Query 014425
Match_columns 425
No_of_seqs 126 out of 147
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2735 Phosphatidylserine syn 100.0 7E-155 2E-159 1157.7 29.2 384 22-418 40-428 (466)
2 PLN02930 CDP-diacylglycerol-se 100.0 2E-149 5E-154 1115.9 33.8 352 41-392 1-353 (353)
3 PF03034 PSS: Phosphatidyl ser 100.0 1E-128 2E-133 945.1 28.4 280 104-386 1-280 (280)
4 PF04892 VanZ: VanZ like famil 55.7 38 0.00083 29.0 6.2 58 187-254 64-127 (133)
5 PF06781 UPF0233: Uncharacteri 43.7 1.2E+02 0.0026 25.9 7.1 54 36-90 27-82 (87)
6 PRK02251 putative septation in 37.5 1.7E+02 0.0036 25.2 7.0 62 26-90 18-82 (87)
7 PRK00159 putative septation in 37.2 2.1E+02 0.0045 24.6 7.5 62 27-90 19-82 (87)
8 PF06645 SPC12: Microsomal sig 35.9 50 0.0011 27.1 3.6 36 75-110 32-67 (76)
9 PF11457 DUF3021: Protein of u 27.6 2.4E+02 0.0053 24.5 6.8 33 106-138 101-133 (136)
10 PF07895 DUF1673: Protein of u 26.9 2.1E+02 0.0045 27.7 6.7 79 38-123 49-140 (205)
11 PF06197 DUF998: Protein of un 23.9 2.2E+02 0.0049 25.4 6.1 30 99-128 125-154 (184)
12 PF01102 Glycophorin_A: Glycop 23.5 1.1E+02 0.0023 27.7 3.8 36 388-424 60-95 (122)
13 KOG3415 Putative Rab5-interact 23.2 46 0.001 30.1 1.4 69 23-91 27-118 (129)
14 CHL00204 ycf1 Ycf1; Provisiona 21.6 1.5E+02 0.0033 37.3 5.6 66 42-113 81-150 (1832)
15 KOG1688 Golgi proteins involve 20.9 1.3E+02 0.0027 29.2 3.8 72 109-208 63-139 (188)
16 PF07860 CCD: WisP family C-Te 20.7 1.4E+02 0.0029 26.8 3.8 40 320-359 87-135 (141)
No 1
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=7.1e-155 Score=1157.73 Aligned_cols=384 Identities=51% Similarity=0.950 Sum_probs=365.8
Q ss_pred CCCCCCCCCCcccCCccceeecchHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhhHHHHHHHHhhhhccCCCCcc
Q 014425 22 NGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVL 101 (425)
Q Consensus 22 ~~~~~~~~~~~~~D~~~~ffykPhTit~L~~~~~~l~y~a~~~~~~~~~~~~~~n~~~G~~a~~~~Fl~~~~l~~pdgpf 101 (425)
.-+.+..+++.++|+|+||||||||||+|++++|.++|+|++.+. +++++.|+|||++|++++||++|++|||||||
T Consensus 40 ~~~~~~~ne~~vdDit~dffykphTiTlL~i~~~~l~y~a~~~~~---~~~t~~N~~rGil~~i~~FL~~svlafpngpF 116 (466)
T KOG2735|consen 40 KMHFRMINERVVDDITTDFFYKPHTITLLLILICFLIYKAFTGDT---ENTTETNVKRGILAMIAVFLIISVLAFPNGPF 116 (466)
T ss_pred hhccCccceeeeccchhhheecCceehHHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 556778888889999999999999999999999999999998764 44579999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCC--CCCCccccCCCceeeccCCCCccchhhhhcccc
