Query 014423
Match_columns 425
No_of_seqs 422 out of 2635
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15470 emtA lytic murein end 99.9 2.6E-26 5.7E-31 213.7 12.8 108 285-394 40-155 (203)
2 PRK15328 invasion protein IagB 99.9 9.6E-26 2.1E-30 203.8 11.9 125 59-194 16-144 (160)
3 PRK11671 mltC murein transglyc 99.9 7.2E-26 1.6E-30 227.0 12.2 128 284-413 192-358 (359)
4 PRK15470 emtA lytic murein end 99.9 1.5E-25 3.2E-30 208.7 12.6 117 55-179 33-155 (203)
5 PRK11619 lytic murein transgly 99.9 1.8E-25 3.9E-30 241.9 11.7 126 286-416 481-629 (644)
6 PRK13722 lytic transglycosylas 99.9 2.4E-25 5.2E-30 202.0 10.6 122 61-193 19-146 (169)
7 cd01021 GEWL Goose Egg White L 99.9 3.2E-24 7E-29 194.3 10.5 114 285-413 32-165 (166)
8 PRK15328 invasion protein IagB 99.9 5.4E-24 1.2E-28 192.5 10.9 119 285-412 19-143 (160)
9 PRK11671 mltC murein transglyc 99.9 1.1E-23 2.3E-28 211.4 10.8 113 58-178 189-307 (359)
10 PRK13722 lytic transglycosylas 99.9 9.4E-24 2E-28 191.6 9.4 114 287-410 22-144 (169)
11 PHA00368 internal virion prote 99.9 1.9E-23 4.1E-28 224.6 11.4 121 285-416 12-150 (1315)
12 PRK11619 lytic murein transgly 99.9 2.6E-23 5.6E-28 225.2 10.6 109 60-178 478-586 (644)
13 cd01021 GEWL Goose Egg White L 99.9 2.2E-22 4.7E-27 182.4 9.9 106 57-179 27-139 (166)
14 PHA00368 internal virion prote 99.9 3.2E-21 6.8E-26 207.6 13.0 105 59-179 9-113 (1315)
15 PHA00658 putative lysin 99.8 2.5E-21 5.4E-26 199.7 9.3 119 287-411 280-431 (720)
16 PRK10783 mltD membrane-bound l 99.8 4.7E-21 1E-25 200.0 10.4 121 284-418 104-251 (456)
17 PF01464 SLT: Transglycosylase 99.8 1.1E-21 2.5E-26 168.6 3.8 109 63-181 1-109 (121)
18 PRK10859 membrane-bound lytic 99.8 9E-21 2E-25 199.9 10.8 96 285-394 291-392 (482)
19 PRK10859 membrane-bound lytic 99.8 3.3E-20 7E-25 195.7 11.1 102 59-180 288-393 (482)
20 PF01464 SLT: Transglycosylase 99.8 1.2E-20 2.5E-25 162.3 2.5 105 287-400 2-113 (121)
21 PHA00658 putative lysin 99.8 2.3E-19 5E-24 185.3 8.6 114 60-179 276-399 (720)
22 PRK10783 mltD membrane-bound l 99.8 8.1E-19 1.8E-23 183.3 10.6 102 59-179 102-207 (456)
23 PRK13888 conjugal transfer pro 99.8 2.6E-18 5.6E-23 158.6 9.5 124 59-194 12-136 (206)
24 COG0741 MltE Soluble lytic mur 99.7 1.1E-17 2.4E-22 162.7 11.9 122 286-414 141-286 (296)
25 COG0741 MltE Soluble lytic mur 99.7 1.8E-17 3.8E-22 161.2 10.4 104 63-178 141-245 (296)
26 cd00254 LT_GEWL Lytic Transgly 99.7 3.3E-17 7.1E-22 137.7 8.5 89 76-179 1-91 (113)
27 cd00254 LT_GEWL Lytic Transgly 99.7 9.8E-17 2.1E-21 134.8 7.6 100 299-407 1-111 (113)
28 COG4623 Predicted soluble lyti 99.6 4.1E-16 8.9E-21 155.0 9.9 116 285-414 272-401 (473)
29 COG4623 Predicted soluble lyti 99.6 2.1E-15 4.5E-20 150.0 9.3 109 71-197 279-396 (473)
30 PRK13864 type IV secretion sys 99.6 4.6E-15 9.9E-20 141.7 10.2 94 71-175 38-157 (245)
31 PRK13888 conjugal transfer pro 99.5 3.2E-14 6.8E-19 131.6 6.5 103 287-399 17-126 (206)
32 PRK13864 type IV secretion sys 99.2 3.1E-11 6.8E-16 115.5 9.6 110 288-409 30-174 (245)
33 PRK13843 conjugal transfer pro 98.9 1.1E-09 2.4E-14 101.1 5.9 94 72-175 13-141 (207)
34 PF13702 Lysozyme_like: Lysozy 98.6 1.2E-07 2.6E-12 85.7 8.8 87 285-394 9-102 (160)
35 PF13702 Lysozyme_like: Lysozy 98.4 1.1E-06 2.4E-11 79.5 9.5 95 56-178 3-101 (160)
36 TIGR02282 MltB lytic murein tr 98.0 1.8E-05 3.8E-10 78.4 8.9 80 285-369 69-196 (290)
37 TIGR02282 MltB lytic murein tr 98.0 2.8E-05 6.1E-10 77.0 10.1 89 58-152 65-194 (290)
38 TIGR02283 MltB_2 lytic murein 97.9 3.4E-05 7.3E-10 76.8 9.0 80 285-369 75-201 (300)
39 PF13406 SLT_2: Transglycosyla 97.9 5.6E-05 1.2E-09 74.0 8.8 89 58-152 70-198 (262)
40 PRK10760 murein hydrolase B; P 97.9 3.8E-05 8.2E-10 77.9 7.8 79 286-369 137-262 (359)
41 PF13406 SLT_2: Transglycosyla 97.8 9.3E-05 2E-09 72.5 9.7 80 285-369 74-200 (262)
42 PRK13843 conjugal transfer pro 97.8 3.5E-05 7.6E-10 71.6 6.0 85 295-389 13-140 (207)
43 TIGR02283 MltB_2 lytic murein 97.8 0.00014 3E-09 72.5 10.1 89 58-152 71-199 (300)
44 PRK10760 murein hydrolase B; P 97.8 0.00011 2.3E-09 74.7 9.4 89 58-152 132-260 (359)
45 cd00119 LYZ1 C-type lysozyme ( 97.7 2.3E-05 5.1E-10 68.0 3.5 51 61-112 8-58 (123)
46 smart00263 LYZ1 Alpha-lactalbu 97.1 0.00044 9.4E-09 60.5 3.1 39 73-112 22-60 (127)
47 COG3953 SLT domain proteins [G 97.1 0.00041 8.8E-09 65.7 3.1 64 79-152 18-86 (235)
48 COG2951 MltB Membrane-bound ly 96.5 0.0052 1.1E-07 62.4 6.6 88 59-152 110-238 (343)
49 COG3953 SLT domain proteins [G 96.3 0.0047 1E-07 58.7 4.2 57 304-369 20-88 (235)
50 COG2951 MltB Membrane-bound ly 95.7 0.02 4.3E-07 58.2 6.0 82 283-369 111-240 (343)
51 PF06737 Transglycosylas: Tran 95.0 0.098 2.1E-06 41.8 6.8 64 76-151 4-67 (77)
52 PF00062 Lys: C-type lysozyme/ 94.5 0.011 2.3E-07 51.7 0.2 36 76-112 25-60 (125)
53 COG4764 Uncharacterized protei 94.0 0.5 1.1E-05 42.8 9.5 103 66-177 49-162 (197)
54 PF06871 TraH_2: TraH_2; Inte 92.7 0.28 6E-06 45.4 5.9 100 66-175 7-141 (206)
55 PF01832 Glucosaminidase: Mann 92.5 0.15 3.2E-06 44.5 4.0 32 62-93 2-33 (136)
56 PF06737 Transglycosylas: Tran 91.0 1.1 2.5E-05 35.8 7.0 61 300-366 5-67 (77)
57 cd00119 LYZ1 C-type lysozyme ( 90.7 0.19 4.2E-06 43.8 2.6 34 295-328 19-58 (123)
58 COG4764 Uncharacterized protei 90.0 3.2 6.9E-05 37.7 9.7 122 289-416 49-192 (197)
59 PF01832 Glucosaminidase: Mann 89.8 0.55 1.2E-05 40.9 4.8 39 287-325 4-46 (136)
60 smart00047 LYZ2 Lysozyme subfa 87.1 1.1 2.5E-05 40.1 5.1 38 56-93 10-47 (147)
61 PF06871 TraH_2: TraH_2; Inte 86.7 0.55 1.2E-05 43.5 2.8 61 320-389 69-140 (206)
62 smart00263 LYZ1 Alpha-lactalbu 84.0 0.77 1.7E-05 40.3 2.3 32 297-328 23-60 (127)
63 smart00047 LYZ2 Lysozyme subfa 80.8 4.2 9.1E-05 36.4 5.9 38 286-323 17-58 (147)
64 PRK12710 flgJ flagellar rod as 79.6 2.6 5.6E-05 42.1 4.5 36 58-93 134-169 (291)
65 PRK05684 flgJ flagellar rod as 79.4 2.6 5.6E-05 42.5 4.5 37 57-93 155-191 (312)
66 PRK12709 flgJ flagellar rod as 77.9 3.1 6.7E-05 42.1 4.5 36 58-93 177-212 (320)
67 TIGR02541 flagell_FlgJ flagell 76.9 3.5 7.5E-05 41.3 4.5 38 56-93 150-187 (294)
68 PF11860 DUF3380: Protein of u 75.2 5 0.00011 37.2 4.8 60 104-174 90-157 (175)
69 PRK12712 flgJ flagellar rod as 74.5 4.3 9.2E-05 41.5 4.5 39 55-93 198-236 (344)
70 PRK12713 flgJ flagellar rod as 72.9 4.9 0.00011 41.0 4.5 39 56-94 183-221 (339)
71 PRK08581 N-acetylmuramoyl-L-al 71.5 5.3 0.00012 43.6 4.6 37 57-93 323-359 (619)
72 PF07182 DUF1402: Protein of u 71.3 5.8 0.00013 38.7 4.3 68 322-389 181-262 (303)
73 PF07759 DUF1615: Protein of u 66.8 1.4 3.1E-05 43.8 -0.8 73 100-177 122-194 (319)
74 PRK12711 flgJ flagellar rod as 66.8 8.2 0.00018 39.8 4.6 36 58-93 219-254 (392)
75 COG1705 FlgJ Muramidase (flage 65.9 10 0.00022 35.9 4.7 36 58-93 47-82 (201)
76 PRK05684 flgJ flagellar rod as 62.5 17 0.00036 36.8 5.8 36 276-311 151-186 (312)
77 PRK06347 autolysin; Reviewed 60.8 11 0.00024 41.4 4.5 36 58-93 154-189 (592)
78 PRK12709 flgJ flagellar rod as 58.4 21 0.00045 36.2 5.7 34 278-311 174-207 (320)
79 TIGR02541 flagell_FlgJ flagell 54.4 27 0.00058 35.1 5.7 26 286-311 157-182 (294)
80 cd00736 bacteriophage_lambda_l 51.4 73 0.0016 28.8 7.5 41 101-151 60-100 (151)
81 PRK12710 flgJ flagellar rod as 50.9 32 0.00069 34.4 5.6 27 285-311 138-164 (291)
82 PRK08581 N-acetylmuramoyl-L-al 45.7 39 0.00086 37.1 5.7 26 286-311 329-354 (619)
83 PRK12712 flgJ flagellar rod as 43.8 46 0.00099 34.1 5.5 27 285-311 205-231 (344)
84 PRK12711 flgJ flagellar rod as 41.7 56 0.0012 33.9 5.8 27 285-311 223-249 (392)
85 PF10715 REGB_T4: Endoribonucl 41.3 0.98 2.1E-05 40.8 -6.2 96 287-391 19-124 (150)
86 PRK06347 autolysin; Reviewed 38.2 58 0.0013 35.9 5.6 27 285-311 158-184 (592)
87 PRK12713 flgJ flagellar rod as 37.6 56 0.0012 33.5 5.0 27 285-311 189-215 (339)
88 PF07759 DUF1615: Protein of u 36.1 13 0.00029 37.1 0.3 71 316-392 122-194 (319)
89 COG3179 Predicted chitinase [G 32.8 1.8E+02 0.0039 27.4 7.1 71 104-177 118-190 (206)
90 COG1705 FlgJ Muramidase (flage 29.0 67 0.0015 30.4 3.7 25 287-311 53-77 (201)
91 PF05497 Destabilase: Destabil 25.1 2E+02 0.0042 25.0 5.6 109 74-190 1-115 (119)
92 PF07182 DUF1402: Protein of u 24.9 46 0.001 32.7 1.9 73 104-176 179-264 (303)
93 PRK10356 hypothetical protein; 20.9 67 0.0015 31.9 2.2 18 74-91 149-166 (274)
94 PHA02750 hypothetical protein; 20.6 2.7E+02 0.006 25.7 5.8 81 11-93 124-210 (240)
No 1
>PRK15470 emtA lytic murein endotransglycosylase E; Provisional
Probab=99.94 E-value=2.6e-26 Score=213.74 Aligned_cols=108 Identities=27% Similarity=0.303 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhH-HHHHHHcCCCcCCCCCCCCCCCHHHHHHHH
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTA-FWIYMELGYRAYKVDSADDLTKPFVSMYFG 361 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta-~~~~~~~g~~~~~~~s~~~l~dP~~NI~~G 361 (425)
..+|++++++|+|||.||.|||+|||+ |.++|++||+|||||||+|| +|+++++|+.... +.++|+||+.||++|
T Consensus 40 ~~~~~~aa~~y~iDp~Ll~Aii~qES~Fnp~A~S~aGA~GLMQImP~TA~~~~a~~~g~~~~~--~~~~L~dP~~NI~~G 117 (203)
T PRK15470 40 MPISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP--TTSELKNPERNISMG 117 (203)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCCcCCCCCeeeccCCHHHHHHHHHHHcCCCCCC--ChhhcCCHHHHHHHH
Confidence 569999999999999999999999999 99999999999999999997 7888888875321 257899999999999
Q ss_pred HHHHHHHH-HhcCCCCch----hHHhHHhccCcccccc
Q 014423 362 AAYLSYLS-EYEGKERTP----QFVVQAYLEGPKNVNL 394 (425)
Q Consensus 362 a~YL~~l~-~~~g~~~~~----~~alaAYNaGp~~v~~ 394 (425)
++||++|. +|..+.... .+++||||+|||+|.+
T Consensus 118 a~YL~~L~~r~~~~i~~~~~~~~~~iAAYNaG~g~v~r 155 (203)
T PRK15470 118 AAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLR 155 (203)
T ss_pred HHHHHHHHHhccccCCcHHHHHHHHHHHHhcchHHHHH
Confidence 99999998 776654332 2456999999999986
No 2
>PRK15328 invasion protein IagB; Provisional
Probab=99.93 E-value=9.6e-26 Score=203.81 Aligned_cols=125 Identities=25% Similarity=0.320 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCC
Q 014423 59 RAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFR 138 (425)
Q Consensus 59 ~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~d 138 (425)
.++.+|+.+.+.+|+|||.||.||+++||+|+|.+++.+ .++.+|+|||||||.|+.++ +.+|+ + ..++++|
T Consensus 16 ~a~~~c~~~aa~~y~Idp~Ll~AIa~~ES~f~p~avs~n-~~gs~d~GLMQIn~~~~~~l-~~~gv-----~-~~~ll~D 87 (160)
T PRK15328 16 TAWADCWLQAEKMFNIESELLYAIAQQESAMKPGAIGHN-RDGSTDLGLMQINSFHMKRL-KKMGI-----S-EKQLLQD 87 (160)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCCEecC-CCCCcccChhhcCHHHHHHH-HHcCC-----C-hHHHhcC
Confidence 567789999999999999999999999999999997642 35678999999999888776 34443 2 1346799
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHHHhhcCCccccccc----ccchHHHHHHHHHh
Q 014423 139 PLVSIYFGAAYLKWLSTFQDKERTEEFVIRAYKGGTKKATHK----STLPYWKSYISVKE 194 (425)
Q Consensus 139 P~~NI~~Ga~yL~~l~~~~~~~~~~~~alaAYNaG~g~v~~~----~~~~~~~~y~~~k~ 194 (425)
||.||.+|++||+.++++++ ++| .||++||+|++..... ...+++++|.+++.
T Consensus 88 Pc~NI~~Ga~~L~~~~~~~g--~~~-~alaaYNaG~~~~~~~~~~~Y~~kV~~~y~~l~~ 144 (160)
T PRK15328 88 PCISVIVGASILSDMMKIYG--YSW-EAVGAYNAGTSPKRSDIRKRYAKKIWENYRKLKG 144 (160)
T ss_pred HHHHHHHHHHHHHHHHHHcC--ChH-HhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987 456 5999999999976532 33467888888753
No 3
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=99.93 E-value=7.2e-26 Score=226.99 Aligned_cols=128 Identities=26% Similarity=0.249 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhHH-HHHHHcCCCcCCCCCCCCCCCHHHHHHH
Q 014423 284 AEIILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAF-WIYMELGYRAYKVDSADDLTKPFVSMYF 360 (425)
Q Consensus 284 ~~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~-~~~~~~g~~~~~~~s~~~l~dP~~NI~~ 360 (425)
+..+|.+++++|||||.||+|||++||+ |.++|++||.|||||||.||. ++.+..|.. +..+.++||||+.||.+
T Consensus 192 Y~~lI~~aa~~ygvdp~LI~AIi~qES~FnP~AvS~agA~GLMQImP~TA~~dv~~~~g~~--g~~~~~~L~DP~~NI~~ 269 (359)
T PRK11671 192 YLPMVRKASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHTAGKDVFRMKGKS--GQPSRSYLFDPANNIDT 269 (359)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCccCCCCceeeeeCHhhHHHHHHHhcccc--CCCchhhcCCHHHHHHH
Confidence 3569999999999999999999999999 999999999999999999996 455544432 22345679999999999
Q ss_pred HHHHHHHHH-HhcCCCCch----hHHhHHhccCcccccc-------------------------------cccchHHHHH
Q 014423 361 GAAYLSYLS-EYEGKERTP----QFVVQAYLEGPKNVNL-------------------------------QETGPSWLKF 404 (425)
Q Consensus 361 Ga~YL~~l~-~~~g~~~~~----~~alaAYNaGp~~v~~-------------------------------~~~~~y~~k~ 404 (425)
|++||+.|. +|.+++.++ .++|||||+|||+|.+ .||+.|+.|+
T Consensus 270 Gt~YL~~L~~ry~~~i~~p~~~~~~alAAYNaG~G~V~r~~~~~~~~a~~~in~~~p~~vy~~l~~~iP~~ETR~YV~KV 349 (359)
T PRK11671 270 GTAYLAILQNVYLGGITNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMSPGDVYQTLTTRHPSAESRRYLYKV 349 (359)
T ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHccCHHHHHHHHhcCccchHHHHhcCChHHHHHHHHHhCCchhHHHHHHHH
Confidence 999999999 887765332 4789999999999963 4788899999
Q ss_pred HHHHHhhhh
Q 014423 405 EQALGNYEA 413 (425)
Q Consensus 405 ~~~~~~y~~ 413 (425)
.+.++.|+.
T Consensus 350 ~~~~~~Y~~ 358 (359)
T PRK11671 350 NTAQKSYRR 358 (359)
T ss_pred HHHHHHHhc
Confidence 999988874
No 4
>PRK15470 emtA lytic murein endotransglycosylase E; Provisional
Probab=99.93 E-value=1.5e-25 Score=208.73 Aligned_cols=117 Identities=25% Similarity=0.250 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccH-HHHHHHhCCcccCCCCCC
Q 014423 55 QTEMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNA-VWLFSEMGYRLYDVEQNP 133 (425)
Q Consensus 55 ~~~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta-~~~~~~~g~~~~~~~~~~ 133 (425)
.....++..+|.+.+.+|+|||.||+|||++||+|||.| +|++||+|||||||.|| +|+.+.+|+... .+.
