Query 014424
Match_columns 425
No_of_seqs 250 out of 1671
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 3E-118 6E-123 897.3 32.5 337 87-423 1-356 (361)
2 PLN02272 glyceraldehyde-3-phos 100.0 1E-114 2E-119 887.8 40.9 417 1-425 1-421 (421)
3 PLN02237 glyceraldehyde-3-phos 100.0 4E-113 8E-118 877.9 36.2 335 85-421 71-411 (442)
4 PRK15425 gapA glyceraldehyde-3 100.0 1E-112 3E-117 853.4 36.6 329 88-419 1-330 (331)
5 PTZ00023 glyceraldehyde-3-phos 100.0 2E-112 4E-117 854.7 36.0 333 88-421 1-336 (337)
6 PRK07403 glyceraldehyde-3-phos 100.0 1E-111 3E-116 847.7 36.0 330 89-421 1-335 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 5E-111 1E-115 844.6 36.1 334 88-424 1-336 (343)
8 PLN03096 glyceraldehyde-3-phos 100.0 1E-109 2E-114 847.1 36.5 335 85-421 56-393 (395)
9 PLN02358 glyceraldehyde-3-phos 100.0 6E-109 1E-113 830.7 37.4 332 89-420 5-337 (338)
10 PTZ00353 glycosomal glyceralde 100.0 1E-108 3E-113 827.0 35.3 333 88-423 1-338 (342)
11 PRK08955 glyceraldehyde-3-phos 100.0 1E-107 3E-112 819.6 33.4 329 88-420 1-332 (334)
12 PRK13535 erythrose 4-phosphate 100.0 4E-107 8E-112 817.0 34.6 328 90-420 2-334 (336)
13 COG0057 GapA Glyceraldehyde-3- 100.0 9E-107 2E-111 801.3 33.9 330 89-421 1-333 (335)
14 TIGR01534 GAPDH-I glyceraldehy 100.0 3E-106 6E-111 808.5 33.5 320 91-413 1-327 (327)
15 PRK08289 glyceraldehyde-3-phos 100.0 1E-105 3E-110 823.8 33.7 348 72-422 110-472 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1E-102 2E-107 782.9 33.3 320 91-413 1-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 3.5E-87 7.6E-92 643.1 12.4 285 100-421 1-285 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 1.9E-52 4.1E-57 420.1 22.3 234 92-354 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 2.7E-50 5.9E-55 366.4 13.1 157 244-401 1-157 (157)
20 PRK04207 glyceraldehyde-3-phos 100.0 7.4E-46 1.6E-50 374.8 22.6 260 89-378 1-273 (341)
21 PF00044 Gp_dh_N: Glyceraldehy 100.0 3.6E-45 7.7E-50 330.8 13.1 149 90-239 1-151 (151)
22 PRK06901 aspartate-semialdehyd 100.0 6.5E-41 1.4E-45 333.4 21.2 231 89-354 3-255 (322)
23 smart00846 Gp_dh_N Glyceraldeh 100.0 6.3E-41 1.4E-45 302.6 17.3 148 90-239 1-149 (149)
24 PRK14874 aspartate-semialdehyd 100.0 1.5E-38 3.2E-43 320.7 21.1 229 90-352 2-268 (334)
25 COG0136 Asd Aspartate-semialde 100.0 9.9E-38 2.1E-42 311.4 21.7 292 90-415 2-330 (334)
26 TIGR01296 asd_B aspartate-semi 100.0 9.1E-38 2E-42 315.7 20.0 231 91-353 1-272 (339)
27 TIGR01745 asd_gamma aspartate- 100.0 1.6E-37 3.5E-42 315.0 18.5 237 90-353 1-298 (366)
28 PRK06728 aspartate-semialdehyd 100.0 9.2E-36 2E-40 301.2 22.2 233 90-353 6-277 (347)
29 PRK06598 aspartate-semialdehyd 100.0 3.8E-35 8.2E-40 298.5 20.8 235 90-353 2-300 (369)
30 PRK08040 putative semialdehyde 100.0 4.7E-32 1E-36 273.6 26.1 233 88-352 3-267 (336)
31 PRK08664 aspartate-semialdehyd 100.0 7.2E-31 1.6E-35 266.2 23.8 241 87-354 1-268 (349)
32 TIGR00978 asd_EA aspartate-sem 100.0 6.7E-31 1.5E-35 265.7 22.0 255 90-371 1-282 (341)
33 PRK05671 aspartate-semialdehyd 100.0 4E-30 8.6E-35 259.8 24.9 235 89-353 4-269 (336)
34 PLN02383 aspartate semialdehyd 100.0 1.6E-29 3.5E-34 256.1 21.2 232 89-352 7-276 (344)
35 PRK00436 argC N-acetyl-gamma-g 99.9 5.4E-26 1.2E-30 230.3 24.0 238 88-355 1-266 (343)
36 PLN02968 Probable N-acetyl-gam 99.9 4.5E-25 9.8E-30 226.5 22.8 254 75-360 26-310 (381)
37 TIGR01850 argC N-acetyl-gamma- 99.9 3.9E-25 8.4E-30 224.3 19.8 235 90-355 1-269 (346)
38 PRK11863 N-acetyl-gamma-glutam 99.9 5.1E-24 1.1E-28 213.3 19.3 225 88-361 1-245 (313)
39 KOG4777 Aspartate-semialdehyde 99.9 7.9E-24 1.7E-28 203.3 9.2 238 91-355 5-279 (361)
40 TIGR01851 argC_other N-acetyl- 99.9 5.9E-21 1.3E-25 190.6 17.2 225 90-361 2-246 (310)
41 COG0002 ArgC Acetylglutamate s 99.7 5.4E-16 1.2E-20 155.9 18.9 283 88-404 1-318 (349)
42 PRK08300 acetaldehyde dehydrog 99.6 7.1E-15 1.5E-19 146.7 13.7 152 89-269 4-160 (302)
43 TIGR03215 ac_ald_DH_ac acetald 99.4 2E-12 4.4E-17 128.4 9.3 150 90-270 2-155 (285)
44 PF01118 Semialdhyde_dh: Semia 99.1 2.9E-11 6.3E-16 104.9 4.0 113 91-228 1-119 (121)
45 PF02774 Semialdhyde_dhC: Semi 99.0 1.1E-09 2.4E-14 102.1 8.4 104 248-352 1-132 (184)
46 KOG4354 N-acetyl-gamma-glutamy 98.8 1.4E-07 3.1E-12 91.3 15.5 284 89-411 19-317 (340)
47 smart00859 Semialdhyde_dh Semi 98.3 1.6E-06 3.5E-11 74.9 6.5 111 91-227 1-120 (122)
48 TIGR01921 DAP-DH diaminopimela 97.9 0.00016 3.5E-09 73.4 14.1 88 89-209 3-90 (324)
49 PRK13303 L-aspartate dehydroge 97.9 3E-05 6.4E-10 76.4 8.5 90 90-208 2-91 (265)
50 PRK13301 putative L-aspartate 97.9 2.6E-05 5.6E-10 77.1 7.8 140 88-266 1-147 (267)
51 COG1712 Predicted dinucleotide 97.6 0.00018 3.9E-09 69.5 8.1 143 90-269 1-148 (255)
52 PRK06270 homoserine dehydrogen 97.5 0.00033 7.2E-09 71.5 8.7 35 88-122 1-44 (341)
53 PRK06349 homoserine dehydrogen 97.5 0.00015 3.3E-09 76.1 5.6 94 88-211 2-105 (426)
54 TIGR00036 dapB dihydrodipicoli 97.5 0.00021 4.6E-09 70.5 6.1 95 90-208 2-97 (266)
55 PRK13302 putative L-aspartate 97.4 0.00052 1.1E-08 67.9 8.7 91 87-206 4-95 (271)
56 PF01113 DapB_N: Dihydrodipico 97.4 0.00034 7.4E-09 61.2 5.9 92 90-204 1-93 (124)
57 PRK13304 L-aspartate dehydroge 97.4 0.00068 1.5E-08 66.8 8.5 89 90-208 2-91 (265)
58 PRK00048 dihydrodipicolinate r 97.3 0.0021 4.5E-08 63.1 11.1 86 90-206 2-88 (257)
59 COG0289 DapB Dihydrodipicolina 97.2 0.0014 3E-08 64.7 8.6 97 88-207 1-98 (266)
60 PF01408 GFO_IDH_MocA: Oxidore 97.1 0.0015 3.3E-08 55.3 6.4 94 90-212 1-95 (120)
61 PRK08374 homoserine dehydrogen 97.0 0.0016 3.4E-08 66.6 6.7 102 88-203 1-116 (336)
62 PRK11579 putative oxidoreducta 96.9 0.0039 8.4E-08 63.3 9.4 93 89-212 4-97 (346)
63 PLN02696 1-deoxy-D-xylulose-5- 96.8 0.011 2.4E-07 62.6 11.7 112 90-210 58-180 (454)
64 PRK06813 homoserine dehydrogen 96.7 0.0024 5.3E-08 65.6 5.4 34 88-121 1-43 (346)
65 PLN02775 Probable dihydrodipic 96.6 0.007 1.5E-07 60.6 8.1 97 88-208 10-110 (286)
66 PRK06392 homoserine dehydrogen 96.6 0.0048 1E-07 62.9 7.1 33 90-122 1-40 (326)
67 COG0460 ThrA Homoserine dehydr 96.4 0.0088 1.9E-07 61.1 7.2 36 87-122 1-45 (333)
68 PRK05447 1-deoxy-D-xylulose 5- 96.3 0.017 3.7E-07 60.2 9.0 112 90-210 2-122 (385)
69 PF03447 NAD_binding_3: Homose 96.3 0.0034 7.3E-08 53.8 3.2 78 96-203 1-84 (117)
70 COG4569 MhpF Acetaldehyde dehy 96.2 0.02 4.3E-07 55.0 8.3 71 177-251 70-142 (310)
71 PRK10206 putative oxidoreducta 96.0 0.019 4.1E-07 58.6 7.6 95 89-212 1-97 (344)
72 cd01076 NAD_bind_1_Glu_DH NAD( 96.0 0.1 2.3E-06 50.5 12.0 35 87-122 29-63 (227)
73 COG0673 MviM Predicted dehydro 95.8 0.037 8.1E-07 55.1 8.5 98 87-212 1-100 (342)
74 PRK09414 glutamate dehydrogena 95.7 0.057 1.2E-06 57.4 9.6 98 89-205 232-339 (445)
75 cd05313 NAD_bind_2_Glu_DH NAD( 95.4 0.15 3.3E-06 50.4 11.0 101 89-204 38-148 (254)
76 PLN02700 homoserine dehydrogen 95.1 0.038 8.2E-07 57.5 6.0 35 87-121 1-43 (377)
77 COG4091 Predicted homoserine d 94.9 0.042 9.2E-07 56.5 5.4 95 89-190 17-113 (438)
78 TIGR02130 dapB_plant dihydrodi 94.8 0.093 2E-06 52.4 7.6 91 90-207 1-98 (275)
79 cd05211 NAD_bind_Glu_Leu_Phe_V 94.6 0.52 1.1E-05 45.4 12.0 35 87-122 21-55 (217)
80 PF05368 NmrA: NmrA-like famil 94.5 0.069 1.5E-06 50.5 5.6 95 92-210 1-102 (233)
81 PTZ00079 NADP-specific glutama 93.7 0.38 8.2E-06 51.3 9.7 103 89-206 237-349 (454)
82 PRK05472 redox-sensing transcr 93.6 0.19 4.1E-06 47.8 6.7 95 90-212 85-180 (213)
83 PF13460 NAD_binding_10: NADH( 93.6 0.11 2.5E-06 46.8 4.9 29 92-121 1-30 (183)
84 KOG1203 Predicted dehydrogenas 93.5 0.8 1.7E-05 48.3 11.5 31 89-120 79-110 (411)
85 COG2344 AT-rich DNA-binding pr 93.4 0.19 4.2E-06 47.7 6.2 95 90-212 85-180 (211)
86 PRK11880 pyrroline-5-carboxyla 93.4 0.27 5.8E-06 47.8 7.5 24 88-111 1-24 (267)
87 PRK09436 thrA bifunctional asp 93.4 0.13 2.8E-06 58.7 6.0 34 88-121 464-505 (819)
88 CHL00194 ycf39 Ycf39; Provisio 93.2 0.42 9.1E-06 47.6 8.7 30 91-121 2-32 (317)
89 PRK09466 metL bifunctional asp 93.1 0.067 1.5E-06 60.8 3.3 35 87-121 456-499 (810)
90 PF02826 2-Hacid_dh_C: D-isome 93.1 0.12 2.7E-06 47.6 4.4 31 90-121 37-67 (178)
91 PLN02477 glutamate dehydrogena 92.7 1.2 2.5E-05 47.1 11.5 33 89-122 206-238 (410)
92 PF00056 Ldh_1_N: lactate/mala 92.7 0.48 1E-05 42.4 7.5 79 90-190 1-81 (141)
93 PRK14030 glutamate dehydrogena 92.4 1 2.2E-05 48.1 10.6 104 89-206 228-340 (445)
94 PLN02819 lysine-ketoglutarate 92.3 0.41 9E-06 55.9 8.2 94 90-206 570-676 (1042)
95 PRK08229 2-dehydropantoate 2-r 92.3 0.94 2E-05 45.6 9.9 33 88-121 1-33 (341)
96 PF03435 Saccharop_dh: Sacchar 92.1 0.16 3.5E-06 52.1 4.2 96 92-207 1-96 (386)
97 PLN00016 RNA-binding protein; 92.0 0.39 8.4E-06 49.2 6.9 34 87-121 50-88 (378)
98 COG0111 SerA Phosphoglycerate 92.0 0.2 4.4E-06 51.1 4.7 32 89-121 142-173 (324)
99 PRK07634 pyrroline-5-carboxyla 92.0 0.45 9.8E-06 45.5 6.9 33 89-121 4-39 (245)
100 TIGR03736 PRTRC_ThiF PRTRC sys 91.9 0.31 6.7E-06 47.9 5.7 105 89-199 11-127 (244)
101 COG0569 TrkA K+ transport syst 91.8 0.42 9.1E-06 46.1 6.5 99 90-213 1-103 (225)
102 PLN02657 3,8-divinyl protochlo 91.7 0.86 1.9E-05 47.3 9.0 32 89-121 60-92 (390)
103 PRK07417 arogenate dehydrogena 91.5 0.58 1.3E-05 46.2 7.2 30 91-121 2-31 (279)
104 COG2910 Putative NADH-flavin r 91.4 1.1 2.4E-05 42.7 8.4 31 90-121 1-32 (211)
105 PRK14031 glutamate dehydrogena 91.4 1.1 2.4E-05 47.8 9.5 99 89-203 228-336 (444)
106 PRK07819 3-hydroxybutyryl-CoA 91.3 1.6 3.5E-05 43.5 10.2 147 91-256 7-179 (286)
107 COG1063 Tdh Threonine dehydrog 91.0 0.82 1.8E-05 46.8 7.9 98 91-209 171-269 (350)
108 TIGR03649 ergot_EASG ergot alk 90.9 0.47 1E-05 46.1 5.8 30 91-121 1-31 (285)
109 COG1748 LYS9 Saccharopine dehy 90.5 1.1 2.4E-05 47.0 8.4 99 90-210 2-100 (389)
110 PLN03209 translocon at the inn 90.2 1.4 3.1E-05 48.4 9.4 54 67-121 58-112 (576)
111 TIGR01761 thiaz-red thiazoliny 90.1 0.99 2.2E-05 46.5 7.7 37 89-128 3-40 (343)
112 PF02670 DXP_reductoisom: 1-de 90.0 0.66 1.4E-05 41.4 5.5 42 92-134 1-44 (129)
113 COG1087 GalE UDP-glucose 4-epi 89.8 1.2 2.5E-05 45.4 7.6 247 90-384 1-294 (329)
114 PRK11199 tyrA bifunctional cho 89.8 1.4 3E-05 45.7 8.6 30 90-120 99-129 (374)
115 PRK08410 2-hydroxyacid dehydro 89.7 0.4 8.6E-06 48.5 4.4 31 89-120 145-175 (311)
116 PRK08507 prephenate dehydrogen 89.7 1.4 3E-05 43.3 8.0 30 91-120 2-32 (275)
117 PRK06223 malate dehydrogenase; 89.5 1.6 3.4E-05 43.6 8.4 30 90-119 3-32 (307)
118 PRK06487 glycerate dehydrogena 89.4 0.44 9.5E-06 48.3 4.4 32 89-121 148-179 (317)
119 cd00755 YgdL_like Family of ac 89.3 0.83 1.8E-05 44.4 6.0 157 89-259 11-173 (231)
120 PRK07502 cyclohexadienyl dehyd 89.2 1.5 3.3E-05 43.7 8.1 32 88-119 5-37 (307)
121 PTZ00117 malate dehydrogenase; 88.8 1.5 3.3E-05 44.5 7.8 28 90-117 6-33 (319)
122 PRK06932 glycerate dehydrogena 88.6 0.55 1.2E-05 47.6 4.4 31 89-120 147-177 (314)
123 PF10727 Rossmann-like: Rossma 88.5 0.33 7.1E-06 43.1 2.4 33 89-122 10-42 (127)
124 cd05291 HicDH_like L-2-hydroxy 88.3 1.3 2.7E-05 44.5 6.8 30 91-120 2-32 (306)
125 PLN02602 lactate dehydrogenase 88.3 2 4.3E-05 44.4 8.4 147 90-263 38-203 (350)
126 cd08230 glucose_DH Glucose deh 88.3 7.1 0.00015 39.2 12.3 97 91-211 175-271 (355)
127 COG0039 Mdh Malate/lactate deh 88.3 2.4 5.1E-05 43.3 8.7 23 90-112 1-23 (313)
128 PRK00094 gpsA NAD(P)H-dependen 88.2 1.5 3.3E-05 43.5 7.3 30 90-120 2-31 (325)
129 PF03807 F420_oxidored: NADP o 87.5 1.4 3E-05 35.8 5.5 41 91-133 1-43 (96)
130 PLN02688 pyrroline-5-carboxyla 87.4 2.5 5.4E-05 41.0 8.1 32 90-121 1-35 (266)
131 COG3804 Uncharacterized conser 87.4 0.72 1.6E-05 46.5 4.3 34 88-121 1-34 (350)
132 PF03446 NAD_binding_2: NAD bi 87.4 0.8 1.7E-05 41.5 4.3 30 90-120 2-31 (163)
133 PLN02928 oxidoreductase family 87.4 0.7 1.5E-05 47.5 4.4 32 89-121 159-190 (347)
134 PF02629 CoA_binding: CoA bind 87.4 0.5 1.1E-05 39.3 2.8 92 90-211 4-95 (96)
135 cd05213 NAD_bind_Glutamyl_tRNA 87.4 2.2 4.7E-05 43.0 7.9 31 90-120 179-209 (311)
136 PLN02712 arogenate dehydrogena 87.2 1.2 2.6E-05 49.9 6.3 31 90-121 53-83 (667)
137 cd01075 NAD_bind_Leu_Phe_Val_D 87.2 3 6.4E-05 39.5 8.2 30 90-121 29-58 (200)
138 PRK07574 formate dehydrogenase 87.1 0.74 1.6E-05 48.2 4.4 31 90-121 193-223 (385)
139 cd05294 LDH-like_MDH_nadp A la 86.9 1.2 2.7E-05 44.9 5.8 31 90-120 1-33 (309)
140 PRK11559 garR tartronate semia 86.9 0.8 1.7E-05 45.2 4.4 32 88-120 1-32 (296)
141 PRK06436 glycerate dehydrogena 86.8 0.8 1.7E-05 46.3 4.4 32 89-121 122-153 (303)
142 PRK15409 bifunctional glyoxyla 86.8 0.82 1.8E-05 46.6 4.5 30 89-119 145-175 (323)
143 COG1052 LdhA Lactate dehydroge 86.5 0.85 1.8E-05 46.6 4.4 30 90-120 147-176 (324)
144 KOG2741 Dimeric dihydrodiol de 86.3 2.5 5.4E-05 43.6 7.5 99 87-211 4-104 (351)
145 TIGR02853 spore_dpaA dipicolin 86.2 1.4 3.1E-05 44.1 5.7 31 90-121 152-182 (287)
146 PRK11790 D-3-phosphoglycerate 86.0 0.91 2E-05 47.8 4.4 31 89-120 151-181 (409)
147 PLN02260 probable rhamnose bio 86.0 4.1 8.9E-05 45.1 9.8 43 85-129 376-420 (668)
148 KOG1502 Flavonol reductase/cin 85.9 3.9 8.5E-05 42.0 8.8 80 89-187 6-87 (327)
149 PRK13243 glyoxylate reductase; 85.8 0.95 2.1E-05 46.2 4.4 31 89-120 150-180 (333)
150 COG2085 Predicted dinucleotide 85.8 2.9 6.2E-05 40.4 7.3 91 90-211 2-93 (211)
151 PRK15469 ghrA bifunctional gly 85.6 1 2.2E-05 45.7 4.4 31 90-121 137-167 (312)
152 PLN02712 arogenate dehydrogena 85.5 1.3 2.7E-05 49.7 5.4 61 56-121 340-400 (667)
153 TIGR01202 bchC 2-desacetyl-2-h 85.3 4.5 9.8E-05 40.1 8.8 82 91-206 147-228 (308)
154 PRK12480 D-lactate dehydrogena 85.1 1.1 2.4E-05 45.8 4.4 30 90-120 147-176 (330)
155 TIGR01035 hemA glutamyl-tRNA r 85.0 1.2 2.7E-05 46.8 4.8 32 90-121 181-212 (417)
156 PLN02256 arogenate dehydrogena 84.9 1.2 2.6E-05 45.0 4.5 34 87-121 34-67 (304)
157 PRK08306 dipicolinate synthase 84.8 2.3 5.1E-05 42.7 6.5 31 90-121 153-183 (296)
158 PLN02306 hydroxypyruvate reduc 84.7 1.2 2.6E-05 46.6 4.5 31 89-120 165-196 (386)
159 PLN02572 UDP-sulfoquinovose sy 84.6 1.9 4.2E-05 45.5 6.1 42 78-120 36-78 (442)
160 TIGR00243 Dxr 1-deoxy-D-xylulo 84.4 1.8 4E-05 45.3 5.7 112 90-210 2-124 (389)
161 PRK09880 L-idonate 5-dehydroge 84.2 6.9 0.00015 39.2 9.7 93 91-208 172-265 (343)
162 PF00208 ELFV_dehydrog: Glutam 84.2 2.3 5.1E-05 41.6 6.1 102 90-207 33-144 (244)
163 PRK15438 erythronate-4-phospha 84.0 1.3 2.8E-05 46.3 4.4 31 89-120 116-146 (378)
164 PRK12464 1-deoxy-D-xylulose 5- 83.7 2.2 4.7E-05 44.7 5.9 108 94-210 1-117 (383)
165 TIGR01915 npdG NADPH-dependent 83.7 3 6.4E-05 39.7 6.4 29 90-119 1-30 (219)
166 PTZ00082 L-lactate dehydrogena 83.5 4 8.8E-05 41.5 7.7 32 90-122 7-38 (321)
167 cd01483 E1_enzyme_family Super 83.3 1.2 2.6E-05 39.2 3.4 22 91-112 1-22 (143)
168 PLN03139 formate dehydrogenase 83.3 1.3 2.9E-05 46.3 4.2 31 89-120 199-229 (386)
169 PF13380 CoA_binding_2: CoA bi 83.2 3.7 8.1E-05 35.5 6.3 80 91-208 2-85 (116)
170 TIGR03366 HpnZ_proposed putati 82.7 10 0.00023 36.8 10.0 136 91-253 123-260 (280)
171 COG0287 TyrA Prephenate dehydr 82.4 2.1 4.5E-05 42.9 5.0 25 88-112 2-26 (279)
172 PRK00066 ldh L-lactate dehydro 82.3 6.6 0.00014 39.8 8.7 30 90-119 7-37 (315)
173 cd00401 AdoHcyase S-adenosyl-L 82.2 4.5 9.8E-05 42.8 7.6 29 90-119 203-231 (413)
174 PLN02662 cinnamyl-alcohol dehy 81.9 12 0.00025 36.8 10.1 29 91-120 6-35 (322)
175 PRK05476 S-adenosyl-L-homocyst 81.8 4.9 0.00011 42.7 7.8 29 90-119 213-241 (425)
176 PRK08818 prephenate dehydrogen 81.4 5.3 0.00012 41.6 7.8 31 89-119 4-35 (370)
177 cd05290 LDH_3 A subgroup of L- 81.4 5.1 0.00011 40.6 7.5 27 91-117 1-28 (307)
178 COG0743 Dxr 1-deoxy-D-xylulose 80.9 2.9 6.4E-05 43.5 5.5 43 90-133 2-46 (385)
179 PRK00045 hemA glutamyl-tRNA re 80.9 3.1 6.7E-05 43.8 5.9 31 90-121 183-214 (423)
180 PRK08605 D-lactate dehydrogena 80.2 2.3 5E-05 43.4 4.5 31 90-120 147-177 (332)
181 PRK00257 erythronate-4-phospha 79.8 2.3 4.9E-05 44.5 4.4 29 90-119 117-145 (381)
182 PRK15116 sulfur acceptor prote 79.5 3.3 7.1E-05 41.3 5.3 24 89-112 30-53 (268)
183 PLN00112 malate dehydrogenase 79.2 5.8 0.00012 42.4 7.3 23 89-111 100-123 (444)
184 TIGR01327 PGDH D-3-phosphoglyc 79.2 2.3 5E-05 46.1 4.4 31 90-121 139-169 (525)
185 PRK05442 malate dehydrogenase; 79.0 7.5 0.00016 39.8 7.8 22 90-111 5-27 (326)
186 PF03721 UDPG_MGDP_dh_N: UDP-g 78.6 2.5 5.4E-05 39.6 3.9 36 90-129 1-36 (185)
187 PRK13581 D-3-phosphoglycerate 78.3 2.5 5.5E-05 45.8 4.4 32 89-121 140-171 (526)
188 PLN02778 3,5-epimerase/4-reduc 77.9 6.3 0.00014 39.1 6.8 33 85-118 5-38 (298)
189 PLN00106 malate dehydrogenase 77.8 12 0.00027 38.2 9.0 27 91-117 20-48 (323)
190 COG0451 WcaG Nucleoside-diphos 77.5 8.7 0.00019 37.1 7.5 30 91-121 2-32 (314)
191 PRK13403 ketol-acid reductoiso 77.0 3 6.6E-05 42.9 4.3 32 90-122 17-48 (335)
192 cd08239 THR_DH_like L-threonin 76.9 8.9 0.00019 38.0 7.6 95 91-208 166-261 (339)
193 KOG4039 Serine/threonine kinas 76.2 10 0.00022 36.2 7.1 33 89-121 18-52 (238)
194 PRK11908 NAD-dependent epimera 75.5 3.8 8.3E-05 41.1 4.5 32 90-121 2-34 (347)
195 PRK01438 murD UDP-N-acetylmura 75.2 27 0.00058 37.0 11.0 30 90-120 17-46 (480)
196 cd08281 liver_ADH_like1 Zinc-d 75.1 18 0.00039 36.7 9.3 96 91-209 194-290 (371)
197 COG0771 MurD UDP-N-acetylmuram 74.9 16 0.00034 39.3 9.1 87 90-204 8-95 (448)
198 cd08298 CAD2 Cinnamyl alcohol 74.5 39 0.00085 33.1 11.3 86 91-208 170-255 (329)
199 PLN00203 glutamyl-tRNA reducta 74.3 12 0.00026 40.8 8.2 32 90-121 267-298 (519)
200 PF01488 Shikimate_DH: Shikima 74.2 4.2 9.1E-05 35.8 3.9 31 90-121 13-44 (135)
201 TIGR01019 sucCoAalpha succinyl 74.0 13 0.00029 37.4 7.9 86 90-208 7-93 (286)
202 TIGR03201 dearomat_had 6-hydro 73.9 32 0.00069 34.5 10.7 101 91-211 169-274 (349)
203 cd05293 LDH_1 A subgroup of L- 73.8 4.8 0.0001 40.8 4.7 30 90-119 4-34 (312)
204 cd08237 ribitol-5-phosphate_DH 73.8 14 0.00031 37.1 8.2 30 91-120 166-196 (341)
205 PLN02586 probable cinnamyl alc 73.6 16 0.00034 37.2 8.5 30 91-121 186-215 (360)
206 PRK06718 precorrin-2 dehydroge 73.4 38 0.00083 32.0 10.5 31 90-121 11-41 (202)
207 COG1062 AdhC Zn-dependent alco 73.2 10 0.00023 39.3 7.0 110 77-208 174-284 (366)
208 cd08242 MDR_like Medium chain 73.0 26 0.00056 34.2 9.7 85 91-206 158-242 (319)
209 TIGR03451 mycoS_dep_FDH mycoth 72.6 32 0.0007 34.6 10.5 31 90-121 178-209 (358)
210 PF02254 TrkA_N: TrkA-N domain 72.3 6.1 0.00013 33.0 4.3 33 92-128 1-33 (116)
211 PRK11064 wecC UDP-N-acetyl-D-m 72.2 4.7 0.0001 42.4 4.4 37 90-130 4-40 (415)
212 COG1064 AdhP Zn-dependent alco 72.2 24 0.00052 36.5 9.3 93 90-211 168-261 (339)
213 TIGR01757 Malate-DH_plant mala 72.0 17 0.00037 38.2 8.4 24 89-112 44-68 (387)
214 PRK09599 6-phosphogluconate de 71.6 5 0.00011 40.0 4.2 30 91-121 2-31 (301)
215 PRK06476 pyrroline-5-carboxyla 71.4 7.8 0.00017 37.6 5.5 22 91-112 2-23 (258)
216 PLN02427 UDP-apiose/xylose syn 71.2 5.4 0.00012 40.7 4.5 32 90-121 15-47 (386)
217 cd01337 MDH_glyoxysomal_mitoch 71.0 27 0.00057 35.6 9.3 23 90-112 1-24 (310)
218 PRK08644 thiamine biosynthesis 70.9 3 6.6E-05 39.8 2.4 24 89-112 28-51 (212)
219 cd01338 MDH_choloroplast_like 70.6 11 0.00025 38.3 6.6 23 90-112 3-26 (322)
220 PRK08618 ornithine cyclodeamin 70.6 7.7 0.00017 39.3 5.4 33 90-122 128-160 (325)
221 PRK12491 pyrroline-5-carboxyla 69.7 8.9 0.00019 38.0 5.5 33 88-120 1-36 (272)
222 PRK03659 glutathione-regulated 69.2 7.4 0.00016 42.9 5.3 39 90-132 401-439 (601)
223 PRK12490 6-phosphogluconate de 69.1 6.2 0.00013 39.4 4.3 29 91-120 2-30 (299)
224 cd08301 alcohol_DH_plants Plan 69.0 15 0.00033 37.1 7.1 31 90-121 189-220 (369)
225 TIGR02356 adenyl_thiF thiazole 69.0 2.7 5.8E-05 39.7 1.6 24 89-112 21-44 (202)
226 PRK08219 short chain dehydroge 68.9 6.5 0.00014 36.1 4.1 32 88-121 2-34 (227)
227 KOG0069 Glyoxylate/hydroxypyru 68.7 4.3 9.3E-05 41.8 3.1 25 87-111 160-184 (336)
228 cd01487 E1_ThiF_like E1_ThiF_l 68.6 2.7 5.8E-05 38.9 1.5 22 91-112 1-22 (174)
229 TIGR01505 tartro_sem_red 2-hyd 68.5 5.7 0.00012 39.2 3.9 30 91-121 1-30 (291)
230 cd00704 MDH Malate dehydrogena 68.4 15 0.00032 37.5 6.9 23 90-112 1-24 (323)
231 cd01486 Apg7 Apg7 is an E1-lik 68.3 1.9 4.2E-05 43.8 0.5 22 91-112 1-22 (307)
232 PF02737 3HCDH_N: 3-hydroxyacy 68.2 12 0.00025 34.8 5.6 28 91-119 1-28 (180)
233 TIGR00872 gnd_rel 6-phosphoglu 68.1 6.5 0.00014 39.2 4.2 29 91-120 2-30 (298)
234 PRK03562 glutathione-regulated 67.6 8.2 0.00018 42.8 5.2 36 90-129 401-436 (621)
235 PLN02695 GDP-D-mannose-3',5'-e 67.5 8.9 0.00019 39.3 5.2 31 90-121 22-53 (370)
236 PF01073 3Beta_HSD: 3-beta hyd 67.4 21 0.00045 35.4 7.6 24 94-117 2-27 (280)
237 TIGR03026 NDP-sugDHase nucleot 67.2 6.2 0.00013 41.2 4.0 29 91-120 2-30 (411)
238 PRK09496 trkA potassium transp 67.1 6.8 0.00015 40.8 4.3 30 91-121 2-31 (453)
239 PF04321 RmlD_sub_bind: RmlD s 67.0 7.8 0.00017 38.3 4.5 31 90-121 1-32 (286)
240 PRK03369 murD UDP-N-acetylmura 66.9 28 0.0006 37.3 8.9 83 90-203 13-95 (488)
241 PRK05865 hypothetical protein; 66.6 18 0.00039 41.9 7.7 30 91-121 2-32 (854)
242 PRK09424 pntA NAD(P) transhydr 66.2 59 0.0013 35.5 11.2 29 90-119 166-194 (509)
243 PRK14619 NAD(P)H-dependent gly 66.1 7.8 0.00017 38.8 4.3 29 91-120 6-34 (308)
244 cd00757 ThiF_MoeB_HesA_family 66.0 3 6.5E-05 40.0 1.3 26 87-112 19-44 (228)
245 PLN02514 cinnamyl-alcohol dehy 65.4 33 0.00071 34.7 8.8 92 91-208 183-274 (357)
246 PRK05808 3-hydroxybutyryl-CoA 64.7 8.8 0.00019 37.7 4.3 30 90-120 4-33 (282)
247 PRK06928 pyrroline-5-carboxyla 64.7 9.2 0.0002 37.8 4.5 32 90-121 2-36 (277)
248 PRK07679 pyrroline-5-carboxyla 64.4 9.5 0.00021 37.5 4.5 31 90-120 4-37 (279)
249 PRK06249 2-dehydropantoate 2-r 63.9 10 0.00022 38.0 4.7 31 89-120 5-35 (313)
250 PLN00141 Tic62-NAD(P)-related 63.9 13 0.00029 35.4 5.3 31 90-121 18-49 (251)
251 PLN02545 3-hydroxybutyryl-CoA 63.8 10 0.00023 37.5 4.7 30 90-120 5-34 (295)
252 cd08294 leukotriene_B4_DH_like 63.8 43 0.00094 32.6 9.1 94 91-208 146-240 (329)
253 PRK06988 putative formyltransf 63.7 9.1 0.0002 38.8 4.3 31 88-119 1-31 (312)
254 KOG0068 D-3-phosphoglycerate d 63.7 6.9 0.00015 40.6 3.3 29 90-119 147-175 (406)
255 PTZ00075 Adenosylhomocysteinas 63.6 9.1 0.0002 41.3 4.4 29 90-119 255-283 (476)
256 PRK00683 murD UDP-N-acetylmura 63.5 29 0.00062 36.2 8.1 82 90-204 4-85 (418)
257 KOG0455 Homoserine dehydrogena 63.4 7.7 0.00017 38.8 3.5 33 89-121 3-43 (364)
258 PLN02178 cinnamyl-alcohol dehy 63.2 30 0.00066 35.5 8.1 30 91-121 181-210 (375)
259 PLN02740 Alcohol dehydrogenase 63.0 17 0.00038 37.0 6.3 29 91-120 201-230 (381)
260 PRK15461 NADH-dependent gamma- 63.0 9.6 0.00021 38.0 4.3 30 90-120 2-31 (296)
261 cd05283 CAD1 Cinnamyl alcohol 62.9 57 0.0012 32.3 9.8 91 91-208 172-262 (337)
262 COG0702 Predicted nucleoside-d 62.8 9.1 0.0002 36.2 3.9 30 91-121 2-32 (275)
263 cd01484 E1-2_like Ubiquitin ac 62.7 7.3 0.00016 38.0 3.3 22 91-112 1-22 (234)
264 PTZ00431 pyrroline carboxylate 62.7 7.3 0.00016 38.1 3.3 23 90-112 4-26 (260)
265 PRK14618 NAD(P)H-dependent gly 62.7 10 0.00022 38.2 4.4 30 91-121 6-35 (328)
266 KOG0024 Sorbitol dehydrogenase 62.5 15 0.00033 37.9 5.5 101 85-203 166-267 (354)
267 cd08296 CAD_like Cinnamyl alco 62.3 36 0.00077 33.7 8.2 94 91-209 166-259 (333)
268 cd08255 2-desacetyl-2-hydroxye 62.2 53 0.0011 31.3 9.1 89 91-208 100-189 (277)
269 PRK06719 precorrin-2 dehydroge 61.9 88 0.0019 28.4 10.0 30 90-120 14-43 (157)
270 PRK11154 fadJ multifunctional 61.9 39 0.00084 38.2 9.2 152 90-260 310-486 (708)
271 COG0373 HemA Glutamyl-tRNA red 61.8 20 0.00044 38.0 6.5 32 90-121 179-210 (414)
272 cd08233 butanediol_DH_like (2R 61.5 70 0.0015 31.8 10.2 29 91-120 175-204 (351)
273 PRK06129 3-hydroxyacyl-CoA deh 61.4 11 0.00023 37.8 4.3 30 91-121 4-33 (308)
274 PRK05678 succinyl-CoA syntheta 61.3 36 0.00079 34.3 8.1 85 90-208 9-95 (291)
275 PRK10669 putative cation:proto 60.9 13 0.00029 40.3 5.3 38 88-129 416-453 (558)
276 PRK06444 prephenate dehydrogen 60.8 9.7 0.00021 36.2 3.7 25 90-115 1-26 (197)
277 PLN02166 dTDP-glucose 4,6-dehy 60.6 19 0.00041 38.1 6.2 31 90-121 121-152 (436)
278 TIGR02818 adh_III_F_hyde S-(hy 60.6 25 0.00053 35.8 6.8 29 91-120 188-217 (368)
279 PRK06522 2-dehydropantoate 2-r 60.4 12 0.00026 36.7 4.4 31 90-121 1-31 (304)
280 PRK15059 tartronate semialdehy 60.3 11 0.00024 37.6 4.2 28 91-119 2-29 (292)
281 PRK07530 3-hydroxybutyryl-CoA 60.2 13 0.00029 36.6 4.7 30 90-120 5-34 (292)
282 TIGR01772 MDH_euk_gproteo mala 60.2 53 0.0012 33.4 9.1 27 91-117 1-29 (312)
283 PLN02896 cinnamyl-alcohol dehy 60.1 15 0.00032 37.0 5.1 30 91-121 12-42 (353)
284 PLN02240 UDP-glucose 4-epimera 60.1 13 0.00028 37.0 4.7 32 89-121 5-37 (352)
285 TIGR02355 moeB molybdopterin s 60.0 5 0.00011 39.2 1.6 24 89-112 24-47 (240)
286 PRK07531 bifunctional 3-hydrox 59.9 12 0.00025 40.4 4.5 29 90-119 5-33 (495)
287 PF01210 NAD_Gly3P_dh_N: NAD-d 59.9 44 0.00095 30.0 7.7 87 91-196 1-87 (157)
288 TIGR02354 thiF_fam2 thiamine b 59.8 3.9 8.5E-05 38.8 0.8 25 88-112 20-44 (200)
289 PLN02986 cinnamyl-alcohol dehy 59.6 25 0.00053 34.7 6.5 30 91-121 7-37 (322)
290 PRK10083 putative oxidoreducta 59.4 44 0.00096 32.9 8.3 95 91-208 163-258 (339)
291 PLN02353 probable UDP-glucose 58.9 13 0.00028 40.1 4.6 37 90-129 2-39 (473)
292 PRK05690 molybdopterin biosynt 58.8 6.7 0.00015 38.3 2.3 24 89-112 32-55 (245)
293 PLN02494 adenosylhomocysteinas 58.2 13 0.00028 40.2 4.4 30 90-120 255-284 (477)
294 PRK09260 3-hydroxybutyryl-CoA 58.1 19 0.00042 35.5 5.4 38 91-132 3-40 (288)
295 PRK06035 3-hydroxyacyl-CoA deh 58.1 14 0.00029 36.6 4.4 29 91-120 5-33 (291)
296 cd08277 liver_alcohol_DH_like 57.9 60 0.0013 32.8 9.1 30 91-121 187-217 (365)
297 PRK05866 short chain dehydroge 57.7 23 0.0005 34.9 5.9 53 67-121 18-72 (293)
298 cd01490 Ube1_repeat2 Ubiquitin 57.5 10 0.00022 40.5 3.5 21 91-111 1-21 (435)
299 PRK05479 ketol-acid reductoiso 57.5 12 0.00027 38.4 4.0 31 90-121 18-48 (330)
300 PRK15057 UDP-glucose 6-dehydro 57.3 12 0.00027 39.0 4.1 39 91-134 2-40 (388)
301 PRK07680 late competence prote 57.2 15 0.00032 36.0 4.4 22 91-112 2-23 (273)
302 TIGR01470 cysG_Nterm siroheme 57.1 81 0.0018 29.9 9.3 29 91-120 11-39 (205)
303 PRK05708 2-dehydropantoate 2-r 56.6 14 0.00031 36.9 4.3 31 89-120 2-32 (305)
304 cd08254 hydroxyacyl_CoA_DH 6-h 56.3 98 0.0021 30.1 10.1 95 91-208 168-262 (338)
305 TIGR00936 ahcY adenosylhomocys 56.2 15 0.00032 38.9 4.4 30 90-120 196-225 (406)
306 cd08245 CAD Cinnamyl alcohol d 56.0 67 0.0014 31.4 8.9 30 91-121 165-194 (330)
307 PLN02206 UDP-glucuronate decar 55.7 14 0.00031 39.2 4.2 31 90-121 120-151 (442)
308 PRK04690 murD UDP-N-acetylmura 55.7 59 0.0013 34.7 9.0 30 90-121 9-38 (468)
309 PRK06130 3-hydroxybutyryl-CoA 55.7 18 0.00039 36.0 4.8 30 90-120 5-34 (311)
310 cd00650 LDH_MDH_like NAD-depen 55.0 31 0.00068 33.6 6.3 21 92-112 1-22 (263)
311 PRK15181 Vi polysaccharide bio 54.7 16 0.00035 36.8 4.3 31 90-121 16-47 (348)
312 cd08284 FDH_like_2 Glutathione 54.7 71 0.0015 31.4 8.9 28 91-119 170-198 (344)
313 PLN03154 putative allyl alcoho 54.6 71 0.0015 32.3 9.0 30 91-121 161-191 (348)
314 PRK05653 fabG 3-ketoacyl-(acyl 54.5 27 0.00058 32.2 5.5 32 89-121 5-37 (246)
315 cd08295 double_bond_reductase_ 54.4 76 0.0017 31.4 9.1 30 91-121 154-184 (338)
316 TIGR01759 MalateDH-SF1 malate 54.3 23 0.0005 36.2 5.3 23 90-112 4-27 (323)
317 COG0345 ProC Pyrroline-5-carbo 54.2 27 0.00058 34.9 5.7 40 90-132 2-44 (266)
318 PRK15182 Vi polysaccharide bio 54.2 14 0.00031 39.0 4.0 37 90-131 7-43 (425)
319 TIGR02825 B4_12hDH leukotriene 54.1 75 0.0016 31.2 8.9 95 91-208 141-236 (325)
320 PRK00141 murD UDP-N-acetylmura 54.0 84 0.0018 33.5 9.8 29 91-121 17-45 (473)
321 cd08263 Zn_ADH10 Alcohol dehyd 54.0 1E+02 0.0023 30.9 10.1 30 91-121 190-220 (367)
322 cd00300 LDH_like L-lactate deh 53.9 38 0.00083 33.9 6.8 22 92-113 1-22 (300)
323 TIGR02717 AcCoA-syn-alpha acet 53.9 36 0.00078 36.2 7.0 81 90-208 8-94 (447)
324 cd08300 alcohol_DH_class_III c 53.9 1.1E+02 0.0023 31.1 10.1 29 91-120 189-218 (368)
325 PRK14106 murD UDP-N-acetylmura 53.7 60 0.0013 33.9 8.5 29 90-119 6-34 (450)
326 TIGR00465 ilvC ketol-acid redu 53.3 17 0.00036 37.0 4.2 31 90-121 4-34 (314)
327 cd08235 iditol_2_DH_like L-idi 53.3 1.1E+02 0.0024 30.0 10.0 96 91-208 168-264 (343)
328 cd08269 Zn_ADH9 Alcohol dehydr 53.3 44 0.00094 32.2 7.0 96 91-208 132-228 (312)
329 PF01262 AlaDh_PNT_C: Alanine 53.1 22 0.00048 32.3 4.6 31 90-121 21-51 (168)
330 PRK10675 UDP-galactose-4-epime 53.0 18 0.00039 35.8 4.3 30 91-121 2-32 (338)
331 PRK01710 murD UDP-N-acetylmura 52.9 84 0.0018 33.3 9.5 30 90-121 15-44 (458)
332 PRK12475 thiamine/molybdopteri 52.8 7.5 0.00016 39.9 1.6 26 87-112 22-47 (338)
333 PRK14573 bifunctional D-alanyl 52.4 63 0.0014 36.9 9.0 30 91-122 6-36 (809)
334 COG0621 MiaB 2-methylthioadeni 52.4 17 0.00036 38.9 4.1 62 193-271 180-241 (437)
335 PRK12921 2-dehydropantoate 2-r 52.3 18 0.00039 35.5 4.1 30 90-120 1-30 (305)
336 cd08234 threonine_DH_like L-th 52.0 1.1E+02 0.0024 29.9 9.7 94 91-208 162-256 (334)
337 TIGR01181 dTDP_gluc_dehyt dTDP 52.0 17 0.00037 35.0 3.9 31 91-121 1-33 (317)
338 PRK09987 dTDP-4-dehydrorhamnos 51.8 19 0.0004 35.6 4.2 29 91-121 2-31 (299)
339 PRK06545 prephenate dehydrogen 51.7 19 0.0004 37.1 4.2 28 91-118 2-30 (359)
340 cd08231 MDR_TM0436_like Hypoth 51.7 1.1E+02 0.0023 30.7 9.7 30 91-121 180-210 (361)
341 PRK06153 hypothetical protein; 51.5 7.6 0.00017 40.9 1.4 30 90-119 177-206 (393)
342 PRK09291 short chain dehydroge 51.4 24 0.00051 33.2 4.7 33 88-121 1-34 (257)
343 PRK10309 galactitol-1-phosphat 51.1 41 0.0009 33.5 6.6 29 91-120 163-192 (347)
344 PRK06046 alanine dehydrogenase 50.9 21 0.00046 36.2 4.5 33 90-122 130-162 (326)
345 cd01336 MDH_cytoplasmic_cytoso 50.7 23 0.00049 36.2 4.6 30 90-119 3-39 (325)
346 TIGR01214 rmlD dTDP-4-dehydror 50.6 20 0.00044 34.4 4.1 30 91-121 1-31 (287)
347 PF12953 DUF3842: Domain of un 50.6 1.3E+02 0.0029 27.1 8.8 90 91-208 1-102 (131)
348 cd05292 LDH_2 A subgroup of L- 50.4 20 0.00042 36.2 4.1 23 90-112 1-23 (308)
349 PRK08125 bifunctional UDP-gluc 50.1 20 0.00044 39.8 4.5 32 90-121 316-348 (660)
350 cd08236 sugar_DH NAD(P)-depend 50.0 64 0.0014 31.8 7.7 95 91-208 162-257 (343)
351 cd01065 NAD_bind_Shikimate_DH 50.0 26 0.00057 30.6 4.5 31 90-121 20-50 (155)
352 cd05191 NAD_bind_amino_acid_DH 50.0 31 0.00067 27.7 4.5 22 90-111 24-45 (86)
353 PRK05597 molybdopterin biosynt 49.9 8.4 0.00018 39.7 1.4 25 88-112 27-51 (355)
354 cd08293 PTGR2 Prostaglandin re 49.9 52 0.0011 32.5 7.0 95 91-208 157-253 (345)
355 PRK00421 murC UDP-N-acetylmura 49.8 79 0.0017 33.4 8.8 29 91-121 9-38 (461)
356 COG1893 ApbA Ketopantoate redu 49.6 77 0.0017 32.1 8.2 23 90-112 1-23 (307)
357 cd05280 MDR_yhdh_yhfp Yhdh and 49.5 85 0.0018 30.4 8.4 88 91-203 149-237 (325)
358 PRK08655 prephenate dehydrogen 49.5 21 0.00045 37.9 4.3 29 91-120 2-31 (437)
359 PLN02827 Alcohol dehydrogenase 49.4 51 0.0011 33.7 7.1 30 90-120 195-225 (378)
360 PF01370 Epimerase: NAD depend 49.4 25 0.00054 32.4 4.4 29 92-121 1-30 (236)
361 TIGR01381 E1_like_apg7 E1-like 49.4 8.4 0.00018 43.1 1.4 23 90-112 339-361 (664)
362 TIGR03466 HpnA hopanoid-associ 49.4 20 0.00044 34.9 3.9 30 91-121 2-32 (328)
363 TIGR01087 murD UDP-N-acetylmur 49.1 83 0.0018 32.7 8.7 29 91-121 1-29 (433)
364 PLN00198 anthocyanidin reducta 49.0 24 0.00053 35.1 4.5 31 89-120 9-40 (338)
365 PRK14194 bifunctional 5,10-met 49.0 66 0.0014 32.8 7.6 31 90-121 160-191 (301)
366 cd08292 ETR_like_2 2-enoyl thi 49.0 1.1E+02 0.0024 29.6 9.1 30 91-121 142-172 (324)
367 PRK05600 thiamine biosynthesis 48.9 6.6 0.00014 40.8 0.5 25 88-112 40-64 (370)
368 PTZ00142 6-phosphogluconate de 48.7 20 0.00042 38.7 4.0 40 90-133 2-41 (470)
369 cd08289 MDR_yhfp_like Yhfp put 48.2 57 0.0012 31.7 7.0 93 91-208 149-242 (326)
370 PRK03806 murD UDP-N-acetylmura 48.2 1.2E+02 0.0026 31.7 9.7 87 90-209 7-94 (438)
371 cd08262 Zn_ADH8 Alcohol dehydr 48.1 1.4E+02 0.003 29.4 9.8 39 91-132 164-202 (341)
372 KOG2380 Prephenate dehydrogena 48.1 20 0.00044 37.4 3.7 25 89-113 52-76 (480)
373 TIGR02437 FadB fatty oxidation 47.7 36 0.00079 38.5 6.1 28 91-119 315-342 (714)
374 smart00833 CobW_C Cobalamin sy 47.6 33 0.00071 27.4 4.3 50 330-379 2-55 (92)
375 PRK07066 3-hydroxybutyryl-CoA 47.6 25 0.00054 36.0 4.4 28 91-119 9-36 (321)
376 TIGR01763 MalateDH_bact malate 47.5 26 0.00057 35.3 4.5 30 90-119 2-31 (305)
377 PRK08017 oxidoreductase; Provi 47.4 29 0.00062 32.6 4.5 31 90-121 3-34 (256)
378 PRK09496 trkA potassium transp 47.4 25 0.00054 36.6 4.5 31 90-121 232-262 (453)
379 PRK10084 dTDP-glucose 4,6 dehy 47.3 24 0.00051 35.2 4.2 30 91-120 2-32 (352)
380 PRK08293 3-hydroxybutyryl-CoA 47.3 26 0.00056 34.6 4.4 30 90-120 4-33 (287)
381 cd08278 benzyl_alcohol_DH Benz 46.8 1.5E+02 0.0032 30.0 9.9 95 91-208 189-284 (365)
382 cd01339 LDH-like_MDH L-lactate 46.6 39 0.00084 33.7 5.5 28 92-119 1-28 (300)
383 cd05188 MDR Medium chain reduc 46.5 1.6E+02 0.0034 27.3 9.4 30 91-121 137-166 (271)
384 PRK07877 hypothetical protein; 45.9 10 0.00022 43.1 1.3 118 89-211 107-228 (722)
385 PRK02318 mannitol-1-phosphate 45.8 22 0.00048 36.8 3.8 31 90-120 1-31 (381)
386 cd08260 Zn_ADH6 Alcohol dehydr 45.7 69 0.0015 31.7 7.2 30 91-121 168-197 (345)
387 cd05288 PGDH Prostaglandin deh 45.2 1.1E+02 0.0024 29.7 8.5 30 91-121 148-178 (329)
388 PRK08223 hypothetical protein; 45.1 22 0.00047 36.0 3.4 24 89-112 27-50 (287)
389 PRK07326 short chain dehydroge 45.0 32 0.00069 31.9 4.4 31 90-121 7-38 (237)
390 PLN02214 cinnamoyl-CoA reducta 44.5 31 0.00066 34.8 4.5 31 90-121 11-42 (342)
391 PRK10217 dTDP-glucose 4,6-dehy 44.4 27 0.00058 34.9 4.0 31 90-121 2-33 (355)
392 cd08285 NADP_ADH NADP(H)-depen 44.1 2.1E+02 0.0046 28.4 10.4 30 90-120 168-198 (351)
393 PLN02702 L-idonate 5-dehydroge 44.1 64 0.0014 32.4 6.8 99 91-208 184-284 (364)
394 COG0334 GdhA Glutamate dehydro 44.1 30 0.00065 36.7 4.4 32 90-122 208-239 (411)
395 TIGR01751 crot-CoA-red crotony 43.8 1.6E+02 0.0034 30.2 9.6 29 91-120 192-221 (398)
396 cd08287 FDH_like_ADH3 formalde 43.8 3.3E+02 0.0071 26.8 12.3 98 91-210 171-269 (345)
397 KOG0022 Alcohol dehydrogenase, 43.6 52 0.0011 34.1 5.8 92 91-204 195-288 (375)
398 PRK07023 short chain dehydroge 43.4 32 0.00069 32.2 4.2 30 90-120 2-32 (243)
399 cd08270 MDR4 Medium chain dehy 43.4 2.6E+02 0.0056 26.7 10.6 86 91-208 135-221 (305)
400 PRK07688 thiamine/molybdopteri 43.3 14 0.0003 38.0 1.8 34 87-121 22-56 (339)
401 PRK04663 murD UDP-N-acetylmura 42.9 1.3E+02 0.0029 31.5 9.1 84 90-203 8-93 (438)
402 cd08252 AL_MDR Arginate lyase 42.7 88 0.0019 30.5 7.3 95 91-208 152-247 (336)
403 TIGR02819 fdhA_non_GSH formald 42.7 58 0.0013 33.8 6.3 30 91-121 188-217 (393)
404 PRK14806 bifunctional cyclohex 42.7 31 0.00068 38.7 4.6 33 88-120 2-35 (735)
405 COG0677 WecC UDP-N-acetyl-D-ma 42.6 26 0.00056 37.2 3.6 31 88-119 8-38 (436)
406 PF00070 Pyr_redox: Pyridine n 42.5 48 0.001 25.9 4.5 28 91-119 1-28 (80)
407 PF02192 PI3K_p85B: PI3-kinase 42.2 50 0.0011 27.0 4.5 40 332-371 2-42 (78)
408 PRK03803 murD UDP-N-acetylmura 42.0 1.2E+02 0.0025 31.9 8.5 29 91-121 8-36 (448)
409 PLN02583 cinnamoyl-CoA reducta 41.9 42 0.00092 33.0 4.9 30 91-121 8-38 (297)
410 PRK12825 fabG 3-ketoacyl-(acyl 41.8 44 0.00094 30.8 4.8 29 90-119 7-36 (249)
411 cd08238 sorbose_phosphate_red 41.8 1.8E+02 0.004 30.0 9.8 33 177-209 256-288 (410)
412 PTZ00345 glycerol-3-phosphate 41.7 74 0.0016 33.2 6.8 22 90-111 12-33 (365)
413 TIGR00518 alaDH alanine dehydr 41.7 34 0.00073 35.5 4.3 30 90-120 168-197 (370)
414 cd08286 FDH_like_ADH2 formalde 41.6 2E+02 0.0043 28.4 9.7 30 91-120 169-198 (345)
415 cd05279 Zn_ADH1 Liver alcohol 41.6 1.2E+02 0.0026 30.6 8.3 96 91-208 186-284 (365)
416 cd05284 arabinose_DH_like D-ar 41.5 95 0.0021 30.5 7.4 31 91-121 170-200 (340)
417 COG5322 Predicted dehydrogenas 41.4 1E+02 0.0022 31.5 7.3 62 178-242 230-292 (351)
418 PLN02260 probable rhamnose bio 41.3 31 0.00068 38.2 4.3 32 90-121 7-40 (668)
419 PTZ00325 malate dehydrogenase; 41.3 47 0.001 34.0 5.2 23 90-112 9-32 (321)
420 PRK08132 FAD-dependent oxidore 41.1 49 0.0011 35.7 5.7 34 85-119 19-52 (547)
421 PRK12826 3-ketoacyl-(acyl-carr 40.9 40 0.00086 31.3 4.4 32 89-121 6-38 (251)
422 cd01489 Uba2_SUMO Ubiquitin ac 40.7 20 0.00044 36.5 2.5 22 91-112 1-22 (312)
423 cd08259 Zn_ADH5 Alcohol dehydr 40.5 1.2E+02 0.0026 29.3 7.8 30 91-121 165-195 (332)
424 PRK15076 alpha-galactosidase; 40.1 31 0.00067 36.7 3.9 13 90-102 2-14 (431)
425 TIGR00507 aroE shikimate 5-deh 40.1 1E+02 0.0022 30.2 7.2 30 91-121 119-148 (270)
426 PF00670 AdoHcyase_NAD: S-aden 39.9 44 0.00096 31.0 4.3 30 90-121 24-53 (162)
427 PRK06947 glucose-1-dehydrogena 39.8 41 0.00089 31.4 4.3 31 88-119 1-32 (248)
428 PRK02006 murD UDP-N-acetylmura 39.7 1.5E+02 0.0032 31.7 9.0 28 91-119 9-36 (498)
429 PF07683 CobW_C: Cobalamin syn 39.5 39 0.00086 27.2 3.6 50 330-379 2-54 (94)
430 TIGR02822 adh_fam_2 zinc-bindi 39.4 3.6E+02 0.0078 26.8 11.3 87 91-209 168-254 (329)
431 PRK14188 bifunctional 5,10-met 39.4 1E+02 0.0023 31.2 7.3 30 90-120 159-189 (296)
432 cd08232 idonate-5-DH L-idonate 39.1 2.2E+02 0.0049 27.9 9.6 29 91-120 168-197 (339)
433 cd08246 crotonyl_coA_red croto 39.0 1.8E+02 0.004 29.5 9.2 29 91-120 196-225 (393)
434 cd08240 6_hydroxyhexanoate_dh_ 38.9 86 0.0019 31.1 6.7 90 91-203 178-268 (350)
435 PRK10538 malonic semialdehyde 38.8 43 0.00094 31.5 4.3 30 91-121 2-32 (248)
436 cd08258 Zn_ADH4 Alcohol dehydr 38.6 3.3E+02 0.0072 26.6 10.7 138 91-253 167-305 (306)
437 cd08261 Zn_ADH7 Alcohol dehydr 38.6 2.8E+02 0.006 27.2 10.2 30 91-121 162-191 (337)
438 PRK14175 bifunctional 5,10-met 38.5 1.2E+02 0.0026 30.7 7.5 27 90-117 159-186 (286)
439 PF00107 ADH_zinc_N: Zinc-bind 38.5 13 0.00029 31.3 0.6 91 100-212 2-92 (130)
440 PRK12320 hypothetical protein; 38.4 39 0.00086 38.3 4.5 30 91-121 2-32 (699)
441 PRK07411 hypothetical protein; 38.3 15 0.00032 38.4 1.1 24 89-112 38-61 (390)
442 PRK12745 3-ketoacyl-(acyl-carr 37.9 49 0.0011 31.0 4.5 33 88-121 1-34 (256)
443 PRK02472 murD UDP-N-acetylmura 37.9 1.5E+02 0.0033 30.8 8.6 29 91-121 7-35 (447)
444 COG1179 Dinucleotide-utilizing 37.9 75 0.0016 31.7 5.8 31 91-121 32-72 (263)
445 PRK08268 3-hydroxy-acyl-CoA de 37.8 64 0.0014 35.0 5.9 38 90-131 8-45 (507)
446 PRK08328 hypothetical protein; 37.2 28 0.0006 33.6 2.7 24 89-112 27-50 (231)
447 PRK05086 malate dehydrogenase; 37.1 46 0.001 33.7 4.4 21 90-110 1-22 (312)
448 PRK08762 molybdopterin biosynt 36.9 21 0.00046 36.9 2.0 25 88-112 134-158 (376)
449 TIGR00873 gnd 6-phosphoglucona 36.8 35 0.00075 36.7 3.6 39 91-133 1-39 (467)
450 TIGR00715 precor6x_red precorr 36.8 31 0.00067 34.1 3.0 73 90-189 1-76 (256)
451 COG0240 GpsA Glycerol-3-phosph 36.8 1E+02 0.0022 31.8 6.8 23 90-112 2-24 (329)
452 cd08279 Zn_ADH_class_III Class 36.6 2.4E+02 0.0052 28.3 9.5 30 91-121 185-215 (363)
453 PRK05565 fabG 3-ketoacyl-(acyl 36.5 56 0.0012 30.2 4.6 31 88-119 4-35 (247)
454 TIGR01472 gmd GDP-mannose 4,6- 36.4 44 0.00096 33.3 4.2 30 91-121 2-32 (343)
455 TIGR01179 galE UDP-glucose-4-e 36.4 45 0.00098 32.2 4.1 29 91-120 1-30 (328)
456 PRK14192 bifunctional 5,10-met 36.3 1.3E+02 0.0028 30.2 7.4 26 90-116 160-186 (283)
457 TIGR01777 yfcH conserved hypot 36.2 36 0.00079 32.5 3.4 29 92-121 1-30 (292)
458 TIGR00561 pntA NAD(P) transhyd 36.1 1.3E+02 0.0029 32.9 7.9 29 90-119 165-193 (511)
459 cd05285 sorbitol_DH Sorbitol d 35.9 3.2E+02 0.0069 27.0 10.2 29 91-120 165-194 (343)
460 COG1023 Gnd Predicted 6-phosph 35.9 61 0.0013 32.5 4.8 43 90-136 1-43 (300)
461 PLN02650 dihydroflavonol-4-red 35.6 55 0.0012 32.8 4.7 29 91-120 7-36 (351)
