Query 014426
Match_columns 425
No_of_seqs 267 out of 2200
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 5E-30 1.1E-34 247.1 22.4 265 34-357 4-280 (281)
2 COG3934 Endo-beta-mannanase [C 100.0 1.1E-30 2.5E-35 254.5 8.7 310 31-391 4-326 (587)
3 PRK10150 beta-D-glucuronidase; 99.9 4.2E-24 9E-29 227.4 31.2 292 20-372 272-578 (604)
4 PF02836 Glyco_hydro_2_C: Glyc 99.9 1.6E-21 3.6E-26 190.2 23.0 158 24-231 1-158 (298)
5 TIGR03356 BGL beta-galactosida 99.8 2.6E-19 5.6E-24 182.2 22.3 283 58-372 53-412 (427)
6 PRK10340 ebgA cryptic beta-D-g 99.8 8.1E-19 1.8E-23 195.1 25.6 233 20-358 314-549 (1021)
7 PRK09525 lacZ beta-D-galactosi 99.8 2.7E-18 5.9E-23 190.6 25.5 244 20-358 330-575 (1027)
8 PF02449 Glyco_hydro_42: Beta- 99.8 1.3E-18 2.9E-23 174.9 17.4 265 58-373 9-354 (374)
9 PLN02814 beta-glucosidase 99.8 8.1E-18 1.8E-22 173.6 21.9 284 58-372 76-459 (504)
10 PRK09593 arb 6-phospho-beta-gl 99.8 1.3E-17 2.9E-22 171.4 23.0 284 58-372 72-446 (478)
11 PRK09589 celA 6-phospho-beta-g 99.8 3.1E-17 6.6E-22 168.7 24.0 284 58-371 66-444 (476)
12 PLN02998 beta-glucosidase 99.8 2.1E-17 4.5E-22 170.3 22.4 284 58-372 81-464 (497)
13 TIGR01233 lacG 6-phospho-beta- 99.8 5.2E-17 1.1E-21 166.8 24.2 284 58-373 52-443 (467)
14 PRK13511 6-phospho-beta-galact 99.8 4.3E-17 9.3E-22 167.7 22.9 285 58-373 53-445 (469)
15 PRK15014 6-phospho-beta-glucos 99.8 6.2E-17 1.3E-21 166.3 23.4 284 58-371 68-445 (477)
16 PLN02849 beta-glucosidase 99.8 5.7E-17 1.2E-21 167.3 22.4 283 58-371 78-458 (503)
17 PRK09852 cryptic 6-phospho-bet 99.8 9.9E-17 2.2E-21 164.6 23.1 285 58-372 70-442 (474)
18 COG2723 BglB Beta-glucosidase/ 99.8 1.5E-16 3.2E-21 158.9 22.6 283 58-371 58-429 (460)
19 PF00232 Glyco_hydro_1: Glycos 99.7 1.2E-18 2.6E-23 179.3 7.0 285 58-372 57-430 (455)
20 PF03198 Glyco_hydro_72: Gluca 99.7 1.6E-15 3.4E-20 144.2 19.3 272 17-370 4-290 (314)
21 COG3250 LacZ Beta-galactosidas 99.6 4E-14 8.7E-19 152.2 17.8 155 19-233 279-435 (808)
22 PF07745 Glyco_hydro_53: Glyco 99.5 2.9E-13 6.2E-18 132.1 18.1 239 61-352 26-294 (332)
23 PF13204 DUF4038: Protein of u 99.5 7.3E-13 1.6E-17 128.3 15.5 167 28-231 2-186 (289)
24 smart00633 Glyco_10 Glycosyl h 99.4 5.7E-12 1.2E-16 120.1 17.9 216 86-357 3-229 (254)
25 COG2730 BglC Endoglucanase [Ca 99.4 2.8E-12 6E-17 130.3 16.0 115 60-198 74-193 (407)
26 PLN03059 beta-galactosidase; P 99.4 2.2E-11 4.7E-16 130.0 21.0 174 23-216 29-210 (840)
27 PF01301 Glyco_hydro_35: Glyco 99.4 1.8E-11 3.9E-16 120.2 18.1 168 30-224 1-173 (319)
28 KOG0626 Beta-glucosidase, lact 99.4 3E-11 6.6E-16 122.1 20.0 283 58-370 90-484 (524)
29 PF12876 Cellulase-like: Sugar 99.4 9.3E-13 2E-17 104.7 5.5 75 181-272 5-88 (88)
30 COG3867 Arabinogalactan endo-1 99.3 6E-10 1.3E-14 104.1 19.9 247 60-353 64-341 (403)
31 PF01229 Glyco_hydro_39: Glyco 99.1 1.1E-09 2.3E-14 114.0 14.2 283 58-372 38-346 (486)
32 COG1874 LacA Beta-galactosidas 98.9 1.1E-08 2.4E-13 107.9 14.2 174 26-222 3-190 (673)
33 PF00331 Glyco_hydro_10: Glyco 98.8 3.4E-08 7.5E-13 97.2 12.2 241 65-357 27-288 (320)
34 KOG0496 Beta-galactosidase [Ca 98.8 8.1E-08 1.8E-12 99.2 13.8 154 23-198 19-177 (649)
35 KOG2230 Predicted beta-mannosi 98.6 5.6E-07 1.2E-11 90.9 13.6 119 31-199 330-448 (867)
36 PF14488 DUF4434: Domain of un 98.4 1.4E-05 3.1E-10 71.0 14.5 141 56-230 17-160 (166)
37 COG3693 XynA Beta-1,4-xylanase 98.4 2E-05 4.4E-10 75.4 16.1 218 84-357 67-305 (345)
38 COG5309 Exo-beta-1,3-glucanase 98.3 5E-05 1.1E-09 70.7 17.0 198 58-334 62-267 (305)
39 COG3934 Endo-beta-mannanase [C 98.2 1.5E-08 3.4E-13 100.4 -8.4 314 19-357 33-415 (587)
40 PF11790 Glyco_hydro_cc: Glyco 98.2 1.8E-05 4E-10 74.7 12.4 141 187-353 66-211 (239)
41 PF14587 Glyco_hydr_30_2: O-Gl 98.1 0.00048 1E-08 68.4 19.8 253 36-319 13-314 (384)
42 PF02638 DUF187: Glycosyl hydr 97.8 0.0019 4E-08 63.5 17.9 208 57-274 17-263 (311)
43 COG5520 O-Glycosyl hydrolase [ 97.7 0.0016 3.5E-08 63.1 16.0 229 70-357 77-312 (433)
44 PF02055 Glyco_hydro_30: O-Gly 97.5 0.0048 1E-07 64.2 17.0 251 60-362 102-389 (496)
45 PF03662 Glyco_hydro_79n: Glyc 96.9 0.0013 2.9E-08 64.1 5.3 23 101-123 108-130 (319)
46 PF13200 DUF4015: Putative gly 96.9 0.43 9.3E-06 46.8 22.2 270 57-355 11-313 (316)
47 COG3534 AbfA Alpha-L-arabinofu 96.5 0.024 5.2E-07 57.0 11.1 179 61-274 51-246 (501)
48 TIGR01515 branching_enzym alph 96.2 0.12 2.5E-06 55.7 15.0 167 59-229 156-347 (613)
49 PF14871 GHL6: Hypothetical gl 96.2 0.033 7.2E-07 47.5 8.6 107 61-172 2-122 (132)
50 PRK10785 maltodextrin glucosid 96.0 0.11 2.4E-06 55.7 13.6 67 57-123 177-247 (598)
51 PRK05402 glycogen branching en 95.8 0.33 7.2E-06 53.4 16.7 164 60-229 267-456 (726)
52 COG1649 Uncharacterized protei 95.8 0.22 4.7E-06 50.5 13.9 217 38-274 45-309 (418)
53 PRK12313 glycogen branching en 95.5 0.68 1.5E-05 50.1 17.2 165 60-230 172-360 (633)
54 TIGR02402 trehalose_TreZ malto 95.4 0.47 1E-05 50.3 15.6 155 56-230 108-279 (542)
55 PRK14705 glycogen branching en 95.2 0.67 1.5E-05 53.3 16.7 166 59-228 766-955 (1224)
56 PLN02801 beta-amylase 95.1 0.26 5.7E-06 50.6 11.8 129 58-220 36-171 (517)
57 PLN02705 beta-amylase 95.1 0.21 4.6E-06 52.1 11.2 129 58-220 267-402 (681)
58 PLN02905 beta-amylase 95.1 0.23 4.9E-06 52.1 11.3 130 57-220 284-420 (702)
59 PLN02803 beta-amylase 95.1 0.21 4.5E-06 51.6 10.9 129 58-220 106-241 (548)
60 PLN02161 beta-amylase 95.0 0.26 5.7E-06 50.6 11.5 130 58-220 116-251 (531)
61 PLN02960 alpha-amylase 95.0 0.59 1.3E-05 51.6 14.9 163 59-229 417-609 (897)
62 PRK14706 glycogen branching en 95.0 0.84 1.8E-05 49.3 15.9 162 59-229 168-356 (639)
63 smart00642 Aamy Alpha-amylase 94.9 0.13 2.9E-06 45.6 8.1 69 56-124 16-92 (166)
64 PLN00197 beta-amylase; Provisi 94.8 0.28 6.1E-06 50.8 11.2 129 58-220 126-261 (573)
65 cd06565 GH20_GcnA-like Glycosy 94.5 0.73 1.6E-05 45.0 13.0 154 57-224 15-180 (301)
66 PF01120 Alpha_L_fucos: Alpha- 94.5 1.3 2.7E-05 44.3 14.8 139 58-229 90-243 (346)
67 COG0296 GlgB 1,4-alpha-glucan 94.3 0.68 1.5E-05 49.4 12.9 177 42-225 144-351 (628)
68 PRK12568 glycogen branching en 94.2 1.4 3.1E-05 48.1 15.4 164 59-229 270-460 (730)
69 PF00128 Alpha-amylase: Alpha 93.9 0.11 2.5E-06 49.9 5.9 65 59-123 4-73 (316)
70 cd02742 GH20_hexosaminidase Be 93.7 1.7 3.8E-05 42.4 13.9 149 57-222 14-184 (303)
71 PLN00196 alpha-amylase; Provis 92.8 1.2 2.7E-05 45.7 11.7 81 38-123 26-113 (428)
72 TIGR02104 pulA_typeI pullulana 92.6 2.3 5.1E-05 45.8 14.0 143 63-228 168-346 (605)
73 PLN02447 1,4-alpha-glucan-bran 92.6 4.4 9.4E-05 44.5 16.0 164 60-229 252-444 (758)
74 cd06568 GH20_SpHex_like A subg 92.4 4.7 0.0001 40.0 14.8 147 57-223 16-189 (329)
75 cd06564 GH20_DspB_LnbB-like Gl 91.5 12 0.00025 37.0 16.5 148 57-223 15-194 (326)
76 COG3664 XynB Beta-xylosidase [ 91.2 3.7 8E-05 41.3 12.3 230 67-357 13-257 (428)
77 PF12891 Glyco_hydro_44: Glyco 91.1 0.59 1.3E-05 43.7 6.3 120 101-228 23-176 (239)
78 cd06562 GH20_HexA_HexB-like Be 90.9 8.1 0.00018 38.6 14.8 110 58-172 17-147 (348)
79 PLN02361 alpha-amylase 90.9 1.5 3.3E-05 44.6 9.6 85 34-123 9-97 (401)
80 PRK03705 glycogen debranching 89.3 0.9 2E-05 49.2 6.9 59 64-123 184-263 (658)
81 PRK10933 trehalose-6-phosphate 89.3 1.4 3.1E-05 46.8 8.4 65 56-123 30-102 (551)
82 TIGR02403 trehalose_treC alpha 88.3 1.7 3.7E-05 46.1 8.2 68 56-123 24-96 (543)
83 PRK09505 malS alpha-amylase; R 87.9 2.2 4.7E-05 46.5 8.7 67 57-123 228-313 (683)
84 TIGR01531 glyc_debranch glycog 87.9 1.9 4E-05 50.0 8.3 97 23-123 98-206 (1464)
85 TIGR02456 treS_nterm trehalose 87.8 1.9 4.1E-05 45.8 8.1 68 56-123 25-97 (539)
86 TIGR02100 glgX_debranch glycog 87.8 4.1 8.9E-05 44.5 10.7 59 64-123 189-266 (688)
87 smart00812 Alpha_L_fucos Alpha 87.8 11 0.00024 38.2 13.1 136 58-225 80-226 (384)
88 cd06563 GH20_chitobiase-like T 87.5 15 0.00032 36.8 13.9 111 58-172 17-163 (357)
89 TIGR02102 pullulan_Gpos pullul 87.3 19 0.00042 41.5 15.9 155 58-234 479-673 (1111)
90 cd06570 GH20_chitobiase-like_1 87.0 13 0.00029 36.5 12.9 63 58-123 17-89 (311)
91 PRK09441 cytoplasmic alpha-amy 86.8 1.9 4.2E-05 45.0 7.4 82 38-123 5-102 (479)
92 PF05089 NAGLU: Alpha-N-acetyl 86.7 2.6 5.6E-05 41.5 7.6 157 56-229 16-216 (333)
93 PLN02784 alpha-amylase 85.8 4.7 0.0001 44.7 9.7 83 34-123 500-589 (894)
94 TIGR02103 pullul_strch alpha-1 85.5 19 0.00042 40.5 14.5 111 101-234 403-527 (898)
95 cd06602 GH31_MGAM_SI_GAA This 85.5 16 0.00035 36.2 12.9 156 58-229 23-199 (339)
96 PLN02877 alpha-amylase/limit d 85.2 34 0.00073 38.8 16.1 118 101-234 465-598 (970)
97 KOG2566 Beta-glucocerebrosidas 84.9 46 0.00099 33.5 15.3 247 69-366 134-418 (518)
98 TIGR02401 trehalose_TreY malto 84.2 3.3 7.2E-05 45.8 7.8 67 57-123 14-86 (825)
99 PF00728 Glyco_hydro_20: Glyco 83.9 1.6 3.6E-05 43.2 5.1 155 58-230 17-216 (351)
100 COG3589 Uncharacterized conser 83.0 3.2 7E-05 40.6 6.3 56 58-123 15-70 (360)
101 PRK13398 3-deoxy-7-phosphohept 82.4 15 0.00032 35.3 10.6 80 31-125 21-101 (266)
102 PF05913 DUF871: Bacterial pro 82.0 2.4 5.2E-05 42.4 5.3 56 58-123 13-68 (357)
103 PF01373 Glyco_hydro_14: Glyco 81.9 2 4.4E-05 43.3 4.6 105 58-172 15-139 (402)
104 PRK14511 maltooligosyl trehalo 81.6 4.6 0.0001 45.0 7.6 67 57-123 18-90 (879)
105 PF07488 Glyco_hydro_67M: Glyc 81.3 9.5 0.00021 37.0 8.7 131 57-222 55-188 (328)
106 KOG2233 Alpha-N-acetylglucosam 81.2 15 0.00032 37.9 10.3 159 57-229 76-280 (666)
107 PF07555 NAGidase: beta-N-acet 80.7 16 0.00034 35.8 10.3 67 55-124 11-78 (306)
108 PF02065 Melibiase: Melibiase; 80.7 60 0.0013 33.0 14.8 176 39-231 41-234 (394)
109 cd06545 GH18_3CO4_chitinase Th 80.4 32 0.0007 32.4 12.3 94 102-231 46-139 (253)
110 PRK14507 putative bifunctional 80.4 4.4 9.6E-05 48.2 7.4 67 58-124 757-829 (1693)
111 PRK13210 putative L-xylulose 5 80.1 4.6 0.0001 38.6 6.5 62 59-124 94-155 (284)
112 PRK14510 putative bifunctional 79.9 4.1 8.9E-05 47.5 6.9 60 63-123 191-268 (1221)
113 PRK09856 fructoselysine 3-epim 79.7 4.2 9.1E-05 38.7 6.0 61 59-123 90-150 (275)
114 TIGR03234 OH-pyruv-isom hydrox 79.0 5 0.00011 37.8 6.2 63 59-125 84-146 (254)
115 cd06569 GH20_Sm-chitobiase-lik 78.6 7.3 0.00016 40.3 7.7 64 57-123 20-118 (445)
116 cd06603 GH31_GANC_GANAB_alpha 78.1 19 0.00042 35.6 10.4 128 57-198 22-165 (339)
117 PRK14582 pgaB outer membrane N 77.8 54 0.0012 35.7 14.1 166 58-230 333-537 (671)
118 TIGR01370 cysRS possible cyste 77.3 34 0.00073 33.7 11.4 72 153-229 140-211 (315)
119 COG0366 AmyA Glycosidases [Car 77.2 7.2 0.00016 40.4 7.4 68 56-123 26-98 (505)
120 TIGR00542 hxl6Piso_put hexulos 76.5 7.3 0.00016 37.3 6.7 61 59-123 94-154 (279)
121 COG1523 PulA Type II secretory 76.5 7.3 0.00016 42.4 7.1 58 65-123 206-286 (697)
122 PF01261 AP_endonuc_2: Xylose 76.3 26 0.00057 31.2 10.0 130 59-225 27-158 (213)
123 cd06547 GH85_ENGase Endo-beta- 75.9 12 0.00026 37.3 8.0 95 106-228 50-145 (339)
124 PRK13209 L-xylulose 5-phosphat 75.7 6.8 0.00015 37.5 6.2 62 59-124 99-160 (283)
125 cd02875 GH18_chitobiase Chitob 75.6 22 0.00049 35.6 10.0 91 105-230 67-157 (358)
126 TIGR02455 TreS_stutzeri trehal 73.9 11 0.00024 40.5 7.5 63 62-124 77-152 (688)
127 PRK09936 hypothetical protein; 73.9 90 0.0019 30.3 16.1 57 57-123 36-93 (296)
128 PF02057 Glyco_hydro_59: Glyco 73.7 12 0.00026 40.3 7.8 143 106-316 116-262 (669)
129 PRK13397 3-deoxy-7-phosphohept 72.7 14 0.00031 35.0 7.3 63 57-125 27-89 (250)
130 PRK09997 hydroxypyruvate isome 72.4 10 0.00022 35.9 6.4 63 59-125 85-147 (258)
131 PF14883 GHL13: Hypothetical g 72.4 72 0.0016 30.9 11.9 236 58-318 16-265 (294)
132 PF03659 Glyco_hydro_71: Glyco 72.4 20 0.00042 36.4 8.7 54 57-123 15-68 (386)
133 cd06600 GH31_MGAM-like This fa 72.2 80 0.0017 31.0 12.9 157 57-229 22-195 (317)
134 KOG3698 Hyaluronoglucosaminida 72.0 29 0.00062 36.6 9.6 82 33-123 11-95 (891)
135 PF01261 AP_endonuc_2: Xylose 70.9 7.6 0.00016 34.8 5.0 66 58-125 70-135 (213)
136 cd06542 GH18_EndoS-like Endo-b 70.5 82 0.0018 29.5 12.2 99 101-230 50-151 (255)
137 cd06592 GH31_glucosidase_KIAA1 69.5 59 0.0013 31.7 11.2 108 57-172 28-153 (303)
138 PRK08673 3-deoxy-7-phosphohept 69.3 24 0.00052 35.1 8.3 77 34-125 91-167 (335)
139 KOG4701 Chitinase [Cell wall/m 68.7 1.3E+02 0.0029 30.2 15.8 203 103-355 91-294 (568)
140 cd06595 GH31_xylosidase_XylS-l 67.8 38 0.00083 32.8 9.4 129 57-199 23-163 (292)
141 PRK14565 triosephosphate isome 67.6 27 0.00057 32.9 7.9 118 65-231 78-196 (237)
142 PRK12595 bifunctional 3-deoxy- 67.5 45 0.00098 33.5 10.0 80 31-125 112-192 (360)
143 PRK14042 pyruvate carboxylase 67.2 23 0.00049 38.1 8.2 64 38-122 80-143 (596)
144 COG3623 SgaU Putative L-xylulo 66.8 36 0.00077 31.9 8.2 82 98-223 92-176 (287)
145 cd06601 GH31_lyase_GLase GLase 66.4 36 0.00078 33.8 9.0 116 57-199 22-137 (332)
146 cd06591 GH31_xylosidase_XylS X 64.8 57 0.0012 32.0 10.1 126 57-199 22-163 (319)
147 cd00019 AP2Ec AP endonuclease 64.7 21 0.00046 34.0 6.9 61 59-124 85-145 (279)
148 TIGR00542 hxl6Piso_put hexulos 62.4 1E+02 0.0023 29.2 11.3 103 59-197 52-158 (279)
149 PLN03244 alpha-amylase; Provis 61.6 1.1E+02 0.0023 34.1 11.9 122 101-227 440-582 (872)
150 KOG0470 1,4-alpha-glucan branc 60.8 42 0.0009 36.5 8.6 113 59-172 255-393 (757)
151 PRK12677 xylose isomerase; Pro 60.6 20 0.00042 36.4 6.0 66 59-124 114-181 (384)
152 KOG2499 Beta-N-acetylhexosamin 59.0 22 0.00048 36.7 5.9 64 59-123 198-271 (542)
153 PRK12581 oxaloacetate decarbox 58.8 41 0.00089 35.0 8.0 48 59-122 105-152 (468)
154 TIGR01361 DAHP_synth_Bsub phos 58.2 38 0.00082 32.3 7.2 77 34-125 23-99 (260)
155 cd02874 GH18_CFLE_spore_hydrol 56.6 89 0.0019 30.3 9.9 90 105-222 48-137 (313)
156 PF01055 Glyco_hydro_31: Glyco 55.5 1.5E+02 0.0033 30.2 11.8 125 58-198 42-183 (441)
157 COG5016 Pyruvate/oxaloacetate 54.5 40 0.00087 34.1 6.8 48 59-122 98-145 (472)
158 PRK00042 tpiA triosephosphate 53.4 1.3E+02 0.0028 28.6 9.9 46 65-124 79-128 (250)
159 cd06604 GH31_glucosidase_II_Ma 53.2 1.1E+02 0.0024 30.2 10.0 108 58-170 23-146 (339)
160 PRK09856 fructoselysine 3-epim 52.8 2E+02 0.0044 27.0 11.9 131 59-228 47-179 (275)
161 KOG1066 Glucosidase II catalyt 52.6 52 0.0011 35.7 7.6 39 153-201 477-516 (915)
162 PRK12330 oxaloacetate decarbox 51.6 56 0.0012 34.3 7.7 64 38-122 81-144 (499)
163 cd07937 DRE_TIM_PC_TC_5S Pyruv 51.6 51 0.0011 31.6 7.1 48 59-122 91-138 (275)
164 PLN02692 alpha-galactosidase 51.4 45 0.00097 34.1 6.8 78 34-122 50-141 (412)
165 PRK12331 oxaloacetate decarbox 51.0 56 0.0012 33.8 7.6 48 59-122 96-143 (448)
166 cd06598 GH31_transferase_CtsZ 50.8 1.1E+02 0.0025 29.9 9.5 124 58-198 23-167 (317)
167 TIGR03849 arch_ComA phosphosul 50.7 44 0.00096 31.4 6.2 51 59-123 71-121 (237)
168 PTZ00333 triosephosphate isome 50.0 1.2E+02 0.0026 28.9 9.1 50 65-124 82-131 (255)
169 PF02679 ComA: (2R)-phospho-3- 50.0 35 0.00076 32.2 5.4 51 59-123 84-134 (244)
170 PF04914 DltD_C: DltD C-termin 49.4 1.5E+02 0.0032 25.2 8.6 57 97-172 31-87 (130)