T Consensus 33 ~~r~~~y~~~~~~aa~~y~iDp~Ll~Aii~qES~Fnp~A-----~S~aGA~GLMQImP~TA~~~~a~~~g~~~~---~~~ 104 (203)
T PRK15470 33 VQRAMQWMPISQKAGAAWGVDPQLITAIIAIESGGNPNA-----VSKSNAIGLMQLKASTSGRDVYRRMGWSGE---PTT 104 (203)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCC-----cCCCCCeeeccCCHHHHHHHHHHHcCCCCC---CCh
Confidence 445667788999999999999999999999999999999 99999999999999997 677777776421 223
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHccCC-CCCH----HHHHHhhcCCcccccc
Q 014423 134 DLLFRPLVSIYFGAAYLKWLSTFQDK-ERTE----EFVIRAYKGGTKKATH 179 (425)
Q Consensus 134 ~~l~dP~~NI~~Ga~yL~~l~~~~~~-~~~~----~~alaAYNaG~g~v~~ 179 (425)
++|+||+.||++|++||++|.+++-. -.+. ..+++|||+|+|+|.+
T Consensus 105 ~~L~dP~~NI~~Ga~YL~~L~~r~~~~i~~~~~~~~~~iAAYNaG~g~v~r 155 (203)
T PRK15470 105 SELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLR 155 (203)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHhcchHHHHH
Confidence 47999999999999999999875421 1121 2456999999999985
No 5
>PRK11619 lytic murein transglycosylase; Provisional
Probab=99.92 E-value=1.8e-25 Score=241.91 Aligned_cols=126 Identities=25% Similarity=0.273 Sum_probs=114.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHHH
Q 014423 286 IILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGAA 363 (425)
Q Consensus 286 ~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga~ 363 (425)
..|.+++++++|||.||.|||++||+ |.++|++||.|||||||.||+++++++|+..|. +.++|+||+.||.+|++
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S~~gA~GLMQimP~Ta~~~a~~~g~~~~~--~~~~l~dp~~Ni~~G~~ 558 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPKARSPVGASGLMQIMPGTATHTVKMFSIPGYS--SSSQLLDPETNINIGTS 558 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCccCCCCeeeeeecHHHHHHHHHHcCCCCCC--ChhhcCCHHHHHHHHHH
Confidence 47899999999999999999999999 999999999999999999999999999986554 24689999999999999
Q ss_pred HHHHHH-HhcCCCCchhHHhHHhccCcccccc--------------------cccchHHHHHHHHHHhhhhhcc
Q 014423 364 YLSYLS-EYEGKERTPQFVVQAYLEGPKNVNL--------------------QETGPSWLKFEQALGNYEATKS 416 (425)
Q Consensus 364 YL~~l~-~~~g~~~~~~~alaAYNaGp~~v~~--------------------~~~~~y~~k~~~~~~~y~~~~~ 416 (425)
||+.|+ +|+|++ .+|++|||+|||+|.+ .||++|++||++....|+....
T Consensus 559 yL~~l~~~~~~~~---~la~aaYNaGpg~v~~w~~~~~~~~~~~~~ie~iP~~ETR~YV~~Vl~~~~~Y~~~l~ 629 (644)
T PRK11619 559 YLEYVYQQFGNNR---ILASAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAYYRYFMG 629 (644)
T ss_pred HHHHHHHHcCCCH---HHHHhHHcCCHHHHHHHHhhccCCCcHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999 777776 8999999999999976 3899999999999999987654
No 6
>PRK13722 lytic transglycosylase; Provisional
Probab=99.92 E-value=2.4e-25 Score=202.01 Aligned_cols=122 Identities=25% Similarity=0.278 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHH
Q 014423 61 VAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPL 140 (425)
Q Consensus 61 va~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~ 140 (425)
.++|+..++.+|+|||.||.||+++||+|||.+++.++. +++|+|||||||.|+.|+.+ +|+. ..++++|||
T Consensus 19 ~~~C~~~Aa~~y~vdp~LL~AIi~~ES~fnp~Avs~n~~-gs~d~GLMQIn~~~~~~l~~-~gi~------~~~ll~DPc 90 (169)
T PRK13722 19 ATDCFDLAGRDYKIDPDLLRAISWKESRYRVNAIGINPV-TGYGSGLMQVDSQHFNELAR-YGIK------PEHLTTDPC 90 (169)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCCeecCCC-CCeeecCCcccHHHHHHHHH-cCCC------HHHHccCHH
Confidence 357999999999999999999999999999999663221 23579999999999888865 4442 123569999
Q ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHhhcCCcccccc--cccc----hHHHHHHHHH
Q 014423 141 VSIYFGAAYLKWLSTFQDKERTEEFVIRAYKGGTKKATH--KSTL----PYWKSYISVK 193 (425)
Q Consensus 141 ~NI~~Ga~yL~~l~~~~~~~~~~~~alaAYNaG~g~v~~--~~~~----~~~~~y~~~k 193 (425)
.||++|++||+.++++++ ++| .||++||+|++++.. ..+. ++++.|..++
T Consensus 91 ~NI~~Gaw~L~~~~~~~g--~~w-~AvaaYNaG~~~~~~~~~~r~~Ya~kV~~~y~~~~ 146 (169)
T PRK13722 91 MNIYTGAYYLAIAFKKWG--VSW-EAVGAYNAGFRKTERQNQRRLAYASEVYRIYTGIK 146 (169)
T ss_pred HHHHHHHHHHHHHHHHcC--Cch-heeeecCCCCCccccchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987 466 499999999986643 2222 4566666654
No 7
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=99.91 E-value=3.2e-24 Score=194.28 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCC----CCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHH
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFVN----GVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSM 358 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~----s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI 358 (425)
..+|++++++|+|||.||+|||.+||+ +.++ |+.||+|||||||.|+. ..+.+||+.||
T Consensus 32 ~~~i~~aa~~y~idp~Li~Aii~~ES~f~~~a~~~~~s~~ga~GLMQi~p~ta~---------------~~~~~d~~~ni 96 (166)
T cd01021 32 QSLIKKVGQKKCIDPAVIAAIISRESRAGKVLKNGWGGAGNGFGLMQVDKRSHH---------------PVGAWDSEEHL 96 (166)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHcCCCcccccCCCCCCCCeEEeeECccccC---------------CCCCCCHHHHH
Confidence 468999999999999999999999998 7776 78899999999999975 23689999999
Q ss_pred HHHHHHHHHHH-HhcCCCC------chhHHhHHhccCcccccc-------cccchHHHHHHHHHHhhhh
Q 014423 359 YFGAAYLSYLS-EYEGKER------TPQFVVQAYLEGPKNVNL-------QETGPSWLKFEQALGNYEA 413 (425)
Q Consensus 359 ~~Ga~YL~~l~-~~~g~~~------~~~~alaAYNaGp~~v~~-------~~~~~y~~k~~~~~~~y~~ 413 (425)
..|+.||..++ ++.++.+ ...++|||||+||++|++ .+|..|+++++...+.|+.
T Consensus 97 ~~g~~~L~~~l~~~~~~~~~w~~~~~l~~aLAAYNAG~g~V~~y~gipp~~et~~Yv~~Vlar~~~~~~ 165 (166)
T cd01021 97 SQATEILIDRIKAIQRKFPTWTKEQQLKGGISAYNAGAGNVRSYEGMDIGTTGNDYSNDVVARAQYYKR 165 (166)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHhccCHHHHhhcCCCCCCcchHHHHHHHHHHHHHHhc
Confidence 99999999887 4433322 135899999999999988 4899999999999888864
No 8
>PRK15328 invasion protein IagB; Provisional
Probab=99.90 E-value=5.4e-24 Score=192.45 Aligned_cols=119 Identities=21% Similarity=0.142 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCC----CCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHH
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGV----SPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSM 358 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~----~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI 358 (425)
...|.+++++|+|||.||.||+++||+ |.++|. .+++|||||||.|+.++ +++|+. ..++++|||.||
T Consensus 19 ~~c~~~aa~~y~Idp~Ll~AIa~~ES~f~p~avs~n~~gs~d~GLMQIn~~~~~~l-~~~gv~-----~~~ll~DPc~NI 92 (160)
T PRK15328 19 ADCWLQAEKMFNIESELLYAIAQQESAMKPGAIGHNRDGSTDLGLMQINSFHMKRL-KKMGIS-----EKQLLQDPCISV 92 (160)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCCEecCCCCCcccChhhcCHHHHHHH-HHcCCC-----hHHHhcCHHHHH
Confidence 358999999999999999999999999 888864 46899999999999876 466653 124578999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHhHHhccCcccccccccchHHHHHHHHHHhhh
Q 014423 359 YFGAAYLSYLSEYEGKERTPQFVVQAYLEGPKNVNLQETGPSWLKFEQALGNYE 412 (425)
Q Consensus 359 ~~Ga~YL~~l~~~~g~~~~~~~alaAYNaGp~~v~~~~~~~y~~k~~~~~~~y~ 412 (425)
.+|++||+.+++.+|+. +.+|++||+||+..+...+..|..|+.+.++...
T Consensus 93 ~~Ga~~L~~~~~~~g~~---~~alaaYNaG~~~~~~~~~~~Y~~kV~~~y~~l~ 143 (160)
T PRK15328 93 IVGASILSDMMKIYGYS---WEAVGAYNAGTSPKRSDIRKRYAKKIWENYRKLK 143 (160)
T ss_pred HHHHHHHHHHHHHcCCh---HHhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999444555 7899999999998877777789888866665553
No 9
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=99.90 E-value=1.1e-23 Score=211.42 Aligned_cols=113 Identities=27% Similarity=0.304 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHH-HHHHhCCcccCCCCCCCCC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVW-LFSEMGYRLYDVEQNPDLL 136 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~-~~~~~g~~~~~~~~~~~~l 136 (425)
...+.++|.+.+.+|+|||.||+|||++||+|||.| +|++||+|||||||.||.+ +.+..|..+ . .++++|
T Consensus 189 ~~~Y~~lI~~aa~~ygvdp~LI~AIi~qES~FnP~A-----vS~agA~GLMQImP~TA~~dv~~~~g~~g--~-~~~~~L 260 (359)
T PRK11671 189 AHKYLPMVRKASRKYGVDESLILAIMQTESSFNPYA-----VSRSDALGLMQVVQHTAGKDVFRMKGKSG--Q-PSRSYL 260 (359)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC-----ccCCCCceeeeeCHhhHHHHHHHhccccC--C-Cchhhc
Confidence 456778999999999999999999999999999999 9999999999999999964 444444321 1 134579
Q ss_pred CCHHHHHHHHHHHHHHHHHccCCC-----CCHHHHHHhhcCCccccc
Q 014423 137 FRPLVSIYFGAAYLKWLSTFQDKE-----RTEEFVIRAYKGGTKKAT 178 (425)
Q Consensus 137 ~dP~~NI~~Ga~yL~~l~~~~~~~-----~~~~~alaAYNaG~g~v~ 178 (425)
|||+.||.+|++||+.|.++|.+. ..+.+|++|||+|+|+|.
T Consensus 261 ~DP~~NI~~Gt~YL~~L~~ry~~~i~~p~~~~~~alAAYNaG~G~V~ 307 (359)
T PRK11671 261 FDPANNIDTGTAYLAILQNVYLGGITNPTSRRYAVITAYNGGAGSVL 307 (359)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHccCHHHHH
Confidence 999999999999999999988521 123479999999999996
No 10
>PRK13722 lytic transglycosylase; Provisional
Probab=99.90 E-value=9.4e-24 Score=191.61 Aligned_cols=114 Identities=21% Similarity=0.130 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC--CCCCC--CCC--CccccccChhhHHHHHHHcCCCcCCCCCCC-CCCCHHHHHH
Q 014423 287 ILSKYFSTKGVKPTYLCAIAEMVSM--RFVNG--VSP--RIGLMGIDYSTAFWIYMELGYRAYKVDSAD-DLTKPFVSMY 359 (425)
Q Consensus 287 ~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s--~~g--a~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~-~l~dP~~NI~ 359 (425)
-|.+++++|+|||.||.||+++||+ |.++| .+| +.|||||||.|+.++++ +|+. .+ .++|||.||+
T Consensus 22 C~~~Aa~~y~vdp~LL~AIi~~ES~fnp~Avs~n~~gs~d~GLMQIn~~~~~~l~~-~gi~------~~~ll~DPc~NI~ 94 (169)
T PRK13722 22 CFDLAGRDYKIDPDLLRAISWKESRYRVNAIGINPVTGYGSGLMQVDSQHFNELAR-YGIK------PEHLTTDPCMNIY 94 (169)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHcCCCCCCeecCCCCCeeecCCcccHHHHHHHHH-cCCC------HHHHccCHHHHHH
Confidence 6888999999999999999999999 88885 443 58999999999999875 6643 33 4599999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHhHHhccCcccccc--cccchHHHHHHHHHHh
Q 014423 360 FGAAYLSYLSEYEGKERTPQFVVQAYLEGPKNVNL--QETGPSWLKFEQALGN 410 (425)
Q Consensus 360 ~Ga~YL~~l~~~~g~~~~~~~alaAYNaGp~~v~~--~~~~~y~~k~~~~~~~ 410 (425)
+|++||+.+++.+|+. +.||++||+||+++.. .++..|.+|+.+.+..
T Consensus 95 ~Gaw~L~~~~~~~g~~---w~AvaaYNaG~~~~~~~~~~r~~Ya~kV~~~y~~ 144 (169)
T PRK13722 95 TGAYYLAIAFKKWGVS---WEAVGAYNAGFRKTERQNQRRLAYASEVYRIYTG 144 (169)
T ss_pred HHHHHHHHHHHHcCCc---hheeeecCCCCCccccchHHHHHHHHHHHHHHHH
Confidence 9999999999444665 7899999999997754 5677788888665433
No 11
>PHA00368 internal virion protein D
Probab=99.89 E-value=1.9e-23 Score=224.59 Aligned_cols=121 Identities=22% Similarity=0.212 Sum_probs=109.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHH
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGA 362 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga 362 (425)
..+|.+++++|||||.||.|||++||+ |.++|++||.|||||||.||++ +|+. +. .++++||+.||.+|+
T Consensus 12 ddLIekAAqkyGVppdLL~ALIrQES~FNP~AvS~AGA~GLMQLMPaTAK~----lGL~-i~---~DDL~DPe~NI~AGA 83 (1315)
T PHA00368 12 DGLFQKAADAHGVSYDLLRKVGWDESRFNPTAKSPTGPKGLMQFTKATAKA----LGLI-VD---DDDRLDPELAIDAGA 83 (1315)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCCCCCEeCCCCEeeeeecHHHHHH----cCCC-CC---cccccCHHHHHHHHH
Confidence 458999999999999999999999999 9999999999999999999985 4553 22 579999999999999
Q ss_pred HHHHHHH-HhcCCCCchhHHhHHhccCcccccc---------------cccchHHHHHHHHHHhhhhhcc
Q 014423 363 AYLSYLS-EYEGKERTPQFVVQAYLEGPKNVNL---------------QETGPSWLKFEQALGNYEATKS 416 (425)
Q Consensus 363 ~YL~~l~-~~~g~~~~~~~alaAYNaGp~~v~~---------------~~~~~y~~k~~~~~~~y~~~~~ 416 (425)
+||++|. +|.|++ .++++|||+||++|.+ .+|++|+.|+++.+..|+.+..
T Consensus 84 rYLr~LldrF~Gd~---lLALAAYNAGPGrVkdAq~~A~d~gDF~eLPeETRNYVpKVLAn~~VYkaGd~ 150 (1315)
T PHA00368 84 RYLADLVGKYDGDE---LKAALAYNQGEGRLGAPQLEAYDKGDFASISEEGRNYLRNLLDVAKSPKSGDL 150 (1315)
T ss_pred HHHHHHHHHcCCCH---HHHHHHHcCCcchHHHHHhhcccCCCcccCCHHHHHHHHHHHHHHHHHhccch
Confidence 9999999 788887 8899999999999965 3899999999999999999854
No 12
>PRK11619 lytic murein transglycosylase; Provisional
Probab=99.89 E-value=2.6e-23 Score=225.16 Aligned_cols=109 Identities=24% Similarity=0.243 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCH
Q 014423 60 AVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRP 139 (425)
Q Consensus 60 ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP 139 (425)
++.++|...+.+++|||.||+|||++||+|||.| +|++||+|||||||.|++++.+.+|+..|. .+++|+||
T Consensus 478 ~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a-----~S~~gA~GLMQimP~Ta~~~a~~~g~~~~~---~~~~l~dp 549 (644)
T PRK11619 478 AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA-----RSPVGASGLMQIMPGTATHTVKMFSIPGYS---SSSQLLDP 549 (644)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC-----ccCCCCeeeeeecHHHHHHHHHHcCCCCCC---ChhhcCCH
Confidence 3456777888899999999999999999999999 999999999999999999999988875442 13479999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHhhcCCccccc
Q 014423 140 LVSIYFGAAYLKWLSTFQDKERTEEFVIRAYKGGTKKAT 178 (425)
Q Consensus 140 ~~NI~~Ga~yL~~l~~~~~~~~~~~~alaAYNaG~g~v~ 178 (425)
+.||.+|++||+.|.++|+ +++.+|++|||+|||+|.
T Consensus 550 ~~Ni~~G~~yL~~l~~~~~--~~~~la~aaYNaGpg~v~ 586 (644)
T PRK11619 550 ETNINIGTSYLEYVYQQFG--NNRILASAAYNAGPGRVR 586 (644)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCHHHHHhHHcCCHHHHH
Confidence 9999999999999999997 689999999999999996
No 13
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=99.87 E-value=2.2e-22 Score=182.40 Aligned_cols=106 Identities=17% Similarity=0.090 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCC
Q 014423 57 EMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLL 136 (425)
Q Consensus 57 ~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l 136 (425)
.+..+.++|.+.+.+|+|||.||.|||.+||+|+|.+++ .+.|+.||+|||||||.|+.. ...
T Consensus 27 ~~~~y~~~i~~aa~~y~idp~Li~Aii~~ES~f~~~a~~-~~~s~~ga~GLMQi~p~ta~~----------------~~~ 89 (166)
T cd01021 27 AMKKYQSLIKKVGQKKCIDPAVIAAIISRESRAGKVLKN-GWGGAGNGFGLMQVDKRSHHP----------------VGA 89 (166)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHcCCCccccc-CCCCCCCCeEEeeECccccCC----------------CCC
Confidence 456788999999999999999999999999999999954 224888999999999988731 158
Q ss_pred CCHHHHHHHHHHHHHHHHHcc----CCC---CCHHHHHHhhcCCcccccc
Q 014423 137 FRPLVSIYFGAAYLKWLSTFQ----DKE---RTEEFVIRAYKGGTKKATH 179 (425)
Q Consensus 137 ~dP~~NI~~Ga~yL~~l~~~~----~~~---~~~~~alaAYNaG~g~v~~ 179 (425)
|||+.||..|+.||..+++.+ .+| ..+.+||+|||+|+|+|..
T Consensus 90 ~d~~~ni~~g~~~L~~~l~~~~~~~~~w~~~~~l~~aLAAYNAG~g~V~~ 139 (166)
T cd01021 90 WDSEEHLSQATEILIDRIKAIQRKFPTWTKEQQLKGGISAYNAGAGNVRS 139 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHhccCHHHHhh
Confidence 899999999999999777644 221 2456899999999999975
No 14
>PHA00368 internal virion protein D
Probab=99.85 E-value=3.2e-21 Score=207.61 Aligned_cols=105 Identities=26% Similarity=0.185 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCC
Q 014423 59 RAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFR 138 (425)
Q Consensus 59 ~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~d 138 (425)
..+..+|.+.+.+|+|||.||.||+.+||+|||.| +|++||+|||||||.||+++ |+. ...++++|
T Consensus 9 s~YddLIekAAqkyGVppdLL~ALIrQES~FNP~A-----vS~AGA~GLMQLMPaTAK~l----GL~-----i~~DDL~D 74 (1315)
T PHA00368 9 SEYDGLFQKAADAHGVSYDLLRKVGWDESRFNPTA-----KSPTGPKGLMQFTKATAKAL----GLI-----VDDDDRLD 74 (1315)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCCC-----EeCCCCEeeeeecHHHHHHc----CCC-----CCcccccC
Confidence 45667899999999999999999999999999999 99999999999999999865 332 12458999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHHHhhcCCcccccc
Q 014423 139 PLVSIYFGAAYLKWLSTFQDKERTEEFVIRAYKGGTKKATH 179 (425)
Q Consensus 139 P~~NI~~Ga~yL~~l~~~~~~~~~~~~alaAYNaG~g~v~~ 179 (425)
|+.||++|++||+.|.++|+ +++.+|++|||+|+++|..
