BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014426
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RH9|A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon
Esculentum (Tomato)
Length = 373
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 211/375 (56%), Positives = 283/375 (75%), Gaps = 7/375 (1%)
Query: 19 ADDGFITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMART 78
+++ F+ G H LNG Y NGFNAYWLM +P + KV++ FQQA ++ +++ART
Sbjct: 2 SNNNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVART 61
Query: 79 WAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNW 138
WAFS GG PLQ +PG YNEQMFQGLDFVISEA+KYGI L++S+VNN+D FGGKKQYV W
Sbjct: 62 WAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEW 121
Query: 139 ARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRC 198
A +GQ ++SDDDFFTN +VK +YKN++K VLTR+NT+T VAYKD+PTI++WEL+NEPRC
Sbjct: 122 AVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRC 181
Query: 199 YADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPN-FQVGTDFIA 257
+D SGKT Q W+ EMA Y+KSID NHLLE GLEGFYG ++ +QYNPN + GT+FI+
Sbjct: 182 PSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYG---NDMRQYNPNSYIFGTNFIS 238
Query: 258 NNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSL 317
NNQ+ GIDF T+H YP+QWLP + E+Q + + W+ HI D++ L+KP+L+AEFGKS
Sbjct: 239 NNQVQGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSK-MLKKPLLIAEFGKST 297
Query: 318 KTSG--ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTEGLDSYRDGYEVIFSENPS 375
KT G +RD F+ +Y I+ A+SGG GG+FWQ+ +G+ S+ DGY+V+ E+PS
Sbjct: 298 KTPGYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPS 357
Query: 376 TATIITDQSQKLNRL 390
T+ +I QS +L++L
Sbjct: 358 TSRVILLQSLRLSKL 372
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 203/394 (51%), Gaps = 45/394 (11%)
Query: 24 ITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSD 83
+ +G H MLNG F G N Y+ M+ +N + SV + A++ G+ + R W F D
Sbjct: 14 LVPRGSH-MLNGKEFRFIGSNNYY-MHYKSN----RMIDSVLESARDMGIKVLRIWGFLD 67
Query: 84 G------GDSPLQYSPGSYN--------EQMFQGLDFVISEARKYGIKLVLSMVNNYDQF 129
G ++ + PG + + F+ LD+ I++A++ GIKL++ +VNN+D F
Sbjct: 68 GESYCRDKNTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLIIVLVNNWDDF 127
Query: 130 GGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMA 189
GG QYV W G + DDF+ + +K+ YK ++ ++ +N TGV Y++EPTIMA
Sbjct: 128 GGMNQYVRWFGG-----THHDDFYRDERIKEEYKKYVSFLINHVNVYTGVPYREEPTIMA 182
Query: 190 WELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYG------PSSSEKQ 243
WEL NE RC D SG T+ W+ EM+SY+KS+D NHL+ G EGF+ P E
Sbjct: 183 WELANELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGDEGFFSNYEGFKPYGGE-A 241
Query: 244 QYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDT 303
++ N G D+ I +DF T H YP W S E+ + W+ +HI+ A++
Sbjct: 242 EWAYNGWSGVDWKKLLSIETVDFGTFHLYPSHW--GVSPENYAQWGAKWIEDHIKIAKE- 298
Query: 304 LRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTEGLDSYR 363
+ KP++L E+G + S R ++ +Y GG G MFW L G S R
Sbjct: 299 IGKPVVLEEYG--IPKSAPVNRTAIYRLWNDLVY---DLGGD--GAMFWMLAGIGEGSDR 351
Query: 364 DGYEVIFSENPSTATIITDQSQKLNRLRKMYVRL 397
D E + + I+ D S + +R+ Y +L
Sbjct: 352 D--ERGYYPDYDGFRIVNDDSPEAELIRE-YAKL 382