171 PF14701 hDGE_amylase: glucano 49.3 56 0.0012 33.5 7.1 65 59-123 22-98 (423)
172 cd06589 GH31 The enzymes of gl 47.7 2.5E+02 0.0054 26.6 13.0 64 57-123 22-87 (265)
173 PRK13209 L-xylulose 5-phosphat 47.2 2.5E+02 0.0055 26.5 11.3 101 59-195 57-161 (283)
174 COG1453 Predicted oxidoreducta 47.2 1.6E+02 0.0035 29.6 9.6 183 68-313 13-204 (391)
175 PF09370 TIM-br_sig_trns: TIM- 46.7 91 0.002 29.8 7.6 26 205-230 195-220 (268)
176 PF06415 iPGM_N: BPG-independe 46.2 1.1E+02 0.0025 28.4 8.1 77 34-123 26-102 (223)
177 PLN02429 triosephosphate isome 45.9 2E+02 0.0044 28.3 10.1 21 104-124 165-189 (315)
178 PRK14040 oxaloacetate decarbox 45.9 77 0.0017 34.1 7.9 47 59-121 97-143 (593)
179 PRK09989 hypothetical protein; 45.5 52 0.0011 31.0 6.0 62 59-124 85-146 (258)
180 PLN02561 triosephosphate isome 45.5 2.8E+02 0.006 26.4 12.1 49 65-123 81-129 (253)
181 COG0276 HemH Protoheme ferro-l 44.4 2.1E+02 0.0046 28.2 10.0 108 104-221 104-219 (320)
182 PRK13396 3-deoxy-7-phosphohept 43.8 2.5E+02 0.0055 28.1 10.6 87 24-125 85-175 (352)
183 PF10566 Glyco_hydro_97: Glyco 43.8 64 0.0014 31.1 6.2 50 61-124 108-157 (273)
184 PRK14567 triosephosphate isome 42.8 2.1E+02 0.0046 27.2 9.5 49 65-123 78-126 (253)
185 cd02871 GH18_chitinase_D-like 41.1 3.5E+02 0.0075 26.3 12.5 49 102-172 60-108 (312)
186 TIGR02631 xylA_Arthro xylose i 40.5 67 0.0015 32.5 6.2 66 59-124 115-182 (382)
187 PRK09997 hydroxypyruvate isome 40.3 3.1E+02 0.0068 25.6 13.2 92 98-225 81-172 (258)
188 cd07944 DRE_TIM_HOA_like 4-hyd 40.1 61 0.0013 31.0 5.6 47 62-124 85-131 (266)
189 PF07071 DUF1341: Protein of u 40.1 76 0.0017 29.0 5.7 46 59-118 135-180 (218)
190 TIGR01626 ytfJ_HI0045 conserve 39.9 69 0.0015 28.9 5.5 52 20-75 28-91 (184)
191 COG1501 Alpha-glucosidases, fa 39.6 3.8E+02 0.0083 29.9 12.2 156 58-234 279-466 (772)
192 cd07948 DRE_TIM_HCS Saccharomy 39.4 40 0.00087 32.2 4.2 60 63-124 75-134 (262)
193 TIGR01108 oadA oxaloacetate de 39.4 1.1E+02 0.0023 32.9 7.8 48 59-122 91-138 (582)
194 COG2342 Predicted extracellula 38.7 2.7E+02 0.0058 26.9 9.3 70 154-229 120-190 (300)
195 COG3622 Hfi Hydroxypyruvate is 38.4 89 0.0019 29.5 6.0 64 58-125 84-147 (260)
196 smart00481 POLIIIAc DNA polyme 38.4 90 0.0019 22.5 5.1 47 59-122 15-61 (67)
197 cd07939 DRE_TIM_NifV Streptomy 38.3 39 0.00086 32.0 4.0 60 62-123 72-131 (259)
198 COG0635 HemN Coproporphyrinoge 38.3 3.3E+02 0.0072 27.9 10.9 113 60-223 135-266 (416)
199 PRK08195 4-hyroxy-2-oxovalerat 38.2 77 0.0017 31.5 6.1 46 62-123 91-136 (337)
200 PRK09282 pyruvate carboxylase 38.1 95 0.0021 33.4 7.1 48 59-122 96-143 (592)
201 cd01299 Met_dep_hydrolase_A Me 37.1 1.6E+02 0.0035 28.7 8.3 61 57-122 118-180 (342)
202 COG3525 Chb N-acetyl-beta-hexo 37.1 1.3E+02 0.0027 32.7 7.6 64 57-123 276-367 (732)
203 PRK15211 fimbrial chaperone pr 36.8 27 0.00058 32.7 2.5 32 1-34 3-34 (229)
204 KOG0471 Alpha-amylase [Carbohy 36.5 66 0.0014 34.2 5.6 65 59-123 40-109 (545)
205 PRK12399 tagatose 1,6-diphosph 36.4 59 0.0013 32.0 4.7 56 64-125 110-165 (324)
206 TIGR03217 4OH_2_O_val_ald 4-hy 36.3 92 0.002 30.9 6.3 46 62-123 90-135 (333)
207 PLN02763 hydrolase, hydrolyzin 36.3 2.5E+02 0.0053 32.2 10.1 125 58-198 200-339 (978)
208 cd00311 TIM Triosephosphate is 36.2 3.7E+02 0.0081 25.3 11.3 75 34-124 52-126 (242)
209 PF13380 CoA_binding_2: CoA bi 35.6 87 0.0019 25.7 5.1 42 58-119 65-106 (116)
210 COG3684 LacD Tagatose-1,6-bisp 35.2 90 0.002 29.7 5.5 54 65-125 117-170 (306)
211 TIGR01235 pyruv_carbox pyruvat 34.2 1.3E+02 0.0028 35.1 7.9 63 39-122 610-672 (1143)
212 PRK05692 hydroxymethylglutaryl 33.6 57 0.0012 31.6 4.2 60 62-123 82-141 (287)
213 COG2876 AroA 3-deoxy-D-arabino 33.4 2.1E+02 0.0046 27.4 7.7 62 57-124 57-118 (286)
214 PF08139 LPAM_1: Prokaryotic m 33.3 24 0.00053 20.8 1.0 17 1-17 6-23 (25)
215 cd02872 GH18_chitolectin_chito 33.3 4.9E+02 0.011 25.7 11.2 104 102-231 56-160 (362)
216 PRK12858 tagatose 1,6-diphosph 33.2 94 0.002 31.0 5.7 56 62-123 109-164 (340)
217 PF00682 HMGL-like: HMGL-like 32.9 1.9E+02 0.0041 26.6 7.6 64 58-123 66-129 (237)
218 PRK01060 endonuclease IV; Prov 32.7 2.7E+02 0.0058 26.3 8.8 51 60-118 13-63 (281)
219 KOG0259 Tyrosine aminotransfer 32.6 72 0.0016 32.2 4.7 70 59-136 183-253 (447)
220 PRK04161 tagatose 1,6-diphosph 32.5 78 0.0017 31.2 4.9 57 63-125 111-167 (329)
221 COG1306 Uncharacterized conser 32.2 1E+02 0.0022 30.0 5.5 64 58-123 76-145 (400)
222 TIGR03581 EF_0839 conserved hy 32.1 92 0.002 28.9 5.0 45 59-117 135-179 (236)
223 TIGR01232 lacD tagatose 1,6-di 32.1 80 0.0017 31.1 4.9 56 64-125 111-166 (325)
224 COG3054 Predicted transcriptio 31.8 76 0.0017 27.6 4.1 60 19-78 27-94 (184)
225 cd07943 DRE_TIM_HOA 4-hydroxy- 31.5 1.2E+02 0.0025 28.9 6.0 46 62-123 88-133 (263)
226 PF03644 Glyco_hydro_85: Glyco 31.5 74 0.0016 31.2 4.7 94 106-228 46-140 (311)
227 PRK13210 putative L-xylulose 5 31.4 4.4E+02 0.0096 24.7 12.1 58 59-121 52-113 (284)
228 TIGR02090 LEU1_arch isopropylm 31.3 58 0.0012 32.7 4.0 60 62-123 74-133 (363)
229 COG3280 TreY Maltooligosyl tre 30.8 1.3E+02 0.0029 33.0 6.6 67 58-124 18-90 (889)
230 cd02877 GH18_hevamine_XipI_cla 30.7 4.9E+02 0.011 25.0 13.1 22 102-123 59-80 (280)
231 PF10035 DUF2179: Uncharacteri 29.9 52 0.0011 22.9 2.5 20 211-230 29-48 (55)
232 PF13199 Glyco_hydro_66: Glyco 29.3 1.2E+02 0.0025 32.5 6.0 66 57-122 116-190 (559)
233 cd06593 GH31_xylosidase_YicI Y 29.3 1.2E+02 0.0027 29.3 5.9 65 57-123 22-87 (308)
234 PRK10449 heat-inducible protei 29.1 53 0.0011 28.1 2.9 39 1-39 1-46 (140)
235 COG0269 SgbH 3-hexulose-6-phos 28.8 1.8E+02 0.0039 27.0 6.3 46 65-127 73-118 (217)
236 TIGR02660 nifV_homocitr homoci 28.7 64 0.0014 32.4 3.8 60 62-123 75-134 (365)
237 PRK05434 phosphoglyceromutase; 27.7 2.1E+02 0.0046 30.1 7.5 58 58-123 127-184 (507)
238 cd07945 DRE_TIM_CMS Leptospira 27.3 74 0.0016 30.7 3.8 61 62-124 77-137 (280)
239 TIGR01210 conserved hypothetic 27.3 3.3E+02 0.0071 26.6 8.5 57 62-123 117-176 (313)
240 PF14881 Tubulin_3: Tubulin do 27.2 3.3E+02 0.0071 24.4 7.7 29 98-126 57-87 (180)
241 PRK14842 undecaprenyl pyrophos 26.8 88 0.0019 29.5 4.1 62 59-120 39-100 (241)
242 cd03174 DRE_TIM_metallolyase D 26.7 1E+02 0.0022 28.8 4.8 61 62-124 77-137 (265)
243 KOG2331 Predicted glycosylhydr 26.7 2.1E+02 0.0045 29.4 6.7 91 109-228 118-208 (526)
244 COG2875 CobM Precorrin-4 methy 25.8 2.1E+02 0.0045 27.0 6.1 88 19-121 13-109 (254)
245 TIGR03128 RuMP_HxlA 3-hexulose 25.7 2E+02 0.0043 25.9 6.3 44 64-124 68-111 (206)
246 PF10566 Glyco_hydro_97: Glyco 25.5 2.8E+02 0.0061 26.7 7.4 64 57-124 30-95 (273)
247 PF08194 DIM: DIM protein; In 25.3 81 0.0018 20.4 2.4 27 2-28 1-30 (36)
248 smart00636 Glyco_18 Glycosyl h 25.3 6.3E+02 0.014 24.5 11.8 99 103-231 53-155 (334)
249 PRK14841 undecaprenyl pyrophos 25.1 96 0.0021 29.1 4.0 62 59-120 34-95 (233)
250 PRK11627 hypothetical protein; 25.1 1.1E+02 0.0024 27.7 4.4 18 155-172 159-176 (192)
251 PRK10658 putative alpha-glucos 24.7 3.3E+02 0.0072 29.8 8.6 108 58-171 282-406 (665)
252 PF00121 TIM: Triosephosphate 24.5 2E+02 0.0042 27.2 6.0 50 65-124 77-126 (244)
253 cd00598 GH18_chitinase-like Th 24.5 5E+02 0.011 23.0 11.5 123 106-273 53-177 (210)
254 PRK11858 aksA trans-homoaconit 24.3 96 0.0021 31.3 4.2 60 62-123 78-137 (378)
255 cd07941 DRE_TIM_LeuA3 Desulfob 24.1 1E+02 0.0022 29.5 4.2 59 63-123 82-140 (273)
256 PRK14831 undecaprenyl pyrophos 24.0 1E+02 0.0022 29.3 4.0 62 59-120 51-112 (249)
257 TIGR01307 pgm_bpd_ind 2,3-bisp 24.0 2.8E+02 0.006 29.2 7.5 58 58-123 123-180 (501)
258 PRK07379 coproporphyrinogen II 23.8 1.5E+02 0.0032 30.2 5.4 50 61-123 114-173 (400)
259 PRK14041 oxaloacetate decarbox 23.5 1.9E+02 0.004 30.3 6.1 48 59-122 95-142 (467)
260 PLN02746 hydroxymethylglutaryl 23.5 1E+02 0.0022 30.8 4.1 61 61-123 123-183 (347)
261 PRK10626 hypothetical protein; 22.9 1.1E+02 0.0025 28.7 4.0 21 152-172 142-162 (239)
262 KOG1065 Maltase glucoamylase a 22.8 4.6E+02 0.01 29.2 9.0 61 58-123 310-372 (805)
263 PRK09057 coproporphyrinogen II 22.6 7.8E+02 0.017 24.6 11.1 58 62-123 104-161 (380)
264 TIGR03234 OH-pyruv-isom hydrox 22.6 6.1E+02 0.013 23.4 9.2 90 98-223 80-169 (254)
265 PRK09058 coproporphyrinogen II 22.4 1.4E+02 0.003 30.9 5.0 50 61-123 162-221 (449)
266 PLN02229 alpha-galactosidase 22.3 2.2E+02 0.0047 29.4 6.2 78 39-123 63-149 (427)
267 cd06549 GH18_trifunctional GH1 22.3 7.1E+02 0.015 24.0 13.2 57 152-222 82-138 (298)
268 PRK05904 coproporphyrinogen II 22.2 1.3E+02 0.0027 30.1 4.5 58 61-123 102-161 (353)
269 PRK14839 undecaprenyl pyrophos 22.1 1.2E+02 0.0027 28.5 4.1 62 59-120 40-101 (239)
270 PRK13125 trpA tryptophan synth 22.0 2.3E+02 0.0051 26.5 6.1 50 60-124 89-138 (244)
271 COG1082 IolE Sugar phosphate i 22.0 4.3E+02 0.0093 24.5 8.1 65 59-125 84-149 (274)
272 PRK14837 undecaprenyl pyrophos 21.7 1.3E+02 0.0028 28.2 4.1 62 59-120 37-98 (230)
273 PRK14840 undecaprenyl pyrophos 21.6 1.3E+02 0.0028 28.6 4.1 62 59-120 53-114 (250)
274 COG4124 ManB Beta-mannanase [C 21.6 8.2E+02 0.018 24.5 10.8 137 158-319 156-301 (355)
275 PRK10240 undecaprenyl pyrophos 21.5 1.4E+02 0.0029 28.0 4.2 62 59-120 24-85 (229)
276 cd07938 DRE_TIM_HMGL 3-hydroxy 21.5 1.3E+02 0.0028 28.9 4.3 60 62-123 76-135 (274)
277 COG0469 PykF Pyruvate kinase [ 21.5 2.5E+02 0.0053 29.4 6.5 50 61-122 19-68 (477)
278 TIGR00055 uppS undecaprenyl di 21.4 1.3E+02 0.0029 28.0 4.2 62 59-120 30-91 (226)
279 PF14481 Fimbrial_PilY2: Type 21.1 63 0.0014 26.2 1.7 17 24-40 39-55 (118)
280 TIGR02171 Fb_sc_TIGR02171 Fibr 20.8 4.5E+02 0.0098 29.8 8.6 25 99-123 805-829 (912)
281 PF06415 iPGM_N: BPG-independe 20.2 3E+02 0.0066 25.6 6.2 53 59-123 14-68 (223)
282 cd07940 DRE_TIM_IPMS 2-isoprop 20.2 1.2E+02 0.0026 28.9 3.7 59 62-122 72-134 (268)
283 PRK05628 coproporphyrinogen II 20.2 1.8E+02 0.0039 29.2 5.2 59 61-123 107-166 (375)
284 TIGR03471 HpnJ hopanoid biosyn 20.1 2.6E+02 0.0057 28.9 6.6 57 62-123 287-344 (472)
285 PRK01060 endonuclease IV; Prov 20.1 3.3E+02 0.0072 25.6 6.9 58 58-123 88-147 (281)
286 PRK08446 coproporphyrinogen II 20.1 1.4E+02 0.0031 29.6 4.4 59 61-123 97-156 (350)
287 PF02156 Glyco_hydro_26: Glyco 20.0 4.8E+02 0.011 25.5 8.0 78 181-274 146-232 (311)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=5e-30 Score=247.06 Aligned_cols=265 Identities=26% Similarity=0.448 Sum_probs=187.1
Q ss_pred CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCC-cCCC-CCChHHhHHHHHHHHHH
Q 014426 34 NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQ-YSPG-SYNEQMFQGLDFVISEA 111 (425)
Q Consensus 34 ~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q-~~~g-~~~~~~l~~lD~~i~~A 111 (425)
+|+++.++|+|.+|... ...+++|+.++++|+|+||+++..+ .++ +.|+ .++++.+++||++|++|
T Consensus 4 ~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~~~----~~~~~~~~~~~~~~~~~~ld~~v~~a 71 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVGWE----AYQEPNPGYNYDETYLARLDRIVDAA 71 (281)
T ss_dssp TSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEEST----STSTTSTTTSBTHHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCCHH----HhcCCCCCccccHHHHHHHHHHHHHH
Confidence 89999999999886543 2678999999999999999988743 344 4554 58999999999999999
Q ss_pred HHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE
Q 014426 112 RKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWE 191 (425)
Q Consensus 112 ~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~we 191 (425)
+++||+|||++|... .|.. ....+...+...+.|.++++.+++| |+++|.|++||
T Consensus 72 ~~~gi~vild~h~~~----------~w~~-------~~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~~e 126 (281)
T PF00150_consen 72 QAYGIYVILDLHNAP----------GWAN-------GGDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVGWE 126 (281)
T ss_dssp HHTT-EEEEEEEEST----------TCSS-------STSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEEEE
T ss_pred HhCCCeEEEEeccCc----------cccc-------cccccccchhhHHHHHhhhhhhccc--------cCCCCcEEEEE
Confidence 999999999999851 1210 0112233456788899999999999 99999999999
Q ss_pred eccCCCCCCCC------ChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCc
Q 014426 192 LMNEPRCYADP------SGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGID 265 (425)
Q Consensus 192 L~NEP~~~~~~------~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD 265 (425)
|+|||...... ..+.+.+|+++++++||+++|+++|++++.++....... ...+| ......+
T Consensus 127 l~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~-~~~~P-----------~~~~~~~ 194 (281)
T PF00150_consen 127 LWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGADPDGA-AADNP-----------NDADNND 194 (281)
T ss_dssp SSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTBHHHH-HHHST-----------TTTTTSE
T ss_pred ecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccccchh-hhcCc-----------ccccCce
Confidence 99999997432 136788999999999999999999999864442210000 00011 1124677
Q ss_pred EEEEecCCCCCCCCCC----chhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 014426 266 FATLHSYPDQWLPSSS----DESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSAR 341 (425)
Q Consensus 266 ~~s~H~Y~~~w~~~~~----~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~~~~~r~~~~~~~~~~~~~~~~ 341 (425)
++++|.|+. +..... ...........+..+...+.+ .++||+|+|||....... ...++...+++.+.+
T Consensus 195 ~~~~H~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~--~~~~~~~~~~~~~~~--- 267 (281)
T PF00150_consen 195 VYSFHFYDP-YDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN--GSTDYADAWLDYLEQ--- 267 (281)
T ss_dssp EEEEEEETT-TCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC--HHHHHHHHHHHHHHH---
T ss_pred eEEeeEeCC-CCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC--cCHHHHHHHHHHHHH---
Confidence 999999984 321110 111223445666777777766 799999999999754321 223444444443322
Q ss_pred cCCCcccccccccccC
Q 014426 342 SGGAAVGGMFWQLFTE 357 (425)
Q Consensus 342 ~~~~~~G~~~W~~~~~ 357 (425)
...|+++|++.++
T Consensus 268 ---~~~g~~~W~~~~~ 280 (281)
T PF00150_consen 268 ---NGIGWIYWSWKPN 280 (281)
T ss_dssp ---TTCEEEECEESSS
T ss_pred ---CCCeEEEEecCCC
Confidence 2679999999865
No 2
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-30 Score=254.45 Aligned_cols=310 Identities=20% Similarity=0.273 Sum_probs=225.4
Q ss_pred EEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChH-HhHHHHHHHH
Q 014426 31 LMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQ-MFQGLDFVIS 109 (425)
Q Consensus 31 f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~-~l~~lD~~i~ 109 (425)
|.++++.+.+.+.+-+|+... ..+++++|..++.+|++++|+|+. ||.. ....-|..+.. .+.+++.+++
T Consensus 4 F~Lg~n~wprIanikmw~~~~------~~ei~~dle~a~~vg~k~lR~fiL-DgEd--c~d~~G~~na~s~~~y~~~fla 74 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIG------NREIKADLEPAGFVGVKDLRLFIL-DGED--CRDKEGYRNAGSNVWYAAWFLA 74 (587)