T Consensus 75 Pe~NI~AGArYLr~LldrF~--Gd~lLALAAYNAGPGrVkd 113 (1315)
T PHA00368 75 PELAIDAGARYLADLVGKYD--GDELKAALAYNQGEGRLGA 113 (1315)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHcCCcchHHH
Confidence 99999999999999999986 6899999999999999864
No 15
>PHA00658 putative lysin
Probab=99.84 E-value=2.5e-21 Score=199.68 Aligned_cols=119 Identities=18% Similarity=0.075 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCCH---------HHHHHHHHHhcC--CC------CCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCC
Q 014423 287 ILSKYFSTKGVKP---------TYLCAIAEMVSM--RF------VNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSAD 349 (425)
Q Consensus 287 ~i~~~a~~~~vdp---------~Ll~Ai~~~ES~--~~------a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~ 349 (425)
.+...+....|+| .+..+++.+||+ ++ ++|++||.|||||||.||+|+++.+|+..+. ..
T Consensus 280 ~~~~aa~~~~~~~~~~~~~~~~~~f~~~i~~ESgGnq~sa~G~~AvSpAGA~GLMQLMPsTAr~iAKklGL~~d~---~r 356 (720)
T PHA00658 280 RAGLAAATDAVGKVPIQVSDGERAFNIAVGTESGGRQFGADGKPLTSPKGAVGIAQVMPDTAPEAAKLAGLPWDE---NR 356 (720)
T ss_pred hhhhhhhhccccccccccccHHHHHHHHHHhhcCCCcCCCCCCccccCCCCeecHhcCHHHHHHHHHHcCCCCCc---cc
Confidence 4555566666654 446799999999 54 5899999999999999999999999986332 34
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HhcCCCCchhHHhHHhccCcccccc---------------cccchHHHHHHHHHHhh
Q 014423 350 DLTKPFVSMYFGAAYLSYLS-EYEGKERTPQFVVQAYLEGPKNVNL---------------QETGPSWLKFEQALGNY 411 (425)
Q Consensus 350 ~l~dP~~NI~~Ga~YL~~l~-~~~g~~~~~~~alaAYNaGp~~v~~---------------~~~~~y~~k~~~~~~~y 411 (425)
+++||+.||.+|++||++|+ +|.|++ .+|+||||+|||+|++ .||+.|+.|++..+...
T Consensus 357 ~L~DPe~NI~lGa~YL~~LLkrF~GD~---~LALAAYNAGPGrV~rWIk~agdddwIEsIP~ETRnYV~KVL~aY~~~ 431 (720)
T PHA00658 357 YRNDAAYNRALGMAYFQKQLRDFGGDL---PKAYAAYNAGPGALQSALKDAKDGNWLALLPKETQDYVVKNMQAYNAG 431 (720)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHhcCHhHHHHHHHhccCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 888888 9999999999999986 58889998876665544
No 16
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=99.84 E-value=4.7e-21 Score=199.96 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHH
Q 014423 284 AEIILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFG 361 (425)
Q Consensus 284 ~~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~G 361 (425)
+..+|.++++++|||++|+. |+.+||+ |+++|++||.|||||||+||++ +|++ .+.++|+..||..|
T Consensus 104 y~~~i~~~~~~~~lp~~l~~-l~~~ES~f~p~A~S~~gA~Gl~Q~mp~Ta~~----~gl~------~~~~~d~r~~i~~~ 172 (456)
T PRK10783 104 YMYWIVGQIKKRNMPMELVL-LPIVESAFDPHATSGANAAGIWQIIPSTGRN----YGLK------QTRWYDARRDVVAS 172 (456)
T ss_pred HHHHHHHHHHHcCCCHHHHH-HHHHhcCCCCCCccCCCccceeeecHHHHHH----hccC------cccccCcccChhhh
Confidence 34589999999999999997 9999999 9999999999999999999985 4543 34667777777655
Q ss_pred H----HHHHHHH-HhcCCCCchhHHhHHhccCcccccc--------------------cccchHHHHHHHHHHhhhhhcc
Q 014423 362 A----AYLSYLS-EYEGKERTPQFVVQAYLEGPKNVNL--------------------QETGPSWLKFEQALGNYEATKS 416 (425)
Q Consensus 362 a----~YL~~l~-~~~g~~~~~~~alaAYNaGp~~v~~--------------------~~~~~y~~k~~~~~~~y~~~~~ 416 (425)
+ +||+.|. +|.||| .+|+||||+|||+|.+ .||..|+.|++.....|+.+.+
T Consensus 173 t~aa~~yL~~l~~~f~g~~---~lalAAYNaG~g~v~~~~~~~~~~~~~~d~w~~~lp~ETr~YV~~~la~~~i~~~~~~ 249 (456)
T PRK10783 173 TTAALDMMQRLNKMFDGDW---LLTVAAYNSGEGRVMKAIKANKAKGKPTDFWSLSLPRETKIYVPKMLALSDILKNSKR 249 (456)
T ss_pred HHHHHHHHHHHHHHhCCCH---HHHHHHHcCCHhHHHHHHHHhhhcCCCccchhcCccHHHHHHHHHHHHHHHHHhhHHh
Confidence 5 9999999 777998 9999999999999976 3899999999999999999888
Q ss_pred cC
Q 014423 417 KI 418 (425)
Q Consensus 417 ~~ 418 (425)
|+
T Consensus 250 ~~ 251 (456)
T PRK10783 250 YG 251 (456)
T ss_pred cC
Confidence 63
No 17
>PF01464 SLT: Transglycosylase SLT domain; InterPro: IPR008258 Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine, with the concomitant formation of a 1,6-anhydrobond in the muramic acid residue. There are both soluble (Slt enzymes) and membrane-bound (Mlt enzymes) lytic transglycosylases that differ in size, sequence, activity, specificity and location. The multi-domain structure of the 70 Kd soluble lytic transglycosylase Slt70 is known []. Slt70 has 3 distinct domains, each rich in alpha helices: an N-terminal superhelical U-shaped domain (U-domain; IPR008939 from INTERPRO), a superhelical linker domain (L-domain, IPR012289 from INTERPRO), and a C-terminal catalytic domain (IPR008258 from INTERPRO). Both the U- and L-domain share a similar superhelical structure. These two domains are connected, and together form a closed ring with a large central hole; the catalytic domain is packed on top of, and interacts with, this ring. The catalytic domain has a lysosome-like fold. This entry represents the catalytic domain, which is structurally conserved in some membrane-bound lytic glycosylases and in bacteriophage transglycosylases, even though their sequences can differ considerably proteins []. The most conserved part of this domain is its N-terminal extremity that contains two conserved serines and a glutamate, which have been shown [] to be involved in the catalytic mechanism. This family is distantly related to IPR001916 from INTERPRO.; PDB: 2Y8P_B 3MGW_A 1QTE_A 1SLY_A 1QSA_A 153L_A 154L_A 3BKV_A 3BKH_A 1LSP_A ....
Probab=99.84 E-value=1.1e-21 Score=168.61 Aligned_cols=109 Identities=31% Similarity=0.353 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHH
Q 014423 63 YIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVS 142 (425)
Q Consensus 63 ~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~N 142 (425)
++|.+.+.+++|+|.+|.||+.+||+|+|.+++.+ .++.+++|||||+|.|+.++....+. ..++++||+.|
T Consensus 1 ~~i~~~a~~~~v~~~~l~ai~~~ES~~~~~a~~~~-~~~~~a~GlmQi~~~t~~~~~~~~~~-------~~~~~~dp~~n 72 (121)
T PF01464_consen 1 DYIKAAAKKYGVPPSLLAAIAYQESGFNPNAVSYN-SNGSGAYGLMQINPATWKDYGRKGGL-------SPDDLFDPEDN 72 (121)
T ss_dssp -HHHHHHHHHTS-HHHHHHHHHHHHTTCTTTBTTB-ETTTTEETTTTEETTTSHHHSHTHCT-------SHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHhcCCCCCCcCCC-CCCCcceeccccCCcccchhhhcccc-------cchhhhCHHHH
Confidence 47888999999999999999999999999994433 33788999999999999988665432 23479999999
Q ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHhhcCCcccccccc
Q 014423 143 IYFGAAYLKWLSTFQDKERTEEFVIRAYKGGTKKATHKS 181 (425)
Q Consensus 143 I~~Ga~yL~~l~~~~~~~~~~~~alaAYNaG~g~v~~~~ 181 (425)
|.+|++||+++.++++ +++.+++++||+|++.+....
T Consensus 73 i~~g~~~L~~~~~~~~--~~~~~a~~aYn~G~~~~~~~~ 109 (121)
T PF01464_consen 73 IQAGAKYLKWLYKRYG--GDWERAIAAYNGGPGNVKKAI 109 (121)
T ss_dssp HHHHHHHHHHHHTTST--HHHHHHHHHHHH-GGGHHCST
T ss_pred HHHHHHHHHHHHHHcC--CcHHHHHHHHHCChhHHHHHH
Confidence 9999999999999886 389999999999999887543
No 18
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=99.83 E-value=9e-21 Score=199.92 Aligned_cols=96 Identities=26% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHH
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGA 362 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga 362 (425)
+.+|+++++ ||||.||.||+++||+ |+++|+.||.|||||||.||++ +| +++++||+.||++|+
T Consensus 291 ~~~~~~~~~--~~d~~ll~a~~~~ES~~~~~a~s~~ga~Glmq~~p~ta~~----~~--------~~~~~dp~~ni~~g~ 356 (482)
T PRK10859 291 QPLFEKYAG--ELDWRLLAAIAYQESHWNPQATSPTGVRGLMMLTRNTAQS----MG--------VTDRLDPEQSIRGGA 356 (482)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHhCCCCCCCCcCCCCEecceeCHHHHHH----cC--------CCccCCHHHHHHHHH
Confidence 568999999 9999999999999999 9999999999999999999874 44 358999999999999
Q ss_pred HHHHHHH-HhcCCCC---chhHHhHHhccCcccccc
Q 014423 363 AYLSYLS-EYEGKER---TPQFVVQAYLEGPKNVNL 394 (425)
Q Consensus 363 ~YL~~l~-~~~g~~~---~~~~alaAYNaGp~~v~~ 394 (425)
+||++|. +|.++.. ..++||||||+|||+|.+
T Consensus 357 ~yl~~l~~~~~~~~~~~~~~~~alaaYN~G~g~v~~ 392 (482)
T PRK10859 357 RYLQDLMERLPESIPEPERIWFALAAYNIGYGHMLD 392 (482)
T ss_pred HHHHHHHHHcCCCCCccchHHHHHHHHcChHHHHHH
Confidence 9999999 7765331 247999999999999965
No 19
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=99.82 E-value=3.3e-20 Score=195.71 Aligned_cols=102 Identities=25% Similarity=0.191 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCC
Q 014423 59 RAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFR 138 (425)
Q Consensus 59 ~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~d 138 (425)
..+..++.+.+. +|||.||.||+++||+|||+| +|++||+|||||||.|+.++ |. . +++|
T Consensus 288 ~~~~~~~~~~~~--~~d~~ll~a~~~~ES~~~~~a-----~s~~ga~Glmq~~p~ta~~~----~~-----~----~~~d 347 (482)
T PRK10859 288 PKYQPLFEKYAG--ELDWRLLAAIAYQESHWNPQA-----TSPTGVRGLMMLTRNTAQSM----GV-----T----DRLD 347 (482)
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHhCCCCCCC-----CcCCCCEecceeCHHHHHHc----CC-----C----ccCC
Confidence 345566666665 999999999999999999999 99999999999999998754 32 2 6899
Q ss_pred HHHHHHHHHHHHHHHHHccCCC----CCHHHHHHhhcCCccccccc
Q 014423 139 PLVSIYFGAAYLKWLSTFQDKE----RTEEFVIRAYKGGTKKATHK 180 (425)
Q Consensus 139 P~~NI~~Ga~yL~~l~~~~~~~----~~~~~alaAYNaG~g~v~~~ 180 (425)
|+.||++|++||++|.+++++. +.+.+|++|||+|+|+|...
T Consensus 348 p~~ni~~g~~yl~~l~~~~~~~~~~~~~~~~alaaYN~G~g~v~~~ 393 (482)
T PRK10859 348 PEQSIRGGARYLQDLMERLPESIPEPERIWFALAAYNIGYGHMLDA 393 (482)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHcChHHHHHHH
Confidence 9999999999999999988631 23568999999999999754
No 20
>PF01464 SLT: Transglycosylase SLT domain; InterPro: IPR008258 Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine, with the concomitant formation of a 1,6-anhydrobond in the muramic acid residue. There are both soluble (Slt enzymes) and membrane-bound (Mlt enzymes) lytic transglycosylases that differ in size, sequence, activity, specificity and location. The multi-domain structure of the 70 Kd soluble lytic transglycosylase Slt70 is known []. Slt70 has 3 distinct domains, each rich in alpha helices: an N-terminal superhelical U-shaped domain (U-domain; IPR008939 from INTERPRO), a superhelical linker domain (L-domain, IPR012289 from INTERPRO), and a C-terminal catalytic domain (IPR008258 from INTERPRO). Both the U- and L-domain share a similar superhelical structure. These two domains are connected, and together form a closed ring with a large central hole; the catalytic domain is packed on top of, and interacts with, this ring. The catalytic domain has a lysosome-like fold. This entry represents the catalytic domain, which is structurally conserved in some membrane-bound lytic glycosylases and in bacteriophage transglycosylases, even though their sequences can differ considerably proteins []. The most conserved part of this domain is its N-terminal extremity that contains two conserved serines and a glutamate, which have been shown [] to be involved in the catalytic mechanism. This family is distantly related to IPR001916 from INTERPRO.; PDB: 2Y8P_B 3MGW_A 1QTE_A 1SLY_A 1QSA_A 153L_A 154L_A 3BKV_A 3BKH_A 1LSP_A ....
Probab=99.80 E-value=1.2e-20 Score=162.34 Aligned_cols=105 Identities=30% Similarity=0.233 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC--CCCCC----CCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHH
Q 014423 287 ILSKYFSTKGVKPTYLCAIAEMVSM--RFVNG----VSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYF 360 (425)
Q Consensus 287 ~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s----~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~ 360 (425)
+|.+++.+++|+|.+|.||+.+||+ +.++| ..++.|||||+|.|+.+++...+. +.++++||+.||.+
T Consensus 2 ~i~~~a~~~~v~~~~l~ai~~~ES~~~~~a~~~~~~~~~a~GlmQi~~~t~~~~~~~~~~------~~~~~~dp~~ni~~ 75 (121)
T PF01464_consen 2 YIKAAAKKYGVPPSLLAAIAYQESGFNPNAVSYNSNGSGAYGLMQINPATWKDYGRKGGL------SPDDLFDPEDNIQA 75 (121)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHHHTTCTTTBTTBETTTTEETTTTEETTTSHHHSHTHCT------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhcCCCCCCcCCCCCCCcceeccccCCcccchhhhcccc------cchhhhCHHHHHHH
Confidence 5889999999999999999999999 99999 889999999999999988766542 25789999999999
Q ss_pred HHHHHHHHHHhcC-CCCchhHHhHHhccCcccccccccchH
Q 014423 361 GAAYLSYLSEYEG-KERTPQFVVQAYLEGPKNVNLQETGPS 400 (425)
Q Consensus 361 Ga~YL~~l~~~~g-~~~~~~~alaAYNaGp~~v~~~~~~~y 400 (425)
|++||+++..+.+ ++ .+++++||+|++++.+.....+
T Consensus 76 g~~~L~~~~~~~~~~~---~~a~~aYn~G~~~~~~~~~~~~ 113 (121)
T PF01464_consen 76 GAKYLKWLYKRYGGDW---ERAIAAYNGGPGNVKKAIRYVY 113 (121)
T ss_dssp HHHHHHHHHTTSTHHH---HHHHHHHHH-GGGHHCSTTTTT
T ss_pred HHHHHHHHHHHcCCcH---HHHHHHHHCChhHHHHHHHHHh
Confidence 9999999995554 66 9999999999999987655443
No 21
>PHA00658 putative lysin
Probab=99.78 E-value=2.3e-19 Score=185.30 Aligned_cols=114 Identities=12% Similarity=-0.020 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhcCCCH---------HHHHHHHHHHcCCCcCC-cccCCCCCCCCcccccCccccHHHHHHHhCCcccCC
Q 014423 60 AVAYIVVRRHFRSQIDP---------DMICAIAELESDRQLLA-VRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDV 129 (425)
Q Consensus 60 ava~~i~~~~~~~~vdp---------~Ll~Aia~~ES~f~p~a-~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~ 129 (425)
.+.+.+-..+....|+| .++.+++.+||++|+.. .+...+|++||+|||||||.||+|+++.+|+..+ .
T Consensus 276 dmd~~~~~aa~~~~~~~~~~~~~~~~~~f~~~i~~ESgGnq~sa~G~~AvSpAGA~GLMQLMPsTAr~iAKklGL~~d-~ 354 (720)
T PHA00658 276 DMDGRAGLAAATDAVGKVPIQVSDGERAFNIAVGTESGGRQFGADGKPLTSPKGAVGIAQVMPDTAPEAAKLAGLPWD-E 354 (720)
T ss_pred hhhhhhhhhhhhccccccccccccHHHHHHHHHHhhcCCCcCCCCCCccccCCCCeecHhcCHHHHHHHHHHcCCCCC-c
Confidence 34444444444444443 57899999999999975 2233489999999999999999999999887521 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhhcCCcccccc
Q 014423 130 EQNPDLLFRPLVSIYFGAAYLKWLSTFQDKERTEEFVIRAYKGGTKKATH 179 (425)
Q Consensus 130 ~~~~~~l~dP~~NI~~Ga~yL~~l~~~~~~~~~~~~alaAYNaG~g~v~~ 179 (425)
..+++||..||.+|++||++|+++|+ ++|.+|++|||+|||+|..
T Consensus 355 ---~r~L~DPe~NI~lGa~YL~~LLkrF~--GD~~LALAAYNAGPGrV~r 399 (720)
T PHA00658 355 ---NRYRNDAAYNRALGMAYFQKQLRDFG--GDLPKAYAAYNAGPGALQS 399 (720)
T ss_pred ---ccccCCHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHhcCHhHHHH
Confidence 12589999999999999999999997 7999999999999999974
No 22
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=99.77 E-value=8.1e-19 Score=183.25 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCC
Q 014423 59 RAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFR 138 (425)
Q Consensus 59 ~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~d 138 (425)
..+...|.+...+++||++|++ |+.+||+|||.| +|++||.|||||||.||+++ |+. .+.++|
T Consensus 102 ~~y~~~i~~~~~~~~lp~~l~~-l~~~ES~f~p~A-----~S~~gA~Gl~Q~mp~Ta~~~----gl~-------~~~~~d 164 (456)
T PRK10783 102 EPYMYWIVGQIKKRNMPMELVL-LPIVESAFDPHA-----TSGANAAGIWQIIPSTGRNY----GLK-------QTRWYD 164 (456)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHhcCCCCCC-----ccCCCccceeeecHHHHHHh----ccC-------cccccC
Confidence 3566788889999999999998 999999999999 99999999999999999763 432 135778
Q ss_pred HHHHHHHHH----HHHHHHHHccCCCCCHHHHHHhhcCCcccccc
Q 014423 139 PLVSIYFGA----AYLKWLSTFQDKERTEEFVIRAYKGGTKKATH 179 (425)
Q Consensus 139 P~~NI~~Ga----~yL~~l~~~~~~~~~~~~alaAYNaG~g~v~~ 179 (425)
+..||..|+ +||+.|.+.|+ ++|.+|++|||+|+|+|.+
T Consensus 165 ~r~~i~~~t~aa~~yL~~l~~~f~--g~~~lalAAYNaG~g~v~~ 207 (456)
T PRK10783 165 ARRDVVASTTAALDMMQRLNKMFD--GDWLLTVAAYNSGEGRVMK 207 (456)
T ss_pred cccChhhhHHHHHHHHHHHHHHhC--CCHHHHHHHHcCCHhHHHH
Confidence 777776665 99999999996 5999999999999999974
No 23
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=99.75 E-value=2.6e-18 Score=158.58 Aligned_cols=124 Identities=13% Similarity=0.068 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCC
Q 014423 59 RAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFR 138 (425)
Q Consensus 59 ~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~d 138 (425)
+..+.|+..++.+|+|||.||.||+.+||+ +|.+++.|+. ++.++||||||. .|+.++..++ +. ..+++.|
T Consensus 12 q~~a~C~~~AA~~Y~Ipp~LL~AIa~~ESg-~pgai~~N~N-GT~DvGlMQINS---~hlp~L~~~G---I~-~~~L~~d 82 (206)
T PRK13888 12 QERVVCSISAAVKYEVPANIVLAVAEKEGG-KPGQWVRNTN-GTHDVGPMQFNT---AYLGDLARYG---IT-ANDVAAA 82 (206)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHhCC-CCCCEEeCCC-CCEEeCCccccc---HhHHHHHHcC---CC-HHHhCCC
Confidence 567789999999999999999999999995 9999886654 457899999998 8998876553 33 1234456
Q ss_pred HHHHHHHHHHHHHHHHH-ccCCCCCHHHHHHhhcCCcccccccccchHHHHHHHHHh
Q 014423 139 PLVSIYFGAAYLKWLST-FQDKERTEEFVIRAYKGGTKKATHKSTLPYWKSYISVKE 194 (425)
Q Consensus 139 P~~NI~~Ga~yL~~l~~-~~~~~~~~~~alaAYNaG~g~v~~~~~~~~~~~y~~~k~ 194 (425)
||.||.+|||+|+..++ .+| ..|+ +||+||+.....+..++.++++.+.+...