Q 014425 102 IRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG--VELPERSYGADCRIYVHENPTSRFKNVYETLFD 179 (425)
Q Consensus 102 ~RPHPa~WR~V~g~~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg--~~l~eksYa~nC~i~tpe~p~~~f~ni~~~~~D 179 (425)
+|||||+||+|||+||+|+++|+|+||||.+|+||+|+|+||+|| .++|||+||.||++|+|| |+|++ +|
T Consensus 117 ~RPHPa~WR~vfg~SViYll~L~FlLFQ~~~d~r~~l~wldPkl~~~~~l~EkeYg~nC~~~spd-------ri~sh-~D 188 (466)
T KOG2735|consen 117 IRPHPALWRIVFGVSVIYLLFLQFLLFQTFDDIRQFLKWLDPKLGGQIELPEKEYGVNCSIYSPD-------RIWSH-LD 188 (466)
T ss_pred CCCCchHHHHHHHhHHHHHHHHHHHHHhhhHHHHhHheeeCcccCCCcccchhhhcCccccCCHH-------HHhhh-hh
Confidence 999999999999999999999999999999999999999999999 889999999999999875 47877 69
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHhhhhHHHHHHHHhhhhccCccce
Q 014425 180 EFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYE 259 (425)
Q Consensus 180 iF~~aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~mk~Y~ 259 (425)
+|++|||+||++||++|||+++||++||+||++|++|+|+||||+||||||||||||+|||+|||+||++||+|+||+|+
T Consensus 189 ~Fa~aHf~GW~mKalLIR~~~lcw~iSI~wEltE~~f~hlLPNFaECWWD~iILDVLiCNglGI~~Gmk~c~~L~mrty~ 268 (466)
T KOG2735|consen 189 IFAFAHFLGWAMKALLIRHWVLCWVISIMWELTELTFRHLLPNFAECWWDSIILDVLICNGLGIWAGMKTCRWLSMRTYH 268 (466)
T ss_pred hhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHheecccchhhhHhHHHhhhccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCcccchhhhccCcCCCccccccccCCCChhHHHHHHHHHHHHHHhhhhhhhhhhheecCCCCchHHHHHHHH
Q 014425 260 WVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILW 339 (425)
Q Consensus 260 W~g~~~i~~~~gK~kR~~~QFtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FFLK~~Lwipp~h~l~~~RL~l~ 339 (425)
|+|+++|||++||+||++.||||+||+++||+|.+|++|+++|+.++++||++|||||||||+|||||+||++++||++|
T Consensus 269 W~sik~i~t~~GK~KR~~lQFTPasW~~~~W~p~ss~~R~~~V~~lviiwlltELNTFFlKhvf~ipp~Hpvv~~RlIli 348 (466)
T KOG2735|consen 269 WESIKNIPTTRGKMKRAALQFTPASWSKFEWHPASSLRRFAAVYTLVIIWLLTELNTFFLKHVFWIPPKHPVVLWRLILI 348 (466)
T ss_pred eeeeccCcccchhHHHHhhccCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHheeEecCCCCceeehhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHHHHH---HHHHHHHHHH
Q 014425 340 WLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLAICIIELLICIKFGHGLYPNPMPLWLVIFWLCVGF---CLIAFLIIWS 416 (425)
Q Consensus 340 ~l~~~pa~rEyY~yitd~~~~krlG~~~Wl~~ai~~~E~li~iKfg~~~f~~p~P~~i~~~W~~~~~---~~~~~~~~~~ 416 (425)
+++++|++||||.|+||+.| ||+|+|||+++||+++|++||||||+++|+.+.+.+|++ |+..++ ..++|..+|.
