACSTGKPVYVVGAE 365 (425)
Q Consensus 351 EA~atGkPV~v~~l~ 365 (425)
||.+.|+||.++...
T Consensus 295 EAp~lg~Pvl~lR~~ 309 (383)
T COG0381 295 EAPSLGKPVLVLRDT 309 (383)
T ss_pred hHHhcCCcEEeeccC
Confidence 999999999999753
No 37
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.23 E-value=0.039 Score=52.15 Aligned_cols=190 Identities=19% Similarity=0.132 Sum_probs=101.8
Q ss_pred hhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC--C------------CCCCCccEEEeccCCCCCCCcccc
Q 014420 137 ETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP--R------------VHLNRFDLVITPRHDYYPLTPEGQ 202 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P--r------------~~~~~FDlVivP~HD~~~l~~~~~ 202 (425)
..+....||+|+..+.........+ ..+..+.++...+. . ...+.+|.++++.+...
T Consensus 77 ~~l~~~~~d~i~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~------- 147 (348)
T cd03820 77 KLLKNNKPDVVISFLTSLLTFLASL--GLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDR------- 147 (348)
T ss_pred HhhcccCCCEEEEcCchHHHHHHHH--hhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHH-------
Confidence 3456688999999987722222222 22221323332222 1 11457899998877641
Q ss_pred ccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHH
Q 014420 203 EKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHL 282 (425)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l 282 (425)
...... ...++.+. +|.++....... ......+++.+|+-+..- +.+. +.+.+
T Consensus 148 -----~~~~~~-----~~~~~~vi---~~~~~~~~~~~~---------~~~~~~~i~~~g~~~~~K--~~~~---l~~~~ 200 (348)
T cd03820 148 -----ALYYKK-----FNKNVVVI---PNPLPFPPEEPS---------SDLKSKRILAVGRLVPQK--GFDL---LIEAW 200 (348)
T ss_pred -----HHhhcc-----CCCCeEEe---cCCcChhhcccc---------CCCCCcEEEEEEeecccc--CHHH---HHHHH
Confidence 000011 12344333 345555432211 134456777888755422 2232 33334
Q ss_pred HHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCC
Q 014420 283 LNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISEACSTGK 357 (425)
Q Consensus 283 ~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGk 357 (425)
..+... +-.+.|..+--......+.+ +.+.....+. +.+. .+-+..+|+.||+++.+..+ -..+.||+++|+
T Consensus 201 ~~l~~~~~~~~l~i~G~~~~~~~~~~~~-~~~~~~~~v~-~~g~-~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~ 277 (348)
T cd03820 201 AKIAKKHPDWKLRIVGDGPEREALEALI-KELGLEDRVI-LLGF-TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGL 277 (348)
T ss_pred HHHHhcCCCeEEEEEeCCCCHHHHHHHH-HHcCCCCeEE-EcCC-cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCC
Confidence 433322 24677777654444444433 3343333453 4332 45688999999999998753 356999999999
Q ss_pred cEEEEcCC
Q 014420 358 PVYVVGAE 365 (425)
Q Consensus 358 PV~v~~l~ 365 (425)
||++.+..
T Consensus 278 Pvi~~~~~ 285 (348)
T cd03820 278 PVISFDCP 285 (348)
T ss_pred CEEEecCC
Confidence 99886543
No 38
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.22 E-value=0.025 Score=55.00 Aligned_cols=197 Identities=20% Similarity=0.197 Sum_probs=104.5
Q ss_pred ccCCCCcEEEEecCcc-hHHHHHHHHHcCCCeEEEEecCCCC-----------CCCCccEEEeccCCCCCCCccccccch
Q 014420 139 YEKDGPLLVVASGRDT-ISIASSIKRLASDNVFVVQIQHPRV-----------HLNRFDLVITPRHDYYPLTPEGQEKIP 206 (425)
Q Consensus 139 l~~~~PdLVI~~Gr~t-~~~~~~lrr~~~~~~~vV~i~~Pr~-----------~~~~FDlVivP~HD~~~l~~~~~~~~~ 206 (425)
++...||+|.+..... ...+...++..+. .+++.+..... ....+|.|+++.+...
T Consensus 75 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~----------- 142 (355)
T cd03799 75 LRRLGIDHIHAHFGTTPATVAMLASRLGGI-PYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNR----------- 142 (355)
T ss_pred HHhcCCCEEEECCCCchHHHHHHHHHhcCC-CEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHH-----------
Confidence 3456899999865433 4455555555543 44443332221 1235789988766531
Q ss_pred hhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHH
Q 014420 207 QFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVL 286 (425)
Q Consensus 207 ~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~ 286 (425)
..+..++. . ...++.+. +|.++.+...... ......+..++.+|..+... +-+ .+.+.+..+.
T Consensus 143 ~~l~~~~~-~--~~~~~~vi---~~~~d~~~~~~~~------~~~~~~~~~i~~~g~~~~~k--~~~---~l~~~~~~l~ 205 (355)
T cd03799 143 QQLIRLLG-C--DPDKIHVV---HCGVDLERFPPRP------PPPPGEPLRILSVGRLVEKK--GLD---YLLEALALLK 205 (355)
T ss_pred HHHHHhcC-C--CcccEEEE---eCCcCHHHcCCcc------ccccCCCeEEEEEeeecccc--CHH---HHHHHHHHHh
Confidence 22333321 0 12343332 2356654432211 01233455666777644322 222 2344554444
Q ss_pred Hh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---------hHHHHHHHHc
Q 014420 287 VS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---------ISLISEACST 355 (425)
Q Consensus 287 ~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---------vSMlsEA~at 355 (425)
+. +-.+.|....-.-++..+.+ +.+...+++.+...-..+-+..+|+.||.++++..+ -+.+-||+++
T Consensus 206 ~~~~~~~l~i~G~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~ 284 (355)
T cd03799 206 DRGIDFRLDIVGDGPLRDELEALI-AELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAM 284 (355)
T ss_pred hcCCCeEEEEEECCccHHHHHHHH-HHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHc
Confidence 43 23555555432223333333 334333456665544455688999999999997554 3568999999
Q ss_pred CCcEEEEcCC
Q 014420 356 GKPVYVVGAE 365 (425)
Q Consensus 356 GkPV~v~~l~ 365 (425)
|+||++....
T Consensus 285 G~Pvi~~~~~ 294 (355)
T cd03799 285 GLPVISTDVS 294 (355)
T ss_pred CCCEEecCCC
Confidence 9999886554
No 39
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.21 E-value=0.069 Score=54.80 Aligned_cols=206 Identities=18% Similarity=0.202 Sum_probs=105.4
Q ss_pred ccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC------CCCCCCccEEEeccCCCCCCCccccccchhhhhcc
Q 014420 139 YEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP------RVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRW 212 (425)
Q Consensus 139 l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P------r~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~ 212 (425)
+.+..||++||.|+..++ .++...|. +.++..-++ ++-.-..|.|++|.-=.- .++.+|
T Consensus 79 ~~~~~pDv~is~~s~~a~---~va~~lgi-P~I~f~D~e~a~~~~~Lt~Pla~~i~~P~~~~~-----------~~~~~~ 143 (335)
T PF04007_consen 79 IKKFKPDVAISFGSPEAA---RVAFGLGI-PSIVFNDTEHAIAQNRLTLPLADVIITPEAIPK-----------EFLKRF 143 (335)
T ss_pred HHhhCCCEEEecCcHHHH---HHHHHhCC-CeEEEecCchhhccceeehhcCCeeECCcccCH-----------HHHHhc
Confidence 345689999998875443 33444565 434444444 344456789998864210 011111
Q ss_pred cCCCCCCCCcEEEec-----CCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH
Q 014420 213 ITPCEPPDGHVVLTT-----GALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV 287 (425)
Q Consensus 213 ~~~~~~~~~NVl~T~-----Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~ 287 (425)
. ...+|.... --+|+..|+. ...++++..+.+.++|=.---+.+|.-... .+...+.+.+.
T Consensus 144 -G----~~~~i~~y~G~~E~ayl~~F~Pd~------~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~---~i~~~ii~~L~ 209 (335)
T PF04007_consen 144 -G----AKNQIRTYNGYKELAYLHPFKPDP------EVLKELGLDDEPYIVVRPEAWKASYDNGKK---SILPEIIEELE 209 (335)
T ss_pred -C----CcCCEEEECCeeeEEeecCCCCCh------hHHHHcCCCCCCEEEEEeccccCeeecCcc---chHHHHHHHHH
Confidence 1 111233222 2345666531 223456655666654333322333433322 23344444454
Q ss_pred hcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCC
Q 014420 288 SCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERC 367 (425)
Q Consensus 288 ~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~ 367 (425)
..+...|-.+|-.++. +.+ +.+ ++.+-+. .=....+|..||.+|.-+ .+|..|||..|.|++-+ .++.
T Consensus 210 ~~~~~vV~ipr~~~~~--~~~-~~~----~~~i~~~--~vd~~~Ll~~a~l~Ig~g--gTMa~EAA~LGtPaIs~-~~g~ 277 (335)
T PF04007_consen 210 KYGRNVVIIPRYEDQR--ELF-EKY----GVIIPPE--PVDGLDLLYYADLVIGGG--GTMAREAALLGTPAISC-FPGK 277 (335)
T ss_pred hhCceEEEecCCcchh--hHH-hcc----CccccCC--CCCHHHHHHhcCEEEeCC--cHHHHHHHHhCCCEEEe-cCCc
Confidence 4555333333333332 222 222 2333322 112358999999988544 59999999999999864 2322
Q ss_pred ChhHHHHHHHHHHCCCeeecC
Q 014420 368 TWKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 368 ~~k~~rf~~~L~~~G~~r~f~ 388 (425)
.-..-+.|.+.|++...+
T Consensus 278 ---~~~vd~~L~~~Gll~~~~ 295 (335)
T PF04007_consen 278 ---LLAVDKYLIEKGLLYHST 295 (335)
T ss_pred ---chhHHHHHHHCCCeEecC
Confidence 212236689999875543
No 40
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.14 E-value=0.0014 Score=67.03 Aligned_cols=199 Identities=19% Similarity=0.181 Sum_probs=104.7
Q ss_pred hhhhccCCCCcEEEEecCcchHHHHHH-HHHcCCCeEEEEecC------CC----------CCCCCccEEEeccCCCCCC
Q 014420 135 ARETYEKDGPLLVVASGRDTISIASSI-KRLASDNVFVVQIQH------PR----------VHLNRFDLVITPRHDYYPL 197 (425)
Q Consensus 135 a~~~l~~~~PdLVI~~Gr~t~~~~~~l-rr~~~~~~~vV~i~~------Pr----------~~~~~FDlVivP~HD~~~l 197 (425)
-.+.+...+||+||--|=+....+.++ +...+ ..++|+.- .. .-....|+-++|..+..
T Consensus 59 ~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~--ipv~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~-- 134 (346)
T PF02350_consen 59 LADVLEREKPDAVLVLGDRNEALAAALAAFYLN--IPVAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEAR-- 134 (346)
T ss_dssp HHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT---EEEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHH--
T ss_pred HHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhC--CCEEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHH--
Confidence 345566779999999998875555444 44444 34788741 11 01122356677655431
Q ss_pred CccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhh-----h-CCCCCCcEEEEEcCCCCCcccC
Q 014420 198 TPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEE-----F-APLPKPLVVVNVGGPTGCCRYG 271 (425)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~-----l-~~lp~p~vavLIGG~s~~~~~~ 271 (425)
-++++--+ +..+|++| |++ +-. .+........+. + ...+++.+. +.- .......+
T Consensus 135 --------~~L~~~G~-----~~~rI~~v-G~~--~~D-~l~~~~~~~~~~~~~~~i~~~~~~~~iL-vt~-H~~t~~~~ 195 (346)
T PF02350_consen 135 --------ERLLQEGE-----PPERIFVV-GNP--GID-ALLQNKEEIEEKYKNSGILQDAPKPYIL-VTL-HPVTNEDN 195 (346)
T ss_dssp --------HHHHHTT-------GGGEEE----H--HHH-HHHHHHHTTCC-HHHHHHHHCTTSEEEE-EE--S-CCCCTH
T ss_pred --------HHHHhcCC-----CCCeEEEE-ChH--HHH-HHHHhHHHHhhhhhhHHHHhccCCCEEE-EEe-CcchhcCC
Confidence 11112111 12578877 984 222 233333333222 2 224455533 333 22222222
Q ss_pred HHHHHHHHHHHHHHHHh-cCeEEEEeC--CCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHH
Q 014420 272 SDLAKQLTAHLLNVLVS-CGSIRISFS--MRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISL 348 (425)
Q Consensus 272 ~~~a~~L~~~l~~l~~~-~gsl~iT~S--RRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSM 348 (425)
++...++...|..+.+. +..+.++.. .+|...+.+.+.+. +++.+...-+...|..+|..|+++| +||.+.
T Consensus 196 ~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~l~ll~~a~~vv--gdSsGI 269 (346)
T PF02350_consen 196 PERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEYLSLLKNADLVV--GDSSGI 269 (346)
T ss_dssp H--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHHHHHHHHESEEE--ESSHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHHHHHHhcceEEE--EcCccH
Confidence 55556676777777765 456777766 78877776666543 2687776666677899999999886 577766
Q ss_pred HHHHHHcCCcEEEE
Q 014420 349 ISEACSTGKPVYVV 362 (425)
Q Consensus 349 lsEA~atGkPV~v~ 362 (425)
.-||++.|+||+.+
T Consensus 270 ~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 270 QEEAPSLGKPVVNI 283 (346)
T ss_dssp HHHGGGGT--EEEC
T ss_pred HHHHHHhCCeEEEe
Confidence 66999999999999
No 41
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.10 E-value=0.03 Score=56.05 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=101.5
Q ss_pred CCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecC--CC--------------------CCCCCccEEEeccCCCCCCC
Q 014420 141 KDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQH--PR--------------------VHLNRFDLVITPRHDYYPLT 198 (425)
Q Consensus 141 ~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~--Pr--------------------~~~~~FDlVivP~HD~~~l~ 198 (425)
...||+|.+.+..+...+..+++..+. ++++.+.+ |- .....+|.|+++.....
T Consensus 81 ~~~~divh~~~~~~~~~~~~~~~~~~~-p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~--- 156 (388)
T TIGR02149 81 PVDADVVHSHTWYTFLAGHLAKKLYDK-PLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGMR--- 156 (388)
T ss_pred CCCCCeEeecchhhhhHHHHHHHhcCC-CEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHHH---
Confidence 356999999887776666666666554 33433322 21 11345688888765321
Q ss_pred ccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH-HHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHH
Q 014420 199 PEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR-SAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQ 277 (425)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~-~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~ 277 (425)
..+.+++++- ...++.++ +|.++.+... .....+..+++..+...+++.+|--...-.+ + .
T Consensus 157 --------~~~~~~~~~~--~~~~i~vi---~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~--~---~ 218 (388)
T TIGR02149 157 --------EDILKYYPDL--DPEKVHVI---YNGIDTKEYKPDDGNVVLDRYGIDRSRPYILFVGRITRQKGV--P---H 218 (388)
T ss_pred --------HHHHHHcCCC--CcceEEEe---cCCCChhhcCCCchHHHHHHhCCCCCceEEEEEcccccccCH--H---H
Confidence 1112222110 12344333 2345543321 1122344555544445566677654432222 2 2
Q ss_pred HHHHHHHHHHhcCeEEEEe-CCCCcHHHHHHHHHh---hCC-CCcEEEecC-CCCChHHHHHHHcCeEEEcCCC---hHH
Q 014420 278 LTAHLLNVLVSCGSIRISF-SMRTPEKVSKIIIKE---LGN-NPKVHIWDG-EEPNPHLGHLAWADAFVVTADS---ISL 348 (425)
Q Consensus 278 L~~~l~~l~~~~gsl~iT~-SRRTP~~~~~~L~~~---l~~-~~~v~iwd~-~g~NPy~~~La~AD~ivVTaDS---vSM 348 (425)
|.+.+..+ .....+.|.. +...++ ..+.+++. +.. ..++.+..+ -...-+..+|+.||+++++.-+ -..
T Consensus 219 li~a~~~l-~~~~~l~i~g~g~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~ 296 (388)
T TIGR02149 219 LLDAVHYI-PKDVQVVLCAGAPDTPE-VAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIV 296 (388)
T ss_pred HHHHHHHH-hhcCcEEEEeCCCCcHH-HHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChH
Confidence 33333333 2344566543 344432 33334332 222 123433333 2233478999999999998532 234
Q ss_pred HHHHHHcCCcEEEEcCC
Q 014420 349 ISEACSTGKPVYVVGAE 365 (425)
Q Consensus 349 lsEA~atGkPV~v~~l~ 365 (425)
+.||.++|+||++-...
T Consensus 297 ~lEA~a~G~PvI~s~~~ 313 (388)
T TIGR02149 297 NLEAMACGTPVVASATG 313 (388)
T ss_pred HHHHHHcCCCEEEeCCC
Confidence 58999999999886543
No 42
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.07 E-value=0.037 Score=53.23 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=64.9
Q ss_pred hhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCC
Q 014420 248 EFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEE 325 (425)
Q Consensus 248 ~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g 325 (425)
.+....++.+++.+|.-.... +.+. +.+.+..+... +-.+.+..+--.-+...+.+ +.+....++.+...-.
T Consensus 195 ~~~~~~~~~~i~~~G~~~~~k--~~~~---l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~-~~~~~~~~v~~~g~~~ 268 (374)
T cd03817 195 KLGIPEDEPVLLYVGRLAKEK--NIDF---LIRAFARLLKEEPDVKLVIVGDGPEREELEELA-RELGLADRVIFTGFVP 268 (374)
T ss_pred hcCCCCCCeEEEEEeeeeccc--CHHH---HHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHH-HHcCCCCcEEEeccCC
Confidence 344445566666676533322 2222 33444443333 24566665432222333332 3344335676655444
Q ss_pred CChHHHHHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcCC
Q 014420 326 PNPHLGHLAWADAFVVTADSI---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l~ 365 (425)
.+-+..+|+.||.++.+..+. ..+.||.++|+||++....
T Consensus 269 ~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~ 311 (374)
T cd03817 269 REELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP 311 (374)
T ss_pred hHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence 456889999999999988754 3488999999999987644
No 43
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.07 E-value=0.026 Score=55.19 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=103.7
Q ss_pred cCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC-------------------CCCCCccEEEeccCCCCCCCcc
Q 014420 140 EKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR-------------------VHLNRFDLVITPRHDYYPLTPE 200 (425)
Q Consensus 140 ~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr-------------------~~~~~FDlVivP~HD~~~l~~~ 200 (425)
..+.+|++...+..+...+..+++. +. ++++.+..-. ......|.|++..+...
T Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~----- 155 (363)
T cd04955 83 VKRDIDHVHALGPAIAPFLPLLRLK-GK-KVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIK----- 155 (363)
T ss_pred ccCCeEEEEecCccHHHHHHHHHhc-CC-CEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHH-----
Confidence 4578999999888775555555543 44 4444432210 12345688888665421
Q ss_pred ccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHH
Q 014420 201 GQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTA 280 (425)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~ 280 (425)
..++..+. . ++.++. |.++...... ...+...+...++ ..++.+|.-...-.++. +.+
T Consensus 156 ------~~~~~~~~----~-~~~~i~----ngv~~~~~~~-~~~~~~~~~~~~~-~~i~~~G~~~~~Kg~~~-----li~ 213 (363)
T cd04955 156 ------EYLKEKYG----R-DSTYIP----YGADHVVSSE-EDEILKKYGLEPG-RYYLLVGRIVPENNIDD-----LIE 213 (363)
T ss_pred ------HHHHHhcC----C-CCeeeC----CCcChhhcch-hhhhHHhcCCCCC-cEEEEEecccccCCHHH-----HHH
Confidence 11111111 1 122222 2333322111 1122333333333 34567887554332221 233
Q ss_pred HHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC----hHHHHHHHHcC
Q 014420 281 HLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS----ISLISEACSTG 356 (425)
Q Consensus 281 ~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS----vSMlsEA~atG 356 (425)
.+..+. ..-.+.|..+---..+..+.+.+.+...+++.+-..-..+.+..+|..||.++.+..+ -..+.||+++|
T Consensus 214 a~~~l~-~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G 292 (363)
T cd04955 214 AFSKSN-SGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYG 292 (363)
T ss_pred HHHhhc-cCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcC
Confidence 333322 2456777666433345556665444444566544433445678999999999998765 13599999999
Q ss_pred CcEEEEcCC
Q 014420 357 KPVYVVGAE 365 (425)
Q Consensus 357 kPV~v~~l~ 365 (425)
+||++-...
T Consensus 293 ~PvI~s~~~ 301 (363)
T cd04955 293 CPVLASDNP 301 (363)
T ss_pred CCEEEecCC
Confidence 999987544
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.06 E-value=0.034 Score=55.26 Aligned_cols=198 Identities=19% Similarity=0.092 Sum_probs=102.3
Q ss_pred CCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC-------C-----------------CCCCccEEEeccCCCCCCC
Q 014420 143 GPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR-------V-----------------HLNRFDLVITPRHDYYPLT 198 (425)
Q Consensus 143 ~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr-------~-----------------~~~~FDlVivP~HD~~~l~ 198 (425)
.||+|++.+..+..++..+++..+.+. |+..+.. . -.+.+|.|+++.++..
T Consensus 101 ~~Div~~~~~~~~~~~~~~~~~~~~~~--i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~--- 175 (398)
T cd03800 101 RPDLIHAHYWDSGLVALLLARRLGIPL--VHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEA--- 175 (398)
T ss_pred CccEEEEecCccchHHHHHHhhcCCce--EEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHH---
Confidence 899999988777777777777776542 3322210 0 1235788888766531
Q ss_pred ccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHH--HHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHH
Q 014420 199 PEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRS--AASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAK 276 (425)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~--a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~ 276 (425)
..+...+.. ...|+.+. +|.++.+.... ........+...+...+++.+|.-.... +.+.
T Consensus 176 -------~~~~~~~~~----~~~~~~vi---~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~k--~~~~-- 237 (398)
T cd03800 176 -------EELYSLYGA----YPRRIRVV---PPGVDLERFTPYGRAEARRARLLRDPDKPRILAVGRLDPRK--GIDT-- 237 (398)
T ss_pred -------HHHHHHccc----cccccEEE---CCCCCccceecccchhhHHHhhccCCCCcEEEEEccccccc--CHHH--
Confidence 011111111 22333332 12233221110 0001122233334455666666543322 2222
Q ss_pred HHHHHHHHHHHh--cCeEEEEeCCCCcH-----HHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---h
Q 014420 277 QLTAHLLNVLVS--CGSIRISFSMRTPE-----KVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---I 346 (425)
Q Consensus 277 ~L~~~l~~l~~~--~gsl~iT~SRRTP~-----~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---v 346 (425)
+.+.+..+... .-.+.|..+-.... ...+.+.+.+.-..++.+...-+.+-+..+|+.||.+++++-+ -
T Consensus 238 -ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~ 316 (398)
T cd03800 238 -LIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFG 316 (398)
T ss_pred -HHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccC
Confidence 33444444433 24666666543221 1123344444433466655554445678999999999987543 3
Q ss_pred HHHHHHHHcCCcEEEEcC
Q 014420 347 SLISEACSTGKPVYVVGA 364 (425)
Q Consensus 347 SMlsEA~atGkPV~v~~l 364 (425)
..+.||.++|+||++...
T Consensus 317 ~~l~Ea~a~G~Pvi~s~~ 334 (398)
T cd03800 317 LTALEAMACGLPVVATAV 334 (398)
T ss_pred cHHHHHHhcCCCEEECCC
Confidence 469999999999976543
No 45
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.00 E-value=0.041 Score=52.37 Aligned_cols=202 Identities=22% Similarity=0.161 Sum_probs=103.6
Q ss_pred hhcc--CCCCcEEEEecCcch-HHHHHHHHHcCCCeEEEEecCCCC---------------CCCCccEEEeccCCCCCCC
Q 014420 137 ETYE--KDGPLLVVASGRDTI-SIASSIKRLASDNVFVVQIQHPRV---------------HLNRFDLVITPRHDYYPLT 198 (425)
Q Consensus 137 ~~l~--~~~PdLVI~~Gr~t~-~~~~~lrr~~~~~~~vV~i~~Pr~---------------~~~~FDlVivP~HD~~~l~ 198 (425)
..+. ...||+|+....... .....+.+..+. +.++.+.++.. ....+|.|++......
T Consensus 85 ~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~-~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~--- 160 (377)
T cd03798 85 KLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGI-PLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALA--- 160 (377)
T ss_pred HHHhcccCCCCEEEEeccchHHHHHHHHHHhcCC-CEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHH---
Confidence 3455 778999999865543 344455555554 44444444311 2345788888765431
Q ss_pred ccccccchhhhhcc-cCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHH
Q 014420 199 PEGQEKIPQFLRRW-ITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQ 277 (425)
Q Consensus 199 ~~~~~~~~~~~~~~-~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~ 277 (425)
..+.+. ++ ..++.+. . |.++...+......-.+.+.....+.+++.+|.-.... +.+.
T Consensus 161 --------~~~~~~~~~-----~~~~~~i-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k--~~~~--- 219 (377)
T cd03798 161 --------DELKALGID-----PEKVTVI-P--NGVDTERFSPADRAEARKLGLPEDKKVILFVGRLVPRK--GIDY--- 219 (377)
T ss_pred --------HHHHHhcCC-----CCceEEc-C--CCcCcccCCCcchHHHHhccCCCCceEEEEeccCcccc--CHHH---
Confidence 112221 12 2454443 1 23333222111100002233334556777777655422 2222
Q ss_pred HHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC---ChHHHHHH
Q 014420 278 LTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD---SISLISEA 352 (425)
Q Consensus 278 L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD---SvSMlsEA 352 (425)
+.+.+..+...+ -.+.|...--......+.+ +.+....++.+...-..+-+..+|..||.++.+.- .-+.+.||
T Consensus 220 li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea 298 (377)
T cd03798 220 LIEALARLLKKRPDVHLVIVGDGPLREALEALA-AELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEA 298 (377)
T ss_pred HHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHH-HhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHH
Confidence 334444443332 3455554332222233333 32333345655544334457899999999997653 24568999
Q ss_pred HHcCCcEEEEcC
Q 014420 353 CSTGKPVYVVGA 364 (425)
Q Consensus 353 ~atGkPV~v~~l 364 (425)
+++|+||++-+.
T Consensus 299 ~~~G~pvI~~~~ 310 (377)
T cd03798 299 MACGLPVVATDV 310 (377)
T ss_pred HhcCCCEEEecC
Confidence 999999987654
No 46
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.95 E-value=0.015 Score=59.86 Aligned_cols=208 Identities=13% Similarity=0.083 Sum_probs=108.8
Q ss_pred CCCchhhhh--hHHHHHHHhhhhccCCCCcEEEEe--cCcchHHHHHHHHHcCCCeEEEEecCCC---C-------CCCC
Q 014420 118 VGLSSVLEA--DVRQIVTMARETYEKDGPLLVVAS--GRDTISIASSIKRLASDNVFVVQIQHPR---V-------HLNR 183 (425)
Q Consensus 118 ~g~~~~~~~--~~~~~~~~a~~~l~~~~PdLVI~~--Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr---~-------~~~~ 183 (425)
.|+..++.. ..+++.+...+.. ..||++|.. -+....++..+|+...+ ..+||---|. | ..+.
T Consensus 51 ~G~~evl~~~~~~~~~~~~~~~~~--~~pd~~i~iD~p~Fnl~lak~~k~~~~~-i~viyyi~PqvWAWr~~R~~~i~k~ 127 (347)
T PRK14089 51 MGFVDVLPKLFFAKKAIKEMVELA--KQADKVLLMDSSSFNIPLAKKIKKAYPK-KEIIYYILPQVWAWKKGRAKILEKY 127 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcCCC-CCEEEEECccceeeCcchHHHHHHH
Confidence 355555442 2344444444443 579999985 55677888888876533 3367766783 1 3345
Q ss_pred ccEEEecc--CCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEE
Q 014420 184 FDLVITPR--HDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNV 261 (425)
Q Consensus 184 FDlVivP~--HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLI 261 (425)
.|.+++-. .-. |+ +-++..+ |. |+..+ +...+ ..+ +...++.++
T Consensus 128 ~d~vl~ifPFE~~-----------------~y------g~~~~~V-Gh--Pl~d~-~~~~~----~~~---~~~~~I~ll 173 (347)
T PRK14089 128 CDFLASILPFEVQ-----------------FY------QSKATYV-GH--PLLDE-IKEFK----KDL---DKEGTIAFM 173 (347)
T ss_pred HhhhhccCCCCHH-----------------Hh------CCCCEEE-CC--cHHHh-hhhhh----hhc---CCCCEEEEE
Confidence 57666633 221 11 2334333 76 45443 22111 112 222467899
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEE
Q 014420 262 GGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVV 341 (425)
Q Consensus 262 GG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivV 341 (425)
+||.++-.. . ..-.+.+.+..+.++.-.+.++ +-.+- +.+++.+.....+.+.+ ...+.|++||++++
T Consensus 174 PGSR~~Ei~-~-llP~~~~aa~~L~~~~~~~~i~-~a~~~----~~i~~~~~~~~~~~~~~-----~~~~~m~~aDlal~ 241 (347)
T PRK14089 174 PGSRKSEIK-R-LMPIFKELAKKLEGKEKILVVP-SFFKG----KDLKEIYGDISEFEISY-----DTHKALLEAEFAFI 241 (347)
T ss_pred CCCCHHHHH-H-HHHHHHHHHHHHhhcCcEEEEe-CCCcH----HHHHHHHhcCCCcEEec-----cHHHHHHhhhHHHh
Confidence 999885433 1 1111112222222222233333 33332 33333332212233332 23579999999999
Q ss_pred cCCChHHHHHHHHcCCcEEEEcCCCCChhHHHH-HHHHH
Q 014420 342 TADSISLISEACSTGKPVYVVGAERCTWKFTDF-HKSLR 379 (425)
Q Consensus 342 TaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf-~~~L~ 379 (425)
+++.+++ |++..|+|.+|. ...+.++.+ .+.|.
T Consensus 242 ~SGT~TL--E~al~g~P~Vv~---Yk~~~lty~iak~lv 275 (347)
T PRK14089 242 CSGTATL--EAALIGTPFVLA---YKAKAIDYFIAKMFV 275 (347)
T ss_pred cCcHHHH--HHHHhCCCEEEE---EeCCHHHHHHHHHHH
Confidence 9996665 999999999883 233455555 45555
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.91 E-value=0.051 Score=52.17 Aligned_cols=196 Identities=17% Similarity=0.067 Sum_probs=98.2
Q ss_pred hhhccCCCCcEEEEecCcchHHHH-HHHHHcCCCeEEEEecCC-------CCCCCCccEEEeccCCCCCCCccccccchh
Q 014420 136 RETYEKDGPLLVVASGRDTISIAS-SIKRLASDNVFVVQIQHP-------RVHLNRFDLVITPRHDYYPLTPEGQEKIPQ 207 (425)
Q Consensus 136 ~~~l~~~~PdLVI~~Gr~t~~~~~-~lrr~~~~~~~vV~i~~P-------r~~~~~FDlVivP~HD~~~l~~~~~~~~~~ 207 (425)
...+....||+|+........... ...+..+. ++++.+.+. .......|.++++.+... .
T Consensus 89 ~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~-~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~-----------~ 156 (359)
T cd03823 89 ARLLEDFRPDVVHFHHLQGLGVSILRAARDRGI-PIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLL-----------D 156 (359)
T ss_pred HHHHHHcCCCEEEECCccchHHHHHHHHHhcCC-CEEEEEeeeeeecchhhhhccCCCEEEEeCHHHH-----------H
Confidence 344556789999887654433332 23334443 334433322 122233388888765431 1
Q ss_pred hhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH
Q 014420 208 FLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV 287 (425)
Q Consensus 208 ~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~ 287 (425)
.+..+.. ...++.+. +|.++........ . .....+.+++.+|.-+..-.+ +. +.+.+..+..
T Consensus 157 ~~~~~~~----~~~~~~vi---~n~~~~~~~~~~~-----~-~~~~~~~~i~~~G~~~~~k~~--~~---li~~~~~l~~ 218 (359)
T cd03823 157 RYVANGL----FAEKISVI---RNGIDLDRAKRPR-----R-APPGGRLRFGFIGQLTPHKGV--DL---LLEAFKRLPR 218 (359)
T ss_pred HHHHcCC----CccceEEe---cCCcChhhccccc-----c-CCCCCceEEEEEecCccccCH--HH---HHHHHHHHHh
Confidence 1122211 11343333 2355554332110 0 122345566677765443322 22 2333333332
Q ss_pred hcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcC----CChHHHHHHHHcCCcEEEEc
Q 014420 288 SCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA----DSISLISEACSTGKPVYVVG 363 (425)
Q Consensus 288 ~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa----DSvSMlsEA~atGkPV~v~~ 363 (425)
.+-.+.+..+--......... ....++.+...-..+.+..+|+.||.++.+. ..-..+.||+++|+||++-.
T Consensus 219 ~~~~l~i~G~~~~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~ 294 (359)
T cd03823 219 GDIELVIVGNGLELEEESYEL----EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASD 294 (359)
T ss_pred cCcEEEEEcCchhhhHHHHhh----cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECC
Confidence 345666665433222221111 2224566655544567889999999999864 23345899999999998865
Q ss_pred CC
Q 014420 364 AE 365 (425)
Q Consensus 364 l~ 365 (425)
.+
T Consensus 295 ~~ 296 (359)
T cd03823 295 IG 296 (359)
T ss_pred CC
Confidence 43
No 48
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.91 E-value=0.046 Score=55.84 Aligned_cols=197 Identities=15% Similarity=0.051 Sum_probs=102.3
Q ss_pred hhccCCCCcEEEEecCcchH--HHHHHHHHcCCCeEEEEecCC----------------CCCCCCccEEEeccCCCCCCC
Q 014420 137 ETYEKDGPLLVVASGRDTIS--IASSIKRLASDNVFVVQIQHP----------------RVHLNRFDLVITPRHDYYPLT 198 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t~~--~~~~lrr~~~~~~~vV~i~~P----------------r~~~~~FDlVivP~HD~~~l~ 198 (425)
..+.+..||+|-+.+..... .+..+++..+.++ |...|- +...++.|.|++..+....
T Consensus 82 ~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~--v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-- 157 (398)
T cd03796 82 NILIRERITIVHGHQAFSALAHEALLHARTMGLKT--VFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKE-- 157 (398)
T ss_pred HHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcE--EEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhh--
Confidence 34556789999999876532 3555566666532 322211 0113567888887665310
Q ss_pred ccccccchhhh-hcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHH
Q 014420 199 PEGQEKIPQFL-RRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQ 277 (425)
Q Consensus 199 ~~~~~~~~~~~-~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~ 277 (425)
.+. +..+ ...++.+. +|.++.+........ ..+...+++.+|.-...-.++.
T Consensus 158 --------~~~~~~~~-----~~~k~~vi---~ngvd~~~f~~~~~~------~~~~~~~i~~~grl~~~Kg~~~----- 210 (398)
T cd03796 158 --------NTVLRASL-----DPERVSVI---PNAVDSSDFTPDPSK------RDNDKITIVVISRLVYRKGIDL----- 210 (398)
T ss_pred --------HHHHHhCC-----ChhhEEEE---cCccCHHHcCCCccc------CCCCceEEEEEeccchhcCHHH-----
Confidence 000 1111 12344333 345665443211100 1234567777776433322222
Q ss_pred HHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHHH
Q 014420 278 LTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISEA 352 (425)
Q Consensus 278 L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA 352 (425)
|.+.+..+.+.. -.+.|...--..++..+.+ +.+.-..++.+-..-..+.+..+|+.||.++.+..+ -.-+.||
T Consensus 211 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~-~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EA 289 (398)
T cd03796 211 LVGIIPEICKKHPNVRFIIGGDGPKRILLEEMR-EKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEA 289 (398)
T ss_pred HHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHH-HHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHH
Confidence 334444433332 3455544322223333333 334332346444433446789999999999998764 2357799
Q ss_pred HHcCCcEEEEcCC
Q 014420 353 CSTGKPVYVVGAE 365 (425)
Q Consensus 353 ~atGkPV~v~~l~ 365 (425)
.++|+||++-...
T Consensus 290 ma~G~PVI~s~~g 302 (398)
T cd03796 290 ASCGLLVVSTRVG 302 (398)
T ss_pred HHcCCCEEECCCC
Confidence 9999999876544
No 49
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.87 E-value=0.18 Score=51.44 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=36.7
Q ss_pred CcEEEecCCCCChHHHHHHHcCeEEEcCCChH---HHHHHHHcCCcEEEEcCC
Q 014420 316 PKVHIWDGEEPNPHLGHLAWADAFVVTADSIS---LISEACSTGKPVYVVGAE 365 (425)
Q Consensus 316 ~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvS---MlsEA~atGkPV~v~~l~ 365 (425)
.++.+...-..+-+..+|+.||+++.+...-. -+.||+++|+||+.-...
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~ 333 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA 333 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCC
Confidence 45655544344567899999999998776432 378999999999876543
No 50
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.83 E-value=0.022 Score=59.88 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=46.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHH---HHHHHHcCCcEEEEc
Q 014420 290 GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISL---ISEACSTGKPVYVVG 363 (425)
Q Consensus 290 gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSM---lsEA~atGkPV~v~~ 363 (425)
-.+.|... .|. .+.|++.... .++.+...-..+-+..+|+.||.+|.+..+-++ +.||+++|+||+.-.
T Consensus 291 ~~l~ivG~--G~~--~~~l~~~~~~-~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~ 362 (465)
T PLN02871 291 ARLAFVGD--GPY--REELEKMFAG-TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAAR 362 (465)
T ss_pred cEEEEEeC--ChH--HHHHHHHhcc-CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcC
Confidence 46666653 332 3455554433 356444443345688999999999999876554 779999999998754
No 51
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=96.82 E-value=0.046 Score=55.80 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=58.3
Q ss_pred cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCC
Q 014420 289 CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCT 368 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~ 368 (425)
+..+.+++.+....+ .+.+ +. .++.+.+. =|+..+|+.||++|+-++ .+++.||++.|+|++++|....
T Consensus 254 ~~~~i~~~g~~~~~~---~~~~-~~--~~v~~~~~---~p~~~ll~~~~~~I~hgG-~~t~~Eal~~G~P~v~~p~~~d- 322 (392)
T TIGR01426 254 DWHVVLSVGRGVDPA---DLGE-LP--PNVEVRQW---VPQLEILKKADAFITHGG-MNSTMEALFNGVPMVAVPQGAD- 322 (392)
T ss_pred CCeEEEEECCCCChh---Hhcc-CC--CCeEEeCC---CCHHHHHhhCCEEEECCC-chHHHHHHHhCCCEEecCCccc-
Confidence 346666665543322 2222 22 35655443 256789999999998888 6778999999999999986532
Q ss_pred hhHHHHHHHHHHCCCeeecC
Q 014420 369 WKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 369 ~k~~rf~~~L~~~G~~r~f~ 388 (425)
-....+.+++.|+...+.
T Consensus 323 --q~~~a~~l~~~g~g~~l~ 340 (392)
T TIGR01426 323 --QPMTARRIAELGLGRHLP 340 (392)
T ss_pred --HHHHHHHHHHCCCEEEec
Confidence 223467788889876664
No 52
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.78 E-value=0.059 Score=53.42 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC-Ch-HHHHHHHHcCCcEEEEcCC
Q 014420 290 GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD-SI-SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 290 gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD-Sv-SMlsEA~atGkPV~v~~l~ 365 (425)
-.+.|..+-.. .+.+++.. ..++.+...-...-+..+|+.||+++++.- +. ..+.||+++|+||+.....
T Consensus 222 ~~l~ivG~g~~----~~~l~~~~--~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~ 293 (351)
T cd03804 222 KRLVVIGDGPE----LDRLRAKA--GPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKG 293 (351)
T ss_pred CcEEEEECChh----HHHHHhhc--CCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCC
Confidence 46666665322 23343333 246776665444458899999999998742 22 3357999999999887543
No 53
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=96.75 E-value=0.12 Score=51.91 Aligned_cols=196 Identities=15% Similarity=0.110 Sum_probs=101.6
Q ss_pred hhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC---------CCCCCccEEEeccCCCCCCCccccccchh
Q 014420 137 ETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR---------VHLNRFDLVITPRHDYYPLTPEGQEKIPQ 207 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr---------~~~~~FDlVivP~HD~~~l~~~~~~~~~~ 207 (425)
..+.+..||+|++........+..+++..+.+..++...+.. .....+|.+++..+... .+
T Consensus 78 ~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~----------~~ 147 (359)
T PRK09922 78 KWLKETQPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIK----------EQ 147 (359)
T ss_pred HHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHH----------HH
Confidence 456677899999987666666666777666544333322211 01356788887655421 11
Q ss_pred hhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH
Q 014420 208 FLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV 287 (425)
Q Consensus 208 ~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~ 287 (425)
+....++ . .++.+. +|+++.+.... .......+.+.+.+|.-+..-.=+-+ .+++.+..+ .
T Consensus 148 ~~~~~~~----~-~ki~vi---~N~id~~~~~~-------~~~~~~~~~~i~~~Grl~~~~~k~~~---~l~~a~~~~-~ 208 (359)
T PRK09922 148 MMARGIS----A-QRISVI---YNPVEIKTIII-------PPPERDKPAVFLYVGRLKFEGQKNVK---ELFDGLSQT-T 208 (359)
T ss_pred HHHcCCC----H-HHEEEE---cCCCCHHHccC-------CCcccCCCcEEEEEEEEecccCcCHH---HHHHHHHhh-C
Confidence 1111111 2 344443 45776432110 00111235567777763211011111 233333322 1
Q ss_pred hcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCCh---HHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEE
Q 014420 288 SCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNP---HLGHLAWADAFVVTADS---ISLISEACSTGKPVYV 361 (425)
Q Consensus 288 ~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NP---y~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v 361 (425)
....+.|...-.--++..+.+ +.+.-..++.+-.. -.|| +..+|+.||.+|.+.-. -.-+.||.++|+||+.
T Consensus 209 ~~~~l~ivG~g~~~~~l~~~~-~~~~l~~~v~f~G~-~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~ 286 (359)
T PRK09922 209 GEWQLHIIGDGSDFEKCKAYS-RELGIEQRIIWHGW-QSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCIS 286 (359)
T ss_pred CCeEEEEEeCCccHHHHHHHH-HHcCCCCeEEEecc-cCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEE
Confidence 234666665543323333333 33433235644433 2343 46789999999998653 3558899999999987
Q ss_pred Ec
Q 014420 362 VG 363 (425)
Q Consensus 362 ~~ 363 (425)
..
T Consensus 287 s~ 288 (359)
T PRK09922 287 SD 288 (359)
T ss_pred eC
Confidence 75
No 54
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.67 E-value=0.085 Score=53.11 Aligned_cols=115 Identities=14% Similarity=0.016 Sum_probs=65.1
Q ss_pred hhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh--cCeEEEEeCCCC--c--HHHHHHHHHhhCCCCcEE
Q 014420 246 HEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS--CGSIRISFSMRT--P--EKVSKIIIKELGNNPKVH 319 (425)
Q Consensus 246 ~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~--~gsl~iT~SRRT--P--~~~~~~L~~~l~~~~~v~ 319 (425)
..+++..+...+++.+|--...-.++. |++.+..+... +-.+.|..+-.. + .+..+.+.+.......+.
T Consensus 181 ~~~~~~~~~~~~i~~vgrl~~~Kg~~~-----ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~ 255 (372)
T cd03792 181 LEKYGIDPERPYITQVSRFDPWKDPFG-----VIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIH 255 (372)
T ss_pred HHHhCCCCCCcEEEEEeccccccCcHH-----HHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeE
Confidence 344554455567777775333222222 22333333333 246666665321 2 223344443333334565
Q ss_pred EecCC--CCChHHHHHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcCC
Q 014420 320 IWDGE--EPNPHLGHLAWADAFVVTADSI---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 320 iwd~~--g~NPy~~~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l~ 365 (425)
+.... ....+..+|+.||.++.++.+- ..+.||.++|+||++....
T Consensus 256 ~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~ 306 (372)
T cd03792 256 VLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVG 306 (372)
T ss_pred EEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCC
Confidence 55443 3445779999999999887543 3688999999999876544
No 55
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.63 E-value=0.16 Score=48.71 Aligned_cols=113 Identities=22% Similarity=0.175 Sum_probs=65.1
Q ss_pred hhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh--cCeEEEEeCCCCc-HHHHHHHHHhhCCCCcEEEecCC
Q 014420 248 EFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS--CGSIRISFSMRTP-EKVSKIIIKELGNNPKVHIWDGE 324 (425)
Q Consensus 248 ~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~--~gsl~iT~SRRTP-~~~~~~L~~~l~~~~~v~iwd~~ 324 (425)
.+....+..+++.+|+-+..-.+ +. +.+.+..+.+. +-.+.|..+---. ....+.+.+.+...+++.+-+.-
T Consensus 196 ~~~~~~~~~~i~~~G~~~~~K~~--~~---li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 270 (375)
T cd03821 196 KFPILPDKRIILFLGRLHPKKGL--DL---LIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGML 270 (375)
T ss_pred hccCCCCCcEEEEEeCcchhcCH--HH---HHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCC
Confidence 34445566778888875543322 22 33444444443 2356665542111 12222222333333456544444
Q ss_pred CCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCC
Q 014420 325 EPNPHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 325 g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~ 365 (425)
....+..+|..||.++.+... -..+.||.++|+||++-...
T Consensus 271 ~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~ 314 (375)
T cd03821 271 YGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV 314 (375)
T ss_pred ChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC
Confidence 445688999999999998752 34589999999999886543
No 56
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.62 E-value=0.12 Score=50.19 Aligned_cols=105 Identities=19% Similarity=0.148 Sum_probs=61.6
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHH
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGH 332 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~ 332 (425)
....+++.+|.-+..- +-+. +.+.+.++- .-.+.|..+--......+.+++ +....++.+...-..+-+..+
T Consensus 189 ~~~~~i~~~G~~~~~K--~~~~---li~a~~~l~--~~~l~i~G~g~~~~~~~~~~~~-~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 189 AGRPFFLFVGRLVYYK--GLDV---LLEAAAALP--DAPLVIVGEGPLEAELEALAAA-LGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CCCcEEEEeccccccc--CHHH---HHHHHHhcc--CcEEEEEeCChhHHHHHHHHHh-cCCcceEEEcCCCCHHHHHHH
Confidence 3455666777644322 2222 223333222 4567777654333344444322 334457766655444457899
Q ss_pred HHHcCeEEEcC----CC-hHHHHHHHHcCCcEEEEcCC
Q 014420 333 LAWADAFVVTA----DS-ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 333 La~AD~ivVTa----DS-vSMlsEA~atGkPV~v~~l~ 365 (425)
++.||.++.+. ++ -..+.||.++|+||+.-..+
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~ 298 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIG 298 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCC
Confidence 99999999874 22 33588999999999986544
No 57
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.55 E-value=0.093 Score=56.58 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=45.9
Q ss_pred hHHHHHHH--cCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecC
Q 014420 328 PHLGHLAW--ADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 328 Py~~~La~--AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~ 388 (425)
|..++|+. ++++|.=|+ .+.+.||+.+|+|++++|.-. +-....+.+++.|+...++
T Consensus 355 Pq~~lL~hp~v~~fItHGG-~~s~~Eal~~GvP~v~iP~~~---DQ~~Na~rv~~~G~G~~l~ 413 (507)
T PHA03392 355 PQRAVLKHKNVKAFVTQGG-VQSTDEAIDALVPMVGLPMMG---DQFYNTNKYVELGIGRALD 413 (507)
T ss_pred CHHHHhcCCCCCEEEecCC-cccHHHHHHcCCCEEECCCCc---cHHHHHHHHHHcCcEEEec
Confidence 77899954 888888888 888999999999999999763 3334477888999886654
No 58
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.54 E-value=0.23 Score=51.56 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=99.1
Q ss_pred ccCCCCcEEEEecCcchHHHHHHHHH--cCCC-eEEEEecCCC-------------CCCCCccEEEeccCCCCCCCcccc
Q 014420 139 YEKDGPLLVVASGRDTISIASSIKRL--ASDN-VFVVQIQHPR-------------VHLNRFDLVITPRHDYYPLTPEGQ 202 (425)
Q Consensus 139 l~~~~PdLVI~~Gr~t~~~~~~lrr~--~~~~-~~vV~i~~Pr-------------~~~~~FDlVivP~HD~~~l~~~~~ 202 (425)
+....||+|.+=-+.+...+..+++. .+++ .+++|--+.. .-.+..|.|++..++..