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 185/417 (44%), Gaps = 73/417 (17%)
Query: 18 KADDGFITAKGVHLMLNGSPFYANGFNAYWLMNTGANPY-LKDKVSSVFQQAKEHGLSMA 76
K GF+T +G H L+G FY G NAY+ P+ + + A+ GL++
Sbjct: 1 KVPKGFVTTEGDHFKLDGKDFYFAGSNAYYF------PFNDQPDIEKGMTAARAAGLTVF 54
Query: 77 RTWAFSDGGDSPL-----QYS---PGSYNEQMFQ-------------GLDFVISEARKYG 115
RTW F+D + + QY G +FQ D V+ A K G
Sbjct: 55 RTWGFNDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKTG 114
Query: 116 IKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINT 175
IKL++++ NN+ +GG Y G+ DDF+T +K+ +K ++K ++TR
Sbjct: 115 IKLIVALTNNWADYGGMDVYTVNLGGKYH-----DDFYTVPKIKEAFKRYVKAMVTR--- 166
Query: 176 VTGVAYKDEPTIMAWELMNEPRCYAD-----------PSGKTIQAWITEMASYVKSIDGN 224
Y+D I+AWEL NE RC AD + +T+ WI EM++YVKS+DGN
Sbjct: 167 -----YRDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGN 221
Query: 225 HLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDES 284
HL+ G EG + E+ + N G DF + +DF T+H YPD W S
Sbjct: 222 HLVTWGGEGGFNRGEDEEDGFY-NGADGGDFDRELGLRNVDFGTMHLYPDWWSKS----- 275
Query: 285 QTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARSGG 344
+ N W+++H + KP++L E+G +Q Q V + L G
Sbjct: 276 -IEWSNQWIHDHAASGR-AANKPVVLEEYGWMTDKGRLDQLGQ----VKNETRLEVVGGW 329
Query: 345 AAV-------GGMFWQLFTEGLDSYR--DGYEVIFSENPSTATIITDQSQKLNRLRK 392
+ G M+WQ G R D I+ E+ ++ ++K+ +L +
Sbjct: 330 QKIAIQEKLAGDMYWQFGYGGYSYGRNHDDSFTIYLEDDEAKELVYKHAKKVQKLNE 386
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 161/369 (43%), Gaps = 62/369 (16%)
Query: 23 FITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDK--VSSVFQQAKEHGLSMARTWA 80
F+T G ++G Y G N YW +L + V S F GL + R W
Sbjct: 4 FVTISGTQFNIDGKVGYFAGTNCYWC------SFLTNHADVDSTFSHISSSGLKVVRVWG 57
Query: 81 FSDGGDSPLQYSPG--------------SYNEQMFQGLDFVISEARKYGIKLVLSMVNNY 126
F+D P SPG + Q LD+V+ A ++ +KL++ VNN+
Sbjct: 58 FNDVNTQP---SPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNW 114
Query: 127 DQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPT 186
+GG YVN G + ++TN+ + Y+ +++ V++R Y +
Sbjct: 115 SDYGGINAYVNAFGGNATT------WYTNTAAQTQYRKYVQAVVSR--------YANSTA 160
Query: 187 IMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYN 246
I AWEL NEPRC + +Q W T ++ YVKS+D NHL+ G EG G S+ + Y
Sbjct: 161 IFAWELGNEPRCNGCSTDVIVQ-WATSVSQYVKSLDSNHLVTLGDEGL-GLSTGDG-AYP 217
Query: 247 PNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRK 306
+ GTDF N QI +DF T H YPD W + ++ N W+ H A K
Sbjct: 218 YTYGEGTDFAKNVQIKSLDFGTFHLYPDSW------GTNYTWGNGWIQTHAA-ACLAAGK 270
Query: 307 PILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQ---LFTEGLDSYR 363
P + E+ GA Q + + L+ R G G MFWQ F G S
Sbjct: 271 PCVFEEY-------GAQQNPCTNEAPWQTTSLTTRGMG---GDMFWQWGDTFANGAQSNS 320
Query: 364 DGYEVIFSE 372
D Y V ++
Sbjct: 321 DPYTVWYNS 329
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 165/373 (44%), Gaps = 55/373 (14%)
Query: 19 ADDGFITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYL--KDKVSSVFQQAKEHGLSMA 76
A + F+ G H L G P+ G N ++ GA + +D+++ K G++
Sbjct: 20 AHEHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNL 79
Query: 77 RTWAFSDGGDSPLQYSP------GSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFG 130
R A S+ + P G+Y+E + QGLD+++ E K + +VL N + G
Sbjct: 80 RVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSG 139