T ss_pred EEeccccchhhhhhhHHHHhh------hhhhhcccccccCccceeEEEEEe-cCcc--hhhhhceecccccHHHHHHHhh
Confidence 555666666666665565543 268899999999999999999943 4322 22223544443 4899999999
Q ss_pred HHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEE
Q 014426 110 EARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMA 189 (425)
Q Consensus 110 ~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~ 189 (425)
.|..++|+++++|.+.|.++||++++..|++. +++++++.|+..+.-+++|+..+|+- ||.+|+|++
T Consensus 75 ~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~-----~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~g 141 (587)
T COG3934 75 PAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE-----QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIAG 141 (587)
T ss_pred hcccCcceEEEEEeecccccCcceeEeecCCC-----CCccccccchhhcccHHHHHHHHhhh--------hccChHHHH
Confidence 99999999999999999999999999999853 35678899999999999999999998 999999999
Q ss_pred EEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEE
Q 014426 190 WELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATL 269 (425)
Q Consensus 190 weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~ 269 (425)
|++.|||.+..+.++..+..|..+|.++||.+||+|+|++|++++.- +. +-|. .....+|+.+.
T Consensus 142 w~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp~---~~---~~py----------N~r~~vDya~~ 205 (587)
T COG3934 142 WALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASPW---PQ---YAPY----------NARFYVDYAAN 205 (587)
T ss_pred HHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCcc---cc---cCCc----------ccceeeccccc
Confidence 99999999977667889999999999999999999999999977521 00 1111 12347899999
Q ss_pred ecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCCCchhhhHHHHHHHHHHHHHhhcCCCccc
Q 014426 270 HSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLR-KPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARSGGAAVG 348 (425)
Q Consensus 270 H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~-kPv~i~EfG~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G 348 (425)
|.|| .|..+. - .+....|...+++..+. .+ +|++++|||.+...+. ++..-+..+.+..+. .+..|
T Consensus 206 hLY~-hyd~sl--~--~r~s~~yg~~~l~i~~~-~g~~pV~leefGfsta~g~--e~s~ayfiw~~lal~-----~ggdG 272 (587)
T COG3934 206 HLYR-HYDTSL--V--SRVSTVYGKPYLDIPTI-MGWQPVNLEEFGFSTAFGQ--ENSPAYFIWIRLALD-----TGGDG 272 (587)
T ss_pred hhhh-hccCCh--h--heeeeeecchhhccchh-cccceeeccccCCcccccc--cccchhhhhhhhHHh-----hcCCc
Confidence 9998 454332 0 12233456667777776 56 9999999999887542 222223333333222 24679
Q ss_pred ccccccccCCC---------CCCCCCceEEeCCCccHH--HHHHHHHHHHHhhh
Q 014426 349 GMFWQLFTEGL---------DSYRDGYEVIFSENPSTA--TIITDQSQKLNRLR 391 (425)
Q Consensus 349 ~~~W~~~~~g~---------~~~~dg~~i~~~~~~~~~--~~i~~~~~~~~~~~ 391 (425)
+++|++.+.+. .+..++|+|+-.+.++.. ..+.+.+.+.+.++
T Consensus 273 aLiwclsdf~~gsdd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~kdI~ 326 (587)
T COG3934 273 ALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWKDIS 326 (587)
T ss_pred eEEEEecCCccCCCCCCCccccccceeeeecCCCchhhhHHHHHHhccccceee
Confidence 99999998741 223468888877665432 23444555555554
No 3
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.94 E-value=4.2e-24 Score=227.36 Aligned_cols=292 Identities=17% Similarity=0.226 Sum_probs=185.2
Q ss_pred CCCc--EEEeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCC
Q 014426 20 DDGF--ITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN 97 (425)
Q Consensus 20 ~~~f--v~v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~ 97 (425)
+-|| |+++++.|.|||+|++++|+|.|........+.+.+.+.++|+.||++|+|+||+.... .+
T Consensus 272 ~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p-------------~~ 338 (604)
T PRK10150 272 RFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYP-------------YS 338 (604)
T ss_pred eeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCC-------------CC
Confidence 4576 77889999999999999999987554332233456788999999999999999994321 12
Q ss_pred hHHhHHHHHHHHHHHHcCCEEEEecccC--ccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccc
Q 014426 98 EQMFQGLDFVISEARKYGIKLVLSMVNN--YDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINT 175 (425)
Q Consensus 98 ~~~l~~lD~~i~~A~~~Gi~vil~l~~~--w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~ 175 (425)
.+++++|.++||+|+-++... ....+.. +. +. .. ..........+|+..+.+++.++.++.|
T Consensus 339 -------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~--~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~mv~r--- 402 (604)
T PRK10150 339 -------EEMLDLADRHGIVVIDETPAVGLNLSFGAG--LE-AG--NK-PKETYSEEAVNGETQQAHLQAIRELIAR--- 402 (604)
T ss_pred -------HHHHHHHHhcCcEEEEeccccccccccccc--cc-cc--cc-ccccccccccchhHHHHHHHHHHHHHHh---
Confidence 367899999999999887431 0011100 00 00 00 0000001123578889999999999999
Q ss_pred ccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccc
Q 014426 176 VTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDF 255 (425)
Q Consensus 176 ~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df 255 (425)
++|||+|++|.++||+.... +....++++|.+.+|++||+|+|+.+...+.. + ++
T Consensus 403 -----~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~---~-----~~-------- 457 (604)
T PRK10150 403 -----DKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCVNVMFAT---P-----DT-------- 457 (604)
T ss_pred -----ccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEEecccCC---c-----cc--------
Confidence 99999999999999987542 34678999999999999999999987532110 0 00
Q ss_pred hhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHH-HHhcCCCcEEEEeccCCCCC---C-Cc-hhhhHHH
Q 014426 256 IANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQD-AQDTLRKPILLAEFGKSLKT---S-GA-NQRDQLF 329 (425)
Q Consensus 256 ~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~-a~~~~~kPv~i~EfG~~~~~---~-~~-~~r~~~~ 329 (425)
....+.+||+++|.|+......... .....++...+.. .+. .+||++++|||+.... . +. ..-+++.
T Consensus 458 --~~~~~~~Dv~~~N~Y~~wy~~~~~~----~~~~~~~~~~~~~~~~~-~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q 530 (604)
T PRK10150 458 --DTVSDLVDVLCLNRYYGWYVDSGDL----ETAEKVLEKELLAWQEK-LHKPIIITEYGADTLAGLHSMYDDMWSEEYQ 530 (604)
T ss_pred --ccccCcccEEEEcccceecCCCCCH----HHHHHHHHHHHHHHHHh-cCCCEEEEccCCccccccccCCCCCCCHHHH
Confidence 0113568999999998633211111 1112233332222 222 4899999999975431 1 00 0112333
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccC----CC-CCCCCCceEEeCC
Q 014426 330 DTVYSAIYLSARSGGAAVGGMFWQLFTE----GL-DSYRDGYEVIFSE 372 (425)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~G~~~W~~~~~----g~-~~~~dg~~i~~~~ 372 (425)
...++...+.+.+...++|.++|++.|. +. ..-++..+|+..+
T Consensus 531 ~~~~~~~~~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~d 578 (604)
T PRK10150 531 CAFLDMYHRVFDRVPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRD 578 (604)
T ss_pred HHHHHHHHHHHhcCCceEEEEEEeeeccCCCCCCcccCCCcceeEcCC
Confidence 3333333333444467999999999984 22 1223566777543
No 4
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.89 E-value=1.6e-21 Score=190.16 Aligned_cols=158 Identities=18% Similarity=0.298 Sum_probs=113.2
Q ss_pred EEEeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHH
Q 014426 24 ITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQG 103 (425)
Q Consensus 24 v~v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~ 103 (425)
|+|++++|.|||||++++|+|.+........+.+.+.++++|..||++|+|+||+..... +
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~-------------~------ 61 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPP-------------S------ 61 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS---------------S------
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccC-------------c------
Confidence 689999999999999999999764322211234578999999999999999999954321 1
Q ss_pred HHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCC
Q 014426 104 LDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKD 183 (425)
Q Consensus 104 lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~ 183 (425)
.++++.|.++||.|+.++.... ++. |.. .+ .......++...+.+.+.++.+|.| ++|
T Consensus 62 -~~~~~~cD~~GilV~~e~~~~~--~~~------~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~N 119 (298)
T PF02836_consen 62 -PRFYDLCDELGILVWQEIPLEG--HGS------WQD-FG----NCNYDADDPEFRENAEQELREMVRR--------DRN 119 (298)
T ss_dssp -HHHHHHHHHHT-EEEEE-S-BS--CTS------SSS-TS----CTSCTTTSGGHHHHHHHHHHHHHHH--------HTT
T ss_pred -HHHHHHHhhcCCEEEEeccccc--cCc------ccc-CC----ccccCCCCHHHHHHHHHHHHHHHHc--------CcC
Confidence 3778999999999998875410 010 000 00 0012345788899999999999999 999
Q ss_pred CCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCC
Q 014426 184 EPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGL 231 (425)
Q Consensus 184 ~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 231 (425)
||+|++|.+.||+ ....+++++.+.+|++||+++|+..+
T Consensus 120 HPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 120 HPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp -TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred cCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 9999999999999 25677899999999999999999765
No 5
>TIGR03356 BGL beta-galactosidase.
Probab=99.84 E-value=2.6e-19 Score=182.21 Aligned_cols=283 Identities=16% Similarity=0.233 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC-CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS-PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~-~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
...+++|++.|+++|+|++|+.+ .|.+++|. +|.+|++.++.+|.+|++|.++||.+|++|+++ + .|
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si----~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf-d-------~P 120 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSI----AWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHW-D-------LP 120 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEccc----chhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccC-C-------cc
Confidence 57899999999999999999955 36678887 688999999999999999999999999999864 2 25
Q ss_pred hhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC---------C---Ch
Q 014426 137 NWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD---------P---SG 204 (425)
Q Consensus 137 ~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~---------~---~~ 204 (425)
.|....|+ |.+++..+.|.+|++.+++| |++. |-.|++.|||+.... | +.
T Consensus 121 ~~l~~~gG--------w~~~~~~~~f~~ya~~~~~~--------~~d~--v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~ 182 (427)
T TIGR03356 121 QALEDRGG--------WLNRDTAEWFAEYAAVVAER--------LGDR--VKHWITLNEPWCSAFLGYGLGVHAPGLRDL 182 (427)
T ss_pred HHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hCCc--CCEEEEecCcceecccchhhccCCCCCccH
Confidence 56443332 67899999999999999999 9995 667999999985421 1 11
Q ss_pred H-H------HHHHHHHHHHHhhccCCCceEEeCCCC--ccCCCC-Ccc-------------ccCCCCCCccccch-----
Q 014426 205 K-T------IQAWITEMASYVKSIDGNHLLEAGLEG--FYGPSS-SEK-------------QQYNPNFQVGTDFI----- 256 (425)
Q Consensus 205 ~-~------~~~w~~~~~~~Ir~~dp~~lV~~G~~g--~~~~~~-~~~-------------~~~np~~~~g~df~----- 256 (425)
. . +..-..++.+.+|+..|+..|.+-... ++..+. +.+ +-.+|- ..| ++.
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~-~~G-~yP~~~~~ 260 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPL-LKG-RYPEDLLE 260 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHH-hCC-CCCHHHHH
Confidence 1 1 111224566778888887666553221 222110 000 000010 000 000
Q ss_pred ------------hhcCCCCCcEEEEecCCCCCCCCC-----------Cc-h---hhhHHHHHHHHHHHHHHHhcCCC-cE
Q 014426 257 ------------ANNQIPGIDFATLHSYPDQWLPSS-----------SD-E---SQTSFLNNWLYNHIQDAQDTLRK-PI 308 (425)
Q Consensus 257 ------------~~~~~~~iD~~s~H~Y~~~w~~~~-----------~~-~---~~~~~~~~~i~~~~~~a~~~~~k-Pv 308 (425)
.......+||+++.+|........ .. + ..+.....-|...+....+.+++ ||
T Consensus 261 ~l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi 340 (427)
T TIGR03356 261 YLGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPI 340 (427)
T ss_pred HhccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCE
Confidence 000124679999999964321100 00 0 00111233455555555444777 79
Q ss_pred EEEeccCCCCC---CC---chhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--CCCCCCCCceEEeCC
Q 014426 309 LLAEFGKSLKT---SG---ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE--GLDSYRDGYEVIFSE 372 (425)
Q Consensus 309 ~i~EfG~~~~~---~~---~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~--g~~~~~dg~~i~~~~ 372 (425)
+|+|.|+...+ .+ .+.|..|++..+..+.+++..|..+.|++.|++.|+ ....+...|++++.+
T Consensus 341 ~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD 412 (427)
T TIGR03356 341 YITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVD 412 (427)
T ss_pred EEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEEC
Confidence 99999997432 11 238999999999999999999999999999999997 223355678888763
No 6
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.83 E-value=8.1e-19 Score=195.15 Aligned_cols=233 Identities=18% Similarity=0.258 Sum_probs=158.4
Q ss_pred CCCc--EEEeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCC
Q 014426 20 DDGF--ITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN 97 (425)
Q Consensus 20 ~~~f--v~v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~ 97 (425)
+.|| |+++++.|.+||+|++++|+|.+........+.+++.++++|+.||++|+|+||++.... +
T Consensus 314 ~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~-------------~ 380 (1021)
T PRK10340 314 RVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPN-------------D 380 (1021)
T ss_pred eeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCC-------------C
Confidence 4566 777899999999999999999764332222234578999999999999999999964321 1
Q ss_pred hHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Q 014426 98 EQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177 (425)
Q Consensus 98 ~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~t 177 (425)
.+++++|.++||+|+-+.. .+. . |.. . .+ ....++.+|...+.+.+.++.++.|
T Consensus 381 -------~~fydlcDe~GllV~dE~~-~e~-~-g~~------~-~~----~~~~~~~~p~~~~~~~~~~~~mV~R----- 434 (1021)
T PRK10340 381 -------PRFYELCDIYGLFVMAETD-VES-H-GFA------N-VG----DISRITDDPQWEKVYVDRIVRHIHA----- 434 (1021)
T ss_pred -------HHHHHHHHHCCCEEEECCc-ccc-c-Ccc------c-cc----ccccccCCHHHHHHHHHHHHHHHHh-----
Confidence 2678999999999988762 110 0 100 0 00 0011245678888999999999999
Q ss_pred ccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchh
Q 014426 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIA 257 (425)
Q Consensus 178 g~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~ 257 (425)
++|||+|+.|.+.||.... .. +++|++.+|++||.++|+.....