462 PRK12827 short chain dehydroge 35.0 56 0.0012 30.2 4.4 31 89-120 6-37 (249)
463 TIGR01771 L-LDH-NAD L-lactate 34.9 82 0.0018 31.7 5.8 24 94-117 1-25 (299)
464 cd05212 NAD_bind_m-THF_DH_Cycl 34.5 1.9E+02 0.0041 26.0 7.4 29 90-119 29-58 (140)
465 PRK07236 hypothetical protein; 34.2 57 0.0012 33.2 4.6 33 87-120 4-36 (386)
466 PRK14620 NAD(P)H-dependent gly 34.1 54 0.0012 32.8 4.4 26 91-117 2-27 (326)
467 PRK11150 rfaD ADP-L-glycero-D- 34.0 49 0.0011 32.3 4.0 29 92-121 2-31 (308)
468 PF00899 ThiF: ThiF family; I 33.9 50 0.0011 28.6 3.6 104 90-197 3-111 (135)
469 PRK10754 quinone oxidoreductas 33.9 83 0.0018 30.7 5.6 30 91-121 143-173 (327)
470 PF02558 ApbA: Ketopantoate re 33.7 64 0.0014 28.1 4.3 29 92-121 1-29 (151)
471 PRK07878 molybdopterin biosynt 33.7 21 0.00046 37.2 1.4 25 88-112 41-65 (392)
472 PRK04308 murD UDP-N-acetylmura 33.6 2.9E+02 0.0063 28.9 9.9 29 90-119 6-34 (445)
473 PLN02350 phosphogluconate dehy 33.5 41 0.00089 36.5 3.5 126 90-229 7-157 (493)
474 cd05281 TDH Threonine dehydrog 33.4 3.6E+02 0.0077 26.6 10.1 28 91-119 166-194 (341)
475 KOG1399 Flavin-containing mono 33.3 39 0.00085 36.2 3.3 25 87-111 4-28 (448)
476 cd08250 Mgc45594_like Mgc45594 33.1 1E+02 0.0022 30.1 6.0 30 91-121 142-172 (329)
477 PLN02653 GDP-mannose 4,6-dehyd 33.0 65 0.0014 32.0 4.7 31 90-121 7-38 (340)
478 PRK05586 biotin carboxylase; V 32.9 53 0.0012 34.6 4.3 33 88-121 1-33 (447)
479 cd08283 FDH_like_1 Glutathione 32.7 1.3E+02 0.0029 30.6 7.1 31 91-121 187-217 (386)
480 PRK06019 phosphoribosylaminoim 32.6 62 0.0013 33.3 4.6 31 90-121 3-33 (372)
481 PRK07201 short chain dehydroge 32.2 57 0.0012 35.7 4.5 31 91-121 2-34 (657)
482 cd08256 Zn_ADH2 Alcohol dehydr 32.1 3.9E+02 0.0085 26.4 10.2 29 91-120 177-206 (350)
483 PRK07231 fabG 3-ketoacyl-(acyl 31.8 64 0.0014 30.0 4.2 30 91-121 7-37 (251)
484 COG1091 RfbD dTDP-4-dehydrorha 31.6 55 0.0012 33.0 3.9 42 91-134 2-47 (281)
485 TIGR02622 CDP_4_6_dhtase CDP-g 31.5 70 0.0015 32.1 4.7 30 90-120 5-35 (349)
486 cd01080 NAD_bind_m-THF_DH_Cycl 31.3 1.1E+02 0.0024 28.3 5.6 31 90-121 45-76 (168)
487 TIGR02279 PaaC-3OHAcCoADH 3-hy 31.3 59 0.0013 35.3 4.3 35 91-129 7-41 (503)
488 PRK12439 NAD(P)H-dependent gly 31.1 59 0.0013 33.1 4.1 23 90-112 8-30 (341)
489 PRK07074 short chain dehydroge 30.9 73 0.0016 30.0 4.5 30 90-120 3-33 (257)
490 TIGR00514 accC acetyl-CoA carb 30.8 63 0.0014 34.0 4.4 33 88-121 1-33 (449)
491 cd01492 Aos1_SUMO Ubiquitin ac 30.8 44 0.00096 31.5 2.9 24 89-112 21-44 (197)
492 PRK07364 2-octaprenyl-6-methox 30.5 96 0.0021 31.6 5.6 32 88-120 17-48 (415)
493 PRK06180 short chain dehydroge 30.5 76 0.0017 30.5 4.6 31 90-121 5-36 (277)
494 PRK07024 short chain dehydroge 30.2 77 0.0017 30.0 4.5 31 89-120 2-33 (257)
495 TIGR01408 Ube1 ubiquitin-activ 29.9 42 0.00091 39.6 3.1 23 89-111 419-441 (1008)
496 TIGR03376 glycerol3P_DH glycer 29.8 1.5E+02 0.0032 30.6 6.7 21 91-111 1-21 (342)
497 TIGR01746 Thioester-redct thio 29.7 66 0.0014 31.5 4.1 31 91-121 1-33 (367)
498 cd08248 RTN4I1 Human Reticulon 29.6 1.9E+02 0.004 28.5 7.3 30 91-121 165-195 (350)
499 TIGR03570 NeuD_NnaD sugar O-ac 29.5 79 0.0017 28.4 4.3 30 91-121 1-30 (201)
500 cd01485 E1-1_like Ubiquitin ac 29.4 38 0.00083 31.9 2.2 24 89-112 19-42 (198)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-118 Score=897.29 Aligned_cols=337 Identities=58% Similarity=0.952 Sum_probs=322.5
Q ss_pred CCceeEEEEccChHHHHHHHHHHcC----CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEe-------CCCeEE
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFR----DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVV-------DDSTLE 155 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~----~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~-------~~~~l~ 155 (425)
+|++||||||||||||.++|+++++ ++++||||||++.++++++|||||||+||+|+++++.+ +++.|.
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 4678999999999999999998875 57999999998789999999999999999999999872 356899
Q ss_pred ECCEEEEEE-ecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC-CCcEEeecCccccCC-CCc
Q 014424 156 INGKLIKVF-SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKP-NMN 232 (425)
Q Consensus 156 i~Gk~I~v~-~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D-vp~vV~gVN~~~~~~-~~~ 232 (425)
+||++|.++ +++||+++||++.|+|||+||||.|++++++..||++||||||||+|++| .|+|||||||+.|++ .++
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCc
Confidence 999999986 99999999999999999999999999999999999999999999999987 689999999999997 578
Q ss_pred EEecCCchhhhHHhHHHHH-HhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCC
Q 014424 233 IVSNASCTTNCLAPLAKVV-HEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDL 311 (425)
Q Consensus 233 IISnaSCTTn~Lap~lk~L-~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL 311 (425)
||||+|||||||+|++|+| ||+|||++|+|||+|+||++|+++|+++.+||||+|++++||||++||++|++++|||+|
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L 240 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 240 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecccc
Confidence 9999999999999999999 799999999999999999999999999558999999999999999999999999999999
Q ss_pred CCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCccccc
Q 014424 312 NGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLS 391 (425)
Q Consensus 312 ~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~ 391 (425)
+||++|++|||||++||++||+|+++|++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++
T Consensus 241 ~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~ 320 (361)
T PTZ00434 241 KGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQNN 320 (361)
T ss_pred CCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ----CCeEEEEEEeCCCcchhhhHHHHHHHHHHhhh
Q 014424 392 ----ASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 423 (425)
Q Consensus 392 ----~~~vKl~~WyDNE~gys~r~vdl~~~~~~~~~ 423 (425)
++|+|+++||||||||||||+||+.||++..+
T Consensus 321 ~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~~ 356 (361)
T PTZ00434 321 LPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKDA 356 (361)
T ss_pred cCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999987654
No 2
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1e-114 Score=887.82 Aligned_cols=417 Identities=86% Similarity=1.254 Sum_probs=370.9
Q ss_pred Chhhhhhhhhhhccccc---cccccCCCCcccCCcccccccccccc-ceeeccCCCCCCCCcccccccccccCccccccc
Q 014424 1 MAFSSLLRSTASASLVR---ADLTSSPSDRVKGSPTAAFSRNLNTS-SIFGTSVPSGSSSSSLQTCAAKGIQPIRATATE 76 (425)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (425)
++++..||+++.+++.. +...++...+.+. +++.+... .+.+.+ ...+.+...+....+++++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 72 (421)
T PLN02272 1 MAFSSLLRSAATAPAAAARGSDFSSSSSDPSKV-----SSVGFSSSLSFSGSS---SGASSSLQSCSARSVQPIKATATE 72 (421)
T ss_pred CccccccccccccchhccccCCCCCCCCccccc-----ccccceeeeeccccc---cccccccccccccccchhhhhhcc
Confidence 57888999888854443 2333333444444 55555432 222222 134556667777778888777777
Q ss_pred CCccccCCCCCCceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEE
Q 014424 77 IPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI 156 (425)
Q Consensus 77 ~~~~~~~~~~~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i 156 (425)
.+..+.......|+||||||||||||.++|++.++++++||+|||++.++++|+|||||||+||+|+++++..+++.|.|
T Consensus 73 ~~~~~~~~~~~~~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~ 152 (421)
T PLN02272 73 APPAVLKSSSSGKTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEI 152 (421)
T ss_pred ccccccccccccceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEE
Confidence 77766544322237999999999999999999876789999999988999999999999999999999998734668999
Q ss_pred CCEEEEEEecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccccCCCCcEEec
Q 014424 157 NGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSN 236 (425)
Q Consensus 157 ~Gk~I~v~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~~~~~~~IISn 236 (425)
+|++|.++++++|++++|++.|+||||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|+..++||||
T Consensus 153 ~G~~I~V~~~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISn 232 (421)
T PLN02272 153 NGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSN 232 (421)
T ss_pred CCEEEEEEecCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877789999
Q ss_pred CCchhhhHHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCcee
Q 014424 237 ASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLT 316 (425)
Q Consensus 237 aSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit 316 (425)
||||||||+|++|+||++|||++++|||||++|++|+++|+++.++||++|++++||||++||++++++||||+|+||++
T Consensus 233 aSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~ 312 (421)
T PLN02272 233 ASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLT 312 (421)
T ss_pred CCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEE
Confidence 99999999999999999999999999999999999999999865899999999999999999999999999999999999
Q ss_pred EEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEE
Q 014424 317 GMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMK 396 (425)
Q Consensus 317 ~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vK 396 (425)
++||||||++||++||+|++++++++|||+++|+++++++|||||+|+|+|+||+||+||+||+|||+.+|++++++|+|
T Consensus 313 gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vK 392 (421)
T PLN02272 313 GMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMK 392 (421)
T ss_pred EEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcchhhhHHHHHHHHHHhhhCC
Q 014424 397 LVSWYDNEWGYSNRVLDLIEHMALVAAHN 425 (425)
Q Consensus 397 l~~WyDNE~gys~r~vdl~~~~~~~~~~~ 425 (425)
|++||||||||||||+||+.||+...+++
T Consensus 393 v~~WYDNEwGys~R~~dl~~~~~~~~~~~ 421 (421)
T PLN02272 393 LVSWYDNEWGYSNRVLDLIEHMALVAASH 421 (421)
T ss_pred EEEEecCchhHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999998877653
No 3
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=3.6e-113 Score=877.94 Aligned_cols=335 Identities=52% Similarity=0.824 Sum_probs=322.0
Q ss_pred CCCCceeEEEEccChHHHHHHHHHHcC--CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEE
Q 014424 85 RSDGNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK 162 (425)
Q Consensus 85 ~~~m~ikVaInGfGrIGr~vlr~l~~~--~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~ 162 (425)
...|++||||||||||||.++|+++++ +++|||+|||+ .++++|+|||||||+||+|+++++..+++.|.|+|+.|.
T Consensus 71 ~~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~ 149 (442)
T PLN02237 71 ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIK 149 (442)
T ss_pred cccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEE
Confidence 334778999999999999999998865 67999999995 799999999999999999999998744668999999999
Q ss_pred EEecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC--CCcEEeecCccccCCC-CcEEecCCc
Q 014424 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPN-MNIVSNASC 239 (425)
Q Consensus 163 v~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D--vp~vV~gVN~~~~~~~-~~IISnaSC 239 (425)
++++++|.++||++.|+||||||||.|+++++++.|+++|||+|++|+|.+| +|+||||||++.|+.. ++|||||||
T Consensus 150 V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSC 229 (442)
T PLN02237 150 VVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASC 229 (442)
T ss_pred EEEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCch
Confidence 9999999999999999999999999999999999999999999999999865 7999999999999875 789999999
Q ss_pred hhhhHHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEE
Q 014424 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMA 319 (425)
Q Consensus 240 TTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~a 319 (425)
|||||+|++|+|||+|||++++|||||+||++|+++|++| +||||+|++++||||++||++|++++|||+|+||++|++
T Consensus 230 TTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A 308 (442)
T PLN02237 230 TTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIA 308 (442)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEE
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred EEeeeccceeeeEEEEecC-CCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEE
Q 014424 320 FRVPTPNVSVVDLTCRLAK-GASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLV 398 (425)
Q Consensus 320 vRVPv~~gs~~dltv~lek-~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~ 398 (425)
|||||++||++||+|+++| ++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||+
T Consensus 309 ~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~ 388 (442)
T PLN02237 309 LRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVV 388 (442)
T ss_pred EecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEE
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchhhhHHHHHHHHHHh
Q 014424 399 SWYDNEWGYSNRVLDLIEHMALV 421 (425)
Q Consensus 399 ~WyDNE~gys~r~vdl~~~~~~~ 421 (425)
+||||||||||||+||+.||++.
T Consensus 389 aWYDNEwGys~R~~dl~~~~~~~ 411 (442)
T PLN02237 389 AWYDNEWGYSQRVVDLAHLVAAK 411 (442)
T ss_pred EEeCCchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 4
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.4e-112 Score=853.44 Aligned_cols=329 Identities=69% Similarity=1.091 Sum_probs=319.0
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
|++||||||||||||.++|+++++++++||||||+ .++++|+|||||||+||+|+++++.+ ++.|.|+|+.|.+++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~~~v~~~-~~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVK-DGHLIVNGKKIRVTAER 78 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcCCcEEec-CCEEEECCeEEEEEEcC
Confidence 55799999999999999999988889999999995 89999999999999999999999986 45899999999999999
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC-CCcEEeecCccccCCCCcEEecCCchhhhHHh
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D-vp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 246 (425)
+|+++||++.|+||||||||.|++++++++|+++|||+|++|+|++| +|+||||||++.|+. ++||||||||||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 799999999999975 7899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeeecc
Q 014424 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPN 326 (425)
Q Consensus 247 ~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv~~ 326 (425)
++|+|||+|||++++|||||++|++|+++|+++.++||++|++++||||++||++++++||||+|+||++++|+||||++
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~ 237 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 237 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence 99999999999999999999999999999998658999999999999999999999999999999999999999999999
Q ss_pred ceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCCcc
Q 014424 327 VSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWG 406 (425)
Q Consensus 327 gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE~g 406 (425)
||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++|||||||
T Consensus 238 gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~g 317 (331)
T PRK15425 238 VSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETG 317 (331)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHH
Q 014424 407 YSNRVLDLIEHMA 419 (425)
Q Consensus 407 ys~r~vdl~~~~~ 419 (425)
|||||+||+.||+
T Consensus 318 ys~r~~d~~~~~~ 330 (331)
T PRK15425 318 YSNKVLDLIAHIS 330 (331)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
No 5
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-112 Score=854.72 Aligned_cols=333 Identities=67% Similarity=1.079 Sum_probs=322.1
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
|++||||||||||||.++|+++++++++||+|||++.++++++|||||||+||+|+++++.+ ++.|.+||++|++++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~-~~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVT-DGFLMIGSKKVHVFFEK 79 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEec-CCEEEECCeEEEEEeCC
Confidence 56899999999999999999998888999999998889999999999999999999999986 45899999999999999
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC-CCcEEeecCccccCCCCcEEecCCchhhhHHh
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D-vp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 246 (425)
||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|.+| +|+||||||++.|+..++||||||||||||+|
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap 159 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP 159 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 79999999999998777899999999999999
Q ss_pred HHHHHHhhcCeeEEEEEeeeecccccccccCCCC--CcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeee
Q 014424 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSM--KDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPT 324 (425)
Q Consensus 247 ~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~--kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv 324 (425)
++|+||++|||++++|||||++|++|.++||++. +|||++|++++||||++||++++++||||+|+||++++|+||||
T Consensus 160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt 239 (337)
T PTZ00023 160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPV 239 (337)
T ss_pred HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecc
Confidence 9999999999999999999999999999999852 79999999999999999999999999999999999999999999
Q ss_pred ccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCC
Q 014424 325 PNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 404 (425)
Q Consensus 325 ~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE 404 (425)
++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+||+||+|||+.+|++++++|+|+++|||||
T Consensus 240 ~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE 319 (337)
T PTZ00023 240 PDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNE 319 (337)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHh
Q 014424 405 WGYSNRVLDLIEHMALV 421 (425)
Q Consensus 405 ~gys~r~vdl~~~~~~~ 421 (425)
|||||||+||+.||+++
T Consensus 320 ~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 320 WGYSNRLLDLAHYITQK 336 (337)
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 99999999999999754
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-111 Score=847.65 Aligned_cols=330 Identities=50% Similarity=0.829 Sum_probs=318.6
Q ss_pred ceeEEEEccChHHHHHHHHHHcC--CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~--~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
|+||||||||||||+++|+++++ ++++||+|||+ .++++++|||||||+||+|+++++.+ ++.|.|||++|.++++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~~~v~~~-~~~l~v~g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLNADISAD-ENSITVNGKTIKCVSD 78 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCCCcEEEc-CCEEEECCEEEEEEEc
Confidence 36999999999999999998876 57999999995 79999999999999999999999986 5689999999999999
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC--CCcEEeecCccccCC-CCcEEecCCchhhh
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKP-NMNIVSNASCTTNC 243 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D--vp~vV~gVN~~~~~~-~~~IISnaSCTTn~ 243 (425)
+||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|.+| +|++|||||++.|++ .++|||||||||||
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 999999999999999999999999999999999999999999999754 699999999999985 47899999999999
Q ss_pred HHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEee
Q 014424 244 LAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 323 (425)
Q Consensus 244 Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVP 323 (425)
|+|++|+||++|||++++|||||++|++|+++|++| +|||++|++++||||++||++|+++++||+|+||++++|+|||
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVP 237 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVP 237 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEec
Confidence 999999999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred eccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCC
Q 014424 324 TPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDN 403 (425)
Q Consensus 324 v~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDN 403 (425)
|+++|++||+++++|++++|||+++|+++++++|||||+|+|+|+||+||+||+||+|||+.+|++++++|+|+++||||
T Consensus 238 t~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDN 317 (337)
T PRK07403 238 TPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDN 317 (337)
T ss_pred cCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHh
Q 014424 404 EWGYSNRVLDLIEHMALV 421 (425)
Q Consensus 404 E~gys~r~vdl~~~~~~~ 421 (425)
||||||||+||+.||+++
T Consensus 318 E~Gys~r~~dl~~~~~~~ 335 (337)
T PRK07403 318 EWGYSQRVVDLAELVARK 335 (337)
T ss_pred chhHHHHHHHHHHHHHhh
Confidence 999999999999999764
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.8e-111 Score=844.64 Aligned_cols=334 Identities=49% Similarity=0.823 Sum_probs=322.3
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
|++||||||||||||.++|+++++++++||+|||+ .++++|+|||||||+||+|+++++.+ ++.|.|||++|.+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~~~v~~~-~~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFDGTVEAF-EDHLLVDGKKIRLLNNR 78 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEec-CCEEEECCEEEEEEEcC
Confidence 66899999999999999999988888999999995 79999999999999999999999986 56899999999999999
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC-CCcEEeecCccccCC-CCcEEecCCchhhhHH
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKP-NMNIVSNASCTTNCLA 245 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D-vp~vV~gVN~~~~~~-~~~IISnaSCTTn~La 245 (425)
||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|.+| ++++|||||++.|+. .++||||||||||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999999999999999999999999999999999999999999866 566799999999987 4789999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeeec
Q 014424 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTP 325 (425)
Q Consensus 246 p~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv~ 325 (425)
|++|+||++|||++++|||||++|++|+++|+++ +|||++|++++||||++||+++++.+|||+|+||++|+||||||+
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~ 237 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 237 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeec
Confidence 9999999999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred cceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCCc
Q 014424 326 NVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 405 (425)
Q Consensus 326 ~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE~ 405 (425)
+||++||+|++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~ 317 (343)
T PRK07729 238 NVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEW 317 (343)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHhhhC
Q 014424 406 GYSNRVLDLIEHMALVAAH 424 (425)
Q Consensus 406 gys~r~vdl~~~~~~~~~~ 424 (425)
||||||+||+.||++++++
T Consensus 318 Gys~r~~dl~~~~~~~~~~ 336 (343)
T PRK07729 318 GYSCRVVDLVTLVADELAK 336 (343)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 9999999999999987664
No 8
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=9.6e-110 Score=847.11 Aligned_cols=335 Identities=49% Similarity=0.802 Sum_probs=322.9
Q ss_pred CCCCceeEEEEccChHHHHHHHHHHcC--CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEE
Q 014424 85 RSDGNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK 162 (425)
Q Consensus 85 ~~~m~ikVaInGfGrIGr~vlr~l~~~--~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~ 162 (425)
...|++||||||||||||.++|+|+++ +.++|++|||+ .++++++|||+|||+||+|+++++..+++.|.|+|++|.
T Consensus 56 ~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~ 134 (395)
T PLN03096 56 VTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIK 134 (395)
T ss_pred ccccccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEE
Confidence 345778999999999999999999987 67999999995 799999999999999999999997655678999999999
Q ss_pred EEecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC-CCcEEeecCccccCCCCcEEecCCchh
Q 014424 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTT 241 (425)
Q Consensus 163 v~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D-vp~vV~gVN~~~~~~~~~IISnaSCTT 241 (425)
+++++||+++||++.|+||||||||.|+++++++.|+++|||+|++|+|++| +|+||||||++.|+..++|||||||||
T Consensus 135 v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTT 214 (395)
T PLN03096 135 VVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTT 214 (395)
T ss_pred EEEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHH
Confidence 9999999999999999999999999999999999999999999999999865 899999999999987788999999999
Q ss_pred hhHHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEE
Q 014424 242 NCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFR 321 (425)
Q Consensus 242 n~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avR 321 (425)
|||+|++|+|||+|||++++|||||+||++|+++|++| +||||+|++++||||++||++|+++||||+|+||++++|||
T Consensus 215 n~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avR 293 (395)
T PLN03096 215 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALR 293 (395)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEE
Confidence 99999999999999999999999999999999999998 79999999999999999999999999999999999999999
Q ss_pred eeeccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEe
Q 014424 322 VPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWY 401 (425)
Q Consensus 322 VPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~Wy 401 (425)
|||++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||
T Consensus 294 VPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WY 373 (395)
T PLN03096 294 VPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWY 373 (395)
T ss_pred ccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhHHHHHHHHHHh
Q 014424 402 DNEWGYSNRVLDLIEHMALV 421 (425)
Q Consensus 402 DNE~gys~r~vdl~~~~~~~ 421 (425)
||||||||||+||+.||++.
T Consensus 374 DNE~Gys~r~~dl~~~~~~~ 393 (395)
T PLN03096 374 DNEWGYSQRVVDLADIVANK 393 (395)
T ss_pred cCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999764
No 9
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=6.2e-109 Score=830.71 Aligned_cols=332 Identities=73% Similarity=1.161 Sum_probs=322.4
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccc-eEEEeCCCeEEECCEEEEEEecC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~-~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
++||||||||||||..+|.+.+++++++|+|||+..++++++|||||||+||+|++ +++.++++.|.++|++|.+++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~ 84 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIR 84 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcC
Confidence 46999999999999999999888899999999988999999999999999999996 89986667899999999999999
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccccCCCCcEEecCCchhhhHHhH
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 247 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~ 247 (425)
||+++||++.|+||||||||.|+++|+++.|+++|||+|++|+|++|+|+||||||++.|+..++||||||||||||+|+
T Consensus 85 ~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~ 164 (338)
T PLN02358 85 NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPL 164 (338)
T ss_pred CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987788999999999999999
Q ss_pred HHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeeeccc
Q 014424 248 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNV 327 (425)
Q Consensus 248 lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv~~g 327 (425)
+|+||++|||++++|||||++|++|+++|+++.+|||++|++++||||++||++++++||||+|+||++++|+||||++|
T Consensus 165 lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~g 244 (338)
T PLN02358 165 AKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 244 (338)
T ss_pred HHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCe
Confidence 99999999999999999999999999999986589999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCCcch
Q 014424 328 SVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGY 407 (425)
Q Consensus 328 s~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE~gy 407 (425)
|++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||||
T Consensus 245 s~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDNE~gy 324 (338)
T PLN02358 245 SVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGY 324 (338)
T ss_pred eEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEecCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHH
Q 014424 408 SNRVLDLIEHMAL 420 (425)
Q Consensus 408 s~r~vdl~~~~~~ 420 (425)
||||+||+.||.+
T Consensus 325 s~r~~dl~~~~~~ 337 (338)
T PLN02358 325 SSRVVDLIVHMSK 337 (338)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999964
No 10
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-108 Score=826.98 Aligned_cols=333 Identities=33% Similarity=0.568 Sum_probs=318.2
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCcc-ceEEEeCCCeEEECC-EEEEEEe
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEING-KLIKVFS 165 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~-~~v~~~~~~~l~i~G-k~I~v~~ 165 (425)
|++||||||||||||+++|+++++++++||+|||+..++++++|||+|||+||+|+ .+++.+ ++.|.+|| ++|.+++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~-~~~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVV-GEQIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEc-CCEEecCCCeEEEEEe
Confidence 55799999999999999999988888999999998789999999999999999996 589886 45899999 8999999
Q ss_pred cCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccccCCCCcEEecCCchhhhHH
Q 014424 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (425)
Q Consensus 166 ~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~~~~~~~IISnaSCTTn~La 245 (425)
+++|+++||+++|+||||||||.|++.+++.+|+++|||+|+||+|++|+||||||||++.|++.++||||||||||||+
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~La 159 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALA 159 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877789999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEeeeecccccccccCCCC--CcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEee
Q 014424 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSM--KDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 323 (425)
Q Consensus 246 p~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~--kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVP 323 (425)
|++|+|||+|||++++|||||+|+ +|...|++++ +|||++|.|++||||++||++++++||||+|+||++++|+|||
T Consensus 160 pvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVP 238 (342)
T PTZ00353 160 PVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVP 238 (342)
T ss_pred HHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEcc
Confidence 999999999999999999999997 6788888653 8999999999999999999999999999999999999999999
Q ss_pred eccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccc-cCCeEEEEEEeC
Q 014424 324 TPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGL-SASFMKLVSWYD 402 (425)
Q Consensus 324 v~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~-~~~~vKl~~WyD 402 (425)
|++||++||+|++++++++|||+++|+++++++|||||+|+|+|+||+||+||++ +|||+.+|+++ +++|+|+++|||
T Consensus 239 t~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~~-si~D~~~t~~~~~~~~vKv~~WYD 317 (342)
T PTZ00353 239 VKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGK-LCYDATSSSSSREGEVHKMVLWFD 317 (342)
T ss_pred ccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCCC-eEEEcccCeEEeCCCEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999995 99999999995 889999999999
Q ss_pred CCcchhhhHHHHHHHHHHhhh
Q 014424 403 NEWGYSNRVLDLIEHMALVAA 423 (425)
Q Consensus 403 NE~gys~r~vdl~~~~~~~~~ 423 (425)
|||||||||+||+.||.+..+
T Consensus 318 NE~Gys~r~~dl~~~~~~~~~ 338 (342)
T PTZ00353 318 VECYYAARLLSLVKQLHQIHA 338 (342)
T ss_pred CchHHHHHHHHHHHHHHhccC
Confidence 999999999999999987654
No 11
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-107 Score=819.61 Aligned_cols=329 Identities=44% Similarity=0.733 Sum_probs=318.4
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
|++||||||||||||.++|++.++++++|+++||+..++++++|||||||+||+|+++++.+ ++.|.|||++|.+++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~-g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAE-GDAIVINGKRIRTTQNK 79 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEc-CCEEEECCEEEEEEecC
Confidence 45799999999999999999998889999999998899999999999999999999999875 56899999999999999
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC--CCcEEeecCccccCC-CCcEEecCCchhhhH
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKP-NMNIVSNASCTTNCL 244 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D--vp~vV~gVN~~~~~~-~~~IISnaSCTTn~L 244 (425)
+|++++|+ |+|+||||||.|+++++++.|+++|||+|++|+|++| +|++|||||++.|++ .++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999997 9999999999999999999999999999999999754 699999999999987 378999999999999
Q ss_pred HhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeee
Q 014424 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPT 324 (425)
Q Consensus 245 ap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv 324 (425)
+|++|+||++|||++++|||||++|.+|+++|+++ +|||++|++++||||+++|++++++||||+|+||++++|+||||
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv 236 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence 99999999999999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred ccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCC
Q 014424 325 PNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 404 (425)
Q Consensus 325 ~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE 404 (425)
++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|.+++++|+|+++|||||
T Consensus 237 ~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 316 (334)
T PRK08955 237 ANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNE 316 (334)
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHH
Q 014424 405 WGYSNRVLDLIEHMAL 420 (425)
Q Consensus 405 ~gys~r~vdl~~~~~~ 420 (425)
|||||||+||+.||++
T Consensus 317 ~gys~r~~dl~~~~~~ 332 (334)
T PRK08955 317 WGYANRTAELARKVGL 332 (334)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999999964
No 12
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-107 Score=816.97 Aligned_cols=328 Identities=39% Similarity=0.664 Sum_probs=317.2
Q ss_pred eeEEEEccChHHHHHHHHHHcC---CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 90 TKVGINGFGRIGRLVLRVAAFR---DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~---~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
+||||||||||||.++|+|+++ +++++++|||+ .++++++|||||||+||+|+++++.+ ++.|.|+|++|.++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~~~v~~~-~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFAWDVRQE-RDQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCCCcEEec-CCEEEECCEEEEEEEc
Confidence 6999999999999999999985 47999999995 79999999999999999999999876 5689999999999999
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCC-C-CCcEEeecCccccCCCCcEEecCCchhhhH
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-D-APMFVVGVNEKTYKPNMNIVSNASCTTNCL 244 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~-D-vp~vV~gVN~~~~~~~~~IISnaSCTTn~L 244 (425)
++|+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|++ | .++||||||++.|+..++||||||||||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~L 159 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCI 159 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHH
Confidence 99999999999999999999999999999999999999999999985 5 458999999999987788999999999999
Q ss_pred HhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeee
Q 014424 245 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPT 324 (425)
Q Consensus 245 ap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv 324 (425)
+|++|+|||+|||++++||||||+|++|+++|+++ ++||++|.+++||||++||++++++||||+|+||++++||||||
T Consensus 160 ap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv 238 (336)
T PRK13535 160 IPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPT 238 (336)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCc
Confidence 99999999999999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred ccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCC
Q 014424 325 PNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 404 (425)
Q Consensus 325 ~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE 404 (425)
++||++||++++++++++||++++|+++++++|||||+|+|+|+||+||+||+||+|||+.+|++++++|+|+++|||||
T Consensus 239 ~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 318 (336)
T PRK13535 239 INVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNE 318 (336)
T ss_pred cCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHH
Q 014424 405 WGYSNRVLDLIEHMAL 420 (425)
Q Consensus 405 ~gys~r~vdl~~~~~~ 420 (425)
|||||||+||+.||.+
T Consensus 319 ~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 319 WGFANRMLDTTLAMAA 334 (336)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999999999964
No 13
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-107 Score=801.31 Aligned_cols=330 Identities=62% Similarity=0.952 Sum_probs=320.1
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
++||||||||||||+++|++.+++ ++|||+|||+ .++++++|||+|||+||+|.++++.+ ++.+.|+|+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~~~v~~~-~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVK-DDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCCCccccc-CCeEEECCceEEEEecC
Confidence 379999999999999999999998 7999999997 89999999999999999999999865 45899999999999999
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhC-CCCEEEEeCCCCC-CCcEEeecCccccCCCCcEEecCCchhhhHH
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKG-GAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~a-GakkVVISaps~D-vp~vV~gVN~~~~~~~~~IISnaSCTTn~La 245 (425)
+|+.+||+++|+|+|+||||.|+++|.++.|+++ |||||++|+|+++ +++||+|||++.|+..++||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999988 5999999999987 9999999999999988999999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeeec
Q 014424 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTP 325 (425)
Q Consensus 246 p~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv~ 325 (425)
|++|+|+|+|||++++|||+|++|++|+++|||| ++|||+|++++||||++||++|++++|||+|+||++|+++||||+
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~ 237 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTP 237 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCC
Confidence 9999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred cceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCCc
Q 014424 326 NVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 405 (425)
Q Consensus 326 ~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE~ 405 (425)
++|++||+++|+|++++|||+++|++++++.|||+++|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~ 317 (335)
T COG0057 238 NVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEW 317 (335)
T ss_pred CcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred chhhhHHHHHHHHHHh
Q 014424 406 GYSNRVLDLIEHMALV 421 (425)
Q Consensus 406 gys~r~vdl~~~~~~~ 421 (425)
||++|++|+..+++..