T Consensus 114 ~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~~~~~~~~~~~~~~~~~~~ad~vv~~S~~~~------- 186 (406)
T PRK15427 114 ATPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWA------- 186 (406)
T ss_pred hccCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEcccccccchhhhhhhHHHHHHHHhCCEEEECCHHHH-------
Confidence 35667999998655544555556552 2232 2333311111 11246788888777531
Q ss_pred ccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHH
Q 014420 203 EKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHL 282 (425)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l 282 (425)
..+..+-. +..++.+. +|.++.+...... -.....+..++-+|--...-.+ + .+.+.+
T Consensus 187 ----~~l~~~g~----~~~ki~vi---~nGvd~~~f~~~~------~~~~~~~~~il~vGrl~~~Kg~--~---~ll~a~ 244 (406)
T PRK15427 187 ----GRLQKMGC----PPEKIAVS---RMGVDMTRFSPRP------VKAPATPLEIISVARLTEKKGL--H---VAIEAC 244 (406)
T ss_pred ----HHHHHcCC----CHHHEEEc---CCCCCHHHcCCCc------cccCCCCeEEEEEeCcchhcCH--H---HHHHHH
Confidence 11111101 12344332 4566665432100 0012244556667754332222 2 133444
Q ss_pred HHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC--------C-hHHHHH
Q 014420 283 LNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD--------S-ISLISE 351 (425)
Q Consensus 283 ~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD--------S-vSMlsE 351 (425)
..+..++ -.+.|...---.+++.+.++ .+.-..++.+...-..+-...+|+.||.+|.+.- . -+.+.|
T Consensus 245 ~~l~~~~~~~~l~ivG~G~~~~~l~~~~~-~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llE 323 (406)
T PRK15427 245 RQLKEQGVAFRYRILGIGPWERRLRTLIE-QYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALME 323 (406)
T ss_pred HHHHhhCCCEEEEEEECchhHHHHHHHHH-HcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHH
Confidence 4443333 35666654322233333333 3332234544333333457899999999999752 2 255899
Q ss_pred HHHcCCcEEEEcCC
Q 014420 352 ACSTGKPVYVVGAE 365 (425)
Q Consensus 352 A~atGkPV~v~~l~ 365 (425)
|.++|+||+.-...
T Consensus 324 Ama~G~PVI~t~~~ 337 (406)
T PRK15427 324 AMAVGIPVVSTLHS 337 (406)
T ss_pred HHhCCCCEEEeCCC
Confidence 99999999886543
No 59
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.43 E-value=0.065 Score=51.70 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=38.7
Q ss_pred CcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCCC
Q 014420 316 PKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 316 ~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~~ 366 (425)
.++.+...-..+-+..+|+.||+++.++-+ -+.+.||+++|+||+..+.+.
T Consensus 247 ~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~ 300 (364)
T cd03814 247 PNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG 300 (364)
T ss_pred CcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC
Confidence 456655443455688999999999988653 356999999999998876553
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.32 E-value=0.16 Score=51.42 Aligned_cols=199 Identities=15% Similarity=0.086 Sum_probs=101.1
Q ss_pred CCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC------------------------CCCCCCccEEEeccCCCCCC
Q 014420 142 DGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP------------------------RVHLNRFDLVITPRHDYYPL 197 (425)
Q Consensus 142 ~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P------------------------r~~~~~FDlVivP~HD~~~l 197 (425)
..||+|.+-...+...+..+++..+. ++++. -|- +.....+|.|++...+..
T Consensus 100 ~~~Diih~h~~~~~~~~~~~~~~~~~-p~v~t-~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~-- 175 (405)
T TIGR03449 100 GYYDLIHSHYWLSGQVGWLLRDRWGV-PLVHT-AHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEA-- 175 (405)
T ss_pred CCCCeEEechHHHHHHHHHHHHhcCC-CEEEe-ccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHH--
Confidence 46999987665555666666776665 33332 221 002345788887654321
Q ss_pred CccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHH-HHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHH
Q 014420 198 TPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRS-AASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAK 276 (425)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~-a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~ 276 (425)
..+...+-. ...++.+. +|.++.+.... .....+..++..+.+.+++.+|.-...-.+ +
T Consensus 176 --------~~~~~~~~~----~~~ki~vi---~ngvd~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~--~--- 235 (405)
T TIGR03449 176 --------RDLVRHYDA----DPDRIDVV---APGADLERFRPGDRATERARLGLPLDTKVVAFVGRIQPLKAP--D--- 235 (405)
T ss_pred --------HHHHHHcCC----ChhhEEEE---CCCcCHHHcCCCcHHHHHHhcCCCCCCcEEEEecCCCcccCH--H---
Confidence 011111111 11333322 24555443311 122234455544455666666654332222 2
Q ss_pred HHHHHHHHHHHhc----CeEEEEeC--CC---CcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCCh-
Q 014420 277 QLTAHLLNVLVSC----GSIRISFS--MR---TPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSI- 346 (425)
Q Consensus 277 ~L~~~l~~l~~~~----gsl~iT~S--RR---TP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSv- 346 (425)
.+.+.+..+..+. -.+.|... .+ ..++..+.+ +.+.-..++.+...-..+-+..+|+.||+++.+..+-
T Consensus 236 ~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~-~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~ 314 (405)
T TIGR03449 236 VLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELA-AELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNES 314 (405)
T ss_pred HHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHH-HHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCC
Confidence 2344444444432 23455442 22 123333333 3343334565544333345679999999999886542
Q ss_pred --HHHHHHHHcCCcEEEEcCC
Q 014420 347 --SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 347 --SMlsEA~atGkPV~v~~l~ 365 (425)
..+-||.++|+||+.....
T Consensus 315 ~g~~~lEAma~G~Pvi~~~~~ 335 (405)
T TIGR03449 315 FGLVAMEAQACGTPVVAARVG 335 (405)
T ss_pred cChHHHHHHHcCCCEEEecCC
Confidence 4699999999999886543
No 61
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.29 E-value=0.4 Score=49.07 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC--CCCCCccEEEeccCCCCCCCccccccchhhhhcccCCCCCC
Q 014420 142 DGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR--VHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPP 219 (425)
Q Consensus 142 ~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr--~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~ 219 (425)
..+|+|..-.+. .....+++.+....+++++-+.- -.....|.||++.+.. .+.+++.++ .
T Consensus 98 ~~~~vi~v~~~~--~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~ii~~S~~~-----------~~~~~~~~~----~ 160 (380)
T PRK15484 98 TKDSVIVIHNSM--KLYRQIRERAPQAKLVMHMHNAFEPELLDKNAKIIVPSQFL-----------KKFYEERLP----N 160 (380)
T ss_pred CCCcEEEEeCcH--HhHHHHHhhCCCCCEEEEEecccChhHhccCCEEEEcCHHH-----------HHHHHhhCC----C
Confidence 457877766643 23444555555444455443321 1234568888876542 122222222 2
Q ss_pred CCcEEEecCCCCcCChHHHHH-HHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc--CeEEEEe
Q 014420 220 DGHVVLTTGALHQIDSAALRS-AASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC--GSIRISF 296 (425)
Q Consensus 220 ~~NVl~T~Galh~v~~~~L~~-a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~--gsl~iT~ 296 (425)
.++.+. +|.++.+.... ......+.++..+...+++.+|--+....++. |.+.+..+.++. -.+.|..
T Consensus 161 -~~i~vI---pngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~-----Li~A~~~l~~~~p~~~lvivG 231 (380)
T PRK15484 161 -ADISIV---PNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILL-----LMQAFEKLATAHSNLKLVVVG 231 (380)
T ss_pred -CCEEEe---cCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHH-----HHHHHHHHHHhCCCeEEEEEe
Confidence 333222 34566543321 11223344554445555555654443322222 334444444432 3677765
Q ss_pred CCCCc-----HHHHHHHHH---hhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC---C-hHHHHHHHHcCCcEEEEcC
Q 014420 297 SMRTP-----EKVSKIIIK---ELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD---S-ISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 297 SRRTP-----~~~~~~L~~---~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD---S-vSMlsEA~atGkPV~v~~l 364 (425)
+--.. .+..+.+++ .+. ..+.+..+-..+....+|+.||.+|++.. . -..+.||.++|+||+.-..
T Consensus 232 ~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~ 309 (380)
T PRK15484 232 DPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTK 309 (380)
T ss_pred CCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCC
Confidence 43211 122333333 232 34544444334567899999999999763 2 1346799999999988654
No 62
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.16 Score=51.12 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=81.7
Q ss_pred cCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh-cCeEEEEeCCCCcHHHHHHHHH
Q 014420 232 QIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS-CGSIRISFSMRTPEKVSKIIIK 310 (425)
Q Consensus 232 ~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~-~gsl~iT~SRRTP~~~~~~L~~ 310 (425)
+++++..+ .+++-.++ +...+.+-.||+.- ..|.-++...+.+ .--+.|.++ ........+++
T Consensus 141 ~lr~eF~~-~r~~~~~r----~~r~ilI~lGGsDp---------k~lt~kvl~~L~~~~~nl~iV~g--s~~p~l~~l~k 204 (318)
T COG3980 141 PLRPEFYA-LREENTER----PKRDILITLGGSDP---------KNLTLKVLAELEQKNVNLHIVVG--SSNPTLKNLRK 204 (318)
T ss_pred eccHHHHH-hHHHHhhc----chheEEEEccCCCh---------hhhHHHHHHHhhccCeeEEEEec--CCCcchhHHHH
Confidence 56776644 34333222 55668999999653 1233333333433 234444443 22223344444
Q ss_pred hhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHH-HHHHHHCCCeeec
Q 014420 311 ELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDF-HKSLRERGVVRPF 387 (425)
Q Consensus 311 ~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf-~~~L~~~G~~r~f 387 (425)
.....+++.++-. .|.|.+++-.||++|+.++ |.++|||..|.|..++++- ..|.- .+.|...|++.-+
T Consensus 205 ~~~~~~~i~~~~~--~~dma~LMke~d~aI~AaG--stlyEa~~lgvP~l~l~~a----~NQ~~~a~~f~~lg~~~~l 274 (318)
T COG3980 205 RAEKYPNINLYID--TNDMAELMKEADLAISAAG--STLYEALLLGVPSLVLPLA----ENQIATAKEFEALGIIKQL 274 (318)
T ss_pred HHhhCCCeeeEec--chhHHHHHHhcchheeccc--hHHHHHHHhcCCceEEeee----ccHHHHHHHHHhcCchhhc
Confidence 4444466766544 7899999999999999999 6799999999998777654 22222 6778888887443
No 63
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.98 E-value=0.14 Score=54.05 Aligned_cols=192 Identities=16% Similarity=0.033 Sum_probs=103.2
Q ss_pred CCCCcEEEEecC-cchHHHHHHHHHcCCCeEEEEecC--CC-----------------------------CCCCCccEEE
Q 014420 141 KDGPLLVVASGR-DTISIASSIKRLASDNVFVVQIQH--PR-----------------------------VHLNRFDLVI 188 (425)
Q Consensus 141 ~~~PdLVI~~Gr-~t~~~~~~lrr~~~~~~~vV~i~~--Pr-----------------------------~~~~~FDlVi 188 (425)
.+.+|++.+... .+..++..+++..+. ++++.+.. ++ .-.+.+|.|+
T Consensus 171 ~~~~dviH~~s~~~~g~~~~~~~~~~~~-p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii 249 (475)
T cd03813 171 LPKADVYHAVSTGYAGLLGALAKARRGT-PFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRIT 249 (475)
T ss_pred CCCCCEEeccCcchHHHHHHHHHHHhCC-CEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 367899988643 445566667777765 55554322 10 0124678888
Q ss_pred eccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCc
Q 014420 189 TPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCC 268 (425)
Q Consensus 189 vP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~ 268 (425)
+..+... ..+..+-. +..++.+. +|.++.+........ ...+.+.+++.+|.-....
T Consensus 250 ~~s~~~~-----------~~~~~~g~----~~~ki~vI---pNgid~~~f~~~~~~-----~~~~~~~~i~~vGrl~~~K 306 (475)
T cd03813 250 TLYEGNR-----------ERQIEDGA----DPEKIRVI---PNGIDPERFAPARRA-----RPEKEPPVVGLIGRVVPIK 306 (475)
T ss_pred ecCHHHH-----------HHHHHcCC----CHHHeEEe---CCCcCHHHcCCcccc-----ccCCCCcEEEEEecccccc
Confidence 8665431 00111100 11344332 456776554321110 1234566777887654332
Q ss_pred ccCHHHHHHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHH---HhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcC
Q 014420 269 RYGSDLAKQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIII---KELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA 343 (425)
Q Consensus 269 ~~~~~~a~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~---~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa 343 (425)
.++ .+++.+..+.... -.+.|..+--..++..+.++ +.+.-..++.+.. .+.+..+|+.||.++.+.
T Consensus 307 g~~-----~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS 378 (475)
T cd03813 307 DIK-----TFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTS 378 (475)
T ss_pred CHH-----HHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCc
Confidence 222 2344444444433 35666654422233333333 3343334565543 566889999999999986
Q ss_pred CC---hHHHHHHHHcCCcEEEEcC
Q 014420 344 DS---ISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 344 DS---vSMlsEA~atGkPV~v~~l 364 (425)
-| -.-+-||.++|+||+.-..
T Consensus 379 ~~Eg~p~~vlEAma~G~PVVatd~ 402 (475)
T cd03813 379 ISEGQPLVILEAMAAGIPVVATDV 402 (475)
T ss_pred hhhcCChHHHHHHHcCCCEEECCC
Confidence 43 3469999999999987433
No 64
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.83 E-value=1 Score=47.65 Aligned_cols=213 Identities=14% Similarity=0.086 Sum_probs=116.7
Q ss_pred CCcEEEEecCcchH--------HHHHHHHHcCCCeEEEEecCC------------CCCCCCccEEEeccCCCCCCCcccc
Q 014420 143 GPLLVVASGRDTIS--------IASSIKRLASDNVFVVQIQHP------------RVHLNRFDLVITPRHDYYPLTPEGQ 202 (425)
Q Consensus 143 ~PdLVI~~Gr~t~~--------~~~~lrr~~~~~~~vV~i~~P------------r~~~~~FDlVivP~HD~~~l~~~~~ 202 (425)
.-|++|+.||.... .-.+++++.|.++ .+.=|.. +.-.+++|+|.+=....+
T Consensus 117 ~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv-~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD~~S~------- 188 (426)
T PRK10017 117 GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPL-YMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVSL------- 188 (426)
T ss_pred hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCE-EEECCcCCCcCCHHHHHHHHHHHhcCCEEEEccHHHH-------
Confidence 46999999987421 1134567777643 4433332 234568899888544432
Q ss_pred ccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHH---H-HHHhhhhhhCCCCCCcEEEEEcCCC---CCcccC-HHH
Q 014420 203 EKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALR---S-AASAWHEEFAPLPKPLVVVNVGGPT---GCCRYG-SDL 274 (425)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~---~-a~~~~~~~l~~lp~p~vavLIGG~s---~~~~~~-~~~ 274 (425)
..++++=- ..+||.++.-+---+.+.... . +-..|... ...++.|++.+-+-. +.+..+ ++.
T Consensus 189 ----~~Lk~lGv----~~~~v~~~aDpAF~L~~~~~~~~~~~~~~~~~~~--~~~~~~Vgisvr~~~~~~~~~~~~~~~Y 258 (426)
T PRK10017 189 ----DLMKRSNI----TTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDV--AAQQKTVAITLRELAPFDKRLGTTQQAY 258 (426)
T ss_pred ----HHHHHhCC----CccceEEecChhhhCCccccccccchhhhhhhcc--cccCCEEEEEecccccccccccccHHHH
Confidence 12222211 225666553221111111000 0 00112111 124567777776432 222233 233
Q ss_pred HHHHHHHHHHHHHhcCe-EEEEeC------CCCcHHHHHHHHHhhCCCCcEEEecCCCCCh--HHHHHHHcCeEEEcCCC
Q 014420 275 AKQLTAHLLNVLVSCGS-IRISFS------MRTPEKVSKIIIKELGNNPKVHIWDGEEPNP--HLGHLAWADAFVVTADS 345 (425)
Q Consensus 275 a~~L~~~l~~l~~~~gs-l~iT~S------RRTP~~~~~~L~~~l~~~~~v~iwd~~g~NP--y~~~La~AD~ivVTaDS 345 (425)
.+.+++.+..++.++.. +++++. .+....+...+.+.+.....+.+... ..|+ +.++++.+|.+|.+-=
T Consensus 259 ~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~-~~~~~e~~~iIs~~dl~ig~Rl- 336 (426)
T PRK10017 259 EKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMD-ELNDLEMGKILGACELTVGTRL- 336 (426)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecC-CCChHHHHHHHhhCCEEEEecc-
Confidence 34555556666655444 445543 45566667778787764333434322 1445 4599999999998876
Q ss_pred hHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHH
Q 014420 346 ISLISEACSTGKPVYVVGAERCTWKFTDFHKSLR 379 (425)
Q Consensus 346 vSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~ 379 (425)
-++|. |+++|+|++.++++ .|+..|++.|-
T Consensus 337 Ha~I~-a~~~gvP~i~i~Y~---~K~~~~~~~lg 366 (426)
T PRK10017 337 HSAII-SMNFGTPAIAINYE---HKSAGIMQQLG 366 (426)
T ss_pred hHHHH-HHHcCCCEEEeeeh---HHHHHHHHHcC
Confidence 77776 89999999999886 67777776554
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.77 E-value=0.24 Score=49.55 Aligned_cols=51 Identities=22% Similarity=0.124 Sum_probs=37.5
Q ss_pred CcEEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCCC
Q 014420 316 PKVHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 316 ~~v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~~ 366 (425)
.++.+-+.-....+..+|..||.++.+..+ -.++.||.++|+||+....++
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~ 333 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG 333 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC
Confidence 456555554444567999999999987554 245789999999999876543
No 66
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.69 E-value=0.43 Score=42.69 Aligned_cols=77 Identities=19% Similarity=0.067 Sum_probs=49.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCC-CCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCC
Q 014420 290 GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGE-EPNPHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 290 gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~-g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~ 365 (425)
..+.+..+... ......+...+....++.+.+.- ..+-+..+++.||.++.+..+ ...+.||.++|+||+....+
T Consensus 136 ~~~~i~G~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 136 LKLVIAGDGPE-REYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred eEEEEEeCCCC-hHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 45555554433 33333212223334567776552 345567777779999999985 67799999999999987765
Q ss_pred CC
Q 014420 366 RC 367 (425)
Q Consensus 366 ~~ 367 (425)
..
T Consensus 215 ~~ 216 (229)
T cd01635 215 GP 216 (229)
T ss_pred Cc
Confidence 43
No 67
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.66 E-value=0.56 Score=48.66 Aligned_cols=72 Identities=25% Similarity=0.055 Sum_probs=43.9
Q ss_pred eEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecC-CCCChHHHHHHHcCeEEEcCCC------hHHHHHHHHcCCcEEEEc
Q 014420 291 SIRISFSMRTPEKVSKIIIKELGNNPKVHIWDG-EEPNPHLGHLAWADAFVVTADS------ISLISEACSTGKPVYVVG 363 (425)
Q Consensus 291 sl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~-~g~NPy~~~La~AD~ivVTaDS------vSMlsEA~atGkPV~v~~ 363 (425)
.+.|...----+++.+.++ .+.- .++.++.+ -+.+.+..+|+.||.+|+...| -+-+.||.++|+||+...
T Consensus 271 ~l~ivG~G~~~~~l~~~~~-~~~l-~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~ 348 (415)
T cd03816 271 LCIITGKGPLKEKYLERIK-ELKL-KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALD 348 (415)
T ss_pred EEEEEecCccHHHHHHHHH-HcCC-CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeC
Confidence 5555543222233344443 3332 35655543 3566788999999999863222 224889999999998754
Q ss_pred C
Q 014420 364 A 364 (425)
Q Consensus 364 l 364 (425)
.
T Consensus 349 ~ 349 (415)
T cd03816 349 F 349 (415)
T ss_pred C
Confidence 3
No 68
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.66 E-value=0.19 Score=52.77 Aligned_cols=116 Identities=15% Similarity=-0.031 Sum_probs=66.5
Q ss_pred HHhhhhhhCCCC--CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC-CcE
Q 014420 242 ASAWHEEFAPLP--KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN-PKV 318 (425)
Q Consensus 242 ~~~~~~~l~~lp--~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v 318 (425)
...++.+++..+ ...+++.+|--...-.++. |.+.+..+...+..+.|..+-. ++..+.+++..... .++
T Consensus 276 k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~-----li~a~~~l~~~~~~lvi~G~g~--~~~~~~l~~~~~~~~~~v 348 (473)
T TIGR02095 276 KEALQEELGLPVDDDVPLFGVISRLTQQKGVDL-----LLAALPELLELGGQLVVLGTGD--PELEEALRELAERYPGNV 348 (473)
T ss_pred HHHHHHHcCCCccCCCCEEEEEecCccccChHH-----HHHHHHHHHHcCcEEEEECCCC--HHHHHHHHHHHHHCCCcE
Confidence 344566776443 5567778887554333222 3344444444446777776542 33333443322111 245
Q ss_pred EEecCCCCChHHHHHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcC
Q 014420 319 HIWDGEEPNPHLGHLAWADAFVVTADSI---SLISEACSTGKPVYVVGA 364 (425)
Q Consensus 319 ~iwd~~g~NPy~~~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l 364 (425)
.++.+-..+-...+|+.||.++.++-.- ..+-||.++|+||++-..
T Consensus 349 ~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~ 397 (473)
T TIGR02095 349 RVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRT 397 (473)
T ss_pred EEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccC
Confidence 5554322333568999999999986432 346799999999987543
No 69
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.53 E-value=0.41 Score=52.77 Aligned_cols=208 Identities=15% Similarity=0.139 Sum_probs=114.0
Q ss_pred CCCchhhh--hhHHHHHHHhhhhccCCCCcEEEEe--cCcchHHHHHHHHHcCCCeEEEEecCCC---C-------CCCC
Q 014420 118 VGLSSVLE--ADVRQIVTMARETYEKDGPLLVVAS--GRDTISIASSIKRLASDNVFVVQIQHPR---V-------HLNR 183 (425)
Q Consensus 118 ~g~~~~~~--~~~~~~~~~a~~~l~~~~PdLVI~~--Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr---~-------~~~~ 183 (425)
.|+..++. +...++.++..+.+....||++|.. -+.....+..+|+. |.+..+||---|. + -.+.
T Consensus 283 mG~~EVL~~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~-Gi~ipviyYVsPqVWAWR~~Rikki~k~ 361 (608)
T PRK01021 283 SGFWEVLLALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKR-GYKGKIVHYVCPSIWAWRPKRKTILEKY 361 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhc-CCCCCEEEEECccceeeCcchHHHHHHH
Confidence 35555554 2345566666677778899999985 45567788888776 4212367777782 1 2344
Q ss_pred ccEEEe--ccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHH-HHHHHHhhhhhhCCCCCCcEEEE
Q 014420 184 FDLVIT--PRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAA-LRSAASAWHEEFAPLPKPLVVVN 260 (425)
Q Consensus 184 FDlViv--P~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~-L~~a~~~~~~~l~~lp~p~vavL 260 (425)
.|.+++ |+.- +|+. ..|-++... |. |+-++. ......++.++++..+...++.|
T Consensus 362 vD~ll~IfPFE~-----------------~~y~---~~gv~v~yV-GH--PL~d~i~~~~~~~~~r~~lgl~~~~~iIaL 418 (608)
T PRK01021 362 LDLLLLILPFEQ-----------------NLFK---DSPLRTVYL-GH--PLVETISSFSPNLSWKEQLHLPSDKPIVAA 418 (608)
T ss_pred hhhheecCccCH-----------------HHHH---hcCCCeEEE-CC--cHHhhcccCCCHHHHHHHcCCCCCCCEEEE
Confidence 575555 4332 2222 134444433 65 454331 12234456677775444444445
Q ss_pred EcCCCCCcccCHHHHHHHHHHHHHHHH-----hcCeEEEEeCCCCcHHHHHHHHHhhCCCC--cEEEecCCCCChHHHHH
Q 014420 261 VGGPTGCCRYGSDLAKQLTAHLLNVLV-----SCGSIRISFSMRTPEKVSKIIIKELGNNP--KVHIWDGEEPNPHLGHL 333 (425)
Q Consensus 261 IGG~s~~~~~~~~~a~~L~~~l~~l~~-----~~gsl~iT~SRRTP~~~~~~L~~~l~~~~--~v~iwd~~g~NPy~~~L 333 (425)
.=||.+ .+.+++...+.+.++ ..-...|... ++...+.+.+.+.+.+ .+.+.++ .+- ...+
T Consensus 419 LPGSR~------~EI~rllPv~l~aa~~~~l~~~l~fvvp~a---~~~~~~~i~~~~~~~~~~~~~ii~~--~~~-~~~m 486 (608)
T PRK01021 419 FPGSRR------GDILRNLTIQVQAFLASSLASTHQLLVSSA---NPKYDHLILEVLQQEGCLHSHIVPS--QFR-YELM 486 (608)
T ss_pred ECCCCH------HHHHHHHHHHHHHHHHHHhccCeEEEEecC---chhhHHHHHHHHhhcCCCCeEEecC--cch-HHHH
Confidence 555554 233444444333332 2234444333 3333334444332211 2334433 122 4899
Q ss_pred HHcCeEEEcCCChHHHHHHHHcCCcEEEEc
Q 014420 334 AWADAFVVTADSISLISEACSTGKPVYVVG 363 (425)
Q Consensus 334 a~AD~ivVTaDSvSMlsEA~atGkPV~v~~ 363 (425)
+.||+++++++.+++ |++..|+|.+|+.
T Consensus 487 ~aaD~aLaaSGTaTL--EaAL~g~PmVV~Y 514 (608)
T PRK01021 487 RECDCALAKCGTIVL--ETALNQTPTIVTC 514 (608)
T ss_pred HhcCeeeecCCHHHH--HHHHhCCCEEEEE
Confidence 999999999997765 9999999999875
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.51 E-value=1.3 Score=49.83 Aligned_cols=85 Identities=16% Similarity=0.049 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcC---CChHHHHHH
Q 014420 278 LTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA---DSISLISEA 352 (425)
Q Consensus 278 L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa---DSvSMlsEA 352 (425)
|++.+..+.+.. -.+.|..+-.-.+++.+.+ +.+.-..++.+... .+....+|..||.+|+++ ..-+.+-||
T Consensus 535 LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~-~~lgL~~~V~flG~--~~dv~~ll~aaDv~VlpS~~Egfp~vlLEA 611 (694)
T PRK15179 535 WVEAAQRFAASHPKVRFIMVGGGPLLESVREFA-QRLGMGERILFTGL--SRRVGYWLTQFNAFLLLSRFEGLPNVLIEA 611 (694)
T ss_pred HHHHHHHHHHHCcCeEEEEEccCcchHHHHHHH-HHcCCCCcEEEcCC--cchHHHHHHhcCEEEeccccccchHHHHHH
Confidence 334444444433 3677776633223343333 33443345655444 234778999999999963 446778999
Q ss_pred HHcCCcEEEEcCC
Q 014420 353 CSTGKPVYVVGAE 365 (425)
Q Consensus 353 ~atGkPV~v~~l~ 365 (425)
.++|+||+.-...
T Consensus 612 MA~G~PVVat~~g 624 (694)
T PRK15179 612 QFSGVPVVTTLAG 624 (694)
T ss_pred HHcCCeEEEECCC
Confidence 9999999886543
No 71
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.51 E-value=0.61 Score=46.52 Aligned_cols=104 Identities=23% Similarity=0.193 Sum_probs=60.9
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLG 331 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~ 331 (425)
++..++.+|.-+..-.++ .+++.+..+...+ ..+.|...--...+....+ +.+.-...+ .+.+ ..+-...
T Consensus 203 ~~~~i~~vgrl~~~K~~~-----~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~-~~~~~~~~v-~~~g-~~~~~~~ 274 (372)
T cd04949 203 KPHKIITVARLAPEKQLD-----QLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELI-EELGLEDYV-FLKG-YTRDLDE 274 (372)
T ss_pred CCCeEEEEEccCcccCHH-----HHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHH-HHcCCcceE-EEcC-CCCCHHH
Confidence 455677788654433222 2345555555443 3566655433333333333 333322234 4444 2334778
Q ss_pred HHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCC
Q 014420 332 HLAWADAFVVTADS---ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 332 ~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~ 365 (425)
+|+.||++|.++.+ -..+.||.++|+||+.....
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~ 311 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVN 311 (372)
T ss_pred HHhhhhEEEecccccccChHHHHHHhCCCCEEEecCC
Confidence 99999999999854 34689999999999987543
No 72
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=95.33 E-value=0.23 Score=44.01 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=66.4
Q ss_pred hhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH---hcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEE
Q 014420 244 AWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV---SCGSIRISFSMRTPEKVSKIIIKELGNNPKVHI 320 (425)
Q Consensus 244 ~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~---~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~i 320 (425)
.++.......++.+++.+|.-...-.+ +. +++.+..+.. ..-.+.|..+-..-....... +.+.-...+.+
T Consensus 4 ~~~~~~~~~~~~~~il~~g~~~~~K~~--~~---li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~-~~~~~~~~i~~ 77 (172)
T PF00534_consen 4 KLREKLKIPDKKKIILFIGRLDPEKGI--DL---LIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLI-EKLNLKENIIF 77 (172)
T ss_dssp HHHHHTTT-TTSEEEEEESESSGGGTH--HH---HHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHH-HHTTCGTTEEE
T ss_pred HHHHHcCCCCCCeEEEEEecCccccCH--HH---HHHHHHHHHhhcCCCeEEEEEccccccccccccc-ccccccccccc
Confidence 445555566777888888775553322 22 3344444332 223555665333333333333 33433346766
Q ss_pred ecCCCCChHHHHHHHcCeEEEcCC---ChHHHHHHHHcCCcEEEEcC
Q 014420 321 WDGEEPNPHLGHLAWADAFVVTAD---SISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 321 wd~~g~NPy~~~La~AD~ivVTaD---SvSMlsEA~atGkPV~v~~l 364 (425)
......+-+..+|..||.+|++.. .-.++.||+++|+||++-..
T Consensus 78 ~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~ 124 (172)
T PF00534_consen 78 LGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDI 124 (172)
T ss_dssp EESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESS
T ss_pred cccccccccccccccceeccccccccccccccccccccccceeeccc
Confidence 655334568899999999999965 45579999999999998753
No 73
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.30 E-value=1.5 Score=43.81 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=57.4
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh------cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCC
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS------CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEP 326 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~------~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~ 326 (425)
..+.+++.+|.-+..- +.+. +.+.+..+..+ +-.+.+...---.++..+.+ +.+.-...+ .+.+. .
T Consensus 192 ~~~~~i~~vGrl~~~K--g~~~---li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~-~~~~~~~~v-~~~g~-~ 263 (374)
T TIGR03088 192 DESVVVGTVGRLQAVK--DQPT---LVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMV-RAAGLAHLV-WLPGE-R 263 (374)
T ss_pred CCCeEEEEEecCCccc--CHHH---HHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHH-HHcCCcceE-EEcCC-c
Confidence 4556777777654322 2222 33444444432 22455554211113333333 333322234 33342 3
Q ss_pred ChHHHHHHHcCeEEEcCC---ChHHHHHHHHcCCcEEEEcC
Q 014420 327 NPHLGHLAWADAFVVTAD---SISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 327 NPy~~~La~AD~ivVTaD---SvSMlsEA~atGkPV~v~~l 364 (425)
+.+..+|+.||.++.+.. .-..+.||.++|+||++-..
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~ 304 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAV 304 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCC
Confidence 457899999999998743 44578999999999987554
No 74
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.28 E-value=0.28 Score=51.14 Aligned_cols=75 Identities=19% Similarity=0.013 Sum_probs=46.9
Q ss_pred CeEEEEeCCCCcH--HHHHHHHH---hhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCCh--H-HHHHHHHcCCcEEE
Q 014420 290 GSIRISFSMRTPE--KVSKIIIK---ELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSI--S-LISEACSTGKPVYV 361 (425)
Q Consensus 290 gsl~iT~SRRTP~--~~~~~L~~---~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSv--S-MlsEA~atGkPV~v 361 (425)
-.+.|..+-|.++ +..+.|++ .+.-..++.+...-...-+..+|+.||+++.|.-.- + -+-||.++|+||+.
T Consensus 274 ~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa 353 (419)
T cd03806 274 IKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA 353 (419)
T ss_pred eEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE
Confidence 4677777765543 23344433 232223565544333345689999999999887532 2 25799999999987
Q ss_pred EcC
Q 014420 362 VGA 364 (425)
Q Consensus 362 ~~l 364 (425)
...
T Consensus 354 ~~~ 356 (419)
T cd03806 354 HAS 356 (419)
T ss_pred EcC
Confidence 653
No 75
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.04 E-value=1.4 Score=45.92 Aligned_cols=117 Identities=19% Similarity=0.040 Sum_probs=66.7
Q ss_pred HHhhhhhhCC--CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCC-CCcE
Q 014420 242 ASAWHEEFAP--LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGN-NPKV 318 (425)
Q Consensus 242 ~~~~~~~l~~--lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~-~~~v 318 (425)
+.....+++. .+...+++.+|--...-.++. |.+.+..+......+.|..+- +++..+.+++.... ..++
T Consensus 281 k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~-----li~a~~~l~~~~~~lvi~G~g--~~~~~~~~~~~~~~~~~~v 353 (476)
T cd03791 281 KAALQEELGLPVDPDAPLFGFVGRLTEQKGIDL-----LLEALPELLELGGQLVILGSG--DPEYEEALRELAARYPGRV 353 (476)
T ss_pred HHHHHHHcCCCcCCCCCEEEEEeeccccccHHH-----HHHHHHHHHHcCcEEEEEecC--CHHHHHHHHHHHHhCCCcE
Confidence 4445666664 256667778876443322221 334444444444567776654 34444444432221 2356
Q ss_pred EEecCCCCChHHHHHHHcCeEEEcCC---ChHHHHHHHHcCCcEEEEcCC
Q 014420 319 HIWDGEEPNPHLGHLAWADAFVVTAD---SISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 319 ~iwd~~g~NPy~~~La~AD~ivVTaD---SvSMlsEA~atGkPV~v~~l~ 365 (425)
.++.+-..+-...+++.||.++.+.- .--.+-||.++|+||++-...
T Consensus 354 ~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g 403 (476)
T cd03791 354 AVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG 403 (476)
T ss_pred EEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC
Confidence 66654333334679999999998742 123457999999999875443
No 76
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=94.97 E-value=1.1 Score=46.85 Aligned_cols=225 Identities=16% Similarity=0.181 Sum_probs=119.6
Q ss_pred CCCchhhh--hhHHHHHHHhhhhccCCCCcEEEEe--cCcchHHHHHHHHHcCCCeEEEEecCCC---C-------CCCC
Q 014420 118 VGLSSVLE--ADVRQIVTMARETYEKDGPLLVVAS--GRDTISIASSIKRLASDNVFVVQIQHPR---V-------HLNR 183 (425)
Q Consensus 118 ~g~~~~~~--~~~~~~~~~a~~~l~~~~PdLVI~~--Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr---~-------~~~~ 183 (425)
.|+..++. +...++.+...+.+....||+||.. .+....++..+|++... ..+||---|. | -.+.
T Consensus 55 mG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~-~~viyYI~PqvWAWr~~R~~~i~~~ 133 (373)
T PF02684_consen 55 MGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIP-IKVIYYISPQVWAWRPGRAKKIKKY 133 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCC-ceEEEEECCceeeeCccHHHHHHHH
Confidence 34444443 2344555555666677899999987 66778889988887543 3356666682 2 2245
Q ss_pred ccEEEe--ccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHH-HHHHHHhhhhhhCCCCCCcEEEE
Q 014420 184 FDLVIT--PRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAA-LRSAASAWHEEFAPLPKPLVVVN 260 (425)
Q Consensus 184 FDlViv--P~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~-L~~a~~~~~~~l~~lp~p~vavL 260 (425)
.|.+++ |+.- +|+. ..|-++... |.| +-... .......+.+.+ ..+...++.|
T Consensus 134 ~D~ll~ifPFE~-----------------~~y~---~~g~~~~~V-GHP--l~d~~~~~~~~~~~~~~~-l~~~~~iIaL 189 (373)
T PF02684_consen 134 VDHLLVIFPFEP-----------------EFYK---KHGVPVTYV-GHP--LLDEVKPEPDRAEAREKL-LDPDKPIIAL 189 (373)
T ss_pred HhheeECCcccH-----------------HHHh---ccCCCeEEE-CCc--chhhhccCCCHHHHHHhc-CCCCCcEEEE
Confidence 576655 3321 1222 134454444 663 33221 111123334444 3345555666
Q ss_pred EcCCCCCcccCHHHHHHHHH----HHHHHHHhcC--eEEEEeCCCCcHHHHHHHHHhhC---CCCcEEEecCCCCChHHH
Q 014420 261 VGGPTGCCRYGSDLAKQLTA----HLLNVLVSCG--SIRISFSMRTPEKVSKIIIKELG---NNPKVHIWDGEEPNPHLG 331 (425)
Q Consensus 261 IGG~s~~~~~~~~~a~~L~~----~l~~l~~~~g--sl~iT~SRRTP~~~~~~L~~~l~---~~~~v~iwd~~g~NPy~~ 331 (425)
+=||.++ +.+.+.. .+..+.++.. ...|... |....+.+.+.+. ....+.+. .+.-.+
T Consensus 190 LPGSR~~------EI~rllP~~l~aa~~l~~~~p~l~fvvp~a---~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~ 256 (373)
T PF02684_consen 190 LPGSRKS------EIKRLLPIFLEAAKLLKKQRPDLQFVVPVA---PEVHEELIEEILAEYPPDVSIVII----EGESYD 256 (373)
T ss_pred eCCCCHH------HHHHHHHHHHHHHHHHHHhCCCeEEEEecC---CHHHHHHHHHHHHhhCCCCeEEEc----CCchHH
Confidence 6676652 2333332 2333333433 4444443 3333332322221 11122222 334566
Q ss_pred HHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHH-HHHHHHCCCee
Q 014420 332 HLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDF-HKSLRERGVVR 385 (425)
Q Consensus 332 ~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf-~~~L~~~G~~r 385 (425)
.|+.||+++++++.++ -|++..|+|.+|+.-- +.+.-+ .+.|.+-.++.
T Consensus 257 ~m~~ad~al~~SGTaT--LE~Al~g~P~Vv~Yk~---~~lt~~iak~lvk~~~is 306 (373)
T PF02684_consen 257 AMAAADAALAASGTAT--LEAALLGVPMVVAYKV---SPLTYFIAKRLVKVKYIS 306 (373)
T ss_pred HHHhCcchhhcCCHHH--HHHHHhCCCEEEEEcC---cHHHHHHHHHhhcCCEee
Confidence 8999999999999555 5999999999887421 334444 55666655553
No 77
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=94.82 E-value=0.17 Score=49.00 Aligned_cols=108 Identities=17% Similarity=0.059 Sum_probs=64.2
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc--CeEEEEeCCCCcHH-HHHHHHHhhCCCCcEEEecCCCCCh
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC--GSIRISFSMRTPEK-VSKIIIKELGNNPKVHIWDGEEPNP 328 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~--gsl~iT~SRRTP~~-~~~~L~~~l~~~~~v~iwd~~g~NP 328 (425)
.+.+.+++.+|.-+....+ +. +.+.+..+...+ -.+.|..+.....+ ....+ +.+....++.+...-+.+.
T Consensus 192 ~~~~~~i~~~G~~~~~K~~--~~---~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~~~ 265 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNL--ER---LLEAFARLPAKGPDPKLVIVGKRGWLNEELLARL-RELGLGDRVRFLGYVSDEE 265 (365)
T ss_pred CCCCCeEEEeCCCccccCH--HH---HHHHHHHHHHhcCCCCEEEecCCccccHHHHHHH-HHcCCCCeEEECCCCChhH
Confidence 4455677777765543322 22 334444444443 46777765433333 23333 3344434565555544567
Q ss_pred HHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCC
Q 014420 329 HLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 329 y~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~ 365 (425)
+..+|+.||.++.+.-+ -..+.||+++|+||+.-...
T Consensus 266 ~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 305 (365)
T cd03809 266 LAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNIS 305 (365)
T ss_pred HHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCC
Confidence 88999999999887432 23589999999999886543
No 78
>PRK00654 glgA glycogen synthase; Provisional
Probab=94.81 E-value=0.71 Score=48.70 Aligned_cols=114 Identities=16% Similarity=0.026 Sum_probs=63.7
Q ss_pred HHhhhhhhCCCC-CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHH---HHhhCCCCc
Q 014420 242 ASAWHEEFAPLP-KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKII---IKELGNNPK 317 (425)
Q Consensus 242 ~~~~~~~l~~lp-~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L---~~~l~~~~~ 317 (425)
.+.++.+++..+ ...+++.+|--...-.++ .|.+.+..+...+..+.|..+- ++...+.| .+.+.. +
T Consensus 268 k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~-----~li~a~~~l~~~~~~lvivG~g--~~~~~~~l~~l~~~~~~--~ 338 (466)
T PRK00654 268 KRALQERFGLPDDDAPLFAMVSRLTEQKGLD-----LVLEALPELLEQGGQLVLLGTG--DPELEEAFRALAARYPG--K 338 (466)
T ss_pred HHHHHHHhCCCCCCCcEEEEeeccccccChH-----HHHHHHHHHHhcCCEEEEEecC--cHHHHHHHHHHHHHCCC--c
Confidence 344566676443 455677777633322222 1334444444445677776642 23333333 333322 3
Q ss_pred EEEecCCCCChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcC
Q 014420 318 VHIWDGEEPNPHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 318 v~iwd~~g~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l 364 (425)
+.++.+-..+-...+|+.||.++.++-. -..+-||.++|+||++-..
T Consensus 339 v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~ 388 (466)
T PRK00654 339 VGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRT 388 (466)
T ss_pred EEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCC
Confidence 5444332222346899999999997532 2457799999999988644
No 79
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.62 E-value=0.37 Score=48.89 Aligned_cols=105 Identities=21% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCcEEEEEc-CCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHH
Q 014420 254 KPLVVVNVG-GPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGH 332 (425)
Q Consensus 254 ~p~vavLIG-G~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~ 332 (425)
+|.+++..| +.....+|..+..+.|++.|. .++-.+.++-|. .-.+..+.|.+.+... +.+-..+...-+..+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~---~~~~~Vvl~g~~-~e~e~~~~i~~~~~~~--~~l~~k~sL~e~~~l 248 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLI---AKGYQVVLFGGP-DEEERAEEIAKGLPNA--VILAGKTSLEELAAL 248 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHH---HCCCEEEEecCh-HHHHHHHHHHHhcCCc--cccCCCCCHHHHHHH
Confidence 788888888 444788899998766665543 234577788877 5556666776655432 113334455567899
Q ss_pred HHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCC
Q 014420 333 LAWADAFVVTADSISLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 333 La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~ 366 (425)
++.||. +|+.||.=| -=|.+.|+|++.+-.+.
T Consensus 249 i~~a~l-~I~~DSg~~-HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 249 IAGADL-VIGNDSGPM-HLAAALGTPTIALYGPT 280 (334)
T ss_pred HhcCCE-EEccCChHH-HHHHHcCCCEEEEECCC
Confidence 999998 788996555 44899999999876443
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.55 E-value=3.9 Score=39.47 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=47.4
Q ss_pred cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC---Ch-HHHHHHHHcCCcEEEEcC
Q 014420 289 CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD---SI-SLISEACSTGKPVYVVGA 364 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD---Sv-SMlsEA~atGkPV~v~~l 364 (425)
+..+.|-.+--........+.+......++.+...-...-+..+|+.||.++.+.- +- .-+.||.++|+||+.-..
T Consensus 197 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~ 276 (335)
T cd03802 197 GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR 276 (335)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC
Confidence 34666666554444444444443211235644433223346799999999998752 22 238899999999998765
Q ss_pred CC
Q 014420 365 ER 366 (425)
Q Consensus 365 ~~ 366 (425)
.+
T Consensus 277 ~~ 278 (335)
T cd03802 277 GA 278 (335)
T ss_pred CC
Confidence 43
No 81
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.52 E-value=4.8 Score=44.38 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcC---CChHHHHHHHHcCCcEEEEcCC
Q 014420 290 GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA---DSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 290 gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa---DSvSMlsEA~atGkPV~v~~l~ 365 (425)
-.+.|.-.----+++.+.+ +.+.-..++.+... .+....+|+.||.+|.++ ..-+-+-||.++|+||+.-...
T Consensus 430 irLvIVGdG~~~eeLk~la-~elgL~d~V~FlG~--~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG 505 (578)
T PRK15490 430 TRFVLVGDGDLRAEAQKRA-EQLGILERILFVGA--SRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG 505 (578)
T ss_pred eEEEEEeCchhHHHHHHHH-HHcCCCCcEEECCC--hhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCC
Confidence 3566665432112233333 33433345655544 344678999999999864 3455788999999999977654
No 82
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.90 E-value=1.4 Score=46.90 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=31.8
Q ss_pred CChHHHHHHHcCeEEEcC--CChHH-HHHHHHcCCc----EEEEcCCCC
Q 014420 326 PNPHLGHLAWADAFVVTA--DSISL-ISEACSTGKP----VYVVGAERC 367 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTa--DSvSM-lsEA~atGkP----V~v~~l~~~ 367 (425)
.+-+.++|+.||.+++|+ |..++ +-||+++|+| |++-...+.
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~ 394 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA 394 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCC
Confidence 445789999999999986 44444 5599999999 766654443
No 83
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.88 E-value=3.8 Score=42.77 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=29.4
Q ss_pred CChHHHHHHHc----CeEEEcCCCh---HHHHHHHHcCCcEEEEcCC
Q 014420 326 PNPHLGHLAWA----DAFVVTADSI---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 326 ~NPy~~~La~A----D~ivVTaDSv---SMlsEA~atGkPV~v~~l~ 365 (425)
.+-...+|+.| |.+|.++-+- ..+-||.++|+||++-...
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g 373 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG 373 (439)
T ss_pred HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC
Confidence 34467788877 8888765432 3589999999999887654
No 84
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=93.70 E-value=0.97 Score=44.06 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=35.3
Q ss_pred cEEEecCCC-CChHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCC
Q 014420 317 KVHIWDGEE-PNPHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 317 ~v~iwd~~g-~NPy~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~ 365 (425)
.+.+...-. ...+..+|+.||.++.+... -..+.||.++|+||+.....
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~ 297 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVG 297 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCC
Confidence 454433322 33578999999999998642 45688999999999987654
No 85
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.55 E-value=1.4 Score=44.05 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHH--HHHHHHhhCCCCcEEEecCCCCChHH
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKV--SKIIIKELGNNPKVHIWDGEEPNPHL 330 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~--~~~L~~~l~~~~~v~iwd~~g~NPy~ 330 (425)
.++.++++.||+...-+|..+...+|++.+. ..+..+.++.. +|++. .+.+.+. .+.+.+-....-.-..
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~---~~~~~ivl~~G--~~~e~~~~~~i~~~---~~~~~l~g~~sL~ela 248 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLA---PSGLRIKLPWG--AEHEEQRAKRLAEG---FPYVEVLPKLSLEQVA 248 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHH---HCCCeEEEeCC--CHHHHHHHHHHHcc---CCcceecCCCCHHHHH
Confidence 4677777888876667899988777766553 33456777643 44332 2333332 1233232233333467
Q ss_pred HHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCC
Q 014420 331 GHLAWADAFVVTADSISLISEACSTGKPVYVVGAERC 367 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~ 367 (425)
++++.||.+ ||.||.-|=- |++.|+|++.+--+..
T Consensus 249 ali~~a~l~-I~nDSGp~Hl-A~A~g~p~valfGpt~ 283 (322)
T PRK10964 249 RVLAGAKAV-VSVDTGLSHL-TAALDRPNITLYGPTD 283 (322)
T ss_pred HHHHhCCEE-EecCCcHHHH-HHHhCCCEEEEECCCC
Confidence 889999865 5778666544 8999999998765543
No 86
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=93.49 E-value=1.7 Score=45.38 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=120.2
Q ss_pred ccCCCCcEEEEe--cCcchHHHHHHHHHcCCCeEEEEecCCC---CCC-------CCccEEEe--ccCCCCCCCcccccc
Q 014420 139 YEKDGPLLVVAS--GRDTISIASSIKRLASDNVFVVQIQHPR---VHL-------NRFDLVIT--PRHDYYPLTPEGQEK 204 (425)
Q Consensus 139 l~~~~PdLVI~~--Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr---~~~-------~~FDlViv--P~HD~~~l~~~~~~~ 204 (425)
+....||++|+. ...++.++..+|+.... ..+||---|+ |.. +.+|+|.+ |+.-.+
T Consensus 81 i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~-i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~--------- 150 (381)
T COG0763 81 ILANKPDVLILIDSPDFNLRVAKKLRKAGPK-IKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAF--------- 150 (381)
T ss_pred HHhcCCCEEEEeCCCCCchHHHHHHHHhCCC-CCeEEEECcceeeechhhHHHHHHHhhHeeeecCCCHHH---------
Confidence 335779999887 66789999999987744 4477877783 222 34675544 544221
Q ss_pred chhhhhcccCCCCCCCCcEEEecCCCCcCChHH-HHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHH---
Q 014420 205 IPQFLRRWITPCEPPDGHVVLTTGALHQIDSAA-LRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTA--- 280 (425)
Q Consensus 205 ~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~-L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~--- 280 (425)
+.+ .+-+ .+-+| |++..+. +...+++|++.|+......++.++=||.++ +..++..