T Consensus 435 ---drNHPSIi~WslGNE~~~g-----~~----~~~~~~~~k~~DptR~v~~~~~~------------------------ 478 (1021)
T PRK10340 435 ---QKNHPSIIIWSLGNESGYG-----CN----IRAMYHAAKALDDTRLVHYEEDR------------------------ 478 (1021)
T ss_pred ---CCCCCEEEEEECccCcccc-----HH----HHHHHHHHHHhCCCceEEeCCCc------------------------
Confidence 9999999999999998543 22 37899999999999999864210
Q ss_pred hcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCC-CchhhhHHHHHHHHHH
Q 014426 258 NNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTS-GANQRDQLFDTVYSAI 336 (425)
Q Consensus 258 ~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~-~~~~r~~~~~~~~~~~ 336 (425)
.....|+++. +|+.. + .+..+ .+...+||+++.|++-...++ + ..++|.. .+
T Consensus 479 --~~~~~Dv~~~-~Y~~~-----------~----~~~~~---~~~~~~kP~i~~Ey~hamgn~~g--~~~~yw~----~~ 531 (1021)
T PRK10340 479 --DAEVVDVIST-MYTRV-----------E----LMNEF---GEYPHPKPRILCEYAHAMGNGPG--GLTEYQN----VF 531 (1021)
T ss_pred --Cccccceecc-ccCCH-----------H----HHHHH---HhCCCCCcEEEEchHhccCCCCC--CHHHHHH----HH
Confidence 0135688885 35421 1 12221 111147999999998654432 2 2234432 22
Q ss_pred HHHhhcCCCcccccccccccCC
Q 014426 337 YLSARSGGAAVGGMFWQLFTEG 358 (425)
Q Consensus 337 ~~~~~~~~~~~G~~~W~~~~~g 358 (425)
.+ .....|.++|.|.|.|
T Consensus 532 ~~----~p~l~GgfiW~~~D~~ 549 (1021)
T PRK10340 532 YK----HDCIQGHYVWEWCDHG 549 (1021)
T ss_pred Hh----CCceeEEeeeecCccc
Confidence 22 2578999999999974
No 7
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.81 E-value=2.7e-18 Score=190.63 Aligned_cols=244 Identities=17% Similarity=0.247 Sum_probs=157.2
Q ss_pred CCCc--EEEeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCC
Q 014426 20 DDGF--ITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN 97 (425)
Q Consensus 20 ~~~f--v~v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~ 97 (425)
+.|| |++++++|.+||+|++++|+|.+........+.+++.++++|+.||++|+|+||+....+ +
T Consensus 330 ~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~-------------~ 396 (1027)
T PRK09525 330 DVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPN-------------H 396 (1027)
T ss_pred eEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCC-------------C
Confidence 4566 777899999999999999999763322222234678999999999999999999954321 1
Q ss_pred hHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Q 014426 98 EQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177 (425)
Q Consensus 98 ~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~t 177 (425)
.+++++|.++||+|+-+..- . .. |+ ++ ......+|...+.+.+.++.++.|
T Consensus 397 -------p~fydlcDe~GilV~dE~~~-e-~h-g~--~~------------~~~~~~dp~~~~~~~~~~~~mV~R----- 447 (1027)
T PRK09525 397 -------PLWYELCDRYGLYVVDEANI-E-TH-GM--VP------------MNRLSDDPRWLPAMSERVTRMVQR----- 447 (1027)
T ss_pred -------HHHHHHHHHcCCEEEEecCc-c-cc-CC--cc------------ccCCCCCHHHHHHHHHHHHHHHHh-----
Confidence 36789999999999987531 1 00 11 00 012245688889999999999999
Q ss_pred ccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchh
Q 014426 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIA 257 (425)
Q Consensus 178 g~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~ 257 (425)
++|||+|++|.+.||+.... . ..+|.+.+|++||.++|+..+.+. .
T Consensus 448 ---drNHPSIi~WSlgNE~~~g~-----~----~~~l~~~~k~~DptRpV~y~~~~~-~--------------------- 493 (1027)
T PRK09525 448 ---DRNHPSIIIWSLGNESGHGA-----N----HDALYRWIKSNDPSRPVQYEGGGA-D--------------------- 493 (1027)
T ss_pred ---CCCCCEEEEEeCccCCCcCh-----h----HHHHHHHHHhhCCCCcEEECCCCC-C---------------------
Confidence 99999999999999986531 1 367889999999999999743111 0
Q ss_pred hcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCchhhhHHHHHHHHHHH
Q 014426 258 NNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIY 337 (425)
Q Consensus 258 ~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~~~~~r~~~~~~~~~~~~ 337 (425)
....|+++. +|+...............+..|+.. . ..+||+++.|||-...++.. ...+| .+.+.
T Consensus 494 ---~~~~Dv~~~-my~~~~~~~~~~~~~~~~~~~~~~~----~--~~~kP~i~cEY~Hamgn~~g-~l~~y----w~~~~ 558 (1027)
T PRK09525 494 ---TAATDIICP-MYARVDEDQPFPAVPKWSIKKWISL----P--GETRPLILCEYAHAMGNSLG-GFAKY----WQAFR 558 (1027)
T ss_pred ---CCccccccC-CCCCccccccccccchHHHHHHHhc----C--CCCCCEEEEechhcccCcCc-cHHHH----HHHHh
Confidence 122455443 2322110000000000012222221 1 13699999999955443211 22333 22222
Q ss_pred HHhhcCCCcccccccccccCC
Q 014426 338 LSARSGGAAVGGMFWQLFTEG 358 (425)
Q Consensus 338 ~~~~~~~~~~G~~~W~~~~~g 358 (425)
+.....|.++|.|.|.|
T Consensus 559 ----~~~~~~GgfIW~w~Dqg 575 (1027)
T PRK09525 559 ----QYPRLQGGFIWDWVDQG 575 (1027)
T ss_pred ----cCCCeeEEeeEeccCcc
Confidence 23568999999999975
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.80 E-value=1.3e-18 Score=174.92 Aligned_cols=265 Identities=22% Similarity=0.332 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVN 137 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~ 137 (425)
++.+++||+.|+++|+|+||+..+. |..+||.+|.|| |..||++|+.|+++||+|+|.+... ..|.
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~---W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~--------~~P~ 74 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFS---WSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA--------APPA 74 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCE---HHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT--------TS-H
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEec---hhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc--------cccc
Confidence 4799999999999999999985542 446899999998 7889999999999999999987533 1256
Q ss_pred hhhhc----------CCCC--C-CCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC---
Q 014426 138 WARGQ----------GQSI--S-SDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD--- 201 (425)
Q Consensus 138 W~~~~----------g~~~--~-~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~--- 201 (425)
|.... |... . ....-+.+|..++.++++++.+++| |+++|+|++|+|.|||.+..+
T Consensus 75 Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~~~ 146 (374)
T PF02449_consen 75 WLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCYSP 146 (374)
T ss_dssp HHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--SH
T ss_pred chhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCCCh
Confidence 65431 1000 0 0111255789999999999999999 999999999999999977321
Q ss_pred -----------------------------------------C---C---------------hHHHHHHHHHHHHHhhccC
Q 014426 202 -----------------------------------------P---S---------------GKTIQAWITEMASYVKSID 222 (425)
Q Consensus 202 -----------------------------------------~---~---------------~~~~~~w~~~~~~~Ir~~d 222 (425)
| . .+.+.++++.+++.||+.+
T Consensus 147 ~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~ 226 (374)
T PF02449_consen 147 ACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYD 226 (374)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 0 0345566788899999999
Q ss_pred CCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCC-CCCCCCchhhhHHHHHHHHHHHHHHH
Q 014426 223 GNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQ-WLPSSSDESQTSFLNNWLYNHIQDAQ 301 (425)
Q Consensus 223 p~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~-w~~~~~~~~~~~~~~~~i~~~~~~a~ 301 (425)
|+++|+....+.. . .+.|+... ...+|+++++.||.. +...........+. .+..+..
T Consensus 227 p~~~vt~n~~~~~--~------------~~~d~~~~--a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~----~dl~R~~- 285 (374)
T PF02449_consen 227 PDHPVTTNFMGSW--F------------NGIDYFKW--AKYLDVVSWDSYPDGSFDFYDDDPYSLAFN----HDLMRSL- 285 (374)
T ss_dssp TT-EEE-EE-TT-----------------SS-HHHH--GGGSSSEEEEE-HHHHHTTTT--TTHHHHH----HHHHHHH-
T ss_pred CCceEEeCccccc--c------------CcCCHHHH--HhhCCcceeccccCcccCCCCCCHHHHHHH----HHHHHhh-
Confidence 9999997533210 0 11233221 356899999999871 00111111111222 1222222
Q ss_pred hcCCCcEEEEeccCCCCCC---CchhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--CCCCCCCCceEEeCCC
Q 014426 302 DTLRKPILLAEFGKSLKTS---GANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE--GLDSYRDGYEVIFSEN 373 (425)
Q Consensus 302 ~~~~kPv~i~EfG~~~~~~---~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~--g~~~~~dg~~i~~~~~ 373 (425)
+ .+||++|.|.-.....- ....+...++.+. +.++. .+..|.++|+|... |...+ .++|+..++
T Consensus 286 ~-~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~---~~~~A--~Ga~~i~~~~wr~~~~g~E~~--~~g~~~~dg 354 (374)
T PF02449_consen 286 A-KGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWS---WQAIA--HGADGILFWQWRQSRFGAEQF--HGGLVDHDG 354 (374)
T ss_dssp T-TT--EEEEEE--S--SSSSS-----TTHHHHHH---HHHHH--TT-S-EEEC-SB--SSSTTTT--S--SB-TTS
T ss_pred c-CCCceEeecCCCCCCCCccCCCCCCCCHHHHHH---HHHHH--HhCCeeEeeeccCCCCCchhh--hcccCCccC
Confidence 2 68999999995442211 1112222222222 22222 25778899999875 22222 567776666
No 9
>PLN02814 beta-glucosidase
Probab=99.79 E-value=8.1e-18 Score=173.60 Aligned_cols=284 Identities=17% Similarity=0.231 Sum_probs=185.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC-CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS-PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~-~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
...+++|++.||++|+|+.|+-+ .|++++|. +|.+|+++++.++++|+++.++||.+++||++ |+ .|
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSI----sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-~d-------lP 143 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSI----SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-YD-------LP 143 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEec----cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------CC
Confidence 57899999999999999999844 46688874 57899999999999999999999999999986 43 26
Q ss_pred hhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC--------C---C-
Q 014426 137 NWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD--------P---S- 203 (425)
Q Consensus 137 ~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~--------~---~- 203 (425)
.|.... |+ |.++++.+.|.+|++.+++| |+|. |-.|...|||++... + +
T Consensus 144 ~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~pg~~~~ 205 (504)
T PLN02814 144 QSLEDEYGG--------WINRKIIEDFTAFADVCFRE--------FGED--VKLWTTINEATIFAIGSYGQGIRYGHCSP 205 (504)
T ss_pred HHHHHhcCC--------cCChhHHHHHHHHHHHHHHH--------hCCc--CCEEEeccccchhhhcccccCcCCCCCCc
Confidence 666542 32 78999999999999999999 9996 778999999985421 0 0
Q ss_pred --------h----HHHHHH------HHHHHHHhhcc---CCCceEEeCCC--CccCCCC-Ccc-------------ccCC
Q 014426 204 --------G----KTIQAW------ITEMASYVKSI---DGNHLLEAGLE--GFYGPSS-SEK-------------QQYN 246 (425)
Q Consensus 204 --------~----~~~~~w------~~~~~~~Ir~~---dp~~lV~~G~~--g~~~~~~-~~~-------------~~~n 246 (425)
+ +.++.- ...+.+.+|+. .|+..|.+-.. .++..+. +++ .-.+
T Consensus 206 ~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~d 285 (504)
T PLN02814 206 NKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLK 285 (504)
T ss_pred ccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhH
Confidence 0 111211 13445667764 56555544321 1222111 000 0001
Q ss_pred CCCCcc--c----c--------ch---hhcCCCCCcEEEEecCCCCCCCC---C--------Cc------------h---
Q 014426 247 PNFQVG--T----D--------FI---ANNQIPGIDFATLHSYPDQWLPS---S--------SD------------E--- 283 (425)
Q Consensus 247 p~~~~g--~----d--------f~---~~~~~~~iD~~s~H~Y~~~w~~~---~--------~~------------~--- 283 (425)
|- ..| . + |. .......+||+++++|....... . .. +
T Consensus 286 p~-~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (504)
T PLN02814 286 PL-VFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSF 364 (504)
T ss_pred HH-hCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCC
Confidence 10 000 0 0 00 00012457999999995322110 0 00 0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCC-cEEEEeccCCCCCCC---chhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--
Q 014426 284 SQTSFLNNWLYNHIQDAQDTLRK-PILLAEFGKSLKTSG---ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE-- 357 (425)
Q Consensus 284 ~~~~~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~-- 357 (425)
-.++....-|...+...++.+++ ||+|+|.|+.....+ .+.|.+|++..+.++.+++..|..+.|++.|++.|+
T Consensus 365 ~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfE 444 (504)
T PLN02814 365 FEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYE 444 (504)
T ss_pred CCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhc
Confidence 00111233344445444444666 799999999744321 238999999999999999999999999999999997
Q ss_pred CCCCCCCCceEEeCC
Q 014426 358 GLDSYRDGYEVIFSE 372 (425)
Q Consensus 358 g~~~~~dg~~i~~~~ 372 (425)
....+...|++++.+
T Consensus 445 W~~Gy~~RfGLvyVD 459 (504)
T PLN02814 445 LLGGYTTSFGMYYVN 459 (504)
T ss_pred hhccccCccceEEEC
Confidence 233355678888753
No 10
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.79 E-value=1.3e-17 Score=171.43 Aligned_cols=284 Identities=17% Similarity=0.213 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC--CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS--PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~--~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
..++++|++.|+++|+|+.|+-+ .|++++|. +|.+|+++++.++++|+++.++||.++++|++ |+ .
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-~d-------l 139 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRMSI----AWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-FD-------C 139 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEEec----chhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-cC-------C
Confidence 57899999999999999999844 46788885 45689999999999999999999999999986 43 2
Q ss_pred hhhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC----------CCh
Q 014426 136 VNWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD----------PSG 204 (425)
Q Consensus 136 ~~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~----------~~~ 204 (425)
|.|.... |+ |.++++.+.|.+|++.+++| |+|. |-.|..+|||++... +.+
T Consensus 140 P~~L~~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~~~~~~g~~~~~g 201 (478)
T PRK09593 140 PMHLIEEYGG--------WRNRKMVGFYERLCRTLFTR--------YKGL--VKYWLTFNEINMILHAPFMGAGLYFEEG 201 (478)
T ss_pred CHHHHhhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEeecchhhhhcccccccCcccCCC
Confidence 6666432 32 78999999999999999999 9996 778999999985321 111
Q ss_pred --H---HHHHH------HHHHHHHhhccCCCceEEeCCCC--ccCCCC-Ccc------------ccCCCCCCcc------
Q 014426 205 --K---TIQAW------ITEMASYVKSIDGNHLLEAGLEG--FYGPSS-SEK------------QQYNPNFQVG------ 252 (425)
Q Consensus 205 --~---~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g--~~~~~~-~~~------------~~~np~~~~g------ 252 (425)
. .++.- ...+.+.+|+..|+..|.+-... ++..+. +++ .-.+|. ..|
T Consensus 202 ~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~-~~G~YP~~~ 280 (478)
T PRK09593 202 ENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQ-ARGEYPNYA 280 (478)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhh-hCCCccHHH
Confidence 0 11211 23456778888887666553322 121110 000 000110 000
Q ss_pred ----------ccch----hhcCCCCCcEEEEecCCCCCCCCCC------c---------h------hhhHHHHHHHHHHH
Q 014426 253 ----------TDFI----ANNQIPGIDFATLHSYPDQWLPSSS------D---------E------SQTSFLNNWLYNHI 297 (425)
Q Consensus 253 ----------~df~----~~~~~~~iD~~s~H~Y~~~w~~~~~------~---------~------~~~~~~~~~i~~~~ 297 (425)
..|. .......+||+++++|-........ . + -.++.....|...+
T Consensus 281 ~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l 360 (478)
T PRK09593 281 KKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITL 360 (478)
T ss_pred HHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHH
Confidence 0000 0111356799999999543221100 0 0 01122334455555
Q ss_pred HHHHhcCCCcEEEEeccCCCCCC----C---chhhhHHHHHHHHHHHHHhh-cCCCcccccccccccC--CCCC-CCCCc
Q 014426 298 QDAQDTLRKPILLAEFGKSLKTS----G---ANQRDQLFDTVYSAIYLSAR-SGGAAVGGMFWQLFTE--GLDS-YRDGY 366 (425)
Q Consensus 298 ~~a~~~~~kPv~i~EfG~~~~~~----~---~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~--g~~~-~~dg~ 366 (425)
....+.+++||+|+|.|+...+. + .+.|.+|++..+..+.++++ .|..+.|++.|++.|+ .... +...|
T Consensus 361 ~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~Rf 440 (478)
T PRK09593 361 NTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRY 440 (478)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCee
Confidence 55544478999999999974321 1 13799999999999999985 8889999999999997 2233 44568
Q ss_pred eEEeCC
Q 014426 367 EVIFSE 372 (425)
Q Consensus 367 ~i~~~~ 372 (425)
++++.+
T Consensus 441 Gl~~VD 446 (478)
T PRK09593 441 GFIYVD 446 (478)
T ss_pred ceEEEC
Confidence 888763
No 11
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.78 E-value=3.1e-17 Score=168.70 Aligned_cols=284 Identities=17% Similarity=0.167 Sum_probs=187.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC--CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS--PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~--~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
..++++|++.|+++|+|+.|+-+ .|.+++|. .+.+|+++++.++++|+++.++||.++++|++ |+ .
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-~d-------l 133 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSI----AWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-FE-------M 133 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEecc----chhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------C
Confidence 57899999999999999999844 46688875 45689999999999999999999999999986 43 2
Q ss_pred hhhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCC-----------C--
Q 014426 136 VNWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYA-----------D-- 201 (425)
Q Consensus 136 ~~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~-----------~-- 201 (425)
|.|.... |+ |.++++.+.|.+|++.+++| |+|. |-.|...|||++.. .
