BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014423
         (425 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B0BSH0|MLTC_ACTPJ Membrane-bound lytic murein transglycosylase C OS=Actinobacillus
           pleuropneumoniae serotype 3 (strain JL03) GN=mltC PE=3
           SV=1
          Length = 365

 Score = 34.7 bits (78), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 55  QTEMRAVAYIVVRRHF--RSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITH 112
             E+RA  Y+ + R    R  I+P +I  I E+ES     AV Y        +GLMQ+  
Sbjct: 189 HIEVRARQYLPLVRKMAKRYGIEPSLILGIMEVESAFNPYAVSY-----ANAIGLMQVVP 243

Query: 113 KNAVW-LFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLKWL 153
           + A   +F+  G   +D + +   L+ P  +I  G  YL  L
Sbjct: 244 RTAGRDIFARKG---FDGQPDRAYLYNPSQNIDSGTLYLAIL 282


>sp|B3GYW8|MLTC_ACTP7 Membrane-bound lytic murein transglycosylase C OS=Actinobacillus
           pleuropneumoniae serotype 7 (strain AP76) GN=mltC PE=3
           SV=1
          Length = 365

 Score = 34.7 bits (78), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 55  QTEMRAVAYIVVRRHF--RSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITH 112
             E+RA  Y+ + R    R  I+P +I  I E+ES     AV Y        +GLMQ+  
Sbjct: 189 HIEVRARQYLPLVRKMAKRYGIEPSLILGIMEVESAFNPYAVSY-----ANAIGLMQVVP 243

Query: 113 KNAVW-LFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLKWL 153
           + A   +F+  G   +D + +   L+ P  +I  G  YL  L
Sbjct: 244 RTAGRDIFARKG---FDGQPDRAYLYNPSQNIDSGTLYLAIL 282


>sp|A3N339|MLTC_ACTP2 Membrane-bound lytic murein transglycosylase C OS=Actinobacillus
           pleuropneumoniae serotype 5b (strain L20) GN=mltC PE=3
           SV=1
          Length = 365

 Score = 34.7 bits (78), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 55  QTEMRAVAYIVVRRHF--RSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITH 112
             E+RA  Y+ + R    R  I+P +I  I E+ES     AV Y        +GLMQ+  
Sbjct: 189 HIEVRARQYLPLVRKMAKRYGIEPSLILGIMEVESAFNPYAVSY-----ANAIGLMQVVP 243

Query: 113 KNAVW-LFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLKWL 153
           + A   +F+  G   +D + +   L+ P  +I  G  YL  L
Sbjct: 244 RTAGRDIFARKG---FDGQPDRAYLYNPSQNIDSGTLYLAIL 282


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,871,379
Number of Sequences: 539616
Number of extensions: 6963777
Number of successful extensions: 17321
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17321
Number of HSP's gapped (non-prelim): 7
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)