T Consensus 83 pC~NV~vGAWILr~~i~~~~G--~~W~-AVG~YhS~Tp~~~~~Y~~kV~~~~~~w~~ 136 (206)
T PRK13888 83 GCYSFDLAAWRLRMHIRNDKG--DLWT-KAANYHSRTPQYNAVYRADLMRKASKWAD 136 (206)
T ss_pred CceeHHHHHHHHHHHHHHhhC--chHH-HHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 89999999999986554 566 3666 99999987766665555565555555433
No 24
>COG0741 MltE Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=1.1e-17 Score=162.71 Aligned_cols=122 Identities=30% Similarity=0.339 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHHH
Q 014423 286 IILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGAA 363 (425)
Q Consensus 286 ~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga~ 363 (425)
.++...+..++|++.++.+|+++||. +.++|.+|+.||||+||.|+.+++...+.. . +..+++||+.||.+|++
T Consensus 141 ~~~~~~~~~~~v~~~~~~ai~~~ES~~~~~a~s~~ga~glmQ~~~~ta~~~~~~~~~~-~---~~~~l~dp~~Ni~~G~~ 216 (296)
T COG0741 141 PLILSAARQYGVDPDLVYAIIRQESAFNPAAVSRAGALGLMQGMPATARRLAYRLGLG-K---SAADLFDPAQNIKYGAA 216 (296)
T ss_pred cHHHHHhhhcCCCHHHHHHHHHHHhcCCCcCccCCCcccchhcCchhHHHHHHHcCCC-C---chhhhcCHHHHHHHHHH
Confidence 46777899999999999999999999 999999999999999999999999988865 3 37899999999999999
Q ss_pred HHHHHH--HhcCCCCchhHHhHHhccCcccccc--------------------cccchHHHHHHHHHHhhhhh
Q 014423 364 YLSYLS--EYEGKERTPQFVVQAYLEGPKNVNL--------------------QETGPSWLKFEQALGNYEAT 414 (425)
Q Consensus 364 YL~~l~--~~~g~~~~~~~alaAYNaGp~~v~~--------------------~~~~~y~~k~~~~~~~y~~~ 414 (425)
||++++ ++.|+. ..++++||+||+++.+ .++..|..++......|...
T Consensus 217 yL~~~~~~~~~~~~---~~a~a~Ynag~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~y~~~v~~~~~~~~~~ 286 (296)
T COG0741 217 YLKSLLPRRFGGNT---PLALAAYNAGPGRVARWLADLDAKRSVRARVELNPRAETRKYVKKVGESLAAYAAL 286 (296)
T ss_pred HHHHHHhcccCCch---HHHHHHhhcCcchhhhHHHhcCCCccHHHHHHhCCCCcchHHHHHHHhhHHHHHHH
Confidence 999866 455554 6899999999974332 34555777777776666654
No 25
>COG0741 MltE Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.8e-17 Score=161.22 Aligned_cols=104 Identities=29% Similarity=0.372 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHH
Q 014423 63 YIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVS 142 (425)
Q Consensus 63 ~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~N 142 (425)
.++...+.+++|++.++++|+.+||+|+|.+ .|..|++||||+||.|+.+++...+.+ . ..++++||+.|
T Consensus 141 ~~~~~~~~~~~v~~~~~~ai~~~ES~~~~~a-----~s~~ga~glmQ~~~~ta~~~~~~~~~~-~----~~~~l~dp~~N 210 (296)
T COG0741 141 PLILSAARQYGVDPDLVYAIIRQESAFNPAA-----VSRAGALGLMQGMPATARRLAYRLGLG-K----SAADLFDPAQN 210 (296)
T ss_pred cHHHHHhhhcCCCHHHHHHHHHHHhcCCCcC-----ccCCCcccchhcCchhHHHHHHHcCCC-C----chhhhcCHHHH
Confidence 3555667899999999999999999999999 899999999999999999999888765 2 23489999999
Q ss_pred HHHHHHHHHHHHH-ccCCCCCHHHHHHhhcCCccccc
Q 014423 143 IYFGAAYLKWLST-FQDKERTEEFVIRAYKGGTKKAT 178 (425)
Q Consensus 143 I~~Ga~yL~~l~~-~~~~~~~~~~alaAYNaG~g~v~ 178 (425)
|.+|++||+.+.. +++ ++...++++||+|++.+.
T Consensus 211 i~~G~~yL~~~~~~~~~--~~~~~a~a~Ynag~~~~~ 245 (296)
T COG0741 211 IKYGAAYLKSLLPRRFG--GNTPLALAAYNAGPGRVA 245 (296)
T ss_pred HHHHHHHHHHHHhcccC--CchHHHHHHhhcCcchhh
Confidence 9999999998666 776 455689999999998543
No 26
>cd00254 LT_GEWL Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Probab=99.70 E-value=3.3e-17 Score=137.72 Aligned_cols=89 Identities=31% Similarity=0.296 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCcCCcccCCC-CCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 014423 76 PDMICAIAELESDRQLLAVRYDKK-SKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLKWLS 154 (425)
Q Consensus 76 p~Ll~Aia~~ES~f~p~a~~~~~~-S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~~l~ 154 (425)
|.+|.|||.+||+|+|.+ . +..+++|||||+|.|...+....+. ..++++||+.||.+|++||+.+.
T Consensus 1 p~~l~ai~~~ES~~~~~a-----~~~~~~a~GlmQi~~~~~~~~~~~~~~-------~~~~~~dp~~ni~~~~~~l~~~~ 68 (113)
T cd00254 1 PALLLAIIRQESGFNPNA-----VNSGAGAVGLMQFMPSTARAYGVDGGD-------GADDLFDPEDNIRAGARYLKELY 68 (113)
T ss_pred CHHHHHHHHHHCCCCCCC-----ccCCCCCeeeeeeCchHHHHHHHhcCC-------ChhhcCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999 6 7889999999999998877655331 12479999999999999999999
Q ss_pred Hc-cCCCCCHHHHHHhhcCCcccccc
Q 014423 155 TF-QDKERTEEFVIRAYKGGTKKATH 179 (425)
Q Consensus 155 ~~-~~~~~~~~~alaAYNaG~g~v~~ 179 (425)
+. . +++..++++||+|++.+..
T Consensus 69 ~~~~---~~~~~a~~~Yn~g~~~~~~ 91 (113)
T cd00254 69 KRFG---GDLWLALAAYNAGPGRVRR 91 (113)
T ss_pred HHcC---CcHHHHHHHHhcCHhHHHH
Confidence 87 5 4899999999999998865
No 27
>cd00254 LT_GEWL Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Probab=99.67 E-value=9.8e-17 Score=134.83 Aligned_cols=100 Identities=31% Similarity=0.245 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcC--CCCC-CCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-cCC
Q 014423 299 PTYLCAIAEMVSM--RFVN-GVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGAAYLSYLSEY-EGK 374 (425)
Q Consensus 299 p~Ll~Ai~~~ES~--~~a~-s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga~YL~~l~~~-~g~ 374 (425)
|.+|.||+.+||+ +++. +..++.|||||+|.|...+....+ . +.++++||+.||.+|++||+.+... .++
T Consensus 1 p~~l~ai~~~ES~~~~~a~~~~~~a~GlmQi~~~~~~~~~~~~~---~---~~~~~~dp~~ni~~~~~~l~~~~~~~~~~ 74 (113)
T cd00254 1 PALLLAIIRQESGFNPNAVNSGAGAVGLMQFMPSTARAYGVDGG---D---GADDLFDPEDNIRAGARYLKELYKRFGGD 74 (113)
T ss_pred CHHHHHHHHHHCCCCCCCccCCCCCeeeeeeCchHHHHHHHhcC---C---ChhhcCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 5789999999999 8898 899999999999999988776554 1 2578999999999999999999955 778
Q ss_pred CCchhHHhHHhccCcccccc-------cccchHHHHHHHH
Q 014423 375 ERTPQFVVQAYLEGPKNVNL-------QETGPSWLKFEQA 407 (425)
Q Consensus 375 ~~~~~~alaAYNaGp~~v~~-------~~~~~y~~k~~~~ 407 (425)
+ ..++++||+|++.+.+ ..+..|..++++.
T Consensus 75 ~---~~a~~~Yn~g~~~~~~~~~~~~~~~~~~Y~~~v~~~ 111 (113)
T cd00254 75 L---WLALAAYNAGPGRVRRALAYIPPKETRNYVAKVLAL 111 (113)
T ss_pred H---HHHHHHHhcCHhHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 7 9999999999999976 4566788887654
No 28
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=4.1e-16 Score=155.03 Aligned_cols=116 Identities=23% Similarity=0.233 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHH
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGA 362 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga 362 (425)
+.+|++|+.+ +||.||+||++|||. |.|.|+.|..|||||.+.||+ .+| +.|..||+.||.+|+
T Consensus 272 ~pLfekya~e--~dWrlLAAiaYQESHwnP~AtsptGvrGlMmLT~~TAq----s~g--------v~dr~DpeqsI~ggs 337 (473)
T COG4623 272 RPLFEKYAGE--LDWRLLAAIAYQESHWNPQATSPTGVRGLMMLTKATAQ----SMG--------VSDRTDPEQSISGGS 337 (473)
T ss_pred hHHHHHhhcc--ccHHHHHHHHHHHhccCCCCCCCccchhhhhhhHHHHH----hcC--------CCccCChhhhhhHHH
Confidence 5689999886 679999999999999 999999999999999999998 455 569999999999999
Q ss_pred HHHHHHH-HhcCCCCc---hhHHhHHhccCcccccc--------cccchHHHHHHHHHHhhhhh
Q 014423 363 AYLSYLS-EYEGKERT---PQFVVQAYLEGPKNVNL--------QETGPSWLKFEQALGNYEAT 414 (425)
Q Consensus 363 ~YL~~l~-~~~g~~~~---~~~alaAYNaGp~~v~~--------~~~~~y~~k~~~~~~~y~~~ 414 (425)
.||.+++ ++...++. ++|||||||.|++++.. ...-+-|.-+.+.++.-+..
T Consensus 338 ~YL~~i~~q~peSi~E~ERiwFALAAYNmG~~hm~daR~lt~~~g~nPd~W~dvk~rLp~l~qk 401 (473)
T COG4623 338 RYLQDIMSQVPESIPEDERIWFALAAYNMGYGHMQDARRLTKKTGGNPDSWFDVKKRLPLLAQK 401 (473)
T ss_pred HHHHHHHHhCcccCCchhHHHHHHHHhccCHHHHHHHHHHHHhcCCCchhHHHHHHHhHHHHhc
Confidence 9999999 87766542 68999999999999865 22333577666666654443
No 29
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=2.1e-15 Score=150.02 Aligned_cols=109 Identities=28% Similarity=0.274 Sum_probs=87.9
Q ss_pred hcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHH
Q 014423 71 RSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYL 150 (425)
Q Consensus 71 ~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL 150 (425)
.-.+|+.||+||+++||.|||.| .|++|..|||||++.||+.+ |. . +..||+.||.+|++||
T Consensus 279 a~e~dWrlLAAiaYQESHwnP~A-----tsptGvrGlMmLT~~TAqs~----gv-----~----dr~DpeqsI~ggs~YL 340 (473)
T COG4623 279 AGELDWRLLAAIAYQESHWNPQA-----TSPTGVRGLMMLTKATAQSM----GV-----S----DRTDPEQSISGGSRYL 340 (473)
T ss_pred hccccHHHHHHHHHHHhccCCCC-----CCCccchhhhhhhHHHHHhc----CC-----C----ccCChhhhhhHHHHHH
Confidence 34699999999999999999999 99999999999999999754 44 3 6889999999999999
Q ss_pred HHHHHccCCC----CCHHHHHHhhcCCcccccccccch-----HHHHHHHHHhcCC
Q 014423 151 KWLSTFQDKE----RTEEFVIRAYKGGTKKATHKSTLP-----YWKSYISVKESLP 197 (425)
Q Consensus 151 ~~l~~~~~~~----~~~~~alaAYNaG~g~v~~~~~~~-----~~~~y~~~k~~~~ 197 (425)
.++++++... ...-|||+|||.|++++..++++. --++|.-+|+.+|
T Consensus 341 ~~i~~q~peSi~E~ERiwFALAAYNmG~~hm~daR~lt~~~g~nPd~W~dvk~rLp 396 (473)
T COG4623 341 QDIMSQVPESIPEDERIWFALAAYNMGYGHMQDARRLTKKTGGNPDSWFDVKKRLP 396 (473)
T ss_pred HHHHHhCcccCCchhHHHHHHHHhccCHHHHHHHHHHHHhcCCCchhHHHHHHHhH
Confidence 9999987532 113389999999999998665542 2445555555553
No 30
>PRK13864 type IV secretion system lytic transglycosylase VirB1; Provisional
Probab=99.59 E-value=4.6e-15 Score=141.70 Aligned_cols=94 Identities=29% Similarity=0.322 Sum_probs=74.6
Q ss_pred hcCCCHHHHHHHHHHHcCCCcCCcccCCCC----------------------CCCCcccccCccccHHHHHHHhCCcccC
Q 014423 71 RSQIDPDMICAIAELESDRQLLAVRYDKKS----------------------KEAKVGLMQITHKNAVWLFSEMGYRLYD 128 (425)
Q Consensus 71 ~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S----------------------~~ga~GLMQI~p~Ta~~~~~~~g~~~~~ 128 (425)
...|+|.+|.||+.+||+|||.+++.|..+ +.-++||||||. .|+.+ +|+.
T Consensus 38 AP~V~P~tL~AIa~vESg~nP~AI~~N~~G~~l~~qs~~EAi~~a~~l~~~g~s~DvGLmQINs---~nl~~-lgls--- 110 (245)
T PRK13864 38 APSVAPSTLAAIAKVESRFDPLAVHDNTTGETLHWQNHAQATQSVRHRLEARHSLDVGLMQINS---KNFSV-LGLT--- 110 (245)
T ss_pred cCCCCHHHHHHHHHHhccCCCcceeecCCCCccCCCCHHHHHHHHHHHHhcCCceeeechhccH---HHHHH-hCCC---
Confidence 468999999999999999999998865432 246899999997 77754 3432
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHccCCCC----CHHHHHHhhcCCcc
Q 014423 129 VEQNPDLLFRPLVSIYFGAAYLKWLSTFQDKER----TEEFVIRAYKGGTK 175 (425)
Q Consensus 129 ~~~~~~~l~dP~~NI~~Ga~yL~~l~~~~~~~~----~~~~alaAYNaG~g 175 (425)
.+++||||.||++|+++|+.++.+...++ .+..||++||+|..
T Consensus 111 ----~e~lfDPC~NL~agA~IL~~cy~~g~~~~~~q~aL~~ALs~YnSGn~ 157 (245)
T PRK13864 111 ----PDGALQPCTSLSAAANLLGSRYAGGDTADEKQLALRRAISAYNTGDF 157 (245)
T ss_pred ----HHHhcChhhhHHHHHHHHHHHHHhcCCcccchHHHHHHHhhhcCCCC
Confidence 34799999999999999999887543221 35689999999964
No 31
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=99.49 E-value=3.2e-14 Score=131.64 Aligned_cols=103 Identities=15% Similarity=-0.025 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC-CCCCCCC----CCccccccChhhHHHHHHHcCCCcCCCCCCCCCC-CHHHHHHH
Q 014423 287 ILSKYFSTKGVKPTYLCAIAEMVSM-RFVNGVS----PRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLT-KPFVSMYF 360 (425)
Q Consensus 287 ~i~~~a~~~~vdp~Ll~Ai~~~ES~-~~a~s~~----ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~-dP~~NI~~ 360 (425)
-|.+.+..|+|||.||.||+.+||+ +.+++.+ -.+|||||+-.-...|+ ++|+. .++|+ |||.||++
T Consensus 17 C~~~AA~~Y~Ipp~LL~AIa~~ESg~pgai~~N~NGT~DvGlMQINS~hlp~L~-~~GI~------~~~L~~dpC~NV~v 89 (206)
T PRK13888 17 CSISAAVKYEVPANIVLAVAEKEGGKPGQWVRNTNGTHDVGPMQFNTAYLGDLA-RYGIT------ANDVAAAGCYSFDL 89 (206)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCCCEEeCCCCCEEeCCcccccHhHHHHH-HcCCC------HHHhCCCCceeHHH
Confidence 6889999999999999999999999 6665543 35799999954333332 34432 44565 68999999
Q ss_pred HHHHHHHHH-HhcCCCCchhHHhHHhccCcccccccccch
Q 014423 361 GAAYLSYLS-EYEGKERTPQFVVQAYLEGPKNVNLQETGP 399 (425)
Q Consensus 361 Ga~YL~~l~-~~~g~~~~~~~alaAYNaGp~~v~~~~~~~ 399 (425)
|+++|+..+ +..|+. +.++++||+.....+..+...
T Consensus 90 GAWILr~~i~~~~G~~---W~AVG~YhS~Tp~~~~~Y~~k 126 (206)
T PRK13888 90 AAWRLRMHIRNDKGDL---WTKAANYHSRTPQYNAVYRAD 126 (206)
T ss_pred HHHHHHHHHHHhhCch---HHHHHHhcCCChHHHHHHHHH
Confidence 999998888 467888 999999997444444333333
No 32
>PRK13864 type IV secretion system lytic transglycosylase VirB1; Provisional
Probab=99.23 E-value=3.1e-11 Score=115.52 Aligned_cols=110 Identities=22% Similarity=0.162 Sum_probs=81.2
Q ss_pred HHHHHHH--cCCCHHHHHHHHHHhcC--CCCCCCC--C-------------------------CccccccChhhHHHHHH
Q 014423 288 LSKYFST--KGVKPTYLCAIAEMVSM--RFVNGVS--P-------------------------RIGLMGIDYSTAFWIYM 336 (425)
Q Consensus 288 i~~~a~~--~~vdp~Ll~Ai~~~ES~--~~a~s~~--g-------------------------a~GLMQi~p~Ta~~~~~ 336 (425)
|...+.+ ..|+|.+|.||+.+||+ |++++.+ | .+|||||+. .|+.
T Consensus 30 f~~LA~~CAP~V~P~tL~AIa~vESg~nP~AI~~N~~G~~l~~qs~~EAi~~a~~l~~~g~s~DvGLmQINs---~nl~- 105 (245)
T PRK13864 30 FNQLARECAPSVAPSTLAAIAKVESRFDPLAVHDNTTGETLHWQNHAQATQSVRHRLEARHSLDVGLMQINS---KNFS- 105 (245)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhccCCCcceeecCCCCccCCCCHHHHHHHHHHHHhcCCceeeechhccH---HHHH-
Confidence 4445555 36999999999999999 8887533 2 359999994 4443
Q ss_pred HcCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC----chhHHhHHhccCcccccccccchHHHHHHHHHH
Q 014423 337 ELGYRAYKVDSADDLTKPFVSMYFGAAYLSYLSEYEGKER----TPQFVVQAYLEGPKNVNLQETGPSWLKFEQALG 409 (425)
Q Consensus 337 ~~g~~~~~~~s~~~l~dP~~NI~~Ga~YL~~l~~~~g~~~----~~~~alaAYNaGp~~v~~~~~~~y~~k~~~~~~ 409 (425)
.+|+. .+++||||.||.+|+++|+.+++....+. ....||.+||.|-. .......|+.|+.....