T Consensus 318 gys~r~vD~~~~~~~~ 333 (335)
T COG0057 318 GYSNRVVDLLAMVAKA 333 (335)
T ss_pred cchHHHHHHHHHHhhh
Confidence 9999999997777653
No 14
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.6e-106 Score=808.50 Aligned_cols=320 Identities=60% Similarity=0.970 Sum_probs=309.8
Q ss_pred eEEEEccChHHHHHHHHHHcC--CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCC-eEEECCE-EEEEEec
Q 014424 91 KVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDS-TLEINGK-LIKVFSK 166 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~--~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~-~l~i~Gk-~I~v~~~ 166 (425)
||||||||||||.++|+++++ ++++||+|||+ .++++++|||+|||+||+|+++++.+ ++ .|.|+|+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~~~v~~~-~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTAD-EDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCCCcEEec-CCceEEECCeEEEEEEec
Confidence 799999999999999999887 47999999996 89999999999999999999999986 45 6999999 9999999
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC-CCcEEeecCccccCCCCcEEecCCchhhhHH
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D-vp~vV~gVN~~~~~~~~~IISnaSCTTn~La 245 (425)
++|+++||++.|+||||||||.|+++++++.|+++|||+|++|+|++| +||+|||||++.|+..++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 8999999999999877789999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeeec
Q 014424 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTP 325 (425)
Q Consensus 246 p~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv~ 325 (425)
|++|+||++|||++++|||||++|++|+++|+++ ++||++|++++||||+++|++++++||||+|+||++++|+||||+
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred cceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccc--cCCeEEEEEEeCC
Q 014424 326 NVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGL--SASFMKLVSWYDN 403 (425)
Q Consensus 326 ~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~--~~~~vKl~~WyDN 403 (425)
+||++|+++++++++++|||+++|+++++++|||||+|+|+|+||+||+||+||+|||+.+|+++ +++|+||++||||
T Consensus 238 ~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDN 317 (327)
T TIGR01534 238 NVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDN 317 (327)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999995 4899999999999
Q ss_pred CcchhhhHHH
Q 014424 404 EWGYSNRVLD 413 (425)
Q Consensus 404 E~gys~r~vd 413 (425)
||||||||+|
T Consensus 318 E~gys~r~~d 327 (327)
T TIGR01534 318 EWGYSNRVVD 327 (327)
T ss_pred CceeeeEccC
Confidence 9999999987
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-105 Score=823.84 Aligned_cols=348 Identities=38% Similarity=0.594 Sum_probs=325.8
Q ss_pred cccccCCccccCCCCCCceeEEEEccChHHHHHHHHHHcC----CCceEEEEc----CCCCChHHHhHhhhcccccCCcc
Q 014424 72 ATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFR----DDVDVVAVN----DPFIDAKYMAYMFKYDSTHGVFK 143 (425)
Q Consensus 72 ~~~~~~~~~~~~~~~~m~ikVaInGfGrIGr~vlr~l~~~----~~~evvaIn----d~~~~~~~~ayll~yDS~~g~f~ 143 (425)
+..+++...........+.||||||||||||+++|++.++ ++++||||| |. .++++++|||+|||+||+|+
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~ 188 (477)
T PRK08289 110 FVAEELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN 188 (477)
T ss_pred HHHHHHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC
Confidence 3344555555444434466999999999999999999876 579999995 54 79999999999999999999
Q ss_pred ceEEEeC-CCeEEECCEEEEEEecCCCCCCCCcccCcC--EEEEccCcccCHHHHHHHHh-CCCCEEEEeCCCCC-CCcE
Q 014424 144 GTINVVD-DSTLEINGKLIKVFSKRDPAEIPWGDYGVD--YVVESSGVFTTIAKASAHMK-GGAKKVVISAPSAD-APMF 218 (425)
Q Consensus 144 ~~v~~~~-~~~l~i~Gk~I~v~~~~dp~~i~W~~~gvD--iV~esTG~f~s~e~a~~hl~-aGakkVVISaps~D-vp~v 218 (425)
++++.++ ++.|.+||+.|.++++++|+++||+++|+| +|+||||.|++.+.+.+||+ +|||||+||+|++| +|+|
T Consensus 189 ~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~i 268 (477)
T PRK08289 189 GTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNI 268 (477)
T ss_pred CceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeE
Confidence 9998863 568999999999999999999999999999 99999999999999999999 89999999999986 8999
Q ss_pred EeecCccccCCCCcEEecCCchhhhHHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCC
Q 014424 219 VVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 298 (425)
Q Consensus 219 V~gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~t 298 (425)
|||||++.|+..++||||||||||||+|++|+|||+|||++++|||||++|++|+++|++| ++|||+|++++||||++|
T Consensus 269 V~GVN~~~~~~~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsT 347 (477)
T PRK08289 269 VHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITET 347 (477)
T ss_pred EcccCHHHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCC
Confidence 9999999998778899999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred ChhHHHHhhcCCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhc-CCCCccccccCC-ceEeecCCCC
Q 014424 299 GAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASE-GSLKGILGYTDE-DVVSNDFVGD 376 (425)
Q Consensus 299 Gaakav~kVLPeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~-~~lkgil~yte~-~~VS~Df~~~ 376 (425)
|++|+++||||+|+||++|+|+||||++||++||++++++++++|||+++|+++++ ++|||||+|+++ |+||+||+|+
T Consensus 348 GAAkAv~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~ 427 (477)
T PRK08289 348 GAAKAVAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGS 427 (477)
T ss_pred ChhhhhhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCC
Confidence 99999999999999999999999999999999999999999999999999999994 899999999999 7999999999
Q ss_pred CcceEeeCCCcccccCCeEEEEEEeCCCcchhhhHHHHHHHHHHhh
Q 014424 377 SRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 422 (425)
Q Consensus 377 ~~s~i~d~~~~~~~~~~~vKl~~WyDNE~gys~r~vdl~~~~~~~~ 422 (425)
+||+|||+.+|+++ ++++|+++||||||||||||+||+.||++..
T Consensus 428 ~~SsI~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 428 RHAGVVDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred CchhheehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhcc
Confidence 99999999999998 7899999999999999999999999998754
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.1e-102 Score=782.87 Aligned_cols=320 Identities=39% Similarity=0.717 Sum_probs=309.0
Q ss_pred eEEEEccChHHHHHHHHHHcCC---CceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD---DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~---~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
||||||||||||.++|+|++++ +|+|++|||+ .+.++++|||+|||+||+|+++++.+ ++.|.|+|+.|.+++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~~~v~~~-~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFPGEVKVD-GDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCCCcEEEe-CCEEEECCeEEEEEEcC
Confidence 6999999999999999999864 6999999995 79999999999999999999999886 56899999999999999
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCC-C-CCcEEeecCccccCCCCcEEecCCchhhhHH
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-D-APMFVVGVNEKTYKPNMNIVSNASCTTNCLA 245 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~-D-vp~vV~gVN~~~~~~~~~IISnaSCTTn~La 245 (425)
+|+++||++.|+|+||||||.|.+++.++.|+++||++|++|+|+. | .+++|||||++.|+..++||||||||||||+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~la 158 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIV 158 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999975 4 4589999999999877889999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeeec
Q 014424 246 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTP 325 (425)
Q Consensus 246 p~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv~ 325 (425)
|++|+||++|||++++|||||++|++|+++|+++ ++||++|.+++||||+++|++++++||||+|+||++++||||||+
T Consensus 159 p~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~ 237 (325)
T TIGR01532 159 PLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTV 237 (325)
T ss_pred HHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred cceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCCc
Q 014424 326 NVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 405 (425)
Q Consensus 326 ~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE~ 405 (425)
+||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+||+||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~ 317 (325)
T TIGR01532 238 NVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEW 317 (325)
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHH
Q 014424 406 GYSNRVLD 413 (425)
Q Consensus 406 gys~r~vd 413 (425)
||||||+|
T Consensus 318 gys~r~~d 325 (325)
T TIGR01532 318 GFANRMLD 325 (325)
T ss_pred eeeeEccC
Confidence 99999987
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-87 Score=643.07 Aligned_cols=285 Identities=71% Similarity=1.132 Sum_probs=274.0
Q ss_pred HHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCCCCCCcccCc
Q 014424 100 IGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGV 179 (425)
Q Consensus 100 IGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~~i~W~~~gv 179 (425)
|||.++ + +.++++++|||++++.+||+|||+|||+||+|+++++++ +.+++++|+.|.++++++|..|+|.+.++
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~~-~~~~i~~G~~i~~~~~~~p~~i~w~~~g~ 75 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAE-NFKLIINGNPITIFQFRDPAKIPWGAKGA 75 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccccceeec-CCceeecCceEEeecccCcccCccccccc
Confidence 577776 2 556999999999999999999999999999999999997 45788999999999999999999999999
Q ss_pred CEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccccCCCCcEEecCCchhhhHHhHHHHHHhhcCeeE
Q 014424 180 DYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILE 259 (425)
Q Consensus 180 DiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~~ 259 (425)
|+|+|+||.|++.|.+..|+++|+|+++||+|+.|.||||+|||+++|+++..||||+|||||||+|++|+|||+|||.+
T Consensus 76 ~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~E 155 (285)
T KOG0657|consen 76 DIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIME 155 (285)
T ss_pred eeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheecccccccc
Confidence 99999999999999999999999999999999999999999999999998777999999999999999999999999999
Q ss_pred EEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEeeeccceeeeEEEEecCC
Q 014424 260 GLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKG 339 (425)
Q Consensus 260 ~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVPv~~gs~~dltv~lek~ 339 (425)
++|||+|+++++|+++|||++++||+||.+.|||||.+||++|+++|+||||+||++||+|||||+ ++++||+|+++++
T Consensus 156 gLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~ 234 (285)
T KOG0657|consen 156 GLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKP 234 (285)
T ss_pred ccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEeCCCcchhhhHHHHHHHHH
Q 014424 340 ASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 419 (425)
Q Consensus 340 ~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~WyDNE~gys~r~vdl~~~~~ 419 (425)
+++|+|++++|++++++||||| ||+ +| ++|||||||||||++||++||+
T Consensus 235 a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~h~a 283 (285)
T KOG0657|consen 235 AKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLMEHMA 283 (285)
T ss_pred cchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHHHHHHHh
Confidence 9999999999999999999999 887 45 9999999999999999999998
Q ss_pred Hh
Q 014424 420 LV 421 (425)
Q Consensus 420 ~~ 421 (425)
++
T Consensus 284 sk 285 (285)
T KOG0657|consen 284 SK 285 (285)
T ss_pred cC
Confidence 64
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.9e-52 Score=420.11 Aligned_cols=234 Identities=23% Similarity=0.297 Sum_probs=207.9
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChH---HHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAK---YMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 92 VaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~---~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
|||||||+|||+++|++.++++++||+||| .+++ +++|+++||+.|+.+...++.+ +..+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD--~~~~~~a~lA~~lgyds~~~~~~~~~~~~-~~~l~v~g~--------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK--TSPDFEAYRAKELGIPVYAASEEFIPRFE-EAGIEVAGT--------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec--CChHHHHHHHHHhCCCEEeecCCcceEec-cCceEecCC---------
Confidence 699999999999999998889999999999 4777 7788888999995443356654 346777664
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC--CCcEEeecCccccCCCCcEEecCCchhhhHHh
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 246 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D--vp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 246 (425)
++++. .++|+|++|||.+...+.++.|++.|+|+|++|+|++| +++||+|+|++.|...+ ||||+|||||||+|
T Consensus 69 ~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~Lap 144 (333)
T TIGR01546 69 LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLVR 144 (333)
T ss_pred HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHHH
Confidence 34442 37999999999999999999999999999999999987 47899999999998544 99999999999999
Q ss_pred HHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecC-CC---ChhHHHHhhcCCCCCceeEEEEEe
Q 014424 247 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPS-ST---GAAKAVGKVLPDLNGKLTGMAFRV 322 (425)
Q Consensus 247 ~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~-~t---Gaakav~kVLPeL~gkit~~avRV 322 (425)
++|+|+++|||++++|||+|. |++| +|||||| ++||||+ +| +.++++++|||+|+ ++++++||
T Consensus 145 ~~~~L~~~fGI~~~~~Ttvh~-t~dq--------~d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrV 211 (333)
T TIGR01546 145 TLNAINDYSKVDKVRAVMVRR-AADP--------NDVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVV 211 (333)
T ss_pred HHHHHHHhcCeEEEEEEEEee-cCCh--------hhhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEe
Confidence 999999999999999999996 9888 4889999 5999999 44 56899999999999 99999999
Q ss_pred eeccceeeeEEEEecCCCCHHHHHHHHHHhhc
Q 014424 323 PTPNVSVVDLTCRLAKGASYEDVKAAIKYASE 354 (425)
Q Consensus 323 Pv~~gs~~dltv~lek~~s~eeI~~alk~a~~ 354 (425)
||+++|++||++++++++++|||+++|+++++
T Consensus 212 Pt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 212 PTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred CCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999999885
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=2.7e-50 Score=366.40 Aligned_cols=157 Identities=63% Similarity=0.987 Sum_probs=152.9
Q ss_pred HHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCceeEEEEEee
Q 014424 244 LAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 323 (425)
Q Consensus 244 Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gkit~~avRVP 323 (425)
|+|++|+|+|+|||++++|||+|++|++|+++|+++ +|||+||++++||||+++|++|++++|||+|+||+++++||||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 799999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred eccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEeecCCCCCcceEeeCCCcccccCCeEEEEEEe
Q 014424 324 TPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWY 401 (425)
Q Consensus 324 v~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~vKl~~Wy 401 (425)
|+++|++||+++++|++++|||+++|+++++++++||++|+|+|+||+||+|++||+|||+.++++++++++|+++||
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-46 Score=374.83 Aligned_cols=260 Identities=24% Similarity=0.310 Sum_probs=205.6
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcc--cccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYD--STHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yD--S~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
|+||||||+|+|||+++|++.++++++|++|+|. ++++.+|+++|. ..|+.+....+..++..+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~-------- 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAG-------- 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCccccccccCCceEEcC--------
Confidence 3699999999999999999999999999999994 589999998842 1455554444311122344433
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCC-CCC--cEEeecCccccCCCCcEEecCCchhhh
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA-DAP--MFVVGVNEKTYKPNMNIVSNASCTTNC 243 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~-Dvp--~vV~gVN~~~~~~~~~IISnaSCTTn~ 243 (425)
+++++. .++|+||||||.+...+.++.|+++| ++||+++|.. ++| .||+|||++.+.. .++|+||||||||
T Consensus 71 -~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~~ 144 (341)
T PRK04207 71 -TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTTG 144 (341)
T ss_pred -ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHHH
Confidence 223331 37999999999999999999999999 7888888863 444 4899999999865 3499999999999
Q ss_pred HHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCC----CChhHHHHhhcCCCCCceeEEE
Q 014424 244 LAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSS----TGAAKAVGKVLPDLNGKLTGMA 319 (425)
Q Consensus 244 Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~----tGaakav~kVLPeL~gkit~~a 319 (425)
|+|+||+||++|||+++.|||||++|+ + ++++ |++..||+|.. +...+++++|+|+|+ ++++|
T Consensus 145 l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~a 211 (341)
T PRK04207 145 LCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTMA 211 (341)
T ss_pred HHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEEE
Confidence 999999999999999999999999883 2 3553 67899999752 233489999999998 99999
Q ss_pred EEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcC----CCCccccccCCceEeecCCCCCc
Q 014424 320 FRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEG----SLKGILGYTDEDVVSNDFVGDSR 378 (425)
Q Consensus 320 vRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~----~lkgil~yte~~~VS~Df~~~~~ 378 (425)
+||||++||+++++++|++++++|||+++|++++.- .-.|+.+ +++++..-+=.|.++
T Consensus 212 vrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~ 273 (341)
T PRK04207 212 VKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPR 273 (341)
T ss_pred EEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCc
Confidence 999999999999999999999999999999998752 2245655 555544333344443
No 21
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=3.6e-45 Score=330.77 Aligned_cols=149 Identities=60% Similarity=1.003 Sum_probs=139.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
|||||||||||||+++|+++.+++|+||+|||+..++++++|||+|||+||+|..+++.+ ++.|.++|+.|+++++++|
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~-~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVD-DDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEE-TTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccc-cceeEeecccccchhhhhh
Confidence 599999999999999999999999999999998669999999999999999999999987 4589999999999999999
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC--CCcEEeecCccccCCCCcEEecCCc
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD--APMFVVGVNEKTYKPNMNIVSNASC 239 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D--vp~vV~gVN~~~~~~~~~IISnaSC 239 (425)
+++||++.|+|||+||||.|.+++.++.|+++|||||++|+|++| +||||||||++.|+++++||||+||
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred cccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 999999999999999999999999999999999999999999986 8999999999999987799999999
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-41 Score=333.40 Aligned_cols=231 Identities=17% Similarity=0.245 Sum_probs=193.9
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccce-EEEeCCCeEEECCEEEEEEec
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~-v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
.++||| | +|.+||.++++|+++ +|+ +.++ ++|.. . .+. ++++.|+|+++.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer-~fp---v~~l--------~l~~s---------~~~s~--gk~i~f~g~~~~V~-- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQS-DLE---IEQI--------SIVEI---------EPFGE--EQGIRFNNKAVEQI-- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhc-CCc---hhhe--------eeccc---------ccccC--CCEEEECCEEEEEE--
Confidence 469999 9 999999999999998 587 3442 44431 1 122 56899999999997
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCC--CCcEEecCCc
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASC 239 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~--~~~IISnaSC 239 (425)
+.++.+|. ++|+||+ +|...++++++...++|| +||+++| +|+|++|||||++.+.. .++||+||||
T Consensus 57 -~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 57 -APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred -ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 44555664 8999999 988899999999999999 9999998 47999999999998875 3689999999
Q ss_pred hhhhHHhHHHHHHhhcCeeEEEEEeeeecccccc------------cccCCCCCcccCcccCcceeecCC-CChhHHHHh
Q 014424 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK------------TVDGPSMKDWRGGRGASQNIIPSS-TGAAKAVGK 306 (425)
Q Consensus 240 TTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~------------~vDg~~~kd~r~gr~aa~NIIP~~-tGaakav~k 306 (425)
+|.+|+++|||||+.|||+++.+|||||+||+.+ ++++... + ...++++||+||+. .|-..+.+|
T Consensus 131 sTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~-~-~~~~~iAFNviP~ig~~m~~EtrK 208 (322)
T PRK06901 131 QVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPL-D-EEEQRLAFDVFPANAQNLELQLQK 208 (322)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCC-C-CCceeeeccccccCCccHHHHHHH
Confidence 9999999999999999999999999999999741 2333221 1 12388999999999 466788999
Q ss_pred hcCCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhc
Q 014424 307 VLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASE 354 (425)
Q Consensus 307 VLPeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~ 354 (425)
|||+| .++++||+||||++||.+.++++++++++.|+++++|++++.
T Consensus 209 Il~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~g 255 (322)
T PRK06901 209 IFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNNL 255 (322)
T ss_pred HhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 99888 249999999999999999999999999999999999999873
No 23
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=6.3e-41 Score=302.56 Aligned_cols=148 Identities=59% Similarity=0.932 Sum_probs=140.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+||||+|||||||.++|++.+++++++++|+|+ .++++++|||+|||+||+|..+++.+ ++.|.++|+.|.++++++|
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~~~v~~~-~~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFPGEVEVD-EDGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCCCcEEEe-CCEEEECCEEEEEEecCCh
Confidence 499999999999999999998889999999996 89999999999999999999999876 4589999999999999999
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCC-CCcEEeecCccccCCCCcEEecCCc
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSAD-APMFVVGVNEKTYKPNMNIVSNASC 239 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~D-vp~vV~gVN~~~~~~~~~IISnaSC 239 (425)
.++||++.|+|||+||||.|.+++.++.|+++|||||++|+|++| +++||+|||++.|++.++||||+||
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999999999999999999999999999999999999987 4699999999999987779999999
No 24
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-38 Score=320.65 Aligned_cols=229 Identities=24% Similarity=0.337 Sum_probs=193.1
Q ss_pred eeEEEEc-cChHHHHHHHHHHc--CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 90 TKVGING-FGRIGRLVLRVAAF--RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~--~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
+||+|+| +|++|++++|+|.+ +|.++++++.... +. ++.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~-----------------------~~--g~~l~~~g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR-----------------------SA--GKELSFKGKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc-----------------------cC--CCeeeeCCceeEEe--
Confidence 5999999 99999999999998 5778888875420 00 23344566555554
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCCC--CcEEecCCc
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN--MNIVSNASC 239 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~~--~~IISnaSC 239 (425)
+++..+|. ++|+||+|+|.+.+++.+++++++|+ +||+.++ +|+|+++||||++.++.. ++||+||+|
T Consensus 55 -d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C 129 (334)
T PRK14874 55 -DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNC 129 (334)
T ss_pred -eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccH
Confidence 44445674 89999999999999999999999998 7776665 248999999999999764 479999999
Q ss_pred hhhhHHhHHHHHHhhcCeeEEEEEeeeeccc------------ccccccCCC--CCcccCcccCcceeecCC-----CCh
Q 014424 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPS--MKDWRGGRGASQNIIPSS-----TGA 300 (425)
Q Consensus 240 TTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~------------~q~~vDg~~--~kd~r~gr~aa~NIIP~~-----tGa 300 (425)
+|||++|+|+||+++|+|+++.|||+|++|| +|..+|+++ .+++|++|++++|++|+. +|+
T Consensus 130 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh 209 (334)
T PRK14874 130 STIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGY 209 (334)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCC
Confidence 9999999999999999999999999999997 566788653 268899999999999997 677
Q ss_pred hHH-------HHhhc--CCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHh
Q 014424 301 AKA-------VGKVL--PDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYA 352 (425)
Q Consensus 301 aka-------v~kVL--PeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a 352 (425)
+++ ++|++ |+++ ++++++||||++||+.+++++++++++.+||+++|+++
T Consensus 210 ~~eE~ki~~el~~il~~~~~~--v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~ 268 (334)
T PRK14874 210 TKEEMKMVNETKKILGDPDLK--VSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA 268 (334)
T ss_pred cHHHHHHHHHHHHHhCCCCCe--EEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC
Confidence 666 57777 7774 99999999999999999999999999999999999984
No 25
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-38 Score=311.39 Aligned_cols=292 Identities=22% Similarity=0.253 Sum_probs=210.3
Q ss_pred eeEEEEc-cChHHHHHHHHHHcC-CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCe-EEECCEEEEEEec
Q 014424 90 TKVGING-FGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDST-LEINGKLIKVFSK 166 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~-~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~-l~i~Gk~I~v~~~ 166 (425)
+||||+| +|.||+.++++|.++ +.++.+.+ | .++.++ |++ +.|.|+.+.+. +
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~-------------~---------AS~rSa--G~~~~~f~~~~~~v~-~ 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVL-------------L---------ASARSA--GKKYIEFGGKSIGVP-E 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEE-------------E---------eccccc--CCccccccCccccCc-c
Confidence 6999999 999999999999995 44442222 1 123344 334 77888776664 2
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCC--CCc-EEecCC
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMN-IVSNAS 238 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~--~~~-IISnaS 238 (425)
.-.+...|. ++||||+|.|...+++.++...++|+ +|||++| +|+|++||+||++.+.. .++ ||+|||
T Consensus 57 ~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpN 132 (334)
T COG0136 57 DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPN 132 (334)
T ss_pred ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCC
Confidence 115566675 89999999999999999999999998 9999998 47999999999888764 244 999999
Q ss_pred chhhhHHhHHHHHHhhcCeeEEEEEeeeecccccc-cccCCC---------CCcccCcccCcceeecCCCC-----hhH-
Q 014424 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK-TVDGPS---------MKDWRGGRGASQNIIPSSTG-----AAK- 302 (425)
Q Consensus 239 CTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~-~vDg~~---------~kd~r~gr~aa~NIIP~~tG-----aak- 302 (425)
|||.+|++.||||+++|||+++.+|||||+||+.. .++... ....-.++.+|+|+||++.+ ++|
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~E 212 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKE 212 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCccHH
Confidence 99999999999999999999999999999999754 222110 00111268899999999965 443
Q ss_pred ------HHHhhcCCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHH-HHhhcCCCCcccccc-CCceEeecCC
Q 014424 303 ------AVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAI-KYASEGSLKGILGYT-DEDVVSNDFV 374 (425)
Q Consensus 303 ------av~kVLPeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~al-k~a~~~~lkgil~yt-e~~~VS~Df~ 374 (425)
+++|||++-..+++++|+||||++||++.++++++++++.+|+.+.+ .+++ .+-+..-. +.|..-.|-.
T Consensus 213 E~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap---~v~v~~~~~~~P~~~~d~~ 289 (334)
T COG0136 213 EWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAP---GVVVVDNPEDRPQTPLDAT 289 (334)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccCC---CcEEEeCCccCccChhhhc
Confidence 45788987778899999999999999999999999999999999665 4433 22222222 2455555655
Q ss_pred CCCcceEeeCCCccc-ccCCeEEEEEEeCC-CcchhhhHHHHH
Q 014424 375 GDSRSSIFDAKAGIG-LSASFMKLVSWYDN-EWGYSNRVLDLI 415 (425)
Q Consensus 375 ~~~~s~i~d~~~~~~-~~~~~vKl~~WyDN-E~gys~r~vdl~ 415 (425)
|.. .++-.+-..- ..++.+++..==|| -||=+--.+-++
T Consensus 290 g~~--~v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~ia 330 (334)
T COG0136 290 GGD--EVSVGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIA 330 (334)
T ss_pred CCC--ceEEeEeeecCCCCCcEEEEEEechhhhhhHHHHHHHH
Confidence 555 2332222111 12344666666677 355444333333
No 26
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=9.1e-38 Score=315.72 Aligned_cols=231 Identities=24% Similarity=0.291 Sum_probs=188.9
Q ss_pred eEEEEc-cChHHHHHHHHHHc--CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 91 KVGING-FGRIGRLVLRVAAF--RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~--~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
||+|+| +|++|++++|+|.+ +|.++++.+... .+. +..+.+.|+.+.+. ..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-----------------------~~~--g~~~~~~~~~~~~~-~~ 54 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-----------------------RSA--GRKVTFKGKELEVN-EA 54 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-----------------------ccC--CCeeeeCCeeEEEE-eC
Confidence 689999 99999999999988 455665544321 011 33455556554443 22
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCC--CCcEEecCCch
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASCT 240 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~--~~~IISnaSCT 240 (425)
++ ..| .++|+||+|+|.+.+++.++.|+++|+ +||+.++ +|+|++|||||++.++. .++||+||+|+
T Consensus 55 ~~--~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~ 128 (339)
T TIGR01296 55 KI--ESF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCS 128 (339)
T ss_pred Ch--HHh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcH
Confidence 22 234 489999999999999999999999998 6887775 25899999999999875 35699999999
Q ss_pred hhhHHhHHHHHHhhcCeeEEEEEeeeecccc------------cccccCCCCCc-------ccCcccCcceeecCC----
Q 014424 241 TNCLAPLAKVVHEEFGILEGLMTTVHATTAT------------QKTVDGPSMKD-------WRGGRGASQNIIPSS---- 297 (425)
Q Consensus 241 Tn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~------------q~~vDg~~~kd-------~r~gr~aa~NIIP~~---- 297 (425)
|||++++|+||+++|+|+++.|||+|++|++ |++.++++..+ .+++|++++||||++
T Consensus 129 ~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~ 208 (339)
T TIGR01296 129 TIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFN 208 (339)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcc
Confidence 9999999999999999999999999999996 44566655222 788999999999995
Q ss_pred -CChhHHHHhhcCCCC-------CceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhh
Q 014424 298 -TGAAKAVGKVLPDLN-------GKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYAS 353 (425)
Q Consensus 298 -tGaakav~kVLPeL~-------gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~ 353 (425)
+|+++++.|+.|||+ .+++++|+||||++||+.+++++++++++.+|++++|++++
T Consensus 209 ~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 209 DDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAP 272 (339)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 688888888887765 47999999999999999999999999999999999999653
No 27
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1.6e-37 Score=315.04 Aligned_cols=237 Identities=18% Similarity=0.194 Sum_probs=187.1
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
+||||+| +|.|||.++++|+++++|++. .+ ++|. | ..+. +..+.++|+.+.+. +
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~---~~--------~~~s--s-------~~s~--g~~~~f~~~~~~v~---~ 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAI---RP--------VFFS--T-------SQLG--QAAPSFGGTTGTLQ---D 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccc---cE--------EEEE--c-------hhhC--CCcCCCCCCcceEE---c
Confidence 3899999 999999999999977788832 21 2221 1 1111 44677888877665 2
Q ss_pred CCCC-CCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCCC--CcE--EecCC
Q 014424 169 PAEI-PWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN--MNI--VSNAS 238 (425)
Q Consensus 169 p~~i-~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~~--~~I--ISnaS 238 (425)
.+.+ .| .++|+||+|+|...+++.++...++|...+|||++| +|+|++||+||++.+... +.| |+|||
T Consensus 56 ~~~~~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianPN 133 (366)
T TIGR01745 56 AFDIDAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGGN 133 (366)
T ss_pred Ccccccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECcC
Confidence 3333 45 389999999999999999999999995559999998 479999999999887652 567 89999
Q ss_pred chhhhHHhHHHHHHhhcCeeEEEEEeeeecccccc------------cccC--------C-----------------CCC
Q 014424 239 CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK------------TVDG--------P-----------------SMK 281 (425)
Q Consensus 239 CTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~------------~vDg--------~-----------------~~k 281 (425)
|+|++|+++|+|||++|||+++.+|||||+||+.+ +.++ . ...
T Consensus 134 Cst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 213 (366)
T TIGR01745 134 CTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELP 213 (366)
T ss_pred HHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCCC
Confidence 99999999999999999999999999999999752 1221 0 001
Q ss_pred cccCcccCcceeecCC-----CChh-------HHHHhhcCC-CCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHH
Q 014424 282 DWRGGRGASQNIIPSS-----TGAA-------KAVGKVLPD-LNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAA 348 (425)
Q Consensus 282 d~r~gr~aa~NIIP~~-----tGaa-------kav~kVLPe-L~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~a 348 (425)
.-.+++++++|+||++ +|++ .|.+|||-. -+.+++++|+||||++||.+.++++++++++.++++++
T Consensus 214 ~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~~ 293 (366)
T TIGR01745 214 VDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEI 293 (366)
T ss_pred cccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHH
Confidence 2245788999999997 3554 446788833 23459999999999999999999999999999999999
Q ss_pred HHHhh
Q 014424 349 IKYAS 353 (425)
Q Consensus 349 lk~a~ 353 (425)
|+++.
T Consensus 294 L~~~~ 298 (366)
T TIGR01745 294 IRAHN 298 (366)
T ss_pred HHhCC
Confidence 99854
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=9.2e-36 Score=301.16 Aligned_cols=233 Identities=21% Similarity=0.320 Sum_probs=186.2
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
+||||+| +|.+|++++|+|.+||+|++.-+ +++ .| ..++ |+.+.+.|+.+.+. +.+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l-----------~~~--aS-------~~sa--Gk~~~~~~~~l~v~-~~~ 62 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEV-----------TLL--SS-------KRSA--GKTVQFKGREIIIQ-EAK 62 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccE-----------EEE--EC-------cccC--CCCeeeCCcceEEE-eCC
Confidence 5999999 99999999999998899983211 111 11 1122 45677778776665 334
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCCCCcEEecCCchhhh
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPNMNIVSNASCTTNC 243 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~~~~IISnaSCTTn~ 243 (425)
++. | .++|+||+|+|...+++.++.+.++|+ +||++++ .|+|+++|+||.+.+...++||+||+|+|++
T Consensus 63 ~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~tt~ 136 (347)
T PRK06728 63 INS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQ 136 (347)
T ss_pred HHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHHHH
Confidence 443 4 379999999999999999999989988 7777776 3699999999999887645799999999999
Q ss_pred HHhHHHHHHhhcCeeEEEEEeeeecccccc------------cccCCCCCcccCc-------ccCcceeecCC-----CC
Q 014424 244 LAPLAKVVHEEFGILEGLMTTVHATTATQK------------TVDGPSMKDWRGG-------RGASQNIIPSS-----TG 299 (425)
Q Consensus 244 Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~------------~vDg~~~kd~r~g-------r~aa~NIIP~~-----tG 299 (425)
++..|+||+++++|+++.++|+|++||+.+ ++++.....-.++ +++++|+||++ +|
T Consensus 137 ~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g 216 (347)
T PRK06728 137 MVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDND 216 (347)
T ss_pred HHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccCC
Confidence 999999999999999999999999999742 3333211112344 88999999998 45
Q ss_pred hh-------HHHHhhc--CCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhh
Q 014424 300 AA-------KAVGKVL--PDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYAS 353 (425)
Q Consensus 300 aa-------kav~kVL--PeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~ 353 (425)
.+ .|.+||| |+| ++++||+||||++||.+.++++++++++.++++++|++++
T Consensus 217 ~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~ 277 (347)
T PRK06728 217 FTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP 277 (347)
T ss_pred ccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence 44 4467888 555 4999999999999999999999999999999999998875
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3.8e-35 Score=298.49 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=183.5
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCce---EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEe
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVD---VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~e---vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~ 165 (425)
+||||+| +|.+|++++|.++++++|+ ++..... +. .+..+.++|+...++.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~------------------------~s-g~~~~~f~g~~~~v~~ 56 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS------------------------QA-GGAAPSFGGKEGTLQD 56 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch------------------------hh-CCcccccCCCcceEEe
Confidence 6999999 9999999999777777888 4332210 00 0222456776666664
Q ss_pred cCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCCC--C--cEEec
Q 014424 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN--M--NIVSN 236 (425)
Q Consensus 166 ~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~~--~--~IISn 236 (425)
..+++. | .++|+||+|+|...+.+.++...++|.+.+||++++ +|+|++||+||++.+... + ++|+|
T Consensus 57 ~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIan 132 (369)
T PRK06598 57 AFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVG 132 (369)
T ss_pred cCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEc
Confidence 333333 4 379999999999999999999999997668999987 369999999999887642 2 48999
Q ss_pred CCchhhhHHhHHHHHHhhcCeeEEEEEeeeecccccc------------ccc-------------------------CCC
Q 014424 237 ASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK------------TVD-------------------------GPS 279 (425)
Q Consensus 237 aSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~------------~vD-------------------------g~~ 279 (425)
|+|+|++++..|+||++.++|+++.++|||++||+.+ +++ +..
T Consensus 133 PnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (369)
T PRK06598 133 GNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGD 212 (369)
T ss_pred CChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCC
Confidence 9999999999999999999999999999999999753 111 111
Q ss_pred CCcccCcccCcceeecCC-----CChhH-------HHHhhcCC--CCCceeEEEEEeeeccceeeeEEEEecCCCCHHHH
Q 014424 280 MKDWRGGRGASQNIIPSS-----TGAAK-------AVGKVLPD--LNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDV 345 (425)
Q Consensus 280 ~kd~r~gr~aa~NIIP~~-----tGaak-------av~kVLPe--L~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI 345 (425)
...-.+.+++++|+||++ +|+++ |.+|||-. -..+++++|+||||++||.+.++++++++++.+|+
T Consensus 213 ~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i 292 (369)
T PRK06598 213 LPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEI 292 (369)
T ss_pred CCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHH
Confidence 011235678999999997 46553 45788832 23359999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 014424 346 KAAIKYAS 353 (425)
Q Consensus 346 ~~alk~a~ 353 (425)
+++|+++.
T Consensus 293 ~~~L~~~~ 300 (369)
T PRK06598 293 EEILAAHN 300 (369)
T ss_pred HHHHHhcC
Confidence 99999853
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-32 Score=273.63 Aligned_cols=233 Identities=21% Similarity=0.251 Sum_probs=186.3
Q ss_pred CceeEEEEc-cChHHHHHHHHHHc--CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEE
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAF--RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~--~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~ 164 (425)
+++||||+| +|.+|++++|+|.+ +|.++|+.+... .++ |+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-----------------------~sa--G~~~~~~~~~~~v~ 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-----------------------ESA--GETLRFGGKSVTVQ 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-----------------------CcC--CceEEECCcceEEE
Confidence 357999999 99999999999999 688888777541 011 44566777666664
Q ss_pred ecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCC--CCcEEecC
Q 014424 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNA 237 (425)
Q Consensus 165 ~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~--~~~IISna 237 (425)
++++++|. ++|+||+|++...+.+.++...++|+ +||+.++ +|+|+++||||.+.++. ..+||+||
T Consensus 58 ---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnP 130 (336)
T PRK08040 58 ---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVA 130 (336)
T ss_pred ---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECC
Confidence 46667775 79999999999999999999999988 5666655 36999999999965553 46899999
Q ss_pred CchhhhHHhHHHHHHhhcCeeEEEEEeeeecccccc------------cccCCCCCcccCcccCcceeecCC------CC
Q 014424 238 SCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK------------TVDGPSMKDWRGGRGASQNIIPSS------TG 299 (425)
Q Consensus 238 SCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~------------~vDg~~~kd~r~gr~aa~NIIP~~------tG 299 (425)
+|+|++++..|+||+++++|+++.|+|+|++||+.+ +++|.+.+...+.+++++|++|++ ++
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~ 210 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVR 210 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcch
Confidence 999999999999999999999999999999999753 223322112346677899999993 32
Q ss_pred h----hHHHHhhcCCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHh
Q 014424 300 A----AKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYA 352 (425)
Q Consensus 300 a----akav~kVLPeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a 352 (425)
. ..+++|+|..-+.+++.+|+||||++||+..++++++++++.+|+.++|+++
T Consensus 211 ~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~ 267 (336)
T PRK08040 211 EERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQG 267 (336)
T ss_pred HhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 2 2457788732223499999999999999999999999999999999999984
No 31
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.98 E-value=7.2e-31 Score=266.21 Aligned_cols=241 Identities=20% Similarity=0.221 Sum_probs=178.6
Q ss_pred CCceeEEEEc-cChHHHHHHHHHHcCCCceEEEE-cCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEE
Q 014424 87 DGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV-NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (425)
Q Consensus 87 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaI-nd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~ 164 (425)
||++||+|+| +|.+|++++|+|.++|+++|+++ ... ...-.. +++.|+. ... +.+.-.-+.+.+.
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~----~~~G~~--~~~~~~~-~~~------~~~~~~~~~~~v~ 67 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE----RSAGKT--YGEAVRW-QLD------GPIPEEVADMEVV 67 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh----hhcCCc--ccccccc-ccc------ccccccccceEEE
Confidence 4678999999 99999999999999999999998 332 110000 0111100 000 0000000122232
Q ss_pred ecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC---CCCCcEEeecCccccCC----------CC
Q 014424 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKP----------NM 231 (425)
Q Consensus 165 ~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps---~Dvp~vV~gVN~~~~~~----------~~ 231 (425)
..+++.+ .++|+||+|++...+.+.++...+.|++.++.|+.. +++|.+++++|++.|.. ..
T Consensus 68 -~~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~ 142 (349)
T PRK08664 68 -STDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDG 142 (349)
T ss_pred -eCCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCc
Confidence 2344433 379999999999988888888878898665555543 25789999999876632 13
Q ss_pred cEEecCCchhhhHHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCCh-h---HHHHhh
Q 014424 232 NIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGA-A---KAVGKV 307 (425)
Q Consensus 232 ~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGa-a---kav~kV 307 (425)
+||+||||+|||++++|+||++ |||+++.|||+|++|++++- .+..+.+++|++|+..+. + .|+.++
T Consensus 143 ~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~--------~~~~~~~~~N~~p~~~~~ehrh~~Ei~~~ 213 (349)
T PRK08664 143 FIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYP--------GVPSMDIVDNVIPYIGGEEEKIEKETLKI 213 (349)
T ss_pred eEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcc--------cchhhhhhcCcccccCchhhhhhHHHHHH
Confidence 6999999999999999999999 99999999999999998532 122456899999999876 2 344444
Q ss_pred c--------CCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhc
Q 014424 308 L--------PDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASE 354 (425)
Q Consensus 308 L--------PeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~ 354 (425)
| |.++.+++.+++|||+++||+.+++++++++++.+|++++|+++++
T Consensus 214 l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 214 LGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred hhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 4 4457889999999999999999999999999999999999999886
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.97 E-value=6.7e-31 Score=265.69 Aligned_cols=255 Identities=19% Similarity=0.208 Sum_probs=189.8
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCC--ccceEEEeCCCeEEECCEEEEEEec
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGV--FKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~--f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
+||||+| +|++|+.++|+|.++++++|+++.+. ....... +...|+. |.+. ...+ ..+.+ +.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~---~~~~g~~--~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS---PRSAGKR--YGEAVKWIEPGDM-----PEYV----RDLPI-VE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC---hhhcCCc--chhhccccccCCC-----cccc----ceeEE-Ee
Confidence 4999999 89999999999999999999988542 1110000 0111100 0000 0000 11222 22
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC---CCCCcEEeecCccccCC---------CCcEE
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKP---------NMNIV 234 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps---~Dvp~vV~gVN~~~~~~---------~~~II 234 (425)
.+++ .| .++|+||+|++...+.+.++...++|++.++.|+.. +++|+++|++|++.|.. ..+||
T Consensus 66 ~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iV 141 (341)
T TIGR00978 66 PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIV 141 (341)
T ss_pred CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEE
Confidence 2333 23 479999999999999999988888999655555553 35899999999876752 13599
Q ss_pred ecCCchhhhHHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCCh-h---HHHHhhcCC
Q 014424 235 SNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGA-A---KAVGKVLPD 310 (425)
Q Consensus 235 SnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGa-a---kav~kVLPe 310 (425)
+||+|+|+|++++|+||+++++|+++.|||+|++|+.++.. .+ .+.+++|++|+..+. + .|++++|+.
T Consensus 142 anPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~-----~~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~ 213 (341)
T TIGR00978 142 TNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPG-----VP---SMDILDNIIPHIGGEEEKIERETRKILGK 213 (341)
T ss_pred eCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCC-----Cc---cchhhCCeEecCcHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999996532 11 245799999999876 3 678899987
Q ss_pred CCC--------ceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCccccccCCceEee
Q 014424 311 LNG--------KLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSN 371 (425)
Q Consensus 311 L~g--------kit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~yte~~~VS~ 371 (425)
+.+ +++.+++|||+++||+.+++++++++++.+|++++|+++++.++...+.-+.+|+|-.
T Consensus 214 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 214 LENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred cccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 743 5999999999999999999999999999999999999998775544444455666544
No 33
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=4e-30 Score=259.81 Aligned_cols=235 Identities=16% Similarity=0.167 Sum_probs=182.1
Q ss_pred ceeEEEEc-cChHHHHHHHHHH--cCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEe
Q 014424 89 NTKVGING-FGRIGRLVLRVAA--FRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~--~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~ 165 (425)
|+||||+| +|.+|++++|+|. .+|.++++.+... + ++ |+.+.+.|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-------------~----------~a--G~~l~~~~~~l~~~- 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-------------E----------SA--GHSVPFAGKNLRVR- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-------------c----------cC--CCeeccCCcceEEe-
Confidence 36999999 9999999999999 5688887777552 0 11 33444555444443
Q ss_pred cCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC--CCCCcEEeecCccccCC--CCcEEecCCchh
Q 014424 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS--ADAPMFVVGVNEKTYKP--NMNIVSNASCTT 241 (425)
Q Consensus 166 ~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps--~Dvp~vV~gVN~~~~~~--~~~IISnaSCTT 241 (425)
+++..+| .++|+||.|++...+.+.++..+++|++.|..|+.. +|+|+++||||.+.+.. ..+||+||+|+|
T Consensus 58 --~~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~~ 133 (336)
T PRK05671 58 --EVDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSASA 133 (336)
T ss_pred --eCChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcHH
Confidence 2333345 379999999999999999999999998544444433 47999999999988764 268999999999
Q ss_pred hhHHhHHHHHHhhcCeeEEEEEeeeecccccc-cccC-----------CCCCcccCcccCcceeecCCC-----Chh---
Q 014424 242 NCLAPLAKVVHEEFGILEGLMTTVHATTATQK-TVDG-----------PSMKDWRGGRGASQNIIPSST-----GAA--- 301 (425)
Q Consensus 242 n~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~-~vDg-----------~~~kd~r~gr~aa~NIIP~~t-----Gaa--- 301 (425)
++++..|+||++.++++++.++|++++||+.+ .++. ..-..-.+.+++++|++|+.. |.+
T Consensus 134 t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE 213 (336)
T PRK05671 134 VALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALE 213 (336)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHH
Confidence 99999999999999999999999999999753 1111 100112457889999999874 432
Q ss_pred ----HHHHhhcCCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhh
Q 014424 302 ----KAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYAS 353 (425)
Q Consensus 302 ----kav~kVLPeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~ 353 (425)
.|++|+|-..+.+++.+|+||||++||+..++++++++++.+|++++|++++
T Consensus 214 ~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~ 269 (336)
T PRK05671 214 RRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP 269 (336)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC
Confidence 4577888433455999999999999999999999999999999999999543
No 34
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.97 E-value=1.6e-29 Score=256.12 Aligned_cols=232 Identities=18% Similarity=0.214 Sum_probs=178.0
Q ss_pred ceeEEEEc-cChHHHHHHHHHHc--CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEe
Q 014424 89 NTKVGING-FGRIGRLVLRVAAF--RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~--~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~ 165 (425)
++||+|+| +|++|++++|+|.+ +|.++++.+... .++ |+.+.++|+.+.+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-----------------------rsa--Gk~~~~~~~~~~v~- 60 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-----------------------RSA--GKKVTFEGRDYTVE- 60 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-----------------------CCC--CCeeeecCceeEEE-
Confidence 35999999 99999999999998 677887766431 011 23344455444443
Q ss_pred cCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCCC------CcEE
Q 014424 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKPN------MNIV 234 (425)
Q Consensus 166 ~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~~------~~II 234 (425)
..+++ .| .++|+||+|+|...++++++...++|+ +||++++ +++|+++||+|.+.++.. .+||
T Consensus 61 ~~~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iI 134 (344)
T PLN02383 61 ELTED--SF--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALI 134 (344)
T ss_pred eCCHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEE
Confidence 22333 34 379999999999999999999888888 5666555 369999999998887652 3499
Q ss_pred ecCCchhhhHHhHHHHHHhhcCeeEEEEEeeeecccccc-cc-----------cCCCCCcccCcccCcceeecCCC----
Q 014424 235 SNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQK-TV-----------DGPSMKDWRGGRGASQNIIPSST---- 298 (425)
Q Consensus 235 SnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~-~v-----------Dg~~~kd~r~gr~aa~NIIP~~t---- 298 (425)
+||+|+|++++..|+||+++++|+++.++|++++||..+ .+ .+......+.+...++|++|+.+
T Consensus 135 anPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~ 214 (344)
T PLN02383 135 ANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQE 214 (344)
T ss_pred ECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCcccc
Confidence 999999999999999999999999999999999999742 22 22111123567788999999974
Q ss_pred -Chh-------HHHHhhcCCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHh
Q 014424 299 -GAA-------KAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYA 352 (425)
Q Consensus 299 -Gaa-------kav~kVLPeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a 352 (425)
|.+ .+++|++-.-+.+++.+|+||||++||+..++++++++++.+|++++|+++
T Consensus 215 ~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~ 276 (344)
T PLN02383 215 NGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASA 276 (344)
T ss_pred CCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 322 334477722233499999999999999999999999999999999999984
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.95 E-value=5.4e-26 Score=230.26 Aligned_cols=238 Identities=19% Similarity=0.192 Sum_probs=171.7
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
||+||||+| +|++|+.++|.|.++|+++++++.+.....+.+ ...|+++... . .. .+++
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l------~~~~~~~~~~----------~---~~-~~~~ 60 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPL------SDVHPHLRGL----------V---DL-VLEP 60 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcch------HHhCcccccc----------c---Cc-eeec
Confidence 457999999 799999999999999999999987631011111 0111111100 0 00 1111
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC----C--C------------------CCcEEeec
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS----A--D------------------APMFVVGV 222 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps----~--D------------------vp~vV~gV 222 (425)
.+. ..| .++|+||.|++.....+.+...+++|+ .||++++ . | +|..+||+
T Consensus 61 ~~~--~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~ 134 (343)
T PRK00436 61 LDP--EIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPEL 134 (343)
T ss_pred CCH--HHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCcc
Confidence 121 223 369999999999999999999988887 6666654 2 3 68999999
Q ss_pred CccccCCCCcEEecCCchhhhHHhHHHHHHhhcCee--EEEEEeeeecccccc-cccCCCCCcccCcccCcceeecCCCC
Q 014424 223 NEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGIL--EGLMTTVHATTATQK-TVDGPSMKDWRGGRGASQNIIPSSTG 299 (425)
Q Consensus 223 N~~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~--~~~~TTvhAvt~~q~-~vDg~~~kd~r~gr~aa~NIIP~~tG 299 (425)
|.+.+.. .+||+||+|+|++++..|+||++..+|+ ++.++|++++||..+ .++..+. ..+.+.-.++|++|+.