T Consensus 151 ----y~k-------~g~~-~~yVG--Hpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~s------EI~rl~~~f~ 210 (381)
T COG0763 151 ----YDK-------FGLP-CTYVG--HPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRS------EIRRLLPPFV 210 (381)
T ss_pred ----HHh-------cCCC-eEEeC--ChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHH------HHHHHHHHHH
Confidence 110 1112 22335 4776655 566777799999877777766666676653 2223322
Q ss_pred -HHHHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCC
Q 014420 281 -HLLNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGK 357 (425)
Q Consensus 281 -~l~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGk 357 (425)
..+++..+ +..+.+.++.+--+.......+.-.....+++-| +--...++.||+++++++-++ =|++..|.
T Consensus 211 ~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~aD~al~aSGT~t--LE~aL~g~ 284 (381)
T COG0763 211 QAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILID----GEKRKAFAAADAALAASGTAT--LEAALAGT 284 (381)
T ss_pred HHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecC----chHHHHHHHhhHHHHhccHHH--HHHHHhCC
Confidence 22223223 3578887776543333333222211112333333 344578899999999999554 59999999
Q ss_pred cEEEEcCCCCChhHHHH-HHHHHHCCCee
Q 014420 358 PVYVVGAERCTWKFTDF-HKSLRERGVVR 385 (425)
Q Consensus 358 PV~v~~l~~~~~k~~rf-~~~L~~~G~~r 385 (425)
|.+|..- .+=+..| .+.|.+-.++.
T Consensus 285 P~Vv~Yk---~~~it~~iak~lvk~~yis 310 (381)
T COG0763 285 PMVVAYK---VKPITYFIAKRLVKLPYVS 310 (381)
T ss_pred CEEEEEe---ccHHHHHHHHHhccCCccc
Confidence 9988641 1223333 44555555543
No 87
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=93.23 E-value=1.3 Score=46.38 Aligned_cols=57 Identities=25% Similarity=0.194 Sum_probs=45.5
Q ss_pred CChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeee
Q 014420 326 PNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRP 386 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~ 386 (425)
.-|+..+|..||.||+=++ .++++||...|+|++++|...-. -...+++++.|+=..
T Consensus 291 ~~p~~~~l~~ad~vI~hGG-~gtt~eaL~~gvP~vv~P~~~DQ---~~nA~rve~~G~G~~ 347 (406)
T COG1819 291 YVPQLELLPRADAVIHHGG-AGTTSEALYAGVPLVVIPDGADQ---PLNAERVEELGAGIA 347 (406)
T ss_pred CCCHHHHhhhcCEEEecCC-cchHHHHHHcCCCEEEecCCcch---hHHHHHHHHcCCcee
Confidence 3588999999999999999 89999999999999999976221 123677788777543
No 88
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=93.03 E-value=2.2 Score=40.03 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=53.0
Q ss_pred HHcCeEEEcCCChHHHH----------------HHHHcCCcEEEEcCCCCC-hhHHHHHHHHHHCCCeeecCCCCCCCCC
Q 014420 334 AWADAFVVTADSISLIS----------------EACSTGKPVYVVGAERCT-WKFTDFHKSLRERGVVRPFTGSEDMSDS 396 (425)
Q Consensus 334 a~AD~ivVTaDSvSMls----------------EA~atGkPV~v~~l~~~~-~k~~rf~~~L~~~G~~r~f~g~~~~~~~ 396 (425)
.+||.+||-.=|+|+++ ++..+++||+++|.+... ..+++-++.|.+.|+.-. + . +.
T Consensus 74 ~~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii-~-P----~~ 147 (181)
T TIGR00421 74 FPFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIIL-P-P----MP 147 (181)
T ss_pred chhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEE-C-C----CC
Confidence 37999999888887765 466789999999965433 467778999999999742 1 1 12
Q ss_pred CCCCcchHHHH----HHHHHHHHH
Q 014420 397 WSYPPLNDTAE----AASRVHEAL 416 (425)
Q Consensus 397 ~~~~PL~et~r----~A~~I~~~l 416 (425)
--|....+-+. ++.+|.+.|
T Consensus 148 g~~~~p~~~~~~~~~i~~~~l~~l 171 (181)
T TIGR00421 148 AFYTRPKSVEDMIDFIVGRVLDQL 171 (181)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHc
Confidence 23544456555 555555555
No 89
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.93 E-value=0.91 Score=44.23 Aligned_cols=106 Identities=24% Similarity=0.269 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEe-cCCCCChHHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIW-DGEEPNPHLGH 332 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iw-d~~g~NPy~~~ 332 (425)
++.+++..|++...-.|..+...+|++.|.+ ++..+.+..+.- -.+..+.+.+.+.. ..+... ......-+.++
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~---~~~~ivl~g~~~-e~~~~~~i~~~~~~-~~~~~~~~~~~l~e~~~l 195 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLA---RGARVVLTGGPA-ERELAEEIAAALGG-PRVVNLAGKTSLRELAAL 195 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHH---CCCEEEEEechh-hHHHHHHHHHhcCC-CccccCcCCCCHHHHHHH
Confidence 5677777777777788999877666655442 345677765432 12233444443321 233222 22223457899
Q ss_pred HHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCC
Q 014420 333 LAWADAFVVTADSISLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 333 La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~ 366 (425)
++.||.+| +.|| +++-=|++.|+|++.+-.+.
T Consensus 196 i~~~~l~I-~~Ds-g~~HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 196 LARADLVV-TNDS-GPMHLAAALGTPTVALFGPT 227 (279)
T ss_pred HHhCCEEE-eeCC-HHHHHHHHcCCCEEEEECCC
Confidence 99999765 6785 66666789999999886543
No 90
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=92.80 E-value=0.41 Score=45.46 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=93.6
Q ss_pred hccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCCCCCCccEEEeccCCCCCCCccccccchhhhh---cccC
Q 014420 138 TYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLR---RWIT 214 (425)
Q Consensus 138 ~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~---~~~~ 214 (425)
.+++...|+||-.-+. ....++.+.++.+..+-+..+.+ ....|+-..+..+.. ..++-+.+. ..+.
T Consensus 7 ~Lr~~~yD~vid~~~~--~~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~~-------~~~v~~~~~ll~~~~~ 76 (247)
T PF01075_consen 7 KLRKEKYDLVIDLQGS--FRSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPPN-------KHMVDRYLSLLSELLG 76 (247)
T ss_dssp HHCTSB-SEEEE-S-S--HHHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTSS-------SSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEECCCC--ccHHHHHHHHhhccccccCccch-hhhhccccccccccc-------chHHHHHHHHHHHhcC
Confidence 3566789999998554 34556666677765555544444 233444433332211 122222111 1111
Q ss_pred CCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEE
Q 014420 215 PCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRI 294 (425)
Q Consensus 215 ~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~i 294 (425)
-... . +...+ .++.+..+.+...+ ....++.+++..|++...-.|..+...+|++.|.+ .+..+.+
T Consensus 77 -~~~~--~---~~~~l-~~~~~~~~~~~~~~----~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~---~~~~vvl 142 (247)
T PF01075_consen 77 -IPYP--S---TKPEL-PLSEEEEAAARELL----KSKDKPYIGINPGASWPSKRWPAEKWAELIERLKE---RGYRVVL 142 (247)
T ss_dssp -S-SS--S---SSS-----THHHHTTHHTTT----T-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCC---CT-EEEE
T ss_pred -CCCC--C---CCcCC-cCCHHHHHHHHHhh----hhccCCeEEEeecCCCccccCCHHHHHHHHHHHHh---hCceEEE
Confidence 0000 0 00011 22333333322222 24678899999999998999999877666554321 2235555
Q ss_pred EeCCCC-cHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 295 SFSMRT-PEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 295 T~SRRT-P~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
+.+.-- -++..+.+.+.+.. ..+.+-......-+.+++..||.+ |+.| ...+-=|++.|+|++.+-.+
T Consensus 143 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~e~~ali~~a~~~-I~~D-tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 143 LGGPEEQEKEIADQIAAGLQN-PVINLAGKTSLRELAALISRADLV-IGND-TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp --SSHHHHHHHHHHHHTTHTT-TTEEETTTS-HHHHHHHHHTSSEE-EEES-SHHHHHHHHTT--EEEEESS
T ss_pred EccchHHHHHHHHHHHHhccc-ceEeecCCCCHHHHHHHHhcCCEE-EecC-ChHHHHHHHHhCCEEEEecC
Confidence 554322 12233334333322 234333333444567889999875 5778 45566699999999988544
No 91
>PRK14099 glycogen synthase; Provisional
Probab=92.67 E-value=6.7 Score=42.03 Aligned_cols=113 Identities=16% Similarity=0.038 Sum_probs=59.3
Q ss_pred HhhhhhhCCCC--CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC-CcEE
Q 014420 243 SAWHEEFAPLP--KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN-PKVH 319 (425)
Q Consensus 243 ~~~~~~l~~lp--~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v~ 319 (425)
...+++++... ...++..||--...-.+ + .|.+.+..+.+.+..+.|.-+ .+++..+.+++..... .++.
T Consensus 281 ~~l~~~~gl~~~~~~~li~~VgRL~~~KG~--d---~Li~A~~~l~~~~~~lvivG~--G~~~~~~~l~~l~~~~~~~v~ 353 (485)
T PRK14099 281 AALQARFGLDPDPDALLLGVISRLSWQKGL--D---LLLEALPTLLGEGAQLALLGS--GDAELEARFRAAAQAYPGQIG 353 (485)
T ss_pred HHHHHHcCCCcccCCcEEEEEecCCccccH--H---HHHHHHHHHHhcCcEEEEEec--CCHHHHHHHHHHHHHCCCCEE
Confidence 34556666432 33445556653322222 1 133444444444567777766 2444444444332221 2343
Q ss_pred EecCCCCChHHHHH-HHcCeEEEcCC---ChHHHHHHHHcCCcEEEEc
Q 014420 320 IWDGEEPNPHLGHL-AWADAFVVTAD---SISLISEACSTGKPVYVVG 363 (425)
Q Consensus 320 iwd~~g~NPy~~~L-a~AD~ivVTaD---SvSMlsEA~atGkPV~v~~ 363 (425)
++-+. .+....+| +.||.++..+= --..+-||.++|+|+++-.
T Consensus 354 ~~~G~-~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~ 400 (485)
T PRK14099 354 VVIGY-DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVAR 400 (485)
T ss_pred EEeCC-CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeC
Confidence 44332 34556665 67999998543 2334579999998777653
No 92
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=92.59 E-value=7.9 Score=41.09 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=128.6
Q ss_pred hhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC-----------------CCCCCccEEEeccCCCCCCCc
Q 014420 137 ETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR-----------------VHLNRFDLVITPRHDYYPLTP 199 (425)
Q Consensus 137 ~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr-----------------~~~~~FDlVivP~HD~~~l~~ 199 (425)
..++.-.||++|-+=+--=+-.+.-.++.+.+.++| |-| .-...+|+|++...+.-
T Consensus 117 rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~Lv---NaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~---- 189 (419)
T COG1519 117 RFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLV---NARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDA---- 189 (419)
T ss_pred HHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEE---eeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHH----
Confidence 345567799999887664444444445556644333 442 23567899999665542
Q ss_pred cccccchhhhhcccCCCCCCCCcEEEecCCCCcCCh--HHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHH
Q 014420 200 EGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDS--AALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQ 277 (425)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~--~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~ 277 (425)
.+|.+= -.++|..| |++-.-.. ..+....+.|+.+++.. +|. ++.+ ++ |. ++++ -
T Consensus 190 ----------~Rf~~L---Ga~~v~v~-GNlKfd~~~~~~~~~~~~~~r~~l~~~-r~v--~iaa-ST--H~-GEee--i 246 (419)
T COG1519 190 ----------QRFRSL---GAKPVVVT-GNLKFDIEPPPQLAAELAALRRQLGGH-RPV--WVAA-ST--HE-GEEE--I 246 (419)
T ss_pred ----------HHHHhc---CCcceEEe-cceeecCCCChhhHHHHHHHHHhcCCC-Cce--EEEe-cC--CC-chHH--H
Confidence 333331 12346555 88743221 23444556677776643 444 3344 44 33 3332 1
Q ss_pred HHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC-CcEEEecC-------------CCCChHHHHHHHcCeEEEcC
Q 014420 278 LTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN-PKVHIWDG-------------EEPNPHLGHLAWADAFVVTA 343 (425)
Q Consensus 278 L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v~iwd~-------------~g~NPy~~~La~AD~ivVTa 343 (425)
+++..+++.++...+++--=+|=|+..-+.-.. +... -.+.-|+. +.-.-+..+|+.||..+|=+
T Consensus 247 ~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l-~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGG 325 (419)
T COG1519 247 ILDAHQALKKQFPNLLLILVPRHPERFKAVENL-LKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGG 325 (419)
T ss_pred HHHHHHHHHhhCCCceEEEecCChhhHHHHHHH-HHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECC
Confidence 345556666666677777888999876443321 2211 12222321 01335789999999999965
Q ss_pred CChHH----HHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCC
Q 014420 344 DSISL----ISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTG 389 (425)
Q Consensus 344 DSvSM----lsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g 389 (425)
-=+.| +=|+++.|+||+.=|.- ..|....+.|.+.|.+...++
T Consensus 326 Slv~~GGHN~LEpa~~~~pvi~Gp~~---~Nf~ei~~~l~~~ga~~~v~~ 372 (419)
T COG1519 326 SLVPIGGHNPLEPAAFGTPVIFGPYT---FNFSDIAERLLQAGAGLQVED 372 (419)
T ss_pred cccCCCCCChhhHHHcCCCEEeCCcc---ccHHHHHHHHHhcCCeEEECC
Confidence 43322 56999999999754433 467777899999999988865
No 93
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=92.35 E-value=2.8 Score=42.21 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=67.0
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCC-CcHHHHHHHHHhhCCCCcEEEecC-CCCChHH
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMR-TPEKVSKIIIKELGNNPKVHIWDG-EEPNPHL 330 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRR-TP~~~~~~L~~~l~~~~~v~iwd~-~g~NPy~ 330 (425)
.++.+++..|+....-.|..+...+|++.|. ..+..+.++.+.- ...+..+.+.+.+.. +.+....+ ....-+.
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~---~~~~~ivl~g~p~~~e~~~~~~i~~~~~~-~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALH---ARGYEVVLTSGPDKDELAMVNEIAQGCQT-PRVTSLAGKLTLPQLA 255 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHH---hCCCeEEEecCCCHHHHHHHHHHHhhCCC-CcccccCCCCCHHHHH
Confidence 5678888888877788899988777765553 3345777775432 112234555554432 23322222 2234578
Q ss_pred HHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 331 GHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
++++.||.+| |.||-- +-=|++.|+|++.+--+
T Consensus 256 ali~~a~l~V-s~DSGp-~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 256 ALIDHARLFI-GVDSVP-MHMAAALGTPLVALFGP 288 (344)
T ss_pred HHHHhCCEEE-ecCCHH-HHHHHHcCCCEEEEECC
Confidence 9999998765 559655 45599999999976433
No 94
>PHA01633 putative glycosyl transferase group 1
Probab=92.13 E-value=1.8 Score=44.50 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=31.0
Q ss_pred ChHHHHHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcCC
Q 014420 327 NPHLGHLAWADAFVVTADSI---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 327 NPy~~~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l~ 365 (425)
+....+|+.||.++.++-+- ..+-||.++|+||+....+
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~ 256 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMP 256 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCC
Confidence 34679999999999875433 3588999999999887554
No 95
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=91.73 E-value=7.6 Score=41.90 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLG 331 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~ 331 (425)
++.+++.+|--+..-.++. |++.+..+.... -.+.|-.+---.+++.+.+ +.+.-...+. +-+ ..+...
T Consensus 318 ~~~~il~vGrl~~~Kg~~~-----li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i-~~~~l~~~V~-f~G--~~~~~~ 388 (500)
T TIGR02918 318 KPFSIITASRLAKEKHIDW-----LVKAVVKAKKSVPELTFDIYGEGGEKQKLQKII-NENQAQDYIH-LKG--HRNLSE 388 (500)
T ss_pred CCeEEEEEeccccccCHHH-----HHHHHHHHHhhCCCeEEEEEECchhHHHHHHHH-HHcCCCCeEE-EcC--CCCHHH
Confidence 4456666775333222222 334444444332 3555554422223333333 3332223454 433 346778
Q ss_pred HHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcCC
Q 014420 332 HLAWADAFVVTADSI---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 332 ~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l~ 365 (425)
+++.||++|.++.+- -.+-||.++|+||+.....
T Consensus 389 ~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~ 425 (500)
T TIGR02918 389 VYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVN 425 (500)
T ss_pred HHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCC
Confidence 999999999988643 3478999999999987654
No 96
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.06 E-value=3.1 Score=41.26 Aligned_cols=104 Identities=19% Similarity=0.148 Sum_probs=67.0
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHH--HHHHHHHhhCCCCcEEEecCCCCChH
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEK--VSKIIIKELGNNPKVHIWDGEEPNPH 329 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~--~~~~L~~~l~~~~~v~iwd~~g~NPy 329 (425)
.+++.+++..|++...-.|..+...++++.|. .++..+.++.+ +|++ ..+.+.+.+.. ..+-....-.-+
T Consensus 177 ~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~---~~~~~~vl~~g--~~~e~~~~~~i~~~~~~---~~l~g~~sL~el 248 (319)
T TIGR02193 177 LPAPYAVLLHATSRDDKTWPEERWRELARLLL---ARGLQIVLPWG--NDAEKQRAERIAEALPG---AVVLPKMSLAEV 248 (319)
T ss_pred CCCCEEEEEeCCCcccCCCCHHHHHHHHHHHH---HCCCeEEEeCC--CHHHHHHHHHHHhhCCC---CeecCCCCHHHH
Confidence 46889999999988888899988767766553 33446666643 4443 33445443322 222222334456
Q ss_pred HHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 330 LGHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
.++++.||.+ ||.||.-| -=|++.|+|++.+--+
T Consensus 249 ~ali~~a~l~-I~~DSgp~-HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 249 AALLAGADAV-VGVDTGLT-HLAAALDKPTVTLYGA 282 (319)
T ss_pred HHHHHcCCEE-EeCCChHH-HHHHHcCCCEEEEECC
Confidence 7888888865 67896554 5588999999876543
No 97
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=91.05 E-value=3.5 Score=44.60 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=27.7
Q ss_pred CChHHHHHHHcCeEEEcC--CChHHHH-HHHHcCC
Q 014420 326 PNPHLGHLAWADAFVVTA--DSISLIS-EACSTGK 357 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTa--DSvSMls-EA~atGk 357 (425)
.+-+.++|..||.++||+ |-.|+++ |+++++.
T Consensus 372 ~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~ 406 (487)
T TIGR02398 372 YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQG 406 (487)
T ss_pred HHHHHHHHHhCCEEEECccccccCcchhhHHhhhc
Confidence 345789999999999997 7799988 9999977
No 98
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=90.95 E-value=6.6 Score=38.68 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=72.6
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh-cCeE-EEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHH
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS-CGSI-RISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHL 330 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~-~gsl-~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~ 330 (425)
.++.+++.+-.. ..++++..+.+++.+..++++ +..+ .++...-...+..+.|.+.+.....+ ....+.+-+.
T Consensus 171 ~~~~i~i~~r~~---~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i--~~~~~~~e~~ 245 (298)
T TIGR03609 171 PEPVIVVSLRPW---PLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEV--LSPLDPEELL 245 (298)
T ss_pred CCCeEEEEECCC---CcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEE--EecCCHHHHH
Confidence 356676666331 124555556677777777765 3344 45554333445566777766543333 3332333467
Q ss_pred HHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHH
Q 014420 331 GHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSL 378 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L 378 (425)
+.++.||.+|.+-= -+||. |.++|+|++.+.+. .|++.|++.+
T Consensus 246 ~~i~~~~~vI~~Rl-H~~I~-A~~~gvP~i~i~y~---~K~~~~~~~~ 288 (298)
T TIGR03609 246 GLFASARLVIGMRL-HALIL-AAAAGVPFVALSYD---PKVRAFAADA 288 (298)
T ss_pred HHHhhCCEEEEech-HHHHH-HHHcCCCEEEeecc---HHHHHHHHHh
Confidence 89999998877665 66665 89999999988654 6777776654
No 99
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=90.00 E-value=10 Score=39.92 Aligned_cols=156 Identities=20% Similarity=0.271 Sum_probs=89.4
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHH-HHhhCCCCcEE--EecCC--CC
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKII-IKELGNNPKVH--IWDGE--EP 326 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L-~~~l~~~~~v~--iwd~~--g~ 326 (425)
+...++++.|-|+...+ .. .+.+..+.+.+..+.+..|+=- .++.... -+.+..++ ++ .|+.. +.
T Consensus 4 l~~k~IllgvTGsiaa~-k~-------~~lv~~L~~~g~~V~vv~T~~A-~~fi~~~~l~~l~~~~-V~~~~~~~~~~~~ 73 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAY-KA-------LELVRRLRKAGADVRVVMTEAA-KKFVTPLTFQALSGNP-VSTDLWDPAAEAA 73 (399)
T ss_pred CCCCeEEEEEeCHHHHH-HH-------HHHHHHHHhCCCEEEEEECHhH-HHHHhHHHHHHhhCCc-eEccccccccCCC
Confidence 45667888888877655 11 2333333445556666665421 2222111 12233322 32 24321 22
Q ss_pred ChHHHHHHHcCeEEEcCCChHHHHHH-------------HHcCCcEEEEcCCC-C---ChhHHHHHHHHHHCCCeeecCC
Q 014420 327 NPHLGHLAWADAFVVTADSISLISEA-------------CSTGKPVYVVGAER-C---TWKFTDFHKSLRERGVVRPFTG 389 (425)
Q Consensus 327 NPy~~~La~AD~ivVTaDSvSMlsEA-------------~atGkPV~v~~l~~-~---~~k~~rf~~~L~~~G~~r~f~g 389 (425)
-.+.++..|||.+||-.=|+|.|+-. +++++||+++|.-. . +.-+++-++.|.+.|+.-. +-
T Consensus 74 ~~hi~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii-~P 152 (399)
T PRK05579 74 MGHIELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEII-GP 152 (399)
T ss_pred cchhhcccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEE-CC
Confidence 24667778999999988887777643 34589999999432 2 2347778999999998742 21
Q ss_pred CCCCC--CCCCCCcchHHHHHHHHHHHHHHh
Q 014420 390 SEDMS--DSWSYPPLNDTAEAASRVHEALAE 418 (425)
Q Consensus 390 ~~~~~--~~~~~~PL~et~r~A~~I~~~l~~ 418 (425)
....+ .....-.+-|-++|...|.+.|..
T Consensus 153 ~~g~la~~~~g~gr~~~~~~I~~~~~~~~~~ 183 (399)
T PRK05579 153 ASGRLACGDVGPGRMAEPEEIVAAAERALSP 183 (399)
T ss_pred CCccccCCCcCCCCCCCHHHHHHHHHHHhhh
Confidence 11111 112224577888888888888754
No 100
>PLN02316 synthase/transferase
Probab=89.63 E-value=6 Score=46.52 Aligned_cols=198 Identities=16% Similarity=0.083 Sum_probs=104.4
Q ss_pred CCCcEEEEecCcchHHHHHHHHHcC------CC-eEEEEecCCC-------CCCCCccEEEeccCCCCCCCccccccchh
Q 014420 142 DGPLLVVASGRDTISIASSIKRLAS------DN-VFVVQIQHPR-------VHLNRFDLVITPRHDYYPLTPEGQEKIPQ 207 (425)
Q Consensus 142 ~~PdLVI~~Gr~t~~~~~~lrr~~~------~~-~~vV~i~~Pr-------~~~~~FDlVivP~HD~~~l~~~~~~~~~~ 207 (425)
..||||-+=-..|..++.++++.++ .+ ++++| +.. ......|.|++..+..- + ++
T Consensus 708 ~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~TiH--nl~~~~n~lk~~l~~AD~ViTVS~tya------~-EI-- 776 (1036)
T PLN02316 708 FHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFTIH--NLEFGANHIGKAMAYADKATTVSPTYS------R-EV-- 776 (1036)
T ss_pred CCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEEeC--CcccchhHHHHHHHHCCEEEeCCHHHH------H-HH--
Confidence 4699999998889888888877532 21 23333 221 12356799998766531 0 00
Q ss_pred hhhcc-cCCCCCCCCcEEEecCCCCcCChHH-----------------H----HHHHHhhhhhhCCC-CCCcEEEEEcC-
Q 014420 208 FLRRW-ITPCEPPDGHVVLTTGALHQIDSAA-----------------L----RSAASAWHEEFAPL-PKPLVVVNVGG- 263 (425)
Q Consensus 208 ~~~~~-~~~~~~~~~NVl~T~Galh~v~~~~-----------------L----~~a~~~~~~~l~~l-p~p~vavLIGG- 263 (425)
...+ +. +...++. |.+|.|+.+. + ..++..++.+|+.. +...+++.||=
T Consensus 777 -~~~~~l~---~~~~Kl~---vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL 849 (1036)
T PLN02316 777 -SGNSAIA---PHLYKFH---GILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRL 849 (1036)
T ss_pred -HhccCcc---cccCCEE---EEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEecc
Confidence 0111 11 0112222 2333443321 1 12344466777643 23456667774
Q ss_pred -CCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCc--HHHHHHHHHhhCC--CCcEEEecCCCCChHH-HHHHHcC
Q 014420 264 -PTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTP--EKVSKIIIKELGN--NPKVHIWDGEEPNPHL-GHLAWAD 337 (425)
Q Consensus 264 -~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP--~~~~~~L~~~l~~--~~~v~iwd~~g~NPy~-~~La~AD 337 (425)
..|... .|.+.+..++..+.++.|.-+---+ ++....+.+.+.. ...+.+..+ -+.+.. .+|+.||
T Consensus 850 ~~qKGvd-------lLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~-~de~lah~iyaaAD 921 (1036)
T PLN02316 850 THQKGIH-------LIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLT-YDEPLSHLIYAGAD 921 (1036)
T ss_pred ccccCHH-------HHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEec-CCHHHHHHHHHhCc
Confidence 333321 2334444555556778776653212 1233344444431 124544422 133443 7999999
Q ss_pred eEEEcCCCh---HHHHHHHHcCCcEEEEcCC
Q 014420 338 AFVVTADSI---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 338 ~ivVTaDSv---SMlsEA~atGkPV~v~~l~ 365 (425)
.+++.+=+- -.+-||.++|+|+++-...
T Consensus 922 iflmPS~~EP~GLvqLEAMa~GtppVvs~vG 952 (1036)
T PLN02316 922 FILVPSIFEPCGLTQLTAMRYGSIPVVRKTG 952 (1036)
T ss_pred EEEeCCcccCccHHHHHHHHcCCCeEEEcCC
Confidence 999975332 3477999999999886443
No 101
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.25 E-value=6.9 Score=39.08 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=64.9
Q ss_pred CCCcEEEEEcCCC-CCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecC-CCCChHH
Q 014420 253 PKPLVVVNVGGPT-GCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDG-EEPNPHL 330 (425)
Q Consensus 253 p~p~vavLIGG~s-~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~-~g~NPy~ 330 (425)
.++.+++..|++. ..-.|..+...+|++.+. ..+..+.++.+.- -.+..+.|.+.... .+.-..+ ..-.-..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~---~~~~~ivl~G~~~-e~~~~~~i~~~~~~--~~~~l~g~~sL~el~ 246 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLI---DQGYQVVLFGSAK-DHPAGNEIEALLPG--ELRNLAGETSLDEAV 246 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHH---HCCCEEEEEEChh-hHHHHHHHHHhCCc--ccccCCCCCCHHHHH
Confidence 4788888888864 678899988777765543 3345777776541 12233455444322 2221222 2233467
Q ss_pred HHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 331 GHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
++++.||.+ |+.||.-| -=|++.|+|++.+--+
T Consensus 247 ali~~a~l~-I~~DSGp~-HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 247 DLIALAKAV-VTNDSGLM-HVAAALNRPLVALYGS 279 (334)
T ss_pred HHHHhCCEE-EeeCCHHH-HHHHHcCCCEEEEECC
Confidence 888888875 57896554 5589999999876443
No 102
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.82 E-value=4 Score=46.69 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=26.0
Q ss_pred hHHHHHHHcCeEEEcC--CChHHH-HHHHHcCCc
Q 014420 328 PHLGHLAWADAFVVTA--DSISLI-SEACSTGKP 358 (425)
Q Consensus 328 Py~~~La~AD~ivVTa--DSvSMl-sEA~atGkP 358 (425)
-+.++|+.||.+|+|+ |-.+++ -||+++|+|
T Consensus 368 el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p 401 (797)
T PLN03063 368 YLCALYAITDVMLVTSLRDGMNLVSYEFVACQKA 401 (797)
T ss_pred HHHHHHHhCCEEEeCccccccCcchhhHheeecC
Confidence 4689999999999996 445654 599999998
No 103
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=88.74 E-value=1.5 Score=37.21 Aligned_cols=76 Identities=21% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHH-HHHHHHHhc--CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC----ChHHHH
Q 014420 278 LTA-HLLNVLVSC--GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD----SISLIS 350 (425)
Q Consensus 278 L~~-~l~~l~~~~--gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD----SvSMls 350 (425)
+.+ .+.++.+.. -++.|... -|++ +++. ..+++.+.+.- .-+..+|+.||..+.+.+ +-+.+.
T Consensus 20 li~~~~~~l~~~~p~~~l~i~G~--~~~~----l~~~--~~~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~ 89 (135)
T PF13692_consen 20 LIEAALERLKEKHPDIELIIIGN--GPDE----LKRL--RRPNVRFHGFV--EELPEILAAADVGLIPSRFNEGFPNKLL 89 (135)
T ss_dssp HHH-HHHHHHHHSTTEEEEEECE--SS-H----HCCH--HHCTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHH
T ss_pred hhhhHHHHHHHHCcCEEEEEEeC--CHHH----HHHh--cCCCEEEcCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHH
Confidence 444 444444432 46666555 3342 4332 12478777664 358999999999999764 358899
Q ss_pred HHHHcCCcEEEEc
Q 014420 351 EACSTGKPVYVVG 363 (425)
Q Consensus 351 EA~atGkPV~v~~ 363 (425)
|++++|+||+.-.
T Consensus 90 e~~~~G~pvi~~~ 102 (135)
T PF13692_consen 90 EAMAAGKPVIASD 102 (135)
T ss_dssp HHHCTT--EEEEH
T ss_pred HHHHhCCCEEECC
Confidence 9999999999864
No 104
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=88.72 E-value=7.4 Score=39.30 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=63.7
Q ss_pred CCCcEEEEEcCCC-CCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC--CcEEEecC-CCCCh
Q 014420 253 PKPLVVVNVGGPT-GCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN--PKVHIWDG-EEPNP 328 (425)
Q Consensus 253 p~p~vavLIGG~s-~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~--~~v~iwd~-~g~NP 328 (425)
.++.+++..|+.. ..-.|..+...+|++.|. ..+..+.++.+. ...+..+.+.+.+... .++....+ ..-..
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~---~~~~~vvl~Gg~-~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~e 254 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLI---DEGYQVVLFGSA-KDHEAGNEILAALNTEQQAWCRNLAGETQLEQ 254 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHH---HCCCeEEEEeCH-HhHHHHHHHHHhcccccccceeeccCCCCHHH
Confidence 5788888888764 567899987766765543 334477777543 1112234444433321 12222222 23345
Q ss_pred HHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcC
Q 014420 329 HLGHLAWADAFVVTADSISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 329 y~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l 364 (425)
..++++.||. +||.||-- +-=|++.|+|++.+--
T Consensus 255 l~ali~~a~l-~I~nDTGp-~HlAaA~g~P~valfG 288 (348)
T PRK10916 255 AVILIAACKA-IVTNDSGL-MHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHHHhCCE-EEecCChH-HHHHHHhCCCEEEEEC
Confidence 6788888885 56889554 5569999999986543
No 105
>PLN02275 transferase, transferring glycosyl groups
Probab=88.35 E-value=5.4 Score=40.62 Aligned_cols=71 Identities=20% Similarity=0.022 Sum_probs=45.4
Q ss_pred eEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecC-CCCChHHHHHHHcCeEEEcCCC------hHHHHHHHHcCCcEEEEc
Q 014420 291 SIRISFSMRTPEKVSKIIIKELGNNPKVHIWDG-EEPNPHLGHLAWADAFVVTADS------ISLISEACSTGKPVYVVG 363 (425)
Q Consensus 291 sl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~-~g~NPy~~~La~AD~ivVTaDS------vSMlsEA~atGkPV~v~~ 363 (425)
.+.|.-.=-.-+++.+.+++ +.- .++.++.+ -+.+.+..+|+.||.+|+...| -+-+.||.++|+||+...
T Consensus 263 ~l~ivG~G~~~~~l~~~~~~-~~l-~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~ 340 (371)
T PLN02275 263 LFIITGKGPQKAMYEEKISR-LNL-RHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS 340 (371)
T ss_pred EEEEEeCCCCHHHHHHHHHH-cCC-CceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEec
Confidence 56665543222444444433 332 35666654 4567789999999999863222 235889999999998764
No 106
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=88.30 E-value=11 Score=38.16 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=66.7
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCC-cHHHHHHHHHhhCCCCcEEEecC-CCCChHH
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRT-PEKVSKIIIKELGNNPKVHIWDG-EEPNPHL 330 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRT-P~~~~~~L~~~l~~~~~v~iwd~-~g~NPy~ 330 (425)
+++.+++..|+....-.|..+...++++.|. +.+..+.++.+.=- ..+..+.|.+.+.. +.+....+ ..-.-..
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~---~~~~~vvl~ggp~e~e~~~~~~i~~~~~~-~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQ---ARGYEVVLTSGPDKDDLACVNEIAQGCQT-PPVTALAGKTTFPELG 257 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHH---HCCCeEEEEcCCChHHHHHHHHHHHhcCC-CccccccCCCCHHHHH
Confidence 5788888999888888899987766665543 34457777754311 11222444443322 23333333 2334567
Q ss_pred HHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 331 GHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
++++.||.+ |+.||--| -=|++.|+|++.+--+
T Consensus 258 ali~~a~l~-v~nDSGp~-HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 258 ALIDHAQLF-IGVDSAPA-HIAAAVNTPLICLFGA 290 (352)
T ss_pred HHHHhCCEE-EecCCHHH-HHHHHcCCCEEEEECC
Confidence 888888865 67896665 4588999999876543
No 107
>PLN02501 digalactosyldiacylglycerol synthase
Probab=87.87 E-value=14 Score=42.13 Aligned_cols=38 Identities=21% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcCCC
Q 014420 329 HLGHLAWADAFVVTADSI---SLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 329 y~~~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l~~ 366 (425)
...+|+.+|.+|.++-+- .-+-||.++|+||+....++
T Consensus 612 ~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG 652 (794)
T PLN02501 612 ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPS 652 (794)
T ss_pred HHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCC
Confidence 347999999999876543 34779999999999987654
No 108
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=87.77 E-value=10 Score=35.44 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=80.8
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHH--HHHHhhCCCCcE--EEecCCCCC--hH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSK--IIIKELGNNPKV--HIWDGEEPN--PH 329 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~--~L~~~l~~~~~v--~iwd~~g~N--Py 329 (425)
+++|.|.|+++.+. .. +.++.+.+.+.++.+..|+-- .++.. .+ +.+...+ + .+|+..+.+ .+
T Consensus 2 ~I~lgvtGs~~a~~-~~-------~ll~~L~~~g~~V~vi~T~~A-~~fi~~~~l-~~l~~~~-v~~~~~~~~~~~~~~h 70 (177)
T TIGR02113 2 KILLAVTGSIAAYK-AA-------DLTSQLTKLGYDVTVLMTQAA-TQFITPLTL-QVLSKNP-VHLDVMDEHDPKVINH 70 (177)
T ss_pred EEEEEEcCHHHHHH-HH-------HHHHHHHHCCCEEEEEEChHH-HhhccHhhH-HHHhCCC-eEeeccccccCCCccc
Confidence 46777778776552 11 222333334556777665421 11111 12 2233322 2 234322111 24
Q ss_pred HHHHHHcCeEEEcCCChHHHH---------------HHHHcCCcEEEEcCC-C---CChhHHHHHHHHHHCCCeee--cC
Q 014420 330 LGHLAWADAFVVTADSISLIS---------------EACSTGKPVYVVGAE-R---CTWKFTDFHKSLRERGVVRP--FT 388 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvSMls---------------EA~atGkPV~v~~l~-~---~~~k~~rf~~~L~~~G~~r~--f~ 388 (425)
.+.-.+||.+||-.=|+|+++ +|.-.++||+++|.= . .+.-+++-++.|.+.|+.-. -.
T Consensus 71 i~l~~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 71 IELAKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred ceechhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 455568999999876666554 322237999999932 2 23356777999999998642 22
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHH
Q 014420 389 GSEDMSDSWSYPPLNDTAEAASRVHEA 415 (425)
Q Consensus 389 g~~~~~~~~~~~PL~et~r~A~~I~~~ 415 (425)
|.. -....-.-++-|-++|.++|.+.
T Consensus 151 g~l-a~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 151 SLL-ACGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred Ccc-cCCCccccCCCCHHHHHHHHHHh
Confidence 221 01223345677778888888764
No 109
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.68 E-value=4.2 Score=43.17 Aligned_cols=41 Identities=17% Similarity=-0.008 Sum_probs=30.0
Q ss_pred EEEecCC-CCChHHHHHHHcCeEEEcCCChH--H-HHHHHHcCCc
Q 014420 318 VHIWDGE-EPNPHLGHLAWADAFVVTADSIS--L-ISEACSTGKP 358 (425)
Q Consensus 318 v~iwd~~-g~NPy~~~La~AD~ivVTaDSvS--M-lsEA~atGkP 358 (425)
+.++.+. ..+-+.++|+.||++++|+-+-. + +-||+++|+|
T Consensus 342 v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p 386 (460)
T cd03788 342 VRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDD 386 (460)
T ss_pred EEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecC
Confidence 4444332 34467899999999999875543 3 4699999999
No 110
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=87.38 E-value=12 Score=35.16 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=85.2
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHH--HHHHhhCCCCcEEE--ecCCC--CChH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSK--IIIKELGNNPKVHI--WDGEE--PNPH 329 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~--~L~~~l~~~~~v~i--wd~~g--~NPy 329 (425)
+++|.|-|+.+.+. .. +.++.+.+.+.++.+..|+-- +++.. .+ +.+.++ .++. |.... ...+
T Consensus 3 ~Ill~vtGsiaa~~-~~-------~li~~L~~~g~~V~vv~T~~A-~~fi~~~~l-~~l~~~-~v~~~~~~~~~~~~~~h 71 (182)
T PRK07313 3 NILLAVSGSIAAYK-AA-------DLTSQLTKRGYQVTVLMTKAA-TKFITPLTL-QVLSKN-PVHLDVMDEHDPKLMNH 71 (182)
T ss_pred EEEEEEeChHHHHH-HH-------HHHHHHHHCCCEEEEEEChhH-HHHcCHHHH-HHHhCC-ceEeccccccccCCccc
Confidence 46777878777663 12 223333344556666665421 22221 12 223232 2311 11111 1234
Q ss_pred HHHHHHcCeEEEcCCChHHHHHH-------------HHc--CCcEEEEcCC-C---CChhHHHHHHHHHHCCCeeec--C
Q 014420 330 LGHLAWADAFVVTADSISLISEA-------------CST--GKPVYVVGAE-R---CTWKFTDFHKSLRERGVVRPF--T 388 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvSMlsEA-------------~at--GkPV~v~~l~-~---~~~k~~rf~~~L~~~G~~r~f--~ 388 (425)
.+.-.+||.++|-.=|+|.|+-. ++. ++||+++|.- . .+.=+++-++.|.+.|+.-.= .
T Consensus 72 i~l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~ 151 (182)
T PRK07313 72 IELAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKE 151 (182)
T ss_pred cccccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCC
Confidence 56668999999977777665432 344 8999999952 1 223467779999999986422 2
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 014420 389 GSEDMSDSWSYPPLNDTAEAASRVHEALAE 418 (425)
Q Consensus 389 g~~~~~~~~~~~PL~et~r~A~~I~~~l~~ 418 (425)
|.. -....-|-.+.|-+++.+.|.+.|.+
T Consensus 152 g~l-a~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 152 GLL-ACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred Ccc-ccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 210 01234577778889999999887754
No 111
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=87.27 E-value=3.5 Score=43.52 Aligned_cols=95 Identities=25% Similarity=0.340 Sum_probs=59.9
Q ss_pred CeEEEEeCC---CCcHHHHHHHHHhhCCCCcEEEecCCC-------CC-------hHHHHHHHc--CeEEEcCCChHHHH
Q 014420 290 GSIRISFSM---RTPEKVSKIIIKELGNNPKVHIWDGEE-------PN-------PHLGHLAWA--DAFVVTADSISLIS 350 (425)
Q Consensus 290 gsl~iT~SR---RTP~~~~~~L~~~l~~~~~v~iwd~~g-------~N-------Py~~~La~A--D~ivVTaDSvSMls 350 (425)
|-++||+-- -.|++..+.+.+.++..+.-++|-.++ .| |-.++|+.. +++|.-|+ .+.+.
T Consensus 277 ~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG-~~s~~ 355 (500)
T PF00201_consen 277 GVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGG-LNSTQ 355 (500)
T ss_dssp EEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHTSTTEEEEEES---HHHHH
T ss_pred CEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccccccccceEEEeccccchhhhhcccceeeeeccc-cchhh
Confidence 457776432 256666666767777666666774322 33 557999865 45666777 88899
Q ss_pred HHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecC
Q 014420 351 EACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 351 EA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~ 388 (425)
||+..|+|++.+|.-+ +--...+.+++.|....++
T Consensus 356 Ea~~~gvP~l~~P~~~---DQ~~na~~~~~~G~g~~l~ 390 (500)
T PF00201_consen 356 EALYHGVPMLGIPLFG---DQPRNAARVEEKGVGVVLD 390 (500)
T ss_dssp HHHHCT--EEE-GCST---THHHHHHHHHHTTSEEEEG
T ss_pred hhhhccCCccCCCCcc---cCCccceEEEEEeeEEEEE
Confidence 9999999999999763 3334467788889887663
No 112
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=87.25 E-value=23 Score=34.29 Aligned_cols=153 Identities=18% Similarity=0.267 Sum_probs=88.3
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEE----EecC----C
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVH----IWDG----E 324 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~----iwd~----~ 324 (425)
.++.+.|.|.|+-..|+..+ |++.| . ++.++.+..|+-. .++... ..+.....++ +|+. +
T Consensus 18 ~~k~IllgVtGSIAAyk~~~-----lvr~L---~-~g~~V~VvmT~~A-~~FI~p--~~l~~~~~v~td~~~~~~~~~~~ 85 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGN-----LCHCF---S-EWAEVRAVVTKAS-LHFIDR--ASLPKDVTLYTDEDEWSSWNKIG 85 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHH-----HHHHh---c-CCCeEEEEEChhH-hhhcCH--HHcCCCCcEEeCcccccccccCC
Confidence 35567888888666554422 22332 2 3447777665432 222221 1122111222 3421 2
Q ss_pred CCChHHHHHHHcCeEEEcCCChHHHH---------------HHHHcCCcEEEEcC-CCC---ChhHHHHHHHHHHCCCee
Q 014420 325 EPNPHLGHLAWADAFVVTADSISLIS---------------EACSTGKPVYVVGA-ERC---TWKFTDFHKSLRERGVVR 385 (425)
Q Consensus 325 g~NPy~~~La~AD~ivVTaDSvSMls---------------EA~atGkPV~v~~l-~~~---~~k~~rf~~~L~~~G~~r 385 (425)
+.-++..+..|||.++|-.=|+|.|+ +|+..++||+++|. ... ..=+++-++.|.+.|+.-
T Consensus 86 ~~~~HI~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~v 165 (209)
T PLN02496 86 DSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL 165 (209)
T ss_pred CCcchhHhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEE
Confidence 33457888899999999877766655 33335899999994 322 224566689999999864
Q ss_pred --ecCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 014420 386 --PFTGSEDMSDSWSYPPLNDTAEAASRVHEALAE 418 (425)
Q Consensus 386 --~f~g~~~~~~~~~~~PL~et~r~A~~I~~~l~~ 418 (425)
|-.|.. -......-.+-|-+.|...|.+.|..
T Consensus 166 i~P~~g~l-Acg~~G~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 166 IPPVTKRL-ACGDYGNGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred ECCCcCcc-cCCCcCCCCCCCHHHHHHHHHHHHhh
Confidence 223321 11223445677778888888888865
No 113
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.22 E-value=24 Score=36.47 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=105.7
Q ss_pred hccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCC------CCCCCCccEEEeccCCCCCCCccccccchhhhhc
Q 014420 138 TYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP------RVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRR 211 (425)
Q Consensus 138 ~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~P------r~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~ 211 (425)
+.....||+.|+-+ .+.+..+..-.+. +-.+..-+| ++-.-..|.||+|.--.- +++ .
T Consensus 79 i~~~~kpdv~i~~~---s~~l~rvafgLg~-psIi~~D~ehA~~qnkl~~Pla~~ii~P~~~~~-----------~~~-~ 142 (346)
T COG1817 79 IIAEFKPDVAIGKH---SPELPRVAFGLGI-PSIIFVDNEHAEAQNKLTLPLADVIITPEAIDE-----------EEL-L 142 (346)
T ss_pred HHhhcCCceEeecC---CcchhhHHhhcCC-ceEEecCChhHHHHhhcchhhhhheecccccch-----------HHH-H
Confidence 44568899999955 3444444444454 445555556 444556788888865321 000 1
Q ss_pred ccCCCCCCCCcEEEe-c-----CCCC--cCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHH
Q 014420 212 WITPCEPPDGHVVLT-T-----GALH--QIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLL 283 (425)
Q Consensus 212 ~~~~~~~~~~NVl~T-~-----Galh--~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~ 283 (425)
|+- .++|-+.+ . -+.. .-+++.|. +|+....-..+|+===+.+++-++.+........+-
T Consensus 143 ~~G----~~p~~i~~~~giae~~~v~~f~pd~evlk--------eLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li 210 (346)
T COG1817 143 DFG----ADPNKISGYNGIAELANVYGFVPDPEVLK--------ELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLI 210 (346)
T ss_pred HhC----CCccceecccceeEEeecccCCCCHHHHH--------HcCCCCCCceEEEeeccccceeeccccchhhHHHHH
Confidence 111 22332211 1 1112 12345554 455444323444444454444444443332334554
Q ss_pred HHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEc
Q 014420 284 NVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVG 363 (425)
Q Consensus 284 ~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~ 363 (425)
..+...| ..+-+|-|-.++ .+++ +.. + + ..+..+-.+.+|--||.++ ++|.+|-.||+..|.|++-..