T Consensus 106 ~lgls------~e~lfDPC~NL~agA~IL~~cy~~g~~~~~~q~aL~~ALs~YnSGn~--~~Gf~~~YV~KV~~aa~ 174 (245)
T PRK13864 106 VLGLT------PDGALQPCTSLSAAANLLGSRYAGGDTADEKQLALRRAISAYNTGDF--TRGFANGYVRKVETAAQ 174 (245)
T ss_pred HhCCC------HHHhcChhhhHHHHHHHHHHHHHhcCCcccchHHHHHHHhhhcCCCC--CCcchhHHHHHHHHHHH
Confidence 34543 67899999999999999999997443221 24689999998853 34455689999888663
No 33
>PRK13843 conjugal transfer protein TraH; Provisional
Probab=98.94 E-value=1.1e-09 Score=101.05 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=66.7
Q ss_pred cCCCHHHHHHHHHHHcCCCcCCcccCCCCC------------------------CCCcccccCccccHHHHHHHhCCccc
Q 014423 72 SQIDPDMICAIAELESDRQLLAVRYDKKSK------------------------EAKVGLMQITHKNAVWLFSEMGYRLY 127 (425)
Q Consensus 72 ~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~------------------------~ga~GLMQI~p~Ta~~~~~~~g~~~~ 127 (425)
-.|.|..+.+|+.+||+|||.|++....+. .-.+||||+.- |++..
T Consensus 13 Psv~Patv~~ivrvESs~nPyAI~V~~ggr~~L~~~P~s~~EA~~~vr~l~~~g~v~VGl~Qf~a----------Glgv~ 82 (207)
T PRK13843 13 PSLKPAIVEQFIEAAGSPDPLAVTVRSGGRLVLVPKPKTPDEAMALIRQYVGQAVVRVGLTQYPA----------GVGVV 82 (207)
T ss_pred CCcCHHHHHHHHHHhcCCCCeeEEEeeCCeeeecCCCCCHHHHHHHHHHHHhcCceeeeeEEecc----------cccee
Confidence 579999999999999999999988632111 12678888662 11110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHH----ccCCCCC-------HHHHHHhhcCCcc
Q 014423 128 DVEQNPDLLFRPLVSIYFGAAYLKWLST----FQDKERT-------EEFVIRAYKGGTK 175 (425)
Q Consensus 128 ~~~~~~~~l~dP~~NI~~Ga~yL~~l~~----~~~~~~~-------~~~alaAYNaG~g 175 (425)
+......++||||.||++|+.+|..+++ .+++..+ +..||.||++|.-
T Consensus 83 n~~~l~~dlfDpC~NLr~Gt~if~~~yriv~~~yg~~~~~~v~~qaL~~AlscY~SGnF 141 (207)
T PRK13843 83 DAGQLKPDLVDACENLRMGTALFAKVYRIVTKWYGNPTSKDVLPQVFDDAIYAWKTGYF 141 (207)
T ss_pred ehhhccHHHHhhhhhhHHHHHHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHhhccCc
Confidence 0011124799999999999999984443 4665555 7899999999964
No 34
>PF13702 Lysozyme_like: Lysozyme-like
Probab=98.64 E-value=1.2e-07 Score=85.73 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCCHH--HHHHHHHHhcCCCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHH
Q 014423 285 EIILSKYFSTKGVKPT--YLCAIAEMVSMRFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGA 362 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~--Ll~Ai~~~ES~~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga 362 (425)
+.+|+++++++||+.. ||+|||.|||+- ...-+||--.+. +.+ +..+.||+.+|+.|+
T Consensus 9 ~~~V~k~a~e~gi~~yv~liLAim~~ESgG------~~~DvMQSSES~--------~~~------pn~I~dpe~SI~~Gv 68 (160)
T PF13702_consen 9 RPMVEKYAKEYGIPEYVNLILAIMMQESGG------KGNDVMQSSESL--------GNP------PNSITDPEESIKQGV 68 (160)
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHhcCC------CCCCccccCCCC--------CCC------CCccCCHHHHHHHHH
Confidence 5689999999999985 999999999951 124588865332 222 567889999999999
Q ss_pred HHHHHHH-Hhc----CCCCchhHHhHHhccCcccccc
Q 014423 363 AYLSYLS-EYE----GKERTPQFVVQAYLEGPKNVNL 394 (425)
Q Consensus 363 ~YL~~l~-~~~----g~~~~~~~alaAYNaGp~~v~~ 394 (425)
.||+.++ +-. +++ +.||.|||-|+|-+.-
T Consensus 69 ~~fa~~l~~a~~~~~~di---~~alQaYNfG~gyIdy 102 (160)
T PF13702_consen 69 KYFADNLKKAKEKGPDDI---KTALQAYNFGSGYIDY 102 (160)
T ss_pred HHHHHHHHHHHhcCcccH---HHHhhhhcCCccHHHH
Confidence 9999999 444 354 9999999999997753
No 35
>PF13702 Lysozyme_like: Lysozyme-like
Probab=98.44 E-value=1.1e-06 Score=79.51 Aligned_cols=95 Identities=21% Similarity=0.161 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCC
Q 014423 56 TEMRAVAYIVVRRHFRSQIDPD--MICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNP 133 (425)
Q Consensus 56 ~~~~ava~~i~~~~~~~~vdp~--Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~ 133 (425)
.+..+...+|.+.+.+++|+.. ||+|||.+||+.+- .-+||--.+ .+ ..+
T Consensus 3 ~~V~~y~~~V~k~a~e~gi~~yv~liLAim~~ESgG~~-------------~DvMQSSES--------~~-------~~p 54 (160)
T PF13702_consen 3 EEVLQYRPMVEKYAKEYGIPEYVNLILAIMMQESGGKG-------------NDVMQSSES--------LG-------NPP 54 (160)
T ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHhcCCCC-------------CCccccCCC--------CC-------CCC
Confidence 3567788899999999999995 99999999999732 247886641 11 124
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHccC--CCCCHHHHHHhhcCCccccc
Q 014423 134 DLLFRPLVSIYFGAAYLKWLSTFQD--KERTEEFVIRAYKGGTKKAT 178 (425)
Q Consensus 134 ~~l~dP~~NI~~Ga~yL~~l~~~~~--~~~~~~~alaAYNaG~g~v~ 178 (425)
+.+.||+.+|+.|+.||+.+++..+ +.+++..||-|||-|+|-..
T Consensus 55 n~I~dpe~SI~~Gv~~fa~~l~~a~~~~~~di~~alQaYNfG~gyId 101 (160)
T PF13702_consen 55 NSITDPEESIKQGVKYFADNLKKAKEKGPDDIKTALQAYNFGSGYID 101 (160)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHhcCcccHHHHhhhhcCCccHHH
Confidence 5788999999999999998887543 11478899999999998765
No 36
>TIGR02282 MltB lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by Pfam model pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes.
Probab=98.04 E-value=1.8e-05 Score=78.40 Aligned_cols=80 Identities=20% Similarity=0.117 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCC---------------------------------------------CCC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFV---------------------------------------------NGV 317 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a---------------------------------------------~s~ 317 (425)
..++.+..++||||+.+|.||.-+||. .+. -|.
T Consensus 69 ~~~l~~~e~~yGVp~~ii~AiwGvET~yG~~~G~~~v~~aLaTLA~~~~rR~~ff~~EL~aaL~i~~~~~~~~~~l~GS~ 148 (290)
T TIGR02282 69 EDALNRAEQRYGVPPEIIVAIIGVETNYGRNMGKYRVLDALTTLAFDYPRRATFFRGELGQFLLLAREEQLDPLTLKGSY 148 (290)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhccccccCCchHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcCCChHhcCCCc
Confidence 357889999999999999999999998 211 167
Q ss_pred CCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCC-HHHHHHHHHHHHHHHH
Q 014423 318 SPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTK-PFVSMYFGAAYLSYLS 369 (425)
Q Consensus 318 ~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~d-P~~NI~~Ga~YL~~l~ 369 (425)
+||.|.||+||+|....+.+.. -+..-|+++ |.++|.-.+.||+..-
T Consensus 149 aGAmG~~QFmPss~~~yavD~d-----gDG~~Di~~s~~Dai~S~anyl~~~G 196 (290)
T TIGR02282 149 AGAMGYPQFMPSSYRQYAVDFD-----GDGHIDLWNSPDDAIGSVANYFHAHG 196 (290)
T ss_pred ccccCCcccCHHHHHHhCcCCC-----CCCCcCCCCCHHHHHHHHHHHHHHhC
Confidence 8999999999999764433322 122457875 9999999999998743
No 37
>TIGR02282 MltB lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by Pfam model pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes.
Probab=98.03 E-value=2.8e-05 Score=76.97 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCccc----------------------------------------C
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRY----------------------------------------D 97 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~----------------------------------------~ 97 (425)
+++.++.+.+...+||||+.+|.||.-+||+|--..-++ .
T Consensus 65 ~~~~~~~l~~~e~~yGVp~~ii~AiwGvET~yG~~~G~~~v~~aLaTLA~~~~rR~~ff~~EL~aaL~i~~~~~~~~~~l 144 (290)
T TIGR02282 65 WKQHEDALNRAEQRYGVPPEIIVAIIGVETNYGRNMGKYRVLDALTTLAFDYPRRATFFRGELGQFLLLAREEQLDPLTL 144 (290)
T ss_pred HHHhHHHHHHHHHHHCcCHHHHHHHHHHHhccccccCCchHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcCCChHhc
Confidence 456677788888899999999999999999997532111 1
Q ss_pred CCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCC-HHHHHHHHHHHHHH
Q 014423 98 KKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFR-PLVSIYFGAAYLKW 152 (425)
Q Consensus 98 ~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~d-P~~NI~~Ga~yL~~ 152 (425)
.-|..||+|.||+||+|....+. .+.+ +... |+++ |.++|.-.+.||+.
T Consensus 145 ~GS~aGAmG~~QFmPss~~~yav--D~dg---DG~~-Di~~s~~Dai~S~anyl~~ 194 (290)
T TIGR02282 145 KGSYAGAMGYPQFMPSSYRQYAV--DFDG---DGHI-DLWNSPDDAIGSVANYFHA 194 (290)
T ss_pred CCCcccccCCcccCHHHHHHhCc--CCCC---CCCc-CCCCCHHHHHHHHHHHHHH
Confidence 24789999999999987654322 2111 2212 6776 99999999999984
No 38
>TIGR02283 MltB_2 lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282.
Probab=97.94 E-value=3.4e-05 Score=76.84 Aligned_cols=80 Identities=19% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCC--------------------------------------------CCCC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFV--------------------------------------------NGVS 318 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a--------------------------------------------~s~~ 318 (425)
..++.+..++||||+.+|.||.-+||+ .+. -|.+
T Consensus 75 ~~~L~~~e~~yGVp~~ii~Ai~gvET~yG~~~G~~~vl~aLaTLA~~~rR~~fF~~EL~a~L~~~~~~~~~~~~~~gS~a 154 (300)
T TIGR02283 75 AALLARIEKRYGVPAEILLAIWGMESDFGAYQGKFDVIRSLATLAYDGRRKDYFRTELIAALKILQRGDLTRAAMKGSWA 154 (300)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHhhcccccCCccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCHHhcCCCcc
Confidence 357889999999999999999999998 221 1567
Q ss_pred CCccccccChhhHHHHHHHcCCCcCCCCCCCCCC-CHHHHHHHHHHHHHHHH
Q 014423 319 PRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLT-KPFVSMYFGAAYLSYLS 369 (425)
Q Consensus 319 ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~-dP~~NI~~Ga~YL~~l~ 369 (425)
||.|.||+||+|-...+.+..- +..-|++ +|.+.|--.+.||+..-
T Consensus 155 GA~G~~QFmPss~~~yavD~dg-----DG~~Diw~~~~Da~~S~AnyL~~~G 201 (300)
T TIGR02283 155 GAMGQTQFLPSSYLNYAVDFDG-----DGRRDIWNSVPDALASTANYLVNGG 201 (300)
T ss_pred ccCCCCccCHHHHHHhCcCCCC-----CCCcCCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999997644433321 2245775 69999999999998754
No 39
>PF13406 SLT_2: Transglycosylase SLT domain; PDB: 1LTM_A 1D0L_A 1QDT_A 1D0K_A 1D0M_A 1QDR_A 1QUT_A 1QUS_A 4ANR_A.
Probab=97.86 E-value=5.6e-05 Score=74.03 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCccc---------------------------------------CC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRY---------------------------------------DK 98 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~---------------------------------------~~ 98 (425)
+++....+.+...+|||||.+|.||.-+||+|--..-++ .+
T Consensus 70 ~~~~~~~l~~~e~~yGVp~~iivAi~GvET~yG~~~G~~~vl~aLaTLA~~~rR~~~f~~EL~a~L~~~~~~~~~~~~l~ 149 (262)
T PF13406_consen 70 LKEHRALLDRAEKRYGVPPEIIVAIWGVETNYGRYTGNYPVLDALATLAFDYRRADFFRKELIAALKIADRGGIDPETLK 149 (262)
T ss_dssp HHHTHHHHHHHHHHH---HHHHHHHHHHHHTTTTS--SEEHHHHHHHHHHC-GGHHHHHHHHHHHHHHHHHCT--CCC-E
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccCCcchHHHHhhhcccccHHHHHHHHHHHHHHHHHcCCCChhhcC
Confidence 455666777778899999999999999999997532111 13
Q ss_pred CCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCC-HHHHHHHHHHHHHH
Q 014423 99 KSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFR-PLVSIYFGAAYLKW 152 (425)
Q Consensus 99 ~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~d-P~~NI~~Ga~yL~~ 152 (425)
-|..||+|+||+||+|....+... .+ +... ||++ +.+.|--.|.||+.
T Consensus 150 GS~AGAmG~~QFmPSs~~~yavD~--dg---DG~~-Dl~~s~~DAiaS~ANyL~~ 198 (262)
T PF13406_consen 150 GSWAGAMGQPQFMPSSYLKYAVDG--DG---DGRI-DLWNSPADAIASIANYLKK 198 (262)
T ss_dssp E-TT--BTTTTB-HHHHHHH---T--TS---SS----TTT-HHHHHHHHHHHHHH
T ss_pred CCcccCcCCCCcCHHHHHHhCcCC--CC---CCCc-CCCCCHHHHHHHHHHHHHH
Confidence 488999999999998766543321 11 2222 5766 99999999999885
No 40
>PRK10760 murein hydrolase B; Provisional
Probab=97.86 E-value=3.8e-05 Score=77.94 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC------CC---------C--------------------------------CCCC
Q 014423 286 IILSKYFSTKGVKPTYLCAIAEMVSM------RF---------V--------------------------------NGVS 318 (425)
Q Consensus 286 ~~i~~~a~~~~vdp~Ll~Ai~~~ES~------~~---------a--------------------------------~s~~ 318 (425)
..+.+..++|||||.+|.||.-+||. .+ + -|.+
T Consensus 137 ~~l~~~e~~yGVp~~iivAi~GvET~yG~~~G~~~vl~aLaTLA~~~prR~~fF~~EL~~~L~~~~~~~~~~~~lkGS~A 216 (359)
T PRK10760 137 DALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEGDDPLNLRGSFA 216 (359)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHhhcccccccCCchHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcCCChHhcCCCcc
Confidence 47888999999999999999999998 11 1 1678
Q ss_pred CCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 014423 319 PRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGAAYLSYLS 369 (425)
Q Consensus 319 ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga~YL~~l~ 369 (425)
||.|.+|+||++-...+-+.+ -+..-||++|.+.|--.+.||+..=
T Consensus 217 GAmG~~QFmPss~~~yaVD~D-----gDG~~Dl~~~~DaiaS~AnyL~~~G 262 (359)
T PRK10760 217 GAMGYGQFMPSSFKQYAVDFN-----GDGHINLWDPVDAIGSVANYFKAHG 262 (359)
T ss_pred cccCCcccChHHHHHhCcCCC-----CCCCCCCCCcHHHHHHHHHHHHHcC
Confidence 999999999999775443332 2224578999999999999997654
No 41
>PF13406 SLT_2: Transglycosylase SLT domain; PDB: 1LTM_A 1D0L_A 1QDT_A 1D0K_A 1D0M_A 1QDR_A 1QUT_A 1QUS_A 4ANR_A.
Probab=97.83 E-value=9.3e-05 Score=72.52 Aligned_cols=80 Identities=19% Similarity=0.123 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC--CCC--------------------------------------------CCCC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM--RFV--------------------------------------------NGVS 318 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~~a--------------------------------------------~s~~ 318 (425)
...+.+..++|||||.+|.||.-+||. ... -|.+
T Consensus 74 ~~~l~~~e~~yGVp~~iivAi~GvET~yG~~~G~~~vl~aLaTLA~~~rR~~~f~~EL~a~L~~~~~~~~~~~~l~GS~A 153 (262)
T PF13406_consen 74 RALLDRAEKRYGVPPEIIVAIWGVETNYGRYTGNYPVLDALATLAFDYRRADFFRKELIAALKIADRGGIDPETLKGSWA 153 (262)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHTTTTS--SEEHHHHHHHHHHC-GGHHHHHHHHHHHHHHHHHCT--CCC-EE-TT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhccccccCCcchHHHHhhhcccccHHHHHHHHHHHHHHHHHcCCCChhhcCCCcc
Confidence 358899999999999999999999997 111 0445
Q ss_pred CCccccccChhhHHHHHHHcCCCcCCCCCCCCCCC-HHHHHHHHHHHHHHHH
Q 014423 319 PRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTK-PFVSMYFGAAYLSYLS 369 (425)
Q Consensus 319 ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~d-P~~NI~~Ga~YL~~l~ 369 (425)
||.|+||+||++....+.+..-.+ .-||++ +.+.|--.|.||+..=
T Consensus 154 GAmG~~QFmPSs~~~yavD~dgDG-----~~Dl~~s~~DAiaS~ANyL~~~G 200 (262)
T PF13406_consen 154 GAMGQPQFMPSSYLKYAVDGDGDG-----RIDLWNSPADAIASIANYLKKHG 200 (262)
T ss_dssp --BTTTTB-HHHHHHH---TTSSS--------TTT-HHHHHHHHHHHHHHTT
T ss_pred cCcCCCCcCHHHHHHhCcCCCCCC-----CcCCCCCHHHHHHHHHHHHHHcC
Confidence 889999999999876655444322 457876 9999999999999864
No 42
>PRK13843 conjugal transfer protein TraH; Provisional
Probab=97.81 E-value=3.5e-05 Score=71.57 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=59.5
Q ss_pred cCCCHHHHHHHHHHhcC--CCCCCCCC-----------------------------CccccccChhhHHHHHHHcCCC-c
Q 014423 295 KGVKPTYLCAIAEMVSM--RFVNGVSP-----------------------------RIGLMGIDYSTAFWIYMELGYR-A 342 (425)
Q Consensus 295 ~~vdp~Ll~Ai~~~ES~--~~a~s~~g-----------------------------a~GLMQi~p~Ta~~~~~~~g~~-~ 342 (425)
-.|.|..+.+|+++||+ |+++..+. .+||||+.-.- |.. .