Query: 131 GKKQYVNWARGQGQS-----------ISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGV 179
G QY+ W G+ ++ F+ + +Q Y+ ++ ++TR+N++ G
Sbjct: 140 GMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRVNSINGK 199
Query: 180 AYKDEPTIMAWELMNEPRCYADPSGKTIQA--------WITEMASYVKSIDGNHLLEAGL 231
AY D+ TIM+W+L NEPR P A W+ A+Y+K++D +HL+ +G
Sbjct: 200 AYVDDATIMSWQLANEPR----PGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGS 255
Query: 232 EGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLH------SYPDQWLPSSSDESQ 285
EG G + + QV FI + P ID+ T H S+ D+ P+ + S
Sbjct: 256 EGEMGSVN--------DMQV---FIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWPSA 304
Query: 286 TSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKT------SGANQRDQLFDTVYSAIYLS 339
N++ HI D L KP++L EFG S RD F V+ + S
Sbjct: 305 WEKAQNYMRAHI-DVAKQLNKPLVLEEFGLDRDMGSYAMDSTTEYRDNYFRGVFELMLAS 363
Query: 340 ARSGGAAVGGMFW 352
G + G W
Sbjct: 364 LEQGEPSAGYNIW 376
>pdb|3VUP|A Chain A, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
pdb|3VUP|B Chain B, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
Length = 351
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 83/387 (21%), Positives = 142/387 (36%), Gaps = 103/387 (26%)
Query: 30 HLMLNGSPFYANGFNAYWL-----MNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDG 84
H +LNG + +G N W+ G K+++ F++ + G + R W G
Sbjct: 8 HFVLNGQRVFLSGGNLPWMSYAYDFGDGQWQRNKNRIEPEFKKLHDAGGNSMRLWIHIQG 67
Query: 85 GDSPLQYSPGSYNEQ-----------MFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKK 133
+P ++N+Q M + ++ A+KY I + + N
Sbjct: 68 ETTP------AFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCLWN--------- 112
Query: 134 QYVNWARGQGQSISSDDDFFTNSVVKQYYK--NHIKTVLTRI-NTVTGVAYKDEPTIMAW 190
+++ D + ++K +K ++I L I N V G + W
Sbjct: 113 ----------AAVNQDSHNRLDGLIKDQHKLQSYIDKALKPIVNHVKG-----HVALGGW 157
Query: 191 ELMNEP------------RCYADPSGKT--------------IQAWITEMASYVKSIDGN 224
+LMNEP +CY + K I ++ A +K+ D
Sbjct: 158 DLMNEPEGMMIPDKHNAEKCYDTTALKNSGAGWAGNKYLYQDILRFLNWQADAIKTTDPG 217
Query: 225 HLLEAGLEGFYGP-SSSEKQQYNPNFQVGTDFIANNQIPGI-DFATLHSYPDQWLPSSSD 282
L+ G+ + P S+++ N ++ +A + G+ DF HSY Q D
Sbjct: 218 ALVTMGV---WNPKSNTDHFNMNNHYSDHCLRLAGGKQKGVFDFYQFHSYSWQ---GKWD 271
Query: 283 ESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARS 342
E + H Q + L KPI++ EF + + G Q+F+ VY+ Y A S
Sbjct: 272 EVAP-------FTH-QASDYGLHKPIVVGEFWE--QDGGGMTITQMFNYVYNHGYAGAWS 321
Query: 343 GGAAVGGMFWQLFTEGLDSYRDGYEVI 369
W L G D+ R G I
Sbjct: 322 ---------WHLVQRG-DNQRKGITNI 338
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 31/188 (16%)
Query: 24 ITAKGVHLMLNGSPFYANGFNAYWL---MNTGANPYLKDKVS--SVFQQAKEHGLSMART 78
++ G +L NG + +G N W+ + G N Y K K + S + HG + R
Sbjct: 5 LSVSGTNLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRV 64
Query: 79 WAFSDGGDSPLQYSPGSY----NEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQ 134
W +G +P ++ Y + + + + A+++ I + ++ N G KQ
Sbjct: 65 WLHIEGESTP-EFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTLWN-----GAVKQ 118
Query: 135 YVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMN 194
++ + ++ Q Y +H + A K+E + W++MN
Sbjct: 119 STHYRL---------NGLMVDTRKLQSYIDHALKPMAN-------ALKNEKALGGWDIMN 162