T Consensus 134 P~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~~~~~~g~ 195 (476)
T PRK09589 134 PYHLVTEYGG--------WRNRKLIDFFVRFAEVVFTR--------YKDK--VKYWMTFNEINNQANFSEDFAPFTNSGI 195 (476)
T ss_pred CHHHHHhcCC--------cCChHHHHHHHHHHHHHHHH--------hcCC--CCEEEEecchhhhhccccccCCcccccc
Confidence 5666432 32 78999999999999999999 9996 77899999998531 0
Q ss_pred --CCh----H-HHHHH------HHHHHHHhhccCCCceEEeCCC--CccCCCC-Ccc------------ccCCCC----C
Q 014426 202 --PSG----K-TIQAW------ITEMASYVKSIDGNHLLEAGLE--GFYGPSS-SEK------------QQYNPN----F 249 (425)
Q Consensus 202 --~~~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~G~~--g~~~~~~-~~~------------~~~np~----~ 249 (425)
+.+ . .++.- ..++.+.+|+..|+..|.+... .++..+. +.+ .-.+|- +
T Consensus 196 ~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~Y 275 (476)
T PRK09589 196 LYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYY 275 (476)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCC
Confidence 111 0 11211 1345567788888755543221 1222111 000 000110 0
Q ss_pred ---------Cccc--cch----hhcCCCCCcEEEEecCCCCCCCC----C-----C------ch------hhhHHHHHHH
Q 014426 250 ---------QVGT--DFI----ANNQIPGIDFATLHSYPDQWLPS----S-----S------DE------SQTSFLNNWL 293 (425)
Q Consensus 250 ---------~~g~--df~----~~~~~~~iD~~s~H~Y~~~w~~~----~-----~------~~------~~~~~~~~~i 293 (425)
..+. +|. ..+....+||+++++|....... . . .+ -.++....-|
T Consensus 276 P~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl 355 (476)
T PRK09589 276 PQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGL 355 (476)
T ss_pred cHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHH
Confidence 0000 000 01113567999999996433210 0 0 00 0112233445
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCC----C---chhhhHHHHHHHHHHHHHh-hcCCCcccccccccccC--CCCC-C
Q 014426 294 YNHIQDAQDTLRKPILLAEFGKSLKTS----G---ANQRDQLFDTVYSAIYLSA-RSGGAAVGGMFWQLFTE--GLDS-Y 362 (425)
Q Consensus 294 ~~~~~~a~~~~~kPv~i~EfG~~~~~~----~---~~~r~~~~~~~~~~~~~~~-~~~~~~~G~~~W~~~~~--g~~~-~ 362 (425)
...+....+.+++||+|+|.|+...+. + .+.|..|++..+.++.+++ ..|..+.|++.|++.|+ .... +
T Consensus 356 ~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y 435 (476)
T PRK09589 356 RYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEM 435 (476)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCcc
Confidence 555555544588999999999974321 1 1389999999999999998 78999999999999997 2233 4
Q ss_pred CCCceEEeC
Q 014426 363 RDGYEVIFS 371 (425)
Q Consensus 363 ~dg~~i~~~ 371 (425)
...|++++.
T Consensus 436 ~~RfGlv~V 444 (476)
T PRK09589 436 KKRYGFIYV 444 (476)
T ss_pred ccceeeEEE
Confidence 457888875
No 12
>PLN02998 beta-glucosidase
Probab=99.78 E-value=2.1e-17 Score=170.30 Aligned_cols=284 Identities=17% Similarity=0.227 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC-CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS-PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~-~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
...+++|++.|+++|+|+.|+-+ .|.+++|. .|.+|+++++.++++|+++.++||..+++|++ |+ .|
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-~d-------lP 148 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSI----SWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-FD-------LP 148 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeec----cHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------CC
Confidence 57899999999999999999844 36678874 57799999999999999999999999999986 43 25
Q ss_pred hhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC--------CChH--
Q 014426 137 NWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD--------PSGK-- 205 (425)
Q Consensus 137 ~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~--------~~~~-- 205 (425)
.|.... |+ |.++++.+.|.+|++.+++| |+|. |-.|...|||++... +.+.
T Consensus 149 ~~L~~~yGG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 210 (497)
T PLN02998 149 QALEDEYGG--------WLSQEIVRDFTAYADTCFKE--------FGDR--VSHWTTINEVNVFALGGYDQGITPPARCS 210 (497)
T ss_pred HHHHHhhCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEccCcchhhhcchhhcccCCCccc
Confidence 666542 32 78899999999999999999 9996 778999999996531 1110
Q ss_pred ---------------HHHHH------HHHHHHHhhcc---CCCceEEeCCCC--ccCCCC-Ccc-------------ccC
Q 014426 206 ---------------TIQAW------ITEMASYVKSI---DGNHLLEAGLEG--FYGPSS-SEK-------------QQY 245 (425)
Q Consensus 206 ---------------~~~~w------~~~~~~~Ir~~---dp~~lV~~G~~g--~~~~~~-~~~-------------~~~ 245 (425)
.++.- ...+.+.+|+. +++..|.+-... ++..+. +.+ .-.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~ 290 (497)
T PLN02998 211 PPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWIL 290 (497)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhh
Confidence 11211 13345666765 555555543221 221110 000 000
Q ss_pred CCCCCcc--c------------cch---hhcCCCCCcEEEEecCCCCCCCC---C--C--c---------------h---
Q 014426 246 NPNFQVG--T------------DFI---ANNQIPGIDFATLHSYPDQWLPS---S--S--D---------------E--- 283 (425)
Q Consensus 246 np~~~~g--~------------df~---~~~~~~~iD~~s~H~Y~~~w~~~---~--~--~---------------~--- 283 (425)
+|- ..| . +|. .......+||+++++|....... . + . .
T Consensus 291 dp~-~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (497)
T PLN02998 291 HPL-VFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIE 369 (497)
T ss_pred hHH-hCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCC
Confidence 010 000 0 000 00012457999999995332210 0 0 0 0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCC-cEEEEeccCCCCCCC---chhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--
Q 014426 284 SQTSFLNNWLYNHIQDAQDTLRK-PILLAEFGKSLKTSG---ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE-- 357 (425)
Q Consensus 284 ~~~~~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~-- 357 (425)
..++....-|...+...++.+++ ||+|+|.|+...+.+ .+.|.+|++..+..+.+++..|..+.|++.|++.|+
T Consensus 370 ~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfE 449 (497)
T PLN02998 370 NEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFE 449 (497)
T ss_pred CCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhc
Confidence 00111223345555454444777 699999999764221 238999999999999999999999999999999997
Q ss_pred CCCCCCCCceEEeCC
Q 014426 358 GLDSYRDGYEVIFSE 372 (425)
Q Consensus 358 g~~~~~dg~~i~~~~ 372 (425)
....+...|++++.+
T Consensus 450 W~~Gy~~RfGLv~VD 464 (497)
T PLN02998 450 LFGGYERSFGLLYVD 464 (497)
T ss_pred hhccccCccceEEEC
Confidence 233455678888763
No 13
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.77 E-value=5.2e-17 Score=166.76 Aligned_cols=284 Identities=16% Similarity=0.212 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC-CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS-PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~-~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
..++++|++.|+++|+|+.|+-+ .|++++|. +|.+|+++++.++++|+++.++||..+++|+++ + .|
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSI----sWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~-d-------lP 119 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISI----AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHF-D-------TP 119 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEec----chhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCC-C-------Cc
Confidence 57899999999999999999844 46678774 578999999999999999999999999999864 3 26
Q ss_pred hhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC--------CCh----
Q 014426 137 NWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD--------PSG---- 204 (425)
Q Consensus 137 ~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~--------~~~---- 204 (425)
.|....|+ |.++++.+.|.+|++.++++ |++ |-.|...|||++... +.+
T Consensus 120 ~~L~~~GG--------W~n~~~v~~F~~YA~~~f~~--------fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~ 180 (467)
T TIGR01233 120 EALHSNGD--------FLNRENIEHFIDYAAFCFEE--------FPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD 180 (467)
T ss_pred HHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEecchhhhhhccchhcccCCCccch
Confidence 67654443 78999999999999999999 983 778999999986421 111
Q ss_pred --HHHHHH------HHHHHHHhhccCCCceEEeCCCC--ccCCC--CCcc-------------ccCCCCCCcc--cc---
Q 014426 205 --KTIQAW------ITEMASYVKSIDGNHLLEAGLEG--FYGPS--SSEK-------------QQYNPNFQVG--TD--- 254 (425)
Q Consensus 205 --~~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g--~~~~~--~~~~-------------~~~np~~~~g--~d--- 254 (425)
..++.. ..++.+.+|+..|+..|.+-... ++..+ .+.+ .-.+|-. .| .+
T Consensus 181 ~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~-~G~Yp~~~~ 259 (467)
T TIGR01233 181 LAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATY-LGHYSDKTM 259 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhh-CCCCCHHHH
Confidence 111211 23456778888887767653322 22211 1100 0001100 00 00
Q ss_pred ---------------ch----hhcC--CCCCcEEEEecCCCCCCCC------------------------------CCc-
Q 014426 255 ---------------FI----ANNQ--IPGIDFATLHSYPDQWLPS------------------------------SSD- 282 (425)
Q Consensus 255 ---------------f~----~~~~--~~~iD~~s~H~Y~~~w~~~------------------------------~~~- 282 (425)
+. .... ...+||+++.+|-...... +..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (467)
T TIGR01233 260 EGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYV 339 (467)
T ss_pred HHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCC
Confidence 00 0011 2356999999994321100 000
Q ss_pred h-h--hhHHHHHHHHHHHHHHHhcCCC--cEEEEeccCCCCC---CC---chhhhHHHHHHHHHHHHHhhcCCCcccccc
Q 014426 283 E-S--QTSFLNNWLYNHIQDAQDTLRK--PILLAEFGKSLKT---SG---ANQRDQLFDTVYSAIYLSARSGGAAVGGMF 351 (425)
Q Consensus 283 ~-~--~~~~~~~~i~~~~~~a~~~~~k--Pv~i~EfG~~~~~---~~---~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~ 351 (425)
+ . .++....-|...+...++.+++ ||+|+|.|+...+ .+ .+.|.+|++..+..+.+++..|..+.|++.
T Consensus 340 ~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~ 419 (467)
T TIGR01233 340 PRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFI 419 (467)
T ss_pred CcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0 0 0112234455555555444766 7999999997432 11 138999999999999999999999999999
Q ss_pred cccccC--CCCCCCCCceEEeCCC
Q 014426 352 WQLFTE--GLDSYRDGYEVIFSEN 373 (425)
Q Consensus 352 W~~~~~--g~~~~~dg~~i~~~~~ 373 (425)
|++.|+ ....+...|++++.+-
T Consensus 420 WSl~Dn~Ew~~Gy~~RfGLv~VD~ 443 (467)
T TIGR01233 420 WSLMDVFSWSNGYEKRYGLFYVDF 443 (467)
T ss_pred ccchhhhchhccccCccceEEECC
Confidence 999997 2333556788888643
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.77 E-value=4.3e-17 Score=167.74 Aligned_cols=285 Identities=15% Similarity=0.206 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC-CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS-PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~-~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
...+++|++.|+++|+|+.|+-+ .|.++.|. .|.+|++.++.++++|+++.++||..+++|+++ + .|
T Consensus 53 Y~ry~eDi~L~~~lG~~~yRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~-d-------lP 120 (469)
T PRK13511 53 YHRYPEDLKLAEEFGVNGIRISI----AWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHF-D-------TP 120 (469)
T ss_pred hhhhHHHHHHHHHhCCCEEEeec----cHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCC-C-------Cc
Confidence 57899999999999999999844 46688874 467999999999999999999999999999864 3 26
Q ss_pred hhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC--------CCh----
Q 014426 137 NWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD--------PSG---- 204 (425)
Q Consensus 137 ~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~--------~~~---- 204 (425)
.|....|+ |.++++.+.|.+|++.+++| |+| |-.|...|||++... +.+
T Consensus 121 ~~L~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~ 181 (469)
T PRK13511 121 EALHSNGD--------WLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD 181 (469)
T ss_pred HHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCCcc
Confidence 67654443 78999999999999999999 998 778999999986531 111
Q ss_pred --HHHHHH------HHHHHHHhhccCCCceEEeCCCC--ccCCC--CCcc-------------ccCCCC----CC----c
Q 014426 205 --KTIQAW------ITEMASYVKSIDGNHLLEAGLEG--FYGPS--SSEK-------------QQYNPN----FQ----V 251 (425)
Q Consensus 205 --~~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g--~~~~~--~~~~-------------~~~np~----~~----~ 251 (425)
..++.- ..++.+.+|+..++..|.+-... ++..+ .+++ +-.+|- +. .
T Consensus 182 ~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~ 261 (469)
T PRK13511 182 LAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETME 261 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHH
Confidence 111211 23445678887776555543221 22111 1100 000110 00 0
Q ss_pred ---------cc--cchh----hcCC--CCCcEEEEecCCCCCCCCC-----------------------------C-c-h
Q 014426 252 ---------GT--DFIA----NNQI--PGIDFATLHSYPDQWLPSS-----------------------------S-D-E 283 (425)
Q Consensus 252 ---------g~--df~~----~~~~--~~iD~~s~H~Y~~~w~~~~-----------------------------~-~-~ 283 (425)
|. .|.. .... ..+||+++++|........ . . +
T Consensus 262 ~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (469)
T PRK13511 262 GVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVP 341 (469)
T ss_pred HHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCC
Confidence 00 0000 0111 3479999999954321100 0 0 0
Q ss_pred -h--hhHHHHHHHHHHHHHHHhcCCC--cEEEEeccCCCCCC----C---chhhhHHHHHHHHHHHHHhhcCCCcccccc
Q 014426 284 -S--QTSFLNNWLYNHIQDAQDTLRK--PILLAEFGKSLKTS----G---ANQRDQLFDTVYSAIYLSARSGGAAVGGMF 351 (425)
Q Consensus 284 -~--~~~~~~~~i~~~~~~a~~~~~k--Pv~i~EfG~~~~~~----~---~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~ 351 (425)
. .++....-|...+...++.+++ ||+|+|.|+...+. + .+.|.+|++..+..+.+++..|..+.|+++
T Consensus 342 ~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~ 421 (469)
T PRK13511 342 TTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFI 421 (469)
T ss_pred cCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0 0011123344444444444665 79999999974321 1 138999999999999999999999999999
Q ss_pred cccccC--CCCCCCCCceEEeCCC
Q 014426 352 WQLFTE--GLDSYRDGYEVIFSEN 373 (425)
Q Consensus 352 W~~~~~--g~~~~~dg~~i~~~~~ 373 (425)
|++.|+ ....+...|++++.+-
T Consensus 422 WSl~DnfEW~~Gy~~RfGl~~VD~ 445 (469)
T PRK13511 422 WSLMDVFSWSNGYEKRYGLFYVDF 445 (469)
T ss_pred cccccccchhcCccCccceEEECC
Confidence 999997 2333556788887643
No 15
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.77 E-value=6.2e-17 Score=166.34 Aligned_cols=284 Identities=16% Similarity=0.163 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC--CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS--PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~--~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
...+++|++.|+++|+|+.|+-+ .|+++.|. .+..|++.++.++++|+++.++||.++++|+++ + .
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~-d-------l 135 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSI----AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF-E-------M 135 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecc----cceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-C-------C
Confidence 46899999999999999999954 36678775 456899999999999999999999999999864 2 2
Q ss_pred hhhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCC-----C-----C---
Q 014426 136 VNWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCY-----A-----D--- 201 (425)
Q Consensus 136 ~~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~-----~-----~--- 201 (425)
|.|.... |+ |.++++.+.|.+|++.+++| |+|. |-.|...|||+.. . .
T Consensus 136 P~~L~~~yGG--------W~n~~~~~~F~~Ya~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~gy~~~g~ 197 (477)
T PRK15014 136 PLHLVQQYGS--------WTNRKVVDFFVRFAEVVFER--------YKHK--VKYWMTFNEINNQRNWRAPLFGYCCSGV 197 (477)
T ss_pred CHHHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEEecCccccccccccccccccccc
Confidence 5566432 32 78899999999999999999 9996 7789999999742 1 0
Q ss_pred --CCh----H-HHHHH------HHHHHHHhhccCCCceEEeCCCC--ccCCCC-Ccc-----------c-cCCCC----C
Q 014426 202 --PSG----K-TIQAW------ITEMASYVKSIDGNHLLEAGLEG--FYGPSS-SEK-----------Q-QYNPN----F 249 (425)
Q Consensus 202 --~~~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g--~~~~~~-~~~-----------~-~~np~----~ 249 (425)
+.+ . .++.- ...+.+.+|+..|+..|.+-... ++..+. +++ . -.+|. +
T Consensus 198 ~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~Y 277 (477)
T PRK15014 198 VYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYY 277 (477)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCC
Confidence 111 0 11211 23456778888887666553321 222111 000 0 01111 0
Q ss_pred ---------Cccc--cch----hhcCCCCCcEEEEecCCCCCCCC---------------CCc-----hhhhHHHHHHHH
Q 014426 250 ---------QVGT--DFI----ANNQIPGIDFATLHSYPDQWLPS---------------SSD-----ESQTSFLNNWLY 294 (425)
Q Consensus 250 ---------~~g~--df~----~~~~~~~iD~~s~H~Y~~~w~~~---------------~~~-----~~~~~~~~~~i~ 294 (425)
..+. ++. .......+||+++++|....... ... +-.++....-|.
T Consensus 278 P~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~ 357 (477)
T PRK15014 278 PSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLR 357 (477)
T ss_pred CHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHH
Confidence 0000 000 00113467999999994321110 000 001122334455
Q ss_pred HHHHHHHhcCCCcEEEEeccCCCCCC----C---chhhhHHHHHHHHHHHHHhh-cCCCcccccccccccC--CCCC-CC
Q 014426 295 NHIQDAQDTLRKPILLAEFGKSLKTS----G---ANQRDQLFDTVYSAIYLSAR-SGGAAVGGMFWQLFTE--GLDS-YR 363 (425)
Q Consensus 295 ~~~~~a~~~~~kPv~i~EfG~~~~~~----~---~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~--g~~~-~~ 363 (425)
..+...++.+++||+|+|.|+...+. + .+.|.+|++..+..+.+++. .|..+.|++.|++.|+ .... +.
T Consensus 358 ~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~ 437 (477)
T PRK15014 358 YALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYS 437 (477)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCcc
Confidence 55555544588999999999975321 1 23899999999999999985 8999999999999997 3333 45
Q ss_pred CCceEEeC
Q 014426 364 DGYEVIFS 371 (425)
Q Consensus 364 dg~~i~~~ 371 (425)
..|++++.
T Consensus 438 ~RfGl~~V 445 (477)
T PRK15014 438 KRYGFIYV 445 (477)
T ss_pred CccceEEE
Confidence 67888775
No 16
>PLN02849 beta-glucosidase
Probab=99.76 E-value=5.7e-17 Score=167.29 Aligned_cols=283 Identities=17% Similarity=0.226 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC-CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS-PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~-~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
...+++|++.||++|+|+.|+-+ .|++++|. .|.+|+++++.++++|+++.++||..+++|++ |+ .|
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSI----sWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-~d-------lP 145 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSI----SWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-YD-------HP 145 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEec----cHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-CC-------Cc
Confidence 57899999999999999999844 46688875 36799999999999999999999999999986 43 36
Q ss_pred hhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC--------CCh---
Q 014426 137 NWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD--------PSG--- 204 (425)
Q Consensus 137 ~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~--------~~~--- 204 (425)
.|.... |+ |.++++.+.|.+|++.+++| |+|. |-.|...|||++... +.+
T Consensus 146 ~~L~~~yGG--------W~nr~~v~~F~~YA~~~f~~--------fgDr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 207 (503)
T PLN02849 146 QYLEDDYGG--------WINRRIIKDFTAYADVCFRE--------FGNH--VKFWTTINEANIFTIGGYNDGITPPGRCS 207 (503)
T ss_pred HHHHHhcCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEecchhhhhhchhhhccCCCCccc
Confidence 666542 33 78999999999999999999 9996 778999999985421 111
Q ss_pred -------------HHHHHH------HHHHHHHhhcc---CCCceEEeCCC--CccCCCC-Ccc-------------ccCC
Q 014426 205 -------------KTIQAW------ITEMASYVKSI---DGNHLLEAGLE--GFYGPSS-SEK-------------QQYN 246 (425)
Q Consensus 205 -------------~~~~~w------~~~~~~~Ir~~---dp~~lV~~G~~--g~~~~~~-~~~-------------~~~n 246 (425)
..++.- ...+.+.+|+. .|+..|.+-.. .++..+. +.+ .-.+
T Consensus 208 ~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~d 287 (503)
T PLN02849 208 SPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLE 287 (503)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhH
Confidence 011111 13345667765 25555554321 1222110 000 0001
Q ss_pred CCCCcc--cc------------ch---hhcCCCCCcEEEEecCCCCCCCC---------CC-------c--h----hhhH
Q 014426 247 PNFQVG--TD------------FI---ANNQIPGIDFATLHSYPDQWLPS---------SS-------D--E----SQTS 287 (425)
Q Consensus 247 p~~~~g--~d------------f~---~~~~~~~iD~~s~H~Y~~~w~~~---------~~-------~--~----~~~~ 287 (425)
|- ..| .+ |. .......+||+++++|-...... .. . . -.++
T Consensus 288 p~-~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~ 366 (503)
T PLN02849 288 PL-IFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYA 366 (503)
T ss_pred HH-hCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCe
Confidence 10 000 00 00 00012467999999995321110 00 0 0 0011
Q ss_pred HHHHHHHHHHHHHHhcCCC-cEEEEeccCCCCCC--C---chhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--CC
Q 014426 288 FLNNWLYNHIQDAQDTLRK-PILLAEFGKSLKTS--G---ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE--GL 359 (425)
Q Consensus 288 ~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~~--~---~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~--g~ 359 (425)
....-|...+...++.+++ ||+|+|.|+...+. + .+.|.+|++..+..+.+++..|..+.|++.|++.|+ ..