T Consensus 13 Psv~Patv~~ivrvESs~nPyAI~V~~ggr~~L~~~P~s~~EA~~~vr~l~~~g~v~VGl~Qf~aGl--------gv~n~ 84 (207)
T PRK13843 13 PSLKPAIVEQFIEAAGSPDPLAVTVRSGGRLVLVPKPKTPDEAMALIRQYVGQAVVRVGLTQYPAGV--------GVVDA 84 (207)
T ss_pred CCcCHHHHHHHHHHhcCCCCeeEEEeeCCeeeecCCCCCHHHHHHHHHHHHhcCceeeeeEEecccc--------ceeeh
Confidence 36999999999999999 77765431 12677755211 111 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH----HhcCCCCc-------hhHHhHHhccCc
Q 014423 343 YKVDSADDLTKPFVSMYFGAAYLSYLS----EYEGKERT-------PQFVVQAYLEGP 389 (425)
Q Consensus 343 ~~~~s~~~l~dP~~NI~~Ga~YL~~l~----~~~g~~~~-------~~~alaAYNaGp 389 (425)
.++ ..++||||.||..|+..|..++ +++|+..+ ...||.||+.|-
T Consensus 85 ~~l--~~dlfDpC~NLr~Gt~if~~~yriv~~~yg~~~~~~v~~qaL~~AlscY~SGn 140 (207)
T PRK13843 85 GQL--KPDLVDACENLRMGTALFAKVYRIVTKWYGNPTSKDVLPQVFDDAIYAWKTGY 140 (207)
T ss_pred hhc--cHHHHhhhhhhHHHHHHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHhhccC
Confidence 111 3689999999999999998544 45666544 578999999874
No 43
>TIGR02283 MltB_2 lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282.
Probab=97.78 E-value=0.00014 Score=72.46 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCccc---------------------------------------CC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRY---------------------------------------DK 98 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~---------------------------------------~~ 98 (425)
++..+.++.+...+||||+.+|.||.-+||+|-...-++ ..
T Consensus 71 ~~~~~~~L~~~e~~yGVp~~ii~Ai~gvET~yG~~~G~~~vl~aLaTLA~~~rR~~fF~~EL~a~L~~~~~~~~~~~~~~ 150 (300)
T TIGR02283 71 LQRYAALLARIEKRYGVPAEILLAIWGMESDFGAYQGKFDVIRSLATLAYDGRRKDYFRTELIAALKILQRGDLTRAAMK 150 (300)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhhcccccCCccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCHHhcC
Confidence 456677888888899999999999999999997542211 12
Q ss_pred CCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCC-CHHHHHHHHHHHHHH
Q 014423 99 KSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLF-RPLVSIYFGAAYLKW 152 (425)
Q Consensus 99 ~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~-dP~~NI~~Ga~yL~~ 152 (425)
-|..||+|.||+||+|....+ .++.+ +... |++ +|.+.|--.|.||+.
T Consensus 151 gS~aGA~G~~QFmPss~~~ya--vD~dg---DG~~-Diw~~~~Da~~S~AnyL~~ 199 (300)
T TIGR02283 151 GSWAGAMGQTQFLPSSYLNYA--VDFDG---DGRR-DIWNSVPDALASTANYLVN 199 (300)
T ss_pred CCccccCCCCccCHHHHHHhC--cCCCC---CCCc-CCCCCHHHHHHHHHHHHHH
Confidence 377899999999998754332 22211 2222 565 699999999999985
No 44
>PRK10760 murein hydrolase B; Provisional
Probab=97.78 E-value=0.00011 Score=74.74 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCccc----------------------------------------C
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRY----------------------------------------D 97 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~----------------------------------------~ 97 (425)
.+..++.+.+...+|||||.+|.||+-+||+|--..-++ .
T Consensus 132 ~~~~~~~l~~~e~~yGVp~~iivAi~GvET~yG~~~G~~~vl~aLaTLA~~~prR~~fF~~EL~~~L~~~~~~~~~~~~l 211 (359)
T PRK10760 132 WNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEGDDPLNL 211 (359)
T ss_pred HHHhHHHHHHHHHHHCcCHHHHHHHHHhhcccccccCCchHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcCCChHhc
Confidence 356677888888899999999999999999997532221 1
Q ss_pred CCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 014423 98 KKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLKW 152 (425)
Q Consensus 98 ~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~~ 152 (425)
+-|..||+|.+|+||+|....+ .++.+ +.. -|+++|.+.|--.|.||+.
T Consensus 212 kGS~AGAmG~~QFmPss~~~ya--VD~Dg---DG~-~Dl~~~~DaiaS~AnyL~~ 260 (359)
T PRK10760 212 RGSFAGAMGYGQFMPSSFKQYA--VDFNG---DGH-INLWDPVDAIGSVANYFKA 260 (359)
T ss_pred CCCcccccCCcccChHHHHHhC--cCCCC---CCC-CCCCCcHHHHHHHHHHHHH
Confidence 2388999999999997765432 22211 221 2688999999888888864
No 45
>cd00119 LYZ1 C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have primarily bacteriolytic function; hydrolysis of peptidoglycan of prokaryotic cell walls and transglycosylation. LA is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.
Probab=97.74 E-value=2.3e-05 Score=68.01 Aligned_cols=51 Identities=25% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCcc
Q 014423 61 VAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITH 112 (425)
Q Consensus 61 va~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p 112 (425)
+|..+.+..+-.+++.....+||.+||+||+.|++.++. +..++|||||+.
T Consensus 8 La~~L~~~g~~~~~~l~~Wvcia~~ES~~nt~a~~~n~~-gs~dyGlfQINs 58 (123)
T cd00119 8 LAKELKRLGLYPGISLANWVCLAEHESGFNTQAVNNNND-GSTDYGLFQINS 58 (123)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHCCCccceecCCC-CCeeEeEEEecc
Confidence 444454444435688899999999999999999986553 456899999997
No 46
>smart00263 LYZ1 Alpha-lactalbumin / lysozyme C.
Probab=97.06 E-value=0.00044 Score=60.50 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCcc
Q 014423 73 QIDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITH 112 (425)
Q Consensus 73 ~vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p 112 (425)
+++..-...||.+||+|++.|++.++. +..++|||||+.
T Consensus 22 ~~~l~~WvCia~~ES~~~t~a~~~n~~-gs~dyGLfQINs 60 (127)
T smart00263 22 GISLANWVCLAFHESGYNTQATNYNNG-GSTDYGIFQINS 60 (127)
T ss_pred CcCHHHHHHHHHHHhcCCCcceecCCC-CCceeeEEEecc
Confidence 567788899999999999999886553 346799999997
No 47
>COG3953 SLT domain proteins [General function prediction only]
Probab=97.05 E-value=0.00041 Score=65.75 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCCcCCcc-----cCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 014423 79 ICAIAELESDRQLLAVR-----YDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLKW 152 (425)
Q Consensus 79 l~Aia~~ES~f~p~a~~-----~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~~ 152 (425)
+.-||..||+.+|.+++ .|.+.+..+.||||+.|+|+..- +..|++ ++++|-+|+.++..|...
T Consensus 18 l~~ia~~ESgg~~~aing~~wdiNai~g~psrGLmQ~i~stfna~-~~pg~~---------ni~Npidna~AAi~yi~~ 86 (235)
T COG3953 18 LMRIASRESGGNPNAINGILWDINAIPGDPSRGLMQTIPSTFNAN-KKPGQG---------NILNPIDNAAAAIRYIKT 86 (235)
T ss_pred hhhhhhhhcCCCcccccccccccccccCchhhhHHHHhHHHHhhh-cccCcc---------chhchhhHHHHHHHHHhh
Confidence 45688899999999977 46677778899999999998643 232332 799999999999887764
No 48
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=96.52 E-value=0.0052 Score=62.38 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCccc----------------------------------------CC
Q 014423 59 RAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAVRY----------------------------------------DK 98 (425)
Q Consensus 59 ~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~----------------------------------------~~ 98 (425)
.+.+..+.+...+|+||+.+|.||.-+||+|-..-.++ ..
T Consensus 110 ~~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~ 189 (343)
T COG2951 110 AQYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALK 189 (343)
T ss_pred HHHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCccccc
Confidence 35556667777899999999999999999995421111 23
Q ss_pred CCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCC-CHHHHHHHHHHHHHH
Q 014423 99 KSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLF-RPLVSIYFGAAYLKW 152 (425)
Q Consensus 99 ~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~-dP~~NI~~Ga~yL~~ 152 (425)
-|..||+|.||+||+|-... ..++.+ +... |++ ++.+.+--.|.||+.
T Consensus 190 GSwAGAmGq~QFmPss~~~Y--aVD~DG---DG~~-Diw~s~~DAlaS~ANyL~~ 238 (343)
T COG2951 190 GSWAGAMGQTQFMPSSYLKY--AVDGDG---DGHR-DIWNSVPDALASAANYLKS 238 (343)
T ss_pred chhhhccCCcccCcHHHHHh--hhcCCC---CCcc-CCccChHhHHHHHHHHHHH
Confidence 47788999999999765432 232222 1112 566 899999999999985
No 49
>COG3953 SLT domain proteins [General function prediction only]
Probab=96.25 E-value=0.0047 Score=58.68 Aligned_cols=57 Identities=19% Similarity=0.016 Sum_probs=43.1
Q ss_pred HHHHHhcC--CCCCC----------CCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 014423 304 AIAEMVSM--RFVNG----------VSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGAAYLSYLS 369 (425)
Q Consensus 304 Ai~~~ES~--~~a~s----------~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga~YL~~l~ 369 (425)
-||..||+ +.++. ..++.||||+.|+|.... .+++ ..++++|-.|+.++..|++.-+
T Consensus 20 ~ia~~ESgg~~~aing~~wdiNai~g~psrGLmQ~i~stfna~----~~pg-----~~ni~Npidna~AAi~yi~~rY 88 (235)
T COG3953 20 RIASRESGGNPNAINGILWDINAIPGDPSRGLMQTIPSTFNAN----KKPG-----QGNILNPIDNAAAAIRYIKTRY 88 (235)
T ss_pred hhhhhhcCCCcccccccccccccccCchhhhHHHHhHHHHhhh----cccC-----ccchhchhhHHHHHHHHHhhhc
Confidence 48889998 55554 235689999999998743 2222 3589999999999999887755
No 50
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=95.70 E-value=0.02 Score=58.24 Aligned_cols=82 Identities=17% Similarity=0.045 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcC--C---------------------------------------------CCC
Q 014423 283 VAEIILSKYFSTKGVKPTYLCAIAEMVSM--R---------------------------------------------FVN 315 (425)
Q Consensus 283 ~~~~~i~~~a~~~~vdp~Ll~Ai~~~ES~--~---------------------------------------------~a~ 315 (425)
.....+.+..++||||+.+|.||.-+||+ + ..-
T Consensus 111 ~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~G 190 (343)
T COG2951 111 QYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALKG 190 (343)
T ss_pred HHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCcccccc
Confidence 33457777778888887777777777776 1 111
Q ss_pred CCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCC-CHHHHHHHHHHHHHHHH
Q 014423 316 GVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLT-KPFVSMYFGAAYLSYLS 369 (425)
Q Consensus 316 s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~-dP~~NI~~Ga~YL~~l~ 369 (425)
|.+||.|.||+||+|-...+-+.+ +-. .-|+. ++.+.+--.+.||+..=
T Consensus 191 SwAGAmGq~QFmPss~~~YaVD~D--GDG---~~Diw~s~~DAlaS~ANyL~~~G 240 (343)
T COG2951 191 SWAGAMGQTQFMPSSYLKYAVDGD--GDG---HRDIWNSVPDALASAANYLKSHG 240 (343)
T ss_pred hhhhccCCcccCcHHHHHhhhcCC--CCC---ccCCccChHhHHHHHHHHHHHcC
Confidence 334788999999999664433332 222 44676 88899999999998754
No 51
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=95.05 E-value=0.098 Score=41.77 Aligned_cols=64 Identities=17% Similarity=0.045 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHH
Q 014423 76 PDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLK 151 (425)
Q Consensus 76 p~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~ 151 (425)
.....+|+.-||+.|+.+ .++.|.+|+.||.++|-.-+ |-..|-. .+ +.--|..-|.++.++|.
T Consensus 4 ~~~Wd~ia~cESgGn~~~-----ntgnG~yGg~Qf~~sTW~a~----Gg~~yap--~~-~~As~~eQi~~A~~l~~ 67 (77)
T PF06737_consen 4 ASDWDAIAQCESGGNWAI-----NTGNGYYGGLQFSQSTWRAY----GGSGYAP--RP-DQASRAEQIAVAEKLYA 67 (77)
T ss_dssp HHHHHHHHHHHCTT-TT--------SSSBBTTTTBBHHHHHHT----TGGGT-S--SC-CCS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCcc-----CCCCCccceeccCHHHHHHh----CCCcCCC--Ch-hhCCHHHHHHHHHHHHH
Confidence 446678999999999977 66788999999999764322 3223322 12 46689999999988876
No 52
>PF00062 Lys: C-type lysozyme/alpha-lactalbumin family; InterPro: IPR001916 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 22 GH22 from CAZY comprises enzymes with two known activities; lysozyme type C (3.2.1.17 from EC) and alpha-lactalbumins. Asp and/or the carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base. Alpha-lactalbumin [, ] is a milk protein that acts as the regulatory subunit of lactose synthetase, acting to promote the conversion of galactosyltransferase to lactose synthase, which is essential for milk production. In the mammary gland, alpha-lactalbumin changes the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. Lysozymes (3.2.1.17 from EC) act as bacteriolytic enzymes by hydrolyzing the beta(1->4) bonds between N-acetylglucosamine and N-acetylmuramic acid in the peptidoglycan of prokaryotic cell walls. It has also been recruited for a digestive role in certain ruminants and colobine monkeys []. There are at least five different classes of lysozymes []: C (chicken type), G (goose type), phage-type (T4), fungi (Chalaropsis), and bacterial (Bacillus subtilis). There are few similarities in the sequences of the different types of lysozymes. Lysozyme type C and alpha-lactalbumin are similar both in terms of primary sequence and structure, and probably evolved from a common ancestral protein []. Around 35 to 40% of the residues are conserved in both proteins as well as the positions of the four disulphide bonds. There is, however, no similarity in function. Another significant difference between the two enzymes is that all lactalbumins have the ability to bind calcium [], while this property is restricted to only a few lysozymes []. The binding site was deduced using high resolution X-ray structure analysis and was shown to consist of three aspartic acid residues. It was first suggested that calcium bound to lactalbumin stabilised the structure, but recently it has been claimed that calcium controls the release of lactalbumin from the golgi membrane and that the pattern of ion binding may also affect the catalytic properties of the lactose synthetase complex.; PDB: 1HFX_A 1HMK_A 1HFY_B 1FKQ_A 1FKV_A 3B0K_B 1HML_A 1B9O_A 1A4V_A 3B0O_A ....
Probab=94.54 E-value=0.011 Score=51.73 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCcc
Q 014423 76 PDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITH 112 (425)
Q Consensus 76 p~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p 112 (425)
-.-..=||..||+||..|++.++ .+..++||+||+.
T Consensus 25 l~~WvCla~~eS~f~T~a~~~~~-~gS~dyGIFQIns 60 (125)
T PF00062_consen 25 LANWVCLAYHESGFNTSAVNYNN-DGSTDYGIFQINS 60 (125)
T ss_dssp HHHHHHHHHHHHTTBTT-EEEET-TSEEEETTTTEET
T ss_pred hhheeeeEecccCceeeccccCC-CCccccceeecCc
Confidence 44455689999999999999877 6677899999997
No 53
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=0.5 Score=42.75 Aligned_cols=103 Identities=16% Similarity=0.013 Sum_probs=69.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHcCCCcCCccc----------CCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCC
Q 014423 66 VRRHFRSQIDPDMICAIAELESDRQLLAVRY----------DKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDL 135 (425)
Q Consensus 66 ~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~----------~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~ 135 (425)
++...+||||--++.|.|++||+|.++|.-+ .++| .|+|.-|-...|-....++.|- .. ..
T Consensus 49 ~~~er~~GvPVpVlMAtiy~ESgFk~~ArPPRtklLgfIPW~rvS--sAyGysQAlDgTWa~YqretG~--W~-----As 119 (197)
T COG4764 49 LRTEREYGVPVPVLMATIYTESGFKHNARPPRTKLLGFIPWKRVS--SAYGYSQALDGTWARYQRETGR--WS-----AS 119 (197)
T ss_pred HHHHHHhCCCchHHHHHHHHhhcCCCCCCCCcceeEeeeeccCcc--chhhhhHhhcccHHHHHHHhCC--cc-----cc
Confidence 3445689999999999999999999998332 1223 4889999999887766666552 11 12
Q ss_pred CCCHHHHHHHHHHHHHHHHHccCCC-CCHHHHHHhhcCCcccc
Q 014423 136 LFRPLVSIYFGAAYLKWLSTFQDKE-RTEEFVIRAYKGGTKKA 177 (425)
Q Consensus 136 l~dP~~NI~~Ga~yL~~l~~~~~~~-~~~~~alaAYNaG~g~v 177 (425)
..|-.+.|++=.||...-....|-. +|.-.-.-+|+.|-+..
T Consensus 120 RtdFaDAi~FvgWYh~ks~~~nGva~nD~y~lYlaYy~G~~gY 162 (197)
T COG4764 120 RTDFADAIDFVGWYHQKSQRVNGVARNDAYNLYLAYYSGHGGY 162 (197)
T ss_pred cchHHHHHHHHHHHHHhHHhhcCccccchHHHHHHHHhccccc
Confidence 4578889999889987655544321 22222334566665543
No 54
>PF06871 TraH_2: TraH_2; InterPro: IPR010680 This family consists of several TraH proteins, which seem to be specific to Agrobacterium and Rhizobium species. This protein is thought to be involved in conjugal transfer but its function is unknown. This family does not appear to be related to IPR010927 from INTERPRO.
Probab=92.66 E-value=0.28 Score=45.38 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHcCCCcCCcccCCC----------CC--------------CCCcccccCccccHHHHHHH
Q 014423 66 VRRHFRSQIDPDMICAIAELESDRQLLAVRYDKK----------SK--------------EAKVGLMQITHKNAVWLFSE 121 (425)
Q Consensus 66 ~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~~~~~~----------S~--------------~ga~GLMQI~p~Ta~~~~~~ 121 (425)
.+.+..-.+.|.++.-.+..--+-+|.++....- |+ +--+||.|+--
T Consensus 7 I~qCADPsLkPAIVEqFi~aaGS~DPLaVTVrsG~R~vLVPkp~tpdeAm~liR~~~G~avVRVGiTQyPA--------- 77 (206)
T PF06871_consen 7 IKQCADPSLKPAIVEQFIAAAGSQDPLAVTVRSGGRLVLVPKPKTPDEAMALIRQYVGQAVVRVGITQYPA--------- 77 (206)
T ss_pred HHhccCCCCCHHHHHHHHHHhCCCCCceEEEEECCEEEEecCCCCHHHHHHHHHHhcCceEEEEeeeeccc---------
Confidence 3444455677777776666665667776543111 10 11578888752
Q ss_pred hCCcccCCCCCCCCCCCHHHHHHHHHHHHHHHHH----ccCCCCC-------HHHHHHhhcCCcc
Q 014423 122 MGYRLYDVEQNPDLLFRPLVSIYFGAAYLKWLST----FQDKERT-------EEFVIRAYKGGTK 175 (425)
Q Consensus 122 ~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~~l~~----~~~~~~~-------~~~alaAYNaG~g 175 (425)
|++......-..+|+|||.||+.|+..+...++ .||+.-+ .+.|+-||-.|.-
T Consensus 78 -GvGv~da~qLk~dlvd~C~NlRmGTalFAKV~RIV~KWYGnPt~~evlPQ~fdDAi~AW~TG~F 141 (206)
T PF06871_consen 78 -GVGVKDAGQLKPDLVDACENLRMGTALFAKVYRIVTKWYGNPTSKEVLPQVFDDAIYAWKTGYF 141 (206)
T ss_pred -ccccccHHHcCchhhhHhhhhhhhHHHHHHHHHhhhhhcCCCccchhhhHHHHHHHhhhhccee
Confidence 111111111122799999999999998885554 5554322 3578889988853
No 55
>PF01832 Glucosaminidase: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; InterPro: IPR002901 This domain is found in many different proteins including mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (3.2.1.96 from EC).It is also found in flagellar protein J (P75942 from SWISSPROT), which has been shown to hydrolyse peptidoglycan [].; GO: 0004040 amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3FI7_A 2ZYC_A 3K3T_A.
Probab=92.53 E-value=0.15 Score=44.48 Aligned_cols=32 Identities=28% Similarity=0.194 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 62 AYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 62 a~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
++...+.+.+++|+|.++.|++.+||+|-...