T Consensus 349 ~~i~aptiRqyy~y~tD~~~-KrvG~qcWv~~aI~~~El~IciKfg~~~f~~t~~~~Ivl-w~l~~v~~t~~~v~~~v~~ 426 (466)
T KOG2735|consen 349 ALIAAPTIRQYYVYLTDKPC-KRVGMQCWVFLAICALELLICIKFGSHMFIKTQINYIVL-WLLMGVIGTFTCVLLAVWW 426 (466)
T ss_pred HhhccchHHHHHHHccCchh-hhcchhHHHHHHHHHHHhhhheeeCCceeeecchhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 999999999999999999999999999999999999755 987655 5566666664
Q ss_pred HH
Q 014425 417 YK 418 (425)
Q Consensus 417 ~~ 418 (425)
.+
T Consensus 427 ~~ 428 (466)
T KOG2735|consen 427 AE 428 (466)
T ss_pred Hh
Confidence 43
No 2
>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase
Probab=100.00 E-value=2.3e-149 Score=1115.89 Aligned_cols=352 Identities=91% Similarity=1.656 Sum_probs=344.8
Q ss_pred eecchHHHHHHHHHHHHHHHhcccCCCCC-CCCcccchhhhhHHHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHH
Q 014425 41 AYKPRTISFLLIGACFLIWASGALDPQSD-SGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 119 (425)
Q Consensus 41 fykPhTit~L~~~~~~l~y~a~~~~~~~~-~~~~~~n~~~G~~a~~~~Fl~~~~l~~pdgpf~RPHPa~WR~V~g~~vlY 119 (425)
+|||||||+|++++++++|++++++++++ +.|+++|+|||+.|++++|++||++|+|||||+||||||||+|+|++|+|
T Consensus 1 ~y~phTit~l~~~~~~l~~~~~a~~~~~~~~~~~~~n~~~Gv~a~i~~fl~~~~lq~pdg~f~RPHPa~WR~v~gl~vlY 80 (353)
T PLN02930 1 AYKPHTISLLLIGACFLIWASGALDPESTTSGDLVTSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 80 (353)
T ss_pred CCCCccHHHHHHHHHHHHheeccccCcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHH
Confidence 59999999999999999999888776544 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHcCCCCCCCCccccCCCceeeccCCCCccchhhhhcccchHHHHHHHHHHHHHHHHhhh
Q 014425 120 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQ 199 (425)
Q Consensus 120 ll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tpe~p~~~f~ni~~~~~DiF~~aH~~GW~~KaliiRd~ 199 (425)
+++|+||||||+|||||+||++|||||+++|||+||+||++||||||+|+|+||+|+++|+|++||++||++||+|+||+
T Consensus 81 l~~LvFLLFq~~~d~R~~l~~ldp~Lg~~lpE~~Y~~nC~~~tp~~p~~~~~ni~~~~~D~F~~aH~lGW~~KaliiRd~ 160 (353)
T PLN02930 81 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYTPEHPSSRFKNVYDTLFDEFVVAHILGWWGKAIMIRNQ 160 (353)
T ss_pred HHHHHHHHhccHHHHHHHHHhcChhhCCCCcccccccCceecCCCCcchhHHHhhhcccceehHHHHHHHHHHHHHHhcH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHhhhhHHHHHHHHhhhhccCccceeeecccCCCcccchhhhccC
Q 014425 200 PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQ 279 (425)
Q Consensus 200 ~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~mk~Y~W~g~~~i~~~~gK~kR~~~Q 279 (425)
++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|++++++++||+||++.|
T Consensus 161 ~l~w~~SI~FEl~Elsf~H~LPNF~ECWWDhiiLDVL~CN~lGI~lGm~~~k~l~~k~Y~W~g~~~~~~~~gk~kR~l~q 240 (353)
T PLN02930 161 PLLWVLSIGFELMELTFRHMLPNFNECWWDSIVLDVLICNWFGIWAGMHTVKYFDGKTYEWVGISRQPNIIGKVKRTLGQ 240 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchHHHHhHHHHHHHHHhhHHHHHHHHHHHHHcCCccccccccCCCCcccchhhhHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCChhHHHHHHHHHHHHHHhhhhhhhhhhheecCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 014425 280 FTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDRKP 359 (425)