T Consensus 211 ~~l~k~g-iV~ipr~~~~~e---ife~-~~n---~-i-~pk~~vD~l~Llyya~lvi--g~ggTMarEaAlLGtpaIs~~ 278 (346)
T COG1817 211 KELKKYG-IVLIPREKEQAE---IFEG-YRN---I-I-IPKKAVDTLSLLYYATLVI--GAGGTMAREAALLGTPAISCY 278 (346)
T ss_pred HHHHhCc-EEEecCchhHHH---HHhh-hcc---c-c-CCcccccHHHHHhhhheee--cCCchHHHHHHHhCCceEEec
Confidence 5555556 333333333222 2222 211 1 1 2223445566888888655 455899999999999997554
Q ss_pred CCCCChhHHHHHHHHHHCCCeeec
Q 014420 364 AERCTWKFTDFHKSLRERGVVRPF 387 (425)
Q Consensus 364 l~~~~~k~~rf~~~L~~~G~~r~f 387 (425)
|+..--+. +.|.+.|..-.+
T Consensus 279 -pGkll~vd---k~lie~G~~~~s 298 (346)
T COG1817 279 -PGKLLAVD---KYLIEKGLLYHS 298 (346)
T ss_pred -CCcccccc---HHHHhcCceeec
Confidence 65443333 667888886443
No 114
>PRK05920 aromatic acid decarboxylase; Validated
Probab=87.21 E-value=18 Score=34.85 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=51.5
Q ss_pred HcCeEEEcCCChHHHH----------------HHHHcCCcEEEEcCCCC-ChhHHHHHHHHHHCCCeeecCCCCCCCCCC
Q 014420 335 WADAFVVTADSISLIS----------------EACSTGKPVYVVGAERC-TWKFTDFHKSLRERGVVRPFTGSEDMSDSW 397 (425)
Q Consensus 335 ~AD~ivVTaDSvSMls----------------EA~atGkPV~v~~l~~~-~~k~~rf~~~L~~~G~~r~f~g~~~~~~~~ 397 (425)
+||.++|-.=|+|+|+ +++..++||+++|.+-. ..-+++-++.|.+.|+.- ++ . ..-
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~i-i~-P----~~g 166 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRETPLSLIHLENMLKLAEAGAII-LP-A----IPA 166 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEE-eC-C----ccc
Confidence 8999999877777664 56778999999996433 345777899999999973 22 1 122
Q ss_pred CCCcchHHHHHH-HHHHHHHHhcC
Q 014420 398 SYPPLNDTAEAA-SRVHEALAERG 420 (425)
Q Consensus 398 ~~~PL~et~r~A-~~I~~~l~~~~ 420 (425)
-|..-++.++.+ -.+-+.|+.-|
T Consensus 167 ~y~~p~~~~~~~~f~~~~~l~~lg 190 (204)
T PRK05920 167 FYHKPQTIDDLVDFVVARILDLLG 190 (204)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhcC
Confidence 354334433333 34444555555
No 115
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=86.91 E-value=31 Score=37.38 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHH-HhhCCCCcEE--EecCCC--C
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIII-KELGNNPKVH--IWDGEE--P 326 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~-~~l~~~~~v~--iwd~~g--~ 326 (425)
+...++++.|+|+...|. ..+.+..+.+.+..+.+..|+- -.++..-+. +.+..+ .++ +|+... .
T Consensus 68 l~~k~IllgVtGsIAayk--------a~~lvr~L~k~G~~V~VvmT~s-A~~fv~p~~~~~ls~~-~V~~d~~~~~~~~~ 137 (475)
T PRK13982 68 LASKRVTLIIGGGIAAYK--------ALDLIRRLKERGAHVRCVLTKA-AQQFVTPLTASALSGQ-RVYTDLFDPESEFD 137 (475)
T ss_pred cCCCEEEEEEccHHHHHH--------HHHHHHHHHhCcCEEEEEECcC-HHHHhhHHHHHHhcCC-ceEecCCCcccccC
Confidence 456778899999776651 1233333344555776666542 122222211 223332 232 122211 1
Q ss_pred ChHHHHHHHcCeEEEcCCChHHHHHH-------------HHcCCcEEEEcCCCCC----hhHHHHHHHHHHCCCeee--c
Q 014420 327 NPHLGHLAWADAFVVTADSISLISEA-------------CSTGKPVYVVGAERCT----WKFTDFHKSLRERGVVRP--F 387 (425)
Q Consensus 327 NPy~~~La~AD~ivVTaDSvSMlsEA-------------~atGkPV~v~~l~~~~----~k~~rf~~~L~~~G~~r~--f 387 (425)
-.+..+-.|||.+||-.=|+|.|+-. .++++||+++|..... .=+++-++.|.+.|+.-. -
T Consensus 138 ~~Hi~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~ 217 (475)
T PRK13982 138 AGHIRLARDCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPN 217 (475)
T ss_pred ccchhhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCC
Confidence 13456667999999988777776543 3468999999965543 346777999999998743 2
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 014420 388 TGSEDMSDSWSYPPLNDTAEAASRVHEALA 417 (425)
Q Consensus 388 ~g~~~~~~~~~~~PL~et~r~A~~I~~~l~ 417 (425)
.|...-+.....-.+-|-++|..+|.+.|.
T Consensus 218 ~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 218 AGEMAERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCccccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 221000012333467788888888888775
No 116
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=86.19 E-value=9.7 Score=38.84 Aligned_cols=99 Identities=19% Similarity=0.089 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHH-HHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHL-LNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLG 331 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l-~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~ 331 (425)
..+++.+|.-+..- |.+....++..+ ..+... +-.+.|..+. |.+ .+++ +...+++.+... .+....
T Consensus 224 ~~~ilf~G~l~~~k--~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g--~~~---~~~~-l~~~~~V~~~G~--v~~~~~ 293 (397)
T TIGR03087 224 KRVLVFTGAMDYWP--NIDAVVWFAERVFPAVRARRPAAEFYIVGAK--PSP---AVRA-LAALPGVTVTGS--VADVRP 293 (397)
T ss_pred CcEEEEEEecCCcc--CHHHHHHHHHHHHHHHHHHCCCcEEEEECCC--ChH---HHHH-hccCCCeEEeee--cCCHHH
Confidence 35667777644322 333332232222 222222 3467776653 222 2322 333356766544 234678
Q ss_pred HHHHcCeEEEcCC----ChHHHHHHHHcCCcEEEEc
Q 014420 332 HLAWADAFVVTAD----SISLISEACSTGKPVYVVG 363 (425)
Q Consensus 332 ~La~AD~ivVTaD----SvSMlsEA~atGkPV~v~~ 363 (425)
+|+.||.+|+..- .-+-+-||.++|+||+.-+
T Consensus 294 ~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~ 329 (397)
T TIGR03087 294 YLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASP 329 (397)
T ss_pred HHHhCCEEEecccccCCcccHHHHHHHcCCCEEecC
Confidence 9999999998742 1223899999999998864
No 117
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=85.41 E-value=24 Score=37.07 Aligned_cols=155 Identities=13% Similarity=0.224 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHH-HHhhCCCCc-EEEecCCCCC-hHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKII-IKELGNNPK-VHIWDGEEPN-PHL 330 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L-~~~l~~~~~-v~iwd~~g~N-Py~ 330 (425)
..++++.|-|+.+.+. .. +.+..+.+.+..+.+..|+-- .++.... -+.+..++- .-+|+..... ++.
T Consensus 3 ~k~IllgiTGSiaa~~-~~-------~ll~~L~~~g~~V~vv~T~~A-~~fv~~~~l~~~~~~~v~~~~~~~~~~~~~hi 73 (390)
T TIGR00521 3 NKKILLGVTGGIAAYK-TV-------ELVRELVRQGAEVKVIMTEAA-KKFITPLTLEALSGHKVVTELWGPIEHNALHI 73 (390)
T ss_pred CCEEEEEEeCHHHHHH-HH-------HHHHHHHhCCCEEEEEECHhH-HHHHHHHHHHHhhCCceeehhccccccccchh
Confidence 4567888888777643 11 233333444557777776542 2222211 112223221 1234332222 255
Q ss_pred HHHHHcCeEEEcCCChHHHHHH-------------HHcCCcEEEEcCCC----CChhHHHHHHHHHHCCCeee--cCCCC
Q 014420 331 GHLAWADAFVVTADSISLISEA-------------CSTGKPVYVVGAER----CTWKFTDFHKSLRERGVVRP--FTGSE 391 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsEA-------------~atGkPV~v~~l~~----~~~k~~rf~~~L~~~G~~r~--f~g~~ 391 (425)
++..+||.+||-.=|+|.|+-. .++-+|++++|.-. .+.=+++-+..|.+.|+.-. -.|..
T Consensus 74 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ 153 (390)
T TIGR00521 74 DLAKWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLL 153 (390)
T ss_pred hcccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCccc
Confidence 6667999999988888777632 23349999999622 12356777999999998632 21210
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHh
Q 014420 392 DMSDSWSYPPLNDTAEAASRVHEALAE 418 (425)
Q Consensus 392 ~~~~~~~~~PL~et~r~A~~I~~~l~~ 418 (425)
. +...---.+.|-+++...|.+.|..
T Consensus 154 a-c~~~g~g~~~~~~~i~~~v~~~~~~ 179 (390)
T TIGR00521 154 A-CGDEGKGRLAEPETIVKAAEREFSP 179 (390)
T ss_pred c-cccccCCCCCCHHHHHHHHHHHHhh
Confidence 0 0011113346667788888877754
No 118
>PLN02846 digalactosyldiacylglycerol synthase
Probab=84.89 E-value=30 Score=37.31 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=49.8
Q ss_pred HHHHHHHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChH---HHHHH
Q 014420 278 LTAHLLNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSIS---LISEA 352 (425)
Q Consensus 278 L~~~l~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvS---MlsEA 352 (425)
|.+.+..+... +-.+.|..+-=--+++.+ +.+.+.- ...++.+ ......+++.+|.+|-++.+-. -+-||
T Consensus 246 Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~-~a~~l~l--~~~vf~G--~~~~~~~~~~~DvFv~pS~~Et~g~v~lEA 320 (462)
T PLN02846 246 LLKLLHKHQKELSGLEVDLYGSGEDSDEVKA-AAEKLEL--DVRVYPG--RDHADPLFHDYKVFLNPSTTDVVCTTTAEA 320 (462)
T ss_pred HHHHHHHHHhhCCCeEEEEECCCccHHHHHH-HHHhcCC--cEEEECC--CCCHHHHHHhCCEEEECCCcccchHHHHHH
Confidence 33444444332 235666666522223333 3233321 2445555 3344579999999999877643 46799
Q ss_pred HHcCCcEEEEcCCC
Q 014420 353 CSTGKPVYVVGAER 366 (425)
Q Consensus 353 ~atGkPV~v~~l~~ 366 (425)
.++|+||+....+.
T Consensus 321 mA~G~PVVa~~~~~ 334 (462)
T PLN02846 321 LAMGKIVVCANHPS 334 (462)
T ss_pred HHcCCcEEEecCCC
Confidence 99999999987553
No 119
>PRK14098 glycogen synthase; Provisional
Probab=84.48 E-value=15 Score=39.33 Aligned_cols=115 Identities=16% Similarity=-0.007 Sum_probs=63.6
Q ss_pred HhhhhhhCCC--CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC-CcEE
Q 014420 243 SAWHEEFAPL--PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN-PKVH 319 (425)
Q Consensus 243 ~~~~~~l~~l--p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v~ 319 (425)
...+.+++.. ++..+++.+|--...- +-+. |.+.+..+...+..+.|.-+ .++...+.|++..... .++.
T Consensus 293 ~~l~~~lgl~~~~~~~~i~~vgRl~~~K--G~d~---li~a~~~l~~~~~~lvivG~--G~~~~~~~l~~l~~~~~~~V~ 365 (489)
T PRK14098 293 KALLEEVGLPFDEETPLVGVIINFDDFQ--GAEL---LAESLEKLVELDIQLVICGS--GDKEYEKRFQDFAEEHPEQVS 365 (489)
T ss_pred HHHHHHhCCCCccCCCEEEEeccccccC--cHHH---HHHHHHHHHhcCcEEEEEeC--CCHHHHHHHHHHHHHCCCCEE
Confidence 3445556543 3445677777433221 1121 33444444444567777765 2333344443322211 2565
Q ss_pred EecCCCCChHHHHHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcC
Q 014420 320 IWDGEEPNPHLGHLAWADAFVVTADSI---SLISEACSTGKPVYVVGA 364 (425)
Q Consensus 320 iwd~~g~NPy~~~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l 364 (425)
+..+-...-...+|+.||.++..+-+- ...-||.++|+|+++...
T Consensus 366 ~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~ 413 (489)
T PRK14098 366 VQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAG 413 (489)
T ss_pred EEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecC
Confidence 554322223568999999999976542 346699999999887654
No 120
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=83.85 E-value=51 Score=37.95 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCCcEEEEecCcchHHHHHHHHHcCCC
Q 014420 142 DGPLLVVASGRDTISIASSIKRLASDN 168 (425)
Q Consensus 142 ~~PdLVI~~Gr~t~~~~~~lrr~~~~~ 168 (425)
..||+|+|--..+..++..+++..+..
T Consensus 384 ~~pDlIHahy~d~glva~lla~~lgVP 410 (784)
T TIGR02470 384 GKPDLIIGNYSDGNLVASLLARKLGVT 410 (784)
T ss_pred CCCCEEEECCCchHHHHHHHHHhcCCC
Confidence 479999999999999999999999863
No 121
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=82.80 E-value=42 Score=31.89 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=80.9
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCc---------HHHHHHHHHhhCCCCcE-EEecCCC
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTP---------EKVSKIIIKELGNNPKV-HIWDGEE 325 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP---------~~~~~~L~~~l~~~~~v-~iwd~~g 325 (425)
++++-|-|+++.|.- ..+.++.+.+.+..+.+..|+--- ++....|.... ..+.+ .+++.+.
T Consensus 2 ~I~lgITGs~~a~~a-------~~~ll~~L~~~g~~V~vI~S~~A~~~~~~~g~~~~~i~~l~~~t-g~~v~~~~~~~~~ 73 (187)
T TIGR02852 2 RIGFGLTGSHCTLEA-------VMPQLEKLVDEGAEVTPIVSETVQTTDTRFGKGADWIKKIEEIT-GRPAINTIVEAEP 73 (187)
T ss_pred EEEEEEecHHHHHHH-------HHHHHHHHHhCcCEEEEEEchhHHHHHHHcCChHHHHHHHHHHH-CCCCEEECCCCcc
Confidence 366777777665521 113444445556677777766431 12333443322 22222 2222222
Q ss_pred CChHHHHHHHcCeEEEcCCChHHHHHH------------H-H---cCCcEEEEcCCCCC-hhHHHHHHHHH-HCCC-eee
Q 014420 326 PNPHLGHLAWADAFVVTADSISLISEA------------C-S---TGKPVYVVGAERCT-WKFTDFHKSLR-ERGV-VRP 386 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTaDSvSMlsEA------------~-a---tGkPV~v~~l~~~~-~k~~rf~~~L~-~~G~-~r~ 386 (425)
..| =.++|.+||-.=|++.|+-. + + .++||++.|.-... +.+.+-++.|. ..|+ +-+
T Consensus 74 ~~~----s~~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~~Ni~~L~~~~g~~~v~ 149 (187)
T TIGR02852 74 FGP----KVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAISTNDALGLNAVNLMRLLNTKNIYFVP 149 (187)
T ss_pred cCC----chhhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCHHHHHHHHHcCCEEEEe
Confidence 222 26899999877666655432 1 2 38999999865432 44557788874 8887 468
Q ss_pred cCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 014420 387 FTGSEDMSDSWSYPPLNDTAEAASRVHEALAE 418 (425)
Q Consensus 387 f~g~~~~~~~~~~~PL~et~r~A~~I~~~l~~ 418 (425)
|.+.. . ...+-.=+.+.+.+.+-|.++|.-
T Consensus 150 f~qd~-~-~~k~~s~~~~~~~~~~~~~~a~~~ 179 (187)
T TIGR02852 150 FGQDD-P-FKKPNSLVAKMDYLIPTIEEALQG 179 (187)
T ss_pred ecCCC-C-CCCchhHHhhHHhhHHHHHHHHhC
Confidence 86432 1 111122245667777777777743
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=81.91 E-value=5.9 Score=42.67 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc-C-eEEEEeCCCCcHHHHHHHHHhhC----CCCcEEEecCCCC
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC-G-SIRISFSMRTPEKVSKIIIKELG----NNPKVHIWDGEEP 326 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~-g-sl~iT~SRRTP~~~~~~L~~~l~----~~~~v~iwd~~g~ 326 (425)
|... +++|--|..++++++..+.. .++++.. . .+++-. .|....+.|++.+. +..++.+-+....
T Consensus 282 p~d~--vvF~~fn~~~KI~p~~l~~W----~~IL~~vP~S~L~L~~---~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~ 352 (468)
T PF13844_consen 282 PEDA--VVFGSFNNLFKISPETLDLW----ARILKAVPNSRLWLLR---FPASGEARLRRRFAAHGVDPDRIIFSPVAPR 352 (468)
T ss_dssp -SSS--EEEEE-S-GGG--HHHHHHH----HHHHHHSTTEEEEEEE---TSTTHHHHHHHHHHHTTS-GGGEEEEE---H
T ss_pred CCCc--eEEEecCccccCCHHHHHHH----HHHHHhCCCcEEEEee---CCHHHHHHHHHHHHHcCCChhhEEEcCCCCH
Confidence 4444 78899999999999865444 4455543 3 444432 22223333433332 2134543333223
Q ss_pred ChHHHHHHHcCeEEEcC--CChHHHHHHHHcCCcEEEEcCCCCChhHHH
Q 014420 327 NPHLGHLAWADAFVVTA--DSISLISEACSTGKPVYVVGAERCTWKFTD 373 (425)
Q Consensus 327 NPy~~~La~AD~ivVTa--DSvSMlsEA~atGkPV~v~~l~~~~~k~~r 373 (425)
.-|+..+..+|.++=|- .......||+..|.||+.++-+....|+..
T Consensus 353 ~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~a 401 (468)
T PF13844_consen 353 EEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGA 401 (468)
T ss_dssp HHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHH
T ss_pred HHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHH
Confidence 34777788899999886 446889999999999999988776666664
No 123
>PLN02207 UDP-glycosyltransferase
Probab=81.59 E-value=39 Score=36.39 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=50.6
Q ss_pred hHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHH-CCCeeecCCCCCCCCCCCCCcchH
Q 014420 328 PHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRE-RGVVRPFTGSEDMSDSWSYPPLND 404 (425)
Q Consensus 328 Py~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~-~G~~r~f~g~~~~~~~~~~~PL~e 404 (425)
|-.+.|+.... ||.=++ -|.+.||++.|+|++.+|+-.-....+ +.+.+ .|+...+.... .+....+-+
T Consensus 341 PQ~~IL~H~~vg~FvTH~G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na---~~~~~~~gvGv~~~~~~----~~~~~~~v~ 412 (468)
T PLN02207 341 PQVEILAHKAVGGFVSHCG-WNSIVESLWFGVPIVTWPMYAEQQLNA---FLMVKELKLAVELKLDY----RVHSDEIVN 412 (468)
T ss_pred CHHHHhcccccceeeecCc-cccHHHHHHcCCCEEecCccccchhhH---HHHHHHhCceEEEeccc----ccccCCccc
Confidence 56778888555 777777 888999999999999998754433333 33333 56654332100 011122335
Q ss_pred HHHHHHHHHHHHH
Q 014420 405 TAEAASRVHEALA 417 (425)
Q Consensus 405 t~r~A~~I~~~l~ 417 (425)
.+.+++.|++.+.
T Consensus 413 ~e~i~~av~~vm~ 425 (468)
T PLN02207 413 ANEIETAIRCVMN 425 (468)
T ss_pred HHHHHHHHHHHHh
Confidence 6677777777775
No 124
>PLN02562 UDP-glycosyltransferase
Probab=81.23 E-value=59 Score=34.65 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=38.9
Q ss_pred hHHHHHHHcC--eEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHH-CCCeeec
Q 014420 328 PHLGHLAWAD--AFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRE-RGVVRPF 387 (425)
Q Consensus 328 Py~~~La~AD--~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~-~G~~r~f 387 (425)
|...+|+..+ .+|.=++ .+.+.||++.|+|++++|+-.-....+++ +.+ .|+...+
T Consensus 337 PQ~~iL~h~~v~~fvtH~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~---~~~~~g~g~~~ 395 (448)
T PLN02562 337 PQLEVLKHQAVGCYLTHCG-WNSTMEAIQCQKRLLCYPVAGDQFVNCAY---IVDVWKIGVRI 395 (448)
T ss_pred CHHHHhCCCccceEEecCc-chhHHHHHHcCCCEEeCCcccchHHHHHH---HHHHhCceeEe
Confidence 7888999877 4555555 99999999999999999976544343433 333 3554444
No 125
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=78.78 E-value=11 Score=36.62 Aligned_cols=82 Identities=22% Similarity=0.122 Sum_probs=48.6
Q ss_pred HHHHHHHHhc--CeEEEEeCCCCcHHH-HHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcC
Q 014420 280 AHLLNVLVSC--GSIRISFSMRTPEKV-SKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTG 356 (425)
Q Consensus 280 ~~l~~l~~~~--gsl~iT~SRRTP~~~-~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atG 356 (425)
+.|.++++.. ..+.|..=+-..... ...+.+.. ...++.+.+. ......+|..||.|++-.- ++--||+..|
T Consensus 144 ~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~Ll~~s~~VvtinS--tvGlEAll~g 218 (269)
T PF05159_consen 144 DMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELP-NLPNVVIIDD--DVNLYELLEQSDAVVTINS--TVGLEALLHG 218 (269)
T ss_pred HHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhh-cCCCeEEECC--CCCHHHHHHhCCEEEEECC--HHHHHHHHcC
Confidence 4455555543 466666544110000 12333322 2345555544 3355688999999877654 5778999999
Q ss_pred CcEEEEcCCC
Q 014420 357 KPVYVVGAER 366 (425)
Q Consensus 357 kPV~v~~l~~ 366 (425)
|||+++..+.
T Consensus 219 kpVi~~G~~~ 228 (269)
T PF05159_consen 219 KPVIVFGRAF 228 (269)
T ss_pred CceEEecCcc
Confidence 9999998653
No 126
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=78.45 E-value=43 Score=31.66 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=52.0
Q ss_pred HcCeEEEcCCChHHHHH----------------HHHcCCcEEEEcCCCCC-hhHHHHHHHHHHCCCee--ecCCCCCCCC
Q 014420 335 WADAFVVTADSISLISE----------------ACSTGKPVYVVGAERCT-WKFTDFHKSLRERGVVR--PFTGSEDMSD 395 (425)
Q Consensus 335 ~AD~ivVTaDSvSMlsE----------------A~atGkPV~v~~l~~~~-~k~~rf~~~L~~~G~~r--~f~g~~~~~~ 395 (425)
+||.+||-.=|+|+|+- +...++|++++|.+-.. .-+++-++.|.+.|+.- |..|. +
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~---~- 153 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPVPAF---Y- 153 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECCCccc---c-
Confidence 89999998888887763 44578999999954332 35777799999999863 33332 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHH
Q 014420 396 SWSYPPLNDTAEAASRVHEALA 417 (425)
Q Consensus 396 ~~~~~PL~et~r~A~~I~~~l~ 417 (425)
.-+-...+-.+-++.++.+.|.
T Consensus 154 a~p~~~~~~~~~~v~~~~~~l~ 175 (185)
T PRK06029 154 HRPQTLEDMVDQTVGRVLDLFG 175 (185)
T ss_pred cCCCCHHHHHHHHHHHHHHhcC
Confidence 1111223555666666666654
No 127
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=77.97 E-value=5.1 Score=37.51 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHHHcCeEEEcCCChHHHHHHHHc---------CCcEEEEcCCCCChhHHHHHHHHHHCCCeee
Q 014420 329 HLGHLAWADAFVVTADSISLISEACST---------GKPVYVVGAERCTWKFTDFHKSLRERGVVRP 386 (425)
Q Consensus 329 y~~~La~AD~ivVTaDSvSMlsEA~at---------GkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~ 386 (425)
-..++..||++|+=++..-.+.|...+ .|||+++...+.-..+..|++.+.+.|.+..
T Consensus 90 k~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~ 156 (178)
T TIGR00730 90 KAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISE 156 (178)
T ss_pred HHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCH
Confidence 357888999999999999999998544 8999999876655678888899999998754
No 128
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=77.89 E-value=21 Score=36.84 Aligned_cols=105 Identities=16% Similarity=0.036 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc----CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC----GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPH 329 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~----gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy 329 (425)
++..++-+|--...-.++ .+.+.+..+.... -.|.+..+-.--++..+.+. .+.....+.+...-..+..
T Consensus 229 ~~~~il~~Grl~~~Kg~~-----~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~-~~~~~~~V~f~G~v~~~e~ 302 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVD-----LIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAE-SKPENISVNFTGELSNSEV 302 (407)
T ss_pred CCEEEEEeeccccccCHH-----HHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHH-hcCCCceEEEecCCChHHH
Confidence 455566666544333222 2334444444332 13344444222222333332 2223335544333333456
Q ss_pred HHHHHH--cCeEEEcCCChH---HHHHHHHcCCcEEEEcC
Q 014420 330 LGHLAW--ADAFVVTADSIS---LISEACSTGKPVYVVGA 364 (425)
Q Consensus 330 ~~~La~--AD~ivVTaDSvS---MlsEA~atGkPV~v~~l 364 (425)
..+|+. ||.++-+..+.+ .+.||.++|+||+.-..
T Consensus 303 ~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v 342 (407)
T cd04946 303 YKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV 342 (407)
T ss_pred HHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC
Confidence 778875 677777776643 48999999999987543
No 129
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=77.88 E-value=9.3 Score=35.52 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=51.7
Q ss_pred EEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHH-HHHHHHHCCCee
Q 014420 318 VHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTD-FHKSLRERGVVR 385 (425)
Q Consensus 318 v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~r-f~~~L~~~G~~r 385 (425)
+..+++ ..-+...+..||.||.-++ +..+-|-...|||.+|+.-+.--..||. .++.|.+.|++-
T Consensus 65 id~y~f--~psl~e~I~~AdlVIsHAG-aGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~ 130 (170)
T KOG3349|consen 65 IDGYDF--SPSLTEDIRSADLVISHAG-AGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLY 130 (170)
T ss_pred EEEEec--CccHHHHHhhccEEEecCC-cchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEE
Confidence 444555 4457888999999999999 6668899999999999987655455554 599999999983
No 130
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.46 E-value=33 Score=32.82 Aligned_cols=125 Identities=13% Similarity=0.085 Sum_probs=71.7
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCC---------CcHHHHHHHHHhhCCCCcE-EEec
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMR---------TPEKVSKIIIKELGNNPKV-HIWD 322 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRR---------TP~~~~~~L~~~l~~~~~v-~iwd 322 (425)
...++++-|.|+.+.|.-.. +.++.+.+.+..+.+..|+- ||.+....+.... .++-+ .+|+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~-------~lir~L~k~G~~V~vv~T~aA~~~~~~~~~~~~~~~~l~~ls-~~~v~~~~~~ 75 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVM-------PEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKKIEEIT-GNKVINTIVE 75 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHH-------HHHHHHHhCcCEEEEEECHhHHHHhhhcCChHHHHHHHHHHH-CCCcEEecCC
Confidence 35678888889877663122 23333344556666666552 2333333454432 32211 1222
Q ss_pred CCCCChHHHHHHHcCeEEEcCCChHHHHHH------------HH----cCCcEEEEcCCCCC-hhHHHHHHHHHH-CCCe
Q 014420 323 GEEPNPHLGHLAWADAFVVTADSISLISEA------------CS----TGKPVYVVGAERCT-WKFTDFHKSLRE-RGVV 384 (425)
Q Consensus 323 ~~g~NPy~~~La~AD~ivVTaDSvSMlsEA------------~a----tGkPV~v~~l~~~~-~k~~rf~~~L~~-~G~~ 384 (425)
. +..+.-.+||.+||-.=|+|.|+-. +. .++||+++|.-... +.+.+-++.|.+ .|+.
T Consensus 76 ---~-~~isls~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~~ni~~L~~~~g~~ 151 (196)
T PRK08305 76 ---A-EPLGPKKLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNAKNLGRLLNTKNIY 151 (196)
T ss_pred ---C-ccCccccccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCHHHHHHHHhcCCEE
Confidence 1 2233346899999987777766532 22 27999999964432 555677888885 6763
Q ss_pred -eecCC
Q 014420 385 -RPFTG 389 (425)
Q Consensus 385 -r~f~g 389 (425)
-+|.+
T Consensus 152 ~i~~~~ 157 (196)
T PRK08305 152 FVPFGQ 157 (196)
T ss_pred EEecCC
Confidence 57754
No 131
>PLN02554 UDP-glycosyltransferase family protein
Probab=76.51 E-value=1.1e+02 Score=32.98 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=38.3
Q ss_pred hHHHHHH--HcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeec
Q 014420 328 PHLGHLA--WADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPF 387 (425)
Q Consensus 328 Py~~~La--~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f 387 (425)
|...+|+ ..+.+|.=++ .|.+.||++.|+|++++|+-.-. +..-....++.|+...+
T Consensus 351 PQ~~iL~H~~v~~FvtH~G-~nS~~Ea~~~GVP~l~~P~~~DQ--~~Na~~~v~~~g~Gv~l 409 (481)
T PLN02554 351 PQVAVLAKPAIGGFVTHCG-WNSILESLWFGVPMAAWPLYAEQ--KFNAFEMVEELGLAVEI 409 (481)
T ss_pred CHHHHhCCcccCcccccCc-cchHHHHHHcCCCEEecCccccc--hhhHHHHHHHhCceEEe
Confidence 6778884 4445666666 88899999999999999875322 11112335666776555
No 132
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=76.21 E-value=8 Score=34.19 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=46.4
Q ss_pred HHHHHHcCeEEEcCCChHHHHHHHHc---------CC-cEEEEcCCCCChhHHHHHHHHHHCCCeee
Q 014420 330 LGHLAWADAFVVTADSISLISEACST---------GK-PVYVVGAERCTWKFTDFHKSLRERGVVRP 386 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvSMlsEA~at---------Gk-PV~v~~l~~~~~k~~rf~~~L~~~G~~r~ 386 (425)
.-++..||++|+-++..-.+.|...+ .+ ||+++...+.-..+-.+++.+.+.|.+.+
T Consensus 48 ~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~ 114 (133)
T PF03641_consen 48 EIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISP 114 (133)
T ss_dssp HHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSH
T ss_pred HHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCH
Confidence 57888999999999999998887543 45 99999987765677788889999998754
No 133
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=74.94 E-value=62 Score=34.59 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=35.4
Q ss_pred ChHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHH
Q 014420 327 NPHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTD 373 (425)
Q Consensus 327 NPy~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~r 373 (425)
=|...+|+..+. +|.-++ -|.+.||++.|+|++++|+-.-..-.++
T Consensus 332 ~PQ~~iL~h~~v~~fvtH~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~ 379 (451)
T PLN02410 332 APQKEVLSHPAVGGFWSHCG-WNSTLESIGEGVPMICKPFSSDQKVNAR 379 (451)
T ss_pred CCHHHHhCCCccCeeeecCc-hhHHHHHHHcCCCEEeccccccCHHHHH
Confidence 477889988544 888888 8889999999999999987644333333
No 134
>PLN02939 transferase, transferring glycosyl groups
Probab=71.77 E-value=74 Score=37.50 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=64.8
Q ss_pred HHhhhhhhCCCC---CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCc--HHHHHHHHHhhCCCC
Q 014420 242 ASAWHEEFAPLP---KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTP--EKVSKIIIKELGNNP 316 (425)
Q Consensus 242 ~~~~~~~l~~lp---~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP--~~~~~~L~~~l~~~~ 316 (425)
..+++.+|+..+ ...+++.||=-...-.++ . |.+.+..++..+..+.|..+--.+ ++....+.+.+....
T Consensus 763 K~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiD--l---LleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~d 837 (977)
T PLN02939 763 KAALRKQLGLSSADASQPLVGCITRLVPQKGVH--L---IRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNN 837 (977)
T ss_pred hHHHHHHhCCCcccccceEEEEeecCCcccChH--H---HHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 445677777432 335666777533222222 1 233333444445677777653222 123344444454334
Q ss_pred cEEEecCCCCCh-HHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCC
Q 014420 317 KVHIWDGEEPNP-HLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 317 ~v~iwd~~g~NP-y~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~ 365 (425)
++.+..+ -.+. ...+|+.||.++..+-. --.+-||.++|+|+++....
T Consensus 838 rV~FlG~-~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vG 889 (977)
T PLN02939 838 NIRLILK-YDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTG 889 (977)
T ss_pred eEEEEec-cCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCC
Confidence 5644332 1222 34799999999986532 24578999999999876543
No 135
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=70.16 E-value=35 Score=29.64 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEE----ecCCCCChHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHI----WDGEEPNPHLG 331 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~i----wd~~g~NPy~~ 331 (425)
++++.+.|+...+. .. +.+..+.+.+..+.+..| +...+.+.........++. |+....-...+
T Consensus 2 ~i~l~vtGs~~~~~-~~-------~~l~~L~~~g~~v~vv~S----~~A~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 69 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-AP-------DLLRRLKRAGWEVRVVLS----PSAERFVTPEGLTGEPVYTDWDTWDRGDPAEHIE 69 (129)
T ss_dssp EEEEEE-SSGGGGG-HH-------HHHHHHHTTTSEEEEEES----HHHHHHSHHHGHCCSCEECTHCTCSTTTTTCHHH
T ss_pred EEEEEEECHHHHHH-HH-------HHHHHHhhCCCEEEEEEC----CcHHHHhhhhccccchhhhccccCCCCCCcCccc
Confidence 57788888777664 23 233333444568888887 4555665554411123321 11222223455
Q ss_pred HHHHcCeEEEcCCChHHHH----------------HHHHcCCcEEEEcCC
Q 014420 332 HLAWADAFVVTADSISLIS----------------EACSTGKPVYVVGAE 365 (425)
Q Consensus 332 ~La~AD~ivVTaDSvSMls----------------EA~atGkPV~v~~l~ 365 (425)
...++|.+||-.=|.|.++ ++.-.++||+++|..
T Consensus 70 ~~~~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~m 119 (129)
T PF02441_consen 70 LSRWADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAM 119 (129)
T ss_dssp HHHTESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEE
T ss_pred ccccCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeC
Confidence 6889999998665555443 233348999999854
No 136
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=70.08 E-value=12 Score=38.16 Aligned_cols=149 Identities=20% Similarity=0.114 Sum_probs=78.0
Q ss_pred CCccEEEeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhh--hhhhCCCCCCcEEE
Q 014420 182 NRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAW--HEEFAPLPKPLVVV 259 (425)
Q Consensus 182 ~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~--~~~l~~lp~p~vav 259 (425)
+.+|+|++..+.- .+.+.. .++|+.+. +|.++.+........- ...+... ...+++
T Consensus 152 ~~ad~vi~~S~~l---------------~~~~~~---~~~~i~~i---~ngvd~~~f~~~~~~~~~~~~~~~~-~~~~i~ 209 (373)
T cd04950 152 KRADLVFTTSPSL---------------YEAKRR---LNPNVVLV---PNGVDYEHFAAARDPPPPPADLAAL-PRPVIG 209 (373)
T ss_pred HhCCEEEECCHHH---------------HHHHhh---CCCCEEEc---ccccCHHHhhcccccCCChhHHhcC-CCCEEE
Confidence 4579999876653 122221 22555443 3567766553221110 0112222 344667
Q ss_pred EEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeE
Q 014420 260 NVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAF 339 (425)
Q Consensus 260 LIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~i 339 (425)
-+|.-+. ..+.+.. ..+.+. ..+.++.|...--...+ ... +...+++++......+-+..+|+.||..
T Consensus 210 y~G~l~~--~~d~~ll----~~la~~-~p~~~~vliG~~~~~~~-~~~----~~~~~nV~~~G~~~~~~l~~~l~~~Dv~ 277 (373)
T cd04950 210 YYGAIAE--WLDLELL----EALAKA-RPDWSFVLIGPVDVSID-PSA----LLRLPNVHYLGPKPYKELPAYLAGFDVA 277 (373)
T ss_pred EEecccc--ccCHHHH----HHHHHH-CCCCEEEEECCCcCccC-hhH----hccCCCEEEeCCCCHHHHHHHHHhCCEE
Confidence 7887665 3444332 222211 12346666543201111 111 2223578766554455678999999999
Q ss_pred EEcCC--------ChHHHHHHHHcCCcEEEEcC
Q 014420 340 VVTAD--------SISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 340 vVTaD--------SvSMlsEA~atGkPV~v~~l 364 (425)
++.-- +-+=+.|+.++|+||+.-+.
T Consensus 278 l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~ 310 (373)
T cd04950 278 ILPFRLNELTRATSPLKLFEYLAAGKPVVATPL 310 (373)
T ss_pred ecCCccchhhhcCCcchHHHHhccCCCEEecCc
Confidence 98632 12348999999999987543
No 137
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=70.05 E-value=62 Score=38.00 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=26.1
Q ss_pred CChHHHHHHHcCeEEEcC--CChHHHH-HHHHcCC
Q 014420 326 PNPHLGHLAWADAFVVTA--DSISLIS-EACSTGK 357 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTa--DSvSMls-EA~atGk 357 (425)
..-+.++|..||+++||+ |-.|+++ |+++++.
T Consensus 450 ~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~ 484 (934)
T PLN03064 450 FHALCALYAVTDVALVTSLRDGMNLVSYEFVACQD 484 (934)
T ss_pred HHHHHHHHHhCCEEEeCccccccCchHHHHHHhhc
Confidence 345789999999999997 5577766 9999965
No 138
>PLN02448 UDP-glycosyltransferase family protein
Probab=69.47 E-value=11 Score=40.04 Aligned_cols=80 Identities=16% Similarity=0.041 Sum_probs=47.8
Q ss_pred hHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHC-CCeeecCCCCCCCCCCCCCcchH
Q 014420 328 PHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRER-GVVRPFTGSEDMSDSWSYPPLND 404 (425)
Q Consensus 328 Py~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~-G~~r~f~g~~~~~~~~~~~PL~e 404 (425)
|...+|+.++. +|.-++ .+.+.||++.|+|+.++|.-.-..... +.+++. |+-..+.... .....-.
T Consensus 332 pQ~~iL~h~~v~~fvtHgG-~nS~~eal~~GvP~l~~P~~~DQ~~na---~~v~~~~g~G~~~~~~~------~~~~~~~ 401 (459)
T PLN02448 332 DQLKVLCHSSVGGFWTHCG-WNSTLEAVFAGVPMLTFPLFWDQPLNS---KLIVEDWKIGWRVKREV------GEETLVG 401 (459)
T ss_pred CHHHHhccCccceEEecCc-hhHHHHHHHcCCCEEeccccccchhhH---HHHHHHhCceEEEeccc------ccCCcCc
Confidence 66788888876 555555 999999999999999999754333333 444442 3333221100 0011223
Q ss_pred HHHHHHHHHHHHH
Q 014420 405 TAEAASRVHEALA 417 (425)
Q Consensus 405 t~r~A~~I~~~l~ 417 (425)
.+.+++.|++.|.
T Consensus 402 ~~~l~~av~~vl~ 414 (459)
T PLN02448 402 REEIAELVKRFMD 414 (459)
T ss_pred HHHHHHHHHHHhc
Confidence 5566666766664
No 139
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=69.02 E-value=27 Score=39.43 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=25.6
Q ss_pred CChHHHHHHHcCeEEEcCCC--hHH-HHHHHHcCCc
Q 014420 326 PNPHLGHLAWADAFVVTADS--ISL-ISEACSTGKP 358 (425)
Q Consensus 326 ~NPy~~~La~AD~ivVTaDS--vSM-lsEA~atGkP 358 (425)
..-+.++|+.||.+++|+=. .++ +-||+++|+|
T Consensus 352 ~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~ 387 (726)
T PRK14501 352 FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTD 387 (726)
T ss_pred HHHHHHHHHhccEEEecccccccCcccceEEEEcCC
Confidence 44578999999999998743 333 5699999775
No 140
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=67.72 E-value=1e+02 Score=28.27 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=44.2
Q ss_pred eEEEEeCCCCc-HHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcC--CChHH-HHHHHHcCCcEEEEcCC
Q 014420 291 SIRISFSMRTP-EKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA--DSISL-ISEACSTGKPVYVVGAE 365 (425)
Q Consensus 291 sl~iT~SRRTP-~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa--DSvSM-lsEA~atGkPV~v~~l~ 365 (425)
.+.+..+-..+ +...+.+ +.+.....+.+-...+.+-+..+++.||.++... ++..+ +.||.++|+||+.-..+
T Consensus 232 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~ 309 (381)
T COG0438 232 KLVIVGDGPERREELEKLA-KKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG 309 (381)
T ss_pred EEEEEcCCCccHHHHHHHH-HHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCC
Confidence 45555555553 3444433 3343323453322222244667899899999984 44545 59999999999776554
No 141
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=67.31 E-value=1.8e+02 Score=31.27 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=31.4
Q ss_pred hHHHHHHH--cCeEEEcCCChHHHHHHHHcCCcEEEEcCCC
Q 014420 328 PHLGHLAW--ADAFVVTADSISLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 328 Py~~~La~--AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~ 366 (425)
|....|+. .+.||.=++ .|.+.||++.|+|++++|.-.
T Consensus 352 PQ~~vL~h~~v~~fvtH~G-~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 352 PQVAILSHRAVGAFLTHCG-WNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred CHHHHhcCCCcCeEEecCC-chHHHHHHHcCCCEEeCCccc
Confidence 67889987 567777777 778889999999999998753
No 142
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=66.00 E-value=6.2 Score=36.64 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=37.3
Q ss_pred hhhccCCCCcEEEEecCcchHHHHHHHHHc------CCCeEEEEec------CC----CCCCCCccEEEecc
Q 014420 136 RETYEKDGPLLVVASGRDTISIASSIKRLA------SDNVFVVQIQ------HP----RVHLNRFDLVITPR 191 (425)
Q Consensus 136 ~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~------~~~~~vV~i~------~P----r~~~~~FDlVivP~ 191 (425)
...+.+.+||+||++|-.+..+...+.++. +.+ +|+|- .+ ++-....|..+|.-
T Consensus 85 ~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~k--iIyIES~aRv~~lSlTGklly~~aD~f~VQW 154 (170)
T PF08660_consen 85 LRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSK--IIYIESFARVKTLSLTGKLLYPFADRFIVQW 154 (170)
T ss_pred HHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCc--EEEEEeeeecCCCchHHHHHHHhCCEEEEcC
Confidence 445566789999999999998888888887 765 45542 23 23334457777643
No 143
>PLN02167 UDP-glycosyltransferase family protein
Probab=65.87 E-value=1.6e+02 Score=31.50 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=37.6
Q ss_pred hHHHHHHHcC--eEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeec
Q 014420 328 PHLGHLAWAD--AFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPF 387 (425)
Q Consensus 328 Py~~~La~AD--~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f 387 (425)
|...+|+... .||.=++ -|.+.||++.|+|++++|+-.-..--. ...+.+.|+...+
T Consensus 349 PQ~~iL~h~~vg~fvtH~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na--~~~~~~~g~g~~~ 407 (475)
T PLN02167 349 PQVEILAHKAIGGFVSHCG-WNSVLESLWFGVPIATWPMYAEQQLNA--FTMVKELGLAVEL 407 (475)
T ss_pred CHHHHhcCcccCeEEeeCC-cccHHHHHHcCCCEEeccccccchhhH--HHHHHHhCeeEEe
Confidence 6778888855 5666666 888899999999999998653321111 1224456665444
No 144
>PLN00164 glucosyltransferase; Provisional
Probab=63.40 E-value=1.7e+02 Score=31.59 Aligned_cols=79 Identities=19% Similarity=0.116 Sum_probs=48.0
Q ss_pred hHHHHHHHcC--eEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHH-HCCCeeecCCCCCCCCCCCCCcchH
Q 014420 328 PHLGHLAWAD--AFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLR-ERGVVRPFTGSEDMSDSWSYPPLND 404 (425)
Q Consensus 328 Py~~~La~AD--~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~-~~G~~r~f~g~~~~~~~~~~~PL~e 404 (425)
|...+|+..+ .||.=++ -|.+.||++.|+|++.+|.-.-...- .+.+. +.|+...+...+ +. ...-+
T Consensus 348 PQ~~iL~h~~vg~fvtH~G-wnS~~Eai~~GVP~l~~P~~~DQ~~N---a~~~~~~~gvG~~~~~~~-----~~-~~~~~ 417 (480)
T PLN00164 348 PQKEILAHAAVGGFVTHCG-WNSVLESLWHGVPMAPWPLYAEQHLN---AFELVADMGVAVAMKVDR-----KR-DNFVE 417 (480)
T ss_pred CHHHHhcCcccCeEEeecc-cchHHHHHHcCCCEEeCCccccchhH---HHHHHHHhCeEEEecccc-----cc-CCcCc
Confidence 6788999988 5666677 88899999999999999865332222 22333 357655442110 00 01224
Q ss_pred HHHHHHHHHHHH
Q 014420 405 TAEAASRVHEAL 416 (425)
Q Consensus 405 t~r~A~~I~~~l 416 (425)
.+.+++.|++.+
T Consensus 418 ~e~l~~av~~vm 429 (480)
T PLN00164 418 AAELERAVRSLM 429 (480)
T ss_pred HHHHHHHHHHHh
Confidence 456666666665
No 145
>PRK10125 putative glycosyl transferase; Provisional
Probab=63.10 E-value=10 Score=39.53 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=31.8
Q ss_pred hHHHHHHHcCeEEEcCCC---hHHHHHHHHcCCcEEEEcCCC
Q 014420 328 PHLGHLAWADAFVVTADS---ISLISEACSTGKPVYVVGAER 366 (425)
Q Consensus 328 Py~~~La~AD~ivVTaDS---vSMlsEA~atGkPV~v~~l~~ 366 (425)
.+..+|+.||.+|.++-. -..+.||.++|+||+.....+
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG 340 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDA 340 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCC
Confidence 468999999999987543 235889999999999987664
No 146
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=62.80 E-value=1.3e+02 Score=27.73 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=48.8
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCC--CCcEEEecCCCCChHH
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGN--NPKVHIWDGEEPNPHL 330 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~--~~~v~iwd~~g~NPy~ 330 (425)
.+...++++||..+ .... ++.. ++..+..+.+. + |++++..+. .+.+.. ...+...+.....-..
T Consensus 26 l~~~~vlVlGgtG~---iG~~----~a~~---l~~~g~~V~l~-~-R~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~ 92 (194)
T cd01078 26 LKGKTAVVLGGTGP---VGQR----AAVL---LAREGARVVLV-G-RDLERAQKA-ADSLRARFGEGVGAVETSDDAARA 92 (194)
T ss_pred CCCCEEEEECCCCH---HHHH----HHHH---HHHCCCEEEEE-c-CCHHHHHHH-HHHHHhhcCCcEEEeeCCCHHHHH
Confidence 34566788887643 1121 2222 23344466555 4 567665443 333321 1234333443233345
Q ss_pred HHHHHcCeEEEcCCChHH--HHHHHHcCCc-EEEEc
Q 014420 331 GHLAWADAFVVTADSISL--ISEACSTGKP-VYVVG 363 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSM--lsEA~atGkP-V~v~~ 363 (425)
..++.+|.||.+. |..| ..+.....+| ..++.
T Consensus 93 ~~~~~~diVi~at-~~g~~~~~~~~~~~~~~~vv~D 127 (194)
T cd01078 93 AAIKGADVVFAAG-AAGVELLEKLAWAPKPLAVAAD 127 (194)
T ss_pred HHHhcCCEEEECC-CCCceechhhhcccCceeEEEE
Confidence 7888999776655 5777 4554444443 44554
No 147
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=62.79 E-value=95 Score=29.96 Aligned_cols=140 Identities=18% Similarity=0.287 Sum_probs=78.9
Q ss_pred CchhhhhhHHHHHHHhhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEec---CC----------CCCCCCccE
Q 014420 120 LSSVLEADVRQIVTMARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQ---HP----------RVHLNRFDL 186 (425)
Q Consensus 120 ~~~~~~~~~~~~~~~a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~---~P----------r~~~~~FDl 186 (425)
+.++|+.|++.+ +.-.|.|+.=-|..+..+.-++++..+++. +++. || +.+.-++|.
T Consensus 28 LlDaLekd~~eL--------~~~~~~i~lEIG~GSGvvstfL~~~i~~~~--~~latDiNp~A~~~Tl~TA~~n~~~~~~ 97 (209)
T KOG3191|consen 28 LLDALEKDAAEL--------KGHNPEICLEIGCGSGVVSTFLASVIGPQA--LYLATDINPEALEATLETARCNRVHIDV 97 (209)
T ss_pred HHHHHHHHHHHH--------hhcCceeEEEecCCcchHHHHHHHhcCCCc--eEEEecCCHHHHHHHHHHHHhcCCccce
Confidence 556677776544 333477765555555556666666666433 3333 55 447778999
Q ss_pred EEeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHH--HHHHHhhhhhhCCCCCCcEEEEEcCC
Q 014420 187 VITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAAL--RSAASAWHEEFAPLPKPLVVVNVGGP 264 (425)
Q Consensus 187 VivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L--~~a~~~~~~~l~~lp~p~vavLIGG~ 264 (425)
|++---+.+. +.+-.|++-.=+--+-+++.+ +.-..+| -||-
T Consensus 98 V~tdl~~~l~---------------------~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~---------------aGG~ 141 (209)
T KOG3191|consen 98 VRTDLLSGLR---------------------NESVDVLVFNPPYVPTSDEEIGDEGIASAW---------------AGGK 141 (209)
T ss_pred eehhHHhhhc---------------------cCCccEEEECCCcCcCCcccchhHHHHHHH---------------hcCc
Confidence 9998888751 111123333111111112222 1112223 5787
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCc-HHHHHHHHH
Q 014420 265 TGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTP-EKVSKIIIK 310 (425)
Q Consensus 265 s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP-~~~~~~L~~ 310 (425)
+|. +...+|..++..++...|-+++.++||.- +++.+.+++
T Consensus 142 ~Gr-----~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~ 183 (209)
T KOG3191|consen 142 DGR-----EVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEK 183 (209)
T ss_pred chH-----HHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhh
Confidence 664 34556778888888777888888888864 456666644
No 148
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=62.31 E-value=16 Score=39.14 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=51.4
Q ss_pred hHHHHHHHcC--eEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCCCCCCCCCCCCCcchHH
Q 014420 328 PHLGHLAWAD--AFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTGSEDMSDSWSYPPLNDT 405 (425)
Q Consensus 328 Py~~~La~AD--~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g~~~~~~~~~~~PL~et 405 (425)
|-.+.|+..+ .+|.=++ -|.+.||++.|+|+..+|+-.-...-++++......|+-...+ . ..+-+.