T Consensus 135 ~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~-~~~~~~~~~y~~~~h~-- 210 (343)
T PRK00436 135 NREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLF-SEVNENLRPYKVGGHR-- 210 (343)
T ss_pred CHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccc-hhhcCCeeecccCCCC--
Confidence 9988874 5899999999999999999999999998 899999999999864 3443321 1122211244444443
Q ss_pred hhHHHHhhcCCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcC
Q 014424 300 AAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEG 355 (425)
Q Consensus 300 aakav~kVLPeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~ 355 (425)
..+++.+.+..+.++++.+++|||+++||++.++++++++++.+|++++|++++++
T Consensus 211 h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~ 266 (343)
T PRK00436 211 HTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYAD 266 (343)
T ss_pred CHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 23555555543322699999999999999999999999999999999999987754
No 36
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.94 E-value=4.5e-25 Score=226.49 Aligned_cols=254 Identities=13% Similarity=0.101 Sum_probs=170.7
Q ss_pred ccCCccccCCCCCCceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCe
Q 014424 75 TEIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDST 153 (425)
Q Consensus 75 ~~~~~~~~~~~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~ 153 (425)
...+++...+ .|++||+|+| +|++|++++|+|.+||+++|+.+.......+ . +...|. .
T Consensus 26 ~~~~~~~~~~--~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~----~--i~~~~~------------~ 85 (381)
T PLN02968 26 VSSASSSVKS--EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQ----S--FGSVFP------------H 85 (381)
T ss_pred cccCCCcccc--ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCC----C--chhhCc------------c
Confidence 3444444444 3556999999 9999999999999999999988865200000 0 000000 0
Q ss_pred EEECCEEEEEEecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CC--------CCcEEe
Q 014424 154 LEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----AD--------APMFVV 220 (425)
Q Consensus 154 l~i~Gk~I~v~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~D--------vp~vV~ 220 (425)
+.+.....++..+++ +| .++|+||.|++...+.+.++. ++.|+ +||+.++ ++ +|..+|
T Consensus 86 --l~~~~~~~~~~~~~~--~~--~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~p 156 (381)
T PLN02968 86 --LITQDLPNLVAVKDA--DF--SDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAP 156 (381)
T ss_pred --ccCccccceecCCHH--Hh--cCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCc
Confidence 111111111111222 24 379999999999999999887 57776 4555544 23 688999
Q ss_pred ecCccc-cC---------CCCcEEecCCchhhhHHhHHHHHHhhcCe--eEEEEEeeeeccccccc-ccCCCCCcc-cCc
Q 014424 221 GVNEKT-YK---------PNMNIVSNASCTTNCLAPLAKVVHEEFGI--LEGLMTTVHATTATQKT-VDGPSMKDW-RGG 286 (425)
Q Consensus 221 gVN~~~-~~---------~~~~IISnaSCTTn~Lap~lk~L~d~fGI--~~~~~TTvhAvt~~q~~-vDg~~~kd~-r~g 286 (425)
++|.+. |. ...+||+||+|+|+++...|+||+++++| +++.+++++++||..+. ++..+.... ..-
T Consensus 157 e~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~ 236 (381)
T PLN02968 157 ELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGI 236 (381)
T ss_pred ccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccc
Confidence 999763 43 23579999999999999999999999999 78999999999998542 222110000 011
Q ss_pred ccCcceeecCCCCh-hHHHHhhc-CCCCCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcC-CCCcc
Q 014424 287 RGASQNIIPSSTGA-AKAVGKVL-PDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEG-SLKGI 360 (425)
Q Consensus 287 r~aa~NIIP~~tGa-akav~kVL-PeL~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~-~lkgi 360 (425)
|..++|.+|+. +. ...+.+++ +++ +++.+++|||+++||+..++++++++++.+|+.++|++++++ ++-.+
T Consensus 237 ~~y~~~~h~h~-pEie~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~ 310 (381)
T PLN02968 237 GAYGVTRHRHV-PEIEQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKV 310 (381)
T ss_pred eeeccCCCCCc-chHHHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEe
Confidence 33445555443 22 12233443 333 499999999999999999999999999999999999996543 44433
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.93 E-value=3.9e-25 Score=224.35 Aligned_cols=235 Identities=17% Similarity=0.157 Sum_probs=168.6
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
+||||+| +|++|++++|.|.++|+++++++-+...+... . +...|+.+.+.. ...+ ...+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk---~--~~~~~~~l~~~~-------------~~~~-~~~~ 61 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGK---P--VSEVHPHLRGLV-------------DLNL-EPID 61 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCC---C--hHHhCccccccC-------------Ccee-ecCC
Confidence 4999999 89999999999999999999977432110000 0 011122111100 0111 1122
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC----C--------------------CCCcEEeecCc
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS----A--------------------DAPMFVVGVNE 224 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps----~--------------------Dvp~vV~gVN~ 224 (425)
+++ |. .++|+||.|++...+.+.++..+++|+ .||+.++ + ++|..+||+|.
T Consensus 62 ~~~--~~-~~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~ 136 (346)
T TIGR01850 62 EEE--IA-EDADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR 136 (346)
T ss_pred HHH--hh-cCCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence 222 22 279999999999999999999888886 5555544 2 48899999998
Q ss_pred cccCCCCcEEecCCchhhhHHhHHHHHHhhcCee--EEEEEeeeecccccc-cccCCCCCcccCcccCcceeecCCCChh
Q 014424 225 KTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGIL--EGLMTTVHATTATQK-TVDGPSMKDWRGGRGASQNIIPSSTGAA 301 (425)
Q Consensus 225 ~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~--~~~~TTvhAvt~~q~-~vDg~~~kd~r~gr~aa~NIIP~~tGaa 301 (425)
+.+.. .+||+||+|+|+++...|+||++++.|+ ++.++|++++||+.+ .++..+. .. ...|+.|+.-+.+
T Consensus 137 ~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~-~~-----~~~~~~~y~~~~h 209 (346)
T TIGR01850 137 EEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHF-PE-----VNENLRPYKVTGH 209 (346)
T ss_pred HHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccc-hh-----hcCCeeeeccCCc
Confidence 88754 6799999999999999999999999887 799999999999864 3333221 11 1356777754433
Q ss_pred ---HHHHhhcCCC---CCceeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcC
Q 014424 302 ---KAVGKVLPDL---NGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEG 355 (425)
Q Consensus 302 ---kav~kVLPeL---~gkit~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~ 355 (425)
+|+.+.+..+ +.+++.+++|||+++||+..++++++++++.+|++++|++++++
T Consensus 210 ~h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~ 269 (346)
T TIGR01850 210 RHTPEIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYAD 269 (346)
T ss_pred CcHHHHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCC
Confidence 3343333221 23599999999999999999999999999999999999988864
No 38
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.92 E-value=5.1e-24 Score=213.26 Aligned_cols=225 Identities=13% Similarity=0.064 Sum_probs=166.2
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
|++||||+| +|.+|++++|+|.+||+++++++.... +..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~---------------------------~~~~------------ 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK---------------------------RKDA------------ 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC---------------------------CCcc------------
Confidence 678999999 999999999999999999998886420 0000
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCC--CCcEEecCCc
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP--NMNIVSNASC 239 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~--~~~IISnaSC 239 (425)
...+..|. ++|+||.|++...+++.++...+.|++ ||+.++ +++|..+||+|++..+. ..++|+||+|
T Consensus 42 -~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~~--VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC 116 (313)
T PRK11863 42 -AARRELLN--AADVAILCLPDDAAREAVALIDNPATR--VIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGC 116 (313)
T ss_pred -cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCCE--EEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCc
Confidence 01112343 699999999999999999998888884 555544 36999999999776553 5689999999
Q ss_pred hhhhHHhHHHHHHhhcCeeEEEEEeeeeccc---cc-ccccCCCCCcccCcccCcceeecCCCC-hh---HHHHhhcCCC
Q 014424 240 TTNCLAPLAKVVHEEFGILEGLMTTVHATTA---TQ-KTVDGPSMKDWRGGRGASQNIIPSSTG-AA---KAVGKVLPDL 311 (425)
Q Consensus 240 TTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~---~q-~~vDg~~~kd~r~gr~aa~NIIP~~tG-aa---kav~kVLPeL 311 (425)
+++++...|+||+++..|++...++++++|| .. +..+..+. .--....|++||.-| .+ +|+.+.|..+
T Consensus 117 ~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~----~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~ 192 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEA----APDGKAPAFRLYGLGLAHKHLPEMQAHAGLA 192 (313)
T ss_pred HHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchHHHhh----hhhhhccCeeeccCCcCCcchHHHHHHhccc
Confidence 9999999999999986676666799999964 32 12221110 001145699999977 55 5566666443
Q ss_pred CCceeEEEEEeeeccceeeeEEEEe---cCCCCHHHHHHHHHHhhcC-CCCccc
Q 014424 312 NGKLTGMAFRVPTPNVSVVDLTCRL---AKGASYEDVKAAIKYASEG-SLKGIL 361 (425)
Q Consensus 312 ~gkit~~avRVPv~~gs~~dltv~l---ek~~s~eeI~~alk~a~~~-~lkgil 361 (425)
-++.-+..-+|+.+|++..+++++ +++++.+|++++|++++++ ++--++
T Consensus 193 -~~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~ 245 (313)
T PRK11863 193 -RRPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVA 245 (313)
T ss_pred -cCcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEe
Confidence 123333345899999999999997 8889999999999998864 444444
No 39
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.90 E-value=7.9e-24 Score=203.31 Aligned_cols=238 Identities=16% Similarity=0.132 Sum_probs=174.1
Q ss_pred eEE-EEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 91 KVG-ING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 91 kVa-InG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
|+| |+| +|.+|++++-+|.+||.|+|.-+... . .|...+|.-..++..-.-|.=.-..+.|. +-+
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS---~---------RSAGK~ya~a~~wkqt~~lp~~~~e~~V~-ec~ 71 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGAS---K---------RSAGKRYAFAGNWKQTDLLPESAHEYTVE-ECT 71 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeeccc---c---------cccCCceEecccchhcccccchhhhhhHh-hcC
Confidence 566 999 99999999999999999997655432 1 12222222222221000111111344453 446
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccCC---C--------Cc
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP---N--------MN 232 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~~---~--------~~ 232 (425)
++.| .++||||+..+...+.|.-+.+.++|- +|+|+++ +++|++||+||+++++. . .-
T Consensus 72 ~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~ 145 (361)
T KOG4777|consen 72 ADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGA 145 (361)
T ss_pred hhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCce
Confidence 6666 489999999998888887777777777 9999987 35999999999999873 1 24
Q ss_pred EEecCCchhhhHHhHHHHHHhhc-CeeEEEEEeeeecccccccccCCC-CCcccCcccCcceeecCCCChh----HHHHh
Q 014424 233 IVSNASCTTNCLAPLAKVVHEEF-GILEGLMTTVHATTATQKTVDGPS-MKDWRGGRGASQNIIPSSTGAA----KAVGK 306 (425)
Q Consensus 233 IISnaSCTTn~Lap~lk~L~d~f-GI~~~~~TTvhAvt~~q~~vDg~~-~kd~r~gr~aa~NIIP~~tGaa----kav~k 306 (425)
||.|+||+|..+...|||||++| .|++..++||||+||+. .. + ..+-.+..||+|.+.|.. -+..|
T Consensus 146 iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG-----~apg---v~~vdildnilp~iggee~k~ewet~k 217 (361)
T KOG4777|consen 146 IIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAG-----AAPG---VELVDILDNILPGIGGEENKFEWETAK 217 (361)
T ss_pred EEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCC-----cCCC---chHHHHHHhhcCCCCccchhhhHHHHH
Confidence 99999999999999999999999 69999999999999983 21 1 112236679999998875 33456
Q ss_pred hcCCCC-----------CceeEEEEEeeeccceeeeEEEEecCC--CCHHHHHHHHHHhhcC
Q 014424 307 VLPDLN-----------GKLTGMAFRVPTPNVSVVDLTCRLAKG--ASYEDVKAAIKYASEG 355 (425)
Q Consensus 307 VLPeL~-----------gkit~~avRVPv~~gs~~dltv~lek~--~s~eeI~~alk~a~~~ 355 (425)
+|-.++ .++++.|-|||+.+||+..+..++.-+ .+.+|+++++.++.-.
T Consensus 218 iL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d 279 (361)
T KOG4777|consen 218 ILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVLD 279 (361)
T ss_pred hhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccCC
Confidence 663322 246789999999999999999999844 3789999999987643
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.86 E-value=5.9e-21 Score=190.57 Aligned_cols=225 Identities=14% Similarity=0.049 Sum_probs=168.0
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
.||+|+| .|+.|.+++|+|..||++|++.+.... . | ...+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~---~--------------~----------------------~~~~ 42 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR---R--------------K----------------------DAAE 42 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc---c--------------c----------------------CcCC
Confidence 4899999 999999999999999999999886520 0 0 0001
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC---CCCCcEEeecCccccCC--CCcEEecCCchhhh
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS---ADAPMFVVGVNEKTYKP--NMNIVSNASCTTNC 243 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps---~Dvp~vV~gVN~~~~~~--~~~IISnaSCTTn~ 243 (425)
++++ + .++|+||.|++...+++.++...++|++.|.+|+.. +++|..+||+|++..+. ..++|+||+|++++
T Consensus 43 ~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa 119 (310)
T TIGR01851 43 RAKL-L--NAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPTG 119 (310)
T ss_pred HhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHHHH
Confidence 1222 1 268999999999999999998888888444344432 36999999999776553 46899999999999
Q ss_pred HHhHHHHHHhhcCeeEEEEEeeeeccc---cc-ccccCCCCCcccCcc--cCcceeecCCCC-hh---HHHHhhcCCCCC
Q 014424 244 LAPLAKVVHEEFGILEGLMTTVHATTA---TQ-KTVDGPSMKDWRGGR--GASQNIIPSSTG-AA---KAVGKVLPDLNG 313 (425)
Q Consensus 244 Lap~lk~L~d~fGI~~~~~TTvhAvt~---~q-~~vDg~~~kd~r~gr--~aa~NIIP~~tG-aa---kav~kVLPeL~g 313 (425)
++..|+||+++..|++...++++++|| .. +..+..+ +..+ ....|+-||.-+ .+ +|+.+.|..+ -
T Consensus 120 ~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~----~q~~~~e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~ 194 (310)
T TIGR01851 120 FIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYE----QGSADNPSLQPFRIYGLALTHKHLPEMRVHSGLA-L 194 (310)
T ss_pred HHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhh----hcccchhhccCceeccCCCCCCcHHHHHHHhCCC-C
Confidence 999999999987777776899999987 32 2222222 1111 134578899865 55 5555555432 3
Q ss_pred ceeEEEEEeeeccceeeeEEEEe---cCCCCHHHHHHHHHHhhcC-CCCccc
Q 014424 314 KLTGMAFRVPTPNVSVVDLTCRL---AKGASYEDVKAAIKYASEG-SLKGIL 361 (425)
Q Consensus 314 kit~~avRVPv~~gs~~dltv~l---ek~~s~eeI~~alk~a~~~-~lkgil 361 (425)
++.-+..-+|+.+|-+..+++++ ++.++.+|+.++|++++++ |+--++
T Consensus 195 ~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~ 246 (310)
T TIGR01851 195 PPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVA 246 (310)
T ss_pred CEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEe
Confidence 46667778999999999999999 8889999999999998865 555554
No 41
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.71 E-value=5.4e-16 Score=155.89 Aligned_cols=283 Identities=17% Similarity=0.141 Sum_probs=175.1
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
||+||+|+| .|+.|-+++|+|.+||++|+..+... ++ .--.+...|.++.+.+. +. ++.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~----~~--~g~~~~~~~p~l~g~~~------l~--------~~~ 60 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR----ER--AGKPVSDVHPNLRGLVD------LP--------FQT 60 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech----hh--cCCchHHhCcccccccc------cc--------ccc
Confidence 568999999 99999999999999999996655442 11 00011222333332211 11 123
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC--C----------------C-CCcEEeecCcccc
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS--A----------------D-APMFVVGVNEKTY 227 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps--~----------------D-vp~vV~gVN~~~~ 227 (425)
.+++.+ ...++|+||.|+....+++.++..++.|.+.+.+|+.. + | ..-.|||.-+-+.
T Consensus 61 ~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~ 138 (349)
T COG0002 61 IDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHR 138 (349)
T ss_pred CChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCH
Confidence 345544 23468999999999999999999999999866666633 1 1 1356776653332
Q ss_pred CC--CCcEEecCCchhhhHHhHHHHHHhhcCeeEEEEEeeeeccc---cccc-ccCCCCCcccCcccCcceeecCCC---
Q 014424 228 KP--NMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTA---TQKT-VDGPSMKDWRGGRGASQNIIPSST--- 298 (425)
Q Consensus 228 ~~--~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~---~q~~-vDg~~~kd~r~gr~aa~NIIP~~t--- 298 (425)
+. ..+.|+||+|..||....|+||-+.-=|.--..-++.+.|| ..+- ....+ ......|+.||.-
T Consensus 139 e~i~~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~------~~e~~~~~~~Y~~~~H 212 (349)
T COG0002 139 EKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNH------FPEVNDSLRPYGLTGH 212 (349)
T ss_pred HHHhcCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcccccc------chhhcccccccccccc
Confidence 21 46899999999999988999988752222111123444444 3211 00101 0113448999863
Q ss_pred ChhHHHHhhcCCCCCc---eeEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcC-CCCccccccCCceEeecCC
Q 014424 299 GAAKAVGKVLPDLNGK---LTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFV 374 (425)
Q Consensus 299 Gaakav~kVLPeL~gk---it~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~-~lkgil~yte~~~VS~Df~ 374 (425)
-...|+.+-|..|.++ +.-+..-+|..+|-+..+++.+++.++.+||.+++++++++ ++-.|+....-|-+ -+.+
T Consensus 213 rH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~-k~V~ 291 (349)
T COG0002 213 RHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDT-KAVA 291 (349)
T ss_pred CchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCCh-hhhc
Confidence 3336666666666543 44455559999999999999999999999999999999976 45444432111111 1234
Q ss_pred CCCcceEeeCCCcccccC--CeEEEEEEeCCC
Q 014424 375 GDSRSSIFDAKAGIGLSA--SFMKLVSWYDNE 404 (425)
Q Consensus 375 ~~~~s~i~d~~~~~~~~~--~~vKl~~WyDNE 404 (425)
|..+.-|+ ...++ +.+-+++=.||=
T Consensus 292 GsN~cdIg-----f~~d~~~~rvvvvsaIDNL 318 (349)
T COG0002 292 GSNFCDIG-----FAVDERTGRVVVVSAIDNL 318 (349)
T ss_pred CCcceEEE-----EEEcCCCCEEEEEEEeccc
Confidence 54433332 22222 466777888884
No 42
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.61 E-value=7.1e-15 Score=146.70 Aligned_cols=152 Identities=20% Similarity=0.188 Sum_probs=112.4
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHH--HhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKY--MAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~--~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
++||||+|+|.||+.++..+.+.++++++++.|. +++. +..--+ +|. ... +.|.+- +.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi--d~es~gla~A~~----~Gi---~~~--------~~~ie~-LL-- 63 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI--DPESDGLARARR----LGV---ATS--------AEGIDG-LL-- 63 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC--ChhhHHHHHHHH----cCC---Ccc--------cCCHHH-HH--
Confidence 6899999999999998888887888999999985 4432 211111 221 000 111000 11
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-CCCCcEEeecCccccCC--CCcEEecCCchhhh
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-ADAPMFVVGVNEKTYKP--NMNIVSNASCTTNC 243 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-~Dvp~vV~gVN~~~~~~--~~~IISnaSCTTn~ 243 (425)
++.+|. ++|+||+||+.....+.++.++++|+ .+|+..+ .+.|++||+||.+.... ..++|+||+|.|+.
T Consensus 64 ---~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~ 136 (302)
T PRK08300 64 ---AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIP 136 (302)
T ss_pred ---hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHH
Confidence 112343 69999999999999999999999987 6666554 57999999999776653 46899999999999
Q ss_pred HHhHHHHHHhhcCeeEEEEEeeeecc
Q 014424 244 LAPLAKVVHEEFGILEGLMTTVHATT 269 (425)
Q Consensus 244 Lap~lk~L~d~fGI~~~~~TTvhAvt 269 (425)
++..|+++++. ++.++. +||++.+
T Consensus 137 ~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 137 IVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHhcccCcC-ceeeee-eeehhhc
Confidence 99999998765 888876 9999877
No 43
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.36 E-value=2e-12 Score=128.41 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=109.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHH--HhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKY--MAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~--~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
+||||+|.|+||+..+..+++.+++++++|.++ +++. +..--+ +|. ...+.+.+. +.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~--d~es~~la~A~~----~Gi-----------~~~~~~~e~-ll--- 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI--DPESDGLARARE----LGV-----------KTSAEGVDG-LL--- 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC--CcccHHHHHHHH----CCC-----------CEEECCHHH-Hh---
Confidence 699999999999988777776778999999985 3332 211111 111 111111000 00
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccccCC--CCcEEecCCchhhhHH
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP--NMNIVSNASCTTNCLA 245 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~~~~--~~~IISnaSCTTn~La 245 (425)
.+.++|+||+||+.....+.+...+++|. .|+.-.|..+.|++||+||.+.... +.++|++++|.|+.++
T Consensus 61 -------~~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 61 -------ANPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred -------cCCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 01368999999999999999999999886 3444445567999999999666543 4789999999999999
Q ss_pred hHHHHHHhhcCeeEEEEEeeeeccc
Q 014424 246 PLAKVVHEEFGILEGLMTTVHATTA 270 (425)
Q Consensus 246 p~lk~L~d~fGI~~~~~TTvhAvt~ 270 (425)
..++.+++...+ ..++||++.+.
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 999999998755 56788998886
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.14 E-value=2.9e-11 Score=104.93 Aligned_cols=113 Identities=28% Similarity=0.277 Sum_probs=77.4
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
||||+| +|++|+.++|+|.+||+++++.+-....+. -.++...++.+.+. ..+.+. ..++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-----g~~~~~~~~~~~~~-------------~~~~~~-~~~~ 61 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSA-----GKPLSEVFPHPKGF-------------EDLSVE-DADP 61 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTT-----TSBHHHTTGGGTTT-------------EEEBEE-ETSG
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecccc-----CCeeehhccccccc-------------cceeEe-ecch
Confidence 799999 999999999999999999999987642101 11112222211111 112222 2233
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-----CCCCcEEeecCccccC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTYK 228 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~~ 228 (425)
+.+ .++|+||.|++...+.+.++..++.|+ .||+.++ ++.|+++|++|.+.+.
T Consensus 62 ~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 62 EEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp HHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 333 389999999999999999999999999 5666555 3599999999987653
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.00 E-value=1.1e-09 Score=102.12 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=76.8
Q ss_pred HHHHHhh-cCeeEEEEEeeeeccccccc------------ccCCCCCcccCcccCcceeecCCCC-hh------HH----
Q 014424 248 AKVVHEE-FGILEGLMTTVHATTATQKT------------VDGPSMKDWRGGRGASQNIIPSSTG-AA------KA---- 303 (425)
Q Consensus 248 lk~L~d~-fGI~~~~~TTvhAvt~~q~~------------vDg~~~kd~r~gr~aa~NIIP~~tG-aa------ka---- 303 (425)
|+||+++ ++++++.++|+|++||+.+- +.+...+.......+++|++|+..+ .+ ++
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6889998 99999999999999998652 2221112334566789999999866 22 11
Q ss_pred ---HHhhcCCCCCceeEEEEEeeeccceeeeEEEEec-CCCCHHHHHHHHHHh
Q 014424 304 ---VGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLA-KGASYEDVKAAIKYA 352 (425)
Q Consensus 304 ---v~kVLPeL~gkit~~avRVPv~~gs~~dltv~le-k~~s~eeI~~alk~a 352 (425)
.++++..- .+++.+|+|||+++||+..++++++ ++.+.+++.++|.+.
T Consensus 81 ~~~~~~~l~~~-~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGFP-PRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTET-TEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred hccccceeecc-ccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 13444322 2799999999999999999999995 777777777777665
No 46
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=98.81 E-value=1.4e-07 Score=91.29 Aligned_cols=284 Identities=18% Similarity=0.174 Sum_probs=150.0
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
.+||+..| -|+-|+.++|++.+||.+|+..+... ..+- .-++ + |-+ .++.. ..|...
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssr--el~G--qkl~-~--ytk--~eiqy---~~lst~---------- 76 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSR--ELAG--QKLE-V--YTK--LEIQY---ADLSTV---------- 76 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehh--hhcC--Cccc-C--cch--hheee---cccchh----------
Confidence 36999999 79999999999999999998877652 0100 0000 1 000 00110 011111
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCC--CCC--cEEeecCcc----ccCCCCcEEecCCc
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSA--DAP--MFVVGVNEK----TYKPNMNIVSNASC 239 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~--Dvp--~vV~gVN~~----~~~~~~~IISnaSC 239 (425)
|...+. ....+|..+.+......+.+....--.--|-++|+-..+ -.| -.+||.-+- .+. ..+.|+||+|
T Consensus 77 D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPGC 154 (340)
T KOG4354|consen 77 DAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPGC 154 (340)
T ss_pred hHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCCc
Confidence 111110 011345555555433333333222223334455533221 245 567766432 222 4678999999
Q ss_pred hhhh----HHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHHhhcCCCCCce
Q 014424 240 TTNC----LAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKL 315 (425)
Q Consensus 240 TTn~----Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~kVLPeL~gki 315 (425)
+.+. |.|++|.+.-.-.|- .+-.|||+.. +++.+ -+-.-++.|+||+.-..+..++.|-..++-.+
T Consensus 155 YaTgsQl~l~Pllk~i~g~p~if-----gvSGySGAGt---kpspk--Nd~~~l~nnlipY~ltdHiHerEIs~r~k~~V 224 (340)
T KOG4354|consen 155 YATGSQLPLVPLLKAILGKPEIF-----GVSGYSGAGT---KPSPK--NDYSELANNLIPYGLTDHIHEREISQRSKVTV 224 (340)
T ss_pred ccccCcccchHHHHHhcCCccee-----eeccccCCCC---CCCCc--cCHHHHhcCCccccccccchhHhHHHhhCCce
Confidence 9887 788888765322211 1123343321 22211 11223688999997444333333322333223
Q ss_pred eEEEEEeeeccceeeeEEEEecCCCCHHHHHHHHHHhhcC-CCCccccccCCceEeecCCCCCcceEeeCCCcccccCCe
Q 014424 316 TGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASF 394 (425)
Q Consensus 316 t~~avRVPv~~gs~~dltv~lek~~s~eeI~~alk~a~~~-~lkgil~yte~~~VS~Df~~~~~s~i~d~~~~~~~~~~~ 394 (425)
.-|-.--|-+.|....+++.+++.++.||++++++..+|+ +|-.++ .|=|+| -|..|..|-.+ - +...-.-++.
T Consensus 225 aF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~--ddvPlv-kdv~gsh~v~~-g-gF~~~~~g~R 299 (340)
T KOG4354|consen 225 AFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVL--DDVPLV-KDVRGSHYVHM-G-GFPDRIPGDR 299 (340)
T ss_pred eechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeee--ccccce-eccCCcceeEe-c-cccCCCCCce
Confidence 3333335778888889999999999999999999999876 444443 334554 35555544332 1 1111122334
Q ss_pred EEEEEEeCCCc-chhhhH
Q 014424 395 MKLVSWYDNEW-GYSNRV 411 (425)
Q Consensus 395 vKl~~WyDNE~-gys~r~ 411 (425)
+-+++=-||-. |=+.+-
T Consensus 300 avii~tIDNLlKGAatQa 317 (340)
T KOG4354|consen 300 AVIISTIDNLLKGAATQA 317 (340)
T ss_pred EEEEEehhhhhhhHHHHH
Confidence 56777778743 344433
No 47
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.29 E-value=1.6e-06 Score=74.88 Aligned_cols=111 Identities=26% Similarity=0.268 Sum_probs=67.9
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
||||+| +|++|+.+++.+.++++++++++.+. .......++ ..|++..+ + +.. +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~---~~~~~~~~~--~~~~~~~~---------~--------~~~--~~ 56 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS---ARSAGKRVS--EAGPHLKG---------E--------VVL--EL 56 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec---hhhcCcCHH--HHCccccc---------c--------ccc--cc
Confidence 689999 79999999999999889999999442 111000000 01111100 0 001 11
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHH---HHHhCCCCEEEEeCCC-----CCCCcEEeecCcccc
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKAS---AHMKGGAKKVVISAPS-----ADAPMFVVGVNEKTY 227 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~---~hl~aGakkVVISaps-----~Dvp~vV~gVN~~~~ 227 (425)
+..+|...++|+||.|++.....+... ..++.|. ++|+..+ .|.|..++++|.+.+
T Consensus 57 ~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 57 EPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred ccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 222343458999999998776666433 2234444 7776655 368999999997754
No 48
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.94 E-value=0.00016 Score=73.43 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=61.8
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
++||||+|+|.||+.+++++.++|+++||+|-+.. +++.+. . ..+ ++...+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~-----~-~~~----------------------v~~~~d 53 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD-----T-ETP----------------------VYAVAD 53 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh-----h-cCC----------------------ccccCC
Confidence 57999999999999999999999999999998852 222211 0 000 111111
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEe
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVIS 209 (425)
.+. +. .++|+|+-|++.....+.+...|++|. .||.|
T Consensus 54 ~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 54 DEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred HHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 111 11 469999999999999999999999887 34444
No 49
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.94 E-value=3e-05 Score=76.44 Aligned_cols=90 Identities=26% Similarity=0.290 Sum_probs=61.0
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
|||||+|+|+||+.+++.+.+.++++++++.+.....+.....+ +. .+.++ .+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~-----------------~~-------~~~~~--~d~ 55 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL-----------------GE-------AVRVV--SSV 55 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh-----------------cc-------CCeee--CCH
Confidence 59999999999999999999888899988875311111110000 00 11222 133
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
+++ +..+|+|+|||+...-.+.+...|++|...++.
T Consensus 56 ~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~ 91 (265)
T PRK13303 56 DAL---PQRPDLVVECAGHAALKEHVVPILKAGIDCAVI 91 (265)
T ss_pred HHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEe
Confidence 334 246899999999888889999999998644433
No 50
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.93 E-value=2.6e-05 Score=77.08 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=87.7
Q ss_pred CceeEEEEccChHHHHHHHHHHcC--CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEe
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFR--DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~--~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~ 165 (425)
|.+||||+|+|.||+.+.+.|... +.+++++|++. +++....+. + . ..+
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~~~~~-----------------~-~-------~~~-- 51 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLPPALA-----------------G-R-------VAL-- 51 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHHHHhh-----------------c-c-------Ccc--
Confidence 678999999999999999998764 34899999885 222111110 0 0 111
Q ss_pred cCCCCCC-CCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCC-CCCCCcEEeecCccccC---CCCcEEecCCch
Q 014424 166 KRDPAEI-PWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP-SADAPMFVVGVNEKTYK---PNMNIVSNASCT 240 (425)
Q Consensus 166 ~~dp~~i-~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISap-s~Dvp~vV~gVN~~~~~---~~~~IISnaSCT 240 (425)
..+.+++ .| ..|+|+||.|...-+|+++..|++|..-+++|-- -.|. +..++..+ ....-|--||-.
T Consensus 52 ~~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~-----~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 52 LDGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADD-----ALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred cCCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCH-----HHHHHHHHHHHhCCCEEEEeChH
Confidence 1234443 33 6899999999999999999999999988888732 2331 11111111 112233345555
Q ss_pred hhhHHhHHHHHHhhcCeeEEEEEeee
Q 014424 241 TNCLAPLAKVVHEEFGILEGLMTTVH 266 (425)
Q Consensus 241 Tn~Lap~lk~L~d~fGI~~~~~TTvh 266 (425)
.-+|--+ +.. ...|+.++.+||--
T Consensus 124 igGlD~l-~aa-~~~~~~~v~~~t~K 147 (267)
T PRK13301 124 IAGLDYL-QAV-AGRDDAEVVYESRK 147 (267)
T ss_pred HHhHHHH-HHh-hccCceEEEEEEec
Confidence 5554322 222 34789998887764
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.64 E-value=0.00018 Score=69.51 Aligned_cols=143 Identities=28% Similarity=0.295 Sum_probs=87.5
Q ss_pred eeEEEEccChHHHHHHHHHHcC-CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~-~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
++|+|+|+|+||+.+++.+.+. -+|+++++-|. +.+..-.+.+ + +.++.. .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~~--~------------------~~~~~~-----s~ 53 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELEA--S------------------VGRRCV-----SD 53 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHHh--h------------------cCCCcc-----cc
Confidence 4899999999999999999865 36999999984 4544333321 1 111110 11
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-CCCCcEEeecCccc--c-CCCCcEEecCCchhhhH
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-ADAPMFVVGVNEKT--Y-KPNMNIVSNASCTTNCL 244 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-~Dvp~vV~gVN~~~--~-~~~~~IISnaSCTTn~L 244 (425)
.+++ -.++|+++||.+.-.-+++.+..|++|...+|+|--. .| | |.-+.. + .....-|--||-..-+|
T Consensus 54 ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad-~----~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 54 IDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALAD-E----GLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred HHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccC-h----HHHHHHHHHHhcCCcEEEecCccchhH
Confidence 2222 1478999999999989999999999999888886532 22 1 111111 0 01223344455444444
Q ss_pred HhHHHHHHhhcCeeEEEEEeeeecc
Q 014424 245 APLAKVVHEEFGILEGLMTTVHATT 269 (425)
Q Consensus 245 ap~lk~L~d~fGI~~~~~TTvhAvt 269 (425)
-- |+.+ ..-+|+++..||.-...
T Consensus 126 D~-l~aa-r~g~i~~V~lttrKpp~ 148 (255)
T COG1712 126 DA-LAAA-RVGGIEEVVLTTRKPPA 148 (255)
T ss_pred HH-HHHh-hcCCeeEEEEEeecChH
Confidence 32 2221 22589999888886544
No 52
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.51 E-value=0.00033 Score=71.49 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=30.9
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC---------CceEEEEcCC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDP 122 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~---------~~evvaInd~ 122 (425)
|++||+|.|+|.||+.+++.|.+++ +++|++|.|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 6789999999999999999998663 6899999874
No 53
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.46 E-value=0.00015 Score=76.10 Aligned_cols=94 Identities=27% Similarity=0.350 Sum_probs=58.7
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC---------CceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING 158 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~---------~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~G 158 (425)
+++||||+|+|.||+.++++|.+++ +++|++|.+. +.+.. .-+ .. .+
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~~-~~~-------------~~--------~~ 57 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEKD-RGV-------------DL--------PG 57 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhhc-cCC-------------CC--------cc
Confidence 3589999999999999999987653 5889999874 22210 000 00 00
Q ss_pred EEEEEEecCCCCCCCCcccCcCEEEEccCcc-cCHHHHHHHHhCCCCEEEEeCC
Q 014424 159 KLIKVFSKRDPAEIPWGDYGVDYVVESSGVF-TTIAKASAHMKGGAKKVVISAP 211 (425)
Q Consensus 159 k~I~v~~~~dp~~i~W~~~gvDiV~esTG~f-~s~e~a~~hl~aGakkVVISap 211 (425)
..++ .+++++ ..+.++|+|+||||.. ...+....+|++| |.||..++
T Consensus 58 --~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~G-khVVtaNK 105 (426)
T PRK06349 58 --ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAG-KHVVTANK 105 (426)
T ss_pred --ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCC-CeEEEcCH
Confidence 0011 122222 1234789999999754 3467888889888 45655554
No 54
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.45 E-value=0.00021 Score=70.50 Aligned_cols=95 Identities=20% Similarity=0.350 Sum_probs=61.0
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
|||+|+| +|++|+.+++.+.++++++++++-|. .++... .+| -+.+.+ .. . .| +.++ .+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~-~~~~~~----~~~--~~~~~~---~~-~-----~g--v~~~--~d 61 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER-HGSSLQ----GTD--AGELAG---IG-K-----VG--VPVT--DD 61 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCcccc----CCC--HHHhcC---cC-c-----CC--ceee--CC
Confidence 6999999 89999999999998899999999883 111110 000 000000 00 0 01 2222 13
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.+++ ...+|+|+|+|......+.+...++.|.. +|+
T Consensus 62 ~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 62 LEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred HHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 3333 13589999999888888889999998864 444
No 55
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.43 E-value=0.00052 Score=67.93 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCceeEEEEccChHHHHHHHHHHc-CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEe
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS 165 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~-~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~ 165 (425)
|.++||||+|+|+||+.+++.|.. .+++++++|.|+ +++....+.+ .+|. . . .
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~---~~g~---~-~---------------~-- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIW---GLRR---P-P---------------P-- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHH---hcCC---C-c---------------c--
Confidence 336899999999999999999987 378999999885 4443211111 0110 0 0 0
Q ss_pred cCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEE
Q 014424 166 KRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (425)
Q Consensus 166 ~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkV 206 (425)
..+.+++- .++|+|++|++...-.+.+...+++|...+
T Consensus 58 ~~~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 58 VVPLDQLA---THADIVVEAAPASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred cCCHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCCcEE
Confidence 01233332 258999999998888899999999886333
No 56
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.38 E-value=0.00034 Score=61.20 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=53.1
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
|||+|+|+ |++||.+++.+.++++++|+++-+...+. + .|+=.+.+- + .....+.++ .+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~-~----------~g~d~g~~~---~----~~~~~~~v~--~~ 60 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA-K----------VGKDVGELA---G----IGPLGVPVT--DD 60 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST-T----------TTSBCHHHC---T----SST-SSBEB--S-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc-c----------ccchhhhhh---C----cCCcccccc--hh
Confidence 59999996 99999999999999999999998752111 0 011000000 0 000011121 12
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCC
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGak 204 (425)
.+++- ..+|+++|.|-.....+.++..++.|..
T Consensus 61 l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 61 LEELL---EEADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred HHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 22221 2489999999666666677777777763
No 57
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.37 E-value=0.00068 Score=66.79 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=60.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
|||||+|+|+||+.+++.+.+.+ ++++++|.|+ +++....+.+ .| + ..++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~------~~--------~---------~~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS------KT--------G---------AKAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH------hc--------C---------CeeE--CC
Confidence 59999999999999999988764 7999999885 4443322221 00 0 0111 12
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.+++- .++|+|++|++...-.+.+...+++|...+++
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEE
Confidence 33332 26899999998877788888999988644443
No 58
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.31 E-value=0.0021 Score=63.07 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=57.0
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
|||+|+|+ |++|+.+++.+.++++++++++.|. +++... .+ . . . .+.++ .+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~--~~~~~~----------~~------~-~--~-----~i~~~--~d 53 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR--PGSPLV----------GQ------G-A--L-----GVAIT--DD 53 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec--CCcccc----------cc------C-C--C-----Ccccc--CC
Confidence 59999995 9999999999988888999999884 221110 00 0 0 0 01111 12
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEE
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkV 206 (425)
.+++- .++|+|+++|......+.+...+++|..-|
T Consensus 54 l~~ll---~~~DvVid~t~p~~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 54 LEAVL---ADADVLIDFTTPEATLENLEFALEHGKPLV 88 (257)
T ss_pred HHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCCEE
Confidence 32221 258999999976666888889999987433
No 59
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0014 Score=64.72 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=60.7
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
|+|||+|+| .||+||+++|++.+.|++++++.-+...+. ..|+-.+.+-. ++-..+.+..
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-----------~~g~d~ge~~g-------~~~~gv~v~~- 61 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-----------SLGSDAGELAG-------LGLLGVPVTD- 61 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-----------ccccchhhhcc-------ccccCceeec-
Confidence 347999999 699999999999999999999876631111 01111111100 1111122321
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEE
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVV 207 (425)
++. -...++|+++|-|-...+.+.++..++.|.+-||
T Consensus 62 -~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVI 98 (266)
T COG0289 62 -DLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVI 98 (266)
T ss_pred -chh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEE
Confidence 111 1234789999999888888888888888854443
No 60
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.05 E-value=0.0015 Score=55.32 Aligned_cols=94 Identities=32% Similarity=0.408 Sum_probs=65.6
Q ss_pred eeEEEEccChHHHHHHHHHHcC-CCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFR-DDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~-~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
+||||+|+|.+|+..++.+.+. +++++++|.|+ +++......+ .+| .. . +. +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~~---~~~---~~--~-------~~----------~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFAE---KYG---IP--V-------YT----------D 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHHH---HTT---SE--E-------ES----------S
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHHH---Hhc---cc--c-------hh----------H
Confidence 5999999999999999888877 78999999996 4543322211 011 01 1 11 1
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps 212 (425)
.+++ ..+.++|+|+-||....-.+.+...+++|. .|++--|.
T Consensus 54 ~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 54 LEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp HHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 1111 112379999999999988899999999988 77776553
No 61
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.97 E-value=0.0016 Score=66.58 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=56.8
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC---------CceEEEEcCCCCCh---H--HHhHhhhcccccCCccceEEEeCCCe
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDPFIDA---K--YMAYMFKYDSTHGVFKGTINVVDDST 153 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~---------~~evvaInd~~~~~---~--~~ayll~yDS~~g~f~~~v~~~~~~~ 153 (425)
|++||+|.|||.||+.++|+|.++. ++.|++|.|..... + .+..+++|-..+|... .
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~---------~ 71 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS---------N 71 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh---------h
Confidence 6789999999999999999987631 47899998741000 0 0001111111111000 0
Q ss_pred EEECCEEEEEEecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCC
Q 014424 154 LEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (425)
Q Consensus 154 l~i~Gk~I~v~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGa 203 (425)
+.-+ ... ...+++++ +.+..+|+|+|+|+.....+.....++.|.
T Consensus 72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~ 116 (336)
T PRK08374 72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK 116 (336)
T ss_pred cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC
Confidence 0000 000 00012121 223579999999987777777788888777
No 62
>PRK11579 putative oxidoreductase; Provisional
Probab=96.95 E-value=0.0039 Score=63.27 Aligned_cols=93 Identities=24% Similarity=0.386 Sum_probs=63.7
Q ss_pred ceeEEEEccChHHHH-HHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 89 NTKVGINGFGRIGRL-VLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 89 ~ikVaInGfGrIGr~-vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
++||||+|+|.||+. .++++...+++++++|.|+ +.+...- + |... .++ .
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~~--~-------~~~~----------------~~~--~ 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVKA--D-------WPTV----------------TVV--S 54 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHHh--h-------CCCC----------------cee--C
Confidence 479999999999985 5677777788999999995 4443210 1 1100 011 1
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps 212 (425)
+.+++ ..+.++|+|+-||....-.+.+..++++| |.|++--|-
T Consensus 55 ~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 55 EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 22222 11247899999999999999999999998 577776553
No 63
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.81 E-value=0.011 Score=62.59 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=64.4
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhhh-cccccCCccceEEEeCC---CeEE--ECCE--
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDD---STLE--INGK-- 159 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll~-yDS~~g~f~~~v~~~~~---~~l~--i~Gk-- 159 (425)
.||+|.| ||-||...++++.++| +|+++++.. ....+.++...+ |. .+| +-+.+. ..|. +.|.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaa-g~Ni~lL~~q~~~f~---p~~---v~v~d~~~~~~l~~~l~~~~~ 130 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAA-GSNVTLLADQVRKFK---PKL---VAVRNESLVDELKEALADLDD 130 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEEC-CCCHHHHHHHHHHhC---CCE---EEEcCHHHHHHHHHhhcCCCC
Confidence 5999999 8999999999998875 599999976 345655544332 21 111 111100 0000 0110
Q ss_pred EEEEEec-CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeC
Q 014424 160 LIKVFSK-RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (425)
Q Consensus 160 ~I~v~~~-~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISa 210 (425)
.+.++.. .+..++ -...++|+|+.+.+.+...+..-.++++| |+|.+.|
T Consensus 131 ~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 131 KPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 1223221 111111 01236899999997776666667888888 5666644
No 64
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.67 E-value=0.0024 Score=65.56 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=28.7
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC---------CceEEEEcC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~---------~~evvaInd 121 (425)
|+++|+|.|||.||+.++++|.++. ++.|++|.+
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~ 43 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG 43 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe
Confidence 5689999999999999999987542 477888876
No 65
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.62 E-value=0.007 Score=60.64 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=61.6
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
|.+||.||| .|++|+.+++++.+ ++|+||+..|+....+ +-.+.+.|..+.++..