Q Consensus 280 FtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FFLK~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yitd~~~ 359 (425)
|||+||++|+|++++|++|++++++++++++++|||+|||||+|||||+||+|++||++|+++|+||+||||+|++||++
T Consensus 241 FTP~sw~~~~W~~~~s~~rf~~v~~l~~~~~l~eLN~FFLK~~L~ipp~h~l~~~Rl~l~~~i~~~a~rEyY~yitd~~~ 320 (353)
T PLN02930 241 FTPAQWDKDEWHPLQGPWRFLQVLFLCVVFLTVELNTFFLKFCLWIPPRNPLIVYRLILWWLIAIPTIREYNSFLQDRKP 320 (353)
T ss_pred cCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 014425 360 VKKVGAFCWLSLAICIIELLICIKFGHGLYPNP 392 (425)
Q Consensus 360 ~krlG~~~Wl~~ai~~~E~li~iKfg~~~f~~p 392 (425)
.||+|+|||+++||+++|++||+|||+|+|++|
T Consensus 321 ~krlG~~~Wl~~ai~~~E~li~iK~g~~lf~~p 353 (353)
T PLN02930 321 VKKLGAFCWLSLAICIVELLICIKFGHGLFPKP 353 (353)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcccccCCC
Confidence 699999999999999999999999999999876
No 3
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=100.00 E-value=9.9e-129 Score=945.14 Aligned_cols=280 Identities=59% Similarity=1.179 Sum_probs=278.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCCCCCCccccCCCceeeccCCCCccchhhhhcccchHHH
Q 014425 104 PHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVL 183 (425)
Q Consensus 104 PHPa~WR~V~g~~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tpe~p~~~f~ni~~~~~DiF~~ 183 (425)
|||||||+|+|++|+|+++|+||||||+|||||+|+++||+||+++|||+||+||++++||||++. +||+|+ +|+|++
T Consensus 1 PHPa~WR~v~g~~v~Y~~~L~fllfq~~~~~r~~l~~~dp~Lg~~~~e~~Ya~nC~~~~~~~p~~~-~ni~~~-~D~f~~ 78 (280)
T PF03034_consen 1 PHPAFWRIVFGLSVLYLLFLVFLLFQNRDDARQILKYLDPSLGKPLPEKSYAENCRIYTPENPESP-HNIWDT-FDIFVL 78 (280)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCcccCCCCCCcCccCCCeeCCCCCCCcc-hhhHhh-cchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 999999 799999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHhhhhHHHHHHHHhhhhccCccceeeec
Q 014425 184 AHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGI 263 (425)
Q Consensus 184 aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~mk~Y~W~g~ 263 (425)
||++||++||+|+||+++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|+
T Consensus 79 aH~~GW~~Kali~Rd~~l~w~~Si~fE~~Elsf~h~LPnF~ECWWD~~iLDvl~CN~~Gi~~Gm~~~~~l~~k~Y~W~g~ 158 (280)
T PF03034_consen 79 AHFLGWFGKALILRDWWLCWILSIAFELLELSFQHLLPNFNECWWDHWILDVLICNGLGIWLGMKTCRYLEMKEYDWRGI 158 (280)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhccCcCCCccccccccCCCChhHHHHHHHHHHHHHHhhhhhhhhhhheecCCCCchHHHHHHHHHHHH
Q 014425 264 SRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIA 343 (425)
Q Consensus 264 ~~i~~~~gK~kR~~~QFtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FFLK~~Lwipp~h~l~~~RL~l~~l~~ 343 (425)
+++|+++||+||+++||||+|||+|+|++++|++|++++++++++++++|||+|||||+|||||+||+|++||++|+++|
T Consensus 159 ~~~~~~~gk~kr~~~QFtP~sw~~~~W~~~~s~~rf~~v~~l~~~~ll~ELN~FFLK~vLwIPp~H~Lv~~RL~l~~li~ 238 (280)
T PF03034_consen 159 RDIPTYRGKLKRALLQFTPYSWTKYEWKPFSSPKRFLQVLFLLIVFLLSELNTFFLKHVLWIPPSHPLVIYRLLLWFLIG 238 (280)
