Query 014425
Match_columns 425
No_of_seqs 126 out of 147
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:21:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_B Na+,K+-ATPase beta subu 9.5 2.3E+02 0.0077 27.9 3.9 54 37-106 13-84 (305)
2 1uwd_A Hypothetical protein TM 9.4 1.8E+02 0.0061 23.2 2.6 30 130-159 7-37 (103)
3 1jb0_J Photosystem 1 reaction 7.6 3.4E+02 0.012 19.4 3.0 18 301-318 16-33 (41)
4 1wex_A Hypothetical protein (r 7.5 1.6E+02 0.0054 23.5 1.5 44 124-167 54-100 (104)
5 2l8s_A Integrin alpha-1; trans 6.6 6.8E+02 0.023 18.7 4.5 34 391-424 5-40 (54)
6 3qsd_A Cathepsin B-like peptid 6.6 6.9E+02 0.024 22.7 5.6 39 347-386 9-50 (254)
7 1pxv_A Cysteine protease; hydr 6.0 2.5E+02 0.0087 25.8 2.2 20 132-151 51-71 (183)
8 1pi7_A VPU protein, U ORF prot 5.7 5.6E+02 0.019 17.6 3.3 19 405-423 16-35 (36)
9 1jb0_K Photosystem 1 reaction 5.6 1.6E+02 0.0054 24.0 0.5 22 231-252 15-36 (83)
10 2ks1_B Epidermal growth factor 5.4 2.8E+02 0.0096 19.8 1.7 28 397-424 17-44 (44)
No 1
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=9.54 E-value=2.3e+02 Score=27.85 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=21.0
Q ss_pred ccceeecchHHHHHH-----HHHHHHHHHhcccCCCCCCCCcccchhhhhHHHHHHHHhhhhccC-------------CC
Q 014425 37 WTAWAYKPRTISFLL-----IGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQA-------------PS 98 (425)
Q Consensus 37 ~~~ffykPhTit~L~-----~~~~~l~y~a~~~~~~~~~~~~~~n~~~G~~a~~~~Fl~~~~l~~-------------pd 98 (425)
.-.|+|.|.|=++|. =+-+++.|.++ .|++|+++.+++..++|. +-
T Consensus 13 ~k~f~~n~~~~~~lGRT~~sW~~IllFYliF----------------Y~~La~lF~~~m~v~l~tl~~~~Pk~q~~i~~P 76 (305)
T 2zxe_B 13 WKKFLWDSEKKEFLGRTGSSWFKIFLFYLIF----------------YGCLAGIFIGTIQVLLLTLSDFEPKYQDRVAPP 76 (305)
T ss_dssp ---------------CCSTTHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHTSCSSSCSCCTTTCSC
T ss_pred hhhheeCcccCeEecccHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHccccCCccccCCCCC
Confidence 457999998877664 11233444443 235555555555555443 33
Q ss_pred CcccCCCh
Q 014425 99 TVLIRPHP 106 (425)
Q Consensus 99 gpf~RPHP 106 (425)
|.-.||.|
T Consensus 77 GL~~~P~~ 84 (305)
T 2zxe_B 77 GLSHAPYA 84 (305)
T ss_dssp CBCCSSCC
T ss_pred eeeEecCC
Confidence 88999998
No 2
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=9.35 E-value=1.8e+02 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred ChHHHHHHHH-HHcCCCCCCCCccccCCCce
Q 014425 130 KRDDARQFMK-FLHPDLGVELPERSYGADCR 159 (425)
Q Consensus 130 ~~~daR~~l~-~ldP~Lg~~l~eksYa~nC~ 159 (425)
+.+++++.|+ ..||++|..+.+-..=.+++
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~ 37 (103)
T 1uwd_A 7 TKEDVLNALKNVIDFELGLDVVSLGLVYDIQ 37 (103)
T ss_dssp CHHHHHHHHTTCBCTTTSSBTTTTTCCCCEE
T ss_pred hHHHHHHHHcCCCCCCCCcChhhcCCeeEEE
Confidence 5788999997 55999999887754333343
No 3
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=7.55 E-value=3.4e+02 Score=19.35 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 014425 301 QVLTLCIIFLTVELNTFF 318 (425)
Q Consensus 301 ~v~~l~~~~ll~ELN~FF 318 (425)
.+.+-...-++.|.|.||
T Consensus 16 ~~w~~~tAg~lIEiNRff 33 (41)
T 1jb0_J 16 AIWMTITAGILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 333445667789999998
No 4
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=7.53 E-value=1.6e+02 Score=23.51 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHhccChHHHHHHHHHHcC---CCCCCCCccccCCCceeeccCCCC
Q 014425 124 TFLLFQKRDDARQFMKFLHP---DLGVELPERSYGADCRIYVHENPT 167 (425)
Q Consensus 124 vFLLFQ~~~daR~~l~~ldP---~Lg~~l~eksYa~nC~i~tpe~p~ 167 (425)
.|.-|.+.++|.+.++.++- .++...-.-+|+..=.+..|.|+.