T Consensus 2 ~~~~~~~~~~~gI~~~~~laQa~lESg~G~s~ 33 (136)
T PF01832_consen 2 AKAAIEAAKKYGIPPSLILAQAILESGWGTSR 33 (136)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCc
Confidence 56677888899999999999999999996544
No 56
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=90.97 E-value=1.1 Score=35.78 Aligned_cols=61 Identities=18% Similarity=0.035 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcC--CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHHHHHH
Q 014423 300 TYLCAIAEMVSM--RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGAAYLS 366 (425)
Q Consensus 300 ~Ll~Ai~~~ES~--~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga~YL~ 366 (425)
....+|+.-||+ ..+++..|+.|+.||.++|-. .+|-..|.- ..+.--|+.-|.++.+.++
T Consensus 5 ~~Wd~ia~cESgGn~~~ntgnG~yGg~Qf~~sTW~----a~Gg~~yap--~~~~As~~eQi~~A~~l~~ 67 (77)
T PF06737_consen 5 SDWDAIAQCESGGNWAINTGNGYYGGLQFSQSTWR----AYGGSGYAP--RPDQASRAEQIAVAEKLYA 67 (77)
T ss_dssp HHHHHHHHHHCTT-TT---SSSBBTTTTBBHHHHH----HTTGGGT-S--SCCCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccCCCCCccceeccCHHHHH----HhCCCcCCC--ChhhCCHHHHHHHHHHHHH
Confidence 345689999999 555667799999999999954 345444430 1345678888888887665
No 57
>cd00119 LYZ1 C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have primarily bacteriolytic function; hydrolysis of peptidoglycan of prokaryotic cell walls and transglycosylation. LA is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.
Probab=90.73 E-value=0.19 Score=43.78 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=25.9
Q ss_pred cCCCHHHHHHHHHHhcC--CCCCCCC----CCccccccCh
Q 014423 295 KGVKPTYLCAIAEMVSM--RFVNGVS----PRIGLMGIDY 328 (425)
Q Consensus 295 ~~vdp~Ll~Ai~~~ES~--~~a~s~~----ga~GLMQi~p 328 (425)
.+++.....+||++||+ +.+++.. ..+|||||+.
T Consensus 19 ~~~~l~~Wvcia~~ES~~nt~a~~~n~~gs~dyGlfQINs 58 (123)
T cd00119 19 PGISLANWVCLAEHESGFNTQAVNNNNDGSTDYGLFQINS 58 (123)
T ss_pred CCCCHHHHHHHHHHHHCCCccceecCCCCCeeEeEEEecc
Confidence 34567777799999999 6676643 3689999994
No 58
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.04 E-value=3.2 Score=37.70 Aligned_cols=122 Identities=17% Similarity=0.007 Sum_probs=82.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhcC--CCCCCCC-------------CCccccccChhhHHHHHHHcCCCcCCCCCCCCCCC
Q 014423 289 SKYFSTKGVKPTYLCAIAEMVSM--RFVNGVS-------------PRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTK 353 (425)
Q Consensus 289 ~~~a~~~~vdp~Ll~Ai~~~ES~--~~a~s~~-------------ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~d 353 (425)
.+..++||||--++.|.|++||+ +++.-+. .|+|.-|-+..|-...-++-|-- . ....|
T Consensus 49 ~~~er~~GvPVpVlMAtiy~ESgFk~~ArPPRtklLgfIPW~rvSsAyGysQAlDgTWa~YqretG~W--~----AsRtd 122 (197)
T COG4764 49 LRTEREYGVPVPVLMATIYTESGFKHNARPPRTKLLGFIPWKRVSSAYGYSQALDGTWARYQRETGRW--S----ASRTD 122 (197)
T ss_pred HHHHHHhCCCchHHHHHHHHhhcCCCCCCCCcceeEeeeeccCccchhhhhHhhcccHHHHHHHhCCc--c----cccch
Confidence 34568899999999999999999 6665433 57799999988866666666643 2 33566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCc-hhHHhHHhccCcccccccc------cchHHHHHHHHHHhhhhhcc
Q 014423 354 PFVSMYFGAAYLSYLSEYEGKERT-PQFVVQAYLEGPKNVNLQE------TGPSWLKFEQALGNYEATKS 416 (425)
Q Consensus 354 P~~NI~~Ga~YL~~l~~~~g~~~~-~~~alaAYNaGp~~v~~~~------~~~y~~k~~~~~~~y~~~~~ 416 (425)
=.+.|+|=.+|...-.+-+|--++ ..--.-||..|.+...+.. ...+-+|....-..|++-.+
T Consensus 123 FaDAi~FvgWYh~ks~~~nGva~nD~y~lYlaYy~G~~gY~rg~~~~~~~~~~~a~k~~~mA~~y~aQlr 192 (197)
T COG4764 123 FADAIDFVGWYHQKSQRVNGVARNDAYNLYLAYYSGHGGYARGSWRDNSWVKAGARKTQSMASRYEAQLR 192 (197)
T ss_pred HHHHHHHHHHHHHhHHhhcCccccchHHHHHHHHhccccccCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777999999999888866654432 2334557777776654421 12234455555556666555
No 59
>PF01832 Glucosaminidase: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; InterPro: IPR002901 This domain is found in many different proteins including mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (3.2.1.96 from EC).It is also found in flagellar protein J (P75942 from SWISSPROT), which has been shown to hydrolyse peptidoglycan [].; GO: 0004040 amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3FI7_A 2ZYC_A 3K3T_A.
Probab=89.80 E-value=0.55 Score=40.89 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC----CCCCCCCCCccccc
Q 014423 287 ILSKYFSTKGVKPTYLCAIAEMVSM----RFVNGVSPRIGLMG 325 (425)
Q Consensus 287 ~i~~~a~~~~vdp~Ll~Ai~~~ES~----~~a~s~~ga~GLMQ 325 (425)
.+.++++++||+|.++.|++..||+ ..+....+-.||+-
T Consensus 4 ~~~~~~~~~gI~~~~~laQa~lESg~G~s~~a~~~nN~fGi~~ 46 (136)
T PF01832_consen 4 AAIEAAKKYGIPPSLILAQAILESGWGTSRLAKEYNNFFGIKA 46 (136)
T ss_dssp HHHHHHHHCTS-HHHHHHHHHHHHTTTTTTTTSCTT-TT--BS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhcCCCCccccccccccceec
Confidence 5778999999999999999999999 44455556667776
No 60
>smart00047 LYZ2 Lysozyme subfamily 2. Eubacterial enzymes distantly related to eukaryotic lysozymes.
Probab=87.08 E-value=1.1 Score=40.09 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 56 TEMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 56 ~~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
.-+..++....+.+.+++|+|.++.|+|..||+|-...
T Consensus 10 ~fi~~~~~~A~~~~~~~gi~~Sv~iAQAiLESgwG~S~ 47 (147)
T smart00047 10 EFVGKIFNEAQKAYQINGVYPSILIAQAALESGWGTSK 47 (147)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCC
Confidence 34456666777788899999999999999999997644
No 61
>PF06871 TraH_2: TraH_2; InterPro: IPR010680 This family consists of several TraH proteins, which seem to be specific to Agrobacterium and Rhizobium species. This protein is thought to be involved in conjugal transfer but its function is unknown. This family does not appear to be related to IPR010927 from INTERPRO.
Probab=86.73 E-value=0.55 Score=43.49 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=41.4
Q ss_pred CccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHH----HhcCCCCc-------hhHHhHHhccC
Q 014423 320 RIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFGAAYLSYLS----EYEGKERT-------PQFVVQAYLEG 388 (425)
Q Consensus 320 a~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~Ga~YL~~l~----~~~g~~~~-------~~~alaAYNaG 388 (425)
.+||-|+--..+---+.++ ..||+|||.||+.|+..++..+ +.+||..+ ..-|+-||-.|
T Consensus 69 RVGiTQyPAGvGv~da~qL---------k~dlvd~C~NlRmGTalFAKV~RIV~KWYGnPt~~evlPQ~fdDAi~AW~TG 139 (206)
T PF06871_consen 69 RVGITQYPAGVGVKDAGQL---------KPDLVDACENLRMGTALFAKVYRIVTKWYGNPTSKEVLPQVFDDAIYAWKTG 139 (206)
T ss_pred EEeeeecccccccccHHHc---------CchhhhHhhhhhhhHHHHHHHHHhhhhhcCCCccchhhhHHHHHHHhhhhcc
Confidence 4688888743322111122 2589999999999999988766 77888744 34577777766
Q ss_pred c
Q 014423 389 P 389 (425)
Q Consensus 389 p 389 (425)
.
T Consensus 140 ~ 140 (206)
T PF06871_consen 140 Y 140 (206)
T ss_pred e
Confidence 3
No 62
>smart00263 LYZ1 Alpha-lactalbumin / lysozyme C.
Probab=83.98 E-value=0.77 Score=40.28 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhcC--CCCCCCC----CCccccccCh
Q 014423 297 VKPTYLCAIAEMVSM--RFVNGVS----PRIGLMGIDY 328 (425)
Q Consensus 297 vdp~Ll~Ai~~~ES~--~~a~s~~----ga~GLMQi~p 328 (425)
++..--..||+.||+ +.+++.. ..+|||||+.
T Consensus 23 ~~l~~WvCia~~ES~~~t~a~~~n~~gs~dyGLfQINs 60 (127)
T smart00263 23 ISLANWVCLAFHESGYNTQATNYNNGGSTDYGIFQINS 60 (127)
T ss_pred cCHHHHHHHHHHHhcCCCcceecCCCCCceeeEEEecc
Confidence 334445579999999 6666532 3489999994
No 63
>smart00047 LYZ2 Lysozyme subfamily 2. Eubacterial enzymes distantly related to eukaryotic lysozymes.
Probab=80.85 E-value=4.2 Score=36.44 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC----CCCCCCCCCccc
Q 014423 286 IILSKYFSTKGVKPTYLCAIAEMVSM----RFVNGVSPRIGL 323 (425)
Q Consensus 286 ~~i~~~a~~~~vdp~Ll~Ai~~~ES~----~~a~s~~ga~GL 323 (425)
....+.++.+||+|.++.|++..||+ ..+....+-.|+
T Consensus 17 ~~A~~~~~~~gi~~Sv~iAQAiLESgwG~S~La~~~nNlFGI 58 (147)
T smart00047 17 NEAQKAYQINGVYPSILIAQAALESGWGTSKLAKKYNNLFGI 58 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCCCCCCccCCCCCeecc
Confidence 46777889999999999999999999 334333444454
No 64
>PRK12710 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=79.59 E-value=2.6 Score=42.10 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
+..|+....+.+.++||+|.++.|.+..||||-...
T Consensus 134 I~~i~p~A~~~a~~~Gv~pSv~iAQAaLESGWGks~ 169 (291)
T PRK12710 134 VKSVWPTAKQAASLIGLDPKLLVAQAALETGWGKFV 169 (291)
T ss_pred HHHHHHHHHHHHHHhCcChHHHHHHHHHHccCCccc
Confidence 456667777888899999999999999999997654
No 65
>PRK05684 flgJ flagellar rod assembly protein/muramidase FlgJ; Validated
Probab=79.43 E-value=2.6 Score=42.54 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 57 EMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 57 ~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
=+..++....+.+.++||+|.++.|++.+||||-...
T Consensus 155 FI~~i~p~A~~~a~~~GIp~svilAQAaLESGWG~s~ 191 (312)
T PRK05684 155 FVARLSPPAQKAAQQSGVPHHLLLAQAALESGWGQRE 191 (312)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHhccCCccc
Confidence 3466777777788899999999999999999997654
No 66
>PRK12709 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=77.87 E-value=3.1 Score=42.12 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
+..+.....+.+.+|||+|.+|.|.+..||||-...
T Consensus 177 I~~i~p~A~~~a~~~GI~~sviiAQAaLESGWG~s~ 212 (320)
T PRK12709 177 VDKLAAPAQAASAATGIPARFIVGQAALESGWGKRE 212 (320)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHhccCCccc
Confidence 456666667778899999999999999999997665
No 67
>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ. The N-terminal region of this protein acts directly in flagellar rod assembly. The C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring.
Probab=76.87 E-value=3.5 Score=41.31 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 56 TEMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 56 ~~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
.-+..+.......+.++||+|.++.|.+..||||-...
T Consensus 150 ~Fi~~i~p~A~~~a~~~Gip~sv~iAQAaLESGWG~s~ 187 (294)
T TIGR02541 150 SFVNSMLPHARKAAQQLGVPPHLILAQAALESGWGQRQ 187 (294)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHccCCccc
Confidence 33456666667778899999999999999999997665
No 68
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=75.20 E-value=5 Score=37.19 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=34.8
Q ss_pred CcccccCccccHHHHHHHhCCcccCCCCCCCCCC-----CHHHHHHHHHHHHH---HHHHccCCCCCHHHHHHhhcCCc
Q 014423 104 KVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLF-----RPLVSIYFGAAYLK---WLSTFQDKERTEEFVIRAYKGGT 174 (425)
Q Consensus 104 a~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~-----dP~~NI~~Ga~yL~---~l~~~~~~~~~~~~alaAYNaG~ 174 (425)
..|++||| ..-...+||.. + +++. +-..-|.+=+++|. -|.+... ..+|......||+..
T Consensus 90 SWG~fQIM----Gfn~~~~Gy~s--v----~~fv~am~~se~~Ql~af~~Fi~~~~~L~~aLr-~~dW~~fAr~YNGp~ 157 (175)
T PF11860_consen 90 SWGLFQIM----GFNWKALGYAS--V----EEFVEAMCESEAAQLDAFVRFIKANPALLKALR-AKDWAAFARGYNGPG 157 (175)
T ss_pred hhhHHHHH----HHHHHHcCCCC--H----HHHHHHHHhCHHHHHHHHHHHHHcCHHHHHHHH-hCCHHHHHHHcCCch
Confidence 68999999 34446667742 1 1222 33444555666665 2444332 368987777777553
No 69
>PRK12712 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=74.47 E-value=4.3 Score=41.45 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 55 QTEMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 55 ~~~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
+.-+..++......+.++||+|.++.|.+..||||-...
T Consensus 198 ~~FI~~l~p~A~~aa~~~Gi~psv~lAQAaLESGWGks~ 236 (344)
T PRK12712 198 SAFVARMAGPAEAASRASGVPARLIVGQAALESGWGRRE 236 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHccCCccc
Confidence 444567777778888999999999999999999997665
No 70
>PRK12713 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=72.86 E-value=4.9 Score=40.96 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCCc
Q 014423 56 TEMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLAV 94 (425)
Q Consensus 56 ~~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a~ 94 (425)
.=+..+.....+.+.++||+|.++.|.+..||||-...+
T Consensus 183 ~FI~~i~p~A~~~ak~~Gi~asviiAQAaLESGWG~s~l 221 (339)
T PRK12713 183 DFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRREL 221 (339)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCCcccc
Confidence 334666777778888999999999999999999976653
No 71
>PRK08581 N-acetylmuramoyl-L-alanine amidase; Validated
Probab=71.47 E-value=5.3 Score=43.58 Aligned_cols=37 Identities=27% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 57 EMRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 57 ~~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
-+..|+....+.+.+|||+|.++.|+|.+||||--..
T Consensus 323 FI~~iap~A~~v~k~yGI~aSV~IAQAILESGWGkS~ 359 (619)
T PRK08581 323 FIKSIAKDAHRIGQDNDIYASVMIAQAILESDSGQSA 359 (619)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHccCCccc
Confidence 3466777777788899999999999999999996543
No 72
>PF07182 DUF1402: Protein of unknown function (DUF1402); InterPro: IPR009842 This family consists of several hypothetical bacterial proteins of around 310 residues in length. Members of this family seem to be found exclusively in Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=71.27 E-value=5.8 Score=38.73 Aligned_cols=68 Identities=25% Similarity=0.263 Sum_probs=42.7
Q ss_pred cccccChhhHHHHHH----HcCCCcCCCCCCC----CCCCHHHHHHHHHHHHHHHH-HhcC--CCC---chhHHhHHhcc
Q 014423 322 GLMGIDYSTAFWIYM----ELGYRAYKVDSAD----DLTKPFVSMYFGAAYLSYLS-EYEG--KER---TPQFVVQAYLE 387 (425)
Q Consensus 322 GLMQi~p~Ta~~~~~----~~g~~~~~~~s~~----~l~dP~~NI~~Ga~YL~~l~-~~~g--~~~---~~~~alaAYNa 387 (425)
||-||+|-||-.+.. --|++..+..... .+.||+.++.+-++.+++-+ .|.. +.+ ++-.+..-||.
T Consensus 181 GLGQinPLTAL~~tD~V~~~Sg~~kL~~~da~~vY~aiMdPd~Sl~y~AA~Ir~sIdaYr~ia~~DIS~NPGlTATLYNv 260 (303)
T PF07182_consen 181 GLGQINPLTALMMTDMVSRVSGYPKLDEDDAAGVYKAIMDPDRSLAYMAAIIRDSIDAYRSIAGFDISGNPGLTATLYNV 260 (303)
T ss_pred cccccChhHHHHHHHHHHhccCCccCCccchHHHHHHhhCCcccHHHHHHHHHHHHHHHHHhcCCcccCCCCcceEeecC
Confidence 999999999966543 3344433322222 35699999999999999888 5542 111 12445555665
Q ss_pred Cc
Q 014423 388 GP 389 (425)
Q Consensus 388 Gp 389 (425)
|-
T Consensus 261 Gn 262 (303)
T PF07182_consen 261 GN 262 (303)
T ss_pred CC
Confidence 53
No 73
>PF07759 DUF1615: Protein of unknown function (DUF1615); InterPro: IPR011673 This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family (e.g. Q8Z8Z7 from SWISSPROT, Q8ZRF4 from SWISSPROT) are thought to be lipoproteins. Another member of this family (Q93SV8 from SWISSPROT) is thought to be involved in photosynthesis [].
Probab=66.82 E-value=1.4 Score=43.83 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=40.6
Q ss_pred CCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhhcCCcccc
Q 014423 100 SKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLKWLSTFQDKERTEEFVIRAYKGGTKKA 177 (425)
Q Consensus 100 S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~~l~~~~~~~~~~~~alaAYNaG~g~v 177 (425)
+++.--|-|||--.=|..-.+ ++..-...+-++++|-=.--+++|+.+|-..-.-| .++..-.|=||+|--.-
T Consensus 122 NPV~TgGpMQVSI~fAe~h~r--~yp~~~~gsiR~evftrrGGvyfG~a~LL~Ypa~Y---~~~lYRFADfNAG~YaS 194 (319)
T PF07759_consen 122 NPVHTGGPMQVSIAFAEAHAR--GYPYPVDGSIRDEVFTRRGGVYFGIAHLLGYPANY---DDPLYRFADFNAGWYAS 194 (319)
T ss_pred CCcccCCCceeeHHHHHHhcc--CCCCCCCccHHHHHHhcccchHHhHHHHcCCCCCC---Cccceeecccccchhhh
Confidence 344456999998544433322 22211111123455555556777776655443334 36777888999996543
No 74
>PRK12711 flgJ flagellar rod assembly protein/muramidase FlgJ; Reviewed
Probab=66.76 E-value=8.2 Score=39.78 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
+..|+....+.+.+|||+|.++.|.+..||+|-...
T Consensus 219 I~~Iap~Aqkvak~yGI~PSV~IAQAALESGWG~S~ 254 (392)
T PRK12711 219 VAKIWTHAQKAARELGVDPRALVAQAALETGWGRRG 254 (392)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHccCCccc
Confidence 456666667778899999999999999999997665
No 75
>COG1705 FlgJ Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.85 E-value=10 Score=35.88 Aligned_cols=36 Identities=22% Similarity=0.051 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
+..++......+.++||+|.++.|.+..||+|-...
T Consensus 47 i~~i~~~A~~~~~~~gi~~Si~iAQAiLESgwGks~ 82 (201)
T COG1705 47 IDKIAPAAQPLAQEYGILPSITIAQAILESGWGKSE 82 (201)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHcCCcchh
Confidence 445555556667789999999999999999997653
No 76
>PRK05684 flgJ flagellar rod assembly protein/muramidase FlgJ; Validated
Probab=62.46 E-value=17 Score=36.85 Aligned_cols=36 Identities=25% Similarity=0.070 Sum_probs=28.6
Q ss_pred cHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 276 SRVELKAVAEIILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 276 ~~~~~~~~~~~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
++.+...-......+.++++||+|.++.|.+..||+
T Consensus 151 s~~~FI~~i~p~A~~~a~~~GIp~svilAQAaLESG 186 (312)
T PRK05684 151 SSDDFVARLSPPAQKAAQQSGVPHHLLLAQAALESG 186 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHhcc
Confidence 344444434457788899999999999999999999
No 77
>PRK06347 autolysin; Reviewed
Probab=60.77 E-value=11 Score=41.43 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCcCC
Q 014423 58 MRAVAYIVVRRHFRSQIDPDMICAIAELESDRQLLA 93 (425)
Q Consensus 58 ~~ava~~i~~~~~~~~vdp~Ll~Aia~~ES~f~p~a 93 (425)
+..|+....+.+.+|||+|.++.|+|.+||||-...