T ss_pred ccCCchhHHHHHHHHccCCCcCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHHHHhhCC
Q 014425 344 IPTIREYNSYLQDRKPVKKVGAFCWLSLAICIIELLICIKFGH 386 (425)
Q Consensus 344 ~pa~rEyY~yitd~~~~krlG~~~Wl~~ai~~~E~li~iKfg~ 386 (425)
+||+||||+|+|||++ ||+|+|||+++||+++|++||+|||+
T Consensus 239 ~pAiREyY~yitd~~~-krlG~~~Wl~~ai~~~E~LI~iKfg~ 280 (280)
T PF03034_consen 239 APAIREYYEYITDPNC-KRLGQQAWLLIAILFTELLICIKFGR 280 (280)
T ss_pred HHHHHHHHHHccCCcc-ccchhHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999987 99999999999999999999999995
No 4
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=55.72 E-value=38 Score=29.03 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHHHHh--hh----hHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHhhhhHHHHHHHHhhhhcc
Q 014425 187 FGWWGKAILIR--NQ----PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFD 254 (425)
Q Consensus 187 ~GW~~KaliiR--d~----~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~ 254 (425)
+|+..-...=| .+ .+|-..|++.|+. |-.+|.- ..= +-|+ ++|++|..+|..+.+.+.
T Consensus 64 lG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~----Q~~~~~r-~~d----~~Dv-~~n~~G~~lG~~l~~~~~ 127 (133)
T PF04892_consen 64 LGFLLPLLFRRLRSWLLAILIGFLFSLFIELI----QLFLPGR-SFD----IDDV-LANTLGALLGYLLYRLIR 127 (133)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHH----hccCCCC-CCC----HHHH-HHHHHHHHHHHHHHHHHH
Confidence 45555444432 33 3455666666665 6677755 222 3344 789999999998887664
No 5
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=43.68 E-value=1.2e+02 Score=25.89 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=29.1
Q ss_pred CccceeecchHHHHHHHHHHHH--HHHhcccCCCCCCCCcccchhhhhHHHHHHHHh
Q 014425 36 PWTAWAYKPRTISFLLIGACFL--IWASGALDPQSDSGDVVTSVKRGIWAMIAVFLT 90 (425)
Q Consensus 36 ~~~~ffykPhTit~L~~~~~~l--~y~a~~~~~~~~~~~~~~n~~~G~~a~~~~Fl~ 90 (425)
....=-|.|--+++++++++-+ .|.+...-+. -++=-.-|+-.|.-.+++.|++
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~p-i~~lG~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPP-IPDLGNWNLAIGFGLMIVGFLM 82 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCCCCC-cccccchHHHHHHHHHHHHHHH
Confidence 3443446999888888877533 3333211010 0111135888887777666654
No 6
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=37.49 E-value=1.7e+02 Score=25.17 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCCCCCc-ccCCccceeecchHHHHHHHHHHH--HHHHhcccCCCCCCCCcccchhhhhHHHHHHHHh
Q 014425 26 DTSSGSD-ELDPWTAWAYKPRTISFLLIGACF--LIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLT 90 (425)
Q Consensus 26 ~~~~~~~-~~D~~~~ffykPhTit~L~~~~~~--l~y~a~~~~~~~~~~~~~~n~~~G~~a~~~~Fl~ 90 (425)
++.++.+ ...++=.| |.|--+.+++++++- +.|.+.. +-+ -++=-.-|.-.|.-..++.|++
T Consensus 18 ~r~~~k~~~~~~sP~W-~~~~m~~lm~~Gl~WlvvyYl~~~-~~P-~~~lG~WN~~IGfg~~~~G~~m 82 (87)
T PRK02251 18 KRAEESIKGTKSNPRW-FVPLFVALMIIGLIWLVVYYLSNG-SLP-IPALGAWNLVIGFGLIMAGFGM 82 (87)
T ss_pred cCCccccccCCCCCch-HHHHHHHHHHHHHHHHHHHhhhCC-CcC-cccccchhHHHHHHHHHHHHHH
Confidence 3344444 33444455 588888888877753 3334321 111 1111235777776655555543
No 7