T Consensus 336 PQ~~iL~h~~vg~fvtH~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~-~---------~~~~~~ 404 (455)
T PLN02152 336 SQIEVLRHRAVGCFVTHCG-WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVREN-S---------EGLVER 404 (455)
T ss_pred CHHHHhCCcccceEEeeCC-cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecC-c---------CCcCcH
Confidence 6778999988 5777777 7888999999999999998654444444443333356443221 0 112345
Q ss_pred HHHHHHHHHHHHh
Q 014420 406 AEAASRVHEALAE 418 (425)
Q Consensus 406 ~r~A~~I~~~l~~ 418 (425)
+.+++.|++.+..
T Consensus 405 e~l~~av~~vm~~ 417 (455)
T PLN02152 405 GEIRRCLEAVMEE 417 (455)
T ss_pred HHHHHHHHHHHhh
Confidence 6677777776643
No 149
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=62.02 E-value=57 Score=38.73 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=25.8
Q ss_pred CCcEEEEecCcchHHHHHHHHHcCCCeEEEEecC
Q 014420 143 GPLLVVASGRDTISIASSIKRLASDNVFVVQIQH 176 (425)
Q Consensus 143 ~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~ 176 (425)
+||+|-|=...+..++..+++..+. + .|+..|
T Consensus 310 ~pDvIHaHyw~sG~aa~~L~~~lgV-P-~V~T~H 341 (1050)
T TIGR02468 310 WPYVIHGHYADAGDSAALLSGALNV-P-MVLTGH 341 (1050)
T ss_pred CCCEEEECcchHHHHHHHHHHhhCC-C-EEEECc
Confidence 6999999988889999999998886 3 455555
No 150
>PLN02555 limonoid glucosyltransferase
Probab=61.95 E-value=1.4e+02 Score=32.37 Aligned_cols=79 Identities=23% Similarity=0.090 Sum_probs=49.6
Q ss_pred hHHHHHH--HcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHC-CCeeecCCCCCCCCCCCCCcchH
Q 014420 328 PHLGHLA--WADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRER-GVVRPFTGSEDMSDSWSYPPLND 404 (425)
Q Consensus 328 Py~~~La--~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~-G~~r~f~g~~~~~~~~~~~PL~e 404 (425)
|...+|+ ...++|.=++ .+.+.||++.|+|++.+|+-.-.... .+.+.+. |+...+...+ + ... .=+
T Consensus 346 PQ~~iL~H~~v~~FvtH~G-~nS~~Eai~~GVP~l~~P~~~DQ~~N---a~~~~~~~gvGv~l~~~~---~--~~~-~v~ 415 (480)
T PLN02555 346 PQEKVLAHPSVACFVTHCG-WNSTMEALSSGVPVVCFPQWGDQVTD---AVYLVDVFKTGVRLCRGE---A--ENK-LIT 415 (480)
T ss_pred CHHHHhCCCccCeEEecCC-cchHHHHHHcCCCEEeCCCccccHHH---HHHHHHHhCceEEccCCc---c--ccC-cCc
Confidence 6777884 4667777777 88899999999999999875332222 3445555 7765553110 0 011 124
Q ss_pred HHHHHHHHHHHH
Q 014420 405 TAEAASRVHEAL 416 (425)
Q Consensus 405 t~r~A~~I~~~l 416 (425)
.+.+++.|++.+
T Consensus 416 ~~~v~~~v~~vm 427 (480)
T PLN02555 416 REEVAECLLEAT 427 (480)
T ss_pred HHHHHHHHHHHh
Confidence 566777777666
No 151
>PHA01630 putative group 1 glycosyl transferase
Probab=60.99 E-value=11 Score=38.23 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=31.3
Q ss_pred ChHHHHHHHcCeEEEcCCCh---HHHHHHHHcCCcEEEEcCC
Q 014420 327 NPHLGHLAWADAFVVTADSI---SLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 327 NPy~~~La~AD~ivVTaDSv---SMlsEA~atGkPV~v~~l~ 365 (425)
.-+..+|+.||.++.+.-+- .-+-||.++|+||+.....
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 35689999999999976643 2478999999999987643
No 152
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=60.27 E-value=2.2e+02 Score=31.83 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=104.5
Q ss_pred cCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCC-CCCCCccEEEeccCCCCCCCccccccchhhhh----cccC
Q 014420 140 EKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR-VHLNRFDLVITPRHDYYPLTPEGQEKIPQFLR----RWIT 214 (425)
Q Consensus 140 ~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr-~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~----~~~~ 214 (425)
..+.-|+.|=.-+.|.-.-.-+-........+=.++.|. .+....|.+|. |.|-++|.+|+.--.-++ +|.+
T Consensus 332 ~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~---D~y~vPp~ae~yysEkl~RLp~cy~p 408 (620)
T COG3914 332 RTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPNMDYFIS---DPYTVPPTAEEYYSEKLWRLPQCYQP 408 (620)
T ss_pred HhcCCeEEEeccCceeccchhhhhcCCCceEEeecccccccCCCcceEEee---CceecCchHHHHHHHHHHhcccccCC
Confidence 456789988887777543322222223334445567775 45578888887 666566666553211111 2222
Q ss_pred CCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc-Ce-E
Q 014420 215 PCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC-GS-I 292 (425)
Q Consensus 215 ~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~-gs-l 292 (425)
. .+.-+ +.+ +++- ..+ .+|..-++..-|+ +.++.+++..+.. .++++.. +| +
T Consensus 409 ~---d~~~~----v~p-~~sR-----------~~l-glp~~avVf~c~~--n~~K~~pev~~~w----mqIL~~vP~Svl 462 (620)
T COG3914 409 V---DGFEP----VTP-PPSR-----------AQL-GLPEDAVVFCCFN--NYFKITPEVFALW----MQILSAVPNSVL 462 (620)
T ss_pred C---CCccc----CCC-Ccch-----------hhc-CCCCCeEEEEecC--CcccCCHHHHHHH----HHHHHhCCCcEE
Confidence 0 11111 111 1111 112 2455554444433 5566888753222 2344432 44 3
Q ss_pred EEEeCCCCcHHHHHHHHHhhCC----CCcEEEecCCCCChHHHHHHHcCeEEEc---CCChHHHHHHHHcCCcEEEEcCC
Q 014420 293 RISFSMRTPEKVSKIIIKELGN----NPKVHIWDGEEPNPHLGHLAWADAFVVT---ADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 293 ~iT~SRRTP~~~~~~L~~~l~~----~~~v~iwd~~g~NPy~~~La~AD~ivVT---aDSvSMlsEA~atGkPV~v~~l~ 365 (425)
++-++- --+++.+.|++..+. ...+.+-+..+..-|.+-|..||.|+=| +. .+..+||...|.||....-+
T Consensus 463 ~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g-~TTa~daLwm~vPVlT~~G~ 540 (620)
T COG3914 463 LLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGG-HTTASDALWMGVPVLTRVGE 540 (620)
T ss_pred EEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCC-ccchHHHHHhcCceeeeccH
Confidence 333333 345555666554432 2344333333333478999999999988 45 78899999999999887654
Q ss_pred C
Q 014420 366 R 366 (425)
Q Consensus 366 ~ 366 (425)
.
T Consensus 541 ~ 541 (620)
T COG3914 541 Q 541 (620)
T ss_pred H
Confidence 3
No 153
>PLN02949 transferase, transferring glycosyl groups
Probab=59.88 E-value=1.1e+02 Score=32.81 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=47.4
Q ss_pred CeEEEEeCCCCcH--HHHHHHHHh---hCCCCcEEEecCCCCChHHHHHHHcCeEEEcC--CChH-HHHHHHHcCCcEEE
Q 014420 290 GSIRISFSMRTPE--KVSKIIIKE---LGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA--DSIS-LISEACSTGKPVYV 361 (425)
Q Consensus 290 gsl~iT~SRRTP~--~~~~~L~~~---l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa--DSvS-MlsEA~atGkPV~v 361 (425)
-.+.|..+-|.++ +..+.|++. +.-..++.+...-..+....+|+.||+++-|. +.-. -+-||.++|+||++
T Consensus 304 ~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa 383 (463)
T PLN02949 304 PKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIA 383 (463)
T ss_pred cEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEE
Confidence 4788888776542 233444332 22223464443323345678999999999875 2233 38899999999998
Q ss_pred EcC
Q 014420 362 VGA 364 (425)
Q Consensus 362 ~~l 364 (425)
...
T Consensus 384 ~~~ 386 (463)
T PLN02949 384 HNS 386 (463)
T ss_pred eCC
Confidence 754
No 154
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=59.69 E-value=68 Score=30.43 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=52.0
Q ss_pred EEEEcCCCCCcc-cCHHHHHHHHHHHHHHHHhcCe-EEEEeCCCCcHHHHHHHHHhhCCC--CcEEEecCCCCChHHHHH
Q 014420 258 VVNVGGPTGCCR-YGSDLAKQLTAHLLNVLVSCGS-IRISFSMRTPEKVSKIIIKELGNN--PKVHIWDGEEPNPHLGHL 333 (425)
Q Consensus 258 avLIGG~s~~~~-~~~~~a~~L~~~l~~l~~~~gs-l~iT~SRRTP~~~~~~L~~~l~~~--~~v~iwd~~g~NPy~~~L 333 (425)
++++||..-.+. .+.+. |.+.+........+ ++|.|-...+++..+...+.+... ..+...+-.........|
T Consensus 2 l~~igg~~~~~~~~~~~~---l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l 78 (212)
T cd03146 2 LLLTSGGGLGYLAHALPA---IDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDAL 78 (212)
T ss_pred EEEEeCCcccccccchHH---HHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHH
Confidence 467777654411 22222 32333333222334 444333335556555555555432 123333211122347889
Q ss_pred HHcCeEEEcCCChHH-------------HHHHHHcCCcEEEEc
Q 014420 334 AWADAFVVTADSISL-------------ISEACSTGKPVYVVG 363 (425)
Q Consensus 334 a~AD~ivVTaDSvSM-------------lsEA~atGkPV~v~~ 363 (425)
..||.|++++++... |-|++..|+|+.=+.
T Consensus 79 ~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 79 LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 999999999987544 445555677765443
No 155
>PLN03007 UDP-glucosyltransferase family protein
Probab=59.25 E-value=26 Score=37.60 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=42.1
Q ss_pred hHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCee
Q 014420 328 PHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVR 385 (425)
Q Consensus 328 Py~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r 385 (425)
|...+|+.++. +|.=++ .|.+.||++.|+|++++|+-.-..-.+++.....+.|+-.
T Consensus 354 PQ~~iL~h~~v~~fvtH~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~ 412 (482)
T PLN03007 354 PQVLILDHQATGGFVTHCG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSV 412 (482)
T ss_pred CHHHHhccCccceeeecCc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEe
Confidence 66889999874 555566 8889999999999999998654444555555556677653
No 156
>PLN02670 transferase, transferring glycosyl groups
Probab=59.17 E-value=66 Score=34.71 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=48.9
Q ss_pred hHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCCCCCCCCCCCCCcchHH
Q 014420 328 PHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTGSEDMSDSWSYPPLNDT 405 (425)
Q Consensus 328 Py~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g~~~~~~~~~~~PL~et 405 (425)
|-.++|+..+. +|.=++ -|.+.||++.|+|+..+|+-.-...-+ +.+++.|+...+...+ +.. . =+.
T Consensus 348 PQ~~IL~H~~v~~FvtHcG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na---~~v~~~g~Gv~l~~~~---~~~---~-~~~ 416 (472)
T PLN02670 348 PQVKILSHESVGGFLTHCG-WNSVVEGLGFGRVLILFPVLNEQGLNT---RLLHGKKLGLEVPRDE---RDG---S-FTS 416 (472)
T ss_pred CHHHHhcCcccceeeecCC-cchHHHHHHcCCCEEeCcchhccHHHH---HHHHHcCeeEEeeccc---cCC---c-CcH
Confidence 55677877665 666666 899999999999999999764443333 3345567766553211 000 1 145
Q ss_pred HHHHHHHHHHH
Q 014420 406 AEAASRVHEAL 416 (425)
Q Consensus 406 ~r~A~~I~~~l 416 (425)
+.+++.|++.+
T Consensus 417 e~i~~av~~vm 427 (472)
T PLN02670 417 DSVAESVRLAM 427 (472)
T ss_pred HHHHHHHHHHh
Confidence 55666666666
No 157
>PLN00142 sucrose synthase
Probab=58.45 E-value=2.4e+02 Score=32.80 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=27.7
Q ss_pred CCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecC
Q 014420 142 DGPLLVVASGRDTISIASSIKRLASDNVFVVQIQH 176 (425)
Q Consensus 142 ~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~ 176 (425)
..||||+|--..+..++..+++..+. | .|++.|
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgV-P-~v~T~H 439 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGV-T-QCTIAH 439 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCC-C-EEEEcc
Confidence 46999999999999999999999986 3 566666
No 158
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=58.43 E-value=43 Score=30.79 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc---CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC---GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLG 331 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~---gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~ 331 (425)
|+|+|+.|+.|- ... ++.....++.. ..+.|..-.|||+++.+.+++.-.....++|.-.-..|-..+
T Consensus 1 p~V~Ii~gs~SD-----~~~----~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg 71 (150)
T PF00731_consen 1 PKVAIIMGSTSD-----LPI----AEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPG 71 (150)
T ss_dssp -EEEEEESSGGG-----HHH----HHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHH
T ss_pred CeEEEEeCCHHH-----HHH----HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchh
Confidence 678999998664 222 23333344443 378899999999999999977432233565553222333333
Q ss_pred HHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCC
Q 014420 332 HLAWADAFVVTADSISLISEACSTGKPVYVVGAERCT 368 (425)
Q Consensus 332 ~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~ 368 (425)
.+ |..|-+||+-+|.+...
T Consensus 72 vv------------------a~~t~~PVIgvP~~~~~ 90 (150)
T PF00731_consen 72 VV------------------ASLTTLPVIGVPVSSGY 90 (150)
T ss_dssp HH------------------HHHSSS-EEEEEE-STT
T ss_pred hh------------------eeccCCCEEEeecCccc
Confidence 33 34568899988876553
No 159
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=57.94 E-value=13 Score=36.01 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHcCeEEEcCC-----ChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCC
Q 014420 333 LAWADAFVVTAD-----SISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTG 389 (425)
Q Consensus 333 La~AD~ivVTaD-----SvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g 389 (425)
-+.||.+||.+. +.+++.+|.-.||||+++|-.-. ..-...-+.|.+.|+ .++..
T Consensus 153 a~ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~-~~~~~G~~~Li~~GA-~~i~~ 212 (220)
T TIGR00732 153 SGLSRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLN-SPESDGCHKLIEQGA-ALITS 212 (220)
T ss_pred HHhcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCC-CccchHHHHHHHCCC-EEECC
Confidence 346677777654 56888899999999999975433 233345677888895 45543
No 160
>PLN02210 UDP-glucosyl transferase
Probab=57.90 E-value=1.4e+02 Score=31.84 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=51.8
Q ss_pred ChHHHHHHHcC--eEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHH-CCCeeecCCCCCCCCCCCCCcch
Q 014420 327 NPHLGHLAWAD--AFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRE-RGVVRPFTGSEDMSDSWSYPPLN 403 (425)
Q Consensus 327 NPy~~~La~AD--~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~-~G~~r~f~g~~~~~~~~~~~PL~ 403 (425)
=|....|+.++ .+|.=++ .|.+.||++.|+|++.+|.-.-...- .+.+.+ .|+...+...+ +... =
T Consensus 332 ~PQ~~iL~h~~vg~FitH~G-~nS~~Eai~~GVP~v~~P~~~DQ~~n---a~~~~~~~g~G~~l~~~~---~~~~----~ 400 (456)
T PLN02210 332 SPQEKILSHMAISCFVTHCG-WNSTIETVVAGVPVVAYPSWTDQPID---ARLLVDVFGIGVRMRNDA---VDGE----L 400 (456)
T ss_pred CCHHHHhcCcCcCeEEeeCC-cccHHHHHHcCCCEEecccccccHHH---HHHHHHHhCeEEEEeccc---cCCc----C
Confidence 47889999998 7777777 88899999999999999875332222 345555 56665553211 0011 1
Q ss_pred HHHHHHHHHHHHH
Q 014420 404 DTAEAASRVHEAL 416 (425)
Q Consensus 404 et~r~A~~I~~~l 416 (425)
+.+.+++.|++.+
T Consensus 401 ~~~~l~~av~~~m 413 (456)
T PLN02210 401 KVEEVERCIEAVT 413 (456)
T ss_pred CHHHHHHHHHHHh
Confidence 3456666666666
No 161
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=56.66 E-value=22 Score=36.08 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 315 NPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 315 ~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
..++..++. ...+..+|..||.+|. |=.|++.|++.++|||+.+...
T Consensus 251 ~~~i~~~~~--~~~~~~ll~~aDiLIT--DySSi~fD~~~l~KPiify~~D 297 (369)
T PF04464_consen 251 NSNIIFVSD--NEDIYDLLAAADILIT--DYSSIIFDFLLLNKPIIFYQPD 297 (369)
T ss_dssp TTTEEE-TT---S-HHHHHHT-SEEEE--SS-THHHHHGGGT--EEEE-TT
T ss_pred CCcEEECCC--CCCHHHHHHhcCEEEE--echhHHHHHHHhCCCEEEEecc
Confidence 356766554 4478999999999774 7789999999999999988654
No 162
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=53.28 E-value=2.2e+02 Score=29.76 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=80.7
Q ss_pred CCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCC-CCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCC
Q 014420 220 DGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPT-GCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (425)
Q Consensus 220 ~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s-~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SR 298 (425)
.+||+.+ |+++.-........-.+|.+.+..- +.-++++-=|+. ....+.++....++..+.+. ++-. .|-.-
T Consensus 244 ~~~v~~I-G~l~~~~~~~~~~~~~~wl~~~~~~-~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~--~~~~-FiW~~- 317 (496)
T KOG1192|consen 244 LPKVIPI-GPLHVKDSKQKSPLPLEWLDILDES-RHSVVYISFGSMVNSADLPEEQKKELAKALESL--QGVT-FLWKY- 317 (496)
T ss_pred CCCceEE-CcEEecCccccccccHHHHHHHhhc-cCCeEEEECCcccccccCCHHHHHHHHHHHHhC--CCce-EEEEe-
Confidence 5788887 8877653321111234565555432 234555555555 44578887766665554443 1221 11111
Q ss_pred CCcHHHHHHHHHhhCC--CCcEEE--ecCCCC----ChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChh
Q 014420 299 RTPEKVSKIIIKELGN--NPKVHI--WDGEEP----NPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWK 370 (425)
Q Consensus 299 RTP~~~~~~L~~~l~~--~~~v~i--wd~~g~----NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k 370 (425)
|.+.... +.+.+.+ ..+++. |-.+.+ +|-. ..+|.=|+ -+-+.|++..|+|+..+|+-+-.
T Consensus 318 ~~~~~~~--~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v------~~FvTHgG-~nSt~E~~~~GvP~v~~Plf~DQ-- 386 (496)
T KOG1192|consen 318 RPDDSIY--FPEGLPNRGRGNVVLSKWAPQNDLLLDHPAV------GGFVTHGG-WNSTLESIYSGVPMVCVPLFGDQ-- 386 (496)
T ss_pred cCCcchh--hhhcCCCCCcCceEEecCCCcHHHhcCCCcC------cEEEECCc-ccHHHHHHhcCCceecCCccccc--
Confidence 2211111 3333332 235777 743222 2211 26666677 67779999999999888875332
Q ss_pred HHHHHHHHHHCCCeeecC
Q 014420 371 FTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 371 ~~rf~~~L~~~G~~r~f~ 388 (425)
.+-.+.+.+.|.+....
T Consensus 387 -~~Na~~i~~~g~~~v~~ 403 (496)
T KOG1192|consen 387 -PLNARLLVRHGGGGVLD 403 (496)
T ss_pred -hhHHHHHHhCCCEEEEe
Confidence 22356778888886653
No 163
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=52.62 E-value=27 Score=30.41 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhC-CCCcEEEec
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELG-NNPKVHIWD 322 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~-~~~~v~iwd 322 (425)
++++++||+++ ++.+.++. ++.+++...+.+||+...+..+.+.+.+. ...++.++.
T Consensus 1 k~~lItGa~~g---iG~~~a~~-------l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~ 58 (167)
T PF00106_consen 1 KTVLITGASSG---IGRALARA-------LARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIE 58 (167)
T ss_dssp EEEEEETTTSH---HHHHHHHH-------HHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEECCCCH---HHHHHHHH-------HHhcCceEEEEeeeccccccccccccccccccccccccc
Confidence 36899999887 44433322 24456778889999854554455544443 224565554
No 164
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=52.55 E-value=79 Score=29.69 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=35.3
Q ss_pred cCeEEE-EeCCCCcHHHHHHHHHhhCCC--CcEEEe--cCCCCChHHHHHHHcCeEEEcCCChHHHHHH
Q 014420 289 CGSIRI-SFSMRTPEKVSKIIIKELGNN--PKVHIW--DGEEPNPHLGHLAWADAFVVTADSISLISEA 352 (425)
Q Consensus 289 ~gsl~i-T~SRRTP~~~~~~L~~~l~~~--~~v~iw--d~~g~NPy~~~La~AD~ivVTaDSvSMlsEA 352 (425)
..++.+ .+.--.+++..+...+.+... ....+. +.....-....|..||.|++++++...+.+.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~ 97 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSV 97 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHH
Confidence 345544 344434455445444444321 112222 2212234578999999999999988766555
No 165
>PLN02534 UDP-glycosyltransferase
Probab=52.25 E-value=32 Score=37.22 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=50.3
Q ss_pred hHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHH-HCCCeeecCCCCCCCCCCCC----C
Q 014420 328 PHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLR-ERGVVRPFTGSEDMSDSWSY----P 400 (425)
Q Consensus 328 Py~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~-~~G~~r~f~g~~~~~~~~~~----~ 400 (425)
|....|+..+. +|.=++ -|.+.||++.|+|++.+|.-....... +.+. +-|+...+.... ...|.. .
T Consensus 353 pq~~iL~h~~v~~fvtH~G-~ns~~ea~~~GvP~v~~P~~~dq~~na---~~~~e~~~vGv~~~~~~--~~~~~~~~~~~ 426 (491)
T PLN02534 353 PQVLILSHPAIGGFLTHCG-WNSTIEGICSGVPMITWPLFAEQFLNE---KLIVEVLRIGVRVGVEV--PVRWGDEERVG 426 (491)
T ss_pred CHHHHhcCCccceEEecCc-cHHHHHHHHcCCCEEeccccccHHHHH---HHHHHhhcceEEecccc--ccccccccccc
Confidence 56788888776 555556 888899999999999998753333333 3333 223332221100 011211 1
Q ss_pred cchHHHHHHHHHHHHHH
Q 014420 401 PLNDTAEAASRVHEALA 417 (425)
Q Consensus 401 PL~et~r~A~~I~~~l~ 417 (425)
++-+.+++++.|++.+.
T Consensus 427 ~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 427 VLVKKDEVEKAVKTLMD 443 (491)
T ss_pred CccCHHHHHHHHHHHhc
Confidence 24467788888888884
No 166
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=52.02 E-value=2.4e+02 Score=28.95 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHHHcCCcEEEEcCCCC-------ChhHHHHHHHHHHCCCeeecC
Q 014420 349 ISEACSTGKPVYVVGAERC-------TWKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 349 lsEA~atGkPV~v~~l~~~-------~~k~~rf~~~L~~~G~~r~f~ 388 (425)
+..+...|+||+++.+-.. ........+...+.|.+-...
T Consensus 257 L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~pYVs 303 (315)
T TIGR01370 257 LYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGLIPYVA 303 (315)
T ss_pred HHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCCeeeec
Confidence 4455666889888876432 234566678888888874443
No 167
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=51.88 E-value=1.1e+02 Score=30.89 Aligned_cols=117 Identities=21% Similarity=0.131 Sum_probs=60.6
Q ss_pred CCCcEEEecCCCCcCChHHHH-HHHHhhhhhhCCCCCCcEEEEEcCCCCCc---ccCHHHHHHHHHHHHHH-HHhc-CeE
Q 014420 219 PDGHVVLTTGALHQIDSAALR-SAASAWHEEFAPLPKPLVVVNVGGPTGCC---RYGSDLAKQLTAHLLNV-LVSC-GSI 292 (425)
Q Consensus 219 ~~~NVl~T~Galh~v~~~~L~-~a~~~~~~~l~~lp~p~vavLIGG~s~~~---~~~~~~a~~L~~~l~~l-~~~~-gsl 292 (425)
.+.+|+.. |+ . +...+. ..+.+..+.|+..+.....++-||+..-+ ...++....-..++... +..+ -=+
T Consensus 61 ~ggrI~~~-Ga--G-tSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l~~~DvvI 136 (299)
T PRK05441 61 QGGRLIYI-GA--G-TSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINLTAKDVVV 136 (299)
T ss_pred CCCEEEEE-cC--c-HHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCCCCCCEEE
Confidence 34556555 76 2 233343 33445667777656666777888875432 22233222222333322 1111 246
Q ss_pred EEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcC
Q 014420 293 RISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA 343 (425)
Q Consensus 293 ~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa 343 (425)
.||.|-|||.- ...++..-.....+........+|... .||.++.+.
T Consensus 137 ~IS~SG~T~~v-i~al~~Ak~~Ga~tI~IT~~~~s~La~---~aD~~I~~~ 183 (299)
T PRK05441 137 GIAASGRTPYV-IGALEYARERGALTIGISCNPGSPLSK---EADIAIEVV 183 (299)
T ss_pred EEeCCCCCHHH-HHHHHHHHHCCCeEEEEECCCCChhhH---hCCEEEEcC
Confidence 67999999984 455544333333444444444555443 589888764
No 168
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=51.71 E-value=82 Score=32.30 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=57.2
Q ss_pred HHHhcCeE-EEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC---ChHHHHHHHHcCCcEE
Q 014420 285 VLVSCGSI-RISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD---SISLISEACSTGKPVY 360 (425)
Q Consensus 285 l~~~~gsl-~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD---SvSMlsEA~atGkPV~ 360 (425)
.+.+.... .|+.--|.++++.+...+...........|-.+.+-...+++.+|.||.+.. +..++.-|+.+|++.+
T Consensus 16 ~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 16 LLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYV 95 (386)
T ss_dssp HHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEE
T ss_pred HHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCee
Confidence 34443333 7777888888887776542222222334455444447899999999998774 3344444555677643
Q ss_pred EEcCCCCChhHHHHHHHHHHCCCeeec
Q 014420 361 VVGAERCTWKFTDFHKSLRERGVVRPF 387 (425)
Q Consensus 361 v~~l~~~~~k~~rf~~~L~~~G~~r~f 387 (425)
- ..........+++...+.|..-..
T Consensus 96 -D-~~~~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 96 -D-TSYVTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp -E-SS-HHHHHHHCHHHHHHTTSEEE-
T ss_pred -c-cchhHHHHHHHHHHHHhhCCEEEe
Confidence 3 222234566668888888887655
No 169
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=51.26 E-value=3.2e+02 Score=29.67 Aligned_cols=57 Identities=19% Similarity=0.094 Sum_probs=41.0
Q ss_pred hHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHH-HCCCeeecC
Q 014420 328 PHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLR-ERGVVRPFT 388 (425)
Q Consensus 328 Py~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~-~~G~~r~f~ 388 (425)
|..++|+..+. +|.=++ -|.+.||++.|+|++.+|+-.-.... .+.+. +.|+...++
T Consensus 347 PQ~~iL~h~~vg~FitH~G-~nS~~Eal~~GVP~l~~P~~~DQ~~n---a~~~~~~~g~gv~~~ 406 (481)
T PLN02992 347 PQAEILAHQAVGGFLTHCG-WSSTLESVVGGVPMIAWPLFAEQNMN---AALLSDELGIAVRSD 406 (481)
T ss_pred CHHHHhCCcccCeeEecCc-hhHHHHHHHcCCCEEecCccchhHHH---HHHHHHHhCeeEEec
Confidence 77889999885 666666 88999999999999999976443333 34443 567665553
No 170
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=51.08 E-value=1.8e+02 Score=27.67 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=45.1
Q ss_pred EEEEcCCCCCcccCHHHHHHHHHHHHHHHH-hcCeEEEE-eCCCCcHHHHHHHHHhhCC--CCcEEEecCC----CCCh-
Q 014420 258 VVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-SCGSIRIS-FSMRTPEKVSKIIIKELGN--NPKVHIWDGE----EPNP- 328 (425)
Q Consensus 258 avLIGG~s~~~~~~~~~a~~L~~~l~~l~~-~~gsl~iT-~SRRTP~~~~~~L~~~l~~--~~~v~iwd~~----g~NP- 328 (425)
+++|||... .++... +.+.+.++.. ...++.+- +.--.+++..+.+.+.+.. ...+.+..-. ..+|
T Consensus 2 l~~iGGg~~--~~~~~~---i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~ 76 (217)
T cd03145 2 LVLIGGAED--KYDNRA---ILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPE 76 (217)
T ss_pred EEEEeCCCC--CcCHHH---HHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHH
Confidence 478888765 333332 2233333332 23455553 3222244444444433321 1123222221 1334
Q ss_pred HHHHHHHcCeEEEcCCChHHHHH
Q 014420 329 HLGHLAWADAFVVTADSISLISE 351 (425)
Q Consensus 329 y~~~La~AD~ivVTaDSvSMlsE 351 (425)
....+..||.|++++++..-+.+
T Consensus 77 ~~~~l~~ad~I~~~GG~~~~~~~ 99 (217)
T cd03145 77 VVARLRDADGIFFTGGDQLRITS 99 (217)
T ss_pred HHHHHHhCCEEEEeCCcHHHHHH
Confidence 47899999999999998865554
No 171
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=50.77 E-value=1.4e+02 Score=27.98 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=38.2
Q ss_pred HHHHcCeEEEcCCChHHHHH----------------HHHcCCcEEEEcCCCC----------ChhHH--------HHHHH
Q 014420 332 HLAWADAFVVTADSISLISE----------------ACSTGKPVYVVGAERC----------TWKFT--------DFHKS 377 (425)
Q Consensus 332 ~La~AD~ivVTaDSvSMlsE----------------A~atGkPV~v~~l~~~----------~~k~~--------rf~~~ 377 (425)
.++++|.++|-.=|+|+|+- +...++|++++|.-.. ...+. +-.+.
T Consensus 75 ~l~~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~ 154 (174)
T TIGR02699 75 QMGKYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEK 154 (174)
T ss_pred cccccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHH
Confidence 56789999999888887653 3345899999996321 11233 45677
Q ss_pred HHHCCCeeecCC
Q 014420 378 LRERGVVRPFTG 389 (425)
Q Consensus 378 L~~~G~~r~f~g 389 (425)
|.+..-++.++.
T Consensus 155 L~~~~gv~v~~~ 166 (174)
T TIGR02699 155 LAQMEGIEILTK 166 (174)
T ss_pred HhhCCCeEEECC
Confidence 777644555543
No 172
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=49.98 E-value=1.6e+02 Score=29.79 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCCcEEEecCCCCcCChHHH-HHHHHhhhhhhCCCCCCcEEEEEcCCCCCcc---cCHHHHHHHHHHHHHHHHhcC--eE
Q 014420 219 PDGHVVLTTGALHQIDSAAL-RSAASAWHEEFAPLPKPLVVVNVGGPTGCCR---YGSDLAKQLTAHLLNVLVSCG--SI 292 (425)
Q Consensus 219 ~~~NVl~T~Galh~v~~~~L-~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~---~~~~~a~~L~~~l~~l~~~~g--sl 292 (425)
.+.+|+.. |+ .- ...+ ...+.++.+.|+..+....+++.||...-+. -+++.......++....-..+ =+
T Consensus 57 ~ggrl~~~-Ga--G~-Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~DvvI 132 (296)
T PRK12570 57 KGGRLIYM-GA--GT-SGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGLTADDVVV 132 (296)
T ss_pred cCCeEEEE-CC--ch-hHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcCCCCCCEEE
Confidence 34566655 77 22 2222 1234556677877777777788898765443 111221112233332211223 46
Q ss_pred EEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEE
Q 014420 293 RISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVV 341 (425)
Q Consensus 293 ~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivV 341 (425)
.||.|-+||.- ...++..-.....++...+...+|.. ..||..+.
T Consensus 133 ~IS~SG~T~~v-i~al~~Ak~~Ga~~IaIT~~~~s~La---~~aD~~I~ 177 (296)
T PRK12570 133 GIAASGRTPYV-IGALEYAKQIGATTIALSCNPDSPIA---KIADIAIS 177 (296)
T ss_pred EEeCCCCCHHH-HHHHHHHHHCCCeEEEEECCCCChhH---HhCCEEEe
Confidence 67999999984 45554433222344444444455643 46898886
No 173
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=48.65 E-value=74 Score=34.51 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred EEEcCCCCCcccCHHHHHHHHHHHHHHHHhc----Ce---EEEEeCCCCcHHHHHHHHHhhC-----------CC--CcE
Q 014420 259 VNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC----GS---IRISFSMRTPEKVSKIIIKELG-----------NN--PKV 318 (425)
Q Consensus 259 vLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~----gs---l~iT~SRRTP~~~~~~L~~~l~-----------~~--~~v 318 (425)
+++|-+ ...|+.-...+| .....+++.. |. +.|.+.-|+.-...+.+++++. .. ..+
T Consensus 257 lilgVD--RLDytKGi~~rl-~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv 333 (474)
T PRK10117 257 NIFSVE--RLDYSKGLPERF-LAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPL 333 (474)
T ss_pred EEEEec--ccccccCHHHHH-HHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeE
Confidence 556654 345555554455 4555666532 33 3354444554333333333332 11 112
Q ss_pred -EEecCCCCChHHHHHHHcCeEEEcC--CChHHHH-HHHHcCC
Q 014420 319 -HIWDGEEPNPHLGHLAWADAFVVTA--DSISLIS-EACSTGK 357 (425)
Q Consensus 319 -~iwd~~g~NPy~~~La~AD~ivVTa--DSvSMls-EA~atGk 357 (425)
++...-+.+-+.++|..||..+||+ |-+|.++ |-+++-.
T Consensus 334 ~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~ 376 (474)
T PRK10117 334 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQD 376 (474)
T ss_pred EEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeec
Confidence 2222223334689999999999997 7788887 8888855
No 174
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=48.00 E-value=87 Score=29.67 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=27.3
Q ss_pred HHHHHHcCeEEEcCCChH---HHHHHHHcCCcEEEEcC
Q 014420 330 LGHLAWADAFVVTADSIS---LISEACSTGKPVYVVGA 364 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvS---MlsEA~atGkPV~v~~l 364 (425)
.+.+..+|.||+..|+-. +|++.|..+++|.+..-
T Consensus 65 ~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~ 102 (202)
T PRK06718 65 PSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITD 102 (202)
T ss_pred hhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCC
Confidence 466889999887766544 78888888999988764
No 175
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=46.83 E-value=1.7e+02 Score=26.97 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcE--EEecCCCCChHHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKV--HIWDGEEPNPHLGHL 333 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v--~iwd~~g~NPy~~~L 333 (425)
++++++||+++ ++...++.| ++.+.++ +.++||+++...+.+.+.-....++ +..|-........++
T Consensus 1 k~~lItG~sg~---iG~~la~~l-------~~~G~~v-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 69 (242)
T TIGR01829 1 RIALVTGGMGG---IGTAICQRL-------AKDGYRV-AANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAV 69 (242)
T ss_pred CEEEEECCCCh---HHHHHHHHH-------HHCCCEE-EEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHH
Confidence 36889999776 444433333 3344454 4456666666555443321111233 333443333333333
Q ss_pred H-------HcCeEEEcCC
Q 014420 334 A-------WADAFVVTAD 344 (425)
Q Consensus 334 a-------~AD~ivVTaD 344 (425)
. ..|.+|..+.
T Consensus 70 ~~~~~~~~~id~vi~~ag 87 (242)
T TIGR01829 70 AKVEAELGPIDVLVNNAG 87 (242)
T ss_pred HHHHHHcCCCcEEEECCC
Confidence 3 3588888775
No 176
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=46.56 E-value=2.4e+02 Score=25.94 Aligned_cols=113 Identities=11% Similarity=0.023 Sum_probs=65.8
Q ss_pred eEEEEeCCCCcHHHHHHHHHhhCCCC-cEEEecCCCCChHHHHHHH-cC-eEEEcCCChHHHHHHHHcCCcEEEEcCCCC
Q 014420 291 SIRISFSMRTPEKVSKIIIKELGNNP-KVHIWDGEEPNPHLGHLAW-AD-AFVVTADSISLISEACSTGKPVYVVGAERC 367 (425)
Q Consensus 291 sl~iT~SRRTP~~~~~~L~~~l~~~~-~v~iwd~~g~NPy~~~La~-AD-~ivVTaDSvSMlsEA~atGkPV~v~~l~~~ 367 (425)
-++|.|..-..++..+.+..+....+ ++..+.. +-.....+.. .+ .-+|-=||++++-.......+ .+..
T Consensus 29 ~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~--~~~l~~~i~~~~~~~~~VlID~Lt~~~~n~l~~~~-----~~~~ 101 (170)
T PRK05800 29 VLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEE--PLDLAELLRADAAPGRCVLVDCLTTWVTNLLFEEG-----EEAI 101 (170)
T ss_pred cEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecc--cccHHHHHHhhcCCCCEEEehhHHHHHHHHhcccc-----hHHH
Confidence 47888888888888788766555443 3333422 2234455544 11 224556888877655443111 0111
Q ss_pred ChhHHHHHHHHHHCCCeeecCCCCCCCCCCCCCcchHHHHHHHHHH
Q 014420 368 TWKFTDFHKSLRERGVVRPFTGSEDMSDSWSYPPLNDTAEAASRVH 413 (425)
Q Consensus 368 ~~k~~rf~~~L~~~G~~r~f~g~~~~~~~~~~~PL~et~r~A~~I~ 413 (425)
...+.++.+.|.+.|....+...+ ..|.-.|.|+..|.=....
T Consensus 102 ~~~l~~li~~L~~~~~tvVlVs~E---vg~g~vp~~~~~r~~~d~l 144 (170)
T PRK05800 102 AAEIDALLAALQQLPAKIILVTNE---VGMGIVPEYRLGRHFRDIA 144 (170)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcC---CcccccCCCHHHHHHHHHH
Confidence 235677889999988877775543 4577777777665443333
No 177
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=45.75 E-value=1.6e+02 Score=29.02 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=59.5
Q ss_pred CCCcEEEecCCCCcCChHHHH-HHHHhhhhhhCCCCCCcEEEEEcCCCCCc---ccCHHHHHHHHHHHHHHHHhcC--eE
Q 014420 219 PDGHVVLTTGALHQIDSAALR-SAASAWHEEFAPLPKPLVVVNVGGPTGCC---RYGSDLAKQLTAHLLNVLVSCG--SI 292 (425)
Q Consensus 219 ~~~NVl~T~Galh~v~~~~L~-~a~~~~~~~l~~lp~p~vavLIGG~s~~~---~~~~~~a~~L~~~l~~l~~~~g--sl 292 (425)
.+.+++.. |+ . +...+. ..+.+..++|+..+.....++.||...-. .-.+++...-...+....-..+ =+
T Consensus 48 ~ggrl~~~-Ga--G-tSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~DvvI 123 (257)
T cd05007 48 AGGRLIYV-GA--G-TSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTERDVVI 123 (257)
T ss_pred cCCEEEEE-cC--c-HHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCCCCCEEE
Confidence 45566665 76 2 233443 33456667888777778888889975211 1111111111122222111222 46
Q ss_pred EEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcC
Q 014420 293 RISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTA 343 (425)
Q Consensus 293 ~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTa 343 (425)
.||.|-|||.-. ..++..-.....+....+...+|.. ..||.++.+.
T Consensus 124 ~IS~SG~T~~vi-~al~~Ak~~Ga~~I~It~~~~s~L~---~~aD~~I~~~ 170 (257)
T cd05007 124 GIAASGRTPYVL-GALRYARARGALTIGIACNPGSPLL---QLADIAIALI 170 (257)
T ss_pred EEeCCCCCHHHH-HHHHHHHHCCCeEEEEECCCCChhH---HhCCEEEEcC
Confidence 679999999854 4443322222334333443444543 3588888764
No 178
>PLN02173 UDP-glucosyl transferase family protein
Probab=44.32 E-value=67 Score=34.41 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=34.5
Q ss_pred hHHHHHHHcC--eEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHH
Q 014420 328 PHLGHLAWAD--AFVVTADSISLISEACSTGKPVYVVGAERCTWKFT 372 (425)
Q Consensus 328 Py~~~La~AD--~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~ 372 (425)
|-...|+..+ .+|.=++ -|.+-||++.|+|++.+|+-.....-.
T Consensus 326 PQ~~iL~H~~v~~FvtHcG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na 371 (449)
T PLN02173 326 PQLQVLSNKAIGCFMTHCG-WNSTMEGLSLGVPMVAMPQWTDQPMNA 371 (449)
T ss_pred CHHHHhCCCccceEEecCc-cchHHHHHHcCCCEEecCchhcchHHH
Confidence 5678888877 7777788 778899999999999999764443333
No 179
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=44.16 E-value=84 Score=28.79 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=40.8
Q ss_pred CcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcC--CCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCC
Q 014420 221 GHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGG--PTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (425)
Q Consensus 221 ~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG--~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SR 298 (425)
..+++..|+ ||.+......+ .+...|+|+++|.+|- -++.. |.+.. ....-+..++ --.+.|-.-.
T Consensus 50 ADiLlVTG~---vT~~~~e~lkk----~Yea~PePKiViA~GaCa~~GGI-f~~~~--~v~gpvd~vi--PVDv~IPGCP 117 (148)
T COG3260 50 ADILLVTGA---VTRQMREPLKK----AYEAMPEPKIVIAVGACALSGGI-FKDSY--SVWGPVDKVI--PVDVEIPGCP 117 (148)
T ss_pred ccEEEEecc---ccHHHHHHHHH----HHHhCCCCcEEEEEcccccCCce-ecccc--ccccccccee--EeeeEcCCCC
Confidence 445555588 66655443333 3345799999999985 23322 22210 0001111111 0134455556
Q ss_pred CCcHHHHHHHHHhhC
Q 014420 299 RTPEKVSKIIIKELG 313 (425)
Q Consensus 299 RTP~~~~~~L~~~l~ 313 (425)
=||++.++.|...+.
T Consensus 118 P~P~~il~g~~~al~ 132 (148)
T COG3260 118 PRPEAILAGLVAALG 132 (148)
T ss_pred CCHHHHHHHHHHHHH
Confidence 677777777755543
No 180
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=43.79 E-value=2.6e+02 Score=27.43 Aligned_cols=89 Identities=21% Similarity=0.215 Sum_probs=45.8
Q ss_pred EEEcCCCCCcccCHHHHHHHHHHHHHHHH-hcCeEEE--EeCCCCcHHHHHHHHHhhCCC--CcEEEec---CC-CCCh-
Q 014420 259 VNVGGPTGCCRYGSDLAKQLTAHLLNVLV-SCGSIRI--SFSMRTPEKVSKIIIKELGNN--PKVHIWD---GE-EPNP- 328 (425)
Q Consensus 259 vLIGG~s~~~~~~~~~a~~L~~~l~~l~~-~~gsl~i--T~SRRTP~~~~~~L~~~l~~~--~~v~iwd---~~-g~NP- 328 (425)
++|||.... .++.. +.+.+.++.. ...++.+ |.| ..|++..+...+.+... ..+.+.+ .+ ..+|
T Consensus 2 ~~iGG~~~~--~~~~~---i~~~~~~lag~~~~rI~~iptAS-~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~ 75 (250)
T TIGR02069 2 VIIGGAEDK--VGDRE---ILREFVSRAGGEDAIIVIITSAS-EEPREVGERYITIFSRLGVKEVKILDVREREDASDEN 75 (250)
T ss_pred eEEeCcccc--CChHH---HHHHHHHHhCCCCceEEEEeCCC-CChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHH
Confidence 789996643 33332 3344333332 1124444 335 35655544444433211 1222222 22 1233
Q ss_pred HHHHHHHcCeEEEcCCChHHHHHHH
Q 014420 329 HLGHLAWADAFVVTADSISLISEAC 353 (425)
Q Consensus 329 y~~~La~AD~ivVTaDSvSMlsEA~ 353 (425)
....|..||.|+++++..+-+.+..
T Consensus 76 ~~~~l~~ad~I~~~GGnq~~l~~~l 100 (250)
T TIGR02069 76 AIALLSNATGIFFTGGDQLRITSLL 100 (250)
T ss_pred HHHHHhhCCEEEEeCCCHHHHHHHH
Confidence 4689999999999999976665433
No 181
>PRK12937 short chain dehydrogenase; Provisional
Probab=43.37 E-value=2.3e+02 Score=26.17 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEe--cCCCCChHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIW--DGEEPNPHLGH 332 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iw--d~~g~NPy~~~ 332 (425)
..+++++||+++ ++...++.| ++.+.++.++ +||+++...+...+.......+.+. |-...+.+..+
T Consensus 5 ~~~vlItG~~~~---iG~~la~~l-------~~~g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 5 NKVAIVTGASRG---IGAAIARRL-------AADGFAVAVN-YAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCEEEEeCCCch---HHHHHHHHH-------HHCCCEEEEe-cCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 357888998766 444433222 3345565554 5666554333322211111234333 44334445555
Q ss_pred HH-------HcCeEEEcCC
Q 014420 333 LA-------WADAFVVTAD 344 (425)
Q Consensus 333 La-------~AD~ivVTaD 344 (425)
+. ..|.+|..++
T Consensus 74 ~~~~~~~~~~id~vi~~ag 92 (245)
T PRK12937 74 FDAAETAFGRIDVLVNNAG 92 (245)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 54 3688887765
No 182
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=43.20 E-value=42 Score=32.59 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=29.5
Q ss_pred hHHHHHHHcCeEEE-cCCC--hHHHHHHHHcCC-cEEEE
Q 014420 328 PHLGHLAWADAFVV-TADS--ISLISEACSTGK-PVYVV 362 (425)
Q Consensus 328 Py~~~La~AD~ivV-TaDS--vSMlsEA~atGk-PV~v~ 362 (425)
.|...|+.|...++ .+|+ ..-+.||+.+|| ||++-
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~ 267 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIIS 267 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEec
Confidence 48999999999888 7774 456999999999 99874
No 183
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=43.08 E-value=3.1e+02 Score=26.31 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=67.1
Q ss_pred EEEcCC-CCCcccCHHHHHHHHHHHHHHHH--hcCeEEEEeCCCCcHHHHHHHHHhhCCCCcE-EEe-cCCCCChHHHHH
Q 014420 259 VNVGGP-TGCCRYGSDLAKQLTAHLLNVLV--SCGSIRISFSMRTPEKVSKIIIKELGNNPKV-HIW-DGEEPNPHLGHL 333 (425)
Q Consensus 259 vLIGG~-s~~~~~~~~~a~~L~~~l~~l~~--~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v-~iw-d~~g~NPy~~~L 333 (425)
.+.|-- ++.|-+|-+..........+++. .++.+++..+|+--........+..... .+ .-| .|.=.|++..-.