T Consensus 367 i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~ 446 (503)
T PLN02849 367 VAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELL 446 (503)
T ss_pred EChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh
Confidence 2223344445444444777 79999999975321 1 238999999999999999999999999999999997 23
Q ss_pred CCCCCCceEEeC
Q 014426 360 DSYRDGYEVIFS 371 (425)
Q Consensus 360 ~~~~dg~~i~~~ 371 (425)
..+...|++++.
T Consensus 447 ~Gy~~RfGLi~V 458 (503)
T PLN02849 447 KGYEFSFGLYSV 458 (503)
T ss_pred ccccCccceEEE
Confidence 335567888875
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.76 E-value=9.9e-17 Score=164.56 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=185.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC--CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS--PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~--~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
..++++|++.|+++|+|+.|+-+ .|.++.|. ++..|++.++.+|++|+++.++||.++++|+++ + .
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si----~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~-~-------~ 137 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSI----AWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF-D-------V 137 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeec----eeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-C-------C
Confidence 57889999999999999999954 35677764 456899999999999999999999999999864 2 2
Q ss_pred hhhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC----------CCh
Q 014426 136 VNWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD----------PSG 204 (425)
Q Consensus 136 ~~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~----------~~~ 204 (425)
|.|.... |+ |.++++.+.|.+|++.+++| |+|. |-.|...|||+.... +.+
T Consensus 138 P~~l~~~~GG--------W~~~~~~~~F~~ya~~~~~~--------fgd~--Vk~WiTfNEPn~~~~~gy~~~g~~~~p~ 199 (474)
T PRK09852 138 PMHLVTEYGS--------WRNRKMVEFFSRYARTCFEA--------FDGL--VKYWLTFNEINIMLHSPFSGAGLVFEEG 199 (474)
T ss_pred CHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHH--------hcCc--CCeEEeecchhhhhccCccccCcccCCC
Confidence 5565432 32 78899999999999999999 9996 677999999984310 111
Q ss_pred ----H-HHHHH------HHHHHHHhhccCCCceEEeCCCC--ccCCCC-Ccc--c----------cCCCC----C-----
Q 014426 205 ----K-TIQAW------ITEMASYVKSIDGNHLLEAGLEG--FYGPSS-SEK--Q----------QYNPN----F----- 249 (425)
Q Consensus 205 ----~-~~~~w------~~~~~~~Ir~~dp~~lV~~G~~g--~~~~~~-~~~--~----------~~np~----~----- 249 (425)
. .++.- ..++.+.+|+..|+..|.+-... ++..+. +++ . -.+|. +
T Consensus 200 ~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~ 279 (474)
T PRK09852 200 ENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSA 279 (474)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHH
Confidence 0 11221 13445667887777556543322 222110 000 0 00110 0
Q ss_pred ----Cccc--cchh---hcCCCCCcEEEEecCCCCCCCC--------CC-------ch------hhhHHHHHHHHHHHHH
Q 014426 250 ----QVGT--DFIA---NNQIPGIDFATLHSYPDQWLPS--------SS-------DE------SQTSFLNNWLYNHIQD 299 (425)
Q Consensus 250 ----~~g~--df~~---~~~~~~iD~~s~H~Y~~~w~~~--------~~-------~~------~~~~~~~~~i~~~~~~ 299 (425)
..+. +|.. ......+||+++.+|....... .. .+ -.++....-|...+..
T Consensus 280 ~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~ 359 (474)
T PRK09852 280 RVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNM 359 (474)
T ss_pred HHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHH
Confidence 0000 0000 0012457999999995322110 00 00 0112233445555555
Q ss_pred HHhcCCCcEEEEeccCCCCCC----C---chhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--CCCC-CCCCceEE
Q 014426 300 AQDTLRKPILLAEFGKSLKTS----G---ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE--GLDS-YRDGYEVI 369 (425)
Q Consensus 300 a~~~~~kPv~i~EfG~~~~~~----~---~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~--g~~~-~~dg~~i~ 369 (425)
.++.+++||+|+|.|+...+. + ...|..|+++.+.++.+++..|..+.|++.|++.|+ .... +...|+++
T Consensus 360 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv 439 (474)
T PRK09852 360 MYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFV 439 (474)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeE
Confidence 544488999999999974321 1 238999999999999999999999999999999997 2222 44568888
Q ss_pred eCC
Q 014426 370 FSE 372 (425)
Q Consensus 370 ~~~ 372 (425)
+.+
T Consensus 440 ~VD 442 (474)
T PRK09852 440 YVD 442 (474)
T ss_pred EEC
Confidence 763
No 18
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.5e-16 Score=158.88 Aligned_cols=283 Identities=20% Similarity=0.280 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCC--CCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPG--SYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g--~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
....++|++.|+++|+|+.|+-+ .|.++-|..+ ..|+++++.+|+++++|.++||..+++|+++ +.
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI----~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hf-d~------- 125 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSI----EWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHF-DL------- 125 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeee----eEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeccc-CC-------
Confidence 57899999999999999999954 3556666443 5999999999999999999999999999874 22
Q ss_pred hhhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC---------CC--
Q 014426 136 VNWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD---------PS-- 203 (425)
Q Consensus 136 ~~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~---------~~-- 203 (425)
|.|.... |+ |.+.+++++|.+|.+.+++| |+|. |-.|.+.|||++... +.
T Consensus 126 P~~L~~~ygG--------W~nR~~i~~F~~ya~~vf~~--------f~dk--Vk~W~TFNE~n~~~~~~y~~~~~~p~~~ 187 (460)
T COG2723 126 PLWLQKPYGG--------WENRETVDAFARYAATVFER--------FGDK--VKYWFTFNEPNVVVELGYLYGGHPPGIV 187 (460)
T ss_pred cHHHhhccCC--------ccCHHHHHHHHHHHHHHHHH--------hcCc--ceEEEEecchhhhhcccccccccCCCcc
Confidence 4454433 22 78999999999999999999 9985 888999999998642 11
Q ss_pred -h-HHHHHHH------HHHHHHhhccCCC--ceEEeCCCCccCCCC-Cc--------------------cccCCCCC---
Q 014426 204 -G-KTIQAWI------TEMASYVKSIDGN--HLLEAGLEGFYGPSS-SE--------------------KQQYNPNF--- 249 (425)
Q Consensus 204 -~-~~~~~w~------~~~~~~Ir~~dp~--~lV~~G~~g~~~~~~-~~--------------------~~~~np~~--- 249 (425)
. ..++... ..+.+.+|++.|+ .-++......|..+. ++ ..+..|.+
T Consensus 188 ~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~ 267 (460)
T COG2723 188 DPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEK 267 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHH
Confidence 1 1222222 2345677888886 223333333333221 10 01111210
Q ss_pred ---Ccc-------ccchhhcCCCCCcEEEEecCC-CC-----------CCCCCCc-----------hhhhHHHHHHHHHH
Q 014426 250 ---QVG-------TDFIANNQIPGIDFATLHSYP-DQ-----------WLPSSSD-----------ESQTSFLNNWLYNH 296 (425)
Q Consensus 250 ---~~g-------~df~~~~~~~~iD~~s~H~Y~-~~-----------w~~~~~~-----------~~~~~~~~~~i~~~ 296 (425)
..+ .|. ..+....+||+++++|- .. ++..... .-.++....-|...
T Consensus 268 ~~~~~~~~~~~~~~Dl-~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~ 346 (460)
T COG2723 268 ELEENGILPEIEDGDL-EILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDI 346 (460)
T ss_pred HHHhcCCCcccCcchH-HHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHH
Confidence 000 011 12234468999999996 21 1101000 00122333445555
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCC------CchhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--CCCCCCCCceE
Q 014426 297 IQDAQDTLRKPILLAEFGKSLKTS------GANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE--GLDSYRDGYEV 368 (425)
Q Consensus 297 ~~~a~~~~~kPv~i~EfG~~~~~~------~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~--g~~~~~dg~~i 368 (425)
+......+++|++|+|.|+...+. ..+.|.+|++..+..+.+++..|..+.|++.|++.|. ....+...|++
T Consensus 347 l~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGl 426 (460)
T COG2723 347 LEKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGL 426 (460)
T ss_pred HHHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhcccccccc
Confidence 555554488999999999764321 1138999999999999999999999999999999996 22335567888
Q ss_pred EeC
Q 014426 369 IFS 371 (425)
Q Consensus 369 ~~~ 371 (425)
++.
T Consensus 427 i~V 429 (460)
T COG2723 427 VYV 429 (460)
T ss_pred EEE
Confidence 776
No 19
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.75 E-value=1.2e-18 Score=179.28 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC--CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS--PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~--~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
...+++|++.|+++|+|+.|+-+ .|.+++|. .|.+|++.++.++++|+++.++||++|++|+++ + .
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi----~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~-~-------~ 124 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSI----SWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF-D-------L 124 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE------HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS----------
T ss_pred hhhhhHHHHHHHhhccceeeeec----chhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeec-c-------c
Confidence 57899999999999999999954 35678887 599999999999999999999999999999864 2 3
Q ss_pred hhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCC---------CC---C
Q 014426 136 VNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYA---------DP---S 203 (425)
Q Consensus 136 ~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~---------~~---~ 203 (425)
|.|....|+ |.++++.+.|.+|++.+++| |+|. |-.|...|||.... .| +
T Consensus 125 P~~l~~~gg--------w~~~~~~~~F~~Ya~~~~~~--------~gd~--V~~w~T~NEp~~~~~~~y~~g~~~p~~~~ 186 (455)
T PF00232_consen 125 PLWLEDYGG--------WLNRETVDWFARYAEFVFER--------FGDR--VKYWITFNEPNVFALLGYLYGGFPPGRDS 186 (455)
T ss_dssp BHHHHHHTG--------GGSTHHHHHHHHHHHHHHHH--------HTTT--BSEEEEEETHHHHHHHHHTSSSSTTCSST
T ss_pred ccceeeccc--------ccCHHHHHHHHHHHHHHHHH--------hCCC--cceEEeccccceeeccccccccccccccc
Confidence 677765442 78899999999999999999 9986 77799999998532 11 1
Q ss_pred hHH-------HHHHHHHHHHHhhccCCCceEEeCCCC--ccCCCC--Ccc--------------------ccCCCCC---
Q 014426 204 GKT-------IQAWITEMASYVKSIDGNHLLEAGLEG--FYGPSS--SEK--------------------QQYNPNF--- 249 (425)
Q Consensus 204 ~~~-------~~~w~~~~~~~Ir~~dp~~lV~~G~~g--~~~~~~--~~~--------------------~~~np~~--- 249 (425)
... +..-..++.+.+|+..|+..|.+.... ++..+. ++. .+..|..
T Consensus 187 ~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~ 266 (455)
T PF00232_consen 187 LKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKE 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHH
T ss_pred cchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhh
Confidence 111 122234567788888888877654321 111110 000 0001100
Q ss_pred ---Ccc--ccch---hhcCCCCCcEEEEecCCCCCCCCCC------------------------chhhhHHHHHHHHHHH
Q 014426 250 ---QVG--TDFI---ANNQIPGIDFATLHSYPDQWLPSSS------------------------DESQTSFLNNWLYNHI 297 (425)
Q Consensus 250 ---~~g--~df~---~~~~~~~iD~~s~H~Y~~~w~~~~~------------------------~~~~~~~~~~~i~~~~ 297 (425)
..+ ..|. .......+||+++++|......... ....+......|...+
T Consensus 267 ~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L 346 (455)
T PF00232_consen 267 YLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVL 346 (455)
T ss_dssp HHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHH
T ss_pred ccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhh
Confidence 000 0000 0111457899999999521110000 0000111123344444
Q ss_pred HHHHhcCC-CcEEEEeccCCCCCCC------chhhhHHHHHHHHHHHHHhhcCCCcccccccccccC--CCCCCCCCceE
Q 014426 298 QDAQDTLR-KPILLAEFGKSLKTSG------ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE--GLDSYRDGYEV 368 (425)
Q Consensus 298 ~~a~~~~~-kPv~i~EfG~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~--g~~~~~dg~~i 368 (425)
...++.++ +||+|+|.|++..... .+.|.+|++..+..+.++++.|..+.|+++|++.|+ ....+...|++
T Consensus 347 ~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl 426 (455)
T PF00232_consen 347 RYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGL 426 (455)
T ss_dssp HHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--S
T ss_pred hhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCc
Confidence 44433345 9999999999876531 138999999999999999999999999999999997 22233445676
Q ss_pred EeCC
Q 014426 369 IFSE 372 (425)
Q Consensus 369 ~~~~ 372 (425)
++.+
T Consensus 427 ~~VD 430 (455)
T PF00232_consen 427 VYVD 430 (455)
T ss_dssp EEEE
T ss_pred eEEc
Confidence 6654
No 20
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.69 E-value=1.6e-15 Score=144.23 Aligned_cols=272 Identities=18% Similarity=0.268 Sum_probs=136.3
Q ss_pred ccCCCCcEEEeCCeEEE--CCeeEEEEeecccccccc----CCCC-cchHHHHHHHHHHHHcCCCEEEEccccCCCCCCC
Q 014426 17 VKADDGFITAKGVHLML--NGSPFYANGFNAYWLMNT----GANP-YLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPL 89 (425)
Q Consensus 17 ~~~~~~fv~v~g~~f~~--~G~p~~~~G~N~~~~~~~----~~~~-~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~ 89 (425)
.++....|+++|.+|.. +|+.|+++|+.+.-.... ..|| .+.+..++|+..|+++|+|+||++.....
T Consensus 4 ~~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~----- 78 (314)
T PF03198_consen 4 AAAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPS----- 78 (314)
T ss_dssp SSTTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TT-----
T ss_pred hhccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCC-----
Confidence 34556789999999994 999999999995322221 1245 35678999999999999999999865321
Q ss_pred CcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCH--HHHHHHHHHHH
Q 014426 90 QYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNS--VVKQYYKNHIK 167 (425)
Q Consensus 90 q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~--~~~~~~~~~~~ 167 (425)
..-|..+....+.|||||++|... .+..+ . .+| ..-..+.+...
T Consensus 79 ------------~nHd~CM~~~~~aGIYvi~Dl~~p---~~sI~--------------r-----~~P~~sw~~~l~~~~~ 124 (314)
T PF03198_consen 79 ------------KNHDECMSAFADAGIYVILDLNTP---NGSIN--------------R-----SDPAPSWNTDLLDRYF 124 (314)
T ss_dssp ------------S--HHHHHHHHHTT-EEEEES-BT---TBS----------------T-----TS------HHHHHHHH
T ss_pred ------------CCHHHHHHHHHhCCCEEEEecCCC---Ccccc--------------C-----CCCcCCCCHHHHHHHH
Confidence 123788899999999999999653 11111 0 011 22223344445
Q ss_pred HHHhccccccccccCCCCcEEEEEeccCCCCCCCC--ChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccC
Q 014426 168 TVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADP--SGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQY 245 (425)
Q Consensus 168 ~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~--~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~ 245 (425)
.++.. ++..|+++++-.+||-...... ..+-+++.+++|-++||+... +.|.+|... .+.....
T Consensus 125 ~vid~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsa----aD~~~~r- 190 (314)
T PF03198_consen 125 AVIDA--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSA----ADDAEIR- 190 (314)
T ss_dssp HHHHH--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE-------TTTH-
T ss_pred HHHHH--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEc----cCChhHH-
Confidence 66666 8888999999999998765422 234567788899999998664 446665321 1110000
Q ss_pred CC--C-CCccccchhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCC-
Q 014426 246 NP--N-FQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSG- 321 (425)
Q Consensus 246 np--~-~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~~- 321 (425)
.+ . ...|. ....+||+.++.|- |...+++. ..-...+.+..+. +..|++++|||+....+.
T Consensus 191 ~~~a~Yl~Cg~------~~~~iDf~g~N~Y~--WCg~Stf~------~SGy~~l~~~f~~-y~vPvffSEyGCn~~~pR~ 255 (314)
T PF03198_consen 191 QDLANYLNCGD------DDERIDFFGLNSYE--WCGDSTFE------TSGYDRLTKEFSN-YSVPVFFSEYGCNTVTPRT 255 (314)
T ss_dssp HHHHHHTTBTT-----------S-EEEEE------SS--HH------HHSHHHHHHHHTT--SS-EEEEEE---SSSS--
T ss_pred HHHHHHhcCCC------cccccceeeeccce--ecCCCccc------cccHHHHHHHhhC-CCCCeEEcccCCCCCCCcc
Confidence 00 0 11121 12589999999995 87665432 1112344445555 789999999999766532
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCCcccccccccccCCCCCCCCCceEEe
Q 014426 322 ANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTEGLDSYRDGYEVIF 370 (425)
Q Consensus 322 ~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~~i~~ 370 (425)
+++....|..- .. ..+.|.+...|..+. .+|+++-
T Consensus 256 f~ev~aly~~~--------Mt-~v~SGGivYEy~~e~-----n~yGlV~ 290 (314)
T PF03198_consen 256 FTEVPALYSPE--------MT-DVWSGGIVYEYFQEA-----NNYGLVE 290 (314)
T ss_dssp -THHHHHTSHH--------HH-TTEEEEEES-SB--S-----SS--SEE
T ss_pred chHhHHhhCcc--------ch-hheeceEEEEEeccC-----CceEEEE
Confidence 22222222211 11 358899999988662 2466664
No 21
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4e-14 Score=152.25 Aligned_cols=155 Identities=16% Similarity=0.233 Sum_probs=120.6
Q ss_pred CCCCc--EEEeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCC
Q 014426 19 ADDGF--ITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSY 96 (425)
Q Consensus 19 ~~~~f--v~v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~ 96 (425)
...|| |++..+.|.+||||++++|+|.|.....-......+.++++|+.||++|+|+||++.+.+
T Consensus 279 ~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~------------- 345 (808)
T COG3250 279 LRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPN------------- 345 (808)
T ss_pred eeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCC-------------
Confidence 35687 777888999999999999999765443222223446699999999999999999985432
Q ss_pred ChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccc
Q 014426 97 NEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTV 176 (425)
Q Consensus 97 ~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~ 176 (425)
+ +.++++|.++||+||-+...-+.. +..+++..+....-+++|++|
T Consensus 346 ~-------~~~ydLcDelGllV~~Ea~~~~~~-----------------------~~~~~~~~k~~~~~i~~mver---- 391 (808)
T COG3250 346 S-------EEFYDLCDELGLLVIDEAMIETHG-----------------------MPDDPEWRKEVSEEVRRMVER---- 391 (808)
T ss_pred C-------HHHHHHHHHhCcEEEEecchhhcC-----------------------CCCCcchhHHHHHHHHHHHHh----
Confidence 2 367899999999999887533211 114677888889999999999
Q ss_pred cccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCC
Q 014426 177 TGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEG 233 (425)
Q Consensus 177 tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g 233 (425)
.||||+|+.|.+.||...... ...+...+|+.||.++|..+...