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=37.20 E-value=2.1e+02 Score=24.62 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=31.2
Q ss_pred CCCCCcccCCccceeecchHHHHHHHHHHH--HHHHhcccCCCCCCCCcccchhhhhHHHHHHHHh
Q 014425 27 TSSGSDELDPWTAWAYKPRTISFLLIGACF--LIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLT 90 (425)
Q Consensus 27 ~~~~~~~~D~~~~ffykPhTit~L~~~~~~--l~y~a~~~~~~~~~~~~~~n~~~G~~a~~~~Fl~ 90 (425)
+.+..++.-++=.| |.|--+.+++++++- +.|.+.. +-+--++=-.-|.-.|.-..++.|++
T Consensus 19 rtpvk~~~~~sp~W-~~~~m~glm~~GllWlvvyYl~~~-~~P~m~~lG~WN~~IGFg~~i~G~lm 82 (87)
T PRK00159 19 RTPVKVKAGPSSVW-YVVLMLGLMLIGLAWLVVNYLAGP-AIPWMADLGPWNYAIGFALMITGLLM 82 (87)
T ss_pred CCCccccCCCCCcc-HHHHHHHHHHHHHHHHHHHhhccC-CCCCCcccCchhHHHHHHHHHHHHHH
Confidence 34444443333344 588888888877753 3334321 11100111235777776666555543
No 8
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.92 E-value=50 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.8
Q ss_pred cchhhhhHHHHHHHHhhhhccCCCCcccCCChhHHH
Q 014425 75 TSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWR 110 (425)
Q Consensus 75 ~n~~~G~~a~~~~Fl~~~~l~~pdgpf~RPHPa~WR 110 (425)
++.+..+.+..+.+++-.++..||=|+-|-||.=|.
T Consensus 32 q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~ 67 (76)
T PF06645_consen 32 QSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWL 67 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCC
Confidence 456777777777777777888999999999998774
No 9
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=27.61 E-value=2.4e+02 Score=24.47 Aligned_cols=33 Identities=9% Similarity=0.263 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014425 106 PAIWRLVHGMAVVYLVALTFLLFQKRDDARQFM 138 (425)
Q Consensus 106 Pa~WR~V~g~~vlYll~LvFLLFQ~~~daR~~l 138 (425)
++++-......++|++.-...-.|++.|+|++=
T Consensus 101 ~~~~~~~~~fi~IYliIw~~~y~~~k~~i~kiN 133 (136)
T PF11457_consen 101 ISLLIFILIFIIIYLIIWLIFYLYWKKDIKKIN 133 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777888889999999999999999999873
No 10
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=26.93 E-value=2.1e+02 Score=27.66 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=45.3
Q ss_pred cceeecchHHHHHHHHHHHHHHHhcccCCCCCCCCcccchhhhhHHHHHHHHhhhhcc----------CCCCcccCCChh
Q 014425 38 TAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQ----------APSTVLIRPHPA 107 (425)
Q Consensus 38 ~~ffykPhTit~L~~~~~~l~y~a~~~~~~~~~~~~~~n~~~G~~a~~~~Fl~~~~l~----------~pdgpf~RPHPa 107 (425)
..|+.|-|+-+++.-....++|+-.... ..-|...|++++.++.+.+++.. ....|.+|++.-
T Consensus 49 ~~~~~~~~~~~Ll~~~f~T~~~~L~i~~-------~gin~~~~ll~g~~~~L~~~i~~wk~~~~~~d~i~k~~v~~~~~k 121 (205)
T PF07895_consen 49 PGWFRKRSNRILLINIFFTLVYFLVISQ-------LGINLHLFLLAGLILSLYLYIFSWKKQMIRYDDIAKKPVIRNSNK 121 (205)
T ss_pred cceeeeccceeeHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccch
Confidence 3788777777767666555555421111 11233366777777666666654 345788888776
Q ss_pred ---HHHHHHHHHHHHHHHH
Q 014425 108 ---IWRLVHGMAVVYLVAL 123 (425)
Q Consensus 108 ---~WR~V~g~~vlYll~L 123 (425)
+|-+...+..++++..