T Consensus 28 yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~-~v~~RWlgGtLTN~~~~~~ 106 (196)
T TIGR01012 28 FIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIEPEDILVVSARIYGQKPVLKFAKVTGAR-AIAGRFTPGTFTNPMQKAF 106 (196)
T ss_pred ceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhhCCeEEEEecCHHHHHHHHHHHHHhCCc-eECCeeCCCCCCCcccccc
Confidence 366665 57788887544333333333332 2678888888887666666665555332 22 125 556688876555
Q ss_pred HHcCeEEEcC--CChHHHHHHHHcCCcEEEEcC
Q 014420 334 AWADAFVVTA--DSISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 334 a~AD~ivVTa--DSvSMlsEA~atGkPV~v~~l 364 (425)
..=|++||+- ....-|.||...|.||+-+.-
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCD 139 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEee
Confidence 6778888874 236779999999999987654
No 184
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=43.02 E-value=2.9e+02 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=23.5
Q ss_pred EEcCCChHHHH---HHHHc---CCcEEEEcCCCC-----ChhHHHHHHHHHHC-CC
Q 014420 340 VVTADSISLIS---EACST---GKPVYVVGAERC-----TWKFTDFHKSLRER-GV 383 (425)
Q Consensus 340 vVTaDSvSMls---EA~at---GkPV~v~~l~~~-----~~k~~rf~~~L~~~-G~ 383 (425)
.|..|...+-. |.+.. |.-=+++-.... ..|.+-|++.|.+. |.
T Consensus 99 ~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~ 154 (270)
T cd06308 99 YIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKI 154 (270)
T ss_pred EeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCC
Confidence 46667665443 33443 555444442111 23666678888877 65
No 185
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=41.35 E-value=1.3e+02 Score=26.68 Aligned_cols=68 Identities=28% Similarity=0.315 Sum_probs=39.6
Q ss_pred HHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCCh--HHHHHHHcCeEEEcCCC-------hHHHHHHH-H
Q 014420 285 VLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNP--HLGHLAWADAFVVTADS-------ISLISEAC-S 354 (425)
Q Consensus 285 l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NP--y~~~La~AD~ivVTaDS-------vSMlsEA~-a 354 (425)
++..+.++.+.. |++++..+ .+++.+..++-.++ +...|+-+|.++.+... +-.+.+|| .
T Consensus 18 L~~~~~~V~~~~--R~~~~~~~--------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~ 87 (183)
T PF13460_consen 18 LLRRGHEVTALV--RSPSKAED--------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKK 87 (183)
T ss_dssp HHHTTSEEEEEE--SSGGGHHH--------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEe--cCchhccc--------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccc
Confidence 344555555544 33554444 23554544433444 68899999999999863 44455555 4
Q ss_pred cCCcEEEE
Q 014420 355 TGKPVYVV 362 (425)
Q Consensus 355 tGkPV~v~ 362 (425)
+|.+=+++
T Consensus 88 ~~~~~~v~ 95 (183)
T PF13460_consen 88 AGVKRVVY 95 (183)
T ss_dssp TTSSEEEE
T ss_pred ccccccee
Confidence 57665554
No 186
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=41.28 E-value=2.3e+02 Score=26.25 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=40.2
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC-CcEEE--ecCCCCChHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN-PKVHI--WDGEEPNPHLG 331 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v~i--wd~~g~NPy~~ 331 (425)
.++++++||+++ ++...++.| +..+.++.+ ..+|.++...+.+ +.+... ..+.+ .|-....-...
T Consensus 6 ~~~~lItG~s~~---iG~~la~~l-------~~~g~~v~~-~~~~~~~~~~~~~-~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (247)
T PRK12935 6 GKVAIVTGGAKG---IGKAITVAL-------AQEGAKVVI-NYNSSKEAAENLV-NELGKEGHDVYAVQADVSKVEDANR 73 (247)
T ss_pred CCEEEEECCCCH---HHHHHHHHH-------HHcCCEEEE-EcCCcHHHHHHHH-HHHHhcCCeEEEEECCCCCHHHHHH
Confidence 568899999875 444443333 334445544 3455555544333 223221 23433 34433333444
Q ss_pred HHHH-------cCeEEEcCCC
Q 014420 332 HLAW-------ADAFVVTADS 345 (425)
Q Consensus 332 ~La~-------AD~ivVTaDS 345 (425)
+++. .|.+|..+..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 74 LVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 5544 4888877763
No 187
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.94 E-value=1.3e+02 Score=28.36 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKII 308 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L 308 (425)
+.++++++||+++ ++...++.| ++.+.++.++..++..++..+.+
T Consensus 14 ~~k~vlItGas~g---IG~~ia~~l-------~~~G~~v~~~~~~~~~~~~~~~~ 58 (258)
T PRK06935 14 DGKVAIVTGGNTG---LGQGYAVAL-------AKAGADIIITTHGTNWDETRRLI 58 (258)
T ss_pred CCCEEEEeCCCch---HHHHHHHHH-------HHCCCEEEEEeCCcHHHHHHHHH
Confidence 3467788888765 444433222 23445665554443223333333
No 188
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=39.89 E-value=82 Score=28.83 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=32.4
Q ss_pred hHHHHHHHcCeEEEcCCChHHH---HHHHHcCCcEEEEcCCCCChh
Q 014420 328 PHLGHLAWADAFVVTADSISLI---SEACSTGKPVYVVGAERCTWK 370 (425)
Q Consensus 328 Py~~~La~AD~ivVTaDSvSMl---sEA~atGkPV~v~~l~~~~~k 370 (425)
-=.-+...||++|+-+...-.+ .||.+.+|||++++.++.-..
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g~~~~ 129 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTGGWTD 129 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCCcchH
Confidence 3457888999999988766665 556778999999987654333
No 189
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=39.32 E-value=3.1e+02 Score=25.18 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=58.4
Q ss_pred cccCHHHHHHHHHHHHHHHHhcCe---EEEEeCCCCcHHHHHHHHHhhCCCCc-EEEe-cCCCCChHHHHHHHcCeEEEc
Q 014420 268 CRYGSDLAKQLTAHLLNVLVSCGS---IRISFSMRTPEKVSKIIIKELGNNPK-VHIW-DGEEPNPHLGHLAWADAFVVT 342 (425)
Q Consensus 268 ~~~~~~~a~~L~~~l~~l~~~~gs---l~iT~SRRTP~~~~~~L~~~l~~~~~-v~iw-d~~g~NPy~~~La~AD~ivVT 342 (425)
-.+.++....|...|. ..+.| +.-.-|++|=-+...+|.+......- +.+. +..|-..+.-+==++|.++|.
T Consensus 30 ~~l~~~s~~~l~~eL~---~~GYSylNIfs~~~~~~~V~eR~~l~~~~~grsFTvI~~elp~g~~DiR~LqLASerilvs 106 (146)
T PF04763_consen 30 ESLPPESVSLLIEELE---ESGYSYLNIFSCSSESMCVKERQILNDDSQGRSFTVILTELPEGSADIRCLQLASERILVS 106 (146)
T ss_pred cCCChHHHHHHHHHHh---hcCCceEEEEEEcCCCcchHHHHHhcCCccCceEEEEEEcCCCCccchhhhhhhhccceec
Confidence 3456655434433322 23433 22234455444555555443332221 2333 334444455444456777775
Q ss_pred CCChHHHHHHHHcCCcEEEEcCCCCCh--hHHHHHHHHHH
Q 014420 343 ADSISLISEACSTGKPVYVVGAERCTW--KFTDFHKSLRE 380 (425)
Q Consensus 343 aDSvSMlsEA~atGkPV~v~~l~~~~~--k~~rf~~~L~~ 380 (425)
-. --+..||++||-|..+.-+...| +|..|.+...+
T Consensus 107 ~~--~~aaDa~ASgCkvl~~e~~~~~w~~~~~~~~~~V~~ 144 (146)
T PF04763_consen 107 RE--CDAADAYASGCKVLQFEDEHNPWASEHAQFAREVRR 144 (146)
T ss_pred cc--ccHHHHHhcCceEEEecCcCCHHHHHHHHHHHHHhh
Confidence 33 33789999999999998776665 67777666554
No 190
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=39.28 E-value=4.9e+02 Score=27.48 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=88.4
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecC--CCCChHH
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDG--EEPNPHL 330 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~--~g~NPy~ 330 (425)
....++|.|+|+-..|.- ++....+..++..+.+.-|+=..+-+...--+.+..++-+..|+. ++.-.+-
T Consensus 3 ~~k~ill~v~gsiaayk~--------~~l~r~L~~~ga~v~vvmt~~a~~fv~p~~~~~~s~~~v~t~~~~~~~~~~~HI 74 (392)
T COG0452 3 EGKRILLGVTGSIAAYKS--------VELVRLLRRSGAEVRVVMTESARKFITPLTFQALSGNPVYTLLDEELTGSVEHI 74 (392)
T ss_pred CCceEEEEecCchhhhhH--------HHHHHHHhhCCCeeEEEcchhhhhhcCcccHHHhhCCCccccccccccccccHh
Confidence 445788999998777654 233333445666676666654333322222222333332324544 3344466
Q ss_pred HHHHHcCeEEEcCCChHHHHH-------------HHHcCCcEEEEcCCCC----ChhHHHHHHHHHHCCCeeecC--CCC
Q 014420 331 GHLAWADAFVVTADSISLISE-------------ACSTGKPVYVVGAERC----TWKFTDFHKSLRERGVVRPFT--GSE 391 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsE-------------A~atGkPV~v~~l~~~----~~k~~rf~~~L~~~G~~r~f~--g~~ 391 (425)
.+-.+||.+++.+-+++.++= +.++-+|+++.|.-.. ..--++-.+.|.+.|+...=. |..
T Consensus 75 ~l~~~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~~~p~~~aPamn~~M~~~~~tq~n~~~l~~~g~~~I~p~~~~~ 154 (392)
T COG0452 75 ELARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAAKAPLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGEL 154 (392)
T ss_pred hhhhccCEEEecCCChhHHHHHHHhhhccHHHHHHHHhcCcEEEecCcCHHHhhCHHHHHHHHHHHHCCcEEECcccccc
Confidence 777799999999888877765 2334449988875332 123445578888878764322 221
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHhc
Q 014420 392 DMSDSWSYPPLNDTAEAASRVHEALAER 419 (425)
Q Consensus 392 ~~~~~~~~~PL~et~r~A~~I~~~l~~~ 419 (425)
..-..-.+.|.+.+...+.+.+...
T Consensus 155 ---a~~g~g~~~e~~~Iv~~~~~~~~~~ 179 (392)
T COG0452 155 ---ADVGDGRLAEPEEIVEAALALLKTP 179 (392)
T ss_pred ---cccccccCCCHHHHHHHHHhhcccc
Confidence 1111235677777777776665543
No 191
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=39.12 E-value=2e+02 Score=28.37 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=64.0
Q ss_pred cCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCCCCCCccEEEeccCCCCCCCccccccchhhhhcccCCCCCC
Q 014420 140 EKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPP 219 (425)
Q Consensus 140 ~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~ 219 (425)
....+-.|||.|-.+...+..+....+.+. .. -+|++|..... +
T Consensus 38 ~~~~~i~vvg~GKAa~~MA~a~~~~lg~~i--~~-----------G~vv~~~g~~~-----------------------~ 81 (238)
T PF13660_consen 38 SKYGRIYVVGFGKAAAPMAEAAEEILGDRI--VG-----------GLVVVPYGHES-----------------------P 81 (238)
T ss_dssp E--SSEEEEEESTTHHHHHHHHHHHCGGCE--EE-----------EEEEEETT---------------------------
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHHhcccc--cC-----------ceEEeCCcccC-----------------------C
Confidence 346788999999999999999988887632 10 15566643321 2
Q ss_pred CCcEEEecCCCCcCChHHHHHHHHhhhhhhCCC-CCCc-EEEEEcCCCCCcccC-----HHHHHHHHHHHHHHHHhcCeE
Q 014420 220 DGHVVLTTGALHQIDSAALRSAASAWHEEFAPL-PKPL-VVVNVGGPTGCCRYG-----SDLAKQLTAHLLNVLVSCGSI 292 (425)
Q Consensus 220 ~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~l-p~p~-vavLIGG~s~~~~~~-----~~~a~~L~~~l~~l~~~~gsl 292 (425)
-+|+-+..|. ||+-.+.=-+|.++..+.+..+ +.-+ ++++-||-|.=+..- -++-.++ .+.++..+..
T Consensus 82 ~~~i~v~~~~-HP~Pd~~s~~aa~~il~~~~~~~~~dlvl~LiSGGgSALl~~P~~gisLed~~~~---~~~Ll~sGa~- 156 (238)
T PF13660_consen 82 LPRIEVLEGG-HPLPDENSVRAARRILELARELTEDDLVLVLISGGGSALLELPADGISLEDKQEL---TKLLLRSGAD- 156 (238)
T ss_dssp -TTSEEEEE--SSS--HHHHHHHHHHHHHHCC--TTSEEEEEE-TTHHHHS--B-TT--HHHHHHH---HHHHHHCT---
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCChHHhhcCCCCCCCHHHHHHH---HHHHHHCCCC-
Confidence 2455555566 9998765444555555555533 4444 445556655433332 2332222 2233434432
Q ss_pred EEEeCCCCcHHHHHHHHHhhCC
Q 014420 293 RISFSMRTPEKVSKIIIKELGN 314 (425)
Q Consensus 293 ~iT~SRRTP~~~~~~L~~~l~~ 314 (425)
=.-++.+++.++.
T Consensus 157 ---------I~EiN~VRkhLS~ 169 (238)
T PF13660_consen 157 ---------IHEINTVRKHLSR 169 (238)
T ss_dssp ---------HHHHHHHHHTTBS
T ss_pred ---------HHHHHHHHHHHhc
Confidence 2456788888763
No 192
>PRK03094 hypothetical protein; Provisional
Probab=39.11 E-value=18 Score=29.91 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHH-HHcCCcEEEEcCCCC
Q 014420 307 IIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEA-CSTGKPVYVVGAERC 367 (425)
Q Consensus 307 ~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA-~atGkPV~v~~l~~~ 367 (425)
-+++.|... ++.+-+-..++. +.-+|++|+|+.+.+|..-. .+++.||+ ...+.
T Consensus 12 ~i~~~L~~~-GYeVv~l~~~~~----~~~~Da~VitG~d~n~mgi~d~~t~~pVI--~A~G~ 66 (80)
T PRK03094 12 DVQQALKQK-GYEVVQLRSEQD----AQGCDCCVVTGQDSNVMGIADTSTKGSVI--TASGL 66 (80)
T ss_pred HHHHHHHHC-CCEEEecCcccc----cCCcCEEEEeCCCcceecccccccCCcEE--EcCCC
Confidence 344555442 455544322222 45689999999999999865 55666664 44443
No 193
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=38.03 E-value=3.7e+02 Score=25.76 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=52.7
Q ss_pred HHHHHHcCeEEEcCCChHHHHH---HHHcCC-cEEEEcCCC-------CChhHHHHHH-HHHHCCCeeecCCCCCCCCCC
Q 014420 330 LGHLAWADAFVVTADSISLISE---ACSTGK-PVYVVGAER-------CTWKFTDFHK-SLRERGVVRPFTGSEDMSDSW 397 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvSMlsE---A~atGk-PV~v~~l~~-------~~~k~~rf~~-~L~~~G~~r~f~g~~~~~~~~ 397 (425)
.-+...||++|+=++.+-.+.| +.+-++ |++.+..+. .......|.+ .+...|++..-.. +
T Consensus 105 ~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i~~~~~-------~ 177 (205)
T COG1611 105 RAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEGLISEADR-------E 177 (205)
T ss_pred HHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhhcCChhhh-------h
Confidence 5788899999999999988765 556677 776433322 2234555666 7888888755421 1
Q ss_pred CCCcchHHHHHHHHHHHHHH
Q 014420 398 SYPPLNDTAEAASRVHEALA 417 (425)
Q Consensus 398 ~~~PL~et~r~A~~I~~~l~ 417 (425)
-..=.++.+.+.+.+.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~ 197 (205)
T COG1611 178 LLIVVDDAEEAIDAILKYLP 197 (205)
T ss_pred heeeecCHHHHHHHHHHhcc
Confidence 22334777777777766554
No 194
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.02 E-value=3e+02 Score=26.70 Aligned_cols=37 Identities=5% Similarity=-0.038 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHh-cCeEEEEeCCCCcHHHHHHHHHhhC
Q 014420 277 QLTAHLLNVLVS-CGSIRISFSMRTPEKVSKIIIKELG 313 (425)
Q Consensus 277 ~L~~~l~~l~~~-~gsl~iT~SRRTP~~~~~~L~~~l~ 313 (425)
.+...+++.+.+ +..+.+..+...++...+.++..+.
T Consensus 17 ~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~ 54 (305)
T cd06324 17 SVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQ 54 (305)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 445666665654 4577777777777766666655544
No 195
>COG3233 Predicted deacetylase [General function prediction only]
Probab=37.60 E-value=1.4e+02 Score=29.45 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=48.7
Q ss_pred hHHHHHHHHcCCcE-EEEcCCC------CChhHHHHHHHHHHCCCeeecCCCCCCC--CCCCC--CcchHHHHHHHHHHH
Q 014420 346 ISLISEACSTGKPV-YVVGAER------CTWKFTDFHKSLRERGVVRPFTGSEDMS--DSWSY--PPLNDTAEAASRVHE 414 (425)
Q Consensus 346 vSMlsEA~atGkPV-~v~~l~~------~~~k~~rf~~~L~~~G~~r~f~g~~~~~--~~~~~--~PL~et~r~A~~I~~ 414 (425)
++.|+|-+.-+++| .|+|--. ...||.+.+..++++|.--.+.|-...- ..-.+ -+..||.+=-..=.+
T Consensus 24 ~~~ide~~~~~~t~lLViPn~~~~~~l~~d~rf~~~l~~r~e~Gdel~lHGy~h~d~~~~gEF~~l~~~eA~~RL~~a~~ 103 (233)
T COG3233 24 DAAIDEYGAQNSTVLLVIPNHANDYPLSKDPRFVDLLTEREEEGDELVLHGYDHIDTKRRGEFACLRAHEARLRLMAAIE 103 (233)
T ss_pred HHHHHHhCCCCceEEEEeeccCCCCCcccChHHHHHHHHHHhcCCEEEEechhhccccCccccccchHHHHHHHHHHHHH
Confidence 45688999999999 5565422 2358999999999999987776532111 01112 223344333333346
Q ss_pred HHHhcCCccC
Q 014420 415 ALAERGWKLR 424 (425)
Q Consensus 415 ~l~~~~~~~~ 424 (425)
.|++.||.++
T Consensus 104 ~l~~~G~~~~ 113 (233)
T COG3233 104 ELEALGFPLR 113 (233)
T ss_pred HHHHcCCcce
Confidence 6788999864
No 196
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.35 E-value=2.7e+02 Score=25.93 Aligned_cols=77 Identities=23% Similarity=0.237 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCC-CCcEEE--ecCCCCChHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGN-NPKVHI--WDGEEPNPHLGH 332 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~-~~~v~i--wd~~g~NPy~~~ 332 (425)
+++++.||+++ ++...++.| ++.+..+.+ ..|+.++...+.+. .+.. ..++.+ -|-..++-+..+
T Consensus 3 k~vlItG~sg~---iG~~la~~L-------~~~g~~vi~-~~r~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (256)
T PRK12745 3 PVALVTGGRRG---IGLGIARAL-------AAAGFDLAI-NDRPDDEELAATQQ-ELRALGVEVIFFPADVADLSAHEAM 70 (256)
T ss_pred cEEEEeCCCch---HHHHHHHHH-------HHCCCEEEE-EecCchhHHHHHHH-HHHhcCCceEEEEecCCCHHHHHHH
Confidence 47788888765 555443333 233445544 45555544433332 2221 123333 354433334333
Q ss_pred HH-------HcCeEEEcCC
Q 014420 333 LA-------WADAFVVTAD 344 (425)
Q Consensus 333 La-------~AD~ivVTaD 344 (425)
+. ..|.+|..+.
T Consensus 71 ~~~~~~~~~~id~vi~~ag 89 (256)
T PRK12745 71 LDAAQAAWGRIDCLVNNAG 89 (256)
T ss_pred HHHHHHhcCCCCEEEECCc
Confidence 33 4588888764
No 197
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.09 E-value=3.8e+02 Score=26.05 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHh--c-CeEEEEeCCCCcHHHHHHHHHhhC
Q 014420 275 AKQLTAHLLNVLVS--C-GSIRISFSMRTPEKVSKIIIKELG 313 (425)
Q Consensus 275 a~~L~~~l~~l~~~--~-gsl~iT~SRRTP~~~~~~L~~~l~ 313 (425)
...+...+.+.+.+ . -.+.+..+-..++...+.|...+.
T Consensus 14 ~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~ 55 (303)
T cd01539 14 ISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALA 55 (303)
T ss_pred HHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 33455666666665 3 367777777788777676765443
No 198
>PRK03972 ribosomal biogenesis protein; Validated
Probab=37.02 E-value=80 Score=30.65 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=33.2
Q ss_pred EEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHH------cCeEEEcCC
Q 014420 292 IRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAW------ADAFVVTAD 344 (425)
Q Consensus 292 l~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~------AD~ivVTaD 344 (425)
++|||||+-.....+.+++...--|+...+. .|..++.++... -|.+||.+|
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~-RGk~~lkel~~~A~~~g~TdLIVV~E~ 59 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLT-RGKKTIQDLLMEAYDRGYERLLIINVW 59 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEEEe-cCCccHHHHHHHHHHCCCCeEEEEecC
Confidence 6899999988887766655333334443332 235566665554 478999988
No 199
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=36.58 E-value=5.4e+02 Score=27.22 Aligned_cols=167 Identities=18% Similarity=0.133 Sum_probs=95.5
Q ss_pred HHhhhhhhCCC---CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc-CeEEEEeCCCCcHHHHHHHHH-hhC---
Q 014420 242 ASAWHEEFAPL---PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC-GSIRISFSMRTPEKVSKIIIK-ELG--- 313 (425)
Q Consensus 242 ~~~~~~~l~~l---p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~-gsl~iT~SRRTP~~~~~~L~~-~l~--- 313 (425)
+.+|..+++.. +.-+.+.|++ |.......+++.++ ... .-.++.+.-|....+.+.+.. .+.
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~-------Ye~~~l~~ll~~~~---~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~ 237 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC-------YENAALASLLDAWA---ASPKPVHLLVPEGRALNSLAAWLGDALLQAGD 237 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe-------CCchHHHHHHHHHh---cCCCCeEEEecCCccHHHHHHHhccccccCcc
Confidence 55566677642 4445555544 66654434444433 222 345556666777777666641 111
Q ss_pred ----CCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCC----hhHHHHHHHHHH-----
Q 014420 314 ----NNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCT----WKFTDFHKSLRE----- 380 (425)
Q Consensus 314 ----~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~----~k~~rf~~~L~~----- 380 (425)
..-.+.+-++-.-+-|..+|..||.-+|+|. -|.|- |.-+|||-+=--+|... .|...|.+.+..
T Consensus 238 ~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE-DSfVR-AqwAgkPFvWhIYpQ~d~aHl~KL~AFL~~y~~~~~~~ 315 (374)
T PF10093_consen 238 SWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGE-DSFVR-AQWAGKPFVWHIYPQEDDAHLDKLDAFLDRYCAGLPPE 315 (374)
T ss_pred ccccCCeEEEECCCCCHHHHHHHHHhCccceEecc-hHHHH-HHHhCCCceEecCcCchhhHHHHHHHHHHHHhhcCCHH
Confidence 1123455677777789999999999999998 78776 99999998765555543 366666665541
Q ss_pred -CCCee----ecCCCCCCCCCCCC--CcchHHHHHHHHHHHHHHhcC
Q 014420 381 -RGVVR----PFTGSEDMSDSWSY--PPLNDTAEAASRVHEALAERG 420 (425)
Q Consensus 381 -~G~~r----~f~g~~~~~~~~~~--~PL~et~r~A~~I~~~l~~~~ 420 (425)
...++ .+++..+....|.. .-+.+-.+.|+.-.+.|.++|
T Consensus 316 ~~~a~~~~~~~wN~~~~~~~~w~~~~~~~~~~~~~a~~w~~~l~~~~ 362 (374)
T PF10093_consen 316 AAAALRAFWRAWNGGQDAPDAWQDLLEHLPEWQQHARAWRQQLLAQG 362 (374)
T ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 11122 22333222222433 224455556666666665544
No 200
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=36.46 E-value=5.3e+02 Score=27.14 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCC-CcHHHHHHHHHhhCC---CCcEEEe-cCCCCCh
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMR-TPEKVSKIIIKELGN---NPKVHIW-DGEEPNP 328 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRR-TP~~~~~~L~~~l~~---~~~v~iw-d~~g~NP 328 (425)
+....+||| +|+..+=+--+ .| +.|.+....+..+.|--|-= +.++..+.+.+.... ..++.+- ++=+.+.
T Consensus 183 ~~~ltILvG-NSgd~sNnHie--aL-~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 183 KGKLTILVG-NSGDPSNNHIE--AL-EALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDE 258 (360)
T ss_pred CCceEEEEc-CCCCCCccHHH--HH-HHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHH
Confidence 345677785 56554333221 12 33333222234677777765 345666655554331 1245443 3445667
Q ss_pred HHHHHHHcCeEEE---cCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCCC
Q 014420 329 HLGHLAWADAFVV---TADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTGS 390 (425)
Q Consensus 329 y~~~La~AD~ivV---TaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g~ 390 (425)
|..+|+.+|..+- +---+.-|+=+...|+||++-.- .-|.+.|.++|+.--|.+.
T Consensus 259 Yl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~-------np~~~~l~~~~ipVlf~~d 316 (360)
T PF07429_consen 259 YLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRD-------NPFWQDLKEQGIPVLFYGD 316 (360)
T ss_pred HHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecC-------ChHHHHHHhCCCeEEeccc
Confidence 9999999999875 34446678889999999998642 2578999999998888653
No 201
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=35.64 E-value=2.5e+02 Score=30.71 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=34.1
Q ss_pred cEEEecCCCCChHHHHHHHcCeEEEcCCC--hHHHHHHHHcCCcEE
Q 014420 317 KVHIWDGEEPNPHLGHLAWADAFVVTADS--ISLISEACSTGKPVY 360 (425)
Q Consensus 317 ~v~iwd~~g~NPy~~~La~AD~ivVTaDS--vSMlsEA~atGkPV~ 360 (425)
.+.+-....++-....|..|..+|-|+.+ -.|+-||.+.|.|++
T Consensus 410 ~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred EEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee
Confidence 34333444455788999999999999854 348999999999998
No 202
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=35.40 E-value=80 Score=33.26 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=20.1
Q ss_pred hhhhccCCCCcEEEEecCcch-HHHHHHHHH
Q 014420 135 ARETYEKDGPLLVVASGRDTI-SIASSIKRL 164 (425)
Q Consensus 135 a~~~l~~~~PdLVI~~Gr~t~-~~~~~lrr~ 164 (425)
+.+.++...||.|||-|+.+. =.+-.+.-+
T Consensus 78 ~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~ 108 (377)
T COG1454 78 GAEVAREFGPDTIIALGGGSVIDAAKAIALL 108 (377)
T ss_pred HHHHHHhcCCCEEEEeCCccHHHHHHHHHHH
Confidence 344567789999999988864 344444333
No 203
>PLN03004 UDP-glycosyltransferase
Probab=35.30 E-value=98 Score=33.20 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=49.3
Q ss_pred hHHHHHHHcCe--EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHH-CCCeeecCCCCCCCCCCCCCcchH
Q 014420 328 PHLGHLAWADA--FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRE-RGVVRPFTGSEDMSDSWSYPPLND 404 (425)
Q Consensus 328 Py~~~La~AD~--ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~-~G~~r~f~g~~~~~~~~~~~PL~e 404 (425)
|-..+|+.++. +|.=++ -|.+.||++.|+|++.+|.-.-...- .+.+++ .|+...++..+ . .+-+
T Consensus 343 PQ~~iL~H~~v~~FvTH~G-~nS~lEal~~GVP~v~~P~~~DQ~~n---a~~~~~~~g~g~~l~~~~----~----~~~~ 410 (451)
T PLN03004 343 PQVPVLNHKAVGGFVTHCG-WNSILEAVCAGVPMVAWPLYAEQRFN---RVMIVDEIKIAISMNESE----T----GFVS 410 (451)
T ss_pred CHHHHhCCCccceEeccCc-chHHHHHHHcCCCEEeccccccchhh---HHHHHHHhCceEEecCCc----C----CccC
Confidence 56789999997 666677 78888999999999999875332222 344543 47765553210 0 0124
Q ss_pred HHHHHHHHHHHHH
Q 014420 405 TAEAASRVHEALA 417 (425)
Q Consensus 405 t~r~A~~I~~~l~ 417 (425)
.+.+++.|++.+.
T Consensus 411 ~e~l~~av~~vm~ 423 (451)
T PLN03004 411 STEVEKRVQEIIG 423 (451)
T ss_pred HHHHHHHHHHHhc
Confidence 4566666666653
No 204
>PRK10736 hypothetical protein; Provisional
Probab=35.02 E-value=38 Score=35.60 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=34.5
Q ss_pred HHHcCeEEEcC---CChHHHH--HHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCCCC
Q 014420 333 LAWADAFVVTA---DSISLIS--EACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTGSE 391 (425)
Q Consensus 333 La~AD~ivVTa---DSvSMls--EA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g~~ 391 (425)
-+.|+.+||.+ .|-||+. .|.-.|++|+.+|-+-. ....+.-..|.+.| +..+++.+
T Consensus 216 agLS~~viVvEA~~kSGsliTA~~Al~~gR~VfavPG~i~-~~~s~G~n~LI~~G-A~lv~~~~ 277 (374)
T PRK10736 216 SGLSKGVLVVEAALRSGSLVTARCALEQGRDVFALPGPIG-NPGSEGPHWLIKQG-AYLVTSPE 277 (374)
T ss_pred HHhCCeEEEEEeCCCCchHHHHHHHHHhCCeEEEEcCCCC-CccchhHHHHHHCC-CEEeCCHH
Confidence 34566666654 4445554 99999999999974332 22233445666777 44544433
No 205
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.58 E-value=2.4e+02 Score=26.18 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEe--cCCCCChHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIW--DGEEPNPHLGH 332 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iw--d~~g~NPy~~~ 332 (425)
.++++++||+++ ++.+.++.| ++++.++.++.+ |+++... .+...+.. ++.++ |-....-...+
T Consensus 5 ~k~ilItGas~g---IG~~la~~l-------~~~G~~vv~~~~-~~~~~~~-~~~~~~~~--~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 5 EQTVLVTGGSRG---LGAAIARAF-------AREGARVVVNYH-QSEDAAE-ALADELGD--RAIALQADVTDREQVQAM 70 (253)
T ss_pred CCEEEEeCCCCc---HHHHHHHHH-------HHCCCeEEEEcC-CCHHHHH-HHHHHhCC--ceEEEEcCCCCHHHHHHH
Confidence 357889999876 444433222 334556666554 4444433 33343432 34333 44333333444
Q ss_pred HHH--------cCeEEEcC
Q 014420 333 LAW--------ADAFVVTA 343 (425)
Q Consensus 333 La~--------AD~ivVTa 343 (425)
+.. -|.+|..+
T Consensus 71 ~~~~~~~~g~~id~li~~a 89 (253)
T PRK08642 71 FATATEHFGKPITTVVNNA 89 (253)
T ss_pred HHHHHHHhCCCCeEEEECC
Confidence 433 57777765
No 206
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=34.07 E-value=77 Score=30.37 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=28.3
Q ss_pred HHHHcCeEEEcC-----CChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeec
Q 014420 332 HLAWADAFVVTA-----DSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPF 387 (425)
Q Consensus 332 ~La~AD~ivVTa-----DSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f 387 (425)
+-+.||.+||++ .|...+-+|.-.||||+++|.+-.. .....-..|.+.| ++++
T Consensus 152 iaaLs~~~vvvea~~~sGt~~ta~~A~~~gr~v~~vp~~~~~-~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 152 IAALSDAVVVVEAGEKSGTLHTARFALEQGRPVFAVPGPIDD-PNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp HHHH-S-EEE----TT-THHHHHHHHHHHT--EEE----TT--GGGHHHHHHHHTT--EE-
T ss_pred HHHhCCeEEEEecCCCChHHHHHHHHHHcCCeEEEEeCCCCC-cccHHHHHHHHcC-CEee
Confidence 345667777754 4566678999999999998655433 3334467788888 5554
No 207
>PRK06172 short chain dehydrogenase; Provisional
Probab=33.91 E-value=2.1e+02 Score=26.78 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhC-CCCcEEEe--cCCCCChHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELG-NNPKVHIW--DGEEPNPHLG 331 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~-~~~~v~iw--d~~g~NPy~~ 331 (425)
.++++++||+++ ++...+++| ++.+..+.++ + |++++..+...+ +. ....+.+. |-........
T Consensus 7 ~k~ilItGas~~---iG~~ia~~l-------~~~G~~v~~~-~-r~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 7 GKVALVTGGAAG---IGRATALAF-------AREGAKVVVA-D-RDAAGGEETVAL-IREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCEEEEeCCCch---HHHHHHHHH-------HHcCCEEEEE-e-CCHHHHHHHHHH-HHhcCCceEEEEcCCCCHHHHHH
Confidence 457788888765 555443333 2344455544 3 344443332222 21 11234333 4333333445
Q ss_pred HHHHc-------CeEEEcCC
Q 014420 332 HLAWA-------DAFVVTAD 344 (425)
Q Consensus 332 ~La~A-------D~ivVTaD 344 (425)
++..+ |.+|..+.
T Consensus 74 ~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 74 LVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 55544 78877664
No 208
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=33.76 E-value=4.4e+02 Score=26.34 Aligned_cols=86 Identities=7% Similarity=-0.063 Sum_probs=47.8
Q ss_pred CCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHh-cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCC---CCh
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVS-CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEE---PNP 328 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~-~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g---~NP 328 (425)
.+..+++++.+. +......+...+.+.+.+ +.++.+..+...++...+.+...........|+.... ..+
T Consensus 24 ~~~~Ig~i~~~~------~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~ 97 (330)
T PRK10355 24 KEVKIGMAIDDL------RLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN 97 (330)
T ss_pred CCceEEEEecCC------CchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHH
Confidence 456677777543 222333344566655554 4588888887777766666655444333333443322 235
Q ss_pred HHHHHHHcCeEEEcCC
Q 014420 329 HLGHLAWADAFVVTAD 344 (425)
Q Consensus 329 y~~~La~AD~ivVTaD 344 (425)
+...+..+..-||+-|
T Consensus 98 ~l~~~~~~~iPvV~id 113 (330)
T PRK10355 98 VIKEAKQEGIKVLAYD 113 (330)
T ss_pred HHHHHHHCCCeEEEEC
Confidence 6666666665555444
No 209
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=33.71 E-value=1.1e+02 Score=24.32 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCC-CC
Q 014420 219 PDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGP-TG 266 (425)
Q Consensus 219 ~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~-s~ 266 (425)
.+..|++| |.-+.-+-+.+..+-.+...+ .|-++|+-||. .+
T Consensus 2 ~g~rVli~-GgR~~~D~~~i~~~Ld~~~~~-----~~~~~lvhGga~~G 44 (71)
T PF10686_consen 2 EGMRVLIT-GGRDWTDHELIWAALDKVHAR-----HPDMVLVHGGAPKG 44 (71)
T ss_pred CCCEEEEE-ECCccccHHHHHHHHHHHHHh-----CCCEEEEECCCCCC
Confidence 45677777 776666666655443333322 25567888887 55
No 210
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=33.52 E-value=1.6e+02 Score=27.91 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhc-CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCC-ChHHHHHH
Q 014420 278 LTAHLLNVLVSC-GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTAD-SISLISEA 352 (425)
Q Consensus 278 L~~~l~~l~~~~-gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaD-SvSMlsEA 352 (425)
++.++......+ --+.||.|-.|+.- .+.++..-....++....+.+.+|...+++.||..++... +..++-|.
T Consensus 99 f~~ql~~~~~~gDvli~iS~SG~s~~v-~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~~~v~e~ 174 (196)
T PRK10886 99 YAKQVRALGHAGDVLLAISTRGNSRDI-VKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEM 174 (196)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCCCHHH-HHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCchHHHHHH
Confidence 345555444333 24666888888763 3444332222345555567778899999888998887653 55555443
No 211
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.22 E-value=3.4e+02 Score=28.91 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=29.1
Q ss_pred hHHHHHHHcCeEEEcCCCh--------HH--HHHHHHcCCcEEEEcC
Q 014420 328 PHLGHLAWADAFVVTADSI--------SL--ISEACSTGKPVYVVGA 364 (425)
Q Consensus 328 Py~~~La~AD~ivVTaDSv--------SM--lsEA~atGkPV~v~~l 364 (425)
++...|+.||.+|..++|. +. +.-|...||||++++-
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 5677899999999999876 22 3346778999999875
No 212
>PRK10116 universal stress protein UspC; Provisional
Probab=33.19 E-value=92 Score=26.53 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=19.0
Q ss_pred HcCeEEEcCCChHHH------HHHHH--cCCcEEEEcCCC
Q 014420 335 WADAFVVTADSISLI------SEACS--TGKPVYVVGAER 366 (425)
Q Consensus 335 ~AD~ivVTaDSvSMl------sEA~a--tGkPV~v~~l~~ 366 (425)
.+|.+|+..-.-|-+ +|.+. +++||.|+|+++
T Consensus 102 ~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 102 HFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred CCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 456666633333333 33333 588999999875
No 213
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=32.92 E-value=3.8e+02 Score=24.42 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhC-CCCcEEEe--cCCCCChHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELG-NNPKVHIW--DGEEPNPHLG 331 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~-~~~~v~iw--d~~g~NPy~~ 331 (425)
..+++++||+++ ++...++.| ++.+..+.+. +||.++...+.. +.+. ....+.+. |-...+....
T Consensus 5 ~~~vlItG~sg~---iG~~l~~~l-------~~~G~~v~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (248)
T PRK05557 5 GKVALVTGASRG---IGRAIAERL-------AAQGANVVIN-YASSEAGAEALV-AEIGALGGKALAVQGDVSDAESVER 72 (248)
T ss_pred CCEEEEECCCch---HHHHHHHHH-------HHCCCEEEEE-eCCchhHHHHHH-HHHHhcCCceEEEEcCCCCHHHHHH
Confidence 356788888765 444433222 3344555444 444443332222 2221 11233333 4433333433
Q ss_pred HHH-------HcCeEEEcCC
Q 014420 332 HLA-------WADAFVVTAD 344 (425)
Q Consensus 332 ~La-------~AD~ivVTaD 344 (425)
++. ..|.+|..+.
T Consensus 73 ~~~~~~~~~~~id~vi~~ag 92 (248)
T PRK05557 73 AVDEAKAEFGGVDILVNNAG 92 (248)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 333 3589988774
No 214
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=31.96 E-value=70 Score=28.28 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=24.0
Q ss_pred HHHHHHcCeEEEcC-----CChHHHHH---HHHcCCcEEEE
Q 014420 330 LGHLAWADAFVVTA-----DSISLISE---ACSTGKPVYVV 362 (425)
Q Consensus 330 ~~~La~AD~ivVTa-----DSvSMlsE---A~atGkPV~v~ 362 (425)
..+|.++|.+||.. ||..|-.| |.+-|+||++.
T Consensus 74 ~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~~~ 114 (116)
T PF09152_consen 74 RPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVFLY 114 (116)
T ss_dssp HHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEEEH
T ss_pred HHHHHhcceeEEecCCCccccccHHHHHHHHHHcCCeEEEe
Confidence 68999999999997 99999777 56679999875
No 215
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=31.68 E-value=3.1e+02 Score=25.84 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=37.0
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEe--cCCCCChHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIW--DGEEPNPHLGH 332 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iw--d~~g~NPy~~~ 332 (425)
.+++++.||+++ ++.+.+++| ++.+..+.++ +|+..++..+.+.+ .. .++.++ |-...+-+..+
T Consensus 8 ~k~~lItGas~g---IG~aia~~l-------~~~G~~vv~~-~~~~~~~~~~~~~~-~~--~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTG---LGQGMAIGL-------AKAGADIVGV-GVAEAPETQAQVEA-LG--RKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCch---HHHHHHHHH-------HHCCCEEEEe-cCchHHHHHHHHHH-cC--CeEEEEEeCCCCHHHHHHH
Confidence 467888888776 555443333 3344555543 45433444444432 22 233333 43333334344
Q ss_pred HH-------HcCeEEEcCC
Q 014420 333 LA-------WADAFVVTAD 344 (425)
Q Consensus 333 La-------~AD~ivVTaD 344 (425)
+. .-|.+|..+.
T Consensus 74 ~~~~~~~~g~iD~lv~~ag 92 (251)
T PRK12481 74 VSQAVEVMGHIDILINNAG 92 (251)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 33 3477776654
No 216
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=31.64 E-value=88 Score=26.37 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHcCeEEEcCCC----hHHHHH---HHHcCCcEEEEcCCCC
Q 014420 330 LGHLAWADAFVVTADS----ISLISE---ACSTGKPVYVVGAERC 367 (425)
Q Consensus 330 ~~~La~AD~ivVTaDS----vSMlsE---A~atGkPV~v~~l~~~ 367 (425)
...+..||.+|+-=|. .....| |.+.||||+++.....
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~ 100 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDR 100 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCc
Confidence 4778889988875443 777888 6778999999976543
No 217
>PRK09072 short chain dehydrogenase; Provisional
Probab=31.56 E-value=4e+02 Score=25.08 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEe--cCCCCChHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIW--DGEEPNPHLGH 332 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iw--d~~g~NPy~~~ 332 (425)
..+++++||+++ ++.+.++.+ ++++..+.++ +|+ ++...+ +.+.+....++.+. |-...+.+..+
T Consensus 5 ~~~vlItG~s~~---iG~~ia~~l-------~~~G~~V~~~-~r~-~~~~~~-~~~~~~~~~~~~~~~~D~~d~~~~~~~ 71 (263)
T PRK09072 5 DKRVLLTGASGG---IGQALAEAL-------AAAGARLLLV-GRN-AEKLEA-LAARLPYPGRHRWVVADLTSEAGREAV 71 (263)
T ss_pred CCEEEEECCCch---HHHHHHHHH-------HHCCCEEEEE-ECC-HHHHHH-HHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 356888898876 444433333 3345555444 443 444433 33333222244333 43333333333
Q ss_pred H------HHcCeEEEcCCC
Q 014420 333 L------AWADAFVVTADS 345 (425)
Q Consensus 333 L------a~AD~ivVTaDS 345 (425)
. ...|.+|..+..
T Consensus 72 ~~~~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 72 LARAREMGGINVLINNAGV 90 (263)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 2 345999988764
No 218
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=31.20 E-value=3.2e+02 Score=25.56 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=12.1
Q ss_pred CCcEEEEEcCCCCCcccCHHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLA 275 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a 275 (425)
+.++++++||+++ ++...+
T Consensus 8 ~~k~~lItGas~g---iG~~ia 26 (254)
T PRK08085 8 AGKNILITGSAQG---IGFLLA 26 (254)
T ss_pred CCCEEEEECCCCh---HHHHHH
Confidence 3457888888775 444433
No 219
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=31.17 E-value=3.6e+02 Score=28.85 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=57.3
Q ss_pred cCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCCCCCCccEEEeccCCCCCCCccccccchhhhhcccCCCCCC
Q 014420 140 EKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPP 219 (425)
Q Consensus 140 ~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~ 219 (425)
.+...-+|||.|-.+...++.+....++. + --+||++.-+.- .
T Consensus 35 ~p~gr~~Vig~GKAs~~MA~a~~~~~~~~---~-----------~GvVVt~~g~~~-----------------------~ 77 (422)
T COG2379 35 PPKGRTIVIGAGKASAEMARAFEEHWKGP---L-----------AGVVVTPYGYGG-----------------------P 77 (422)
T ss_pred CCCCceEEEecchhHHHHHHHHHHHhccc---c-----------CceEeccCccCC-----------------------C
Confidence 44567899999999999999888766331 0 113444433321 2
Q ss_pred CCcEEEecCCCCcCChHHHHHHHHhhhhhhCCC-CCCcEE-EEEcCCCCCcccC
Q 014420 220 DGHVVLTTGALHQIDSAALRSAASAWHEEFAPL-PKPLVV-VNVGGPTGCCRYG 271 (425)
Q Consensus 220 ~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~l-p~p~va-vLIGG~s~~~~~~ 271 (425)
-+++-+..+ -||+..+.=-.+.++..+.+..+ +.-+|+ ++-||-|.=+.+.
T Consensus 78 ~~~ieViea-~HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL~e~P 130 (422)
T COG2379 78 CPRIEVIEA-GHPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGSALLELP 130 (422)
T ss_pred CCceeEEeC-CCCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhhccCC
Confidence 245555544 48999876545555666666655 555554 4557766666665
No 220
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=31.14 E-value=4e+02 Score=24.32 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 325 EPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 325 g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
...-+..+++.+|.+|.+-= -+.|. |++.|+|++.+...
T Consensus 247 ~~~~~~~~~~~~~~~Is~Rl-H~~I~-a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRL-HGAIL-ALSLGVPVIAISYD 285 (286)
T ss_pred CHHHHHHHHhcCCEEEecCC-HHHHH-HHHcCCCEEEEecC
Confidence 34458999999999998765 44444 89999999998764
No 221
>PRK10586 putative oxidoreductase; Provisional
Probab=30.92 E-value=2.5e+02 Score=29.09 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=57.9
Q ss_pred EEcCCCCCcccCHHHHHHHHHHHHHHHHh-c-CeEEEEeCCCCcHHHHHHHHHhhCCC-CcEEEecCCCCChHHHHH---
Q 014420 260 NVGGPTGCCRYGSDLAKQLTAHLLNVLVS-C-GSIRISFSMRTPEKVSKIIIKELGNN-PKVHIWDGEEPNPHLGHL--- 333 (425)
Q Consensus 260 LIGG~s~~~~~~~~~a~~L~~~l~~l~~~-~-gsl~iT~SRRTP~~~~~~L~~~l~~~-~~v~iwd~~g~NPy~~~L--- 333 (425)
+++|+ .+|..++....++ .+++.. + .+.+|.+..++-+.....+.+.|... -.+..+++.-.++-..-+
T Consensus 8 ~~~~p-~~y~~G~ga~~~l----~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~ 82 (362)
T PRK10586 8 VVVGP-ANYFSHPGSIDHL----HDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAA 82 (362)
T ss_pred heeCC-cceEECcCHHHHH----HHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHH
Confidence 46777 5566777664444 344443 2 47888888888877766666666542 123334443333322222
Q ss_pred --HHcCeEEEcCC-ChHHHHHHHHc--CCcEEEEcCC
Q 014420 334 --AWADAFVVTAD-SISLISEACST--GKPVYVVGAE 365 (425)
Q Consensus 334 --a~AD~ivVTaD-SvSMlsEA~at--GkPV~v~~l~ 365 (425)
..+|.||.-++ |+-=++=+++. ++|++.+|-.
T Consensus 83 ~~~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 83 SGDDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred hccCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCC
Confidence 23589996555 44334444443 7899999853
No 222
>PRK12743 oxidoreductase; Provisional
Probab=30.70 E-value=4.4e+02 Score=24.76 Aligned_cols=77 Identities=19% Similarity=0.131 Sum_probs=37.0
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhC-CCCcEEEe--cCCCCChHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELG-NNPKVHIW--DGEEPNPHLGH 332 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~-~~~~v~iw--d~~g~NPy~~~ 332 (425)
.++++.||+++ ++...++.| ++.+.++.++ .||+.+....... .+. ....+.++ |-....-...+
T Consensus 3 k~vlItGas~g---iG~~~a~~l-------~~~G~~V~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (256)
T PRK12743 3 QVAIVTASDSG---IGKACALLL-------AQQGFDIGIT-WHSDEEGAKETAE-EVRSHGVRAEIRQLDLSDLPEGAQA 70 (256)
T ss_pred CEEEEECCCch---HHHHHHHHH-------HHCCCEEEEE-eCCChHHHHHHHH-HHHhcCCceEEEEccCCCHHHHHHH
Confidence 46788998776 555443333 3344455444 3555555433332 222 11234443 43222222233
Q ss_pred H-------HHcCeEEEcCC
Q 014420 333 L-------AWADAFVVTAD 344 (425)
Q Consensus 333 L-------a~AD~ivVTaD 344 (425)
+ ..-|.+|..+.
T Consensus 71 ~~~~~~~~~~id~li~~ag 89 (256)
T PRK12743 71 LDKLIQRLGRIDVLVNNAG 89 (256)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 3 23588887664
No 223
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=30.56 E-value=79 Score=35.27 Aligned_cols=48 Identities=15% Similarity=-0.018 Sum_probs=35.2
Q ss_pred HHHHHHHcCeEEEcC---CChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHH
Q 014420 329 HLGHLAWADAFVVTA---DSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRE 380 (425)
Q Consensus 329 y~~~La~AD~ivVTa---DSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~ 380 (425)
|.+++..||.+|..+ .---.+-||+++|+||++-... .|..++.....