T Consensus 154 I~~i~~~A~~~~~~~gi~aSv~iAQAiLESgwG~S~ 189 (592)
T PRK06347 154 IQTIQASSSQIAAENDLYASVMIAQAILESAYGTSE 189 (592)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHccCCcch
Confidence 456677777888899999999999999999997654
No 78
>PRK12709 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=58.37 E-value=21 Score=36.23 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 278 VELKAVAEIILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 278 ~~~~~~~~~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
.+...-.....++.+++|||+|.+|.|.+..||+
T Consensus 174 ~~FI~~i~p~A~~~a~~~GI~~sviiAQAaLESG 207 (320)
T PRK12709 174 DAFVDKLAAPAQAASAATGIPARFIVGQAALESG 207 (320)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHhcc
Confidence 3433333457788899999999999999999999
No 79
>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ. The N-terminal region of this protein acts directly in flagellar rod assembly. The C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring.
Probab=54.39 E-value=27 Score=35.05 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 286 IILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 286 ~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
....+.++++||+|.++.|.+..||+
T Consensus 157 p~A~~~a~~~Gip~sv~iAQAaLESG 182 (294)
T TIGR02541 157 PHARKAAQQLGVPPHLILAQAALESG 182 (294)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 46778899999999999999999999
No 80
>cd00736 bacteriophage_lambda_lysozyme The lysozyme from bacteriophage lambda hydrolyses the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. But unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli. However, they differ structurally.
Probab=51.36 E-value=73 Score=28.84 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=30.6
Q ss_pred CCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHH
Q 014423 101 KEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLK 151 (425)
Q Consensus 101 ~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~ 151 (425)
...|.|--||||.|-..+.+.+|+ .-|.|..-=.++...|+
T Consensus 60 ~StAaGrYQfl~~Tw~~~~~~~gl----------~~F~P~~QD~~A~~Li~ 100 (151)
T cd00736 60 CSTAAGRYQFLSRTWDAYAKQYGL----------YDFSPESQDLVAYQLIR 100 (151)
T ss_pred CccccchhhccHHHHHHHHHHcCC----------CCCCHHHHHHHHHHHHH
Confidence 467999999999998888888776 35677776666655444
No 81
>PRK12710 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=50.90 E-value=32 Score=34.45 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
.....+.+++|||+|.++.|.+..||+
T Consensus 138 ~p~A~~~a~~~Gv~pSv~iAQAaLESG 164 (291)
T PRK12710 138 WPTAKQAASLIGLDPKLLVAQAALETG 164 (291)
T ss_pred HHHHHHHHHHhCcChHHHHHHHHHHcc
Confidence 347778899999999999999999998
No 82
>PRK08581 N-acetylmuramoyl-L-alanine amidase; Validated
Probab=45.70 E-value=39 Score=37.09 Aligned_cols=26 Identities=12% Similarity=-0.070 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 286 IILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 286 ~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
....+.+++|||+|.++.|.|..||+
T Consensus 329 p~A~~v~k~yGI~aSV~IAQAILESG 354 (619)
T PRK08581 329 KDAHRIGQDNDIYASVMIAQAILESD 354 (619)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 46777889999999999999999998
No 83
>PRK12712 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=43.78 E-value=46 Score=34.15 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
.....+.+++|||+|.++.|.+..||+
T Consensus 205 ~p~A~~aa~~~Gi~psv~lAQAaLESG 231 (344)
T PRK12712 205 AGPAEAASRASGVPARLIVGQAALESG 231 (344)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHcc
Confidence 357788999999999999999999999
No 84
>PRK12711 flgJ flagellar rod assembly protein/muramidase FlgJ; Reviewed
Probab=41.75 E-value=56 Score=33.85 Aligned_cols=27 Identities=26% Similarity=0.122 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
....++.+++|||+|.++.|.+..||+
T Consensus 223 ap~Aqkvak~yGI~PSV~IAQAALESG 249 (392)
T PRK12711 223 WTHAQKAARELGVDPRALVAQAALETG 249 (392)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 347788899999999999999999998
No 85
>PF10715 REGB_T4: Endoribonuclease RegB T4-bacteriophage encoded; InterPro: IPR019653 The RegB endoribonuclease encoded by Bacteriophage T4 is a unique sequence-specific nuclease that cleaves in the middle of GGAG or, in a few cases, GGAU tetranucleotides, preferentially those found in the Shine-Dalgarno regions of early phage mRNAs. T4 regB expression is regulated autogenously by attacking its own mRNA. The deduced primary structure of RegB proteins in many phages is almost identical to that of T4, while the sequences of RegB encoded by Enterobacteria phage RB69, Enterobacteria phage TuIa and Enterobacteria phage RB49 show substantial divergence from their T4 counterpart []. In RB49 regB expression is regulated by both RegB and Escherichia coli endoribonuclease E. ; PDB: 2HX6_A.
Probab=41.28 E-value=0.98 Score=40.78 Aligned_cols=96 Identities=18% Similarity=-0.002 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC-----CCCCCCCCCccccccChhhHHHHHHHcCCCcCCCCCCCCCCCHHHHHHHH
Q 014423 287 ILSKYFSTKGVKPTYLCAIAEMVSM-----RFVNGVSPRIGLMGIDYSTAFWIYMELGYRAYKVDSADDLTKPFVSMYFG 361 (425)
Q Consensus 287 ~i~~~a~~~~vdp~Ll~Ai~~~ES~-----~~a~s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~s~~~l~dP~~NI~~G 361 (425)
.+.+.++..|+.-. .||+++||. ........+.|+.|=.-.|....-..+|.+... ...-+--.+..+.
T Consensus 19 ~~~~~~~~~~~g~~--faI~~~es~ag~~~~~~~~~~~~~g~fqni~~tv~~~~~~~g~~~~~----~~~~~~l~~~~~s 92 (150)
T PF10715_consen 19 KIGKLGRNSGLGYI--FAILWQESSAGENIVRNIKKHYAYGLFQNIKPTVKEVRKFLGMPMRP----AVIIKLLEGVEYS 92 (150)
T ss_dssp HHHHHHHHHTS------EEE--HHHHHHHHHTSTT--HHHHHHHHGGGGHHHHHHHHSSS-S-----SSSSS--SS-SS-
T ss_pred HHHHHHhccCccee--eeeeechhHHHHHHhhccccccchhcccchhhhHHHHHHhcCCCCCH----HHHHHhhcccCcc
Confidence 44555555444433 349999998 233344456799876666777777788875333 2222333344444
Q ss_pred HHH----HHHHH-HhcCCCCchhHHhHHhccCccc
Q 014423 362 AAY----LSYLS-EYEGKERTPQFVVQAYLEGPKN 391 (425)
Q Consensus 362 a~Y----L~~l~-~~~g~~~~~~~alaAYNaGp~~ 391 (425)
+.. |...+ -..|++ +.+++.||+|+..
T Consensus 93 a~~a~~el~yw~ei~kgn~---~~~lasynag~~~ 124 (150)
T PF10715_consen 93 ALRASRELYYWLEIHKGNL---WKALASYNAGWNY 124 (150)
T ss_dssp -SEE--------EEEETTE---EEEEEE--SS---
T ss_pred HHHHhhhcccccccccCch---hhhhhcccCCCcc
Confidence 443 34444 455777 9999999999986
No 86
>PRK06347 autolysin; Reviewed
Probab=38.21 E-value=58 Score=35.93 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
.....+.+++|||+|.++.|.|..||+
T Consensus 158 ~~~A~~~~~~~gi~aSv~iAQAiLESg 184 (592)
T PRK06347 158 QASSSQIAAENDLYASVMIAQAILESA 184 (592)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHcc
Confidence 346778899999999999999999998
No 87
>PRK12713 flgJ flagellar rod assembly protein/muramidase FlgJ; Provisional
Probab=37.61 E-value=56 Score=33.47 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 285 EIILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 285 ~~~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
.....+.++++||+|.++.|.+..||+
T Consensus 189 ~p~A~~~ak~~Gi~asviiAQAaLESG 215 (339)
T PRK12713 189 SRAANVAAQQSGVPARLILGQAALESG 215 (339)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHcc
Confidence 346778899999999999999999999
No 88
>PF07759 DUF1615: Protein of unknown function (DUF1615); InterPro: IPR011673 This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family (e.g. Q8Z8Z7 from SWISSPROT, Q8ZRF4 from SWISSPROT) are thought to be lipoproteins. Another member of this family (Q93SV8 from SWISSPROT) is thought to be involved in photosynthesis [].
Probab=36.13 E-value=13 Score=37.14 Aligned_cols=71 Identities=25% Similarity=0.276 Sum_probs=43.0
Q ss_pred CCCCCccccccChhhHHHHHHHcCCCcCCCC-CC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCchhHHhHHhccCcccc
Q 014423 316 GVSPRIGLMGIDYSTAFWIYMELGYRAYKVD-SA-DDLTKPFVSMYFGAAYLSYLSEYEGKERTPQFVVQAYLEGPKNV 392 (425)
Q Consensus 316 s~~ga~GLMQi~p~Ta~~~~~~~g~~~~~~~-s~-~~l~dP~~NI~~Ga~YL~~l~~~~g~~~~~~~alaAYNaGp~~v 392 (425)
++..--|-|||-=.=|...++ +++ |... |+ +++|--.--+++|++ +|+.|-.+-..+.+-.|-||+|--.-
T Consensus 122 NPV~TgGpMQVSI~fAe~h~r--~yp-~~~~gsiR~evftrrGGvyfG~a---~LL~Ypa~Y~~~lYRFADfNAG~YaS 194 (319)
T PF07759_consen 122 NPVHTGGPMQVSIAFAEAHAR--GYP-YPVDGSIRDEVFTRRGGVYFGIA---HLLGYPANYDDPLYRFADFNAGWYAS 194 (319)
T ss_pred CCcccCCCceeeHHHHHHhcc--CCC-CCCCccHHHHHHhcccchHHhHH---HHcCCCCCCCccceeecccccchhhh
Confidence 344455999998655555544 222 2211 11 334444455677776 66777666656688899999997654
No 89
>COG3179 Predicted chitinase [General function prediction only]
Probab=32.81 E-value=1.8e+02 Score=27.40 Aligned_cols=71 Identities=24% Similarity=0.147 Sum_probs=44.3
Q ss_pred CcccccCcccc-HHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHH-HHHHccCCCCCHHHHHHhhcCCcccc
Q 014423 104 KVGLMQITHKN-AVWLFSEMGYRLYDVEQNPDLLFRPLVSIYFGAAYLK-WLSTFQDKERTEEFVIRAYKGGTKKA 177 (425)
Q Consensus 104 a~GLMQI~p~T-a~~~~~~~g~~~~~~~~~~~~l~dP~~NI~~Ga~yL~-~l~~~~~~~~~~~~alaAYNaG~g~v 177 (425)
..|+|||+-.+ -.+..+.+|.. +..+|..+--|.......++|-. .-...+.+.++.+.+-.--|+|....
T Consensus 118 grg~iQiTGrdNY~~~g~alg~d---lv~~P~~~~~~~~~a~~a~wyw~~~g~n~~aD~gd~~~VT~~INGG~NG~ 190 (206)
T COG3179 118 GRGLIQITGRDNYRRCGRALGLD---LVANPGQLELDPHAARVAAWYWKTRGLNALADEGDLVRVTRKINGGLNGL 190 (206)
T ss_pred cCcceeeecchHHHHHHHhhCCC---ccCChhhhccChHhhhhHHHHHHhccHHHhhccCChhhhhhhhcCccccH
Confidence 68999998433 34555665553 23345555556677777778766 22233445567877777788876554
No 90
>COG1705 FlgJ Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.95 E-value=67 Score=30.44 Aligned_cols=25 Identities=20% Similarity=0.091 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC
Q 014423 287 ILSKYFSTKGVKPTYLCAIAEMVSM 311 (425)
Q Consensus 287 ~i~~~a~~~~vdp~Ll~Ai~~~ES~ 311 (425)
.....++++||+|.++.|.+..||+
T Consensus 53 ~A~~~~~~~gi~~Si~iAQAiLESg 77 (201)
T COG1705 53 AAQPLAQEYGILPSITIAQAILESG 77 (201)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 5667789999999999999999999
No 91
>PF05497 Destabilase: Destabilase; InterPro: IPR008597 Destabilase (3.5.1.44 from EC) is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor XIIIa) between glutamine gamma-carboxamide and the epsilon-amino group of lysine [].; GO: 0003796 lysozyme activity; PDB: 2DQA_B 3AB6_A 3AYQ_A.
Probab=25.06 E-value=2e+02 Score=25.03 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHcCCCcCCcccCCCCCCCCcccccCccccHHHHHHHhCCcccCCCCCCCCCCCHHH-HHHHHHHHHHH
Q 014423 74 IDPDMICAIAELESDRQLLAVRYDKKSKEAKVGLMQITHKNAVWLFSEMGYRLYDVEQNPDLLFRPLV-SIYFGAAYLKW 152 (425)
Q Consensus 74 vdp~Ll~Aia~~ES~f~p~a~~~~~~S~~ga~GLMQI~p~Ta~~~~~~~g~~~~~~~~~~~~l~dP~~-NI~~Ga~yL~~ 152 (425)
|+..=|..|.++||+-|..+.=... -+....|++||.- +-|. .-|... -+...+ -|.-+. +..-.+.-+..
T Consensus 1 v~~~CL~CiC~~~SgC~~~~~C~~~-~~s~~CG~f~Is~--~YW~--Dag~~g--~~~~~~-a~~~Ca~d~~Ca~~tV~~ 72 (119)
T PF05497_consen 1 VSDDCLRCICEAESGCNMPAGCRMD-VGSLSCGPFQISW--PYWQ--DAGKPG--DSPSRD-AYERCANDPYCAERTVQN 72 (119)
T ss_dssp S-HHHHHHHHHHHCSS-S---EEEE-TTEEEETTTTEEH--HHHH--HTT--S--SS------HHHHHTSHHHHHHHHHH
T ss_pred CChHHHHHHhHHhhCCCCCCCCCCC-CCCceeeeeEecH--HHHH--HcCCCC--CCchhh-hHHHHcCCHHHHHHHHHH
Confidence 4556688999999998655521111 1223789999994 2333 222211 010111 344443 56667777777
Q ss_pred HHHccCCC--CC---HHHHHHhhcCCcccccccccchHHHHHH
Q 014423 153 LSTFQDKE--RT---EEFVIRAYKGGTKKATHKSTLPYWKSYI 190 (425)
Q Consensus 153 l~~~~~~~--~~---~~~alaAYNaG~g~v~~~~~~~~~~~y~ 190 (425)
++.+|+.. ++ -+.-++-=|.||..-+...+..||+++.
T Consensus 73 Ym~ry~~dCn~d~~dCed~ariH~~Gp~gC~~~~t~~Yw~~v~ 115 (119)
T PF05497_consen 73 YMARYGQDCNGDVIDCEDYARIHNGGPNGCKNPLTLGYWNRVK 115 (119)
T ss_dssp HHHHHCCT--SS---HHHHHHHHHH-TTGGG-CHHHHHHHHHC
T ss_pred HHHHHccCCCCCcchHHHHHHHHcCCCCcCCCCccHHHHHHHH
Confidence 77766532 33 4444445566766666667778887764
No 92
>PF07182 DUF1402: Protein of unknown function (DUF1402); InterPro: IPR009842 This family consists of several hypothetical bacterial proteins of around 310 residues in length. Members of this family seem to be found exclusively in Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=24.91 E-value=46 Score=32.69 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=46.6
Q ss_pred CcccccCccccHHHHHH----HhCCcccCCCCC---CCCCCCHHHHHHHHHHHHHHHHHccCC------CCCHHHHHHhh
Q 014423 104 KVGLMQITHKNAVWLFS----EMGYRLYDVEQN---PDLLFRPLVSIYFGAAYLKWLSTFQDK------ERTEEFVIRAY 170 (425)
Q Consensus 104 a~GLMQI~p~Ta~~~~~----~~g~~~~~~~~~---~~~l~dP~~NI~~Ga~yL~~l~~~~~~------~~~~~~alaAY 170 (425)
..||-||+|-||-.+.. ..|+...+.+.. -..+.||...+.+=|+.++.-++.+.. .+|.-+...-|
T Consensus 179 TFGLGQinPLTAL~~tD~V~~~Sg~~kL~~~da~~vY~aiMdPd~Sl~y~AA~Ir~sIdaYr~ia~~DIS~NPGlTATLY 258 (303)
T PF07182_consen 179 TFGLGQINPLTALMMTDMVSRVSGYPKLDEDDAAGVYKAIMDPDRSLAYMAAIIRDSIDAYRSIAGFDISGNPGLTATLY 258 (303)
T ss_pred cccccccChhHHHHHHHHHHhccCCccCCccchHHHHHHhhCCcccHHHHHHHHHHHHHHHHHhcCCcccCCCCcceEee
Confidence 57999999999987653 334433221100 014679999999999999977765431 13333556668
Q ss_pred cCCccc
Q 014423 171 KGGTKK 176 (425)
Q Consensus 171 NaG~g~ 176 (425)
|.|...
T Consensus 259 NvGnp~ 264 (303)
T PF07182_consen 259 NVGNPW 264 (303)
T ss_pred cCCCHH
Confidence 887543
No 93
>PRK10356 hypothetical protein; Provisional
Probab=20.86 E-value=67 Score=31.91 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHcCCCc
Q 014423 74 IDPDMICAIAELESDRQL 91 (425)
Q Consensus 74 vdp~Ll~Aia~~ES~f~p 91 (425)
|||.|+.|+|..||||-.
T Consensus 149 IP~slvlAQAAlESgWGt 166 (274)
T PRK10356 149 IPTSMVATMAAAESGWGT 166 (274)
T ss_pred CCHHHHHHHHHHhcccch
Confidence 788999999999999964
No 94
>PHA02750 hypothetical protein; Provisional
Probab=20.62 E-value=2.7e+02 Score=25.71 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=54.2
Q ss_pred CCCHHhHHHHHh---chHHHHHHHHhcccCCC-eeeeccCCCCCCCC--CHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014423 11 CIEAEDLKEMWK---EVEVSTEWIDAGEDRGQ-KVHLSRDPDGQPYL--TQTEMRAVAYIVVRRHFRSQIDPDMICAIAE 84 (425)
Q Consensus 11 ~~~~~d~~~~~~---~~~~~~~w~~~~~~~g~-~v~~~~~~~~~p~l--~~~~~~ava~~i~~~~~~~~vdp~Ll~Aia~ 84 (425)
.++|+=|+++.. +++|..-...+..-.-. --.+.|.. .-|+ +.-|+.++++||..+..+-.-|--.-.+++.
T Consensus 124 vldpnimr~iy~yvrd~evaq~~~eardmlkaaypqirr~s--dyyisi~amel~~vadiiaeakakgen~di~ar~~ae 201 (240)
T PHA02750 124 VLDPNIMREIYEYVRDFEVAQFLFEARDMLKAAYPQIRRAS--DYYISIPAMELDAVADIIAEAKAKGENDDIRARAEAE 201 (240)
T ss_pred ccChHHHHHHHHHhcChhHHHHHHHHHHHHHhhhhhhhhhh--heeEecchhhchhHHHHHHHHHhcCCChHHHHHHHHH
Confidence 589999999998 99998766654422100 00011111 1233 4567889999998776666667777889999
Q ss_pred HHcCCCcCC
Q 014423 85 LESDRQLLA 93 (425)
Q Consensus 85 ~ES~f~p~a 93 (425)
.|-+..|..
T Consensus 202 a~~~lspks 210 (240)
T PHA02750 202 AEEGLSPKS 210 (240)
T ss_pred hccCCCcce
Confidence 999988865
Done!