Query: 195 EPRCYADP 202
EP P
Sbjct: 163 EPEGEIKP 170
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 101/272 (37%), Gaps = 77/272 (28%)
Query: 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN-------EQMFQGLDFVISEARKYGIK 117
F KE G S R P+++S +Y ++ F+ +D VI+ A K G+
Sbjct: 39 FDIIKEAGFSHVRI---------PIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLA 89
Query: 118 LVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177
+V++ +++Y++ + H + L +
Sbjct: 90 VVIN-IHHYEELMNDPE-----------------------------EHKERFLALWKQIA 119
Query: 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAW---ITEMASYVKSIDGNHLLEAGLEGF 234
YKD P + +E++NEP P + W + E ++SID H + G +
Sbjct: 120 D-RYKDYPETLFFEILNEPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEW 173
Query: 235 YGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQ---WLPSS---------SD 282
G S+ EK P ++ N I I + + Q W+ S S
Sbjct: 174 GGISALEKLSV-PKWE-------KNSIVTIHYYNPFEFTHQGAEWVEGSEKWLGRKWGSP 225
Query: 283 ESQTSFLNNWLYNHIQDAQDTLRKPILLAEFG 314
+ Q + +N I++ ++PI + EFG
Sbjct: 226 DDQKHLIEE--FNFIEEWSKKNKRPIYIGEFG 255
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 13/128 (10%)
Query: 101 FQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWAR----GQGQSISSDDDFFTNS 156
F LD +I K I L L+ K+Y + R G+ + + NS
Sbjct: 59 FTWLDDIIERLTKENIYLCLATSTGAHPAWMAKKYPDVLRVDYEGRKRKFGGRHNSCPNS 118
Query: 157 VVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNE--PRCYADPSGKTIQAWITEM 214
Y+ + K + ++ YKD P I+ W + NE CY D K + W+ E
Sbjct: 119 PT---YRKYAKILAGKL----AERYKDHPQIVMWHVSNEYGGYCYCDNCEKQFRVWLKER 171
Query: 215 ASYVKSID 222
+++++
Sbjct: 172 YGTLEALN 179
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 100/272 (36%), Gaps = 77/272 (28%)
Query: 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN-------EQMFQGLDFVISEARKYGIK 117
F KE G S R P+++S +Y ++ F+ +D VI+ A K G+
Sbjct: 39 FDIIKEAGFSHVRI---------PIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLA 89
Query: 118 LVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177
+V++ +++Y++ + H + L +
Sbjct: 90 VVIN-IHHYEELMNDPE-----------------------------EHKERFLALWKQIA 119
Query: 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAW---ITEMASYVKSIDGNHLLEAGLEGF 234
YKD P + +E++N P P + W + E ++SID H + G +
Sbjct: 120 D-RYKDYPETLFFEILNAPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEW 173
Query: 235 YGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQ---WLPSS---------SD 282
G S+ EK P ++ N I I + + Q W+ S S
Sbjct: 174 GGISALEKLSV-PKWE-------KNSIVTIHYYNPFEFTHQGAEWVEGSEKWLGRKWGSP 225
Query: 283 ESQTSFLNNWLYNHIQDAQDTLRKPILLAEFG 314
+ Q + +N I++ ++PI + EFG
Sbjct: 226 DDQKHLIEE--FNFIEEWSKKNKRPIYIGEFG 255
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 100/272 (36%), Gaps = 77/272 (28%)
Query: 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN-------EQMFQGLDFVISEARKYGIK 117
F KE G S R P+++S +Y ++ F+ +D VI+ A K G+
Sbjct: 39 FDIIKEAGFSHVRI---------PIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLA 89
Query: 118 LVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177
+V++ +++Y++ + H + L +
Sbjct: 90 VVIN-IHHYEELMNDPE-----------------------------EHKERFLALWKQIA 119