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~-----------------------~~~~~~~g~~v~~~~~ 65 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGV-----------------------GVTVEVCGVEVRLVGP 65 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccc-----------------------cccceeccceeeeecC
Confidence 457999999 89999999999998 8899998766421110 0012233445555522
Q ss_pred CCCCCCC--CcccCcC-EEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 167 RDPAEIP--WGDYGVD-YVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 167 ~dp~~i~--W~~~gvD-iV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.|.+..- -....+| ++||-|-.....+.++..++.|..-|+=
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvG 110 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMG 110 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 2222110 0112578 8999887766777777888888755544
No 66
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.62 E-value=0.0048 Score=62.88 Aligned_cols=33 Identities=36% Similarity=0.666 Sum_probs=28.5
Q ss_pred eeEEEEccChHHHHHHHHHHcC-------CCceEEEEcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFR-------DDVDVVAVNDP 122 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~-------~~~evvaInd~ 122 (425)
|||+|.|||.||+.++++|.++ .+++||+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 3999999999999999999874 35889999874
No 67
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0088 Score=61.12 Aligned_cols=36 Identities=39% Similarity=0.583 Sum_probs=30.4
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCC---------CceEEEEcCC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVNDP 122 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~---------~~evvaInd~ 122 (425)
+|++||+|.|||.||+.++|+|.++. ++++++|.+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 46789999999999999999998752 5788888774
No 68
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.31 E-value=0.017 Score=60.16 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=65.5
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhhh-cccccCCccceEEEeCCC---eEE--ECCEEE
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK-YDSTHGVFKGTINVVDDS---TLE--INGKLI 161 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll~-yDS~~g~f~~~v~~~~~~---~l~--i~Gk~I 161 (425)
.||+|+| ||.||+.-++++..+| .|+|+++.. ..+.+.+..+.+ |. .+|. -..++. .|. +.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa-~~n~~~l~~q~~~f~---p~~v---~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSA-GKNVELLAEQAREFR---PKYV---VVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHHHhC---CCEE---EEcCHHHHHHHHHhhccCCc
Confidence 4899999 9999999999998775 699999974 135555544432 11 1111 111000 000 111112
Q ss_pred EEEecCC-CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeC
Q 014424 162 KVFSKRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (425)
Q Consensus 162 ~v~~~~d-p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISa 210 (425)
+++...+ ..++ -...++|+|+.+.+.+.-.+..-+++++| |+|.+.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaLAN 122 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIALAN 122 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEEeC
Confidence 2332211 1111 01236999999998888778888889988 4565633
No 69
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.29 E-value=0.0034 Score=53.75 Aligned_cols=78 Identities=27% Similarity=0.325 Sum_probs=46.7
Q ss_pred ccChHHHHHHHHHHcCC---CceEEEEcCCC--CChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 96 GFGRIGRLVLRVAAFRD---DVDVVAVNDPF--IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 96 GfGrIGr~vlr~l~~~~---~~evvaInd~~--~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
|||.||+.+++.|.++. ++++++|.+.. .+.+..... ++.... .+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~------------------~~~~~~----------~~~~ 52 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF------------------PDEAFT----------TDLE 52 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH------------------THSCEE----------SSHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc------------------cccccc----------CCHH
Confidence 89999999999999875 79999998852 001100000 000000 0111
Q ss_pred C-CCCcccCcCEEEEccCcccCHHHHHHHHhCCC
Q 014424 171 E-IPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (425)
Q Consensus 171 ~-i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGa 203 (425)
+ +.| .+.|+|+|||+.....+..+..|+.|.
T Consensus 53 ~~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~ 84 (117)
T PF03447_consen 53 ELIDD--PDIDVVVECTSSEAVAEYYEKALERGK 84 (117)
T ss_dssp HHHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC
T ss_pred HHhcC--cCCCEEEECCCchHHHHHHHHHHHCCC
Confidence 1 111 268999999988878888899999887
No 70
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.25 E-value=0.02 Score=54.99 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=49.8
Q ss_pred cCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCc-cccCC-CCcEEecCCchhhhHHhHHHHH
Q 014424 177 YGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNE-KTYKP-NMNIVSNASCTTNCLAPLAKVV 251 (425)
Q Consensus 177 ~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~-~~~~~-~~~IISnaSCTTn~Lap~lk~L 251 (425)
.++|+|||+|..+.....+.+..++|.+-+.++ |.+=-|-+||-+|. ++++. +-+.|.+.+-.|. |++...
T Consensus 70 ~di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paaigp~vvp~~n~~eh~~a~nvnmvtcggqati---piv~av 142 (310)
T COG4569 70 ADIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAAIGPYVVPVVNLEEHVDALNVNMVTCGGQATI---PIVAAV 142 (310)
T ss_pred CCcceEEeccccchhhcchHhHHhcCCceeecc-hhccCCeeccccchHHhcCCCCcceEeecCcccc---hhhhhh
Confidence 368999999999988888888889999777664 33346889999994 45553 4456665554444 544443
No 71
>PRK10206 putative oxidoreductase; Provisional
Probab=96.02 E-value=0.019 Score=58.58 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=61.1
Q ss_pred ceeEEEEccChHHHH-HHHHHHc-CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 89 NTKVGINGFGRIGRL-VLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInGfGrIGr~-vlr~l~~-~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
++||||+|+|.+++. .++.+.. .++++|++|.|+ +++.....-+|. . +. ++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~--~~~~~~~~~~~~-------~-~~---------------~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR--HAKPEEQAPIYS-------H-IH---------------FT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC--ChhHHHHHHhcC-------C-Cc---------------cc--
Confidence 379999999998854 4676644 367999999996 333211111111 0 00 11
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps 212 (425)
.+.+++ ..+.++|+|+-||....-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 011111 12347899999999999999999999998 678876553
No 72
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.96 E-value=0.1 Score=50.48 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=31.2
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
.+.+||+|.|||.||+.+++.|.+. ...||+|.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 4567999999999999999999887 5999999984
No 73
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.80 E-value=0.037 Score=55.13 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=64.5
Q ss_pred CCceeEEEEccChHHH-HHHHHHHcCCC-ceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEE
Q 014424 87 DGNTKVGINGFGRIGR-LVLRVAAFRDD-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr-~vlr~l~~~~~-~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~ 164 (425)
+|++||||+|+|.+++ ..++.+.+.++ +++++|.|+ +++....+.+ .||. . . .+
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a~---~~~~---~-~---------------~~ 56 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFAE---EFGI---A-K---------------AY 56 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHHH---HcCC---C-c---------------cc
Confidence 3568999999986664 58888888776 799999885 5554332221 1111 0 0 01
Q ss_pred ecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC
Q 014424 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (425)
Q Consensus 165 ~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps 212 (425)
. +.+++ -.+.++|+|+-||....-.+.+.++|++|. .|++--|-
T Consensus 57 ~--~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKPl 100 (342)
T COG0673 57 T--DLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKPL 100 (342)
T ss_pred C--CHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCCC
Confidence 0 11111 012358999999999999999999999886 67775553
No 74
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.66 E-value=0.057 Score=57.40 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=61.1
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCC--------CChHHHhHhhhccccc-CCccceEEEeCCCeEEECCE
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDSTH-GVFKGTINVVDDSTLEINGK 159 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~--------~~~~~~ayll~yDS~~-g~f~~~v~~~~~~~l~i~Gk 159 (425)
..||+|-|||.||+.+++.|.+. ...||+|.|.. .|++. |++|...+ |.... ..+. .+.+
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~---L~~~k~~~~~~l~~---~~~~----~~~~ 300 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEK---LKEIKEVRRGRISE---YAEE----FGAE 300 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHH---HHHHHHhcCCchhh---hhhh----cCCe
Confidence 46999999999999999999887 49999998821 13332 33333222 21111 0000 0001
Q ss_pred EEEEEecCCCCCCCCcccCcCEEEEcc-CcccCHHHHHHHHhCCCCE
Q 014424 160 LIKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKK 205 (425)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvDiV~esT-G~f~s~e~a~~hl~aGakk 205 (425)
. .+++++ |. ..+||.+.|+ +.-++.+-+..+.+.+||-
T Consensus 301 ---~---i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~aki 339 (445)
T PRK09414 301 ---Y---LEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVKA 339 (445)
T ss_pred ---e---cCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCeE
Confidence 1 123332 43 5799999999 6677888888887767743
No 75
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.42 E-value=0.15 Score=50.41 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=62.3
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCC--------CChHHHhHhhhcccccCC-ccceEEEeCCCeEEECCE
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDSTHGV-FKGTINVVDDSTLEINGK 159 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~--------~~~~~~ayll~yDS~~g~-f~~~v~~~~~~~l~i~Gk 159 (425)
-.||+|-|||.||+.+++.|.+. ...||+|.|.. .|.+.+..+++++..++. ..... ..+.+
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~-------~~~~~- 108 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYA-------KKYGT- 108 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHh-------hcCCC-
Confidence 35999999999999999999987 48999998821 244444444544432221 00000 00111
Q ss_pred EEEEEecCCCCCCCCcccCcCEEEEcc-CcccCHHHHHHHHhCCCC
Q 014424 160 LIKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAK 204 (425)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvDiV~esT-G~f~s~e~a~~hl~aGak 204 (425)
.+.. +++++ |. ..+||.+=|. +.-++.+-++...+.+||
T Consensus 109 -a~~~---~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak 148 (254)
T cd05313 109 -AKYF---EGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK 148 (254)
T ss_pred -CEEe---CCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE
Confidence 0111 33333 53 5799999887 777788888776666774
No 76
>PLN02700 homoserine dehydrogenase family protein
Probab=95.13 E-value=0.038 Score=57.52 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCC--------CceEEEEcC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVND 121 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~--------~~evvaInd 121 (425)
||+++|+|.|+|.||+.+++++.++. ++.|++|.+
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~ 43 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCD 43 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEEC
Confidence 45789999999999999999987542 367888877
No 77
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.86 E-value=0.042 Score=56.49 Aligned_cols=95 Identities=27% Similarity=0.383 Sum_probs=55.9
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEE--ECCEEEEEEec
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLE--INGKLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~--i~Gk~I~v~~~ 166 (425)
++|||++|.|-.|+-++-....-|.|++|+|.|...+....+ ||-.++.=...++..+-.+.. +.--+|.+..
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~- 91 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKIEAVEADDASKMADAIEAGKIAVTD- 91 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcccccccchhhHHHHHHhcCcEEEec-
Confidence 479999999999999888888778999999999765554443 454443321122221000000 1101233331
Q ss_pred CCCCCCCCcccCcCEEEEccCccc
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFT 190 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~ 190 (425)
|- ++-.....+|+++|+||.-.
T Consensus 92 -D~-~~i~~~~~IdvIIdATG~p~ 113 (438)
T COG4091 92 -DA-ELIIANDLIDVIIDATGVPE 113 (438)
T ss_pred -ch-hhhhcCCcceEEEEcCCCcc
Confidence 12 22233347999999998753
No 78
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.81 E-value=0.093 Score=52.44 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=55.4
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEE-cCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec-
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV-NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK- 166 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaI-nd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~- 166 (425)
+||.||| +|++||.+++++.+ ++|+||+. -++ .. .+ .+...+.|..|++...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~----~~--------------~~------~~~~~~~g~~v~v~~~~ 55 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGG----EE--------------EA------ENEAEVAGKEILLHGPS 55 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccc----cc--------------cc------cchhhhcccceeeeccc
Confidence 4899999 89999999999888 78999975 221 00 00 0111123334444211
Q ss_pred ---CCCCCCCCcccCcC-EEEEccCcccCHHHHHHHHhCCCCEEE
Q 014424 167 ---RDPAEIPWGDYGVD-YVVESSGVFTTIAKASAHMKGGAKKVV 207 (425)
Q Consensus 167 ---~dp~~i~W~~~gvD-iV~esTG~f~s~e~a~~hl~aGakkVV 207 (425)
.+.+.+. +...| +++|-|-.....+.+...++.|..-|+
T Consensus 56 ~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~Vi 98 (275)
T TIGR02130 56 EREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVM 98 (275)
T ss_pred cccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence 1222221 12378 999988766667777788888874443
No 79
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.63 E-value=0.52 Score=45.40 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=30.7
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
.+.+||+|-|||.||+.+++.|.+. ...+|+|.|.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~ 55 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDP 55 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 3456999999999999999999987 4889999995
No 80
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.49 E-value=0.069 Score=50.47 Aligned_cols=95 Identities=22% Similarity=0.191 Sum_probs=56.9
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 92 VaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
|+|.| +|.+|+.+++.|... .++|.++... .....+.-|+.. |. ..+.+ .-.+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~--~~~~~~~~l~~~---g~--~vv~~----------------d~~~~~ 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRD--PSSDRAQQLQAL---GA--EVVEA----------------DYDDPE 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESS--SHHHHHHHHHHT---TT--EEEES-----------------TT-HH
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEec--cchhhhhhhhcc---cc--eEeec----------------ccCCHH
Confidence 78999 999999999999984 6999987663 222232333311 10 01111 011233
Q ss_pred CCCCcccCcCEEEEccCccc------CHHHHHHHHhCCCCEEEEeC
Q 014424 171 EIPWGDYGVDYVVESSGVFT------TIAKASAHMKGGAKKVVISA 210 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~------s~e~a~~hl~aGakkVVISa 210 (425)
.+.=.-.|+|.||.+++... ....+.++.++|.|++|.|.
T Consensus 57 ~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 57 SLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 32211248999999998552 23445677788999998754
No 81
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.69 E-value=0.38 Score=51.30 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=66.3
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCC--------CChHHHhHhhhccccc-CCccceEEEeCCCeEEECCE
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDSTH-GVFKGTINVVDDSTLEINGK 159 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~--------~~~~~~ayll~yDS~~-g~f~~~v~~~~~~~l~i~Gk 159 (425)
-.+|+|-|||.||+..++.|.+. ...||+|.|.. .|.+.+.++++|...+ |+...-.+. ..|
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~-------~~~- 307 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKH-------SST- 307 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhc-------cCC-
Confidence 45999999999999999999887 48999999853 2355555555544322 221110000 001
Q ss_pred EEEEEecCCCCCCCCcccCcCEEEEcc-CcccCHHHHHHHHhCCCCEE
Q 014424 160 LIKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKKV 206 (425)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvDiV~esT-G~f~s~e~a~~hl~aGakkV 206 (425)
.+.. ++++ .|. ..+||.+=|. +.-++.+.|+..++.|||-|
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V 349 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKLV 349 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeEE
Confidence 0111 1222 365 6899999887 77788888888778888644
No 82
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.61 E-value=0.19 Score=47.82 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=59.6
Q ss_pred eeEEEEccChHHHHHHHHHH-cCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGFGRIGRLVLRVAA-FRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~-~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
.||+|+|+|.+|+.+++.+. ...+++++++-|. +++.. |+ . ++|.+ +....+
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------~~-----------~--i~g~~--v~~~~~ 137 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------GT-----------K--IGGIP--VYHIDE 137 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------CC-----------E--eCCeE--EcCHHH
Confidence 58999999999999998643 3346999998773 23211 11 0 12222 111111
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps 212 (425)
..++ ..+.++|+|+.|+......+.+...+++|.+.++.-.|-
T Consensus 138 l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 138 LEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 2221 123479999999988776676777888898777665553
No 83
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.58 E-value=0.11 Score=46.76 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=26.5
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 92 VaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|.|.| +|.+|+.+++.|.+++ .+|.++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec
Confidence 68999 9999999999999986 89998876
No 84
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.46 E-value=0.8 Score=48.31 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=26.5
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+..|-|.| +|++||++.+.|.++. |.+.+.-
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg-f~vra~V 110 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG-FSVRALV 110 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC-Ceeeeec
Confidence 45899999 9999999999999996 7766654
No 85
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.41 E-value=0.19 Score=47.70 Aligned_cols=95 Identities=23% Similarity=0.305 Sum_probs=65.5
Q ss_pred eeEEEEccChHHHHHHHHHHc-CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~-~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
++|.|+|.|.+||.++.--+. +.+|.++++=|. +++.+ |+..+.+ +|..-.+
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~V----------G~~~~~v---------------~V~~~d~ 137 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDKV----------GTKIGDV---------------PVYDLDD 137 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHHh----------CcccCCe---------------eeechHH
Confidence 699999999999988765543 447999999883 55432 3332222 2221112
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps 212 (425)
.+.+ -.+.++|+++-|...-...+-|....++|.|-+.--+|-
T Consensus 138 le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 138 LEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 2211 123489999999999888899999999999988776664
No 86
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.39 E-value=0.27 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.3
Q ss_pred CceeEEEEccChHHHHHHHHHHcC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~ 111 (425)
||+||+|+|+|.+|..+++.|.+.
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhC
Confidence 457999999999999999988765
No 87
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.37 E-value=0.13 Score=58.70 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.5
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC--------CceEEEEcC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~--------~~evvaInd 121 (425)
+.++|+|.|||.||+.++++|.++. ++.|++|.+
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~ 505 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN 505 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 5679999999999999999997642 477888865
No 88
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.18 E-value=0.42 Score=47.58 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.7
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 899999 9999999999999885 78888765
No 89
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=93.14 E-value=0.067 Score=60.84 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=29.1
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCC---------CceEEEEcC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRD---------DVDVVAVND 121 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~---------~~evvaInd 121 (425)
++.++|+|.|||.||+.++|+|.++. ++.|++|.+
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 45689999999999999999987642 477888866
No 90
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.05 E-value=0.12 Score=47.63 Aligned_cols=31 Identities=39% Similarity=0.597 Sum_probs=26.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|||+|||+||+.+.+.+..- .++|.+.+.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~ 67 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF-GMRVIGYDR 67 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT-T-EEEEEES
T ss_pred CEEEEEEEcCCcCeEeeeeecC-CceeEEecc
Confidence 4899999999999999999987 489887775
No 91
>PLN02477 glutamate dehydrogenase
Probab=92.70 E-value=1.2 Score=47.14 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=29.7
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
-.||+|-|||.||+.+++.|.+. ...||+|.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECC
Confidence 35999999999999999999887 4899999885
No 92
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.69 E-value=0.48 Score=42.36 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=45.1
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
+||+|+|. |.||..++-.|..++-. ||+-+.. +.+ .+.-...|=.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~---~~~-~~~g~a~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI---NED-KAEGEALDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES---SHH-HHHHHHHHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc---Ccc-cceeeehhhhhhhhhc-------------cccccccc-c
Confidence 49999997 99999999888877533 4553432 221 2222223332322111 11222332 3
Q ss_pred CCCCCCCcccCcCEEEEccCccc
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFT 190 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~ 190 (425)
+.+.+ .++|+|+-+.|...
T Consensus 63 ~~~~~----~~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEAL----KDADIVVITAGVPR 81 (141)
T ss_dssp SGGGG----TTESEEEETTSTSS
T ss_pred ccccc----ccccEEEEeccccc
Confidence 45555 48999999998753
No 93
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.39 E-value=1 Score=48.06 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=66.2
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCC--------CCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEE
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP--------FIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL 160 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~--------~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~ 160 (425)
-.||+|-|||.||+..++.|.+. ...||+|.|. ..+.+.+.+|++|...+|...... . . .+.|-
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~-~---~--~~~ga- 299 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPY-A---E--KFPGS- 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHH-H---h--cCCCC-
Confidence 45999999999999999999887 4899997553 234555666777654443211000 0 0 01121
Q ss_pred EEEEecCCCCCCCCcccCcCEEEEcc-CcccCHHHHHHHHhCCCCEE
Q 014424 161 IKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKKV 206 (425)
Q Consensus 161 I~v~~~~dp~~i~W~~~gvDiV~esT-G~f~s~e~a~~hl~aGakkV 206 (425)
+.. +++++ |. ..+||.+=|. +.-++.+.++...+.+||-|
T Consensus 300 -~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V 340 (445)
T PRK14030 300 -TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVLCV 340 (445)
T ss_pred -EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCeEE
Confidence 111 23332 54 6899999887 77788888888777788543
No 94
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.31 E-value=0.41 Score=55.85 Aligned_cols=94 Identities=19% Similarity=0.118 Sum_probs=61.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCce------------EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEEC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVD------------VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN 157 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~e------------vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~ 157 (425)
.||+|+|.|+||+..++.|.++++++ +|+|.|+ +++....+.+ .+.+ ++ .+.+
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~-~~-----~v~l- 634 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIEN-AE-----AVQL- 634 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHH------hcCC-Cc-----eEEe-
Confidence 49999999999999999998887766 7889885 4444333321 0110 00 0111
Q ss_pred CEEEEEEecCCCCCCC-CcccCcCEEEEccCcccCHHHHHHHHhCCCCEE
Q 014424 158 GKLIKVFSKRDPAEIP-WGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (425)
Q Consensus 158 Gk~I~v~~~~dp~~i~-W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkV 206 (425)
.+ .|++++. +- .++|+|+-|++.....+-+..++++|.--+
T Consensus 635 ----Dv---~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkHvv 676 (1042)
T PLN02819 635 ----DV---SDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKHLV 676 (1042)
T ss_pred ----ec---CCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCCEE
Confidence 01 1222221 10 369999999999999999999999987433
No 95
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.28 E-value=0.94 Score=45.55 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.6
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|++||+|+|.|.+|..+...|.+.+ .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC-CcEEEEec
Confidence 5579999999999999999998774 56665543
No 96
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.07 E-value=0.16 Score=52.14 Aligned_cols=96 Identities=22% Similarity=0.271 Sum_probs=55.0
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCCC
Q 014424 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAE 171 (425)
Q Consensus 92 VaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~~ 171 (425)
|.|+|.|.+|+.+++.|.+++.++-+.|.+. +.+.+..+.+.- . ...++. . .....|++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~~--~---~~~~~~-----~--------~~d~~~~~~ 60 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEKL--L---GDRVEA-----V--------QVDVNDPES 60 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT----T---TTTEEE-----E--------E--TTTHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhhc--c---ccceeE-----E--------EEecCCHHH
Confidence 6899999999999999999977723345553 566554444310 0 001111 0 011122222
Q ss_pred CCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEE
Q 014424 172 IPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVV 207 (425)
Q Consensus 172 i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVV 207 (425)
+.=--.+.|+|+.|+|.+....-+++.++.|+.-|.
T Consensus 61 l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 61 LAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEE
T ss_pred HHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeec
Confidence 211124789999999999888889999999994443
No 97
>PLN00016 RNA-binding protein; Provisional
Probab=92.01 E-value=0.39 Score=49.17 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=28.5
Q ss_pred CCceeEEEE----c-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 87 DGNTKVGIN----G-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 87 ~m~ikVaIn----G-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.|+.||.|. | +|.||+.+++.|.+++ .+|.++..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 345699999 8 9999999999999875 68877765
No 98
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.99 E-value=0.2 Score=51.11 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=27.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
-.+|||+|||+||+.+.+.|..- .|+|.+.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af-gm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF-GMKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEEEECC
Confidence 35899999999999999999877 488876643
No 99
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.98 E-value=0.45 Score=45.48 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=25.4
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC--Cce-EEEEcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD--DVD-VVAVND 121 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~--~~e-vvaInd 121 (425)
.+||+|+|.|.+|+.+++.+..++ +++ ++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 469999999999999999887653 344 555554
No 100
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.92 E-value=0.31 Score=47.94 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=56.3
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC----------CceEEEEcCCCCChHHHh-HhhhcccccCCccceEEEeCCCeEEEC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD----------DVDVVAVNDPFIDAKYMA-YMFKYDSTHGVFKGTINVVDDSTLEIN 157 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~----------~~evvaInd~~~~~~~~a-yll~yDS~~g~f~~~v~~~~~~~l~i~ 157 (425)
..||.|+|.|-+|..+++.|..-+ .++|+-+..-..+...+- .+| +++.-|+++..+-++ .--.++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf-~~~dVG~~Ka~v~~~--ri~~~~ 87 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAF-YPADVGQNKAIVLVN--RLNQAM 87 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccC-ChhHCCcHHHHHHHH--HHHhcc
Confidence 469999999999999999987531 234443422112222222 233 344457766543221 001122
Q ss_pred CEEEEEEecC-CCCCCCCcccCcCEEEEccCcccCHHHHHHHH
Q 014424 158 GKLIKVFSKR-DPAEIPWGDYGVDYVVESSGVFTTIAKASAHM 199 (425)
Q Consensus 158 Gk~I~v~~~~-dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl 199 (425)
+-.+....+. +++.+ + .+.|+|++|+....++...-..+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 3333333221 22222 2 37899999999888775554333
No 101
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.82 E-value=0.42 Score=46.10 Aligned_cols=99 Identities=25% Similarity=0.273 Sum_probs=58.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhh--cccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK--YDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~--yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
|++.|+|.|++|+.++|.|.+.+ .+++.|.+ +.+....-++ +|. . .+..++....+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~---------~-----~v~gd~t~~~~L~-- 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT---------H-----VVIGDATDEDVLE-- 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce---------E-----EEEecCCCHHHHH--
Confidence 48999999999999999999884 67777765 4444322221 110 0 1111221111211
Q ss_pred CCCCCCCcccCcCEEEEccCccc-CHHHHHHHHh-CCCCEEEEeCCCC
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFT-TIAKASAHMK-GGAKKVVISAPSA 213 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~-s~e~a~~hl~-aGakkVVISaps~ 213 (425)
+. +-.++|+++-+||... ..-.+..+++ -|.++++.-+.++
T Consensus 61 ---~a--gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 61 ---EA--GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred ---hc--CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 11 1246899999998854 3333444444 5888888766543
No 102
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.68 E-value=0.86 Score=47.28 Aligned_cols=32 Identities=38% Similarity=0.504 Sum_probs=27.1
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 35899999 9999999999999874 78877754
No 103
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.50 E-value=0.58 Score=46.18 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=25.4
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||+|+|.|.+|..+.+.|.+++ .+|.+++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEEC
Confidence 8999999999999999998774 67776653
No 104
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.36 E-value=1.1 Score=42.73 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=27.6
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|||||+| +|.+|.++++-+..|. -|++||..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEe
Confidence 4999999 9999999999998885 78999865
No 105
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.36 E-value=1.1 Score=47.77 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=60.4
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCC--------CChHHHhHhhhcccc-cCCccceEEEeCCCeEEECCE
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFKYDST-HGVFKGTINVVDDSTLEINGK 159 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~--------~~~~~~ayll~yDS~-~g~f~~~v~~~~~~~l~i~Gk 159 (425)
-.||+|-|||.||...++.|.+. ...||+|.|.. .+.+.+.|+.+|... +++... .. + . . |
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~---~~-~-~--~-g- 297 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIRE---YA-E-K--Y-G- 297 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhh---hH-h-h--c-C-
Confidence 35999999999999999999987 48999998821 245445444443321 111110 00 0 0 0 1
Q ss_pred EEEEEecCCCCCCCCcccCcCEEEEcc-CcccCHHHHHHHHhCCC
Q 014424 160 LIKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGA 203 (425)
Q Consensus 160 ~I~v~~~~dp~~i~W~~~gvDiV~esT-G~f~s~e~a~~hl~aGa 203 (425)
.... ++++ .|. ..+|+.+=|. +.-++.+.++.....|+
T Consensus 298 -a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~ 336 (444)
T PRK14031 298 -CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGV 336 (444)
T ss_pred -CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCC
Confidence 1111 2222 354 5799999887 66778888877665566
No 106
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.30 E-value=1.6 Score=43.45 Aligned_cols=147 Identities=17% Similarity=0.214 Sum_probs=75.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhc-----c--cccCCccceEEEeCCCeEEECCEEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKY-----D--STHGVFKGTINVVDDSTLEINGKLIKV 163 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~y-----D--S~~g~f~~~v~~~~~~~l~i~Gk~I~v 163 (425)
||||+|.|.+|+.+...+... .++|+..+- +++.+....++ | -..|..... .. +.. .. .+++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~--~~~--~~--~l~~ 75 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFET---TEELATAGRNRIEKSLERAVSRGKLTER-ER--DAA--LA--RLRF 75 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEEC---CHHHHHHHHHHHHHHHHHHHhcccCChh-hH--HHH--Hh--CeEe
Confidence 899999999999999988877 478665543 45444331110 0 001111100 00 000 00 1222
Q ss_pred EecCCCCCCCCcccCcCEEEEccCcccCHHH-----HHHHH-hCCCCEEEEeCCCC----------CCCcEE---eecCc
Q 014424 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAK-----ASAHM-KGGAKKVVISAPSA----------DAPMFV---VGVNE 224 (425)
Q Consensus 164 ~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~-----a~~hl-~aGakkVVISaps~----------Dvp~vV---~gVN~ 224 (425)
. .+.+.+ .++|+||||...-...+. ...+. ..+ .++.|+.|. ..|--+ .=+|+
T Consensus 76 ~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~--~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P 147 (286)
T PRK07819 76 T--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPD--AVLASNTSSIPIMKLAAATKRPGRVLGLHFFNP 147 (286)
T ss_pred e--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCC--cEEEECCCCCCHHHHHhhcCCCccEEEEecCCC
Confidence 2 233333 489999999754433221 12222 333 488888761 123222 22333
Q ss_pred cccCCCCcEEecCCchhhhHHhHHHHHHhhcC
Q 014424 225 KTYKPNMNIVSNASCTTNCLAPLAKVVHEEFG 256 (425)
Q Consensus 225 ~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fG 256 (425)
-.+.+--.||..+.+....+..+...+.+..|
T Consensus 148 ~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 148 VPVLPLVELVPTLVTSEATVARAEEFASDVLG 179 (286)
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 33333345777777777777766666555455
No 107
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.96 E-value=0.82 Score=46.77 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=54.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECC-EEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~G-k~I~v~~~~dp 169 (425)
+|.|.|.|.||...+.++.-.+--+|+++ |. +++.+....++. +....++. +..... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~--------------g~~~~~~~~~~~~~~---~~ 230 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAG--------------GADVVVNPSEDDAGA---EI 230 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhC--------------CCeEeecCccccHHH---HH
Confidence 79999999999988777766654566655 53 455543333322 11111211 100000 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEe
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVIS 209 (425)
.++.. ..|+|+||||+|.....+.+-..++.|-.-+++.
T Consensus 231 ~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 231 LELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred HHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 01111 1479999999996655566666666555444443
No 108
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=90.87 E-value=0.47 Score=46.14 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.3
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.| +|.||+.+++.|.+++ .+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeC
Confidence 578999 9999999999999874 78777754
No 109
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.49 E-value=1.1 Score=47.00 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=63.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+||-|+|.|.||+.+++.|..+.+.+|. |.|. +.+....... ++.+ .+++ +.++ +. |.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdR--s~~~~~~i~~--~~~~----~v~~-----~~vD-----~~---d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADR--SKEKCARIAE--LIGG----KVEA-----LQVD-----AA---DV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEeC--CHHHHHHHHh--hccc----ccee-----EEec-----cc---Ch
Confidence 5999999999999999999888767765 5553 4555444432 2112 1111 2121 11 11
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISa 210 (425)
+.+.=--.+.|+||.|.+.+....-.++.++.|..-+.+|.
T Consensus 60 ~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 60 DALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred HHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEccc
Confidence 11000002459999999999999999999999997666654
No 110
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.23 E-value=1.4 Score=48.36 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=34.7
Q ss_pred ccCcccccccCCccccCCCCCCceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 67 IQPIRATATEIPPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
..+.+++...........+..+.-.|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~R 112 (576)
T PLN03209 58 SGATKFSSAAIEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVR 112 (576)
T ss_pred ccchhhhhhhhhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 344444433333333333333334789999 8999999999998874 78776644
No 111
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=90.15 E-value=0.99 Score=46.49 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=30.9
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC-CceEEEEcCCCCChHH
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKY 128 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~ 128 (425)
++||||+|+ .+|+..++++.+.+ ++++++|.|. +.+.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~er 40 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSER 40 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHH
Confidence 369999999 67999999998877 7999999995 4543
No 112
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=90.01 E-value=0.66 Score=41.38 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=34.1
Q ss_pred EEEEc-cChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhhh
Q 014424 92 VGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFK 134 (425)
Q Consensus 92 VaInG-fGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll~ 134 (425)
|+|.| ||-||++.++.+.++| +|+|+++.. ..+.+.+....+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa-~~n~~~L~~q~~ 44 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA-GSNIEKLAEQAR 44 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSTHHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc-CCCHHHHHHHHH
Confidence 68999 9999999999999886 699999977 356666655543
No 113
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.85 E-value=1.2 Score=45.45 Aligned_cols=247 Identities=19% Similarity=0.177 Sum_probs=121.6
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
++|-|.| .|+||...++.|++. ..++|.+.++...-... +.. . .++ +...+ +. |
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~~g~~~~--v~~-~--~~~------------f~~gD----i~---D 55 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIA--LLK-L--QFK------------FYEGD----LL---D 55 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCCHHH--hhh-c--cCc------------eEEec----cc---c
Confidence 3889999 999999999999997 48888787754332211 110 0 011 11110 00 0
Q ss_pred CCCCC--CcccCcCEEEEccCccc------------------CHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccccC
Q 014424 169 PAEIP--WGDYGVDYVVESSGVFT------------------TIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 228 (425)
Q Consensus 169 p~~i~--W~~~gvDiV~esTG~f~------------------s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~~~ 228 (425)
-+.++ +.+..+|-||..+|.-. +....++..+.|.|++|+|...+ |||......-
T Consensus 56 ~~~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAa-----vYG~p~~~PI 130 (329)
T COG1087 56 RALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAA-----VYGEPTTSPI 130 (329)
T ss_pred HHHHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchh-----hcCCCCCccc
Confidence 00000 22234555555543221 44566777789999999976543 3444332111
Q ss_pred CCCcE--EecCC-chhhhHHhHHHHHHhhcCeeEEEEEeeeecccccccccCCCCCcccCcccCcceeecCCCChhHHHH
Q 014424 229 PNMNI--VSNAS-CTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVG 305 (425)
Q Consensus 229 ~~~~I--ISnaS-CTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~q~~vDg~~~kd~r~gr~aa~NIIP~~tGaakav~ 305 (425)
.+... -.||= -|--..=-+|+-++..+|++-+.+-=+ -....-.+|.-| .|..+ ..|+||...-+ +++
T Consensus 131 ~E~~~~~p~NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYF---N~aGA~~~G~iG-e~~~~---~thLip~~~q~--A~G 201 (329)
T COG1087 131 SETSPLAPINPYGRSKLMSEEILRDAAKANPFKVVILRYF---NVAGACPDGTLG-QRYPG---ATLLIPVAAEA--ALG 201 (329)
T ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCcEEEEEec---ccccCCCCCccC-CCCCC---cchHHHHHHHH--Hhc
Confidence 11111 11121 112223456777778888665433222 222112223222 22222 36788875322 222
Q ss_pred hhcCCCC------CceeEEEEE--eeec---------------cceeeeEEEEecCCCCHHHHHHHHHHhhcCCCCcccc
Q 014424 306 KVLPDLN------GKLTGMAFR--VPTP---------------NVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILG 362 (425)
Q Consensus 306 kVLPeL~------gkit~~avR--VPv~---------------~gs~~dltv~lek~~s~eeI~~alk~a~~~~lkgil~ 362 (425)
| .|.|. .--.|+|+| +=|. .|....+++=..+-.+.-|+.+++++....++. ..
T Consensus 202 ~-r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip--~~ 278 (329)
T COG1087 202 K-RDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIP--VE 278 (329)
T ss_pred C-CceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCc--ee
Confidence 2 11111 123567777 1111 233344555556777888999999988754432 12
Q ss_pred ccCCceEeecCCCCCcceEeeC
Q 014424 363 YTDEDVVSNDFVGDSRSSIFDA 384 (425)
Q Consensus 363 yte~~~VS~Df~~~~~s~i~d~ 384 (425)
+.+.- -||+-.++-|+
T Consensus 279 ~~~RR------~GDpa~l~Ad~ 294 (329)
T COG1087 279 IAPRR------AGDPAILVADS 294 (329)
T ss_pred eCCCC------CCCCceeEeCH
Confidence 22222 46666665443
No 114
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.82 E-value=1.4 Score=45.68 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=24.4
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||+|+| +|.+|+.+.+.|...+ .+|..++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d 129 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE 129 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC
Confidence 5999999 9999999999998774 5654443
No 115
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.73 E-value=0.4 Score=48.51 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=26.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-.+|||+|||+|||.+.+.+..- .++|.+.+
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d 175 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF-GAKVVYYS 175 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc-CCEEEEEC
Confidence 45899999999999999999766 47877664
No 116
>PRK08507 prephenate dehydrogenase; Validated
Probab=89.71 E-value=1.4 Score=43.34 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCC-ceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDD-VDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~-~evvaIn 120 (425)
||+|+|+|.+|+.+.+.|.+.+. .+|.+++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 89999999999999999987642 3565553
No 117
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.50 E-value=1.6 Score=43.59 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=23.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
+||+|+|.|.+|..++..+..++-.+|+-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 599999999999999988877642266544
No 118
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.41 E-value=0.44 Score=48.32 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.6
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
-.+|||+|+|+|||.+.|.+... .++|.+.+.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f-gm~V~~~~~ 179 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF-GMRVLIGQL 179 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-CCEEEEECC
Confidence 35899999999999999999876 488776653
No 119
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.28 E-value=0.83 Score=44.45 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=72.8
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHh-HhhhcccccCCccceEEEeCCCeEEECC-EEEEEEec
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA-YMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~a-yll~yDS~~g~f~~~v~~~~~~~l~i~G-k~I~v~~~ 166 (425)
..||.|+|.|-+|..+++.|...+-=++.-|..-..++..+- +++...+.-|+.+.++-.+ .-..+|- -.+....+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~--~l~~inP~~~V~~~~~ 88 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAE--RIRDINPECEVDAVEE 88 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHH--HHHHHCCCcEEEEeee
Confidence 458999999999999999998664113332322112222222 2222234456654432110 0000111 11111111
Q ss_pred -CCCCCCC-CcccCcCEEEEccCcccCHHHHHH-HHhCCCCEEEEeCCCCCCCcEEeecCccccCCCCcEEecCCchhhh
Q 014424 167 -RDPAEIP-WGDYGVDYVVESSGVFTTIAKASA-HMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNC 243 (425)
Q Consensus 167 -~dp~~i~-W~~~gvDiV~esTG~f~s~e~a~~-hl~aGakkVVISaps~Dvp~vV~gVN~~~~~~~~~IISnaSCTTn~ 243 (425)
-++++++ +-..+.|+||+|......+...-. ..+.+. |+|.-+-...++|+..--|+.-+.|.+|
T Consensus 89 ~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~i------------p~I~s~g~g~~~dp~~i~i~di~~t~~~ 156 (231)
T cd00755 89 FLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKI------------PVISSMGAGGKLDPTRIRVADISKTSGD 156 (231)
T ss_pred ecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCC------------CEEEEeCCcCCCCCCeEEEccEeccccC
Confidence 0111111 112368999999987655432222 222332 3333233344555443345555666666
Q ss_pred -HHhHHHHHHhhcCeeE
Q 014424 244 -LAPLAKVVHEEFGILE 259 (425)
Q Consensus 244 -Lap~lk~L~d~fGI~~ 259 (425)
|+..+.--.++-||..
T Consensus 157 pla~~~R~~Lrk~~~~~ 173 (231)
T cd00755 157 PLARKVRKRLRKRGIFF 173 (231)
T ss_pred cHHHHHHHHHHHcCCCC
Confidence 4444443334456653
No 120
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.20 E-value=1.5 Score=43.71 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=24.4
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCC-ceEEEE
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDD-VDVVAV 119 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~-~evvaI 119 (425)
|..||+|+|+|.+|+.+.+.|...+. .+|..+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~ 37 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGA 37 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEE
Confidence 33599999999999999999887642 255544
No 121
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.77 E-value=1.5 Score=44.45 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=22.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVV 117 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evv 117 (425)
.||+|+|.|.||..+...+..++-.+|+
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~ 33 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVV 33 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEE
Confidence 4999999999999998887766423533
No 122
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.56 E-value=0.55 Score=47.58 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=25.7
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-.+|||+|+|+|||.+.+.+... .++|.+.+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-GMKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 35899999999999999998766 47876654
No 123
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.49 E-value=0.33 Score=43.07 Aligned_cols=33 Identities=36% Similarity=0.501 Sum_probs=27.7
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
++||+|+|.|++|..+.++|.+.. ++|++|-..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeC
Confidence 359999999999999999998874 899888663
No 124
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.31 E-value=1.3 Score=44.53 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=24.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaIn 120 (425)
||+|+|.|.+|+.++..|..++-. +|+-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999999999999999887533 555444
No 125
>PLN02602 lactate dehydrogenase
Probab=88.30 E-value=2 Score=44.39 Aligned_cols=147 Identities=15% Similarity=0.155 Sum_probs=72.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
.||+|+|.|.||..++-.|..++-+ |++-| |...+ .+.-...|-.|.. .+.+. ..+....+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~Li-Di~~~---~~~g~a~DL~~~~-------------~~~~~-~~i~~~~d 99 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALV-DVNPD---KLRGEMLDLQHAA-------------AFLPR-TKILASTD 99 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE-eCCCc---hhhHHHHHHHhhh-------------hcCCC-CEEEeCCC
Confidence 4999999999999999888776533 34433 32111 1111122322211 11111 12322223
Q ss_pred CCCCCCcccCcCEEEEccCccc----CH------------HHHHHHHhCC--CCEEEEeCCCCCCCcEEeecCccccCCC
Q 014424 169 PAEIPWGDYGVDYVVESSGVFT----TI------------AKASAHMKGG--AKKVVISAPSADAPMFVVGVNEKTYKPN 230 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~----s~------------e~a~~hl~aG--akkVVISaps~Dvp~vV~gVN~~~~~~~ 230 (425)
.+++ .++|+|+-+.|.-. ++ +.++...+.+ +..+++|||..=.-.++... ..+. .
T Consensus 100 y~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k~--sg~p-~ 172 (350)
T PLN02602 100 YAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKL--SGFP-A 172 (350)
T ss_pred HHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH--hCCC-H
Confidence 3333 48999999988743 33 2233333332 34455677642100011100 0111 2
Q ss_pred CcEEecCCchhhhHHhHHHHHHhhcCeeEEEEE
Q 014424 231 MNIVSNASCTTNCLAPLAKVVHEEFGILEGLMT 263 (425)
Q Consensus 231 ~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~T 263 (425)
.++|.- ||.-=-+.+-..|.+.+|+..-.+.
T Consensus 173 ~rviG~--gt~LDs~R~r~~lA~~l~v~~~~V~ 203 (350)
T PLN02602 173 NRVIGS--GTNLDSSRFRFLIADHLDVNAQDVQ 203 (350)
T ss_pred HHEEee--cchHHHHHHHHHHHHHhCCCcccee
Confidence 345543 4444455677778888887655433
No 126
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.27 E-value=7.1 Score=39.24 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=53.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|.|.|.||...++++.... ..++++.....+.+.+. +++ + +|- + . ++-+.-.+. + .
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~-~~~-~--~Ga---~--------~-v~~~~~~~~---~-~ 233 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKAD-IVE-E--LGA---T--------Y-VNSSKTPVA---E-V 233 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHH-HHH-H--cCC---E--------E-ecCCccchh---h-h
Confidence 7999999999999998887764 57777653111233332 222 1 111 1 0 110000000 0 0
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCC
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISap 211 (425)
. .+ .++|+||||+|.....+.+-..++.|.+-+++..+
T Consensus 234 ~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 234 K-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred h-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 0 11 37999999999755555566667666544444443
No 127
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.26 E-value=2.4 Score=43.33 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.0
Q ss_pred eeEEEEccChHHHHHHHHHHcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+||+|+|.|.||..++-+|..+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 39999999999999998886664
No 128
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.25 E-value=1.5 Score=43.50 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=24.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+||+|+|.|.+|..+.+.|.+.. .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 49999999999999999998764 5655444
No 129
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.53 E-value=1.4 Score=35.77 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=30.3
Q ss_pred eEEEEccChHHHHHHHHHHcCC--CceEEEEcCCCCChHHHhHhh
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD--DVDVVAVNDPFIDAKYMAYMF 133 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~--~~evvaInd~~~~~~~~ayll 133 (425)
||||+|+|.+|..+++.|.+++ .-+|.-+.+. +++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH
Confidence 7999999999999999998874 2455545443 566665554
No 130
>PLN02688 pyrroline-5-carboxylate reductase
Probab=87.44 E-value=2.5 Score=40.98 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=24.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCC---ceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~---~evvaInd 121 (425)
|||+++|+|.+|..+++.|.+.+. .+|+..++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~ 35 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADD 35 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeC
Confidence 389999999999999999987642 26665535
No 131
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=87.44 E-value=0.72 Score=46.48 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=31.1
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|.++|-|.|||.||+..+|.+..+|.+|+|+.-+
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv 34 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWV 34 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEe
Confidence 6679999999999999999999999999998765
No 132
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.44 E-value=0.8 Score=41.52 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=23.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+|||++|+|.+|+.+.+-|.++. ++|..-|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG-YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT-TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC-CeEEeec
Confidence 59999999999999999998874 8876554
No 133
>PLN02928 oxidoreductase family protein
Probab=87.42 E-value=0.7 Score=47.53 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=27.3
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
-.+|||+|+|+||+.+.+.|...+ ++|++.+.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG-~~V~~~dr 190 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFG-VKLLATRR 190 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC-CEEEEECC
Confidence 358999999999999999998774 88887754
No 134
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.41 E-value=0.5 Score=39.27 Aligned_cols=92 Identities=28% Similarity=0.321 Sum_probs=57.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
.||+|.|.|+.|+.++...+....+.++++-|. +++.. | -.++| +++++. .
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~----------G-------------~~i~g--ipV~~~--~ 54 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI----------G-------------KEIGG--IPVYGS--M 54 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT----------T-------------SEETT--EEEESS--H
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc----------C-------------cEECC--EEeecc--H
Confidence 589999999999988755555456888888773 33211 1 11223 344411 1
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISap 211 (425)
+++.= ..++|+.+-|.......+.+...+++|.|-++.-+|
T Consensus 55 ~~l~~-~~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEE-FIEIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHH-HCTTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhh-hhCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11110 013899999998877888888999999998887543
No 135
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.37 E-value=2.2 Score=43.02 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=23.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||+|+|+|.||+.+++.|.....-+|..++
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~ 209 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIAN 209 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4999999999999999999875323443343
No 136
>PLN02712 arogenate dehydrogenase
Probab=87.19 E-value=1.2 Score=49.87 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=26.5
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||||+|+|.||+.+.+.|.+.+ ++|++++.