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~----gf~~~v~E~v~ 518 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLS----GFGCFMEEHIE 518 (590)
T ss_pred hHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCc----chhhhhHHHhc
Confidence 789999999999955 3345688999999999987654 34344444443
No 224
>PLN02208 glycosyltransferase family protein
Probab=30.42 E-value=2.2e+02 Score=30.33 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=56.8
Q ss_pred CeEEEEe-CCCC-cHH-HHHHHHH-hhCCCCcEEEecCC-C------------------CC-------hHHHHHHHcCe-
Q 014420 290 GSIRISF-SMRT-PEK-VSKIIIK-ELGNNPKVHIWDGE-E------------------PN-------PHLGHLAWADA- 338 (425)
Q Consensus 290 gsl~iT~-SRRT-P~~-~~~~L~~-~l~~~~~v~iwd~~-g------------------~N-------Py~~~La~AD~- 338 (425)
+-+|||+ |--+ +++ ..+.... ++...+..++|..+ + .| |-.+.|+....
T Consensus 252 sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~ 331 (442)
T PLN02208 252 SVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIG 331 (442)
T ss_pred cEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccC
Confidence 4577766 3333 444 4444443 35566777777421 1 11 45678888773
Q ss_pred -EEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHH-CCCeeecC
Q 014420 339 -FVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRE-RGVVRPFT 388 (425)
Q Consensus 339 -ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~-~G~~r~f~ 388 (425)
+|.=++ -|.+.||++.|+|+..+|.-.-...- .+.+.+ .|+...++
T Consensus 332 ~FvtHcG-~nS~~Eai~~GVP~l~~P~~~DQ~~n---a~~~~~~~g~gv~~~ 379 (442)
T PLN02208 332 CFVNHCG-PGTIWESLVSDCQMVLIPFLSDQVLF---TRLMTEEFEVSVEVS 379 (442)
T ss_pred eEEccCC-chHHHHHHHcCCCEEecCcchhhHHH---HHHHHHHhceeEEec
Confidence 555555 99999999999999999875332222 233343 56665553
No 225
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=30.28 E-value=4.4e+02 Score=24.32 Aligned_cols=80 Identities=11% Similarity=0.053 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEE--ecCCCCChHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHI--WDGEEPNPHLGH 332 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~i--wd~~g~NPy~~~ 332 (425)
.++++++||+++ ++...+++| ++.+..+.+... |.++...+.+.+.-.....+.. .|-........+
T Consensus 3 ~k~~lVtG~s~g---iG~~~a~~l-------~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (246)
T PRK12938 3 QRIAYVTGGMGG---IGTSICQRL-------HKDGFKVVAGCG-PNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAA 71 (246)
T ss_pred CCEEEEECCCCh---HHHHHHHHH-------HHcCCEEEEEcC-CChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 468899999876 555443333 334556655444 4444444444331111123333 344333334444
Q ss_pred HH-------HcCeEEEcCCC
Q 014420 333 LA-------WADAFVVTADS 345 (425)
Q Consensus 333 La-------~AD~ivVTaDS 345 (425)
+. .-|.+|-.+..
T Consensus 72 ~~~~~~~~~~id~li~~ag~ 91 (246)
T PRK12938 72 FDKVKAEVGEIDVLVNNAGI 91 (246)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 43 35888888763
No 226
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=30.23 E-value=1.1e+02 Score=29.03 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=60.6
Q ss_pred EecCCCCCCCCccEEEeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCC
Q 014420 173 QIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPL 252 (425)
Q Consensus 173 ~i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~l 252 (425)
.+.+|+.+..+|-.+++.. |+..+|++..|++..-..+.|... +...
T Consensus 49 a~~~p~yD~eRfGi~~~aS--------------------------PRhADvLlVtG~vT~km~~~l~~~-------yeqm 95 (173)
T PRK14818 49 QTGGPRADVMRFGAIPRAS--------------------------PRQADFMIVAGTLTYKMAERARLL-------YDQM 95 (173)
T ss_pred HhcCCccCHHHcCCeecCC--------------------------cccccEEEEeCcCccccHHHHHHH-------HHhC
Confidence 3456777777777655531 355788888899655555554432 2347
Q ss_pred CCCcEEEEEcC--CCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHh
Q 014420 253 PKPLVVVNVGG--PTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKE 311 (425)
Q Consensus 253 p~p~vavLIGG--~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~ 311 (425)
|+|+++|-+|. .++..-++.- .....+.+++ .-.++|---.=+|+.+.+.|.+.
T Consensus 96 PePK~VIA~G~CA~sGGif~~sY---~~~~gvd~vI--pVDvyIPGCPP~PeaIl~gil~L 151 (173)
T PRK14818 96 PEPKYVISMGSCSNCGGLFQLGY---SVCKGVDKVI--PVDVYVPGCPPRPEALTEGLLRL 151 (173)
T ss_pred CCCCEEEEeccccccCCcccCCc---ccccCCCCcc--CCcEEccCCCCCHHHHHHHHHHH
Confidence 99999999996 4444333211 0112222222 13577777788888887777543
No 227
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=29.91 E-value=2.6e+02 Score=26.07 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHh--cCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCCh--HHHHHHHc--CeEEEcCCC--
Q 014420 274 LAKQLTAHLLNVLVS--CGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNP--HLGHLAWA--DAFVVTADS-- 345 (425)
Q Consensus 274 ~a~~L~~~l~~l~~~--~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NP--y~~~La~A--D~ivVTaDS-- 345 (425)
+...+..-+..+..+ +.+++||++--|+.+..... +.+...+.+.+. +.| +..+|..- |.+|+.+.-
T Consensus 33 E~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~---~~~~v~~~~~P~--D~~~~~~rfl~~~~P~~~i~~EtElW 107 (186)
T PF04413_consen 33 EVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL---LPDRVDVQYLPL--DFPWAVRRFLDHWRPDLLIWVETELW 107 (186)
T ss_dssp HHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG----GGG-SEEE-----SSHHHHHHHHHHH--SEEEEES----
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh---CCCCeEEEEeCc--cCHHHHHHHHHHhCCCEEEEEccccC
Confidence 333443444444433 46999999988888765433 222122323333 334 34555543 666666553
Q ss_pred hHHHHHHHHcCCcEEEEcC
Q 014420 346 ISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 346 vSMlsEA~atGkPV~v~~l 364 (425)
-|||.+|-..|.|++++..
T Consensus 108 Pnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 108 PNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHHH-----S-EEEEEE
T ss_pred HHHHHHHhhcCCCEEEEee
Confidence 4999999999999999974
No 228
>PLN02764 glycosyltransferase family protein
Probab=29.89 E-value=1.9e+02 Score=31.06 Aligned_cols=56 Identities=16% Similarity=0.020 Sum_probs=39.1
Q ss_pred hHHHHHHHc--CeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHH-HCCCeeec
Q 014420 328 PHLGHLAWA--DAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLR-ERGVVRPF 387 (425)
Q Consensus 328 Py~~~La~A--D~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~-~~G~~r~f 387 (425)
|....|+.. +.+|.=++ -|.+.||++.|+|++++|.-......+ +.+. +.|....+
T Consensus 326 PQ~~vL~h~~v~~FvtH~G-~nS~~Eal~~GVP~l~~P~~~DQ~~na---~~l~~~~g~gv~~ 384 (453)
T PLN02764 326 QQPLILSHPSVGCFVSHCG-FGSMWESLLSDCQIVLVPQLGDQVLNT---RLLSDELKVSVEV 384 (453)
T ss_pred CHHHHhcCcccCeEEecCC-chHHHHHHHcCCCEEeCCcccchHHHH---HHHHHHhceEEEe
Confidence 678888885 44776677 888999999999999998754333333 3443 45665444
No 229
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=29.43 E-value=1.7e+02 Score=27.58 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCCcccCHHHH----HHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCC-ChHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLA----KQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEP-NPHL 330 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a----~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~-NPy~ 330 (425)
..+||-||.++.+ =+...+ +.|.+.+.+.+....+..|.++.|.... ... ....+ +.|..+. .|..
T Consensus 6 ~~vILAGG~srRm-~dK~l~~~~g~~lie~v~~~L~~~~~~vvi~~~~~~~~-----~~~--~g~~v-v~D~~~~~GPL~ 76 (192)
T COG0746 6 TGVILAGGKSRRM-RDKALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQGR-----YAE--FGLPV-VPDELPGFGPLA 76 (192)
T ss_pred eEEEecCCccccc-cccccceeCCeEHHHHHHHHhcccCCEEEEeCCCchhh-----hhc--cCCce-eecCCCCCCCHH
Confidence 3578889988887 322211 2233333344443334455555554442 111 21223 5665444 8987
Q ss_pred HHHHHc------CeEEEcCCC
Q 014420 331 GHLAWA------DAFVVTADS 345 (425)
Q Consensus 331 ~~La~A------D~ivVTaDS 345 (425)
|+++.- ..+|+-+|.
T Consensus 77 Gi~~al~~~~~~~~~v~~~D~ 97 (192)
T COG0746 77 GILAALRHFGTEWVLVLPCDM 97 (192)
T ss_pred HHHHHHHhCCCCeEEEEecCC
Confidence 777653 445666664
No 230
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=29.42 E-value=4.2e+02 Score=24.52 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHL 333 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~L 333 (425)
+.+.++++||+++ ++...+++| ++++.++.++. |+..++..+.+.+ +......+..|-....-...++
T Consensus 4 ~~k~vlItGas~g---IG~~ia~~l-------~~~G~~vi~~~-r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~ 71 (248)
T TIGR01832 4 EGKVALVTGANTG---LGQGIAVGL-------AEAGADIVGAG-RSEPSETQQQVEA-LGRRFLSLTADLSDIEAIKALV 71 (248)
T ss_pred CCCEEEEECCCch---HHHHHHHHH-------HHCCCEEEEEc-CchHHHHHHHHHh-cCCceEEEECCCCCHHHHHHHH
Confidence 3567888888765 555444333 33444655554 4433444455433 2221122223443333333333
Q ss_pred H-------HcCeEEEcCC
Q 014420 334 A-------WADAFVVTAD 344 (425)
Q Consensus 334 a-------~AD~ivVTaD 344 (425)
. .-|.+|..+.
T Consensus 72 ~~~~~~~~~~d~li~~ag 89 (248)
T TIGR01832 72 DSAVEEFGHIDILVNNAG 89 (248)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 2 3578877664
No 231
>PRK07478 short chain dehydrogenase; Provisional
Probab=29.26 E-value=3.5e+02 Score=25.24 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHHHH
Q 014420 402 LNDTAEAASRVHEALA 417 (425)
Q Consensus 402 L~et~r~A~~I~~~l~ 417 (425)
+.+.+++|+.+...+.
T Consensus 217 ~~~~~~va~~~~~l~s 232 (254)
T PRK07478 217 MAQPEEIAQAALFLAS 232 (254)
T ss_pred CcCHHHHHHHHHHHcC
Confidence 3456677777766554
No 232
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=29.02 E-value=2.4e+02 Score=26.18 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=7.9
Q ss_pred cEEEEEcCCCC
Q 014420 256 LVVVNVGGPTG 266 (425)
Q Consensus 256 ~vavLIGG~s~ 266 (425)
..++++||+++
T Consensus 5 ~~vlItG~sg~ 15 (258)
T PRK12429 5 KVALVTGAASG 15 (258)
T ss_pred CEEEEECCCch
Confidence 46778888765
No 233
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.58 E-value=3.5e+02 Score=28.58 Aligned_cols=146 Identities=18% Similarity=0.115 Sum_probs=86.7
Q ss_pred cccCHHHHHHHHHHHHHHHHhc-CeEEEEeCCCCcHHHHHHHHHh-hC-------CCCcEEEecCCCCChHHHHHHHcCe
Q 014420 268 CRYGSDLAKQLTAHLLNVLVSC-GSIRISFSMRTPEKVSKIIIKE-LG-------NNPKVHIWDGEEPNPHLGHLAWADA 338 (425)
Q Consensus 268 ~~~~~~~a~~L~~~l~~l~~~~-gsl~iT~SRRTP~~~~~~L~~~-l~-------~~~~v~iwd~~g~NPy~~~La~AD~ 338 (425)
|.|.......|+++++ ... .-..+.+.-|+-..+...+-.. +. ..-.+.+-++...+-|..+|-.||.
T Consensus 188 F~Ye~~al~~ll~~~~---~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~ 264 (371)
T TIGR03837 188 FCYENAALPALLDALA---QSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL 264 (371)
T ss_pred EecCChhHHHHHHHHH---hCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh
Confidence 4566654434444432 222 3456678888888887776321 11 1123456677777889999999999
Q ss_pred EEEcCCChHHHHHHHHcCCcEEEEcCCCCC----hhHHHHHHHHHHCCC-------ee----ecCCCCCCCCCCCC--Cc
Q 014420 339 FVVTADSISLISEACSTGKPVYVVGAERCT----WKFTDFHKSLRERGV-------VR----PFTGSEDMSDSWSY--PP 401 (425)
Q Consensus 339 ivVTaDSvSMlsEA~atGkPV~v~~l~~~~----~k~~rf~~~L~~~G~-------~r----~f~g~~~~~~~~~~--~P 401 (425)
=+|++. -|.|- |--+|||.+=--+|... .|...|++... .++ ++ .+++..+..+.|.+ .-
T Consensus 265 NfVRGE-DSFVR-AqWAgkPfvWhIYPQeddaHl~KL~AFL~~y~-~~l~~~~~~al~~~~~awN~~~~~~~~W~~l~~~ 341 (371)
T TIGR03837 265 NFVRGE-DSFVR-AQWAGKPFVWHIYPQEEDAHLAKLEAFLDLYC-AGLAPEAAAALRAFWRAWNGGGALSADWPALRAA 341 (371)
T ss_pred cEeech-hHHHH-HHHcCCCceeecccCchhhHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHhCCCchhhhHHHHHHh
Confidence 999998 77776 99999998765555543 37777766443 343 22 33432222234555 22
Q ss_pred chHHHHHHHHHHHHHHhc
Q 014420 402 LNDTAEAASRVHEALAER 419 (425)
Q Consensus 402 L~et~r~A~~I~~~l~~~ 419 (425)
+.+-.+.|..=...|.+.
T Consensus 342 ~~~l~~~a~~w~~~l~~~ 359 (371)
T TIGR03837 342 LPEWQQHAQAWAARLAAQ 359 (371)
T ss_pred hHHHHHHHHHHHHHHhhC
Confidence 344455555555555443
No 234
>PRK06114 short chain dehydrogenase; Provisional
Probab=28.43 E-value=4.9e+02 Score=24.38 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCC-CCcEEEe--cCCCCChHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGN-NPKVHIW--DGEEPNPHLG 331 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~-~~~v~iw--d~~g~NPy~~ 331 (425)
.+++++.||+++ ++.+.+++| ++.+.++.++ +|+.++...+.+ +.+.. ...+..+ |-...+-...
T Consensus 8 ~k~~lVtG~s~g---IG~~ia~~l-------~~~G~~v~~~-~r~~~~~~~~~~-~~l~~~~~~~~~~~~D~~~~~~i~~ 75 (254)
T PRK06114 8 GQVAFVTGAGSG---IGQRIAIGL-------AQAGADVALF-DLRTDDGLAETA-EHIEAAGRRAIQIAADVTSKADLRA 75 (254)
T ss_pred CCEEEEECCCch---HHHHHHHHH-------HHCCCEEEEE-eCCcchHHHHHH-HHHHhcCCceEEEEcCCCCHHHHHH
Confidence 457889998876 555443333 3344566554 455443333222 22221 1223333 4433333444
Q ss_pred HHHHc-------CeEEEcCC
Q 014420 332 HLAWA-------DAFVVTAD 344 (425)
Q Consensus 332 ~La~A-------D~ivVTaD 344 (425)
++... |.+|-.+.
T Consensus 76 ~~~~~~~~~g~id~li~~ag 95 (254)
T PRK06114 76 AVARTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 44443 78887765
No 235
>PRK07904 short chain dehydrogenase; Provisional
Probab=28.35 E-value=3.5e+02 Score=25.67 Aligned_cols=40 Identities=13% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcC-eEEEEeCCCCcH
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCG-SIRISFSMRTPE 302 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~g-sl~iT~SRRTP~ 302 (425)
...+.++++.||+++ ++.+.++++ ++++| .+.++ +|+...
T Consensus 5 ~~~~~~vlItGas~g---iG~~la~~l-------~~~gg~~V~~~-~r~~~~ 45 (253)
T PRK07904 5 VGNPQTILLLGGTSE---IGLAICERY-------LKNAPARVVLA-ALPDDP 45 (253)
T ss_pred cCCCcEEEEEcCCcH---HHHHHHHHH-------HhcCCCeEEEE-eCCcch
Confidence 456778899999876 555443333 34443 55554 555443
No 236
>PF03771 SPDY: Domain of unknown function (DUF317); InterPro: IPR005523 This domain is currently found in streptomyces bacteria, in a set of bacterial proteins with no known function. Most proteins contain two copies of this domain.
Probab=28.30 E-value=78 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=22.6
Q ss_pred CeEEEEeCCCCcHHHHHHHHHhhCC
Q 014420 290 GSIRISFSMRTPEKVSKIIIKELGN 314 (425)
Q Consensus 290 gsl~iT~SRRTP~~~~~~L~~~l~~ 314 (425)
..|..+++..||.++...+...|.+
T Consensus 33 ~~W~A~F~~~TP~elvaaf~~aLa~ 57 (63)
T PF03771_consen 33 PGWTATFTPDTPAELVAAFTAALAD 57 (63)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHcc
Confidence 4799999999999999999888865
No 237
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=28.17 E-value=4.2e+02 Score=24.99 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKI 307 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~ 307 (425)
+.++++++||+++ ++.+.+++| ++.+..+.+ .+||.+++..+.
T Consensus 7 ~~k~vlItGas~g---IG~~ia~~l-------~~~G~~v~~-~~~~~~~~~~~~ 49 (260)
T PRK08416 7 KGKTLVISGGTRG---IGKAIVYEF-------AQSGVNIAF-TYNSNVEEANKI 49 (260)
T ss_pred CCCEEEEeCCCch---HHHHHHHHH-------HHCCCEEEE-EcCCCHHHHHHH
Confidence 4568899999877 555544333 334445544 466776655443
No 238
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=27.88 E-value=5.1e+02 Score=24.30 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPE 302 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~ 302 (425)
+.++++++||+++ ++.+.++.| ++.+..+.++ +|+.++
T Consensus 6 ~~k~~lItGa~~g---IG~~ia~~l-------~~~G~~vvi~-~~~~~~ 43 (261)
T PRK08936 6 EGKVVVITGGSTG---LGRAMAVRF-------GKEKAKVVIN-YRSDEE 43 (261)
T ss_pred CCCEEEEeCCCCh---HHHHHHHHH-------HHCCCEEEEE-eCCCHH
Confidence 3457788888776 444433332 3344455554 554443
No 239
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=27.77 E-value=6e+02 Score=25.04 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=52.2
Q ss_pred HHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEe-----cCCCCChHH---HHHHHcCeEEEcCCC-hHHHHHHHH
Q 014420 284 NVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIW-----DGEEPNPHL---GHLAWADAFVVTADS-ISLISEACS 354 (425)
Q Consensus 284 ~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iw-----d~~g~NPy~---~~La~AD~ivVTaDS-vSMlsEA~a 354 (425)
+.+.+-..+.+...=+|-+++...|+. ++ |...+- |++|.+=.. ..--..|.|++|+.| +..|+||.-
T Consensus 18 ~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr 94 (224)
T COG4565 18 RYVKQIPGFSVVGTAGTLEEAKMIIEE-FK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALR 94 (224)
T ss_pred HHHHhCCCceEEEeeccHHHHHHHHHh-hC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHh
Confidence 455554566777777899999999875 33 345444 344443221 222248999999865 678999999
Q ss_pred cCCcEEEEcC
Q 014420 355 TGKPVYVVGA 364 (425)
Q Consensus 355 tGkPV~v~~l 364 (425)
.|.==|++.+
T Consensus 95 ~Gv~DYLiKP 104 (224)
T COG4565 95 YGVVDYLIKP 104 (224)
T ss_pred cCchhheecc
Confidence 9987777754
No 240
>PRK08643 acetoin reductase; Validated
Probab=27.51 E-value=3.1e+02 Score=25.62 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCC-CCcEEEe--cCCCCChHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGN-NPKVHIW--DGEEPNPHLGH 332 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~-~~~v~iw--d~~g~NPy~~~ 332 (425)
++++++||+++ ++...++.| ++.+..+.++ +|+ ++...+.. ..+.. ...+.++ |-+..+-+..+
T Consensus 3 k~~lItGas~g---iG~~la~~l-------~~~G~~v~~~-~r~-~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (256)
T PRK08643 3 KVALVTGAGQG---IGFAIAKRL-------VEDGFKVAIV-DYN-EETAQAAA-DKLSKDGGKAIAVKADVSDRDQVFAA 69 (256)
T ss_pred CEEEEECCCCh---HHHHHHHHH-------HHCCCEEEEE-eCC-HHHHHHHH-HHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 47888898876 555433333 3344455444 444 33332222 22221 1234333 44333344444
Q ss_pred HHH-------cCeEEEcCC
Q 014420 333 LAW-------ADAFVVTAD 344 (425)
Q Consensus 333 La~-------AD~ivVTaD 344 (425)
+.. -|.+|..+.
T Consensus 70 ~~~~~~~~~~id~vi~~ag 88 (256)
T PRK08643 70 VRQVVDTFGDLNVVVNNAG 88 (256)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 443 488888774
No 241
>PRK08267 short chain dehydrogenase; Provisional
Probab=27.50 E-value=3.3e+02 Score=25.53 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEE--ecCCCCChHHHHHH
Q 014420 257 VVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHI--WDGEEPNPHLGHLA 334 (425)
Q Consensus 257 vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~i--wd~~g~NPy~~~La 334 (425)
.++++||+++ ++...++.| ++++..+.+. +| +++...+ +.+.+.. ..+.+ -|-...+-....+.
T Consensus 3 ~vlItGasg~---iG~~la~~l-------~~~G~~V~~~-~r-~~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 3 SIFITGAASG---IGRATALLF-------AAEGWRVGAY-DI-NEAGLAA-LAAELGA-GNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred EEEEeCCCch---HHHHHHHHH-------HHCCCeEEEE-eC-CHHHHHH-HHHHhcC-CceEEEEecCCCHHHHHHHHH
Confidence 5788888875 444433333 3334344444 44 4444333 3333331 23333 35444444444444
Q ss_pred H--------cCeEEEcCCC
Q 014420 335 W--------ADAFVVTADS 345 (425)
Q Consensus 335 ~--------AD~ivVTaDS 345 (425)
. -|.+|..+..
T Consensus 69 ~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 69 DFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHcCCCCCEEEECCCC
Confidence 3 3888887763
No 242
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=27.24 E-value=4.7e+02 Score=24.50 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=61.9
Q ss_pred EEEcCCCCCcccCHHHHHHHHHH----HHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcE-EEe-cCCCCChHHH-
Q 014420 259 VNVGGPTGCCRYGSDLAKQLTAH----LLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKV-HIW-DGEEPNPHLG- 331 (425)
Q Consensus 259 vLIGG~s~~~~~~~~~a~~L~~~----l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v-~iw-d~~g~NPy~~- 331 (425)
.+.|=-++-+-+|-+........ +.++...+|.+++..+|.--.+..+...+.... ..+ .-| +|.=.|...-
T Consensus 22 yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~-~~i~~rw~~G~LTN~~~~~ 100 (193)
T cd01425 22 YIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGS-FYVNGRWLGGTLTNWKTIR 100 (193)
T ss_pred heecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-eeecCeecCCcCCCHHHHH
Confidence 35665666677776543322222 233334467777777766444444444443322 122 124 4455676432
Q ss_pred -----------------------HHHHcCeEEEcC--CChHHHHHHHHcCCcEEEEcC
Q 014420 332 -----------------------HLAWADAFVVTA--DSISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 332 -----------------------~La~AD~ivVTa--DSvSMlsEA~atGkPV~v~~l 364 (425)
+-..=|++||+- ...+-+-||...|.|++-+--
T Consensus 101 ~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~D 158 (193)
T cd01425 101 KSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVD 158 (193)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEec
Confidence 445678999986 457789999999999988753
No 243
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.05 E-value=2.6e+02 Score=26.02 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCC
Q 014420 257 VVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMR 299 (425)
Q Consensus 257 vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRR 299 (425)
.++++||+++ ++...++.| ++++.++.++ +|.
T Consensus 3 ~vlItGasgg---iG~~ia~~l-------~~~g~~V~~~-~r~ 34 (251)
T PRK06924 3 YVIITGTSQG---LGEAIANQL-------LEKGTHVISI-SRT 34 (251)
T ss_pred EEEEecCCch---HHHHHHHHH-------HhcCCEEEEE-eCC
Confidence 5788888775 444433333 3344466554 443
No 244
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=26.70 E-value=7.5e+02 Score=25.84 Aligned_cols=103 Identities=20% Similarity=0.195 Sum_probs=61.8
Q ss_pred HhhhhccCCCCcEEEEecCcchHHHHHHHHHcCCCeEEEEecCCCCCCCCccEEEeccCCCCCCCccccccchhhhhccc
Q 014420 134 MARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWI 213 (425)
Q Consensus 134 ~a~~~l~~~~PdLVI~~Gr~t~~~~~~lrr~~~~~~~vV~i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~ 213 (425)
.|.+.+.....|.+||+|...+..+...-+....+ .|.+|-+ +.++|.-+
T Consensus 87 ~Ai~lVkeg~ADa~VSAGnTGAlma~a~~~lg~i~----gI~RPAi------~~~~Pt~~-------------------- 136 (338)
T COG0416 87 VALDLVKEGKADACVSAGNTGALMALALLKLGRIK----GIDRPAL------ATLLPTID-------------------- 136 (338)
T ss_pred HHHHHHhcCcCCEEEecCchHHHHHHHHHHhccCC----CCCccce------eeeccccC--------------------
Confidence 44566778889999999988766665554433221 2345543 23444433
Q ss_pred CCCCCCCCcEEEecCCCCcCChHHHHHH---HHhhhhhhCCCCCCcEEEEEcC--CCCCcccC
Q 014420 214 TPCEPPDGHVVLTTGALHQIDSAALRSA---ASAWHEEFAPLPKPLVVVNVGG--PTGCCRYG 271 (425)
Q Consensus 214 ~~~~~~~~NVl~T~Galh~v~~~~L~~a---~~~~~~~l~~lp~p~vavLIGG--~s~~~~~~ 271 (425)
.+.-+++-+|+=-..+|+.|.+- .....+.+-...+|+|++|==| ..|...+.
T Consensus 137 -----~~~~~~LDvGANvd~~~~~L~qfA~MG~~ya~~v~~~~~PrVgLLNIG~Ee~KG~e~~ 194 (338)
T COG0416 137 -----GGKTVVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIKNPRVGLLNIGTEEIKGNELV 194 (338)
T ss_pred -----CCceEEEeCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecccccccCCHHH
Confidence 23457788899667778877543 3344545545568998877545 34444333
No 245
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=26.65 E-value=1.6e+02 Score=26.61 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=37.8
Q ss_pred hhhccCCCCcEEEEecCcchHH-HHHHHHHcCC-CeEE-EEec-----CCCCCCCCccEEEeccCCC
Q 014420 136 RETYEKDGPLLVVASGRDTISI-ASSIKRLASD-NVFV-VQIQ-----HPRVHLNRFDLVITPRHDY 194 (425)
Q Consensus 136 ~~~l~~~~PdLVI~~Gr~t~~~-~~~lrr~~~~-~~~v-V~i~-----~Pr~~~~~FDlVivP~HD~ 194 (425)
.+.++..+||+||+|=-....+ ...+|++... ++.+ ..+- |+.+-....|+-+|+..+.
T Consensus 82 ~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W~~~~~D~y~Vase~~ 148 (169)
T PF06925_consen 82 IRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFWIHPGVDRYFVASEEV 148 (169)
T ss_pred HHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCeecCCCCEEEECCHHH
Confidence 4567788999999986554444 4445665544 2322 2222 4556777889999987664
No 246
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=26.55 E-value=3.7e+02 Score=24.49 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=46.4
Q ss_pred EEEcCCChHHHHHHHHc--CCcEEEEcCCCCC-hhHHHHHHHHHHCCCeeecCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 014420 339 FVVTADSISLISEACST--GKPVYVVGAERCT-WKFTDFHKSLRERGVVRPFTGSEDMSDSWSYPPLNDTAEAASRVHEA 415 (425)
Q Consensus 339 ivVTaDSvSMlsEA~at--GkPV~v~~l~~~~-~k~~rf~~~L~~~G~~r~f~g~~~~~~~~~~~PL~et~r~A~~I~~~ 415 (425)
|+|.+- -+.++.++-. ....-++...+.. .-...+++.|.+.|..-.+.|..| -+--+||+.+.++
T Consensus 21 V~VvEN-p~Vf~~~~~~~~~~~~pLVCt~G~p~~A~~~LL~~L~~~g~~l~y~GDfD----------p~Gl~IA~~l~~r 89 (152)
T PF09664_consen 21 VYVVEN-PAVFSALADELGASCPPLVCTSGQPSAAARRLLDRLAAAGARLYYSGDFD----------PEGLRIANRLIQR 89 (152)
T ss_pred EEEEec-HHHHHHHHHhcCCCCCeEEEcCCcHHHHHHHHHHHHHhCCCEEEEecCCC----------HHHHHHHHHHHHH
Confidence 444443 4445555544 3444455555543 345567899999998777766532 3456789999998
Q ss_pred HHhcCCcc
Q 014420 416 LAERGWKL 423 (425)
Q Consensus 416 l~~~~~~~ 423 (425)
+..+-|+.
T Consensus 90 ~~~~~Wrm 97 (152)
T PF09664_consen 90 YGARPWRM 97 (152)
T ss_pred hCCccccC
Confidence 88888864
No 247
>PRK12828 short chain dehydrogenase; Provisional
Probab=26.45 E-value=4.8e+02 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 014420 404 DTAEAASRVHEALA 417 (425)
Q Consensus 404 et~r~A~~I~~~l~ 417 (425)
..+.+|+.+...+.
T Consensus 206 ~~~dva~~~~~~l~ 219 (239)
T PRK12828 206 TPEQIAAVIAFLLS 219 (239)
T ss_pred CHHHHHHHHHHHhC
Confidence 45677777766654
No 248
>PRK06194 hypothetical protein; Provisional
Probab=26.37 E-value=3.7e+02 Score=25.67 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEe--cCCCCChHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIW--DGEEPNPHLGH 332 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iw--d~~g~NPy~~~ 332 (425)
..++++.||+++ ++...+++| ++++..+.++ +| .++...+...+.......+.+. |-...+-...+
T Consensus 6 ~k~vlVtGasgg---IG~~la~~l-------~~~G~~V~~~-~r-~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAASG---FGLAFARIG-------AALGMKLVLA-DV-QQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCccH---HHHHHHHHH-------HHCCCEEEEE-eC-ChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 356788888776 454433332 3334454443 44 4444333332211112234333 33233334444
Q ss_pred HHH-------cCeEEEcCCC
Q 014420 333 LAW-------ADAFVVTADS 345 (425)
Q Consensus 333 La~-------AD~ivVTaDS 345 (425)
+.. -|.+|..+..
T Consensus 74 ~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 74 ADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 443 4888887764
No 249
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=26.26 E-value=4.7e+02 Score=26.08 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=67.3
Q ss_pred EEEcC-CCCCcccCHHHHHHHHHHHHHHH---HhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcE-EEe-cCCCCChHHHH
Q 014420 259 VNVGG-PTGCCRYGSDLAKQLTAHLLNVL---VSCGSIRISFSMRTPEKVSKIIIKELGNNPKV-HIW-DGEEPNPHLGH 332 (425)
Q Consensus 259 vLIGG-~s~~~~~~~~~a~~L~~~l~~l~---~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v-~iw-d~~g~NPy~~~ 332 (425)
.+.|= .++-|-+|-+.....+....+++ ...+.+++..+|+.-........+..... .+ --| +|.=.|++...
T Consensus 37 YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~-~i~~Rw~pGtlTN~~~~~ 115 (249)
T PTZ00254 37 YVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGAS-AIAGRFTPGTFTNQIQKK 115 (249)
T ss_pred cEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCe-EECCcccCCCCCCccccc
Confidence 36664 57778887654322222222222 34578888888887777666666655432 11 114 45668887766
Q ss_pred HHHcCeEEEcCC--ChHHHHHHHHcCCcEEEEcC
Q 014420 333 LAWADAFVVTAD--SISLISEACSTGKPVYVVGA 364 (425)
Q Consensus 333 La~AD~ivVTaD--SvSMlsEA~atGkPV~v~~l 364 (425)
+..=|++|||-= ...-|.||...|.||+-+.-
T Consensus 116 f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~D 149 (249)
T PTZ00254 116 FMEPRLLIVTDPRTDHQAIREASYVNIPVIALCD 149 (249)
T ss_pred cCCCCEEEEeCCCcchHHHHHHHHhCCCEEEEec
Confidence 677888888742 25779999999999988764
No 250
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.16 E-value=4e+02 Score=25.29 Aligned_cols=34 Identities=9% Similarity=-0.033 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEE
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRIS 295 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT 295 (425)
+.+++++.||+++ -.++.+.+++| ++++..+.++
T Consensus 9 ~~k~~lItGas~g-~GIG~a~a~~l-------a~~G~~v~l~ 42 (258)
T PRK07533 9 AGKRGLVVGIANE-QSIAWGCARAF-------RALGAELAVT 42 (258)
T ss_pred CCCEEEEECCCCC-CcHHHHHHHHH-------HHcCCEEEEE
Confidence 3467788888752 01444443333 2345566554
No 251
>PRK06128 oxidoreductase; Provisional
Probab=26.08 E-value=3.9e+02 Score=26.01 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCC
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRT 300 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRT 300 (425)
.+++++.||+++ ++...++.| +..+..+.++..++.
T Consensus 55 ~k~vlITGas~g---IG~~~a~~l-------~~~G~~V~i~~~~~~ 90 (300)
T PRK06128 55 GRKALITGADSG---IGRATAIAF-------AREGADIALNYLPEE 90 (300)
T ss_pred CCEEEEecCCCc---HHHHHHHHH-------HHcCCEEEEEeCCcc
Confidence 457889998776 555443333 334556666544333
No 252
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.04 E-value=5.3e+02 Score=24.04 Aligned_cols=15 Identities=7% Similarity=0.357 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHCCC
Q 014420 369 WKFTDFHKSLRERGV 383 (425)
Q Consensus 369 ~k~~rf~~~L~~~G~ 383 (425)
.|.+-|.+.+.++|.
T Consensus 133 ~R~~Gf~~~~~~~~~ 147 (269)
T cd06281 133 ERLEGYKAAFAAAGL 147 (269)
T ss_pred HHHHHHHHHHHHcCC
Confidence 466778888888875
No 253
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=25.97 E-value=5.9e+02 Score=28.51 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred CCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhC-------C---CCcE--E
Q 014420 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELG-------N---NPKV--H 319 (425)
Q Consensus 252 lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~-------~---~~~v--~ 319 (425)
+.+.++++++||..+ ++...+++ +++.+..+.+. -|.++....... .+. . ..++ +
T Consensus 77 ~~~gKvVLVTGATGg---IG~aLAr~-------LLk~G~~Vval--~Rn~ekl~~l~~-~l~~~~L~~~Ga~~~~~v~iV 143 (576)
T PLN03209 77 TKDEDLAFVAGATGK---VGSRTVRE-------LLKLGFRVRAG--VRSAQRAESLVQ-SVKQMKLDVEGTQPVEKLEIV 143 (576)
T ss_pred cCCCCEEEEECCCCH---HHHHHHHH-------HHHCCCeEEEE--eCCHHHHHHHHH-HhhhhccccccccccCceEEE
Confidence 446778999999765 44443322 23445555544 345555433322 111 0 0123 3
Q ss_pred EecCCCCChHHHHHHHcCeEEEcCCC
Q 014420 320 IWDGEEPNPHLGHLAWADAFVVTADS 345 (425)
Q Consensus 320 iwd~~g~NPy~~~La~AD~ivVTaDS 345 (425)
..|-...+-+...++.+|.||..+..
T Consensus 144 ~gDLtD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 144 ECDLEKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred EecCCCHHHHHHHhcCCCEEEEcccc
Confidence 34554445567788889999988753
No 254
>PRK08628 short chain dehydrogenase; Provisional
Probab=25.95 E-value=3.4e+02 Score=25.40 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=10.2
Q ss_pred cEEEEEcCCCCCcccCHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLA 275 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a 275 (425)
.+++++||+++ ++...+
T Consensus 8 ~~ilItGasgg---iG~~la 24 (258)
T PRK08628 8 KVVIVTGGASG---IGAAIS 24 (258)
T ss_pred CEEEEeCCCCh---HHHHHH
Confidence 46777777655 444443
No 255
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=25.82 E-value=86 Score=28.29 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=31.9
Q ss_pred hHHHHHHHcCeEEEcC-----CChHHHHHHHHcCCcEEEEcCC
Q 014420 328 PHLGHLAWADAFVVTA-----DSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 328 Py~~~La~AD~ivVTa-----DSvSMlsEA~atGkPV~v~~l~ 365 (425)
-....|.+||.+++|+ +|...|-+.|-.+++++++.+.
T Consensus 55 ~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPS 97 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCC
T ss_pred HHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecC
Confidence 4678999999999998 7788899999989999998764
No 256
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=25.68 E-value=1.3e+02 Score=28.84 Aligned_cols=100 Identities=13% Similarity=0.267 Sum_probs=54.4
Q ss_pred ecCCCCCCCCccEEEeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCC
Q 014420 174 IQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLP 253 (425)
Q Consensus 174 i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp 253 (425)
+.+|+.+..+|-.+++.. |+..+|++..|+. |.+........| ...|
T Consensus 47 ~~~p~yD~eRfGi~~~as--------------------------PR~ADvllVtG~V---t~km~~~l~~~y----~qmP 93 (189)
T PRK14813 47 TNASNYDLERFGIFPRSS--------------------------PRQSDLMIVAGTV---TMKMAERVVRLY----EQMP 93 (189)
T ss_pred hcccCCCHHHcCCeecCC--------------------------cccceEEEEeccC---chhhHHHHHHHH----HhCC
Confidence 346777777777655432 2446788887984 443333333333 3478
Q ss_pred CCcEEEEEcC--CCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHH
Q 014420 254 KPLVVVNVGG--PTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIK 310 (425)
Q Consensus 254 ~p~vavLIGG--~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~ 310 (425)
+|+++|.+|- .++..-|+.-. .....+.+++ --.++|--..=+|+.+.+.|.+
T Consensus 94 ePK~VIA~GaCA~sGG~~~~~sY--~~~~gvd~vI--pVDv~IPGCPP~PeaIl~gl~~ 148 (189)
T PRK14813 94 EPRYVLSMGSCSNCGGPYWEHGY--HVLKGVDRII--PVDVYVPGCPPRPEALIGGLMK 148 (189)
T ss_pred CCCEEEEecccccCCCCcccCCc--ccccCCCCcc--CCcEEccCCCCCHHHHHHHHHH
Confidence 9999999986 33333222111 0112222222 1256666677777777665543
No 257
>PRK14982 acyl-ACP reductase; Provisional
Probab=25.63 E-value=3.5e+02 Score=28.10 Aligned_cols=116 Identities=19% Similarity=0.173 Sum_probs=60.2
Q ss_pred EecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhc--CeEEEEeCCCCcH
Q 014420 225 LTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSC--GSIRISFSMRTPE 302 (425)
Q Consensus 225 ~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~--gsl~iT~SRRTP~ 302 (425)
+|.|+- .|...+-++-+.....++..-+...++++|+... ++...+ .+| .... ..+.+. + |+.+
T Consensus 127 ~TtGNs--~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~---IGs~la----r~L---~~~~gv~~lilv-~-R~~~ 192 (340)
T PRK14982 127 FTTGNT--HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGD---IGSAVC----RWL---DAKTGVAELLLV-A-RQQE 192 (340)
T ss_pred ccCCch--hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChH---HHHHHH----HHH---HhhCCCCEEEEE-c-CCHH
Confidence 355773 3433333333344455664445567888886432 333332 222 2222 344444 3 5655
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHH-HHHHHcCCcEEEEcC
Q 014420 303 KVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLI-SEACSTGKPVYVVGA 364 (425)
Q Consensus 303 ~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMl-sEA~atGkPV~v~~l 364 (425)
.+.. +..++... . .......++.+|.|+..+++..-+ -++-...+|.+++..
T Consensus 193 rl~~-La~el~~~-~--------i~~l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~~~~viDi 245 (340)
T PRK14982 193 RLQE-LQAELGGG-K--------ILSLEEALPEADIVVWVASMPKGVEIDPETLKKPCLMIDG 245 (340)
T ss_pred HHHH-HHHHhccc-c--------HHhHHHHHccCCEEEECCcCCcCCcCCHHHhCCCeEEEEe
Confidence 5433 44444211 1 123568899999988887764442 333344788888754
No 258
>PRK12939 short chain dehydrogenase; Provisional
Probab=25.59 E-value=4.4e+02 Score=24.23 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhC-CCCcEEE--ecCCCCChHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELG-NNPKVHI--WDGEEPNPHLG 331 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~-~~~~v~i--wd~~g~NPy~~ 331 (425)
...++++||+++ ++...++.| ++++..+.++ + |++++..+... .+. ...++.+ .|-...+-...
T Consensus 7 ~~~vlItGa~g~---iG~~la~~l-------~~~G~~v~~~-~-r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 7 GKRALVTGAARG---LGAAFAEAL-------AEAGATVAFN-D-GLAAEARELAA-ALEAAGGRAHAIAADLADPASVQR 73 (250)
T ss_pred CCEEEEeCCCCh---HHHHHHHHH-------HHcCCEEEEE-e-CCHHHHHHHHH-HHHhcCCcEEEEEccCCCHHHHHH
Confidence 456788888765 444433332 3344455554 3 44554433332 221 1123333 35443333444
Q ss_pred HHH-------HcCeEEEcCC
Q 014420 332 HLA-------WADAFVVTAD 344 (425)
Q Consensus 332 ~La-------~AD~ivVTaD 344 (425)
++. ..|.+|..+.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 443 3688887765
No 259
>PLN00414 glycosyltransferase family protein
Probab=25.50 E-value=73 Score=34.01 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=41.5
Q ss_pred ChHHHHHHHc--CeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHH-HCCCeeec
Q 014420 327 NPHLGHLAWA--DAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLR-ERGVVRPF 387 (425)
Q Consensus 327 NPy~~~La~A--D~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~-~~G~~r~f 387 (425)
=|....|+.. +.+|.=++ -|.+.||++.|+|+..+|+-....- -.+.+. +.|+...+
T Consensus 320 ~PQ~~vL~h~~v~~fvtH~G-~nS~~Ea~~~GvP~l~~P~~~dQ~~---na~~~~~~~g~g~~~ 379 (446)
T PLN00414 320 VEQPLILSHPSVGCFVNHCG-FGSMWESLVSDCQIVFIPQLADQVL---ITRLLTEELEVSVKV 379 (446)
T ss_pred CCHHHHhcCCccceEEecCc-hhHHHHHHHcCCCEEecCcccchHH---HHHHHHHHhCeEEEe
Confidence 3778899888 66888888 8889999999999999987533222 234453 45776555
No 260
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=25.33 E-value=2.7e+02 Score=23.50 Aligned_cols=80 Identities=25% Similarity=0.162 Sum_probs=53.1
Q ss_pred eEEEcCCChHHHHHHHH-cCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 014420 338 AFVVTADSISLISEACS-TGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFTGSEDMSDSWSYPPLNDTAEAASRVHEAL 416 (425)
Q Consensus 338 ~ivVTaDSvSMlsEA~a-tGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~g~~~~~~~~~~~PL~et~r~A~~I~~~l 416 (425)
.||+|-.|.+|+-+.|. .|..++-.+ -.|.-..+.+.+.+++--++++.-..- ..+.+-+|.--++..+.+.+
T Consensus 22 ~vv~~v~sS~~~~~~~~~~g~~~~~t~-----vG~~~i~~~~~~~~~~~ggE~sgg~~~-~~~~~~~Dgi~a~~~~l~~l 95 (113)
T PF02880_consen 22 TVVVTVVSSRALDKIAEKHGGKVIRTK-----VGFKNIAEKMREENAVFGGEESGGFIF-PDFSYDKDGIYAALLLLELL 95 (113)
T ss_dssp EEEEETTS-THHHHHHHHTTSEEEEES-----SSHHHHHHHHHHTTESEEEETTSEEEE-TTTESSE-HHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHCCCEEEEec-----CCcHHHHHHHhhhceeEEecccCeEEe-cCCCCCCcHHHHHHHHHHHH
Confidence 68999998888888764 477776544 346666788888886544443321111 12345689999999999999
Q ss_pred HhcCCcc
Q 014420 417 AERGWKL 423 (425)
Q Consensus 417 ~~~~~~~ 423 (425)
+.+|.++
T Consensus 96 ~~~~~~l 102 (113)
T PF02880_consen 96 AEEGKTL 102 (113)
T ss_dssp HHHTS-H
T ss_pred HHhCCCH
Confidence 9999775
No 261
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=25.06 E-value=3.8e+02 Score=24.88 Aligned_cols=70 Identities=20% Similarity=0.096 Sum_probs=41.4
Q ss_pred CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCC-
Q 014420 290 GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCT- 368 (425)
Q Consensus 290 gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~- 368 (425)
..+.|..=.|||+++.+.+++.-+....++|--.-..+-..+.+ |..|-+||+=+|.+...
T Consensus 28 ~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvv------------------a~~t~~PVIgvP~~~~~l 89 (156)
T TIGR01162 28 YELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMV------------------AALTPLPVIGVPVPSKAL 89 (156)
T ss_pred eEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHH------------------HhccCCCEEEecCCccCC
Confidence 48999999999999999997754333455554332333334443 23456676666665432
Q ss_pred hhHHHHHHH
Q 014420 369 WKFTDFHKS 377 (425)
Q Consensus 369 ~k~~rf~~~ 377 (425)
+.+..++..
T Consensus 90 ~G~daLlS~ 98 (156)
T TIGR01162 90 SGLDSLLSI 98 (156)
T ss_pred CCHHHHHHH
Confidence 334444333
No 262
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.98 E-value=32 Score=28.42 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=21.4
Q ss_pred HHHcCeEEEcCCChHHHH-HHHHcCCcEE
Q 014420 333 LAWADAFVVTADSISLIS-EACSTGKPVY 360 (425)
Q Consensus 333 La~AD~ivVTaDSvSMls-EA~atGkPV~ 360 (425)
+..+|++|+|+.+.+|.. +=..+..||+
T Consensus 33 ~~~~daiVvtG~~~n~mg~~d~~~~~pVI 61 (80)
T PF03698_consen 33 LQNVDAIVVTGQDTNMMGIQDTSTKVPVI 61 (80)
T ss_pred cCCcCEEEEECCCcccccccccccCceEE
Confidence 456899999999999984 3356677774
No 263
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.90 E-value=2.2e+02 Score=27.10 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=36.9
Q ss_pred CcEEEecCCCCCh--H---HHHHHHcCeEEEcCCC------hHHHHHHHHcCCcEEEEcCCCC
Q 014420 316 PKVHIWDGEEPNP--H---LGHLAWADAFVVTADS------ISLISEACSTGKPVYVVGAERC 367 (425)
Q Consensus 316 ~~v~iwd~~g~NP--y---~~~La~AD~ivVTaDS------vSMlsEA~atGkPV~v~~l~~~ 367 (425)
|.+++| ++..+. + ...+..||.++|-+=| .+++.+|-..|+||+++-++..
T Consensus 132 P~VV~F-gE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~ 193 (206)
T cd01410 132 DTIVDF-GERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPT 193 (206)
T ss_pred CcEEEC-CCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCC
Confidence 677555 433333 2 4667789999998877 4577788899999999987643
No 264
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=24.75 E-value=4.2e+02 Score=27.54 Aligned_cols=35 Identities=37% Similarity=0.507 Sum_probs=28.5
Q ss_pred EEEcCCCcchhhHH-HHHHHHhCCCCccceeEeeccCCCc
Q 014420 32 VVIGNGYPGSENQC-VGLVRALGLSDKHVLYRVTRPRGGI 70 (425)
Q Consensus 32 ~visdG~aG~~~Q~-~GLa~aLgl~~~~~~~~~~~~~~~~ 70 (425)
|||-||.-.+..|| +=||+|+|...- .++|-|..+
T Consensus 163 ~vIQNganS~VG~~ViQlaka~Gikti----nvVRdR~~i 198 (354)
T KOG0025|consen 163 SVIQNGANSGVGQAVIQLAKALGIKTI----NVVRDRPNI 198 (354)
T ss_pred eeeecCcccHHHHHHHHHHHHhCcceE----EEeecCccH
Confidence 89999999999998 479999999764 357766664
No 265
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=24.53 E-value=5.7e+02 Score=24.17 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHHcCeEEEc-CCC---hHHHHHHHHc
Q 014420 280 AHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAWADAFVVT-ADS---ISLISEACST 355 (425)
Q Consensus 280 ~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~AD~ivVT-aDS---vSMlsEA~at 355 (425)
..+..++..+..+.|.. ....++..+ +.+ . .++.+-.+ ... .+.|..+|.||+. .|+ .....+|-..