T Consensus 392 ----~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 392 ----DRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQYEGRG 435 (808)
T ss_pred ----ccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceeccCcc
Confidence 999999999999999987532 24556788999999999887654
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.54 E-value=2.9e-13 Score=132.15 Aligned_cols=239 Identities=20% Similarity=0.258 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc--cCccCCCChhhhhhh
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV--NNYDQFGGKKQYVNW 138 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~--~~w~~~gG~~~y~~W 138 (425)
..+.|+.||+.|+|.||+=++.+... .|..+ ++..-++...|+++||+|+|+|| +.|.+.|-......|
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~------~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW 96 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYD------GGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAW 96 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TT------TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTC
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcc------cccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccC
Confidence 35779999999999999965544211 24333 56677888899999999999998 445543321111122
Q ss_pred hhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeccCCCCCCC------CChHHHHHHH
Q 014426 139 ARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE-PTIMAWELMNEPRCYAD------PSGKTIQAWI 211 (425)
Q Consensus 139 ~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~~------~~~~~~~~w~ 211 (425)
.. .+-.++.++..+|.+.+++. +++. -.+-.++++||.+.... ..-+.+...+
T Consensus 97 ~~------------~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll 156 (332)
T PF07745_consen 97 AN------------LSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLL 156 (332)
T ss_dssp TS------------SSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHH
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHH
Confidence 21 12366777888888888887 6554 22334799999876431 1235778888
Q ss_pred HHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHH
Q 014426 212 TEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNN 291 (425)
Q Consensus 212 ~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~ 291 (425)
+..+++||+.+|+..|.+..+.-. . +..+..-.+.+.. ..-..|++.+++||. |... ++.+
T Consensus 157 ~ag~~AVr~~~p~~kV~lH~~~~~---~------~~~~~~~f~~l~~-~g~d~DviGlSyYP~-w~~~------l~~l-- 217 (332)
T PF07745_consen 157 NAGIKAVREVDPNIKVMLHLANGG---D------NDLYRWFFDNLKA-AGVDFDVIGLSYYPF-WHGT------LEDL-- 217 (332)
T ss_dssp HHHHHHHHTHSSTSEEEEEES-TT---S------HHHHHHHHHHHHH-TTGG-SEEEEEE-ST-TST-------HHHH--
T ss_pred HHHHHHHHhcCCCCcEEEEECCCC---c------hHHHHHHHHHHHh-cCCCcceEEEecCCC-Ccch------HHHH--
Confidence 999999999999999998653210 0 0000000011111 124578999999996 5431 1222
Q ss_pred HHHHHHHH-HHhcCCCcEEEEeccCCCCC----------------CCch----hhhHHHHHHHHHHHHHhhcCCCccccc
Q 014426 292 WLYNHIQD-AQDTLRKPILLAEFGKSLKT----------------SGAN----QRDQLFDTVYSAIYLSARSGGAAVGGM 350 (425)
Q Consensus 292 ~i~~~~~~-a~~~~~kPv~i~EfG~~~~~----------------~~~~----~r~~~~~~~~~~~~~~~~~~~~~~G~~ 350 (425)
...+.. +.+ ++|||+|.|.|.+... .+++ .+.++++.+++.+.+ .. ++.+.|.+
T Consensus 218 --~~~l~~l~~r-y~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p-~~~g~Gvf 292 (332)
T PF07745_consen 218 --KNNLNDLASR-YGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VP-NGGGLGVF 292 (332)
T ss_dssp --HHHHHHHHHH-HT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S---TTEEEEE
T ss_pred --HHHHHHHHHH-hCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hc-cCCeEEEE
Confidence 222223 333 7999999999987651 0111 466777777776532 11 24688999
Q ss_pred cc
Q 014426 351 FW 352 (425)
Q Consensus 351 ~W 352 (425)
||
T Consensus 293 YW 294 (332)
T PF07745_consen 293 YW 294 (332)
T ss_dssp EE
T ss_pred ee
Confidence 99
No 23
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.48 E-value=7.3e-13 Score=128.33 Aligned_cols=167 Identities=22% Similarity=0.362 Sum_probs=100.4
Q ss_pred CCeEEE-CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCC-C--------CCCC-cCC---
Q 014426 28 GVHLML-NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGG-D--------SPLQ-YSP--- 93 (425)
Q Consensus 28 g~~f~~-~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~-~--------~~~q-~~~--- 93 (425)
+.+|+. ||+||++.|... |..... .++++++..|+..++.|+|+||+-++.... . .++. ..+
T Consensus 2 ~r~f~~~dG~Pff~lgdT~-W~~~~~---~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTA-WSLFHR---LTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE--TTHHHH-----HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHHH-HHHhhC---CCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 456775 999999999775 443321 235788999999999999999997654311 0 1111 111
Q ss_pred --CCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh--hhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 014426 94 --GSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY--VNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTV 169 (425)
Q Consensus 94 --g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y--~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l 169 (425)
..+|++.|+.+|++|+.|.++||.+.|.+. |.. .| ..|... ...+ ..+..+.|++.|
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--wg~-----~~~~~~Wg~~--------~~~m----~~e~~~~Y~~yv 138 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--WGC-----PYVPGTWGFG--------PNIM----PPENAERYGRYV 138 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS---HH-----HHH---------------TTSS-----HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--ECC-----cccccccccc--------ccCC----CHHHHHHHHHHH
Confidence 237899999999999999999999987664 311 12 123210 0111 245567899999
Q ss_pred HhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCC
Q 014426 170 LTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGL 231 (425)
Q Consensus 170 ~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 231 (425)
++| |+..|+|+ |.|.||- ... ....+..++|++.||+.||.+|+|+-.
T Consensus 139 ~~R--------y~~~~Nvi-W~l~gd~-~~~----~~~~~~w~~~~~~i~~~dp~~L~T~H~ 186 (289)
T PF13204_consen 139 VAR--------YGAYPNVI-WILGGDY-FDT----EKTRADWDAMARGIKENDPYQLITIHP 186 (289)
T ss_dssp HHH--------HTT-SSEE-EEEESSS---T----TSSHHHHHHHHHHHHHH--SS-EEEEE
T ss_pred HHH--------HhcCCCCE-EEecCcc-CCC----CcCHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 999 99999998 9999999 211 123455589999999999988999854
No 24
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.44 E-value=5.7e-12 Score=120.12 Aligned_cols=216 Identities=21% Similarity=0.285 Sum_probs=139.5
Q ss_pred CCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHH
Q 014426 86 DSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNH 165 (425)
Q Consensus 86 ~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~ 165 (425)
|..+++.+|.|| ++.+|++++.|+++||++.--.. .|.. +.|.|.... ..++..+.+.+|
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l-~W~~-----~~P~W~~~~-----------~~~~~~~~~~~~ 62 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTL-VWHS-----QTPDWVFNL-----------SKETLLARLENH 62 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEE-eecc-----cCCHhhhcC-----------CHHHHHHHHHHH
Confidence 557889999998 78889999999999999843211 2432 346776421 145778999999
Q ss_pred HHHHHhccccccccccCCCCcEEEEEeccCCCCCCCC-----ChHHH--HHHHHHHHHHhhccCCCceEEeCCCCccCCC
Q 014426 166 IKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADP-----SGKTI--QAWITEMASYVKSIDGNHLLEAGLEGFYGPS 238 (425)
Q Consensus 166 ~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~-----~~~~~--~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~ 238 (425)
++.+++| |++. |..|++.|||...... .-... ..|+....+.+|+.||+..+.+.. |+..
T Consensus 63 i~~v~~r--------y~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd---y~~~ 129 (254)
T smart00633 63 IKTVVGR--------YKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND---YNTE 129 (254)
T ss_pred HHHHHHH--------hCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec---cCCc
Confidence 9999999 9875 8889999999875310 00001 268888999999999998888753 2221
Q ss_pred CCccccCCCCCCccccchhhc--CCCCCcEEEE--ecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEecc
Q 014426 239 SSEKQQYNPNFQVGTDFIANN--QIPGIDFATL--HSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFG 314 (425)
Q Consensus 239 ~~~~~~~np~~~~g~df~~~~--~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG 314 (425)
.+... . ....+++..+ ..-.||.+.+ |.+... .+ . ..+.+.+....+ +++||.|+|++
T Consensus 130 ~~~~k--~---~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~----~~----~----~~~~~~l~~~~~-~g~pi~iTE~d 191 (254)
T smart00633 130 EPNAK--R---QAIYELVKKLKAKGVPIDGIGLQSHLSLGS----PN----I----AEIRAALDRFAS-LGLEIQITELD 191 (254)
T ss_pred CccHH--H---HHHHHHHHHHHHCCCccceeeeeeeecCCC----CC----H----HHHHHHHHHHHH-cCCceEEEEee
Confidence 11000 0 0001222211 1123776665 554321 11 1 124444555554 79999999999
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 014426 315 KSLKTSGANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE 357 (425)
Q Consensus 315 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 357 (425)
+...... ..+.++++.+++.+++. ..+.|.++|.+.+.
T Consensus 192 v~~~~~~-~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~ 229 (254)
T smart00633 192 ISGYPNP-QAQAADYEEVFKACLAH----PAVTGVTVWGVTDK 229 (254)
T ss_pred cCCCCcH-HHHHHHHHHHHHHHHcC----CCeeEEEEeCCccC
Confidence 9875321 35667888888876653 46789999998875
No 25
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.8e-12 Score=130.26 Aligned_cols=115 Identities=23% Similarity=0.249 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCCCCc----CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 60 KVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY----SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~----~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
..++++..++++|+|+||+++... .+++ .|.......+..||++|++|+++||+|+|++|... |+...
T Consensus 74 ~~~~~~~~ik~~G~n~VRiPi~~~----~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~---~~~~~- 145 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIPIGYW----ALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYP---GGNNG- 145 (407)
T ss_pred hhhhHHHHHHHcCCcEEEcccchh----hhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccC---CCCCC-
Confidence 348999999999999999977533 1232 34444356667999999999999999999999752 22110
Q ss_pred hhhhhhcCCCCCCCCCCCCC-HHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCC
Q 014426 136 VNWARGQGQSISSDDDFFTN-SVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRC 198 (425)
Q Consensus 136 ~~W~~~~g~~~~~~~~fy~~-~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~ 198 (425)
.........|.. ....+++.+.|++++.| |++.++|+++++.|||+.
T Consensus 146 --------~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 --------HEHSGYTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred --------cCcccccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 001111223443 56678999999999999 999999999999999996
No 26
>PLN03059 beta-galactosidase; Provisional
Probab=99.40 E-value=2.2e-11 Score=129.98 Aligned_cols=174 Identities=19% Similarity=0.240 Sum_probs=130.9
Q ss_pred cEEEeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhH
Q 014426 23 FITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQ 102 (425)
Q Consensus 23 fv~v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~ 102 (425)
-|+.++..|++||+|+++..-.+|+.... ++.+++.|+.||++|+|+|=++++++ -.||.||.||-+...
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R~~------p~~W~d~L~k~Ka~GlNtV~tYV~Wn----~HEp~~G~~dF~G~~ 98 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPRST------PEMWPDLIQKAKDGGLDVIQTYVFWN----GHEPSPGNYYFEDRY 98 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCcCC------HHHHHHHHHHHHHcCCCeEEEEeccc----ccCCCCCeeeccchH
Confidence 48999999999999999999998876531 48999999999999999999998855 568889999998999
Q ss_pred HHHHHHHHHHHcCCEEEEecccC----ccCCCChhhhhhhhhh-cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Q 014426 103 GLDFVISEARKYGIKLVLSMVNN----YDQFGGKKQYVNWARG-QGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177 (425)
Q Consensus 103 ~lD~~i~~A~~~Gi~vil~l~~~----w~~~gG~~~y~~W~~~-~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~t 177 (425)
.|.++|+.|++.||+||+-+--+ | ++||. |.|... ++..+ --+||...++.++|+++|+.++-+ .
T Consensus 99 DL~~Fl~la~e~GLyvilRpGPYIcAEw-~~GGl---P~WL~~~~~i~~-----Rs~d~~fl~~v~~~~~~l~~~l~~-~ 168 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLRIGPYICAEW-NFGGF---PVWLKYVPGIEF-----RTDNGPFKAAMQKFTEKIVDMMKS-E 168 (840)
T ss_pred HHHHHHHHHHHcCCEEEecCCcceeeee-cCCCC---chhhhcCCCccc-----ccCCHHHHHHHHHHHHHHHHHHhh-c
Confidence 99999999999999999987532 5 46775 678753 22111 123788888888888888887310 0
Q ss_pred ccccCCCCcEEEEEeccCCCCCCC---CChHHHHHHHHHHHH
Q 014426 178 GVAYKDEPTIMAWELMNEPRCYAD---PSGKTIQAWITEMAS 216 (425)
Q Consensus 178 g~~y~~~p~I~~weL~NEP~~~~~---~~~~~~~~w~~~~~~ 216 (425)
+..+++--.|++.++-||-..... .....+.+|+++|+.
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~ 210 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAV 210 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHH
Confidence 112445545888999999765421 124567777776654
No 27
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.39 E-value=1.8e-11 Score=120.17 Aligned_cols=168 Identities=14% Similarity=0.232 Sum_probs=109.3
Q ss_pred eEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHH
Q 014426 30 HLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVIS 109 (425)
Q Consensus 30 ~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~ 109 (425)
+|++||||+++.+--+|+.... ++.+++.|+.||++|+|+|-++++++ -.|+.+|+||-+....|+.+|+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p------~~~W~~~l~k~ka~G~n~v~~yv~W~----~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIP------PEYWRDRLQKMKAAGLNTVSTYVPWN----LHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE--HH----HHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccCC------hhHHHHHHHHHHhCCcceEEEecccc----ccCCCCCcccccchhhHHHHHH
Confidence 4889999999999988776542 37999999999999999999988755 4678899999888889999999
Q ss_pred HHHHcCCEEEEeccc----CccCCCChhhhhhhhhhc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC
Q 014426 110 EARKYGIKLVLSMVN----NYDQFGGKKQYVNWARGQ-GQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE 184 (425)
Q Consensus 110 ~A~~~Gi~vil~l~~----~w~~~gG~~~y~~W~~~~-g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~ 184 (425)
.|+++||+||+-+-- -| .+|| +|.|.... +..+ --.|+...++.+++++.|+..+-+ ..+++.
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~-~~gG---~P~Wl~~~~~~~~-----R~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G 138 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEW-DNGG---LPAWLLRKPDIRL-----RTNDPPFLEAVERWYRALAKIIKP---LQYTNG 138 (319)
T ss_dssp HHHHTT-EEEEEEES---TTB-GGGG-----GGGGGSTTS-S-----SSS-HHHHHHHHHHHHHHHHHHGG---GBGGGT
T ss_pred HHHHcCcEEEecccceecccc-cchh---hhhhhhccccccc-----cccchhHHHHHHHHHHHHHHHHHh---hhhcCC
Confidence 999999999998642 23 2455 47787643 1111 123677777777777777766433 235555
Q ss_pred CcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCC
Q 014426 185 PTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGN 224 (425)
Q Consensus 185 p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 224 (425)
-.|++.++-||...... -.+..+.+.+..++.-..
T Consensus 139 GpII~vQvENEyg~~~~-----~~~Y~~~l~~~~~~~g~~ 173 (319)
T PF01301_consen 139 GPIIMVQVENEYGSYGT-----DRAYMEALKDAYRDWGID 173 (319)
T ss_dssp SSEEEEEESSSGGCTSS------HHHHHHHHHHHHHTT-S
T ss_pred CceehhhhhhhhCCCcc-----cHhHHHHHHHHHHHhhCc
Confidence 56889999999983321 234444555555554443
No 28
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3e-11 Score=122.07 Aligned_cols=283 Identities=17% Similarity=0.249 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC-C--CCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS-P--GSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQ 134 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~-~--g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~ 134 (425)
...+.+|++.|+++|++..|+-+. |.++-|. + +..|+++++.+..+|++..++||.++++|++ |+.
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRFSIs----WSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDl------ 158 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRFSIS----WSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDL------ 158 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEEEee----hHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCC------
Confidence 467899999999999999998442 4455442 2 4589999999999999999999999999985 532
Q ss_pred hhhhhhh-cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC------------
Q 014426 135 YVNWARG-QGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD------------ 201 (425)
Q Consensus 135 y~~W~~~-~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~------------ 201 (425)
|.+... -| =|-++++++.|++|.+-+.++ |+|+ |-.|..+|||+....
T Consensus 159 -Pq~LeDeYg--------GwLn~~ivedF~~yA~~CF~~--------fGDr--VK~WiT~NEP~v~s~~gY~~G~~aPGr 219 (524)
T KOG0626|consen 159 -PQALEDEYG--------GWLNPEIVEDFRDYADLCFQE--------FGDR--VKHWITFNEPNVFSIGGYDTGTKAPGR 219 (524)
T ss_pred -CHHHHHHhc--------cccCHHHHHHHHHHHHHHHHH--------hccc--ceeeEEecccceeeeehhccCCCCCCC
Confidence 344332 12 167899999999999999999 9996 888999999994320
Q ss_pred -----------CCh-HHHH---HH---HHHHHHHhhcc-C--CCceEEeCCC-CccCCCCCc--c-------------c-
Q 014426 202 -----------PSG-KTIQ---AW---ITEMASYVKSI-D--GNHLLEAGLE-GFYGPSSSE--K-------------Q- 243 (425)
Q Consensus 202 -----------~~~-~~~~---~w---~~~~~~~Ir~~-d--p~~lV~~G~~-g~~~~~~~~--~-------------~- 243 (425)
.++ +.+. +. ..++.+..|+. . .+-.|.+... .|+.+.++. + +
T Consensus 220 Cs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~ 299 (524)
T KOG0626|consen 220 CSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWF 299 (524)
T ss_pred CCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhh
Confidence 011 1111 11 12233333322 1 1224443321 232222110 0 0
Q ss_pred ------cCCCCC---Cccc---cch---hhcCCCCCcEEEEecCCCCCCCCC---C------------------------
Q 014426 244 ------QYNPNF---QVGT---DFI---ANNQIPGIDFATLHSYPDQWLPSS---S------------------------ 281 (425)
Q Consensus 244 ------~~np~~---~~g~---df~---~~~~~~~iD~~s~H~Y~~~w~~~~---~------------------------ 281 (425)
+..|.- ..|. .|. ........||+.++.|-....... .
T Consensus 300 l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 379 (524)
T KOG0626|consen 300 LEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLIG 379 (524)
T ss_pred hcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeeccccccc
Confidence 001100 0000 000 011134569999998843211100 0
Q ss_pred ---chhhhHHHHHHHHHHHHHHHh-cCCCcEEEEeccCCCCCCC---------chhhhHHHHHHHHHHHHHhh-cCCCcc
Q 014426 282 ---DESQTSFLNNWLYNHIQDAQD-TLRKPILLAEFGKSLKTSG---------ANQRDQLFDTVYSAIYLSAR-SGGAAV 347 (425)
Q Consensus 282 ---~~~~~~~~~~~i~~~~~~a~~-~~~kPv~i~EfG~~~~~~~---------~~~r~~~~~~~~~~~~~~~~-~~~~~~ 347 (425)
....+.....-++..+...+. ..+.|++|+|.|......+ ...|.+|++..+..+.++++ .+..+.