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr 83 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQG-HTVLAHSR 83 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 39999999999999999998774 78877754
No 137
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.17 E-value=3 Score=39.46 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=26.0
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
++|+|.|+|.+|+.+.+.|.+.+ .+|+ +.|
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D 58 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VAD 58 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEc
Confidence 48999999999999999998875 7888 555
No 138
>PRK07574 formate dehydrogenase; Provisional
Probab=87.07 E-value=0.74 Score=48.16 Aligned_cols=31 Identities=42% Similarity=0.471 Sum_probs=26.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|||+|+|+||+.++|.|... .++|.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEECC
Confidence 4899999999999999999876 488776654
No 139
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=86.89 E-value=1.2 Score=44.86 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=24.7
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCc-eEEEEc
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDV-DVVAVN 120 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~-evvaIn 120 (425)
+||+|.| +|.+|..++..|.+++.. +|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 4999999 599999999999887633 566554
No 140
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=86.88 E-value=0.8 Score=45.22 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=25.9
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
|++||+|+|+|.+|+.+.+.|... .++|...+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~-g~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKA-GYSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHC-CCeEEEEc
Confidence 456999999999999999998876 47776543
No 141
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.83 E-value=0.8 Score=46.29 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=26.4
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
-.+|||+|+|+||+.+.+.+... .++|++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-GMNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEECC
Confidence 35899999999999999988765 488877764
No 142
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=86.79 E-value=0.82 Score=46.57 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=24.3
Q ss_pred ceeEEEEccChHHHHHHHHHH-cCCCceEEEE
Q 014424 89 NTKVGINGFGRIGRLVLRVAA-FRDDVDVVAV 119 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~-~~~~~evvaI 119 (425)
-.+|||+|+|+|||.+.|.+. .. .++|++.
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f-gm~V~~~ 175 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF-NMPILYN 175 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC-CCEEEEE
Confidence 358999999999999999986 55 4777643
No 143
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=86.52 E-value=0.85 Score=46.61 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=24.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.++||+|+|+||+.+.|.+..- .++|..-+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 4899999999999999999855 47765444
No 144
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.27 E-value=2.5 Score=43.64 Aligned_cols=99 Identities=25% Similarity=0.304 Sum_probs=60.3
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCC--CceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEE
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRD--DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVF 164 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~--~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~ 164 (425)
.+.+|+||+|.|+|++.++++|..-| +..||||.++ +.+.- .-|. .-|+ +. ..++. .+ +
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~--s~~~A-~~fA--q~~~-~~-~~k~y-------~s-----y 64 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP--SLERA-KEFA--QRHN-IP-NPKAY-------GS-----Y 64 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc--cHHHH-HHHH--HhcC-CC-CCccc-------cC-----H
Confidence 34689999999999999999998776 7999999997 33322 1121 1111 10 11111 00 0
Q ss_pred ecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCC
Q 014424 165 SKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (425)
Q Consensus 165 ~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISap 211 (425)
+++ -++..+|+|.-++-.-.-.|.+-..+..| |.|++--|
T Consensus 65 -----EeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~EKP 104 (351)
T KOG2741|consen 65 -----EEL-AKDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLCEKP 104 (351)
T ss_pred -----HHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcC-CcEEeccc
Confidence 011 01246888888887777777776666544 34666444
No 145
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.19 E-value=1.4 Score=44.07 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|+|+|+|++|+.+++.|...+ ++|...+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeC
Confidence 48999999999999999998875 67765554
No 146
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.02 E-value=0.91 Score=47.76 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.4
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-.+|||+|+|+||+.+++.+... .++|++.+
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~d 181 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL-GMRVYFYD 181 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEC
Confidence 35899999999999999999877 48887665
No 147
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=86.02 E-value=4.1 Score=45.06 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=30.1
Q ss_pred CCCCceeEEEEc-cChHHHHHHHHHHcCCCceE-EEEcCCCCChHHH
Q 014424 85 RSDGNTKVGING-FGRIGRLVLRVAAFRDDVDV-VAVNDPFIDAKYM 129 (425)
Q Consensus 85 ~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~ev-vaInd~~~~~~~~ 129 (425)
.+.+.|||-|.| .|.||+.+++.|.+++ .++ ++..++ .+.+.+
T Consensus 376 ~~~~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~l-~d~~~v 420 (668)
T PLN02260 376 PGKPSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGRL-EDRSSL 420 (668)
T ss_pred CCCCCceEEEECCCchHHHHHHHHHHhCC-CeEEeecccc-ccHHHH
Confidence 444556999999 9999999999998764 666 344442 344433
No 148
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=85.93 E-value=3.9 Score=41.97 Aligned_cols=80 Identities=24% Similarity=0.242 Sum_probs=49.6
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEE-EcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVA-VNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evva-Ind~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
..+|-|-| .|.||.-+++.|++++ -.|.+ |.++ .+.+...||.+.+..--+ -++... .-
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~-~~~k~~~~L~~l~~a~~~----------l~l~~a-------DL 66 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDP-EDEKKTEHLRKLEGAKER----------LKLFKA-------DL 66 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCc-chhhhHHHHHhcccCccc----------ceEEec-------cc
Confidence 45999999 9999999999999997 45555 5554 455555566654421100 011111 11
Q ss_pred CCCCCCCCcccCcCEEEEccC
Q 014424 167 RDPAEIPWGDYGVDYVVESSG 187 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG 187 (425)
.|++.|+=.-.|+|+||-++-
T Consensus 67 ~d~~sf~~ai~gcdgVfH~As 87 (327)
T KOG1502|consen 67 LDEGSFDKAIDGCDGVFHTAS 87 (327)
T ss_pred cccchHHHHHhCCCEEEEeCc
Confidence 245555544568999988773
No 149
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.80 E-value=0.95 Score=46.20 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=26.1
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-.+|||+|+|+||+.+.+.|... .++|.+.+
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-G~~V~~~d 180 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-GMRILYYS 180 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 35899999999999999999876 47877664
No 150
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=85.75 E-value=2.9 Score=40.41 Aligned_cols=91 Identities=21% Similarity=0.074 Sum_probs=53.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
++++|.|+|.||.-+.+.+.... .||+-.+. -.++.+..+.+|-. .. + .-. ..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~--r~~~~~~a~a~~l~---------------~~-i-----~~~--~~~ 55 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSS--RGPKALAAAAAALG---------------PL-I-----TGG--SNE 55 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecC--CChhHHHHHHHhhc---------------cc-c-----ccC--ChH
Confidence 59999999999999999888763 67664443 35555545443221 00 0 111 112
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHh-CCCCEEEEeCC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMK-GGAKKVVISAP 211 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~-aGakkVVISap 211 (425)
+.. ...|+||-+..-..-.+-.+.+.. -| .|+||+..
T Consensus 56 dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~t 93 (211)
T COG2085 56 DAA----ALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDAT 93 (211)
T ss_pred HHH----hcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecC
Confidence 222 368999998865544444444432 23 57888654
No 151
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.57 E-value=1 Score=45.67 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=26.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|||+|+|.||+.+.+.|... .++|.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 4899999999999999999876 488776653
No 152
>PLN02712 arogenate dehydrogenase
Probab=85.46 E-value=1.3 Score=49.68 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=41.8
Q ss_pred CCcccccccccccCcccccccCCccccCCCCCCceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 56 SSSLQTCAAKGIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
++....+....-||........... ...+++||||+|+|.||+.+.+.|.+.+ .+|++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~dr 400 (667)
T PLN02712 340 SSLDMMRFQGVAQKYEYNAQVSGCV----NDGSKLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYSR 400 (667)
T ss_pred hhhhhhhhhcccCCCCccchhhhcc----CCCCCCEEEEEecCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 4555566666777877654222111 2234469999999999999999998764 68887765
No 153
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.33 E-value=4.5 Score=40.09 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=47.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|+|.|.||...++++...+ ...+.+-+. +.+.+....+ + ..++ +.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~--~~~rl~~a~~-------~-----------~~i~-----------~~ 194 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET--NPRRRDGATG-------Y-----------EVLD-----------PE 194 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC--CHHHHHhhhh-------c-----------cccC-----------hh
Confidence 7899999999999998887764 554433342 3333211110 0 0011 00
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEE
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkV 206 (425)
+- ...++|+||||+|.-...+.+-..++.|.+-+
T Consensus 195 ~~--~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 195 KD--PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred hc--cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEE
Confidence 00 12478999999997655555556666555333
No 154
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.15 E-value=1.1 Score=45.77 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
++|||+|+|+||+.+.+.|... .++|++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEe
Confidence 4899999999999999999876 47887664
No 155
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=85.01 E-value=1.2 Score=46.78 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=25.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|+|+|+|.+|+.+++.|...+-.+|+.++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 48999999999999999998774245555554
No 156
>PLN02256 arogenate dehydrogenase
Probab=84.95 E-value=1.2 Score=45.01 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=28.0
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+.++||+|+|+|.+|+.+.+.|.+.+ .+|++++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~ 67 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSR 67 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEEC
Confidence 34569999999999999999998764 68877765
No 157
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.77 E-value=2.3 Score=42.65 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=25.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||.|+|+|++|+.+++.|...+ .+|..++.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r 183 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGAR 183 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 59999999999999999998875 67665544
No 158
>PLN02306 hydroxypyruvate reductase
Probab=84.70 E-value=1.2 Score=46.63 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=25.1
Q ss_pred ceeEEEEccChHHHHHHHHHH-cCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAA-FRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~-~~~~~evvaIn 120 (425)
-.+|||+|||+||+.+.|.+. .. .++|.+.+
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d 196 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYD 196 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-CCEEEEEC
Confidence 358999999999999999875 55 47877664
No 159
>PLN02572 UDP-sulfoquinovose synthase
Probab=84.58 E-value=1.9 Score=45.52 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=30.6
Q ss_pred CccccCCCCCCceeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 78 PPTIQKSRSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 78 ~~~~~~~~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
|.++..+..-+++||-|.| +|.||+.++|.|.+++ .+|+++.
T Consensus 36 ~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 36 PSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 3333333333445899999 9999999999999874 7887764
No 160
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=84.42 E-value=1.8 Score=45.30 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=61.7
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhhhcccccCCccce-EEEeCCC---eEE--EC--CE
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDS---TLE--IN--GK 159 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~-v~~~~~~---~l~--i~--Gk 159 (425)
.||+|.| ||-||++.++.+..++ +|+|+++.. ..+.+.+....+ .|... +-..++. .+. .. |.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa-~~n~~~L~~q~~------~f~p~~v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSA-GKNVALMVEQIL------EFRPKFVAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHH------HcCCCEEEEcCHHHHHHHHHHhhcCCC
Confidence 4899999 9999999999988775 599999976 345555544433 12111 1111100 000 01 21
Q ss_pred EEEEEecCC-CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeC
Q 014424 160 LIKVFSKRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (425)
Q Consensus 160 ~I~v~~~~d-p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISa 210 (425)
.++++...+ ..++ -....+|+|+-+.-.+.-..-.-.++++| |++-+.|
T Consensus 75 ~~~v~~G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 75 RTEVLVGEEGICEM-AALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 133332211 1111 01125899999985555555555677777 5565543
No 161
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.22 E-value=6.9 Score=39.21 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=51.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.||...++++.... . .|+++.. +.+.+..+.+ +|- ...++-+.-.+. + .
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~---~~~~~~~a~~----lGa-----------~~vi~~~~~~~~-~--~ 229 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG-AAEIVCADV---SPRSLSLARE----MGA-----------DKLVNPQNDDLD-H--Y 229 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEeC---CHHHHHHHHH----cCC-----------cEEecCCcccHH-H--H
Confidence 7999999999999998887774 5 4554432 3444433322 121 111111000010 0 0
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.. .. .++|+||||+|.-.+.+.+-..++.|-+-+++
T Consensus 230 ~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 230 KA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred hc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00 01 25899999999755555666777766543333
No 162
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=84.18 E-value=2.3 Score=41.64 Aligned_cols=102 Identities=26% Similarity=0.360 Sum_probs=57.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCC--------CChHHHhHhhh-cccccCCccceEEEeCCCeEEECCEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPF--------IDAKYMAYMFK-YDSTHGVFKGTINVVDDSTLEINGKL 160 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~--------~~~~~~ayll~-yDS~~g~f~~~v~~~~~~~l~i~Gk~ 160 (425)
.+|+|-|||-+|+.+++.|.+.. ..+|+|.|.. .+.+.+..+.. +.+....|... . .+ +
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~--~-~~------~-- 100 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG-AKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLE--S-PD------G-- 100 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT-EEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHT--C-SS------T--
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccc--c-cc------c--
Confidence 59999999999999999999984 8899995521 23333333211 11101111100 0 00 0
Q ss_pred EEEEecCCCCCCCCcccCcCEEEEcc-CcccCHHHHHHHHhCCCCEEE
Q 014424 161 IKVFSKRDPAEIPWGDYGVDYVVESS-GVFTTIAKASAHMKGGAKKVV 207 (425)
Q Consensus 161 I~v~~~~dp~~i~W~~~gvDiV~esT-G~f~s~e~a~~hl~aGakkVV 207 (425)
...+.. .+++ | ...+||.+=|. +.-++.+-++..++.|||-|+
T Consensus 101 ~~~~~~--~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIv 144 (244)
T PF00208_consen 101 AEYIPN--DDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAKIIV 144 (244)
T ss_dssp SEEECH--HCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEE
T ss_pred eeEecc--cccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCcEEE
Confidence 001110 0112 4 35899999997 666777777767788886543
No 163
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=84.04 E-value=1.3 Score=46.35 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.8
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-.+|||+|+|.||+.+.+.|... .+++.+.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~-G~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL-GIKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 35899999999999999999877 48876553
No 164
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=83.68 E-value=2.2 Score=44.68 Aligned_cols=108 Identities=21% Similarity=0.270 Sum_probs=58.7
Q ss_pred EEc-cChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhhhcccccCCccce-EEEeCC---CeEE--ECCEEEEEEe
Q 014424 94 ING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDD---STLE--INGKLIKVFS 165 (425)
Q Consensus 94 InG-fGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~-v~~~~~---~~l~--i~Gk~I~v~~ 165 (425)
|.| ||-||++.++.+..++ +|+|+++.. ..+.+.+....+ .|... +-..++ ..+. ..|..++++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa-~~n~~~L~~q~~------~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTA-NYNIELLEQQIK------RFQPRIVSVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEEC-CCCHHHHHHHHH------HhCCCEEEEcCHHHHHHHHHhccCCCcEEEE
Confidence 579 9999999999998765 599999977 346665554443 12211 111110 0000 1121123332
Q ss_pred cCC-CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeC
Q 014424 166 KRD-PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (425)
Q Consensus 166 ~~d-p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISa 210 (425)
..+ ..++ -....+|+|+-+.-.+.-.+-.-.++++| |++-+.|
T Consensus 74 G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 117 (383)
T PRK12464 74 GTDGLIAV-ATHPGSDLVLSSVVGAAGLLPTIEALKAK-KDIALAN 117 (383)
T ss_pred CHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 111 1111 01126899999985555555555678888 5565643
No 165
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=83.66 E-value=3 Score=39.65 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=23.4
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaI 119 (425)
|||+|+| +|.+|..+.+.|.+.. .+|+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 3899997 9999999999998774 465544
No 166
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=83.48 E-value=4 Score=41.49 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=24.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
.||+|+|.|.+|..+...+..++-.+| .+-|.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i-~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDV-VLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeE-EEEeC
Confidence 489999999999999888776643463 45453
No 167
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.35 E-value=1.2 Score=39.20 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.7
Q ss_pred eEEEEccChHHHHHHHHHHcCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~ 112 (425)
||.|+|.|.+|..+++.|...+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G 22 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG 22 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 6899999999999999998764
No 168
>PLN03139 formate dehydrogenase; Provisional
Probab=83.26 E-value=1.3 Score=46.31 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=25.6
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-.+|||+|+|+||+.+++.|... .++|.+.+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-G~~V~~~d 229 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-NCNLLYHD 229 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-CCEEEEEC
Confidence 35899999999999999999865 47876553
No 169
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=83.21 E-value=3.7 Score=35.45 Aligned_cols=80 Identities=25% Similarity=0.235 Sum_probs=53.3
Q ss_pred eEEEEc----cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 91 KVGING----FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 91 kVaInG----fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
+|||+| -+..|+.+++.|.++ .++|..||-. +++ +.|.+ .+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~------------~~~------------------i~G~~--~y~- 47 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPK------------GGE------------------ILGIK--CYP- 47 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTT------------CSE------------------ETTEE---BS-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCC------------ceE------------------ECcEE--eec-
Confidence 699999 499999999999986 4899889852 122 12211 221
Q ss_pred CCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
+.+++| ..+|+++-++......+..+...+.|++.+++
T Consensus 48 -sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~ 85 (116)
T PF13380_consen 48 -SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWL 85 (116)
T ss_dssp -SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE
T ss_pred -cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 122222 47899999999888888888888889999988
No 170
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.65 E-value=10 Score=36.81 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=71.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|.|.|.||...++++.... .. |+++ +. +.+.+..+.++ |- ...++.+.. .+ ..
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~-~~--~~~r~~~a~~~----Ga-----------~~~i~~~~~---~~-~~ 179 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG-AARVVAA-DP--SPDRRELALSF----GA-----------TALAEPEVL---AE-RQ 179 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE-CC--CHHHHHHHHHc----CC-----------cEecCchhh---HH-HH
Confidence 7899999999999998887764 55 6655 32 33433222221 11 011111000 00 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccc-cCCCCcEEecCCchhhhHHhHH
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKT-YKPNMNIVSNASCTTNCLAPLA 248 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~-~~~~~~IISnaSCTTn~Lap~l 248 (425)
.++. ...++|+||||+|.-...+.+-..++.|.+.+++.......+ ..+|... +.++..|+..-..+...+..++
T Consensus 180 ~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~ 255 (280)
T TIGR03366 180 GGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQAV 255 (280)
T ss_pred HHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCc---eeeCHHHHHhCCcEEEecCCCCHHHHHHHH
Confidence 0011 123799999999876666666677777765555653322111 1233222 2234456655444444556666
Q ss_pred HHHHh
Q 014424 249 KVVHE 253 (425)
Q Consensus 249 k~L~d 253 (425)
+.|.+
T Consensus 256 ~~l~~ 260 (280)
T TIGR03366 256 RFLAA 260 (280)
T ss_pred HHHHh
Confidence 66654
No 171
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=82.43 E-value=2.1 Score=42.89 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.2
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
|+++|+|+|+|.||+.+.|.|.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 3469999999999999999998875
No 172
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=82.34 E-value=6.6 Score=39.82 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=23.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~-evvaI 119 (425)
.||+|+|.|.||..++-.|..++-+ +|+-+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~ 37 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVII 37 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 3999999999999999988877543 45433
No 173
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.21 E-value=4.5 Score=42.81 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=23.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
-+|+|.|+|.||+.+++.+...+ ..|+.+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 38999999999999999988775 576543
No 174
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=81.92 E-value=12 Score=36.77 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.9
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+|-|.| +|.||+.+++.|.+++ .+|+++.
T Consensus 6 ~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 6 VVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred EEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 899999 9999999999999885 6776654
No 175
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.78 E-value=4.9 Score=42.67 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
.+|+|.|+|.||+.+++.+.... ..|+.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 38999999999999999998774 676544
No 176
>PRK08818 prephenate dehydrogenase; Provisional
Probab=81.44 E-value=5.3 Score=41.63 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=24.7
Q ss_pred ceeEEEEcc-ChHHHHHHHHHHcCCCceEEEE
Q 014424 89 NTKVGINGF-GRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 89 ~ikVaInGf-GrIGr~vlr~l~~~~~~evvaI 119 (425)
..||+|+|. |.||+.+.++|.+....+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 359999997 9999999999986534666544
No 177
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.39 E-value=5.1 Score=40.57 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=21.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVV 117 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evv 117 (425)
||+|+|.|.||..++-.|..++-+ |++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elv 28 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIV 28 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEE
Confidence 799999999999998888776533 444
No 178
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=80.86 E-value=2.9 Score=43.47 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=34.5
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCC-CceEEEEcCCCCChHHHhHhh
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYMAYMF 133 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ayll 133 (425)
.|+.|.| ||-||.+.|+.+.++| .|+|+++..- ...+.+....
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag-~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG-KNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC-CcHHHHHHHH
Confidence 4899999 9999999999999886 5899999773 4566554443
No 179
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=80.85 E-value=3.1 Score=43.78 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=24.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCc-eEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~-evvaInd 121 (425)
.+|+|+|+|.+|+.+++.|...+ + +|+.++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 48999999999999999998764 5 4544443
No 180
>PRK08605 D-lactate dehydrogenase; Validated
Probab=80.16 E-value=2.3 Score=43.37 Aligned_cols=31 Identities=42% Similarity=0.475 Sum_probs=23.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
++|||+|+|+||+.+.+.|...-.++|.+.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d 177 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYD 177 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 4899999999999999998432246776553
No 181
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=79.78 E-value=2.3 Score=44.53 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
.+|||+|+|.||+.+.+.|... .+++.+.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~-G~~V~~~ 145 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL-GWKVLVC 145 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence 5899999999999999999877 4887654
No 182
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=79.54 E-value=3.3 Score=41.34 Aligned_cols=24 Identities=17% Similarity=0.345 Sum_probs=21.1
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..+|.|+|.|-+|..+++.|...+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 458999999999999999998754
No 183
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=79.24 E-value=5.8 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.4
Q ss_pred ceeEEEEcc-ChHHHHHHHHHHcC
Q 014424 89 NTKVGINGF-GRIGRLVLRVAAFR 111 (425)
Q Consensus 89 ~ikVaInGf-GrIGr~vlr~l~~~ 111 (425)
++||+|+|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 489999997 99999999888766
No 184
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=79.23 E-value=2.3 Score=46.13 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=26.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|||+|+|+||+.+.+.|... .++|.+.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEECC
Confidence 5899999999999999999876 488877753
No 185
>PRK05442 malate dehydrogenase; Provisional
Probab=79.03 E-value=7.5 Score=39.77 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.6
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFR 111 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~ 111 (425)
.||+|+|. |.||..++-.|..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh
Confidence 49999996 99999988777654
No 186
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.57 E-value=2.5 Score=39.56 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=25.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHH
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ 129 (425)
|||+|.|.|++|-.+.-++.+++ ++|+++.- +.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~---~~~~v 36 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVDI---DEEKV 36 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE-S----HHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEEeC---ChHHH
Confidence 49999999999999888888774 89888742 45544
No 187
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.31 E-value=2.5 Score=45.83 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=27.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
-.+|||+|+|+||+.+.+.|... .++|.+.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-GMKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECC
Confidence 35899999999999999999876 488887753
No 188
>PLN02778 3,5-epimerase/4-reductase
Probab=77.94 E-value=6.3 Score=39.11 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=26.5
Q ss_pred CCCCceeEEEEc-cChHHHHHHHHHHcCCCceEEE
Q 014424 85 RSDGNTKVGING-FGRIGRLVLRVAAFRDDVDVVA 118 (425)
Q Consensus 85 ~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~evva 118 (425)
.+.|++||-|.| +|.||+.+++.|.+++ .+++.
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 345566999999 9999999999999875 56653
No 189
>PLN00106 malate dehydrogenase
Probab=77.84 E-value=12 Score=38.17 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEcc-ChHHHHHHHHHHcCCCc-eEE
Q 014424 91 KVGINGF-GRIGRLVLRVAAFRDDV-DVV 117 (425)
Q Consensus 91 kVaInGf-GrIGr~vlr~l~~~~~~-evv 117 (425)
||+|.|. |.||..+...|..++.+ +++
T Consensus 20 KV~IiGaaG~VG~~~a~~l~~~~~~~el~ 48 (323)
T PLN00106 20 KVAVLGAAGGIGQPLSLLMKMNPLVSELH 48 (323)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCEEE
Confidence 9999996 99999999988866433 344
No 190
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.47 E-value=8.7 Score=37.13 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.1
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|-|.| +|.||+.+++.|.++ ..+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 589999 999999999999987 478887765
No 191
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=77.04 E-value=3 Score=42.87 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.0
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
.+|||+|+|.||+.+.+.|... .++|+..+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence 4899999999999999999887 4888766553
No 192
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=76.92 E-value=8.9 Score=38.04 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=52.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.||...++++.... .. ++++.. +.+.+..+.++ |- ...++-+.-. .. ..
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~---~~~~~~~~~~~----ga-----------~~~i~~~~~~-~~--~~ 223 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALG-AEDVIGVDP---SPERLELAKAL----GA-----------DFVINSGQDD-VQ--EI 223 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECC---CHHHHHHHHHh----CC-----------CEEEcCCcch-HH--HH
Confidence 8999999999999998887764 56 766643 23333222221 11 0111110000 00 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.++. ...++|+||||+|.....+.+-..++.|.+.+++
T Consensus 224 ~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 224 RELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0010 1137999999998765555566677766644434
No 193
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=76.21 E-value=10 Score=36.22 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=27.4
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCce-EEEEcC
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVD-VVAVND 121 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~e-vvaInd 121 (425)
++..-|+| +|..|+.+++.+.|.|.|- |++|..
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 45788999 9999999999999999874 555644
No 194
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=75.50 E-value=3.8 Score=41.06 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=27.2
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||-|.| +|.||+.+++.|.++...+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4899999 8999999999998764578888864
No 195
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.18 E-value=27 Score=37.00 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=25.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||.|+|.|.+|..+++.|.+++ .+|+.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 38999999999999999998875 6766554
No 196
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=75.14 E-value=18 Score=36.73 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=52.5
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.||...++++.... . .|+++.. +.+.+..+.++ |- ...++.+.-.... ..
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~---~~~r~~~a~~~----Ga-----------~~~i~~~~~~~~~--~i 252 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG-ASQVVAVDL---NEDKLALAREL----GA-----------TATVNAGDPNAVE--QV 252 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEcC---CHHHHHHHHHc----CC-----------ceEeCCCchhHHH--HH
Confidence 7999999999999998887764 5 4665532 34444333221 11 0111110000000 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEe
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVIS 209 (425)
.++. ..++|+||||+|.....+.+-..++.|.+.+.+.
T Consensus 253 ~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 253 RELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 0111 1279999999987656666667777666444443
No 197
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=74.94 E-value=16 Score=39.26 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=54.5
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChH-HHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAK-YMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~-~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
+||+|.|.|.-|+.++|.|.++. .++. ++|....+. .....+. .++ |.+.....
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G-~~v~-v~D~~~~~~~~~~~~~~--------------~~~---------i~~~~g~~ 62 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLG-AEVT-VSDDRPAPEGLAAQPLL--------------LEG---------IEVELGSH 62 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCC-CeEE-EEcCCCCccchhhhhhh--------------ccC---------ceeecCcc
Confidence 59999999999999999999885 5654 445211111 0000000 001 11221222
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCC
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGak 204 (425)
+. .+|. +.|+|+-+=|...+.....++.+.|.+
T Consensus 63 ~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 63 DD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 22 4453 789999999999888888888888883
No 198
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=74.46 E-value=39 Score=33.06 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=53.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|.|.|.+|+.+++++.... ++++++.+. .+....+-+ +|- ...++.+ ..
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~---~~~~~~~~~----~g~-----------~~~~~~~--------~~- 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG-AEVFAFTRS---GEHQELARE----LGA-----------DWAGDSD--------DL- 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEcCC---hHHHHHHHH----hCC-----------cEEeccC--------cc-
Confidence 7889999999999998877764 788777653 222222211 110 0111100 00
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.+.++|+++++++.....+.+..+++.|...+.+
T Consensus 222 ----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 222 ----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred ----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 1237899999987777778888888877655544
No 199
>PLN00203 glutamyl-tRNA reductase
Probab=74.28 E-value=12 Score=40.78 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=25.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|+|+|+|.+|+.+++.|..++--+|..+|.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 48999999999999999998875224555554
No 200
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=74.16 E-value=4.2 Score=35.81 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=25.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCce-EEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~e-vvaInd 121 (425)
-||.|+|.|-+||.++..|...+ +. |.-+|.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 48999999999999999999884 44 555665
No 201
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=74.03 E-value=13 Score=37.35 Aligned_cols=86 Identities=21% Similarity=0.118 Sum_probs=55.0
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
-||-|.| +|++|+.+++-+..-+.-.+.+||- +++..++ .| ++.+ +.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p------------------~~~~~~v----------~G--~~~y--~s 54 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTP------------------GKGGTTV----------LG--LPVF--DS 54 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEECC------------------CCCccee----------cC--eecc--CC
Confidence 3899999 9999999998887765234444653 1211111 11 1122 12
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.+++|..- ++|+++-+.......+-.....+.|+|.+||
T Consensus 55 v~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 55 VKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred HHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 33444211 3799999998887777777888899988766
No 202
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=73.86 E-value=32 Score=34.50 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=53.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEe-cCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS-KRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~-~~dp 169 (425)
+|.|.|.|.+|...++++...+ ..++++.. +.+.+..+.++ |- ...++-+...... ....
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~---~~~~~~~~~~~----Ga-----------~~~i~~~~~~~~~~~~~~ 229 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMG-AAVVAIDI---DPEKLEMMKGF----GA-----------DLTLNPKDKSAREVKKLI 229 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHh----CC-----------ceEecCccccHHHHHHHH
Confidence 7999999999999999888774 57766643 34444333222 11 0111110000000 0000
Q ss_pred CCCCCcccCcC----EEEEccCcccCHHHHHHHHhCCCCEEEEeCC
Q 014424 170 AEIPWGDYGVD----YVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (425)
Q Consensus 170 ~~i~W~~~gvD----iV~esTG~f~s~e~a~~hl~aGakkVVISap 211 (425)
.++ ....|+| +||||+|.....+.+-..++.|.+-+++..+
T Consensus 230 ~~~-t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 230 KAF-AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred Hhh-cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcC
Confidence 000 0112454 8999999766666666777777644444433
No 203
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.78 E-value=4.8 Score=40.82 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~-evvaI 119 (425)
.||+|+|.|.||..++-.|..++-. ||+-+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li 34 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLV 34 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 4999999999999998888776532 45544
No 204
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=73.77 E-value=14 Score=37.07 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=21.9
Q ss_pred eEEEEccChHHHHHHHHHHc-CCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAF-RDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~-~~~~evvaIn 120 (425)
+|.|.|.|.||...++++.. .....++++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 79999999999988877654 3334565553
No 205
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.56 E-value=16 Score=37.21 Aligned_cols=30 Identities=17% Similarity=0.562 Sum_probs=24.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.|.|.||...++++.... .+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 7899999999999998887764 67666543
No 206
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.43 E-value=38 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=25.0
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||-|+|.|.+|...++.|.+.+ .+|+-|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 38999999999999999998875 56665653
No 207
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=73.23 E-value=10 Score=39.27 Aligned_cols=110 Identities=22% Similarity=0.331 Sum_probs=61.2
Q ss_pred CCccccCCCCCCceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEE
Q 014424 77 IPPTIQKSRSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI 156 (425)
Q Consensus 77 ~~~~~~~~~~~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i 156 (425)
+....+.....---.|+|.|.|-||-..+..+..-..-.|+||.- .++.+..-.++--| =.+
T Consensus 174 ~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~---~~~Kl~~A~~fGAT---------------~~v 235 (366)
T COG1062 174 IGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDI---NPEKLELAKKFGAT---------------HFV 235 (366)
T ss_pred hHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeC---CHHHHHHHHhcCCc---------------eee
Confidence 333444443332247999999999998887776554457788742 34444443332222 223
Q ss_pred CCEEEE-EEecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 157 NGKLIK-VFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 157 ~Gk~I~-v~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
|.++.. +.+ ...++ | +.|+|++|||+|.-...+.+-.....+=+.|+|
T Consensus 236 n~~~~~~vv~--~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 236 NPKEVDDVVE--AIVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred cchhhhhHHH--HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 333221 110 01112 2 249999999999887776665555444434444
No 208
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=73.01 E-value=26 Score=34.23 Aligned_cols=85 Identities=25% Similarity=0.285 Sum_probs=51.8
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|+|.|.+|+.+++++.... .+++++.. +.+...++.++.. + ..++-+ +.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G-~~vi~~~~---~~~~~~~~~~~g~-------~--------~~~~~~--------~~- 209 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTG-PDVVLVGR---HSEKLALARRLGV-------E--------TVLPDE--------AE- 209 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHcCC-------c--------EEeCcc--------cc-
Confidence 7899999999999999988774 77766644 3444434332211 0 001100 00
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEE
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKV 206 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkV 206 (425)
.++ .++|++|||+|.-...+.+..+++.+.+.+
T Consensus 210 -~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 210 -SEG--GGFDVVVEATGSPSGLELALRLVRPRGTVV 242 (319)
T ss_pred -ccC--CCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 122 479999999987555566667777665333
No 209
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.60 E-value=32 Score=34.60 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=24.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCce-EEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~e-vvaInd 121 (425)
-+|.|.|.|.||...++++.... .+ ++++..
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~ 209 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDI 209 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 37999999999999998888774 54 666643
No 210
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=72.32 E-value=6.1 Score=33.02 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=25.6
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHH
Q 014424 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKY 128 (425)
Q Consensus 92 VaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~ 128 (425)
|-|.|+|++|+.+++.|.++ ..+++.|.. +++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~---d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDR---DPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEES---SHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEEC---CcHH
Confidence 46899999999999999985 578887765 4544
No 211
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.22 E-value=4.7 Score=42.40 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=29.5
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHh
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMA 130 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~a 130 (425)
+||+|+|.|.+|..+...|.+++ ++|++++- +++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~---~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDI---NQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeC---CHHHHH
Confidence 59999999999999999998874 78877753 455443
No 212
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=72.18 E-value=24 Score=36.51 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=60.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
-+|+|.|+|-.|...++.+.... .+|+++.. +.+.+....+ . +....++.+ ++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~---~~~K~e~a~~-------------l--GAd~~i~~~--------~~ 220 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR---SEEKLELAKK-------------L--GADHVINSS--------DS 220 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC---ChHHHHHHHH-------------h--CCcEEEEcC--------Cc
Confidence 38999999999998888887665 89999865 3343322211 1 222333321 12
Q ss_pred CCCC-CcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCC
Q 014424 170 AEIP-WGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAP 211 (425)
Q Consensus 170 ~~i~-W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISap 211 (425)
+.+. ..+ -+|+++++.+ ..+.+.+-..++.|-+-|++..|
T Consensus 221 ~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 221 DALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1111 111 2899999999 88888888888887767777655
No 213
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=71.97 E-value=17 Score=38.19 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.7
Q ss_pred ceeEEEEcc-ChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGF-GRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGf-GrIGr~vlr~l~~~~ 112 (425)
++||+|+|. |.||..++-.|..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 479999996 999999998887664
No 214
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=71.61 E-value=5 Score=40.03 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=25.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||||+|+|.+|+.+++.|.+.. ++|+..+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g-~~v~v~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGG-HEVVGYDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCC-CeEEEEEC
Confidence 8999999999999999998774 77765543
No 215
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.38 E-value=7.8 Score=37.56 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.1
Q ss_pred eEEEEccChHHHHHHHHHHcCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~ 112 (425)
||||+|+|.+|+.+++.|...+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g 23 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSP 23 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCC
Confidence 8999999999999999998763
No 216
>PLN02427 UDP-apiose/xylose synthase
Probab=71.21 E-value=5.4 Score=40.74 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=27.4
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||-|.| +|.||+.+++.|.+++..+|+++..
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 4899999 9999999999999874468888864
No 217
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.05 E-value=27 Score=35.58 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.0
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~ 112 (425)
|||+|+|. |.||..++-.|..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999996 999999998887765
No 218
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.85 E-value=3 Score=39.84 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..||.|+|.|-+|..+++.|...+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 458999999999999999998664
No 219
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.58 E-value=11 Score=38.31 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.6
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~ 112 (425)
.||+|+|. |.||..++-.|..++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc
Confidence 49999996 999999988887653
No 220
>PRK08618 ornithine cyclodeaminase; Validated
Probab=70.58 E-value=7.7 Score=39.31 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
-+|+|+|.|.+|+..++++.....++-+.|-+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 389999999999999988765445777777664
No 221
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=69.67 E-value=8.9 Score=37.98 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=25.3
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCC---ceEEEEc
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDD---VDVVAVN 120 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~---~evvaIn 120 (425)
|.+||+|+|+|.+|..+++.|.+++. .+|...+
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 55699999999999999999987642 2455443
No 222
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=69.17 E-value=7.4 Score=42.93 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=30.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHh
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayl 132 (425)
.+|-|.|+||+|+.+.|.|.++ +.+++.|.. |++..-.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEEC---CHHHHHHH
Confidence 4899999999999999999877 478888854 56654333
No 223
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=69.09 E-value=6.2 Score=39.36 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=24.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||||+|+|.+|+.+.+.|.+.. ++|+..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~v~d 30 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVVGYD 30 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEE
Confidence 8999999999999999998774 7777554
No 224
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=69.04 E-value=15 Score=37.12 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=24.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCc-eEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDV-DVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~-evvaInd 121 (425)
-+|.|.|.|.||...++++...+ . .++++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~ 220 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG-ASRIIGVDL 220 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 37999999999999999888764 5 5666643
No 225
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=68.99 E-value=2.7 Score=39.74 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=21.3
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..||.|+|.|-+|..+++.|...+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G 44 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG 44 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999998764
No 226
>PRK08219 short chain dehydrogenase; Provisional
Probab=68.94 E-value=6.5 Score=36.15 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=26.1
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|++++-|.| .|.||+.+++.|.++ .+|+++..
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 345899999 999999999999877 67777754
No 227
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=68.68 E-value=4.3 Score=41.84 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCceeEEEEccChHHHHHHHHHHcC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~ 111 (425)
.+-.+|+|+|+|+||+.+++-|..-
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhc
Confidence 3445999999999999999988654
No 228
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.60 E-value=2.7 Score=38.86 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEccChHHHHHHHHHHcCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~ 112 (425)
||.|+|.|-+|..++..|...+
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999987664
No 229
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=68.47 E-value=5.7 Score=39.18 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=25.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||||+|+|.+|+.+.+.|.++. ++|...+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEEEcC
Confidence 6899999999999999998774 78776543
No 230
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.44 E-value=15 Score=37.49 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.8
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~ 112 (425)
.||+|.|. |.||..++..|..++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999995 999999998888654
No 231
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=68.27 E-value=1.9 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=19.7
Q ss_pred eEEEEccChHHHHHHHHHHcCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~ 112 (425)
||.|+|.|-+|-.+++.|...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998654
No 232
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=68.22 E-value=12 Score=34.82 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=22.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
||||+|.|.+|+.+...+... .++|+-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~ 28 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLY 28 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEE
Confidence 799999999999999888887 4786644
No 233
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=68.06 E-value=6.5 Score=39.22 Aligned_cols=29 Identities=34% Similarity=0.613 Sum_probs=24.8
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||||+|+|++|..+.+.|.++ .++|+..+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~~d 30 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVGYD 30 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEEEE
Confidence 899999999999999999877 47876654
No 234
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=67.64 E-value=8.2 Score=42.82 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=29.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHH
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ 129 (425)
-+|-|.||||+||.+.|.|.++ +++++.|.. |++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v 436 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDH---DPDHI 436 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEEC---CHHHH
Confidence 3889999999999999999887 488887854 56654
No 235
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=67.54 E-value=8.9 Score=39.30 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=26.7
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r 53 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEG-HYIIASDW 53 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCC-CEEEEEEe
Confidence 4999999 9999999999999874 68877754
No 236
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=67.37 E-value=21 Score=35.40 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEc-cChHHHHHHHHHHcCCC-ceEE
Q 014424 94 ING-FGRIGRLVLRVAAFRDD-VDVV 117 (425)
Q Consensus 94 InG-fGrIGr~vlr~l~~~~~-~evv 117 (425)
|.| .|.+|+.+++.|.++++ .+|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr 27 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVR 27 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEE
Confidence 567 99999999999999875 3443
No 237
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=67.23 E-value=6.2 Score=41.18 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||+|+|.|++|..+...|.+.+ .+|++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 8999999999999999998774 6777664
No 238
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.06 E-value=6.8 Score=40.82 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|.|+|++|+.+++.|.++ +.+++.|..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~ 31 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDT 31 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEEC
Confidence 899999999999999999876 478887754
No 239
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=66.97 E-value=7.8 Score=38.35 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.1
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|||-|.| .|.+|+.+.+.+.++ .+++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCc
Confidence 5999999 899999999999886 588888854
No 240
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.85 E-value=28 Score=37.32 Aligned_cols=83 Identities=22% Similarity=0.187 Sum_probs=49.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
.||.|.|.|++|+..++.|..+. .+++ +.|. ..+....+.+ + +-.+ +.| ...+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~-~~D~--~~~~~~~l~~----~-----------g~~~-~~~-------~~~~ 65 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPT-VCDD--DPDALRPHAE----R-----------GVAT-VST-------SDAV 65 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEE-EEcC--CHHHHHHHHh----C-----------CCEE-EcC-------cchH
Confidence 38999999999999999988775 5655 4563 2322222211 0 1011 111 1112
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGa 203 (425)
+.+ .+.|+||.|.|.-.+.....++.+.|.
T Consensus 66 ~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 66 QQI----ADYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hHh----hcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 223 257999999998776666666666666
No 241
>PRK05865 hypothetical protein; Provisional
Probab=66.60 E-value=18 Score=41.89 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=25.9
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R 32 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG-HEVVGIAR 32 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 899999 8999999999998874 68777754
No 242
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=66.17 E-value=59 Score=35.48 Aligned_cols=29 Identities=28% Similarity=0.170 Sum_probs=23.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
-||.|.|.|.||...++.+...+ -+|+++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~ 194 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AIVRAF 194 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEE
Confidence 49999999999999999988775 455544
No 243
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.09 E-value=7.8 Score=38.77 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=24.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||+|+|+|.+|+.+.+.|...+ .+|...+
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~ 34 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANG-HRVRVWS 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCC-CEEEEEe
Confidence 8999999999999999998774 5665444
No 244
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=66.03 E-value=3 Score=40.04 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
.+..||.|+|.|-+|..+++.|...+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcC
Confidence 34569999999999999999997664
No 245
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=65.42 E-value=33 Score=34.71 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=51.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|+|.|.||..+++++.... ..++.+.. +.+....+++ .+|- + .. ++... +....
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~---~~~~~~~~~~---~~Ga---~-------~~-i~~~~-----~~~~~ 239 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMG-HHVTVISS---SDKKREEALE---HLGA---D-------DY-LVSSD-----AAEMQ 239 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCC-CeEEEEeC---CHHHHHHHHH---hcCC---c-------EE-ecCCC-----hHHHH
Confidence 7889999999999999888774 66666654 2222212221 1121 0 00 11000 00001
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
... .++|+||||+|...+.+.+-..++.|.+.+.+
T Consensus 240 ~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 240 EAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Hhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEE
Confidence 111 26899999999655556666677766644444
No 246
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.68 E-value=8.8 Score=37.73 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=25.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||+|+|.|.+|..+...+..++ .+|+.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g-~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG-YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC-CceEEEe
Confidence 38999999999999999998874 6777653
No 247
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.66 E-value=9.2 Score=37.78 Aligned_cols=32 Identities=13% Similarity=0.355 Sum_probs=25.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCC---ceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~---~evvaInd 121 (425)
+||+|+|+|.+|..+++.|.+.+. .+|+.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 489999999999999999887642 46666654
No 248
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.42 E-value=9.5 Score=37.54 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=24.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCC---CceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD---DVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~---~~evvaIn 120 (425)
+||+|+|.|.+|+.+++.|.+++ ..+|+..+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 39999999999999999998764 13555444
No 249
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=63.92 E-value=10 Score=37.95 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=23.7
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
++||+|+|.|.||..+...|.+.. .++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~ 35 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLL 35 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 359999999999999998887753 4544343
No 250
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=63.87 E-value=13 Score=35.39 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=25.9
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC-CEEEEEec
Confidence 4999999 8999999999998874 67776644
No 251
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=63.79 E-value=10 Score=37.47 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=25.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||||+|.|.+|..+++.+.... ++|+.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 37999999999999999998874 7877554
No 252
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=63.78 E-value=43 Score=32.61 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=52.1
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|-|+| .|.+|+.+++++.... .+++++.. +.+...++.+ +|- . .+ ++.+...+. + ..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~---s~~~~~~l~~----~Ga-~---------~v-i~~~~~~~~-~-~v 204 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAG---SDDKVAWLKE----LGF-D---------AV-FNYKTVSLE-E-AL 204 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-C---------EE-EeCCCccHH-H-HH
Confidence 788999 8999999999888774 77776654 2333333332 221 0 00 110000000 0 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
. .+...++|+|||++|. ...+.+..+++.+.+.+.+
T Consensus 205 ~--~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 205 K--EAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred H--HHCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 0 0112479999999986 4455566677666544433
No 253
>PRK06988 putative formyltransferase; Provisional
Probab=63.71 E-value=9.1 Score=38.78 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.2
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
|||||.+.|++.+|...|+.|.++. +++++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG-VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC-CCEEEE
Confidence 4479999999999999999998764 777766
No 254
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=63.65 E-value=6.9 Score=40.62 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=23.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
..+||+|||+||+++.+.+..-. +.++.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g-m~vI~~ 175 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMG-MHVIGY 175 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcC-ceEEee
Confidence 46999999999999999887763 666544
No 255
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=63.58 E-value=9.1 Score=41.31 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.5
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
.+|+|+|+|+||+.+++.+...+ ++|+.+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 48999999999999999998774 676544
No 256
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.45 E-value=29 Score=36.24 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=49.5
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
.||.|+|.|.+|+.+++.|.+++ .+|++..+. .+.+ .+ .+. . ++. . ..++
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~g~D~~---~~~~---~~----~~~------~--~~~---------~--~~~~ 53 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG-VYVIGVDKS---LEAL---QS----CPY------I--HER---------Y--LENA 53 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC-CEEEEEeCC---cccc---ch----hHH------H--hhh---------h--cCCc
Confidence 38999999999999999998875 566554431 1100 00 000 0 000 0 0012
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGak 204 (425)
+.++ .+.|+||-+.|.-........+++.|++
T Consensus 54 ~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 54 EEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred HHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 2221 2579999998887667778888888884
No 257
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=63.42 E-value=7.7 Score=38.81 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=26.9
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC--------CceEEEEcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD--------DVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~--------~~evvaInd 121 (425)
.++|+|+|+|-|||.+++.+.... .+.+|+|.+
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~ 43 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCD 43 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEec
Confidence 578999999999999998876431 377888877
No 258
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=63.18 E-value=30 Score=35.50 Aligned_cols=30 Identities=20% Similarity=0.624 Sum_probs=24.3
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.|.|.||...++++.... ..++++..
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~ 210 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFG-LRVTVISR 210 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcC-CeEEEEeC
Confidence 7899999999999999888774 67766643
No 259
>PLN02740 Alcohol dehydrogenase-like
Probab=63.03 E-value=17 Score=37.05 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaIn 120 (425)
+|.|+|.|.||...++++.... . .|+++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 7999999999999999888775 5 466664
No 260
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=62.97 E-value=9.6 Score=37.98 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=24.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||+|+|.|.+|..+.+.|.+++ ++|...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v~d 31 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQVFD 31 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEEEc
Confidence 38999999999999999998775 6765554
No 261
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=62.88 E-value=57 Score=32.32 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=50.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|.|.|.+|+.+++++...+ ..++.+.. +.+...++.+ +| + ...++.+.... ..
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~---~~~~~~~~~~----~g-------~----~~vi~~~~~~~-----~~ 227 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALG-AEVTAFSR---SPSKKEDALK----LG-------A----DEFIATKDPEA-----MK 227 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHH----cC-------C----cEEecCcchhh-----hh
Confidence 7888889999999988887764 57665543 2233223221 11 0 01111110000 01
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.+ ..++|+||+|+|.-...+.+-.+++.+...+.+
T Consensus 228 ~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 228 KA---AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred hc---cCCceEEEECCCCcchHHHHHHHhcCCCEEEEE
Confidence 11 247999999998754456666777655533334
No 262
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=62.81 E-value=9.1 Score=36.20 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=26.5
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.| +|.+|+.+++.|.++ ..+|+++..