T Consensus 122 ~~~~~~l~~i~~~i~l~~~ 140 (205)
T PF07895_consen 122 KKRFRLLLVIILLIILVMF 140 (205)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555555444433
No 11
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=23.86 E-value=2.2e+02 Score=25.43 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=15.3
Q ss_pred CcccCCChhHHHHHHHHHHHHHHHHHHHhc
Q 014425 99 TVLIRPHPAIWRLVHGMAVVYLVALTFLLF 128 (425)
Q Consensus 99 gpf~RPHPa~WR~V~g~~vlYll~LvFLLF 128 (425)
....|+.++.-|...+++++=...+..+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T PF06197_consen 125 SLRRRRRWARRRLFSAVALLLFVALLLLFL 154 (184)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444444433
No 12
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.55 E-value=1.1e+02 Score=27.69 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=18.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014425 388 LYPNPMPLWLVIFWLCVGFCLIAFLIIWSYKSLERKR 424 (425)
Q Consensus 388 ~f~~p~P~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~ 424 (425)
-|+.+--.. +++..++++..++.++.+..||+++|.
T Consensus 60 ~fs~~~i~~-Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 60 RFSEPAIIG-IIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SSS-TCHHH-HHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred Cccccceee-hhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455443233 445555666666666666667666653
No 13
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.20 E-value=46 Score=30.05 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=43.7
Q ss_pred CCCCCCCCCcccCCccceeecchHHHHHHHHHH----------------------HHHHHhcccCCCCCC-CCcccchhh
Q 014425 23 GDTDTSSGSDELDPWTAWAYKPRTISFLLIGAC----------------------FLIWASGALDPQSDS-GDVVTSVKR 79 (425)
Q Consensus 23 ~~~~~~~~~~~~D~~~~ffykPhTit~L~~~~~----------------------~l~y~a~~~~~~~~~-~~~~~n~~~ 79 (425)
.-.+...+=++-|.-+|-.|=-+++..|+.+++ +-.|++.+.+-|+++ ...-+=+|-
T Consensus 27 kl~~~da~W~DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~kE 106 (129)
T KOG3415|consen 27 KLTDSDAEWPDKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELLKE 106 (129)
T ss_pred hcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHHHH
Confidence 444444455555667788888888877765431 224566555444432 334456899
Q ss_pred hhHHHHHHHHhh
Q 014425 80 GIWAMIAVFLTY 91 (425)
Q Consensus 80 G~~a~~~~Fl~~ 91 (425)
|..++.+.|++-
T Consensus 107 Gf~asfa~Flvt 118 (129)
T KOG3415|consen 107 GFMASFALFLVT 118 (129)
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 14
>CHL00204 ycf1 Ycf1; Provisional
Probab=21.57 E-value=1.5e+02 Score=37.29 Aligned_cols=66 Identities=24% Similarity=0.381 Sum_probs=32.3
Q ss_pred ecchHHHHHHHHHHHH--HHHhc--ccCCCCCCCCcccchhhhhHHHHHHHHhhhhccCCCCcccCCChhHHHHHH
Q 014425 42 YKPRTISFLLIGACFL--IWASG--ALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVH 113 (425)
Q Consensus 42 ykPhTit~L~~~~~~l--~y~a~--~~~~~~~~~~~~~n~~~G~~a~~~~Fl~~~~l~~pdgpf~RPHPa~WR~V~ 113 (425)
-||||||+|++--+.. .|.-. .++. +++..|.-|-+-.-++ ||-=-++|+= .||+=|-|.+=|+|.