T Consensus 23 rk~~~Ll~~ga~VtVvs-p~~~~~l~~-l~~---~-~~i~~~~~-~~~--~~dl~~~~lVi~at~d~~ln~~i~~~a~~~ 93 (205)
T TIGR01470 23 RKARLLLKAGAQLRVIA-EELESELTL-LAE---Q-GGITWLAR-CFD--ADILEGAFLVIAATDDEELNRRVAHAARAR 93 (205)
T ss_pred HHHHHHHHCCCEEEEEc-CCCCHHHHH-HHH---c-CCEEEEeC-CCC--HHHhCCcEEEEECCCCHHHHHHHHHHHHHc
Confidence 34455566666776653 333333332 322 1 24532222 111 4668889987665 453 2455556678
Q ss_pred CCcEEEEcC
Q 014420 356 GKPVYVVGA 364 (425)
Q Consensus 356 GkPV~v~~l 364 (425)
|+||.+..-
T Consensus 94 ~ilvn~~d~ 102 (205)
T TIGR01470 94 GVPVNVVDD 102 (205)
T ss_pred CCEEEECCC
Confidence 999976643
No 266
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=24.48 E-value=69 Score=27.96 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=38.9
Q ss_pred CChH-HHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHH
Q 014420 326 PNPH-LGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKSLR 379 (425)
Q Consensus 326 ~NPy-~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~ 379 (425)
.|++ ..-++.||.|++-+|. ....+.-..||||+..++...-.+-..+++..+
T Consensus 47 ~~~lt~~~i~~Ad~VIia~d~-~~~~~~rF~gk~v~~~s~~~ai~d~~~vl~~a~ 100 (114)
T PRK10427 47 ENRLTDEDIRRADVVLLITDI-ELAGAERFEHCRYVQCSIYAFLREPQRVMSAVR 100 (114)
T ss_pred CCCCCHHHHHhCCEEEEEecC-CCCchhhhCCCeEEEecHHHHHHHHHHHHHHHH
Confidence 5666 5789999999999994 334578889999999988766555555544443
No 267
>cd07080 ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC. Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN.
Probab=24.22 E-value=2.8e+02 Score=29.23 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=42.6
Q ss_pred hcCeEEEEeCCCCcHHHH---HHHHHhhCCC---C--cEEEecCCCCChHHHHHHHcCeEEEcCCCh--HHHHHHHHcC
Q 014420 288 SCGSIRISFSMRTPEKVS---KIIIKELGNN---P--KVHIWDGEEPNPHLGHLAWADAFVVTADSI--SLISEACSTG 356 (425)
Q Consensus 288 ~~gsl~iT~SRRTP~~~~---~~L~~~l~~~---~--~v~iwd~~g~NPy~~~La~AD~ivVTaDSv--SMlsEA~atG 356 (425)
.+....+-.|.+||.... +.|.+.+..+ . .+..|++.+..-...+++.+|.+++|+.+. ..+.++++-+
T Consensus 138 aGN~~ilKpS~~~p~~~~~l~~~l~~~~p~~~~~~~~~vv~~~g~~~~~~~~l~~~~D~i~~~Gs~~~~~~i~~~a~~~ 216 (422)
T cd07080 138 VKNVNLLKMSSSDPLTATALLRSLADVDPNHPLTDSISVVYWPGGDAELEERILASADAVVAWGGEEAVKAIRSLLPPG 216 (422)
T ss_pred hcCceEEECCCccchHHHHHHHHHHhcCCCCcccceEEEEEecCCchHHHHHHHHhCCEEEEeCCHHHHHHHHHhCCCC
Confidence 455789999999987643 4444432210 1 245577644434566788889999999743 3355555544
No 268
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.93 E-value=5.7e+02 Score=23.49 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=24.6
Q ss_pred EEcCCChHHHHHHHH----cC-CcEEEEcCCCC-----ChhHHHHHHHHHHCCC
Q 014420 340 VVTADSISLISEACS----TG-KPVYVVGAERC-----TWKFTDFHKSLRERGV 383 (425)
Q Consensus 340 vVTaDSvSMlsEA~a----tG-kPV~v~~l~~~-----~~k~~rf~~~L~~~G~ 383 (425)
.|..|.-.+..+++- .| +-+.++..+.. ..|.+-|.+.+.+.|.
T Consensus 93 ~v~~d~~~~~~~~~~~l~~~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~ 146 (259)
T cd01542 93 SVVYDDYGAGYELGEYLAQQGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGI 146 (259)
T ss_pred EEEECcHHHHHHHHHHHHHcCCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCC
Confidence 355555555444432 24 45666643211 2456778888988887
No 269
>PRK06181 short chain dehydrogenase; Provisional
Probab=23.92 E-value=4.5e+02 Score=24.62 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHHHHh
Q 014420 402 LNDTAEAASRVHEALAE 418 (425)
Q Consensus 402 L~et~r~A~~I~~~l~~ 418 (425)
+-+.+.+|+.|...+..
T Consensus 209 ~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 209 IMSAEECAEAILPAIAR 225 (263)
T ss_pred CCCHHHHHHHHHHHhhC
Confidence 34567777777776654
No 270
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=23.86 E-value=2e+02 Score=21.70 Aligned_cols=37 Identities=32% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHH
Q 014420 331 GHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFT 372 (425)
Q Consensus 331 ~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~ 372 (425)
..+...|.++.|.+.. ....++|++.+.+-......+
T Consensus 42 ~~~~~~dliitt~~~~-----~~~~~~p~~~i~~~~~~~d~~ 78 (84)
T cd00133 42 IDLADADLIISTVPLA-----ARFLGKPVIVVSPLLNEKDGE 78 (84)
T ss_pred hhcCCccEEEECCccc-----cccCCCcEEEEcccccccCHH
Confidence 4567889999999833 345588998876544333333
No 271
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.61 E-value=5.8e+02 Score=23.48 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHh
Q 014420 402 LNDTAEAASRVHEALAE 418 (425)
Q Consensus 402 L~et~r~A~~I~~~l~~ 418 (425)
+-+.+.+|+.+...+..
T Consensus 207 ~~~~~~va~~~~~l~~~ 223 (241)
T PRK07454 207 MLSPEQVAQTILHLAQL 223 (241)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 34567777777777653
No 272
>PRK12746 short chain dehydrogenase; Provisional
Probab=23.38 E-value=5.5e+02 Score=23.82 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCC
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMR 299 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRR 299 (425)
..++++.||+++ ++...++.| ++++..+.++..|+
T Consensus 6 ~~~ilItGasg~---iG~~la~~l-------~~~G~~v~i~~~r~ 40 (254)
T PRK12746 6 GKVALVTGASRG---IGRAIAMRL-------ANDGALVAIHYGRN 40 (254)
T ss_pred CCEEEEeCCCch---HHHHHHHHH-------HHCCCEEEEEcCCC
Confidence 356788888765 454433333 33455665555443
No 273
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=23.25 E-value=5.3e+02 Score=25.23 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHcCeEEEcCCChHH-------------HHHHHHcCCcEEE
Q 014420 330 LGHLAWADAFVVTADSISL-------------ISEACSTGKPVYV 361 (425)
Q Consensus 330 ~~~La~AD~ivVTaDSvSM-------------lsEA~atGkPV~v 361 (425)
.+.|..||.|++++++... |-|++..|+|+.=
T Consensus 74 ~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G 118 (233)
T PRK05282 74 VAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIG 118 (233)
T ss_pred HHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEE
Confidence 4677778888888775443 4467777766543
No 274
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=22.91 E-value=5.3e+02 Score=24.14 Aligned_cols=35 Identities=11% Similarity=-0.113 Sum_probs=21.0
Q ss_pred HHHHcCCcEEEEcCCCCChhHHHHH-----HHHHHCCCeee
Q 014420 351 EACSTGKPVYVVGAERCTWKFTDFH-----KSLRERGVVRP 386 (425)
Q Consensus 351 EA~atGkPV~v~~l~~~~~k~~rf~-----~~L~~~G~~r~ 386 (425)
+....||||.++... ....+.+.. ..|...|+...
T Consensus 94 ~~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 94 ERALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred hhhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 356889999998765 333333332 35556666543
No 275
>PRK09932 glycerate kinase II; Provisional
Probab=22.62 E-value=2.8e+02 Score=29.31 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=38.3
Q ss_pred hHHHHHHHcCeEEEcCCC-----------hHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHHCCCeeecC
Q 014420 328 PHLGHLAWADAFVVTADS-----------ISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRERGVVRPFT 388 (425)
Q Consensus 328 Py~~~La~AD~ivVTaDS-----------vSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~~G~~r~f~ 388 (425)
-+...++.||.||.-+++ ..+..-|-..++||+++.-.- ..-.+.|.+.|....|.
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~-----~~~~~~~~~~g~~~~~~ 343 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVL-----GDGVEVVHQYGIDAVFS 343 (381)
T ss_pred ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEeccc-----CCChHHHHhcCceEEEE
Confidence 456889999988777664 234445556789999996432 12245688889887773
No 276
>PRK09135 pteridine reductase; Provisional
Probab=22.58 E-value=6e+02 Score=23.24 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=38.1
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCC--CcEEEe--cCCCCChHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNN--PKVHIW--DGEEPNPHL 330 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~--~~v~iw--d~~g~NPy~ 330 (425)
..+++++||+++ ++...+++| ++.+..+ +..+||+.+.... +.+.+... ..+.+. |-...+...
T Consensus 6 ~~~vlItGa~g~---iG~~l~~~l-------~~~g~~v-~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 73 (249)
T PRK09135 6 AKVALITGGARR---IGAAIARTL-------HAAGYRV-AIHYHRSAAEADA-LAAELNALRPGSAAALQADLLDPDALP 73 (249)
T ss_pred CCEEEEeCCCch---HHHHHHHHH-------HHCCCEE-EEEcCCCHHHHHH-HHHHHHhhcCCceEEEEcCCCCHHHHH
Confidence 357888998764 444333222 2344455 4446666543322 22222210 123222 444444455
Q ss_pred HHHHH-------cCeEEEcCC
Q 014420 331 GHLAW-------ADAFVVTAD 344 (425)
Q Consensus 331 ~~La~-------AD~ivVTaD 344 (425)
.++.. .|.+|-.+.
T Consensus 74 ~~~~~~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 74 ELVAACVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 55554 588887775
No 277
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.47 E-value=6.2e+02 Score=23.38 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHCCC
Q 014420 369 WKFTDFHKSLRERGV 383 (425)
Q Consensus 369 ~k~~rf~~~L~~~G~ 383 (425)
.|..-|.+.|.++|.
T Consensus 134 ~r~~gf~~~l~~~~~ 148 (268)
T cd06273 134 ARRAGVRAALAEAGL 148 (268)
T ss_pred HHHHHHHHHHHHcCC
Confidence 467778999999874
No 278
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=22.44 E-value=3.2e+02 Score=24.27 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=45.3
Q ss_pred CCCcEEEEEcCCCCCcccCHHH-----HHHHHHHHHHHHHhcCeEEEEeCCC----CcHHHHHHH---HHhhCC---CCc
Q 014420 253 PKPLVVVNVGGPTGCCRYGSDL-----AKQLTAHLLNVLVSCGSIRISFSMR----TPEKVSKII---IKELGN---NPK 317 (425)
Q Consensus 253 p~p~vavLIGG~s~~~~~~~~~-----a~~L~~~l~~l~~~~gsl~iT~SRR----TP~~~~~~L---~~~l~~---~~~ 317 (425)
.....++-+-|-+..++...+. ...|...|..+...+..++|.+=.- |-..+..++ .+.|.. ...
T Consensus 27 s~G~~aIalpGV~~~~~~~~~~~~~~~~~~L~p~L~~~~~~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~ 106 (130)
T PF12965_consen 27 SQGYPAIALPGVNNGYRWPKDEGDKIGKRRLIPELAKLAKPGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVK 106 (130)
T ss_pred cCCceEEEeCceeccccccccccccccchhcchhHHHhccCCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEE
Confidence 4567778888877777664432 1345566666655566888877544 445554444 333332 234
Q ss_pred EEEecCCCCChHHHHHH
Q 014420 318 VHIWDGEEPNPHLGHLA 334 (425)
Q Consensus 318 v~iwd~~g~NPy~~~La 334 (425)
+..|+..+.+=..++|+
T Consensus 107 ~~~w~~~~~KGiDD~l~ 123 (130)
T PF12965_consen 107 IITWPPGEGKGIDDLLA 123 (130)
T ss_pred EEEeCCCCCCCHhHHHH
Confidence 56677433333444444
No 279
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.11 E-value=7.3e+02 Score=24.08 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCC-CcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHH
Q 014420 255 PLVVVNVGGPTG-CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIK 310 (425)
Q Consensus 255 p~vavLIGG~s~-~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~ 310 (425)
+.-.+++.|+++ .+.++.++-.++++.+.+.+.....+.+.++.=+-++..+..+.
T Consensus 31 Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~ 87 (281)
T cd00408 31 GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARH 87 (281)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHH
Confidence 444566777665 45577777666665554433222355666665444555554443
No 280
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=22.09 E-value=6.3e+02 Score=23.29 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHCCC
Q 014420 369 WKFTDFHKSLRERGV 383 (425)
Q Consensus 369 ~k~~rf~~~L~~~G~ 383 (425)
.|.+-|.+.+.+.|.
T Consensus 134 ~r~~gf~~~~~~~~~ 148 (268)
T cd06298 134 ERLAGYKEALSEANI 148 (268)
T ss_pred HHHHHHHHHHHHcCC
Confidence 467778899988874
No 281
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=21.70 E-value=2.5e+02 Score=24.21 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=36.0
Q ss_pred EEEecCCCC-cCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccC-----HHHHHHHHHHHH
Q 014420 223 VVLTTGALH-QIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYG-----SDLAKQLTAHLL 283 (425)
Q Consensus 223 Vl~T~Galh-~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~-----~~~a~~L~~~l~ 283 (425)
.+-+ |..| ..+++.+-.--+.|.++++. .++-+|+++=.+.++ .+++..|+...-
T Consensus 17 ~~~~-gg~N~~~~~~~~~a~lr~W~er~ga-----~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y 77 (111)
T PF14062_consen 17 YLGW-GGWNYCPDTADIIAVLRYWEERYGA-----EIVGIGFDTLELSVARPPQTPEEAEALAAEHY 77 (111)
T ss_pred HccC-CCCCCCCCHHHHHHHHHHHHHHhCE-----EEEEEECCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445 6665 56677776677789999874 567777776555543 466666765544
No 282
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.59 E-value=5.1e+02 Score=24.43 Aligned_cols=10 Identities=20% Similarity=0.139 Sum_probs=7.1
Q ss_pred CcEEEEEcCC
Q 014420 255 PLVVVNVGGP 264 (425)
Q Consensus 255 p~vavLIGG~ 264 (425)
.+++++.||+
T Consensus 7 ~k~~lItGas 16 (252)
T PRK06079 7 GKKIVVMGVA 16 (252)
T ss_pred CCEEEEeCCC
Confidence 4577778876
No 283
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=21.53 E-value=6e+02 Score=26.20 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=45.3
Q ss_pred cCeEEEEeCCCCcHH--HHHHHHHhhCCC-CcEEEecCCCCCh-HH---HHH-----HHcCeEE-EcCCChHHHHHHHHc
Q 014420 289 CGSIRISFSMRTPEK--VSKIIIKELGNN-PKVHIWDGEEPNP-HL---GHL-----AWADAFV-VTADSISLISEACST 355 (425)
Q Consensus 289 ~gsl~iT~SRRTP~~--~~~~L~~~l~~~-~~v~iwd~~g~NP-y~---~~L-----a~AD~iv-VTaDSvSMlsEA~at 355 (425)
+.+.+|.+++++-+. ..+.+.+.|... -.+.+|++-..|| +. ..+ ..+|.|| +=++|+.-++-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~ 107 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAA 107 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh
Confidence 457777777655432 234444444321 2355677655665 21 122 2479999 455577777777655
Q ss_pred --------------------CCcEEEEcCC
Q 014420 356 --------------------GKPVYVVGAE 365 (425)
Q Consensus 356 --------------------GkPV~v~~l~ 365 (425)
+.|++.+|-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 108 GAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 5799999863
No 284
>PF08616 SPA: Stabilization of polarity axis
Probab=21.52 E-value=1.5e+02 Score=25.72 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=27.8
Q ss_pred hHHHHHHHHcCCcEEEEcCCCCChhHHHHHHHHHH
Q 014420 346 ISLISEACSTGKPVYVVGAERCTWKFTDFHKSLRE 380 (425)
Q Consensus 346 vSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~L~~ 380 (425)
..++.||..+++|+.|+......+....|..+|..
T Consensus 15 i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~ 49 (113)
T PF08616_consen 15 IILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCS 49 (113)
T ss_pred HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999887776666666555544
No 285
>PRK07775 short chain dehydrogenase; Provisional
Probab=21.50 E-value=3.8e+02 Score=25.64 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=9.2
Q ss_pred CCCcEEEEEcCCCC
Q 014420 253 PKPLVVVNVGGPTG 266 (425)
Q Consensus 253 p~p~vavLIGG~s~ 266 (425)
+..++++++||+++
T Consensus 8 ~~~~~vlVtGa~g~ 21 (274)
T PRK07775 8 PDRRPALVAGASSG 21 (274)
T ss_pred CCCCEEEEECCCch
Confidence 34457788887654
No 286
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.35 E-value=5.9e+02 Score=23.33 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=8.8
Q ss_pred CcEEEEEcCCCC
Q 014420 255 PLVVVNVGGPTG 266 (425)
Q Consensus 255 p~vavLIGG~s~ 266 (425)
..+++++||+++
T Consensus 5 ~~~~lItG~~g~ 16 (253)
T PRK08217 5 DKVIVITGGAQG 16 (253)
T ss_pred CCEEEEECCCch
Confidence 456788888766
No 287
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=3.4e+02 Score=25.21 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCcccCHHH
Q 014420 220 DGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDL 274 (425)
Q Consensus 220 ~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~~~~~~~ 274 (425)
+.-|+...---...+.+.++..-..|.. .. .-+.++|||+.| ++++.
T Consensus 67 ~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~----~G-~~i~f~IGG~~G---l~~~~ 113 (155)
T COG1576 67 GSYVVLLDIRGKALSSEEFADFLERLRD----DG-RDISFLIGGADG---LSEAV 113 (155)
T ss_pred CCeEEEEecCCCcCChHHHHHHHHHHHh----cC-CeEEEEEeCccc---CCHHH
Confidence 3344443323337888888876666643 23 568999999998 66653
No 288
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.29 E-value=6.5e+02 Score=23.14 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=25.0
Q ss_pred EEcCCChHHHHHHHH----cCC-cEEEEcCCCC----ChhHHHHHHHHHHCCC
Q 014420 340 VVTADSISLISEACS----TGK-PVYVVGAERC----TWKFTDFHKSLRERGV 383 (425)
Q Consensus 340 vVTaDSvSMlsEA~a----tGk-PV~v~~l~~~----~~k~~rf~~~L~~~G~ 383 (425)
.|..|......+|+- .|. -|.++..+.. ..|.+-|.+.|.+.|.
T Consensus 96 ~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~ 148 (268)
T cd06289 96 YVGPDNAAGARLATEHLISLGHRRIAFIGGLEDSSTRRERLAGYRAALAEAGL 148 (268)
T ss_pred EEeecchHHHHHHHHHHHHCCCCCEEEecCCccccchHHHHHHHHHHHHHcCC
Confidence 456665555554433 353 3554533221 2477788999988874
No 289
>PRK08339 short chain dehydrogenase; Provisional
Probab=21.20 E-value=4.6e+02 Score=25.01 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCC
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMR 299 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRR 299 (425)
+.+++++.||+++ ++.+.+++| ++.+..+.++ +|+
T Consensus 7 ~~k~~lItGas~g---IG~aia~~l-------~~~G~~V~~~-~r~ 41 (263)
T PRK08339 7 SGKLAFTTASSKG---IGFGVARVL-------ARAGADVILL-SRN 41 (263)
T ss_pred CCCEEEEeCCCCc---HHHHHHHHH-------HHCCCEEEEE-eCC
Confidence 3568889999886 555443333 3345566554 443
No 290
>PRK07985 oxidoreductase; Provisional
Probab=21.20 E-value=6.1e+02 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEe
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISF 296 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~ 296 (425)
..+++++||+++ ++...++.| +..+..+.++.
T Consensus 49 ~k~vlITGas~g---IG~aia~~L-------~~~G~~Vi~~~ 80 (294)
T PRK07985 49 DRKALVTGGDSG---IGRAAAIAY-------AREGADVAISY 80 (294)
T ss_pred CCEEEEECCCCc---HHHHHHHHH-------HHCCCEEEEec
Confidence 357888888765 555443333 23455665543
No 291
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=21.06 E-value=3.1e+02 Score=28.99 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHH
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHL 333 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~L 333 (425)
+.+.+++.||+++ ++.+.+++| ++++.++.+. +||. ++..+.+.+ .......+.||-++.+-....+
T Consensus 177 ~gK~VLITGASgG---IG~aLA~~L-------a~~G~~Vi~l-~r~~-~~l~~~~~~-~~~~v~~v~~Dvsd~~~v~~~l 243 (406)
T PRK07424 177 KGKTVAVTGASGT---LGQALLKEL-------HQQGAKVVAL-TSNS-DKITLEING-EDLPVKTLHWQVGQEAALAELL 243 (406)
T ss_pred CCCEEEEeCCCCH---HHHHHHHHH-------HHCCCEEEEE-eCCH-HHHHHHHhh-cCCCeEEEEeeCCCHHHHHHHh
Confidence 3567889999886 555543333 3345566554 4443 333333322 1111224456664444566777
Q ss_pred HHcCeEEEcCC
Q 014420 334 AWADAFVVTAD 344 (425)
Q Consensus 334 a~AD~ivVTaD 344 (425)
...|.+|..+.
T Consensus 244 ~~IDiLInnAG 254 (406)
T PRK07424 244 EKVDILIINHG 254 (406)
T ss_pred CCCCEEEECCC
Confidence 78899887653
No 292
>PRK08226 short chain dehydrogenase; Provisional
Probab=21.02 E-value=6.6e+02 Score=23.48 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=8.9
Q ss_pred CcEEEEEcCCCC
Q 014420 255 PLVVVNVGGPTG 266 (425)
Q Consensus 255 p~vavLIGG~s~ 266 (425)
..+++++||+++
T Consensus 6 ~~~~lItG~s~g 17 (263)
T PRK08226 6 GKTALITGALQG 17 (263)
T ss_pred CCEEEEeCCCCh
Confidence 457788888765
No 293
>PRK12744 short chain dehydrogenase; Provisional
Probab=20.97 E-value=5.7e+02 Score=23.95 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHh
Q 014420 402 LNDTAEAASRVHEALAE 418 (425)
Q Consensus 402 L~et~r~A~~I~~~l~~ 418 (425)
+.+.+++|..+.-.+..
T Consensus 223 ~~~~~dva~~~~~l~~~ 239 (257)
T PRK12744 223 LTDIEDIVPFIRFLVTD 239 (257)
T ss_pred CCCHHHHHHHHHHhhcc
Confidence 45677788877776653
No 294
>PRK09242 tropinone reductase; Provisional
Probab=20.92 E-value=6.1e+02 Score=23.69 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=8.4
Q ss_pred CcEEEEEcCCCC
Q 014420 255 PLVVVNVGGPTG 266 (425)
Q Consensus 255 p~vavLIGG~s~ 266 (425)
.++++++||+++
T Consensus 9 ~k~~lItGa~~g 20 (257)
T PRK09242 9 GQTALITGASKG 20 (257)
T ss_pred CCEEEEeCCCch
Confidence 456788888665
No 295
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.86 E-value=8.6e+02 Score=24.42 Aligned_cols=74 Identities=5% Similarity=-0.018 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCC-cccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHH
Q 014420 232 QIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGC-CRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIK 310 (425)
Q Consensus 232 ~v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~-~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~ 310 (425)
.|+.+.++.--+.. .....-.++++|++|- +.++.++-.++++...+.+.....+++-++--+.+++.+..+.
T Consensus 25 ~iD~~~l~~lv~~l------i~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~ 98 (309)
T cd00952 25 TVDLDETARLVERL------IAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRA 98 (309)
T ss_pred CcCHHHHHHHHHHH------HHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHH
Confidence 36776665433222 2355567888888875 4588888777766554443222357787776555666665544
Q ss_pred h
Q 014420 311 E 311 (425)
Q Consensus 311 ~ 311 (425)
.
T Consensus 99 A 99 (309)
T cd00952 99 L 99 (309)
T ss_pred H
Confidence 3
No 296
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.84 E-value=8.4e+02 Score=24.28 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=41.6
Q ss_pred CChHHHHHHHHhhhhhhCCCCCCcEEEEEcCCCCCc-ccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHh
Q 014420 233 IDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCC-RYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKE 311 (425)
Q Consensus 233 v~~~~L~~a~~~~~~~l~~lp~p~vavLIGG~s~~~-~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~ 311 (425)
++.+.++.--+.. +..+.-.++++|+++-+ .++.++-.++.+.+.+.+...-.+++-++.-+-++..+..+..
T Consensus 18 iD~~~l~~lv~~~------~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A 91 (294)
T TIGR02313 18 IDEEALRELIEFQ------IEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFA 91 (294)
T ss_pred cCHHHHHHHHHHH------HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHH
Confidence 5666665332211 23455678888988755 5888876666655443332223566667665556665555443
No 297
>PRK07890 short chain dehydrogenase; Provisional
Probab=20.80 E-value=5.1e+02 Score=24.04 Aligned_cols=18 Identities=44% Similarity=0.455 Sum_probs=11.5
Q ss_pred CcEEEEEcCCCCCcccCHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLA 275 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a 275 (425)
..+++++||+++ ++...+
T Consensus 5 ~k~vlItGa~~~---IG~~la 22 (258)
T PRK07890 5 GKVVVVSGVGPG---LGRTLA 22 (258)
T ss_pred CCEEEEECCCCc---HHHHHH
Confidence 456788888776 444433
No 298
>PRK08265 short chain dehydrogenase; Provisional
Probab=20.72 E-value=7.2e+02 Score=23.45 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLA 334 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La 334 (425)
..++++.||+++ ++.+.++.| ++++..+.++ +|+ +++..+ +.+.+.....++..|-....-...++.
T Consensus 6 ~k~vlItGas~g---IG~~ia~~l-------~~~G~~V~~~-~r~-~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 6 GKVAIVTGGATL---IGAAVARAL-------VAAGARVAIV-DID-ADNGAA-VAASLGERARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCEEEEECCCCh---HHHHHHHHH-------HHCCCEEEEE-eCC-HHHHHH-HHHHhCCeeEEEEecCCCHHHHHHHHH
Confidence 457889998876 555443333 3344455444 443 333333 333333211222234433333433333
Q ss_pred -------HcCeEEEcCC
Q 014420 335 -------WADAFVVTAD 344 (425)
Q Consensus 335 -------~AD~ivVTaD 344 (425)
.-|.+|..+.
T Consensus 73 ~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 73 TVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 3488877654
No 299
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.71 E-value=1.5e+02 Score=32.20 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=40.1
Q ss_pred eEEEcCC-----ChHHHHHHHHcCCcEEEEcCCCCChhHHH-HHHHHHHCCCeeecCCCCCCCCCCCCCcchHHHHHHHH
Q 014420 338 AFVVTAD-----SISLISEACSTGKPVYVVGAERCTWKFTD-FHKSLRERGVVRPFTGSEDMSDSWSYPPLNDTAEAASR 411 (425)
Q Consensus 338 ~ivVTaD-----SvSMlsEA~atGkPV~v~~l~~~~~k~~r-f~~~L~~~G~~r~f~g~~~~~~~~~~~PL~et~r~A~~ 411 (425)
.+++|.+ +++=|+||...+.||+++.-........+ .++.+-...+.+++ ..|++. +++.+++...
T Consensus 79 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~-------tk~~~~-v~~~~~~~~~ 150 (564)
T PRK08155 79 VCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPI-------TKHNYL-VRDIEELPQV 150 (564)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhcc-------ceEEEE-cCCHHHHHHH
Confidence 4666744 45568999999999999965433221111 11222222333333 135554 3566777777
Q ss_pred HHHHHHh
Q 014420 412 VHEALAE 418 (425)
Q Consensus 412 I~~~l~~ 418 (425)
|.+.+..
T Consensus 151 i~~A~~~ 157 (564)
T PRK08155 151 ISDAFRI 157 (564)
T ss_pred HHHHHHH
Confidence 7776653
No 300
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=20.61 E-value=8.5e+02 Score=24.26 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=48.5
Q ss_pred CeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCCh-H------HHHHH--HcCeEEEcCC-ChHHHHHHHHc----
Q 014420 290 GSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNP-H------LGHLA--WADAFVVTAD-SISLISEACST---- 355 (425)
Q Consensus 290 gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NP-y------~~~La--~AD~ivVTaD-SvSMlsEA~at---- 355 (425)
.+.+|.++..+-+...+.+.+.+...-.+.++++.+.|| + ...+. .+|.||.=++ |+.=++-+++.
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~ 103 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNR 103 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcC
Confidence 368888888877766777777775422455666655555 2 22332 4799995544 55555555433
Q ss_pred CCcEEEEcCCC
Q 014420 356 GKPVYVVGAER 366 (425)
Q Consensus 356 GkPV~v~~l~~ 366 (425)
|.|++.+|-..
T Consensus 104 ~~p~i~iPTt~ 114 (332)
T cd07766 104 GLPIIIVPTTA 114 (332)
T ss_pred CCCEEEEeCCC
Confidence 88999999643
No 301
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=20.52 E-value=60 Score=32.60 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=15.1
Q ss_pred EEeCCCCc--HHHHHHHHHhhCC
Q 014420 294 ISFSMRTP--EKVSKIIIKELGN 314 (425)
Q Consensus 294 iT~SRRTP--~~~~~~L~~~l~~ 314 (425)
||+||||. +--.+++-+++..
T Consensus 2 ISaSRRTDIPAfY~~Wf~nRl~~ 24 (266)
T PF08902_consen 2 ISASRRTDIPAFYSDWFMNRLRE 24 (266)
T ss_pred cccCcCCCcccchHHHHHHHhhC
Confidence 78999994 4456777777763
No 302
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=20.49 E-value=1.9e+02 Score=28.51 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=54.3
Q ss_pred ecCCCCCCCCccEEEeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCCcCChHHHHHHHHhhhhhhCCCC
Q 014420 174 IQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLP 253 (425)
Q Consensus 174 i~~Pr~~~~~FDlVivP~HD~~~l~~~~~~~~~~~~~~~~~~~~~~~~NVl~T~Galh~v~~~~L~~a~~~~~~~l~~lp 253 (425)
+..|+.+..+|-.+++.. |+..+|++..|++..-..+.|.... ...|
T Consensus 51 ~~~p~yDleRfGi~~~aS--------------------------PRhADvliVtG~VT~km~~~L~rly-------eqmP 97 (225)
T CHL00023 51 LIGSRFDFDRYGLVPRSS--------------------------PRQADLILTAGTVTMKMAPSLVRLY-------EQMP 97 (225)
T ss_pred hCCCccCHHHcCCeecCC--------------------------cccceEEEEecCCccccHHHHHHHH-------HhcC
Confidence 346788888877665521 2456788888996655455554432 2368
Q ss_pred CCcEEEEEcC--CCCCcc-cCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHH
Q 014420 254 KPLVVVNVGG--PTGCCR-YGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIK 310 (425)
Q Consensus 254 ~p~vavLIGG--~s~~~~-~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~ 310 (425)
+|+++|.+|- .+|..- .+.-. ....+.+++. -.++|-.-.=+|+.+.+.|.+
T Consensus 98 ePK~VIA~GaCA~sGGif~~dsy~---~v~gvd~vIP--VDv~IPGCPP~PeaIi~~l~~ 152 (225)
T CHL00023 98 EPKYVIAMGACTITGGMFSTDSYS---TVRGVDKLIP--VDVYLPGCPPKPEAVIDAITK 152 (225)
T ss_pred CCCeEEEEccccccCCcccCCCcc---cccCccccce--eeEEecCCCCCHHHHHHHHHH
Confidence 8998888875 333321 12110 0112222221 246666666677776666543
No 303
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.46 E-value=7.5e+02 Score=23.56 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHCC
Q 014420 369 WKFTDFHKSLRERG 382 (425)
Q Consensus 369 ~k~~rf~~~L~~~G 382 (425)
.|.+-|.+.|.+.|
T Consensus 142 ~R~~gf~~~l~~~~ 155 (288)
T cd01538 142 LFFNGAMSVLKPLI 155 (288)
T ss_pred HHHHHHHHHHHhcc
Confidence 36777889999887
No 304
>PRK05876 short chain dehydrogenase; Provisional
Probab=20.39 E-value=4.2e+02 Score=25.54 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHh
Q 014420 403 NDTAEAASRVHEALAE 418 (425)
Q Consensus 403 ~et~r~A~~I~~~l~~ 418 (425)
-+.+.+|+.+.+.+..
T Consensus 224 ~~~~dva~~~~~ai~~ 239 (275)
T PRK05876 224 LGVDDIAQLTADAILA 239 (275)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 4577788888887754
No 305
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.38 E-value=2.2e+02 Score=27.95 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCC-CcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHH
Q 014420 254 KPLVVVNVGGPTG-CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIK 310 (425)
Q Consensus 254 ~p~vavLIGG~s~-~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~ 310 (425)
.+.-.++++|+++ .+.++.++-.++.+.+.+.+.....+++..+.=+.++..+..+.
T Consensus 33 ~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~ 90 (284)
T cd00950 33 NGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKR 90 (284)
T ss_pred cCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHH
Confidence 4555677777765 44577777666655544433212245666665455555555444
No 306
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=20.37 E-value=6.5e+02 Score=26.09 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=89.2
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHh---------cCeEEEEeCCCCcHHHHHHHHHhhCCC-----------C-cEEEec
Q 014420 264 PTGCCRYGSDLAKQLTAHLLNVLVS---------CGSIRISFSMRTPEKVSKIIIKELGNN-----------P-KVHIWD 322 (425)
Q Consensus 264 ~s~~~~~~~~~a~~L~~~l~~l~~~---------~gsl~iT~SRRTP~~~~~~L~~~l~~~-----------~-~v~iwd 322 (425)
+...|.++++....+ ++=.++.++ ..=+|+|.++|=|-.....|+..++-. | .+.+-+
T Consensus 74 ~~~~~~LT~~a~~L~-~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 74 SVPWFRLTPEAEDLL-REERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred CCceEEeCHHHHHHH-HHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 445677777654333 332222221 124889999999999999999888721 2 223334
Q ss_pred CCCCChHHHHHHHcCeEEEcCCChHHHHH------HHHcCCcEEEEcCCCC---ChhHHHHHHHHHHCCCeeecCCCCCC
Q 014420 323 GEEPNPHLGHLAWADAFVVTADSISLISE------ACSTGKPVYVVGAERC---TWKFTDFHKSLRERGVVRPFTGSEDM 393 (425)
Q Consensus 323 ~~g~NPy~~~La~AD~ivVTaDSvSMlsE------A~atGkPV~v~~l~~~---~~k~~rf~~~L~~~G~~r~f~g~~~~ 393 (425)
.++.+++..+..|-+..-||+=.-.-..| ...-+.+-+-+..|.. ..++...++.+++.-++.||++.. .
T Consensus 153 ~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~-~ 231 (335)
T PF11955_consen 153 LEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDAS-H 231 (335)
T ss_pred cCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCcc-C
Confidence 34556788888887666666543333322 2233334344444433 358889999999999999997643 1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHH
Q 014420 394 SDSWSYPPLNDTAEAASRVHEALA 417 (425)
Q Consensus 394 ~~~~~~~PL~et~r~A~~I~~~l~ 417 (425)
+..++ + -.=.|+.+.++|.|.
T Consensus 232 l~~~s--~-~~EKRaVaVlHElLS 252 (335)
T PF11955_consen 232 LDPGS--D-EAEKRAVAVLHELLS 252 (335)
T ss_pred CCCCC--h-HHHhHHHHHHHHHHH
Confidence 22222 2 223467778888775
No 307
>PRK05872 short chain dehydrogenase; Provisional
Probab=20.34 E-value=7.8e+02 Score=23.91 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHhc
Q 014420 402 LNDTAEAASRVHEALAER 419 (425)
Q Consensus 402 L~et~r~A~~I~~~l~~~ 419 (425)
+-..+++|+.|...+..+
T Consensus 218 ~~~~~~va~~i~~~~~~~ 235 (296)
T PRK05872 218 TTSVEKCAAAFVDGIERR 235 (296)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 346778888888877653
No 308
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=20.31 E-value=1.5e+02 Score=25.38 Aligned_cols=71 Identities=25% Similarity=0.242 Sum_probs=37.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHH-HHHHHHhhCCC---CcEEEecCCCCChHHHHHHHcCeEEEcCC
Q 014420 269 RYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKV-SKIIIKELGNN---PKVHIWDGEEPNPHLGHLAWADAFVVTAD 344 (425)
Q Consensus 269 ~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~-~~~L~~~l~~~---~~v~iwd~~g~NPy~~~La~AD~ivVTaD 344 (425)
+|.++++.+++..|... ..+++.+|+-+|||--. ...+=+.+... +.++.. .+......|+.++.-+...+
T Consensus 7 HYp~~d~~~~l~~La~~--t~~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~---~e~~l~~~l~~~g~~~~r~~ 81 (97)
T PF07109_consen 7 HYPAEDAAQMLAHLASR--TRGSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPH---REEDLRRALAAAGWRIGRTE 81 (97)
T ss_pred ccCHHHHHHHHHHHHHh--ccCcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEe---CHHHHHHHHHhCCCeeeecc
Confidence 46677655554444332 45899999999999753 33332222211 222221 12235566666666555444
No 309
>PRK05443 polyphosphate kinase; Provisional
Probab=20.26 E-value=1.3e+03 Score=26.34 Aligned_cols=113 Identities=25% Similarity=0.317 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHHHHh---cCeEEEEeCCCCcHHHHHHHHHhhCCCC-c-----------------------------
Q 014420 271 GSDLAKQLTAHLLNVLVS---CGSIRISFSMRTPEKVSKIIIKELGNNP-K----------------------------- 317 (425)
Q Consensus 271 ~~~~a~~L~~~l~~l~~~---~gsl~iT~SRRTP~~~~~~L~~~l~~~~-~----------------------------- 317 (425)
+++.+..|.+.+...+++ +.-+.+-.++..|+++.+.|.+.+.-.+ .
T Consensus 239 dee~~~dl~~~i~~~Lk~R~~g~~VRle~~~~mp~~~~~~L~~~l~l~~~~~~~~~gplnl~~l~~~~~~~~~~L~~~p~ 318 (691)
T PRK05443 239 DEEEAEDLLEALEKELKRRRFGEVVRLEVEADMPEELLEFLLEELGLSEDDVYRVDGPLNLTDLMQLPDVDRPDLKFPPF 318 (691)
T ss_pred cccchHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHcCcChhHEEEcCCcccHHHHHhhcCCChhhccCCCC
Confidence 555566777777766653 2367888888888888888877776110 1
Q ss_pred -----------------------EEEecCCCCChHHHHHHHcCe------EEE-----cCCC--hHHHHHHHHcCCcEEE
Q 014420 318 -----------------------VHIWDGEEPNPHLGHLAWADA------FVV-----TADS--ISLISEACSTGKPVYV 361 (425)
Q Consensus 318 -----------------------v~iwd~~g~NPy~~~La~AD~------ivV-----TaDS--vSMlsEA~atGkPV~v 361 (425)
+..++++..+|...++..|-. |-. ..|| +.-|.+|+-.||-|.|
T Consensus 319 ~p~~~~~~~~~~~if~~I~~~DiLLh~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~v 398 (691)
T PRK05443 319 TPRRPPRLDHGGDIFAAIREKDILLHHPYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTV 398 (691)
T ss_pred CCCCCcccccCCCHHHHHhhCCEEEECCccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEE
Confidence 112233445666777777765 222 2354 3446778888999988
Q ss_pred EcCCCCChhHH-----HHHHHHHHCCCee
Q 014420 362 VGAERCTWKFT-----DFHKSLRERGVVR 385 (425)
Q Consensus 362 ~~l~~~~~k~~-----rf~~~L~~~G~~r 385 (425)
+=. ..+ +|. .+.+.|+++|+--
T Consensus 399 lve-~ka-rfde~~n~~~~~~L~~aGv~V 425 (691)
T PRK05443 399 LVE-LKA-RFDEEANIRWARRLEEAGVHV 425 (691)
T ss_pred EEc-cCc-cccHHHHHHHHHHHHHcCCEE
Confidence 632 111 332 3578999998854
No 310
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.24 E-value=4.7e+02 Score=24.50 Aligned_cols=86 Identities=21% Similarity=0.114 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLAW 335 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La~ 335 (425)
+|+++.|-.|- ...-+. -++.|.++ .-...+.|..-.|||+.+.+..++.-+..-+++|-..-+..-..|+.
T Consensus 4 ~V~IIMGS~SD-~~~mk~----Aa~~L~~f-gi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmv-- 75 (162)
T COG0041 4 KVGIIMGSKSD-WDTMKK----AAEILEEF-GVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMV-- 75 (162)
T ss_pred eEEEEecCcch-HHHHHH----HHHHHHHc-CCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhh--
Confidence 67888875543 222222 22222221 11248999999999999999987754432334444333333344544
Q ss_pred cCeEEEcCCChHHHHHHHHcCCcEEEEcCC
Q 014420 336 ADAFVVTADSISLISEACSTGKPVYVVGAE 365 (425)
Q Consensus 336 AD~ivVTaDSvSMlsEA~atGkPV~v~~l~ 365 (425)
|+.|-+||+=+|.+
T Consensus 76 ----------------Aa~T~lPViGVPv~ 89 (162)
T COG0041 76 ----------------AAKTPLPVIGVPVQ 89 (162)
T ss_pred ----------------hhcCCCCeEeccCc
Confidence 34566777777665
No 311
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.22 E-value=6.8e+02 Score=23.38 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEEecCCCCChHHHHHH
Q 014420 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHIWDGEEPNPHLGHLA 334 (425)
Q Consensus 255 p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~iwd~~g~NPy~~~La 334 (425)
.++++++||+++ ++.+.++.| ++.+.++.+. .||+.+ ..+.+.+. . ...+..|-...+-...++.
T Consensus 7 ~k~~lItGas~g---IG~~~a~~l-------~~~G~~v~~~-~~~~~~-~~~~l~~~--~-~~~~~~Dl~~~~~~~~~~~ 71 (255)
T PRK06463 7 GKVALITGGTRG---IGRAIAEAF-------LREGAKVAVL-YNSAEN-EAKELREK--G-VFTIKCDVGNRDQVKKSKE 71 (255)
T ss_pred CCEEEEeCCCCh---HHHHHHHHH-------HHCCCEEEEE-eCCcHH-HHHHHHhC--C-CeEEEecCCCHHHHHHHHH
Confidence 467899999876 555443333 3345565554 344443 33344331 1 1222334433333334433
Q ss_pred -------HcCeEEEcCC
Q 014420 335 -------WADAFVVTAD 344 (425)
Q Consensus 335 -------~AD~ivVTaD 344 (425)
.-|.+|..++
T Consensus 72 ~~~~~~~~id~li~~ag 88 (255)
T PRK06463 72 VVEKEFGRVDVLVNNAG 88 (255)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 3477776653
No 312
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=20.15 E-value=6.9e+02 Score=23.03 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVS 305 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~ 305 (425)
.+++++||+++ ++...++.| ++.+.++.++. +|.++...
T Consensus 3 k~ilItGas~g---iG~~la~~l-------~~~g~~v~~~~-~~~~~~~~ 41 (248)
T PRK06947 3 KVVLITGASRG---IGRATAVLA-------AARGWSVGINY-ARDAAAAE 41 (248)
T ss_pred cEEEEeCCCCc---HHHHHHHHH-------HHCCCEEEEEe-CCCHHHHH
Confidence 36788888765 555433333 33444655544 44454443
No 313
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=20.11 E-value=2.2e+02 Score=28.90 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcC-----------eEEEEeCCCCcHHHHHHHHHhhCC
Q 014420 254 KPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCG-----------SIRISFSMRTPEKVSKIIIKELGN 314 (425)
Q Consensus 254 ~p~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~g-----------sl~iT~SRRTP~~~~~~L~~~l~~ 314 (425)
..-+++-+||..+|..++...-+.++..|.++++..| +..+--|-|--+.+.+++++..+.
T Consensus 98 GkavllsLGGAdghIeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~ 169 (332)
T COG3469 98 GKAVLLSLGGADGHIELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKN 169 (332)
T ss_pred CcEEEEEccCccceEEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHh
Confidence 3446777999999999998766677777777776422 456666777778888888887764
No 314
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.09 E-value=5.5e+02 Score=24.83 Aligned_cols=10 Identities=20% Similarity=-0.087 Sum_probs=6.9
Q ss_pred CcEEEEEcCC
Q 014420 255 PLVVVNVGGP 264 (425)
Q Consensus 255 p~vavLIGG~ 264 (425)
.+++|+.||+
T Consensus 5 ~k~~lItGas 14 (274)
T PRK08415 5 GKKGLIVGVA 14 (274)
T ss_pred CcEEEEECCC
Confidence 4567777775
No 315
>PRK07074 short chain dehydrogenase; Provisional
Probab=20.03 E-value=5.9e+02 Score=23.72 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHhcCeEEEEeCCCCcHHHHHHHHHhhCCCCcEEE--ecCCCCChHHHHH
Q 014420 256 LVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVSKIIIKELGNNPKVHI--WDGEEPNPHLGHL 333 (425)
Q Consensus 256 ~vavLIGG~s~~~~~~~~~a~~L~~~l~~l~~~~gsl~iT~SRRTP~~~~~~L~~~l~~~~~v~i--wd~~g~NPy~~~L 333 (425)
.+++++||+++ ++...+..| ++++.++.++ +| .++..... .+.+.. ..+.+ .|-...+.+...+
T Consensus 3 k~ilItGat~~---iG~~la~~L-------~~~g~~v~~~-~r-~~~~~~~~-~~~~~~-~~~~~~~~D~~~~~~~~~~~ 68 (257)
T PRK07074 3 RTALVTGAAGG---IGQALARRF-------LAAGDRVLAL-DI-DAAALAAF-ADALGD-ARFVPVACDLTDAASLAAAL 68 (257)
T ss_pred CEEEEECCcch---HHHHHHHHH-------HHCCCEEEEE-eC-CHHHHHHH-HHHhcC-CceEEEEecCCCHHHHHHHH
Confidence 36788888775 455443333 2344455443 44 44444333 233322 23433 3443333444444
Q ss_pred HH-------cCeEEEcCC
Q 014420 334 AW-------ADAFVVTAD 344 (425)
Q Consensus 334 a~-------AD~ivVTaD 344 (425)
.. .|.+|..+.
T Consensus 69 ~~~~~~~~~~d~vi~~ag 86 (257)
T PRK07074 69 ANAAAERGPVDVLVANAG 86 (257)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 43 588888875
No 316
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=20.01 E-value=97 Score=25.56 Aligned_cols=51 Identities=22% Similarity=0.196 Sum_probs=36.2
Q ss_pred CChH-HHHHHHcCeEEEcCCChHHHHHHHHcCCcEEEEcCCCCChhHHHHHHH
Q 014420 326 PNPH-LGHLAWADAFVVTADSISLISEACSTGKPVYVVGAERCTWKFTDFHKS 377 (425)
Q Consensus 326 ~NPy-~~~La~AD~ivVTaDSvSMlsEA~atGkPV~v~~l~~~~~k~~rf~~~ 377 (425)
.|++ ..-++.||.|++-+| +...-+.-..||||+-.++...-.+-..+++.
T Consensus 28 ~~~lt~~~i~~Ad~VIia~d-~~i~~~~rf~gk~v~~~s~~~ai~~~~~vl~~ 79 (88)
T PRK10474 28 ENELTAEDVASADMVILTKD-IGIKFEERFAGKTIVRVNISDAVKRADAIMSK 79 (88)
T ss_pred CCCCCHHHHHhCCEEEEEec-CCCcchhccCCCceEEecHHHHHHCHHHHHHH
Confidence 5666 588999999999999 44334667889999998876544333444333
Done!