Query: 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAW---ITEMASYVKSIDGNHLLEAGLEGF 234
YKD P + +E++NEP P + W + E ++SID H + G +
Sbjct: 120 D-RYKDYPETLFFEILNEPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEW 173
Query: 235 YGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQ---WLPSS---------SD 282
G S+ EK P ++ N I I + + Q W+ S S
Sbjct: 174 GGISALEKLSV-PKWE-------KNSIVTIHYYNPFEFTHQGAEWVEGSEKWLGRKWGSP 225
Query: 283 ESQTSFLNNWLYNHIQDAQDTLRKPILLAEFG 314
+ Q + +N I++ ++PI + FG
Sbjct: 226 DDQKHLIEE--FNFIEEWSKKNKRPIYIGAFG 255
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 181 YKDEPTIMAWELMNEPRCYADPSGKTIQAW---ITEMASYVKSIDGNHLLEAGLEGFYGP 237
YKD P + +E++N P P + W + E ++SID H + G + G
Sbjct: 122 YKDYPETLFFEILNAPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGI 176
Query: 238 SSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQ---WLPSS---------SDESQ 285
S+ EK P ++ N I I + + Q W+ S S + Q
Sbjct: 177 SALEKLSV-PKWE-------KNSIVTIHYYNPFEFTHQGAEWVEGSEKWLGRKWGSPDDQ 228
Query: 286 TSFLNNWLYNHIQDAQDTLRKPILLAEFG 314
+ +N I++ ++PI + EFG
Sbjct: 229 KHLIEE--FNFIEEWSKKNKRPIYIGEFG 255
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 56/267 (20%)
Query: 101 FQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQ 160
Q +D +++ A + G++++L R + ++T+SV +
Sbjct: 94 LQVMDKIVAYAGQIGLRIILD------------------RHRPDCSGQSALWYTSSVSEA 135
Query: 161 YYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPR---CY--ADPSGKTIQAWITEMA 215
+ + ++ + R YK PT++ ++L NEP C+ DPS A
Sbjct: 136 TWISDLQALAQR--------YKGNPTVVGFDLHNEPHDPACWGCGDPSIDWRLA-AERAG 186
Query: 216 SYVKSIDGNHLL-EAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIP------GIDFAT 268
+ V S++ N L+ G++ + G + + N Q + +P D+AT
Sbjct: 187 NAVLSVNPNLLIFVEGVQSYNG----DSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDYAT 242
Query: 269 LHSYPDQWL--PSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQRD 326
YP W P+ + + NW Y Q+ P+ L EFG +L+++ D
Sbjct: 243 -SVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQNI-----APVWLGEFGTTLQST----TD 292
Query: 327 QLF-DTVYSAIYLSARSGGAAVGGMFW 352
Q + T+ + +A+ G + FW
Sbjct: 293 QTWLKTLVQYLRPTAQYGADSFQWTFW 319
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 152 FFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPR---CY--ADPSGKT 206
++T+SV + + + ++ + R YK PT++ ++L NEP C+ DPS
Sbjct: 127 WYTSSVSEATWISDLQALAQR--------YKGNPTVVGFDLHNEPHDPACWGCGDPSIDW 178
Query: 207 IQAWITEMASYVKSIDGNHLL-EAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGID 265
A + V S++ N L+ G++ + G + + N Q + +P
Sbjct: 179 RLA-AERAGNAVLSVNPNLLIFVEGVQSYNG----DSYWWGGNLQGAGQYPVVLNVPNRL 233
Query: 266 FATLHSY-----PDQWL--PSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLK 318
+ H Y P W P+ + + NW Y Q+ P+ L EFG +L+
Sbjct: 234 VYSAHDYATSVGPQTWFSDPTFPNNMPGIWNKNWGYLFNQNI-----APVWLGEFGTTLQ 288
Query: 319 TS 320
++
Sbjct: 289 ST 290
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 32/84 (38%)
Query: 129 FGGKKQYVNWARGQGQSIS-----------------SDDDFFTNSVVKQYYKNHIKTVLT 171
F G VNWA+ G+ I +D + TN + KNHI T++T
Sbjct: 64 FAGADYLVNWAQQNGKLIRGHTLVGHFYLPSWVSSITDKNTLTNVM-----KNHITTLMT 118
Query: 172 RINTVTGVAYKDEPTIMAWELMNE 195
R YK + I AW+++NE
Sbjct: 119 R--------YKGK--IRAWDVVNE 132