T Consensus 54 aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~~~~ 100 (104)
T 1wex_A 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSG 100 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCSC
T ss_pred EEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccCCCCCC
Confidence 67889999999999998852 353332345677666666666554
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=6.59 E-value=6.8e+02 Score=18.66 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHHHHHH--HHHHHHHHHHHhhhh
Q 014425 391 NPMPLWLVIFWLCVGFCLI--AFLIIWSYKSLERKR 424 (425)
Q Consensus 391 ~p~P~~i~~~W~~~~~~~~--~~~~~~~~~~~~~~~ 424 (425)
.+.|.++++.=++++.++. +-.+.|..-=+|||+
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3457777666655554333 234556555666665
No 6
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=6.58 E-value=6.9e+02 Score=22.74 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=26.7
Q ss_pred HHHHH---HhhcCCCCccccchhHHHHHHHHHHHHHHHHhhCC
Q 014425 347 IREYN---SYLQDRKPVKKVGAFCWLSLAICIIELLICIKFGH 386 (425)
Q Consensus 347 ~rEyY---~yitd~~~~krlG~~~Wl~~ai~~~E~li~iKfg~ 386 (425)
.|+.+ .+++..+...+-| -||-+.++-.+|..+++|-+.
T Consensus 9 ~R~~~~~~~~vtpVkdQg~CG-SCWAFaa~~ale~~~~i~~~~ 50 (254)
T 3qsd_A 9 SRKKWPRCKSIATIRDQSRCG-SCWAFGAVEAMSDRSCIQSGG 50 (254)
T ss_dssp HHHHCTTCGGGGCCCBCCSSB-CHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCCCCccCCCCCcccCc-cHHHHHHHHHHHHHHHHHhCC
Confidence 45553 3555443223344 499999999999999999764
No 7
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=5.97 E-value=2.5e+02 Score=25.84 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCC-CCCCc
Q 014425 132 DDARQFMKFLHPDLG-VELPE 151 (425)
Q Consensus 132 ~daR~~l~~ldP~Lg-~~l~e 151 (425)
-.|+++|+.+.|++. ++++.
T Consensus 51 ~nA~~iMr~~yPN~s~~~l~~ 71 (183)
T 1pxv_A 51 YNAHDIMRTLYPEVSEQDLPN 71 (183)
T ss_dssp CCHHHHHHHHSTTSCTTTGGG
T ss_pred CCHHHHHHHHCCCCChhHHhh
Confidence 359999999999995 44543
No 8
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=5.72 E-value=5.6e+02 Score=17.60 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH-HHHhhh
Q 014425 405 GFCLIAFLIIWSY-KSLERK 423 (425)
Q Consensus 405 ~~~~~~~~~~~~~-~~~~~~ 423 (425)
+...++|++++.. |+++|.
T Consensus 16 IiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 16 IIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 3466778776654 555443
No 9
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=5.61 E-value=1.6e+02 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.541 Sum_probs=13.8
Q ss_pred HHHHHHhhhhHHHHHHHHhhhh
Q 014425 231 IILDILICNWFGIWAGMHTVRY 252 (425)
Q Consensus 231 ~iLDVL~CN~lGI~lGm~~~~~ 252 (425)
+=+=..+||.+.|.+|-.+.|+
T Consensus 15 v~iIMI~cN~lai~igk~~I~~ 36 (83)
T 1jb0_K 15 VGLVVILCNLFAIALGRYAIQS 36 (83)
T ss_dssp -----CHHHHHHHHHHHC-CCC
T ss_pred cceeehhHHHHHHHHHHHHHcC
Confidence 3344579999999999887743
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.41 E-value=2.8e+02 Score=19.79 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014425 397 LVIFWLCVGFCLIAFLIIWSYKSLERKR 424 (425)
Q Consensus 397 i~~~W~~~~~~~~~~~~~~~~~~~~~~~ 424 (425)
|+..=++..++...+..++-.|+.|+||
T Consensus 17 VVgGv~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHhhccC
Done!