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r 32 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLAR-GHEVRAAVR 32 (275)
T ss_pred eEEEEecccchHHHHHHHHHhC-CCEEEEEEe
Confidence 889999 999999999999998 477777765
No 263
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=62.74 E-value=7.3 Score=38.00 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.5
Q ss_pred eEEEEccChHHHHHHHHHHcCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~ 112 (425)
||.|+|.|-+|..+++.|...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~G 22 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG 22 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999997654
No 264
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=62.73 E-value=7.3 Score=38.07 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+||+|+|.|.+|..+++.|.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 49999999999999999998764
No 265
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=62.71 E-value=10 Score=38.17 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=24.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||+|+|.|.+|..+.+.|...+ .+|..++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r 35 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKG-VPVRLWAR 35 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 9999999999999999998764 67665554
No 266
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.45 E-value=15 Score=37.90 Aligned_cols=101 Identities=26% Similarity=0.239 Sum_probs=51.9
Q ss_pred CCCCceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEE-EEE
Q 014424 85 RSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL-IKV 163 (425)
Q Consensus 85 ~~~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~-I~v 163 (425)
+..+--||.|.|.|.||-..+..+..-.--+|| |.|+. .+-+ -+.+ +|-.++-. ....+. +..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VV-i~d~~--~~Rl-e~Ak------~~Ga~~~~------~~~~~~~~~~ 229 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVV-ITDLV--ANRL-ELAK------KFGATVTD------PSSHKSSPQE 229 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEE-EeecC--HHHH-HHHH------HhCCeEEe------eccccccHHH
Confidence 334445999999999998777666554433544 45542 2222 1221 11111110 000000 000
Q ss_pred EecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCC
Q 014424 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (425)
Q Consensus 164 ~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGa 203 (425)
+.+. .+.. .++...|++|||||...+.+.+-..++.|-
T Consensus 230 ~~~~-v~~~-~g~~~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 230 LAEL-VEKA-LGKKQPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred HHHH-HHhh-ccccCCCeEEEccCchHHHHHHHHHhccCC
Confidence 0000 0111 122358999999999999988877777554
No 267
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=62.26 E-value=36 Score=33.74 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=53.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|.|.|.+|+.+++++...+ .+++.+.. +.+.+..+-++ |- ...++.+...+.. ..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~---~~~~~~~~~~~----g~-----------~~~i~~~~~~~~~--~~- 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG-FRTVAISR---GSDKADLARKL----GA-----------HHYIDTSKEDVAE--AL- 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEeC---ChHHHHHHHHc----CC-----------cEEecCCCccHHH--HH-
Confidence 7899999999999999888774 67766654 23333333221 10 1112211100000 00
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEe
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVIS 209 (425)
..| .++|++++++|.....+.+..+++.+...+.+.
T Consensus 224 -~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 224 -QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred -Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 112 268999999876556666667776665444443
No 268
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=62.22 E-value=53 Score=31.27 Aligned_cols=89 Identities=25% Similarity=0.358 Sum_probs=49.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.+|+.+++++.... .. ++++.. +.+....+-+ +|... .+ ++.. .
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~---~~~~~~~~~~----~g~~~---------~~-~~~~---------~ 152 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAG-AREVVGVDP---DAARRELAEA----LGPAD---------PV-AADT---------A 152 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEECC---CHHHHHHHHH----cCCCc---------cc-cccc---------h
Confidence 7889999999999998888764 66 766643 2333322221 12100 00 1000 0
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.. +...++|++|+|+|.....+.+..+++.+.+.+.+
T Consensus 153 ~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 153 DE--IGGRGADVVIEASGSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred hh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEE
Confidence 00 11247999999988654555556666655533333
No 269
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=61.95 E-value=88 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.021 Sum_probs=24.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-||-|+|-|.+|.+.++.|.+.+ .+|+-|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 38999999999999999998764 5655553
No 270
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.86 E-value=39 Score=38.20 Aligned_cols=152 Identities=19% Similarity=0.193 Sum_probs=75.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhh-------cccccCCccceEEEeCCCeEEECCEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK-------YDSTHGVFKGTINVVDDSTLEINGKLIK 162 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~-------yDS~~g~f~~~v~~~~~~~l~i~Gk~I~ 162 (425)
.||+|+|.|.+|+.+...+..+..++|+-+ |+ +.+.+....+ ..-..|++.... . ... . ..|+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~-d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~--~--~~i~ 379 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIK-DI--NPQGINHALKYSWDLLDKKVKRRHLKPSE-R--DKQ--M--ALIS 379 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEE-eC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHH-H--HHH--H--hcEE
Confidence 389999999999999988773334776644 43 3443322211 111112221110 0 000 0 1233
Q ss_pred EEecCCCCCCCCcccCcCEEEEccCcccCH-----HHHHHHHhCCCCEEEEeCCCC----------CCCcEEeec---Cc
Q 014424 163 VFSKRDPAEIPWGDYGVDYVVESSGVFTTI-----AKASAHMKGGAKKVVISAPSA----------DAPMFVVGV---NE 224 (425)
Q Consensus 163 v~~~~dp~~i~W~~~gvDiV~esTG~f~s~-----e~a~~hl~aGakkVVISaps~----------Dvp~vV~gV---N~ 224 (425)
.. .+.+.+ .++|+|+||.-.-... ....+++..+ .++.||.|. .-|.=+.|+ |+
T Consensus 380 ~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~--~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P 451 (708)
T PRK11154 380 GT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPH--TIFASNTSSLPIGQIAAAAARPEQVIGLHYFSP 451 (708)
T ss_pred Ee--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCC--cEEEECCCCCCHHHHHHhcCcccceEEEecCCc
Confidence 33 123333 4899999996332221 1222333333 488888771 233223332 33
Q ss_pred cccCCCCcEEecCCchhhhHHhHHHHHHhhcCeeEE
Q 014424 225 KTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEG 260 (425)
Q Consensus 225 ~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~ 260 (425)
-.+-+--.||..+.+....+.-+...+ +..|..-+
T Consensus 452 ~~~~~lVEvv~g~~Ts~~~~~~~~~~~-~~~gk~pv 486 (708)
T PRK11154 452 VEKMPLVEVIPHAKTSAETIATTVALA-KKQGKTPI 486 (708)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHH-HHcCCceE
Confidence 333222357777777777666666555 44565544
No 271
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=61.82 E-value=20 Score=38.05 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=25.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||-|+|.|-+|+.+++.|.+++--.|.-.|.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 47999999999999999999986344444555
No 272
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=61.54 E-value=70 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.5
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaIn 120 (425)
+|.|+|.|.+|+..++++...+ . .++++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG-ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 7899999999999999888774 6 565554
No 273
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.44 E-value=11 Score=37.81 Aligned_cols=30 Identities=33% Similarity=0.244 Sum_probs=25.3
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||+|+|.|.+|..+...|..++ .+|+.++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G-~~V~v~d~ 33 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAG-HEVRLWDA 33 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCC-CeeEEEeC
Confidence 8999999999999999998874 67765543
No 274
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=61.34 E-value=36 Score=34.34 Aligned_cols=85 Identities=21% Similarity=0.126 Sum_probs=54.8
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKR 167 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~ 167 (425)
-||-|.| +|.+|+.+++.|.+.+ + .+..||-. +. |+. +.| ++.+ +
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVnp~----~~------~~~------------------v~G--~~~y--~ 55 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVTPG----KG------GTT------------------VLG--LPVF--N 55 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCC-CCEEEEECCC----CC------CCe------------------EeC--eecc--C
Confidence 4899999 9999999999998764 4 44456531 00 111 111 1122 1
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
+.+++|=. .++|+++-++......+..+...+.|+|.+||
T Consensus 56 sv~dlp~~-~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 56 TVAEAVEA-TGANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CHHHHhhc-cCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 33344310 02899999998887777788888899998766
No 275
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.93 E-value=13 Score=40.31 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHH
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ 129 (425)
++=+|-|.|+|++||.+.|.|.+++ .+++.|.. |++..
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~---d~~~~ 453 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAG-IPLVVIET---SRTRV 453 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCC-CCEEEEEC---CHHHH
Confidence 4447899999999999999998874 78887764 45543
No 276
>PRK06444 prephenate dehydrogenase; Provisional
Probab=60.80 E-value=9.7 Score=36.22 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.6
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCce
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVD 115 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~e 115 (425)
|||+|+| .|+.||.+.+.+.+. .++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~ 26 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLG 26 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-CCE
Confidence 3999999 899999999988765 354
No 277
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=60.64 E-value=19 Score=38.12 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=27.1
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||-|-| +|.||+.+++.|.+++ .+|+++..
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr 152 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDN 152 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4999999 9999999999999884 78888854
No 278
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=60.58 E-value=25 Score=35.78 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=23.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaIn 120 (425)
+|.|.|.|.||...++++.... . +|+++.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~ 217 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAK-ASRIIAID 217 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 7999999999999998887764 5 566664
No 279
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=60.42 E-value=12 Score=36.67 Aligned_cols=31 Identities=35% Similarity=0.347 Sum_probs=24.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|||+|+|.|.+|..+...|.+.+ .+|..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 38999999999999999888764 56555543
No 280
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=60.30 E-value=11 Score=37.62 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
||+|+|.|++|..+.+.|.+.. +++...
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~ 29 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVT 29 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEE
Confidence 8999999999999999998875 666534
No 281
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.19 E-value=13 Score=36.61 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=24.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||+|+|.|.+|..+...+..+. ++|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 58999999999999999988774 6766553
No 282
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=60.15 E-value=53 Score=33.40 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEcc-ChHHHHHHHHHHcCCCc-eEE
Q 014424 91 KVGINGF-GRIGRLVLRVAAFRDDV-DVV 117 (425)
Q Consensus 91 kVaInGf-GrIGr~vlr~l~~~~~~-evv 117 (425)
||+|+|. |.||..++-.|..++-. |++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elv 29 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELS 29 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEE
Confidence 7999996 99999998888776532 454
No 283
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=60.14 E-value=15 Score=37.01 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.0
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||-|.| +|.||+.+++.|.+++ .+|+++.+
T Consensus 12 ~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 12 TYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 899999 9999999999999885 68877644
No 284
>PLN02240 UDP-glucose 4-epimerase
Probab=60.11 E-value=13 Score=36.96 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.1
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
..||-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 46899999 9999999999998875 68887753
No 285
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=59.97 E-value=5 Score=39.16 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..||.|+|.|-+|..+++.|...+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC
Confidence 459999999999999999998654
No 286
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=59.87 E-value=12 Score=40.36 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=24.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
+||||+|.|.+|..++..+..++ ++|...
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G-~~V~v~ 33 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG-IDVAVF 33 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEE
Confidence 48999999999999999988874 776644
No 287
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=59.87 E-value=44 Score=29.99 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=46.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
||+|.|.|..|..+...|.+++ .+|. +-. .+.+.+..+-+... ..+|-..++.. - .+.+. .|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~-l~~--~~~~~~~~i~~~~~-n~~~~~~~~l~------~---~i~~t--~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVT-LWG--RDEEQIEEINETRQ-NPKYLPGIKLP------E---NIKAT--TDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEE-EET--SCHHHHHHHHHHTS-ETTTSTTSBEE------T---TEEEE--SSHH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEE-EEe--ccHHHHHHHHHhCC-CCCCCCCcccC------c---ccccc--cCHH
Confidence 7999999999999999998885 4543 333 24555544443221 11222112221 1 12232 2433
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHH
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKAS 196 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~ 196 (425)
+. -.++|+++-++..+.-++.++
T Consensus 65 ~a---~~~ad~IiiavPs~~~~~~~~ 87 (157)
T PF01210_consen 65 EA---LEDADIIIIAVPSQAHREVLE 87 (157)
T ss_dssp HH---HTT-SEEEE-S-GGGHHHHHH
T ss_pred HH---hCcccEEEecccHHHHHHHHH
Confidence 21 137899999987776554443
No 288
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=59.80 E-value=3.9 Score=38.77 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.6
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
...||+|+|.|.+|..++..|...+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~G 44 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAG 44 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC
Confidence 3469999999999999999988764
No 289
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=59.62 E-value=25 Score=34.71 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.4
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|-|-| +|.||+.+++.|.+++ .+|+++.+
T Consensus 7 ~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 7 LVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 899999 9999999999999885 67776544
No 290
>PRK10083 putative oxidoreductase; Provisional
Probab=59.37 E-value=44 Score=32.92 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=49.4
Q ss_pred eEEEEccChHHHHHHHHHHc-CCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAF-RDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~-~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.+|+.+++++.. .+ ..++.+.+. +.+.+..+.++ |. . ..++-+.-.+. + ..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~--~~~~~~~~~~~----Ga-~----------~~i~~~~~~~~-~-~~ 222 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYN-VKAVIVADR--IDERLALAKES----GA-D----------WVINNAQEPLG-E-AL 222 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcC--CHHHHHHHHHh----CC-c----------EEecCccccHH-H-HH
Confidence 78999999999999888764 34 543333332 34444333222 21 0 01111000000 0 01
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
... ..++|+||||+|.-.....+..+++.|.+.+.+
T Consensus 223 ~~~---g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 223 EEK---GIKPTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred hcC---CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 111 124689999998644455566777766654444
No 291
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=58.91 E-value=13 Score=40.05 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=28.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCC-CceEEEEcCCCCChHHH
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD-DVDVVAVNDPFIDAKYM 129 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~-~~evvaInd~~~~~~~~ 129 (425)
|||+|+|.|++|-.+.-+|.+++ .++|+++.- +.+.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~---~~~~v 39 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDI---SVPRI 39 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEC---CHHHH
Confidence 49999999999998887777653 578887742 45544
No 292
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=58.80 E-value=6.7 Score=38.27 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..||.|+|.|-+|..+++.|..-+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 459999999999999999998654
No 293
>PLN02494 adenosylhomocysteinase
Probab=58.16 E-value=13 Score=40.16 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=25.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.+|+|.|+|.||+.+++.+.... +.|+.++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999998774 6776654
No 294
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.07 E-value=19 Score=35.49 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=27.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHh
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayl 132 (425)
||+|+|.|.+|+.+...|..+. ++|..++- +++.+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d~---~~~~~~~~ 40 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVDI---KQEQLESA 40 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEeC---CHHHHHHH
Confidence 8999999999999999988774 67665532 45544443
No 295
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=58.07 E-value=14 Score=36.61 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=24.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||+|+|.|.+|+.+...+..+. ++|+.++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G-~~V~l~d 33 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTG-YDVTIVD 33 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcC-CeEEEEe
Confidence 7999999999999999998874 6776554
No 296
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=57.92 E-value=60 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=23.8
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaInd 121 (425)
+|.|.|.|.+|..+++++...+ . .++++..
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~ 217 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDI 217 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 8899999999999998887774 6 4665543
No 297
>PRK05866 short chain dehydrogenase; Provisional
Probab=57.74 E-value=23 Score=34.89 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=33.7
Q ss_pred ccCcccccccCCccccCCCCCC-ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 67 IQPIRATATEIPPTIQKSRSDG-NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~m-~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+.|.+.+.+..+..... ...| ..+|-|.| .|-||+.+++.|.+++ .+|+.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R 72 (293)
T PRK05866 18 MRPPISPQLLINRPPRQ-PVDLTGKRILLTGASSGIGEAAAEQFARRG-ATVVAVAR 72 (293)
T ss_pred cCCCCCchhhcCCCCCC-CcCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 34445554444442222 1222 24688999 8999999999998874 67776643
No 298
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=57.51 E-value=10 Score=40.46 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=18.8
Q ss_pred eEEEEccChHHHHHHHHHHcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~ 111 (425)
||.|+|.|-+|.++++.|...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~ 21 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999998755
No 299
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=57.49 E-value=12 Score=38.41 Aligned_cols=31 Identities=32% Similarity=0.270 Sum_probs=25.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|||+|+|.+|+.+++.|...+ ++|+....
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 48999999999999999998774 77764433
No 300
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=57.28 E-value=12 Score=39.02 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=29.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhh
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFK 134 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~ 134 (425)
||+|+|.|++|..+..++. . .++|++++- +.+.+..+.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~---d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDI---LPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEEC---CHHHHHHHHc
Confidence 8999999999999996665 4 478887754 5666555543
No 301
>PRK07680 late competence protein ComER; Validated
Probab=57.15 E-value=15 Score=36.00 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.1
Q ss_pred eEEEEccChHHHHHHHHHHcCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~ 112 (425)
||+|+|.|.+|+.+++.|.+.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCC
Confidence 8999999999999999988764
No 302
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=57.13 E-value=81 Score=29.93 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=23.3
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||.|+|-|.+|..-++.|.+.+ -.|+-|.
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs 39 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAG-AQLRVIA 39 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCC-CEEEEEc
Confidence 8999999999999999998875 4544343
No 303
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=56.64 E-value=14 Score=36.91 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=23.2
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.|||+|+|.|.||..+.-.|.+.+ .+|..+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~ 32 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLIL 32 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEEE
Confidence 459999999999998887776653 4554454
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.28 E-value=98 Score=30.11 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=52.8
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|-|+|.|.+|+.+++++...+ +.++++.. +.+...++-++ |. . . .++.+.. ...+. ..
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G-~~V~~~~~---s~~~~~~~~~~----g~-~---------~-~~~~~~~-~~~~~-~~ 226 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG-AAVIAVDI---KEEKLELAKEL----GA-D---------E-VLNSLDD-SPKDK-KA 226 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CEEEEEcC---CHHHHHHHHHh----CC-C---------E-EEcCCCc-CHHHH-HH
Confidence 7888899999999999888774 77776644 33333333221 11 0 0 0110000 00000 00
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
..+ ..++|+|++|.|.....+.+..+++.|.+.+.+
T Consensus 227 ~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred Hhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 011 247999999998655566677888777654444
No 305
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=56.19 E-value=15 Score=38.94 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=24.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-+|+|.|+|.||+.+++.+.... .+|+.+.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc-CEEEEEe
Confidence 48999999999999999998764 7766553
No 306
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=56.00 E-value=67 Score=31.44 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=24.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.|.|.+|+.+++++.... +++..+..
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~ 194 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMG-FETVAITR 194 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 7899998889999998888764 67766654
No 307
>PLN02206 UDP-glucuronate decarboxylase
Probab=55.74 E-value=14 Score=39.15 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=27.0
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEeC
Confidence 5999999 9999999999999884 68887754
No 308
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.71 E-value=59 Score=34.65 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||+|.|+|+-|+..+|.|.++. .+++ +.|
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v~-~~d 38 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQA-LTL 38 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEEE-EEc
Confidence 48999999999999999999874 5544 455
No 309
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.69 E-value=18 Score=35.99 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||+|+|.|.+|..+...|...+ ++|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG-LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 48999999999999999988764 6776654
No 310
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=54.96 E-value=31 Score=33.59 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.2
Q ss_pred EEEEcc-ChHHHHHHHHHHcCC
Q 014424 92 VGINGF-GRIGRLVLRVAAFRD 112 (425)
Q Consensus 92 VaInGf-GrIGr~vlr~l~~~~ 112 (425)
|+|+|. |.+|..++..|...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689997 999999999887665
No 311
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=54.74 E-value=16 Score=36.81 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=27.1
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4899999 9999999999999885 68888854
No 312
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=54.73 E-value=71 Score=31.45 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaI 119 (425)
+|.|+|.|.+|+.+++++..+. + .++++
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~ 198 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLG-AARVFAV 198 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CceEEEE
Confidence 7899999999999999988874 5 67767
No 313
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=54.58 E-value=71 Score=32.25 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=24.1
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+| .|.||...++++.... .+++++..
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~ 191 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHG-CYVVGSAG 191 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEcC
Confidence 799999 5999999999888774 67766643
No 314
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=54.55 E-value=27 Score=32.20 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.3
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
..+|-|.| .|.||+.+++.|.+++ .+|+.+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r 37 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYDS 37 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 35899999 8999999999999885 56666654
No 315
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=54.40 E-value=76 Score=31.44 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=24.2
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+| .|.+|+.+++++...+ .+++++..
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~ 184 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG-CYVVGSAG 184 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 789999 6999999999888774 67766543
No 316
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=54.32 E-value=23 Score=36.21 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.9
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~ 112 (425)
+||+|+|. |.||..++-.|..++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCC
Confidence 59999995 999999988887664
No 317
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=54.23 E-value=27 Score=34.91 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=28.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCC---ceEEEEcCCCCChHHHhHh
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDD---VDVVAVNDPFIDAKYMAYM 132 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~---~evvaInd~~~~~~~~ayl 132 (425)
+||+++|+|.+|+.+++-|.+++. .+|. |.++ +.+...++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~--~~e~~~~l 44 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNR--SEEKRAAL 44 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCC--CHHHHHHH
Confidence 599999999999999999998752 3444 5554 45544333
No 318
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=54.22 E-value=14 Score=39.01 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhH
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAY 131 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ay 131 (425)
|||||+|.|++|.-+...+.+ . ++|++++- +.+.+..
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D~---~~~~ve~ 43 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-S-RQVVGFDV---NKKRILE 43 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-C-CEEEEEeC---CHHHHHH
Confidence 499999999999999988665 3 88887754 4554433
No 319
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=54.10 E-value=75 Score=31.22 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=51.1
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+| .|.||+.+++++.... .+++++.. +.+....+.+ +|- ...++.+......+ ..
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~---s~~~~~~~~~----lGa-----------~~vi~~~~~~~~~~-~~ 200 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAG---SDEKVAYLKK----LGF-----------DVAFNYKTVKSLEE-TL 200 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC-----------CEEEeccccccHHH-HH
Confidence 789999 7999999999887764 67766644 2344333322 111 01111100000000 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.... ..++|+||||+|.-. .+.+-..++.|.+.+.+
T Consensus 201 ~~~~--~~gvdvv~d~~G~~~-~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 201 KKAS--PDGYDCYFDNVGGEF-SNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HHhC--CCCeEEEEECCCHHH-HHHHHHHhCcCcEEEEe
Confidence 0111 237999999998643 35555667666644444
No 320
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.98 E-value=84 Score=33.50 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=24.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|.|+|..|+.+++.|...+ .+|. +.|
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G-~~V~-~~D 45 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELG-CDVV-VAD 45 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEEE-EEC
Confidence 7999999999999999998875 5554 445
No 321
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=53.96 E-value=1e+02 Score=30.93 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd 121 (425)
+|.|+|.|.+|+.+++++...+ +. ++.+..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 6889999999999999988774 66 655543
No 322
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=53.91 E-value=38 Score=33.91 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.8
Q ss_pred EEEEccChHHHHHHHHHHcCCC
Q 014424 92 VGINGFGRIGRLVLRVAAFRDD 113 (425)
Q Consensus 92 VaInGfGrIGr~vlr~l~~~~~ 113 (425)
|+|+|.|.||..++-.|...+-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~ 22 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGL 22 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCC
Confidence 5899999999999988877653
No 323
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=53.90 E-value=36 Score=36.21 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=53.0
Q ss_pred eeEEEEcc----ChHHHHHHHHHHcCCCc--eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEE
Q 014424 90 TKVGINGF----GRIGRLVLRVAAFRDDV--DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKV 163 (425)
Q Consensus 90 ikVaInGf----GrIGr~vlr~l~~~~~~--evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v 163 (425)
-+|+|+|. |.+|+.+++.|.+++ | +|..||-. |+.++|. ++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~------------~~~i~G~--------------------~~ 54 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK------------AGEILGV--------------------KA 54 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC------------CCccCCc--------------------cc
Confidence 47999994 889999999998875 4 67667641 1222211 11
Q ss_pred EecCCCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 164 FSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 164 ~~~~dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
+ .+.+++| ..+|+++-++..-...+..+...+.|+|.++|
T Consensus 55 ~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 55 Y--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred c--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1223333 35788888887777777777777788887765
No 324
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=53.87 E-value=1.1e+02 Score=31.06 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=23.5
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaIn 120 (425)
+|.|+|.|.||...++++...+ . .++++.
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~ 218 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAG-ASRIIGID 218 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 7999999999999999888775 5 466554
No 325
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.70 E-value=60 Score=33.88 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=24.4
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
.+|.|.|-|.+|..+++.|.+++ .+|..+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~ 34 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG-AKVILT 34 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 48999999999999999999885 565544
No 326
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=53.35 E-value=17 Score=37.02 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=24.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||||+|+|.+|+.+++.|.+.. ++++...+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG-LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC-CeEEEEEC
Confidence 38999999999999999998774 66654344
No 327
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=53.31 E-value=1.1e+02 Score=30.02 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=50.4
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|-|.+|+.+++++... ... ++++.. +.+...++.+|. . . ..++.+.....+.. -
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~-g~~~v~~~~~---s~~~~~~~~~~g----~-~----------~~~~~~~~~~~~~i-~ 227 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKAS-GARKVIVSDL---NEFRLEFAKKLG----A-D----------YTIDAAEEDLVEKV-R 227 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEECC---CHHHHHHHHHhC----C-c----------EEecCCccCHHHHH-H
Confidence 789999999999999987766 466 555533 344443333322 1 0 01111100000000 0
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
...+ ..++|+||+|+|.......+..+++.+.+.+.+
T Consensus 228 ~~~~--~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 228 ELTD--GRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HHhC--CcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 0011 236999999998543444555677666544433
No 328
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=53.29 E-value=44 Score=32.19 Aligned_cols=96 Identities=23% Similarity=0.298 Sum_probs=51.3
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.+|+.+++++... .++ ++.+.. +.+....+-++ |- . -.++.+.-...+ ..
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~-g~~~v~~~~~---~~~~~~~~~~~----g~-~----------~~~~~~~~~~~~--~l 190 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAA-GARRVIAIDR---RPARLALAREL----GA-T----------EVVTDDSEAIVE--RV 190 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEECC---CHHHHHHHHHh----CC-c----------eEecCCCcCHHH--HH
Confidence 789999999999999988877 477 666654 23333222211 10 0 011100000000 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.++ ....++|++|+|.|.....+.+..+++.+.+.+.+
T Consensus 191 ~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 191 REL-TGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred HHH-cCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 000 01247999999997655556666777666533333
No 329
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=53.07 E-value=22 Score=32.28 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=25.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||.|.|.|++|+..++++...+ .+++.+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred eEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 59999999999999999999886 78776655
No 330
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=53.00 E-value=18 Score=35.76 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.6
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|.| +|.||+.+++.|.+++ .+|+.+..
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~ 32 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVVILDN 32 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC-CeEEEEec
Confidence 899999 9999999999998874 68777743
No 331
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.88 E-value=84 Score=33.25 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=24.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||+|.|+|+.|+.+++.|..++ .+|. +.|
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V~-~~D 44 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKVT-AFD 44 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEEE-EEC
Confidence 38999999999999999999885 5654 455
No 332
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=52.77 E-value=7.5 Score=39.91 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.0
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
....||.|+|.|.+|..+++.|...+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aG 47 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAG 47 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC
Confidence 34459999999999999999998764
No 333
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=52.45 E-value=63 Score=36.93 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=24.1
Q ss_pred eEEEEccChHHHHH-HHHHHcCCCceEEEEcCC
Q 014424 91 KVGINGFGRIGRLV-LRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 91 kVaInGfGrIGr~v-lr~l~~~~~~evvaInd~ 122 (425)
+|.|+|.|..|... +|+|.+++ .+|. +.|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G-~~V~-~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG-YSVS-GSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC-CeEE-EECC
Confidence 59999999999997 88888875 6654 5563
No 334
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.41 E-value=17 Score=38.94 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCcEEeecCccccCCCCcEEecCCchhhhHHhHHHHHHhhcCeeEEEEEeeeecccc
Q 014424 193 AKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTAT 271 (425)
Q Consensus 193 e~a~~hl~aGakkVVISaps~Dvp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~d~fGI~~~~~TTvhAvt~~ 271 (425)
+.++...+.|+|-++++ |.|-..|-.+..= . ..-|+-+|+-|.+.-||.++.++++|+.--+
T Consensus 180 ~ev~~Lv~~G~kEI~L~-----------gqdv~aYG~D~~~----~--~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~ 241 (437)
T COG0621 180 KEVKRLVAQGVKEIVLT-----------GQDVNAYGKDLGG----G--KPNLADLLRELSKIPGIERIRFGSSHPLEFT 241 (437)
T ss_pred HHHHHHHHCCCeEEEEE-----------EEehhhccccCCC----C--ccCHHHHHHHHhcCCCceEEEEecCCchhcC
Confidence 46677788999998884 4555555432110 1 3458889999999889999999999975443
No 335
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.25 E-value=18 Score=35.51 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=23.5
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
|||+|+|.|.+|..+...|.+.+ .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 38999999999999999988763 4554443
No 336
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=52.04 E-value=1.1e+02 Score=29.89 Aligned_cols=94 Identities=23% Similarity=0.317 Sum_probs=50.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.+|+.+++++...+ +. ++.+.. +.+....+-++ |. . ..++.+..... .+
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~---~~~~~~~~~~~----g~---~--------~~~~~~~~~~~-~~-- 219 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEP---NEEKLELAKKL----GA---T--------ETVDPSREDPE-AQ-- 219 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHHh----CC---e--------EEecCCCCCHH-HH--
Confidence 7899999999999999888774 55 444433 34443333221 10 0 11111000000 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
... ...++|++|+|+|.....+.+..+++.+.+.+.+
T Consensus 220 ~~~--~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 220 KED--NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred HHh--cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 001 1247999999998544555566777766544444
No 337
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=51.97 E-value=17 Score=35.05 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=25.3
Q ss_pred eEEEEc-cChHHHHHHHHHHcCC-CceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRD-DVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~-~~evvaInd 121 (425)
||.|.| +|.||+.+++.|.+++ +.+|+++..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 578999 9999999999998764 478877753
No 338
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=51.82 E-value=19 Score=35.59 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.2
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||-|.| .|.||+.+++.|.+++ +++++..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~ 31 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDV 31 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEecc
Confidence 899999 8999999999998875 5665543
No 339
>PRK06545 prephenate dehydrogenase; Validated
Probab=51.70 E-value=19 Score=37.06 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=22.4
Q ss_pred eEEEEccChHHHHHHHHHHcCC-CceEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD-DVDVVA 118 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~-~~evva 118 (425)
||+|+|+|.||..+.+.|..+. ++.+..
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~ 30 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIG 30 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEE
Confidence 7999999999999999998764 344433
No 340
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=51.69 E-value=1.1e+02 Score=30.67 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.3
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaInd 121 (425)
+|.|.|.|.+|+.+++++...+ . .++++..
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~ 210 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDG 210 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 7899999999999999888764 6 6766643
No 341
>PRK06153 hypothetical protein; Provisional
Probab=51.46 E-value=7.6 Score=40.86 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=23.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
.||+|+|.|-+|-.++..|..-+=-+|+-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF 206 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence 599999999999999999987653344444
No 342
>PRK09291 short chain dehydrogenase; Provisional
Probab=51.38 E-value=24 Score=33.21 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.6
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|+.+|-|.| +|.||+.+++.|.+++ ..++++..
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 334789999 9999999999999875 67776654
No 343
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=51.15 E-value=41 Score=33.49 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=23.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaIn 120 (425)
+|.|+|.|.+|...++++.... .+ ++++.
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~ 192 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALG-AKSVTAID 192 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 8999999999999998887774 65 44443
No 344
>PRK06046 alanine dehydrogenase; Validated
Probab=50.93 E-value=21 Score=36.17 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=29.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
.+|+|+|+|..|+..++.+...+.++.+.|-++
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 489999999999999999986667999999885
No 345
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=50.71 E-value=23 Score=36.16 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=24.0
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCCC------ceEEEE
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRDD------VDVVAV 119 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~~------~evvaI 119 (425)
+||+|.|. |.||..++..|..++- .+|+.+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 59999995 9999999999987542 266665
No 346
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=50.59 E-value=20 Score=34.42 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=24.8
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCC
Confidence 578999 8999999999998874 67776644
No 347
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=50.55 E-value=1.3e+02 Score=27.06 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=53.3
Q ss_pred eEEEE-c-cChHHHHHHHHHHcC-CC-ceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec
Q 014424 91 KVGIN-G-FGRIGRLVLRVAAFR-DD-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK 166 (425)
Q Consensus 91 kVaIn-G-fGrIGr~vlr~l~~~-~~-~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~ 166 (425)
||+|+ | =|.||+.+++.|.+. |+ ++|.|+..- .--...|+|-.-.. -+..++.+++|
T Consensus 1 ~I~VIDGQGGGiG~~iv~~lr~~~~~~~eI~AlGTN---a~AT~~MlKaGA~~-------gATGENaIv~n--------- 61 (131)
T PF12953_consen 1 RIAVIDGQGGGIGKQIVEKLRKELPEEVEIIALGTN---AIATSAMLKAGANE-------GATGENAIVVN--------- 61 (131)
T ss_pred CEEEEeCCCChhHHHHHHHHHHhCCCCcEEEEEehh---HHHHHHHHHcCCCC-------cccccchheec---------
Confidence 45544 5 699999999998764 65 999998642 11223566522111 11111223332
Q ss_pred CCCCCCCCcccCcCEEEEccCcc--------cCHHHHHHHHhCCCCEEEE
Q 014424 167 RDPAEIPWGDYGVDYVVESSGVF--------TTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 167 ~dp~~i~W~~~gvDiV~esTG~f--------~s~e~a~~hl~aGakkVVI 208 (425)
...+|+++-..|.- .+..-|.+..+..|+|++|
T Consensus 62 ---------~~~aDiIvGpigIv~a~smlGEiTp~mA~AI~~S~A~KiLi 102 (131)
T PF12953_consen 62 ---------ARKADIIVGPIGIVIANSMLGEITPAMAEAIAQSPAKKILI 102 (131)
T ss_pred ---------cCCCCEEECcHHHhccCcccccccHHHHHHHhcCCCCEEEE
Confidence 12467766554332 3667778888899999988
No 348
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=50.43 E-value=20 Score=36.15 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
|||+|+|.|.||..++..|..++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 38999999999999999888775
No 349
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=50.12 E-value=20 Score=39.79 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=27.6
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+||-|.| +|.||+.+++.|.++...+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 4899999 9999999999998764578888865
No 350
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=50.04 E-value=64 Score=31.84 Aligned_cols=95 Identities=29% Similarity=0.354 Sum_probs=51.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.+|+.+++++...+ .. ++.+.. +.+..-++.++ |. ...++.+... .. +.
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~---~~~~~~~l~~~----g~-----------~~~~~~~~~~-~~--~~ 219 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILG-AKRVIAVDI---DDEKLAVAREL----GA-----------DDTINPKEED-VE--KV 219 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC---CHHHHHHHHHc----CC-----------CEEecCcccc-HH--HH
Confidence 7899999999999999887764 65 665644 23333233221 11 0111111000 00 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
..+. ...++|++|+|+|.....+.+..+++.+.+.+.+
T Consensus 220 ~~~~-~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 220 RELT-EGRGADLVIEAAGSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred HHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0000 1135999999998655556666777766543333
No 351
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=50.02 E-value=26 Score=30.56 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=23.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|+|.|.|.+|+.+++.|...+ ...+.+-+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEc
Confidence 38999999999999999998764 33333444
No 352
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=49.96 E-value=31 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.0
Q ss_pred eeEEEEccChHHHHHHHHHHcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~ 111 (425)
.+++|.|+|.+|+.+++.|.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999999876
No 353
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=49.88 E-value=8.4 Score=39.74 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.3
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+..||.|+|.|-+|..+++.|...+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC
Confidence 3469999999999999999987653
No 354
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=49.86 E-value=52 Score=32.49 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=51.0
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
+|-|+| .|.+|+..++++.... . +++++.. +.+...++.+ .+|- + . .++.+...+. ..
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~---s~~~~~~~~~---~lGa---~-------~-vi~~~~~~~~--~~ 216 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLG-CSRVVGICG---SDEKCQLLKS---ELGF---D-------A-AINYKTDNVA--ER 216 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcC---CHHHHHHHHH---hcCC---c-------E-EEECCCCCHH--HH
Confidence 789999 6999999998887764 5 6776654 2333322221 0111 0 0 1110000000 00
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
..++. ..++|+||||+|... .+.+-.+++.|.+.+.+
T Consensus 217 i~~~~--~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 217 LRELC--PEGVDVYFDNVGGEI-SDTVISQMNENSHIILC 253 (345)
T ss_pred HHHHC--CCCceEEEECCCcHH-HHHHHHHhccCCEEEEE
Confidence 01111 147999999998653 35566677766654444
No 355
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=49.85 E-value=79 Score=33.37 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.2
Q ss_pred eEEEEccChHHHH-HHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRL-VLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~-vlr~l~~~~~~evvaInd 121 (425)
||.|+|.|..|.. ++|.|.+++ .+|. +.|
T Consensus 9 ~v~viG~G~sG~s~~a~~L~~~G-~~V~-~~D 38 (461)
T PRK00421 9 RIHFVGIGGIGMSGLAEVLLNLG-YKVS-GSD 38 (461)
T ss_pred EEEEEEEchhhHHHHHHHHHhCC-CeEE-EEC
Confidence 8999999999999 799998885 6654 455
No 356
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=49.59 E-value=77 Score=32.06 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=20.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
|||.|.|.|.||..+.-.|...+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 49999999999999988887765
No 357
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=49.53 E-value=85 Score=30.35 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=47.7
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+| .|.+|+.+++++.... .+++.+.. +.+...++.++.. ...++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~~g~---------------~~~~~~~~~~----~~~ 205 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG-YTVVALTG---KEEQADYLKSLGA---------------SEVLDREDLL----DES 205 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHhcCC---------------cEEEcchhHH----HHH
Confidence 689999 6999999998887764 66554433 2333334432210 0111111000 000
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGa 203 (425)
.. .+...++|+|++|+|. ...+.+..++..+.
T Consensus 206 ~~-~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g 237 (325)
T cd05280 206 KK-PLLKARWAGAIDTVGG-DVLANLLKQTKYGG 237 (325)
T ss_pred HH-HhcCCCccEEEECCch-HHHHHHHHhhcCCC
Confidence 00 0122468999999986 35555666665544
No 358
>PRK08655 prephenate dehydrogenase; Provisional
Probab=49.50 E-value=21 Score=37.90 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=24.0
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||+|+| +|.+|+.+.+.|.+++ .+|..++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 899998 9999999999998764 5665554
No 359
>PLN02827 Alcohol dehydrogenase-like
Probab=49.39 E-value=51 Score=33.73 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=23.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCce-EEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~e-vvaIn 120 (425)
-+|.|.|.|.||..+++++.... .. ++++.
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~ 225 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVD 225 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 37899999999999999887774 54 55543
No 360
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=49.39 E-value=25 Score=32.35 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.1
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 92 VaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|-|.| +|.||+.+++.|.++. .+++.+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~ 30 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSR 30 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEES
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccc
Confidence 57999 9999999999999885 56666665
No 361
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=49.39 E-value=8.4 Score=43.09 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
.||.|+|.|-+|-.++|.|..-+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC
Confidence 68999999999999999998764
No 362
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=49.35 E-value=20 Score=34.90 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=25.9
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 799999 8999999999999875 67777754
No 363
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=49.14 E-value=83 Score=32.74 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|+|.|.+|+.++|+|.++. .+|. +.|
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V~-~sD 29 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEVT-VTD 29 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEEE-EEe
Confidence 5789999999999999999885 5654 555
No 364
>PLN00198 anthocyanidin reductase; Provisional
Probab=49.02 E-value=24 Score=35.07 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=25.5
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+.+|.|.| +|.||+.+++.|.+++ .+|+++.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 35899999 9999999999999875 5776553
No 365
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.01 E-value=66 Score=32.78 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=24.1
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|+|+|. |.+|+-+.+.|.++. ..+...+.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~ 191 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHS 191 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEEECC
Confidence 48999996 599999999998773 66554443
No 366
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=48.95 E-value=1.1e+02 Score=29.57 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=25.1
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+| .|.+|+.+++++.... ..++.+.+
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~ 172 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARG-INVINLVR 172 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCC-CeEEEEec
Confidence 789999 7999999999888874 67777765
No 367
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=48.95 E-value=6.6 Score=40.82 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.7
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+..||.|+|.|-+|..+++.|...+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~G 64 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAG 64 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC
Confidence 3469999999999999999998764
No 368
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=48.70 E-value=20 Score=38.65 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=29.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhh
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll 133 (425)
.+|||+|.|.+|..+.+.|.++. ++|...|. +.+....+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~dr---~~~~~~~l~ 41 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVYNR---TYEKTEEFV 41 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEEeC---CHHHHHHHH
Confidence 48999999999999999999885 77665543 455443333
No 369
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=48.24 E-value=57 Score=31.72 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=51.3
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+| .|.+|+.+++++.... +.++++... .+..-++.++ |- ...++.+... ....
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g-~~v~~~~~~---~~~~~~~~~~----g~-----------~~v~~~~~~~---~~~~ 206 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG-YEVVASTGK---ADAADYLKKL----GA-----------KEVIPREELQ---EESI 206 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC-CeEEEEecC---HHHHHHHHHc----CC-----------CEEEcchhHH---HHHH
Confidence 789999 5999999999888774 777766542 2322233221 10 0111111100 0000
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.. +...++|+||||+|. ...+.+-.+++.+...+.+
T Consensus 207 ~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 207 KP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred Hh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 01 112468999999987 4556666777666544444
No 370
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.20 E-value=1.2e+02 Score=31.67 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=50.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEe-cCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFS-KRD 168 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~-~~d 168 (425)
.+|.|+|.|..|+..++.|..++ .+|.+ .|.........+| +. | +.++. ..+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D~~~~~~~~~~l----------------~~-------g--~~~~~~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRV-IDTRITPPGLDKL----------------PE-------N--VERHTGSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcCCCCchhHHHH----------------hc-------C--CEEEeCCCC
Confidence 37999999999999999888775 66654 4421111000000 00 1 11111 112
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEe
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVIS 209 (425)
+..+ .+.|+||-+.|.-.+......+.+.|+. |++
T Consensus 60 ~~~~----~~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 60 DEWL----LAADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred HHHh----cCCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 2222 2568999888887666667777788884 454
No 371
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=48.13 E-value=1.4e+02 Score=29.36 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=26.4
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHh
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYM 132 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayl 132 (425)
+|.|+|.|.+|+.+++++.... .+++.+.+ .+.+...++
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~--~~~~~~~~~ 202 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARG-VGPIVASD--FSPERRALA 202 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC--CCHHHHHHH
Confidence 7899999999999988887764 55444443 234444333
No 372
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=48.05 E-value=20 Score=37.41 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.5
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDD 113 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~ 113 (425)
..+|||+|||-.||.+.+-+..+++
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh 76 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH 76 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc
Confidence 5799999999999999999988864
No 373
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=47.67 E-value=36 Score=38.52 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
||+|+|.|.+|..+...+... .++|+-+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~ 342 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMK 342 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEE
Confidence 799999999999999888877 4887644
No 374
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=47.65 E-value=33 Score=27.41 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=38.9
Q ss_pred eeEEEEecCCCCHHHHHHHHHHhhcC--CCCccccccCCc--eEeecCCCCCcc
Q 014424 330 VDLTCRLAKGASYEDVKAAIKYASEG--SLKGILGYTDED--VVSNDFVGDSRS 379 (425)
Q Consensus 330 ~dltv~lek~~s~eeI~~alk~a~~~--~lkgil~yte~~--~VS~Df~~~~~s 379 (425)
..++++...+.+.+++.+.+++-..+ .+||++..++++ .+..++.++.+.
T Consensus 2 ~s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 2 SSFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 35778889999999999999887644 579999988764 466677777654
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.60 E-value=25 Score=35.95 Aligned_cols=28 Identities=32% Similarity=0.249 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
||||+|.|.+|+.+...+... .++|+..
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~ 36 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAW 36 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEE
Confidence 799999999999999988877 4887644
No 376
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=47.47 E-value=26 Score=35.27 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
+||+|+|.|.+|..++-.+..++..+|+-+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvlv 31 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLL 31 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEE
Confidence 499999999999999998887653365544
No 377
>PRK08017 oxidoreductase; Provisional
Probab=47.45 E-value=29 Score=32.62 Aligned_cols=31 Identities=26% Similarity=0.126 Sum_probs=25.4
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|-|.| .|.||+.+++.|.+++ .+++.+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 4699999 7999999999998874 67766644
No 378
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=47.42 E-value=25 Score=36.60 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=26.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|-|.|+|++|+.+++.|.++ +.+++.|..
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid~ 262 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE-GYSVKLIER 262 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEC
Confidence 5899999999999999999876 467777753
No 379
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=47.34 E-value=24 Score=35.24 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=23.9
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||-|-| +|.||+.+++.|.+++.-.++.+.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 899999 999999999999987533344443
No 380
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.26 E-value=26 Score=34.60 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=24.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.||+|+|.|.+|..+...+..++ .+|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEe
Confidence 48999999999999999888763 6665443
No 381
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=46.78 E-value=1.5e+02 Score=29.99 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=50.8
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.+|..+++++...+ .+ ++++.. +.+....+-+ +|. ...++.+...+.. ..
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~---~~~k~~~~~~----~g~-----------~~~i~~~~~~~~~--~v 247 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDI---VDSRLELAKE----LGA-----------THVINPKEEDLVA--AI 247 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHH----cCC-----------cEEecCCCcCHHH--HH
Confidence 7899999999999998888774 54 555543 2333222211 111 0111110000000 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.+.. ..++|+|+||+|.....+.+..+++.+.+.+.+
T Consensus 248 ~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 248 REIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEe
Confidence 1111 247999999998654556666777766644444
No 382
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=46.59 E-value=39 Score=33.69 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=21.1
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 92 VGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 92 VaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
|+|+|.|.+|..+...+..++-.+|+-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 6899999999999887776541266544
No 383
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=46.46 E-value=1.6e+02 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=23.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+|.|.+|+.+++++.... .+++++..
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEcC
Confidence 7999996669999999887764 67766643
No 384
>PRK07877 hypothetical protein; Provisional
Probab=45.88 E-value=10 Score=43.06 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=53.9
Q ss_pred ceeEEEEccChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECC-EEEEEEec
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEING-KLIKVFSK 166 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~G-k~I~v~~~ 166 (425)
.-||+|+|.| +|..++..|...+-+ +|.-|..-..+...+=..+-..+.-|+.+..+-.+ .-..+|- -+|..+.+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~--~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAAR--RIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHH--HHHHHCCCCEEEEEec
Confidence 4699999999 899999888754310 22222111111211112111112235544321110 0001221 12333322
Q ss_pred -CCCCCCCCcccCcCEEEEccCcccCHHHHH-HHHhCCCCEEEEeCC
Q 014424 167 -RDPAEIPWGDYGVDYVVESSGVFTTIAKAS-AHMKGGAKKVVISAP 211 (425)
Q Consensus 167 -~dp~~i~W~~~gvDiV~esTG~f~s~e~a~-~hl~aGakkVVISap 211 (425)
-++++++=--.++|+||||+..|.++-... ...+.|. -+|++.
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~ 228 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMAT 228 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 123332200137999999999987764443 2334444 444444
No 385
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=45.76 E-value=22 Score=36.84 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
|||.+.|.|.+||-++..++.+.+.+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 3899999999999776666655567887775
No 386
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=45.71 E-value=69 Score=31.68 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=24.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+|.|.+|+.+++++... .+.++++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASAL-GARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEeC
Confidence 789999999999999988877 478776644
No 387
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=45.18 E-value=1.1e+02 Score=29.73 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=24.1
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+| .|.+|+.+++++.... ..++++..