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 32/84 (38%)
Query: 129 FGGKKQYVNWARGQGQSIS-----------------SDDDFFTNSVVKQYYKNHIKTVLT 171
F G VNWA+ G+ I +D + TN KNHI T++T
Sbjct: 63 FAGADYLVNWAQQNGKLIRGHTLVWHSQLPSWVSSITDKNTLTN-----VMKNHITTLMT 117
Query: 172 RINTVTGVAYKDEPTIMAWELMNE 195
R YK + I AW+++NE
Sbjct: 118 R--------YKGK--IRAWDVVNE 131
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 32/84 (38%)
Query: 129 FGGKKQYVNWARGQGQSIS-----------------SDDDFFTNSVVKQYYKNHIKTVLT 171
F G VNWA+ G+ I +D + TN KNHI T++T
Sbjct: 63 FAGADYLVNWAQQNGKLIRGHTLVWHSQLPSWVSSITDKNTLTN-----VMKNHITTLMT 117
Query: 172 RINTVTGVAYKDEPTIMAWELMNE 195
R YK + I AW+++NE
Sbjct: 118 R--------YKGK--IRAWDVVNE 131
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 32/84 (38%)
Query: 129 FGGKKQYVNWARGQGQSIS-----------------SDDDFFTNSVVKQYYKNHIKTVLT 171
F G VNWA+ G+ I +D + TN KNHI T++T
Sbjct: 63 FAGADYLVNWAQQNGKLIRGHTLVWHSQLPSWVSSITDKNTLTN-----VMKNHITTLMT 117
Query: 172 RINTVTGVAYKDEPTIMAWELMNE 195
R YK + I AW+++NE
Sbjct: 118 R--------YKGK--IRAWDVVNE 131
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 32/84 (38%)
Query: 129 FGGKKQYVNWARGQGQSIS-----------------SDDDFFTNSVVKQYYKNHIKTVLT 171
F G VNWA+ G+ I +D + TN KNHI T++T
Sbjct: 63 FAGADYLVNWAQQNGKLIRGHTLVWHSQLPSWVSSITDKNTLTN-----VMKNHITTLMT 117
Query: 172 RINTVTGVAYKDEPTIMAWELMNE 195
R YK + I AW+++NE
Sbjct: 118 R--------YKGK--IRAWDVVNE 131
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 182 KDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSE 241
K+ P ++ W + NEP + + +G ++ I ++ KS+D + +
Sbjct: 418 KNHPAVVMWSVANEPASHLESAGYYLKMVI----AHTKSLDPSRPV-------------- 459
Query: 242 KQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQ 301
F +++ A+ P +D L+SY + D + L ++
Sbjct: 460 ------TFVSNSNYAADKGAPYVDVICLNSYYSWY----HDYGHLELIQLQLATQFENWY 509
Query: 302 DTLRKPILLAEFG 314
+KPI+ +E+G
Sbjct: 510 KKYQKPIIQSEYG 522
>pdb|3E03|A Chain A, Crystal Structure Of A Putative Dehydrogenase From
Xanthomonas Campestris
pdb|3E03|B Chain B, Crystal Structure Of A Putative Dehydrogenase From
Xanthomonas Campestris
pdb|3E03|C Chain C, Crystal Structure Of A Putative Dehydrogenase From
Xanthomonas Campestris
Length = 274
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 209 AWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFAT 268
AW Y + G L+ GL +GP P + TD I N +PG+D A
Sbjct: 156 AWWGAHTGYTLAKXGXSLVTLGLAAEFGPQGVAINALWPRTVIATDAI--NXLPGVDAAA 213
Query: 269 L 269
Sbjct: 214 C 214
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 302 DTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARSGGAAVGG 349
DT+ KPILL F +K + QRD +T+ ++ L G VGG
Sbjct: 316 DTINKPILLNRFPSEIK-AFYMQRDAQDNTLTESVDLLMPGVGEIVGG 362
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 302 DTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARSGGAAVGG 349
DT+ KPILL F +K + QRD +T+ ++ L G VGG
Sbjct: 318 DTINKPILLNRFPSEIK-AFYMQRDAKDNTLTESVDLLMPGVGEIVGG 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,116,725
Number of Sequences: 62578
Number of extensions: 614509
Number of successful extensions: 1615
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1582
Number of HSP's gapped (non-prelim): 35
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)