T Consensus 81 gRPHtITvL~lPYllFhffw~n~K~ff~y----~stt~nSmrn~~iq~v-FlnnlifQl~-N~~iLpss~LaRLvn 150 (1832)
T CHL00204 81 GRPHTITVLALPYLLFHFFWNNHKHFFDY----GSTTRNSMRNLSIQCV-FLNNLIFQLF-NHFILPSSMLARLVN 150 (1832)
T ss_pred cCchhhHHHHHHHHHHHHHHhcCCCcccc----CCCccccccchhHHHH-HHhhHHHHHh-hHhhcccHHHHHHHH
Confidence 5899999887644333 22111 1111 1222233332222222 3222222333 478889999988874
No 15
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=1.3e+02 Score=29.16 Aligned_cols=72 Identities=28% Similarity=0.388 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCC-----CCCCccccCCCceeeccCCCCccchhhhhcccchHHH
Q 014425 109 WRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG-----VELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVL 183 (425)
Q Consensus 109 WR~V~g~~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg-----~~l~eksYa~nC~i~tpe~p~~~f~ni~~~~~DiF~~ 183 (425)
|=+|--..-+|++= .|+.|.++. .||+++ ..||++ .+++|.-+.+.+ -+|=+
T Consensus 63 ~YII~Y~LgIYlLN-lfiaFLtPk--------~Dp~~~~~~dg~~Lpt~-------------~~dEFrPFIRRL-PEFKF 119 (188)
T KOG1688|consen 63 FYIITYALGIYLLN-LFIAFLTPK--------VDPELQDADDGPSLPTR-------------KSDEFRPFIRRL-PEFKF 119 (188)
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCC--------CCchhhcccCCCCCCCC-------------CccccchHHHcC-chhHH
Confidence 34444444445543 355666665 788884 223333 233455555553 55433
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 014425 184 AHIFGWWGKAILIRNQPLLWLLSIG 208 (425)
Q Consensus 184 aH~~GW~~KaliiRd~~l~w~~SI~ 208 (425)
=+. ..||.++= .+|-+.|+.
T Consensus 120 W~s---~~ka~~ia--~~~tfF~~f 139 (188)
T KOG1688|consen 120 WYS---STKATLIA--LLCTFFSIF 139 (188)
T ss_pred HHH---HHHHHHHH--HHHHHHHHh
Confidence 222 23555543 556666554
No 16
>PF07860 CCD: WisP family C-Terminal Region; InterPro: IPR012421 This entry represents the C-terminal domain found in the Tropheryma whipplei WisP family of proteins [].
Probab=20.74 E-value=1.4e+02 Score=26.81 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=27.1
Q ss_pred hhheecCCCCchHHHHHHHHHHHH---------HHHHHHHHHhhcCCCC
Q 014425 320 KFCLWVPPRNPVIIYRLILWWLIA---------IPTIREYNSYLQDRKP 359 (425)
Q Consensus 320 K~~Lwipp~h~l~~~RL~l~~l~~---------~pa~rEyY~yitd~~~ 359 (425)
|---+-||+||+-..---+=..-| ..+.+.++.|++|...
T Consensus 87 krdtqkppehplksvneqiktvtgavnnfqksvltslkdfftyltdta~ 135 (141)
T PF07860_consen 87 KRDTQKPPEHPLKSVNEQIKTVTGAVNNFQKSVLTSLKDFFTYLTDTAH 135 (141)
T ss_pred eccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 334466888888776554444333 3578999999999753
Done!