T Consensus 148 ~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~ 178 (329)
T cd05288 148 TVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAG 178 (329)
T ss_pred EEEEecCcchHHHHHHHHHHHcC-CEEEEEeC
Confidence 789999 7999999998887764 67766643
No 388
>PRK08223 hypothetical protein; Validated
Probab=45.12 E-value=22 Score=35.97 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.4
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
.-||.|+|.|-+|..++..|..-+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG 50 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG 50 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC
Confidence 358999999999999999887653
No 389
>PRK07326 short chain dehydrogenase; Provisional
Probab=44.95 E-value=32 Score=31.86 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=26.0
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|-|.| +|.||+.+++.|.++ ..+|+.+..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeC
Confidence 4799999 899999999999887 478777653
No 390
>PLN02214 cinnamoyl-CoA reductase
Probab=44.52 E-value=31 Score=34.80 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=26.1
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 4899999 8999999999999884 67777654
No 391
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=44.41 E-value=27 Score=34.92 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=24.3
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.||-|.| +|.||+.+++.|.++. .+++.+.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 4899999 9999999999999875 44444433
No 392
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.13 E-value=2.1e+02 Score=28.38 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=23.1
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCce-EEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~e-vvaIn 120 (425)
-+|.|+|.|.||+.+++++...+ .+ ++++.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~ 198 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG-AGRIIAVG 198 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 37899999999999998887764 54 55443
No 393
>PLN02702 L-idonate 5-dehydrogenase
Probab=44.10 E-value=64 Score=32.40 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=50.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec-CC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK-RD 168 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~-~d 168 (425)
+|.|+|.|.+|...++++.... .. ++++ +. +.+.+..+.++ |. +. .+.++.+.....+. ..
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~-~~--~~~~~~~~~~~----g~---~~------~~~~~~~~~~~~~~~~~ 246 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFG-APRIVIV-DV--DDERLSVAKQL----GA---DE------IVLVSTNIEDVESEVEE 246 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEE-CC--CHHHHHHHHHh----CC---CE------EEecCcccccHHHHHHH
Confidence 7899999999999998888764 54 4444 32 23333222211 11 00 11111100000000 00
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.... . ..++|+||||+|.....+.+..+++.+.+.+.+
T Consensus 247 ~~~~-~-~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 247 IQKA-M-GGGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred Hhhh-c-CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0001 1 136899999998655556677788776644444
No 394
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=44.10 E-value=30 Score=36.73 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=28.5
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDP 122 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~ 122 (425)
.||+|-|||.+|+.+++.|.+. .-+||++.|.
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds 239 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDS 239 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 5999999999999999999776 4899999885
No 395
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=43.82 E-value=1.6e+02 Score=30.23 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=23.0
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+|.|+| .|.+|+.+++++.... ..++.+.
T Consensus 192 ~vlV~Ga~g~vG~~ai~~ak~~G-~~vi~~~ 221 (398)
T TIGR01751 192 NVLIWGAAGGLGSYATQLARAGG-GNPVAVV 221 (398)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcC-CeEEEEc
Confidence 789999 6999999998887764 6665553
No 396
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.78 E-value=3.3e+02 Score=26.77 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=51.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|.|-|.+|+.+++++...+ .. ++++... .+.. .+.+ .+|- ...++.+..... ++.
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~---~~~~-~~~~---~~ga-----------~~v~~~~~~~~~--~~i 229 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRH---EDRQ-ALAR---EFGA-----------TDIVAERGEEAV--ARV 229 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECCC---HHHH-HHHH---HcCC-----------ceEecCCcccHH--HHH
Confidence 7888899999999998887774 54 5555432 2222 1211 0111 011111100000 000
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISA 210 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISa 210 (425)
..+. ...++|++|+|+|.....+.+..+++.+...+.++.
T Consensus 230 ~~~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 230 RELT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred HHhc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecc
Confidence 0111 123799999999865566777777876654444443
No 397
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.55 E-value=52 Score=34.12 Aligned_cols=92 Identities=24% Similarity=0.254 Sum_probs=51.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEE--EEEEecCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL--IKVFSKRD 168 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~--I~v~~~~d 168 (425)
.+||.|.|.||-.++.-...+.-=.|++|.= .++...+ -..+|. -+ .||-+. -++ ++.
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvDi---N~~Kf~~----ak~fGa----Te-------~iNp~d~~~~i-~ev- 254 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVDI---NPDKFEK----AKEFGA----TE-------FINPKDLKKPI-QEV- 254 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEec---CHHHHHH----HHhcCc----ce-------ecChhhccccH-HHH-
Confidence 7999999999999888777665557777732 3333222 111111 11 122110 011 111
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCC
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAK 204 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGak 204 (425)
. ++-.+-|+||-|||+|.-..+..|-.....|-.
T Consensus 255 i--~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG 288 (375)
T KOG0022|consen 255 I--IEMTDGGVDYSFECIGNVSTMRAALESCHKGWG 288 (375)
T ss_pred H--HHHhcCCceEEEEecCCHHHHHHHHHHhhcCCC
Confidence 0 111245999999999998777665555555643
No 398
>PRK07023 short chain dehydrogenase; Provisional
Probab=43.40 E-value=32 Score=32.20 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=25.1
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+++-|.| +|.||+.+++.|.+++ .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 3899999 9999999999998874 6766554
No 399
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.37 E-value=2.6e+02 Score=26.71 Aligned_cols=86 Identities=27% Similarity=0.372 Sum_probs=50.3
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|.| .|.+|+.+++++.... ..+..+.. +.+..-.+.+ +|. . ......+
T Consensus 135 ~vli~g~~~~~g~~~~~~a~~~g-~~v~~~~~---~~~~~~~~~~----~g~---~-------~~~~~~~---------- 186 (305)
T cd08270 135 RVLVTGASGGVGRFAVQLAALAG-AHVVAVVG---SPARAEGLRE----LGA---A-------EVVVGGS---------- 186 (305)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC-CEEEEEeC---CHHHHHHHHH----cCC---c-------EEEeccc----------
Confidence 788999 6999999998887764 67666643 2333323322 111 0 0111100
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
++...++|++++|+|.- ..+.+-.+++.+.+.+.+
T Consensus 187 ---~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 187 ---ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSV 221 (305)
T ss_pred ---cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEE
Confidence 01123799999999864 456666777766644444
No 400
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=43.32 E-value=14 Score=37.98 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=25.8
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCCCc-eEEEEcC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRDDV-DVVAVND 121 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~~~-evvaInd 121 (425)
.+..||.|+|.|.+|..++..|...+ + +|.-|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~ 56 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDR 56 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 34569999999999999999998764 4 4544443
No 401
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.89 E-value=1.3e+02 Score=31.52 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=48.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCC-ceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEec-C
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDD-VDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSK-R 167 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~-~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~-~ 167 (425)
.||.|+|.|..|+..++.|..+.. .+|. +.|....+....+ |.- | +.++.. .
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~----------------------l~~-g--~~~~~g~~ 61 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQ----------------------LPE-D--VELHSGGW 61 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHH----------------------hhc-C--CEEEeCCC
Confidence 379999999999999999987743 6654 4553111110000 100 1 122112 2
Q ss_pred CCCCCCCcccCcCEEEEccCcccCHHHHHHHHhCCC
Q 014424 168 DPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (425)
Q Consensus 168 dp~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGa 203 (425)
+++.+ .+.|+|+-+.|.-.+......+.+.|.
T Consensus 62 ~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 62 NLEWL----LEADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred ChHHh----ccCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 44444 257999999998766555555555565
No 402
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=42.70 E-value=88 Score=30.55 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=52.2
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+| .|.+|+.+++++......+++.+... .+..-++.+ +|- ...++.+. .. .+ ..
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~----~g~-----------~~~~~~~~-~~-~~-~i 210 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKE----LGA-----------DHVINHHQ-DL-AE-QL 210 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHh----cCC-----------cEEEeCCc-cH-HH-HH
Confidence 789999 79999999998887743777766542 222222221 111 01111110 00 00 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEE
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVI 208 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVI 208 (425)
.... ..++|++|+|+|.....+.+..+++.+.+.+.+
T Consensus 211 ~~~~--~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 211 EALG--IEPVDYIFCLTDTDQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred HhhC--CCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEe
Confidence 1111 237999999998644556666777666544434
No 403
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=42.68 E-value=58 Score=33.77 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=23.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.|.|.||..+++++.... ..++.+.+
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d 217 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG-AAVVIVGD 217 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeC
Confidence 7889899999999998887764 56444545
No 404
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.67 E-value=31 Score=38.70 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=25.3
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC-CceEEEEc
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD-DVDVVAVN 120 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~-~~evvaIn 120 (425)
|..||+|+|+|.+|+.+++.+.+.. ..+|.+++
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d 35 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVD 35 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3358999999999999999998764 23555554
No 405
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=42.55 E-value=26 Score=37.20 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.0
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
|..+|||+|.|+||--+.-+...+ .++++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 346999999999998776555555 5888776
No 406
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=42.53 E-value=48 Score=25.94 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=22.4
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
||.|+|.|.+|-+++..|.+.. .++.-|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli 28 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLI 28 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEE
Confidence 6899999999999999998764 444333
No 407
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=42.22 E-value=50 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=28.8
Q ss_pred EEEEecCCCCHHHHHH-HHHHhhcCCCCccccccCCceEee
Q 014424 332 LTCRLAKGASYEDVKA-AIKYASEGSLKGILGYTDEDVVSN 371 (425)
Q Consensus 332 ltv~lek~~s~eeI~~-alk~a~~~~lkgil~yte~~~VS~ 371 (425)
++++..+.+|..+||+ +|++|.+-||-+.|+=.++.+.++
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~ 42 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSC 42 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEE
Confidence 4566678899999998 889999889999887665554443
No 408
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.00 E-value=1.2e+02 Score=31.91 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
-|.|+|.|.+|+.++|.|.+++ .+|. +.|
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v~-~~D 36 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPFA-VMD 36 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeEE-EEe
Confidence 5899999999999999999885 6654 555
No 409
>PLN02583 cinnamoyl-CoA reductase
Probab=41.88 E-value=42 Score=32.96 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.6
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEEc
Confidence 789999 9999999999999874 78877653
No 410
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.76 E-value=44 Score=30.78 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=23.7
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaI 119 (425)
.+|-|.| +|.||+.+++.|.+++ .+++.+
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g-~~v~~~ 36 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG-ADVVVH 36 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CeEEEE
Confidence 4899999 9999999999998875 455443
No 411
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.76 E-value=1.8e+02 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=23.3
Q ss_pred cCcCEEEEccCcccCHHHHHHHHhCCCCEEEEe
Q 014424 177 YGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (425)
Q Consensus 177 ~gvDiV~esTG~f~s~e~a~~hl~aGakkVVIS 209 (425)
.++|+||+++|.......+-..++.+.+.+++.
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEE
Confidence 479999999987666666667776555555553
No 412
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.75 E-value=74 Score=33.16 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred eeEEEEccChHHHHHHHHHHcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~ 111 (425)
+||+|+|.|.-|-.+...|.++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 4999999999999999999865
No 413
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=41.69 E-value=34 Score=35.54 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=24.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
-||.|+|+|.+|+.+++.+...+ .+|+.++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999998774 6766554
No 414
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=41.61 E-value=2e+02 Score=28.42 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=23.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+|.|+|.|.+|+.+++++...+...++.+.
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~ 198 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYSPSKIIMVD 198 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 788999999999999888777535666553
No 415
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=41.55 E-value=1.2e+02 Score=30.60 Aligned_cols=96 Identities=24% Similarity=0.316 Sum_probs=50.1
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEE-EEecCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIK-VFSKRD 168 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~-v~~~~d 168 (425)
+|.|+|.|.+|..+++++...+ .. ++++.. +.+...++-++ |. . -.++.+... -+. +.
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~---~~~~~~~~~~~----g~-~----------~~v~~~~~~~~~~-~~ 245 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDI---NKDKFEKAKQL----GA-T----------ECINPRDQDKPIV-EV 245 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHHh----CC-C----------eecccccccchHH-HH
Confidence 7889999999999998887774 54 444432 23333333222 11 0 011110000 000 00
Q ss_pred CCCCCCcccCcCEEEEccCcccCHHHHHHHHh-CCCCEEEE
Q 014424 169 PAEIPWGDYGVDYVVESSGVFTTIAKASAHMK-GGAKKVVI 208 (425)
Q Consensus 169 p~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~-aGakkVVI 208 (425)
..++. ..++|+|||++|.....+.+-.+++ .|.+.+.+
T Consensus 246 l~~~~--~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 246 LTEMT--DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred HHHHh--CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 00111 2479999999986555566667776 66643333
No 416
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=41.48 E-value=95 Score=30.49 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=24.3
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.|-|.+|+.+++++.......++++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 7899997779999999887764367776654
No 417
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=41.42 E-value=1e+02 Score=31.50 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=36.0
Q ss_pred CcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC-CCCCcEEeecCccccCCCCcEEecCCchhh
Q 014424 178 GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPS-ADAPMFVVGVNEKTYKPNMNIVSNASCTTN 242 (425)
Q Consensus 178 gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps-~Dvp~vV~gVN~~~~~~~~~IISnaSCTTn 242 (425)
+.|++|..+..-...+-.+.|++-|| +|+++-- +|+.+-|--+|.-.+- ...+|+.++-.|.
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii-~GGlV~~s~~it~ 292 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRII-PGGLVEHSLDITW 292 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEe-cCccccCccccch
Confidence 45666665544445566788999999 8998754 4555555545432221 2345555554443
No 418
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=41.32 E-value=31 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=27.0
Q ss_pred eeEEEEc-cChHHHHHHHHHHcC-CCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFR-DDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~-~~~evvaInd 121 (425)
+||.|.| +|.||+.+++.|.++ ++.+|+++..
T Consensus 7 ~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 7 KNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 4999999 999999999999876 3578887754
No 419
>PTZ00325 malate dehydrogenase; Provisional
Probab=41.25 E-value=47 Score=33.99 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.6
Q ss_pred eeEEEEcc-ChHHHHHHHHHHcCC
Q 014424 90 TKVGINGF-GRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGf-GrIGr~vlr~l~~~~ 112 (425)
.||+|.|. |.||..+...|..++
T Consensus 9 ~KI~IiGaaG~VGs~~a~~l~~~~ 32 (321)
T PTZ00325 9 FKVAVLGAAGGIGQPLSLLLKQNP 32 (321)
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC
Confidence 39999996 999999998887554
No 420
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=41.11 E-value=49 Score=35.68 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=25.5
Q ss_pred CCCCceeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 85 RSDGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 85 ~~~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
+.+++.+|.|+|.|..|-.+...|..+ .++++-|
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~vi 52 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLL 52 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEE
Confidence 334667999999999999888777665 3565544
No 421
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=40.95 E-value=40 Score=31.33 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=26.4
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
..+|.|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 35799999 9999999999999885 67776654
No 422
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=40.73 E-value=20 Score=36.52 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.2
Q ss_pred eEEEEccChHHHHHHHHHHcCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~ 112 (425)
||.|+|.|-+|-++++.|...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~G 22 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG 22 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhc
Confidence 6899999999999999887653
No 423
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=40.46 E-value=1.2e+02 Score=29.35 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=24.5
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+| .|.+|+.+++.+.... ..++.+..
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~~ 195 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALG-ARVIAVTR 195 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CeEEEEeC
Confidence 789999 7999999999998774 77766643
No 424
>PRK15076 alpha-galactosidase; Provisional
Probab=40.07 E-value=31 Score=36.65 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=11.6
Q ss_pred eeEEEEccChHHH
Q 014424 90 TKVGINGFGRIGR 102 (425)
Q Consensus 90 ikVaInGfGrIGr 102 (425)
+||+|+|.|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 5999999999983
No 425
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=40.06 E-value=1e+02 Score=30.23 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=24.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
++.|.|.|-+|+.+++.|.+.+ .+|...+.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g-~~v~v~~R 148 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKAD-CNVIIANR 148 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 7899999999999999998775 56655554
No 426
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=39.93 E-value=44 Score=31.03 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=20.9
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.++.|.|||.+||-+++.|.... .. |.|.+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e 53 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTE 53 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEE
Confidence 37999999999999999998774 33 33555
No 427
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=39.85 E-value=41 Score=31.43 Aligned_cols=31 Identities=32% Similarity=0.169 Sum_probs=25.1
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaI 119 (425)
|+.+|.|.| .|-||+.+++.|.+++ .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 445899999 8999999999998874 666543
No 428
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.69 E-value=1.5e+02 Score=31.74 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
||.|+|.|..|+.++|.|..++ .+|.+.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G-~~v~~~ 36 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHG-ARLRVA 36 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCC-CEEEEE
Confidence 7999999999999999999885 676544
No 429
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=39.53 E-value=39 Score=27.16 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=35.4
Q ss_pred eeEEEEecCCCCHHHHHHHHHHhhcC--CCCccccccCC-ceEeecCCCCCcc
Q 014424 330 VDLTCRLAKGASYEDVKAAIKYASEG--SLKGILGYTDE-DVVSNDFVGDSRS 379 (425)
Q Consensus 330 ~dltv~lek~~s~eeI~~alk~a~~~--~lkgil~yte~-~~VS~Df~~~~~s 379 (425)
..++++.+++.+.+.+.+.+.+...+ ..||++.+.++ ...-.+..++.+.
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 46888999999999999999995544 57999988876 4556666666544
No 430
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=39.43 E-value=3.6e+02 Score=26.82 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=50.2
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|.|.|-+|...++++.... ..++++.. +.+.+..+.+ +| ....++- . +..
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~---~~~~~~~a~~----~G-----------a~~vi~~-----~---~~~ 220 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQG-ATVHVMTR---GAAARRLALA----LG-----------AASAGGA-----Y---DTP 220 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCC-CeEEEEeC---ChHHHHHHHH----hC-----------Cceeccc-----c---ccC
Confidence 7899999999999888877764 66665533 2333322222 11 1111220 0 110
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEe
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVIS 209 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVIS 209 (425)
..++|++++++|.....+.+-..++.|-+-+++.
T Consensus 221 -----~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 221 -----PEPLDAAILFAPAGGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred -----cccceEEEECCCcHHHHHHHHHhhCCCcEEEEEe
Confidence 1257889998877656666667777665444443
No 431
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.39 E-value=1e+02 Score=31.21 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=24.5
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.+|+|+| .|.+|+-+.+.|.++ ..+|...+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~-g~tVtv~~ 189 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA-NATVTIAH 189 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC-CCEEEEEC
Confidence 4899999 999999999999877 46765453
No 432
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=39.07 E-value=2.2e+02 Score=27.86 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=22.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaIn 120 (425)
+|.|+|.|.+|+.+++++...+ + .++++.
T Consensus 168 ~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~ 197 (339)
T cd08232 168 RVLVTGAGPIGALVVAAARRAG-AAEIVATD 197 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 7889999999999998887764 5 555553
No 433
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=38.96 E-value=1.8e+02 Score=29.51 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=23.4
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+|.|.| .|.+|..++.++... .++++++.
T Consensus 196 ~vlV~ga~g~iG~a~~~lak~~-G~~vv~~~ 225 (393)
T cd08246 196 NVLIWGASGGLGSMAIQLARAA-GANPVAVV 225 (393)
T ss_pred EEEEECCCcHHHHHHHHHHHHc-CCeEEEEe
Confidence 789999 699999999888776 47766654
No 434
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=38.88 E-value=86 Score=31.12 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=48.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDP 169 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp 169 (425)
+|.|+|.|.+|..+++++.... . .++.+.. +.+...++-++ |- ...++.+...... ..
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~---~~~~~~~~~~~----g~-----------~~~~~~~~~~~~~--~~ 236 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG-PANIIVVDI---DEAKLEAAKAA----GA-----------DVVVNGSDPDAAK--RI 236 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHHHHh----CC-----------cEEecCCCccHHH--HH
Confidence 7899999999999998888774 5 4444432 23333233221 10 0112211110000 00
Q ss_pred CCCCCcccCcCEEEEccCcccCHHHHHHHHhCCC
Q 014424 170 AEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGA 203 (425)
Q Consensus 170 ~~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGa 203 (425)
... +.. ++|++|+++|.....+.+..+++.+.
T Consensus 237 ~~~-~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 237 IKA-AGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred HHH-hCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 000 122 69999999986555666667776655
No 435
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=38.80 E-value=43 Score=31.53 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.0
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|-|.| .|.||+.+++.|.+++ .+|+.+..
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQG-HKVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCC-CEEEEEEC
Confidence 789999 8999999999998874 67766643
No 436
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=38.62 E-value=3.3e+02 Score=26.59 Aligned_cols=138 Identities=21% Similarity=0.296 Sum_probs=69.0
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPA 170 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~ 170 (425)
+|.|+|.|.+|+.+++++...+ +.++.+... .+.+...++.++ |. . .+ +.+.-... ....
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G-~~v~~~~~~-~~~~~~~~~~~~----g~-~-~~----------~~~~~~~~--~~l~ 226 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG-ATVVVVGTE-KDEVRLDVAKEL----GA-D-AV----------NGGEEDLA--ELVN 226 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CEEEEECCC-CCHHHHHHHHHh----CC-c-cc----------CCCcCCHH--HHHH
Confidence 6788889999999999988774 777665321 133333222222 11 0 00 00000000 0000
Q ss_pred CCCCcccCcCEEEEccCcccCHHHHHHHHhCCCCEEEEeCCCCCCCcEEeecC-ccccCCCCcEEecCCchhhhHHhHHH
Q 014424 171 EIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVN-EKTYKPNMNIVSNASCTTNCLAPLAK 249 (425)
Q Consensus 171 ~i~W~~~gvDiV~esTG~f~s~e~a~~hl~aGakkVVISaps~Dvp~vV~gVN-~~~~~~~~~IISnaSCTTn~Lap~lk 249 (425)
.+ ....++|++++|.|.....+....+++.+.+.+.++..+ +.+ + .+| ...+.+...|..+-.++...+.-+++
T Consensus 227 ~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~-~--~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 301 (306)
T cd08258 227 EI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-PLA-A--SIDVERIIQKELSVIGSRSSTPASWETALR 301 (306)
T ss_pred HH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-CCC-c--ccCHHHHhhcCcEEEEEecCchHhHHHHHH
Confidence 00 112479999999875444455567777666555565543 111 1 112 11112234555555555666666666
Q ss_pred HHHh
Q 014424 250 VVHE 253 (425)
Q Consensus 250 ~L~d 253 (425)
.+++
T Consensus 302 ~~~~ 305 (306)
T cd08258 302 LLAS 305 (306)
T ss_pred HHhc
Confidence 5543
No 437
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=38.62 E-value=2.8e+02 Score=27.24 Aligned_cols=30 Identities=37% Similarity=0.421 Sum_probs=24.6
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|-|+|.|.+|+.+++++... .++++++..
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~ 191 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKAR-GARVIVVDI 191 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEECC
Confidence 788999999999999988877 477776644
No 438
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.48 E-value=1.2e+02 Score=30.66 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=21.2
Q ss_pred eeEEEEccCh-HHHHHHHHHHcCCCceEE
Q 014424 90 TKVGINGFGR-IGRLVLRVAAFRDDVDVV 117 (425)
Q Consensus 90 ikVaInGfGr-IGr~vlr~l~~~~~~evv 117 (425)
.+|.|+|.|. +|+-+.++|.++. ..+.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~g-atVt 186 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKN-ASVT 186 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCC-CeEE
Confidence 4899999766 9999999998763 4543
No 439
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=38.48 E-value=13 Score=31.34 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCCCCCCCCcccCc
Q 014424 100 IGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGV 179 (425)
Q Consensus 100 IGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~dp~~i~W~~~gv 179 (425)
||...++++.... .+|+++.. +.+.+.++.++ | ....+...+. . +. ....++- ...++
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~---~~~k~~~~~~~----G-a~~~~~~~~~-~---------~~--~~i~~~~-~~~~~ 59 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDR---SEEKLELAKEL----G-ADHVIDYSDD-D---------FV--EQIRELT-GGRGV 59 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEES---SHHHHHHHHHT----T-ESEEEETTTS-S---------HH--HHHHHHT-TTSSE
T ss_pred hHHHHHHHHHHcC-CEEEEEEC---CHHHHHHHHhh----c-cccccccccc-c---------cc--ccccccc-ccccc
Confidence 7888888887776 78877754 45555444332 2 0001111000 0 00 0001111 12489
Q ss_pred CEEEEccCcccCHHHHHHHHhCCCCEEEEeCCC
Q 014424 180 DYVVESSGVFTTIAKASAHMKGGAKKVVISAPS 212 (425)
Q Consensus 180 DiV~esTG~f~s~e~a~~hl~aGakkVVISaps 212 (425)
|+||||+|.....+.+-..++.|.+-+++..+.
T Consensus 60 d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 60 DVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred eEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 999999997777777777888777667776554
No 440
>PRK12320 hypothetical protein; Provisional
Probab=38.42 E-value=39 Score=38.26 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=26.0
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 899999 9999999999998874 68777764
No 441
>PRK07411 hypothetical protein; Validated
Probab=38.32 E-value=15 Score=38.42 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.7
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..||.|+|.|-+|-.++..|..-+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G 61 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG 61 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC
Confidence 459999999999999999887653
No 442
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.90 E-value=49 Score=31.03 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=26.1
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|..+|-|.| +|.||+.+++.|.+++ .+++.+..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r 34 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG-FDLAINDR 34 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEec
Confidence 334678889 9999999999999885 67776653
No 443
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.88 E-value=1.5e+02 Score=30.84 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.|.|++|+..++.|.+++ .+|+. .|
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d 35 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLG-ANVTV-ND 35 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC-CEEEE-Ec
Confidence 7899999999999999998875 66554 44
No 444
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=37.86 E-value=75 Score=31.70 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=24.4
Q ss_pred eEEEEccChHHHHHHHHHHc----------CCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAF----------RDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~----------~~~~evvaInd 121 (425)
+|.|+|-|=||.-++++|.. .+++.+.-+|.
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NR 72 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNR 72 (263)
T ss_pred cEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccch
Confidence 89999999999999999974 24566655554
No 445
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=37.85 E-value=64 Score=35.00 Aligned_cols=38 Identities=26% Similarity=0.255 Sum_probs=28.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhH
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAY 131 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ay 131 (425)
-||||+|.|.+|+-+.+.+... .++|+..+- +.+.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~---~~e~l~~ 45 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLLYDA---RAGAAAA 45 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEeC---CHHHHHH
Confidence 3799999999999999988877 488765442 4554433
No 446
>PRK08328 hypothetical protein; Provisional
Probab=37.19 E-value=28 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
.-||.|+|.|-+|..+++.|...+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G 50 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG 50 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999988664
No 447
>PRK05086 malate dehydrogenase; Provisional
Probab=37.09 E-value=46 Score=33.67 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred eeEEEEc-cChHHHHHHHHHHc
Q 014424 90 TKVGING-FGRIGRLVLRVAAF 110 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~ 110 (425)
+||+|+| +|.||+.++..|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 4999999 59999999987754
No 448
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.93 E-value=21 Score=36.89 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.7
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+..||.|+|.|-+|..+++.|...+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G 158 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG 158 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC
Confidence 4568999999999999999998764
No 449
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=36.85 E-value=35 Score=36.72 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=29.4
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhh
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMF 133 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll 133 (425)
+|||+|+|.+|+.+++.|.+++ ++|...|. +.+....+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~dr---t~~~~~~l~ 39 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYNR---TPEKTDEFL 39 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEeC---CHHHHHHHH
Confidence 4899999999999999999885 78776654 455444443
No 450
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=36.81 E-value=31 Score=34.14 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccCCccceEEEeCCCeEEECCEEEEEEecCC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRD 168 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g~f~~~v~~~~~~~l~i~Gk~I~v~~~~d 168 (425)
|||-|.| ||- ||.+++.|.+.+ .++++-.. +......+.-.|..-......+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~-------------------------t~~~~~~~~~~g~~~v~~g~l~ 53 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVT-------------------------TSEGKHLYPIHQALTVHTGALD 53 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEc-------------------------cCCccccccccCCceEEECCCC
Q ss_pred CCCC--CCcccCcCEEEEccCcc
Q 014424 169 PAEI--PWGDYGVDYVVESSGVF 189 (425)
Q Consensus 169 p~~i--~W~~~gvDiV~esTG~f 189 (425)
.+.+ -+.+.++|+|+|+|..|
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHH
No 451
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.80 E-value=1e+02 Score=31.84 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+||+|+|.|.=|..+...|.++.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng 24 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG 24 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC
Confidence 59999999999999999998774
No 452
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=36.56 E-value=2.4e+02 Score=28.29 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=23.9
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaInd 121 (425)
+|.|+|.|.+|+.+++++...+ .. ++.+..
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~ 215 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAG-ASRIIAVDP 215 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCcEEEEcC
Confidence 7889999999999999888764 65 666543
No 453
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.48 E-value=56 Score=30.20 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.4
Q ss_pred CceeEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 014424 88 GNTKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 88 m~ikVaInG-fGrIGr~vlr~l~~~~~~evvaI 119 (425)
|+.+|-|.| +|.||+.+++.+.+++ .+++.+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 334799999 8999999999998774 777666
No 454
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=36.38 E-value=44 Score=33.33 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=25.8
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|-|-| +|.||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG-YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC-CEEEEEec
Confidence 788999 9999999999999874 68887754
No 455
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=36.37 E-value=45 Score=32.20 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.0
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||-|.| +|.||+.+++.|.+++ .+++.+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEe
Confidence 578999 9999999999998874 6776664
No 456
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.27 E-value=1.3e+02 Score=30.20 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=20.5
Q ss_pred eeEEEEccCh-HHHHHHHHHHcCCCceE
Q 014424 90 TKVGINGFGR-IGRLVLRVAAFRDDVDV 116 (425)
Q Consensus 90 ikVaInGfGr-IGr~vlr~l~~~~~~ev 116 (425)
.+|.|+|.|. +||-+..+|.++. ..|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g-atV 186 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN-ATV 186 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC-CEE
Confidence 3899999775 9999999888764 443
No 457
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=36.21 E-value=36 Score=32.46 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.1
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 92 VaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeC
Confidence 35889 9999999999998874 78887765
No 458
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=36.13 E-value=1.3e+02 Score=32.89 Aligned_cols=29 Identities=28% Similarity=0.161 Sum_probs=23.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
-||.|.|.|.+|+..++.+.... ..++++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V~v~ 193 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIVRAF 193 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 49999999999999999988774 444443
No 459
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=35.94 E-value=3.2e+02 Score=26.99 Aligned_cols=29 Identities=34% Similarity=0.334 Sum_probs=22.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaIn 120 (425)
+|.|.|.|.+|..+++++...+ .. ++++.
T Consensus 165 ~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~ 194 (343)
T cd05285 165 TVLVFGAGPIGLLTAAVAKAFG-ATKVVVTD 194 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 7889999999999999888764 55 55553
No 460
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=35.93 E-value=61 Score=32.46 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=32.2
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcc
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYD 136 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yD 136 (425)
|+|+.+|.||.|..+.+-|.++. -++|+-. .+++....+..|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~yD---~n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGYD---VNQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEEc---CCHHHHHHHHhcC
Confidence 38999999999999999999884 6777653 2555555665543
No 461
>PLN02650 dihydroflavonol-4-reductase
Probab=35.65 E-value=55 Score=32.79 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=24.8
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+|-|-| +|.||+.+++.|.+++ .+|+++.
T Consensus 7 ~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~ 36 (351)
T PLN02650 7 TVCVTGASGFIGSWLVMRLLERG-YTVRATV 36 (351)
T ss_pred EEEEeCCcHHHHHHHHHHHHHCC-CEEEEEE
Confidence 899999 9999999999999874 6776653
No 462
>PRK12827 short chain dehydrogenase; Provisional
Probab=34.99 E-value=56 Score=30.23 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=25.6
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.+++-|.| .|.||+.+++.|.+++ .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 35899999 8999999999999875 6776654
No 463
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=34.91 E-value=82 Score=31.69 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.7
Q ss_pred EEccChHHHHHHHHHHcCCCc-eEE
Q 014424 94 INGFGRIGRLVLRVAAFRDDV-DVV 117 (425)
Q Consensus 94 InGfGrIGr~vlr~l~~~~~~-evv 117 (425)
|+|.|.||..++-.|..++-+ ||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~ 25 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIV 25 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEE
Confidence 689999999999988877533 344
No 464
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=34.48 E-value=1.9e+02 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=22.5
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaI 119 (425)
.+|.|.| ...+|+.+..+|.++ +..+..+
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~-gatV~~~ 58 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD-GATVYSC 58 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEe
Confidence 4899999 899999999888876 3555434
No 465
>PRK07236 hypothetical protein; Provisional
Probab=34.22 E-value=57 Score=33.25 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=25.9
Q ss_pred CCceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
||+++|.|+|-|..|-.+...|..+ .++++-+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEe
Confidence 5567999999999999998888776 46655443
No 466
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.06 E-value=54 Score=32.80 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.5
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVV 117 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evv 117 (425)
||+|+|.|.+|..+...|.+.. .+|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~ 27 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVN 27 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 8999999999999999887663 4444
No 467
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=34.04 E-value=49 Score=32.27 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.1
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 92 VGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 92 VaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|-|.| +|.||+.+++.|.+++ .+++++-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEec
Confidence 46889 9999999999999875 55565544
No 468
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=33.94 E-value=50 Score=28.64 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=50.3
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhccc-ccCCccceEEEeCCCeEE-EC-CEEEEEEec
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDS-THGVFKGTINVVDDSTLE-IN-GKLIKVFSK 166 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS-~~g~f~~~v~~~~~~~l~-i~-Gk~I~v~~~ 166 (425)
.||.|.|.|.+|..+++.|...+--++.-+.+-..+++.+.+-+-|.. .-|+++.+.-.+ .|. +| +-.+..+..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~---~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKE---RLQEINPDVEVEAIPE 79 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHH---HHHHHSTTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHH---HHHHhcCceeeeeeec
Confidence 489999999999999999976542133334332334444444322222 225544321100 000 11 112233221
Q ss_pred C-CCCCC-CCcccCcCEEEEccCcccCHHHHHH
Q 014424 167 R-DPAEI-PWGDYGVDYVVESSGVFTTIAKASA 197 (425)
Q Consensus 167 ~-dp~~i-~W~~~gvDiV~esTG~f~s~e~a~~ 197 (425)
. +.+.+ .+ -.+.|+||+|++....+.....
T Consensus 80 ~~~~~~~~~~-~~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 80 KIDEENIEEL-LKDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp HCSHHHHHHH-HHTSSEEEEESSSHHHHHHHHH
T ss_pred cccccccccc-ccCCCEEEEecCCHHHHHHHHH
Confidence 1 11111 01 1378999999988665544433
No 469
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=33.87 E-value=83 Score=30.70 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=24.4
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|.| .|.+|+.+++++.... .+++++..
T Consensus 143 ~vlI~g~~g~ig~~~~~lak~~G-~~v~~~~~ 173 (327)
T PRK10754 143 QFLFHAAAGGVGLIACQWAKALG-AKLIGTVG 173 (327)
T ss_pred EEEEEeCCcHHHHHHHHHHHHcC-CEEEEEeC
Confidence 788997 8999999998888774 77776654
No 470
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=33.71 E-value=64 Score=28.09 Aligned_cols=29 Identities=34% Similarity=0.308 Sum_probs=23.1
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 92 VGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 92 VaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|+|+|.|.||..+.-.|.+. ..+|.-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEc
Confidence 78999999999999888764 466666655
No 471
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=33.65 E-value=21 Score=37.24 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.3
Q ss_pred CceeEEEEccChHHHHHHHHHHcCC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+..||.|+|.|-+|..++..|...+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~G 65 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAG 65 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcC
Confidence 3569999999999999999987653
No 472
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.60 E-value=2.9e+02 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.6
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAV 119 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaI 119 (425)
.+|.|.|.|.+|+.++|.|.+++ ..|+..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~ 34 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAAY 34 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 38999999999999999999886 676544
No 473
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=33.51 E-value=41 Score=36.52 Aligned_cols=126 Identities=13% Similarity=0.240 Sum_probs=66.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHHhHhhhcccccC-C----ccc---eEEEeCCCeEEECCEEE
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYMAYMFKYDSTHG-V----FKG---TINVVDDSTLEINGKLI 161 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ayll~yDS~~g-~----f~~---~v~~~~~~~l~i~Gk~I 161 (425)
.+||++|.|..|+.+.+-|.+++ ++|..-|. +++...-+.+--...| . +.. -++..+.-.++ |
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G-~~V~V~NR---t~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvI-----i 77 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG-FPISVYNR---TTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSV-----I 77 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC-CeEEEECC---CHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEE-----E
Confidence 38999999999999999999885 88775554 3443333322000001 0 000 01000000111 1
Q ss_pred EEEecCCCCC--------CCCcccCcCEEEEccCcc--cCHHHHHHHHhCCCCEEEEeCCC-------CCCCcEEeecCc
Q 014424 162 KVFSKRDPAE--------IPWGDYGVDYVVESSGVF--TTIAKASAHMKGGAKKVVISAPS-------ADAPMFVVGVNE 224 (425)
Q Consensus 162 ~v~~~~dp~~--------i~W~~~gvDiV~esTG~f--~s~e~a~~hl~aGakkVVISaps-------~Dvp~vV~gVN~ 224 (425)
.. -.+.+. ++--. .=|+++|++-.. .+.+.+..+.+.|. -.+++|- ..-|.+++|=+.
T Consensus 78 ~~--v~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 78 IL--VKAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred EE--CCCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 11 111111 11111 237999998543 45555566666677 4667763 135688888887
Q ss_pred cccCC
Q 014424 225 KTYKP 229 (425)
Q Consensus 225 ~~~~~ 229 (425)
+.|+.
T Consensus 153 ~a~~~ 157 (493)
T PLN02350 153 EAYKN 157 (493)
T ss_pred HHHHH
Confidence 77764
No 474
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=33.39 E-value=3.6e+02 Score=26.62 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=22.5
Q ss_pred eEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDV-DVVAV 119 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~-evvaI 119 (425)
+|.|+|.|.+|+.+++++...+ . .++.+
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G-~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAG-ASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEE
Confidence 7889899999999998887764 5 46556
No 475
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.33 E-value=39 Score=36.20 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=22.0
Q ss_pred CCceeEEEEccChHHHHHHHHHHcC
Q 014424 87 DGNTKVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 87 ~m~ikVaInGfGrIGr~vlr~l~~~ 111 (425)
+|+.+|+|+|.|..|-..+|.|.++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC
Confidence 4567999999999999999998876
No 476
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=33.11 E-value=1e+02 Score=30.06 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=24.3
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+| .|.+|+.+++++... ..+++++..
T Consensus 142 ~vlI~ga~g~ig~~~~~~a~~~-g~~v~~~~~ 172 (329)
T cd08250 142 TVLVTAAAGGTGQFAVQLAKLA-GCHVIGTCS 172 (329)
T ss_pred EEEEEeCccHHHHHHHHHHHHc-CCeEEEEeC
Confidence 789999 899999998888776 477766654
No 477
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=33.05 E-value=65 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=26.2
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r 38 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKG-YEVHGIIR 38 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEEEec
Confidence 3899999 8999999999999884 78877643
No 478
>PRK05586 biotin carboxylase; Validated
Probab=32.94 E-value=53 Score=34.60 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=27.9
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|..||+|.|-|.+|+.+++++.+.+ ++++++..
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG-~~~v~v~~ 33 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMG-IETVAVYS 33 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CcEEEEcC
Confidence 3459999999999999999998884 88888843
No 479
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=32.68 E-value=1.3e+02 Score=30.60 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=23.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+|.|.+|+.+++++...+.-.++++..
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~ 217 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLLGAERVIAIDR 217 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7899999999999999888775223665543
No 480
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=32.61 E-value=62 Score=33.28 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=25.8
Q ss_pred eeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|+|+|-|..|+.+.+++.+.+ ++++.+..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG-~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG-YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEeC
Confidence 48999999999999999888774 88776643
No 481
>PRK07201 short chain dehydrogenase; Provisional
Probab=32.23 E-value=57 Score=35.66 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=25.5
Q ss_pred eEEEEc-cChHHHHHHHHHHc-CCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAF-RDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~-~~~~evvaInd 121 (425)
||-|-| +|.||+.+++.|.+ ....+|.++..
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 899999 99999999999984 23467777765
No 482
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=32.07 E-value=3.9e+02 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=21.8
Q ss_pred eEEEEccChHHHHHHHHHHcCCCce-EEEEc
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVD-VVAVN 120 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~e-vvaIn 120 (425)
+|.|.|.|.+|+.+++++.... .. ++++.
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~ 206 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLKN-PKKLIVLD 206 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEEc
Confidence 6788889999999999888774 44 44443
No 483
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.83 E-value=64 Score=29.96 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=25.4
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|-|.| +|.||+.+++.|.+++ .+|+.+..
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r 37 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEG-ARVVVTDR 37 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 789999 9999999999999884 67776654
No 484
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=31.60 E-value=55 Score=33.03 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=30.8
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcCC---CCChHHHhHhhh
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVNDP---FIDAKYMAYMFK 134 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd~---~~~~~~~ayll~ 134 (425)
||.|.| .|.+|..+.+.|. +.++++++... ..+++.+..+++
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i~ 47 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVIR 47 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccccChHHHHHHHH
Confidence 699999 9999999999886 56888887442 245555555553
No 485
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=31.52 E-value=70 Score=32.06 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=25.6
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+||-|.| +|.||+.+++.|.+++ .+|+++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 4899999 8999999999999874 6777664
No 486
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=31.30 E-value=1.1e+02 Score=28.25 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.6
Q ss_pred eeEEEEccCh-HHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGINGFGR-IGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInGfGr-IGr~vlr~l~~~~~~evvaInd 121 (425)
.||.|+|.|. +|+.+++.|.++. ..+..++.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 4899999997 5998999998874 56665665
No 487
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=31.27 E-value=59 Score=35.26 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.4
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcCCCCChHHH
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVNDPFIDAKYM 129 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd~~~~~~~~ 129 (425)
||||+|.|.+|+-+...+... .++|+..+- +.+.+
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~---~~e~l 41 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDI---RAEAL 41 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeC---CHHHH
Confidence 899999999999999998877 478765543 45544
No 488
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.06 E-value=59 Score=33.12 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.7
Q ss_pred eeEEEEccChHHHHHHHHHHcCC
Q 014424 90 TKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 90 ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
+||+|+|.|.+|..+...|.++.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC
Confidence 49999999999999999888775
No 489
>PRK07074 short chain dehydrogenase; Provisional
Probab=30.91 E-value=73 Score=29.98 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.6
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
.++-|.| +|.||+.+++.|.++. .+|+.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g-~~v~~~~ 33 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAG-DRVLALD 33 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCC-CEEEEEe
Confidence 3688999 8999999999998874 6776654
No 490
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=30.82 E-value=63 Score=34.05 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=28.4
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
|+.||.|.|-|.++..+++++.+. .++++++..
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~l-G~~vv~~~~ 33 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKEL-GIKTVAVHS 33 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHc-CCeEEEEEC
Confidence 345999999999999999999988 489988853
No 491
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=30.81 E-value=44 Score=31.46 Aligned_cols=24 Identities=8% Similarity=0.260 Sum_probs=21.0
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..||.|+|.|-+|..+++.|...+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~G 44 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSG 44 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcC
Confidence 459999999999999999998764
No 492
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=30.50 E-value=96 Score=31.64 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=24.7
Q ss_pred CceeEEEEccChHHHHHHHHHHcCCCceEEEEc
Q 014424 88 GNTKVGINGFGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 88 m~ikVaInGfGrIGr~vlr~l~~~~~~evvaIn 120 (425)
..++|.|+|-|..|-.++..|..+ .+++.-+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E 48 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS-GLRIALIE 48 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC-CCEEEEEe
Confidence 356999999999999988888765 46655443
No 493
>PRK06180 short chain dehydrogenase; Provisional
Probab=30.46 E-value=76 Score=30.51 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=25.7
Q ss_pred eeEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 90 TKVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 90 ikVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
.+|-|.| .|-||+.+++.|.+++ .+|+++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAG-HRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCc-CEEEEEeC
Confidence 4689999 8999999999998874 67776654
No 494
>PRK07024 short chain dehydrogenase; Provisional
Probab=30.24 E-value=77 Score=29.99 Aligned_cols=31 Identities=29% Similarity=0.220 Sum_probs=25.0
Q ss_pred ceeEEEEc-cChHHHHHHHHHHcCCCceEEEEc
Q 014424 89 NTKVGING-FGRIGRLVLRVAAFRDDVDVVAVN 120 (425)
Q Consensus 89 ~ikVaInG-fGrIGr~vlr~l~~~~~~evvaIn 120 (425)
+.+|-|.| +|-||+.+++.|.+++ ..|+.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~ 33 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVA 33 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 34788999 9999999999998874 5766554
No 495
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=29.91 E-value=42 Score=39.65 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.1
Q ss_pred ceeEEEEccChHHHHHHHHHHcC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~ 111 (425)
..||.|+|.|-+|..+++.|..-
T Consensus 419 ~~kVlvvGaGGlG~e~lknLal~ 441 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCEMLKNFALM 441 (1008)
T ss_pred hCcEEEECCChHHHHHHHHHHHh
Confidence 46899999999999999988654
No 496
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=29.79 E-value=1.5e+02 Score=30.63 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.9
Q ss_pred eEEEEccChHHHHHHHHHHcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFR 111 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~ 111 (425)
||+|+|.|.-|..+...|.++
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999988764
No 497
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=29.65 E-value=66 Score=31.53 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=24.8
Q ss_pred eEEEEc-cChHHHHHHHHHHcCC-CceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRD-DVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~-~~evvaInd 121 (425)
+|-|-| +|.||+.+++.|.+++ ...|+++..
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 467899 9999999999999874 256777654
No 498
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=29.61 E-value=1.9e+02 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.5
Q ss_pred eEEEEc-cChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGING-FGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInG-fGrIGr~vlr~l~~~~~~evvaInd 121 (425)
+|.|+| .|.+|+.+++++...+ .+++++.+
T Consensus 165 ~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~ 195 (350)
T cd08248 165 RVLILGGSGGVGTFAIQLLKAWG-AHVTTTCS 195 (350)
T ss_pred EEEEECCCChHHHHHHHHHHHCC-CeEEEEeC
Confidence 789999 8999999999887764 67776654
No 499
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=29.51 E-value=79 Score=28.43 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=25.7
Q ss_pred eEEEEccChHHHHHHHHHHcCCCceEEEEcC
Q 014424 91 KVGINGFGRIGRLVLRVAAFRDDVDVVAVND 121 (425)
Q Consensus 91 kVaInGfGrIGr~vlr~l~~~~~~evvaInd 121 (425)
++.|.|.|.-|+.+++.|.++ .+++++.-|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEc
Confidence 478999999999999999765 589888766
No 500
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=29.39 E-value=38 Score=31.86 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.8
Q ss_pred ceeEEEEccChHHHHHHHHHHcCC
Q 014424 89 NTKVGINGFGRIGRLVLRVAAFRD 112 (425)
Q Consensus 89 ~ikVaInGfGrIGr~vlr~l~~~~ 112 (425)
..||.|+|.|-+|..+++.|...+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~G 42 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAG 42 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcC
Confidence 459999999999999999997653
Done!