T Consensus 380 ~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~ 459 (524)
T KOG0626|consen 380 PKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVK 459 (524)
T ss_pred ccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 000011112234444555544 3578899999999886322 12888999999999999886 677889
Q ss_pred cccccccccC--CCCCCCCCceEEe
Q 014426 348 GGMFWQLFTE--GLDSYRDGYEVIF 370 (425)
Q Consensus 348 G~~~W~~~~~--g~~~~~dg~~i~~ 370 (425)
|+++|++.|+ ..+.|.-.|++++
T Consensus 460 GYf~WSLmDnfEw~~Gy~~RFGlyy 484 (524)
T KOG0626|consen 460 GYFVWSLLDNFEWLDGYKVRFGLYY 484 (524)
T ss_pred eEEEeEcccchhhhcCcccccccEE
Confidence 9999999996 2222333556555
No 29
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.36 E-value=9.3e-13 Score=104.66 Aligned_cols=75 Identities=28% Similarity=0.645 Sum_probs=47.6
Q ss_pred cCCCCcEEEEEeccC-CCCCC--------CCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCc
Q 014426 181 YKDEPTIMAWELMNE-PRCYA--------DPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQV 251 (425)
Q Consensus 181 y~~~p~I~~weL~NE-P~~~~--------~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~ 251 (425)
|+++|+|++|+|+|| |.... ....+.+..|+++++++||++||+++||+|..+. ..
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~~------------ 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---DW------------ 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S----T------------
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---CH------------
Confidence 999999999999999 66221 1124678999999999999999999999886432 00
Q ss_pred cccchhhcCCCCCcEEEEecC
Q 014426 252 GTDFIANNQIPGIDFATLHSY 272 (425)
Q Consensus 252 g~df~~~~~~~~iD~~s~H~Y 272 (425)
..+ .....+.+||++||.|
T Consensus 70 -~~~-~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 -EDL-EQLQAENLDVISFHPY 88 (88)
T ss_dssp -THH-HHS--TT-SSEEB-EE
T ss_pred -HHH-HHhchhcCCEEeeecC
Confidence 012 2223588999999998
No 30
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=6e-10 Score=104.09 Aligned_cols=247 Identities=18% Similarity=0.210 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc--cCccCCCChhhhhh
Q 014426 60 KVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV--NNYDQFGGKKQYVN 137 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~--~~w~~~gG~~~y~~ 137 (425)
...+.|+.||.+|+|.||+-++.+.....-+.--|-.+ -++..-++-..|...||+|++++| ++|.+.+-......
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPka 141 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKA 141 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHH
Confidence 44567999999999999996554421100010011222 255566777888999999999998 55665332111123
Q ss_pred hhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeccCCCCCCC-CCh-----HHHHHH
Q 014426 138 WARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE-PTIMAWELMNEPRCYAD-PSG-----KTIQAW 210 (425)
Q Consensus 138 W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~~-~~~-----~~~~~w 210 (425)
|... . -+..+++...|.+.+++. .++. -.+-+.++.||-+...- |+| +.+.+.
T Consensus 142 W~~l---------~---fe~lk~avy~yTk~~l~~--------m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L 201 (403)
T COG3867 142 WENL---------N---FEQLKKAVYSYTKYVLTT--------MKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAAL 201 (403)
T ss_pred hhhc---------C---HHHHHHHHHHHHHHHHHH--------HHHcCCCccceEeccccCCceeccCCCCcChHHHHHH
Confidence 3321 1 144556666666776666 5544 12334699999987532 222 356667
Q ss_pred HHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCC-CCccccchhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHH
Q 014426 211 ITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPN-FQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFL 289 (425)
Q Consensus 211 ~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~-~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~ 289 (425)
+++-+.+||+.+|+.+|.+.... + .|++ +.+-.|-+. ...-..|++..-+||. |... ++.
T Consensus 202 ~n~g~~avrev~p~ikv~lHla~------g----~~n~~y~~~fd~lt-k~nvdfDVig~SyYpy-Whgt------l~n- 262 (403)
T COG3867 202 LNAGIRAVREVSPTIKVALHLAE------G----ENNSLYRWIFDELT-KRNVDFDVIGSSYYPY-WHGT------LNN- 262 (403)
T ss_pred HHHHhhhhhhcCCCceEEEEecC------C----CCCchhhHHHHHHH-HcCCCceEEeeecccc-ccCc------HHH-
Confidence 78889999999999999875321 0 1222 111111111 1123467899999997 5432 111
Q ss_pred HHHHHHHH-HHHHhcCCCcEEEEeccCC---CCC-------------CCch----hhhHHHHHHHHHHHHHhhcCCCccc
Q 014426 290 NNWLYNHI-QDAQDTLRKPILLAEFGKS---LKT-------------SGAN----QRDQLFDTVYSAIYLSARSGGAAVG 348 (425)
Q Consensus 290 ~~~i~~~~-~~a~~~~~kPv~i~EfG~~---~~~-------------~~~~----~r~~~~~~~~~~~~~~~~~~~~~~G 348 (425)
|...+ ..|.+ ++|-|+|.|.+.. .+. .++. .+..+.+++++.+.+--+ +...|
T Consensus 263 ---L~~nl~dia~r-Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~--~~GlG 336 (403)
T COG3867 263 ---LTTNLNDIASR-YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPK--SNGLG 336 (403)
T ss_pred ---HHhHHHHHHHH-hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCC--CCceE
Confidence 12222 23444 8999999999872 221 1122 566788888877654321 23678
Q ss_pred ccccc
Q 014426 349 GMFWQ 353 (425)
Q Consensus 349 ~~~W~ 353 (425)
.+||.
T Consensus 337 vFYWE 341 (403)
T COG3867 337 VFYWE 341 (403)
T ss_pred EEEec
Confidence 89986
No 31
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.10 E-value=1.1e-09 Score=114.02 Aligned_cols=283 Identities=14% Similarity=0.133 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHH-HcCCCEEEEcc-ccCCCCCCCC-cCCC--CCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCCh
Q 014426 58 KDKVSSVFQQAK-EHGLSMARTWA-FSDGGDSPLQ-YSPG--SYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGK 132 (425)
Q Consensus 58 ~~~~~~~l~~l~-~~G~N~vRi~~-~~~~~~~~~q-~~~g--~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~ 132 (425)
+.++...|..++ ++|+..||+|. |+|+.-...+ ...| .|| |..+|.++|...++||++++.|.-...
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~p~----- 109 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGFMPM----- 109 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-SB-G-----
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEechh-----
Confidence 577888888886 77999999975 5443211111 1122 155 899999999999999999999852211
Q ss_pred hhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeccCCCCCCC---CChHHHH
Q 014426 133 KQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE-PTIMAWELMNEPRCYAD---PSGKTIQ 208 (425)
Q Consensus 133 ~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~~---~~~~~~~ 208 (425)
+........-......+.|.-.+.+.++++++++|...- |+.+ =.-..||++|||+.... .+.+.+.
T Consensus 110 -----~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~R----YG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~ 180 (486)
T PF01229_consen 110 -----ALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDR----YGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYF 180 (486)
T ss_dssp -----GGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHH----HHHHHHTTSEEEESS-TTSTTTSGGG-HHHHH
T ss_pred -----hhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhh----cCCccccceeEEeCcCCCcccccCCCCHHHHH
Confidence 110000000000001122334455555554444441000 5432 11235899999998632 1235688
Q ss_pred HHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCC--chhhh
Q 014426 209 AWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSS--DESQT 286 (425)
Q Consensus 209 ~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~--~~~~~ 286 (425)
+.++..+++||+++|...|. +.++... ...+ .....+|..... -.+||+|+|.|+........ ....+
T Consensus 181 ~ly~~~~~~iK~~~p~~~vG--Gp~~~~~-~~~~------~~~~l~~~~~~~-~~~DfiS~H~y~~~~~~~~~~~~~~~~ 250 (486)
T PF01229_consen 181 ELYDATARAIKAVDPELKVG--GPAFAWA-YDEW------CEDFLEFCKGNN-CPLDFISFHSYGTDSAEDINENMYERI 250 (486)
T ss_dssp HHHHHHHHHHHHH-TTSEEE--EEEEETT--THH------HHHHHHHHHHCT----SEEEEEEE-BESESE-SS-EEEEB
T ss_pred HHHHHHHHHHHHhCCCCccc--Ccccccc-HHHH------HHHHHHHHhcCC-CCCCEEEEEecccccccccchhHHhhh
Confidence 89999999999999998764 2222110 0000 011223333333 45799999999864321111 00111
Q ss_pred HHHHH---HHHHHHHHHHh--cCCCcEEEEeccCCCCCCCc----hhhhHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 014426 287 SFLNN---WLYNHIQDAQD--TLRKPILLAEFGKSLKTSGA----NQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE 357 (425)
Q Consensus 287 ~~~~~---~i~~~~~~a~~--~~~kPv~i~EfG~~~~~~~~----~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 357 (425)
..... -+....+.... ..+.|+.++||..+...... ..+..|+ ...+++... ....+..+|.+.+-
T Consensus 251 ~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i---~k~lL~~~~--~~l~~~sywt~sD~ 325 (486)
T PF01229_consen 251 EDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYI---AKNLLSNDG--AFLDSFSYWTFSDR 325 (486)
T ss_dssp --HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHH---HH-HHHHGG--GT-SEEEES-SBS-
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhH---HHHHHHhhh--hhhhhhhccchhhh
Confidence 11111 12222122222 23678999999986654211 1333332 222333321 12445678999874
Q ss_pred ----C--CCCCCCCceEEeCC
Q 014426 358 ----G--LDSYRDGYEVIFSE 372 (425)
Q Consensus 358 ----g--~~~~~dg~~i~~~~ 372 (425)
+ ..+.-.||++....
T Consensus 326 Fee~~~~~~pf~ggfGLlt~~ 346 (486)
T PF01229_consen 326 FEENGTPRKPFHGGFGLLTKL 346 (486)
T ss_dssp --TTSS-SSSSSS-S-SEECC
T ss_pred hhccCCCCCceecchhhhhcc
Confidence 1 12333577776543
No 32
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.1e-08 Score=107.87 Aligned_cols=174 Identities=16% Similarity=0.250 Sum_probs=119.7
Q ss_pred EeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHH
Q 014426 26 AKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLD 105 (425)
Q Consensus 26 v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD 105 (425)
.++..++++|+++.+.|..++.... .++.+.++|+.||++|+|+||+-.| .|..++|..|.||-+ -+|
T Consensus 3 ~~~~~~~~dg~~~~l~gG~y~p~~~------p~~~w~ddl~~mk~~G~N~V~ig~f---aW~~~eP~eG~fdf~---~~D 70 (673)
T COG1874 3 YDGYSFIRDGRRILLYGGDYYPERW------PRETWMDDLRKMKALGLNTVRIGYF---AWNLHEPEEGKFDFT---WLD 70 (673)
T ss_pred ccccceeeCCceeEEeccccChHHC------CHHHHHHHHHHHHHhCCCeeEeeeE---EeeccCccccccCcc---cch
Confidence 3566788899999999998654432 2479999999999999999999222 245788888999855 455
Q ss_pred HH-HHHHHHcCCEEEEecccCccCCCCh-----hhhhhhhhhcCC-CC----CCCCCCCCCHHHHHHHHHHHHHHHhccc
Q 014426 106 FV-ISEARKYGIKLVLSMVNNYDQFGGK-----KQYVNWARGQGQ-SI----SSDDDFFTNSVVKQYYKNHIKTVLTRIN 174 (425)
Q Consensus 106 ~~-i~~A~~~Gi~vil~l~~~w~~~gG~-----~~y~~W~~~~g~-~~----~~~~~fy~~~~~~~~~~~~~~~l~~R~N 174 (425)
.. ++.|++.||++|+.... .|+. +.||+|...... -. .-+.--++++-.++.....++++++|.
T Consensus 71 ~~~l~~a~~~Gl~vil~t~P----~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~- 145 (673)
T COG1874 71 EIFLERAYKAGLYVILRTGP----TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL- 145 (673)
T ss_pred HHHHHHHHhcCceEEEecCC----CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH-
Confidence 55 99999999999998721 1211 123443322110 00 111223567767777777777888883
Q ss_pred cccccccCCCCcEEEEEeccCCCCCCC---CChHHHHHHHHHHHHHhhccC
Q 014426 175 TVTGVAYKDEPTIMAWELMNEPRCYAD---PSGKTIQAWITEMASYVKSID 222 (425)
Q Consensus 175 ~~tg~~y~~~p~I~~weL~NEP~~~~~---~~~~~~~~w~~~~~~~Ir~~d 222 (425)
|+++|+|++|.+-||-.+..+ .....++.|+++-...|+.++
T Consensus 146 ------~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln 190 (673)
T COG1874 146 ------YGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLN 190 (673)
T ss_pred ------hccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhh
Confidence 999999999999999887321 134566678887666665544
No 33
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.82 E-value=3.4e-08 Score=97.24 Aligned_cols=241 Identities=20% Similarity=0.276 Sum_probs=145.7
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCC
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQ 144 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~ 144 (425)
...+-..-+|.+=. -.+..|..+++.+|.|+ +...|.+++.|+++||++---..- |.. +-|+|.....
T Consensus 27 ~~~~~~~~Fn~~t~--eN~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~Lv-W~~-----~~P~w~~~~~- 94 (320)
T PF00331_consen 27 YRELFAKHFNSVTP--ENEMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTLV-WHS-----QTPDWVFNLA- 94 (320)
T ss_dssp HHHHHHHH-SEEEE--SSTTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEEE-ESS-----SS-HHHHTST-
T ss_pred HHHHHHHhCCeeee--ccccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeEE-Ecc-----cccceeeecc-
Confidence 44444455786643 12233556788889887 788999999999999998733211 322 3477876420
Q ss_pred CCCCCCCCCCCH---HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC-CC---hHHH-----HHHHH
Q 014426 145 SISSDDDFFTNS---VVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD-PS---GKTI-----QAWIT 212 (425)
Q Consensus 145 ~~~~~~~fy~~~---~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~-~~---~~~~-----~~w~~ 212 (425)
-++.. ..++..+++++.+++| |++...|.+|++.|||-.... +. ...+ ..++.
T Consensus 95 -------~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~ 159 (320)
T PF00331_consen 95 -------NGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIA 159 (320)
T ss_dssp -------TSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHH
T ss_pred -------CCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHHH
Confidence 12222 3889999999999999 998778999999999987642 00 0111 24778
Q ss_pred HHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhc--CCCCCcEE--EEecCCCCCCCCCCchhhhHH
Q 014426 213 EMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANN--QIPGIDFA--TLHSYPDQWLPSSSDESQTSF 288 (425)
Q Consensus 213 ~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~--~~~~iD~~--s~H~Y~~~w~~~~~~~~~~~~ 288 (425)
.+.+..|+.||+....+.. |+...+.. . ..-...+..+ ..-.||-+ +.|+-....
T Consensus 160 ~aF~~A~~~~P~a~L~~ND---y~~~~~~k----~--~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~------------ 218 (320)
T PF00331_consen 160 DAFRAAREADPNAKLFYND---YNIESPAK----R--DAYLNLVKDLKARGVPIDGIGLQSHFDAGYP------------ 218 (320)
T ss_dssp HHHHHHHHHHTTSEEEEEE---SSTTSTHH----H--HHHHHHHHHHHHTTHCS-EEEEEEEEETTSS------------
T ss_pred HHHHHHHHhCCCcEEEecc---ccccchHH----H--HHHHHHHHHHHhCCCccceechhhccCCCCC------------
Confidence 8899999999998877754 22222100 0 0000111111 11227755 557655431
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCc-----hhhhHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 014426 289 LNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGA-----NQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE 357 (425)
Q Consensus 289 ~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~~~-----~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 357 (425)
.+.+.+.++.... ++.||.|+|+.+....... ..+.++++.+++.+++.-. ..+.|.++|.+.+.
T Consensus 219 -~~~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~--~~v~git~Wg~~D~ 288 (320)
T PF00331_consen 219 -PEQIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPP--AAVEGITWWGFTDG 288 (320)
T ss_dssp -HHHHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTH--CTEEEEEESSSBTT
T ss_pred -HHHHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCc--cCCCEEEEECCCCC
Confidence 1224445555554 8999999999998775421 1556777777776655311 15889999999986
No 34
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=8.1e-08 Score=99.24 Aligned_cols=154 Identities=20% Similarity=0.242 Sum_probs=119.2
Q ss_pred cEEEeCCeEEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhH
Q 014426 23 FITAKGVHLMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQ 102 (425)
Q Consensus 23 fv~v~g~~f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~ 102 (425)
-|+.+...|.+||+++.+....+|++... ++.+++.++.+++.|+|+|-+++++++ .+|.||.|+-+..-
T Consensus 19 ~v~yd~~~~~idG~r~~~isGsIHY~R~~------pe~W~~~i~k~k~~Gln~IqtYVfWn~----Hep~~g~y~FsG~~ 88 (649)
T KOG0496|consen 19 NVTYDKRSLLIDGQRFILISGSIHYPRST------PEMWPDLIKKAKAGGLNVIQTYVFWNL----HEPSPGKYDFSGRY 88 (649)
T ss_pred EEeccccceeecCCeeEEEEeccccccCC------hhhhHHHHHHHHhcCCceeeeeeeccc----ccCCCCcccccchh
Confidence 47778889999999999999998887642 479999999999999999999998763 68889999877777
Q ss_pred HHHHHHHHHHHcCCEEEEecccC----ccCCCChhhhhhhhhhcCCCCCCCCCCC-CCHHHHHHHHHHHHHHHhcccccc
Q 014426 103 GLDFVISEARKYGIKLVLSMVNN----YDQFGGKKQYVNWARGQGQSISSDDDFF-TNSVVKQYYKNHIKTVLTRINTVT 177 (425)
Q Consensus 103 ~lD~~i~~A~~~Gi~vil~l~~~----w~~~gG~~~y~~W~~~~g~~~~~~~~fy-~~~~~~~~~~~~~~~l~~R~N~~t 177 (425)
.|-++|.+|++.|++|+|-+--+ | .+||.+ -|.+... ...|= +|+..+.+.+++++.|+.+.+
T Consensus 89 DlvkFikl~~~~GLyv~LRiGPyIcaEw-~~GG~P---~wL~~~p-----g~~~Rt~nepfk~~~~~~~~~iv~~mk--- 156 (649)
T KOG0496|consen 89 DLVKFIKLIHKAGLYVILRIGPYICAEW-NFGGLP---WWLRNVP-----GIVFRTDNEPFKAEMERWTTKIVPMMK--- 156 (649)
T ss_pred HHHHHHHHHHHCCeEEEecCCCeEEecc-cCCCcc---hhhhhCC-----ceEEecCChHHHHHHHHHHHHHHHHHH---
Confidence 77788999999999999987532 5 467764 4544311 11222 368889999999999998765
Q ss_pred ccccCCCCcEEEEEeccCCCC
Q 014426 178 GVAYKDEPTIMAWELMNEPRC 198 (425)
Q Consensus 178 g~~y~~~p~I~~weL~NEP~~ 198 (425)
..-+++---|++-++-||-..
T Consensus 157 ~L~~~qGGPIIl~QIENEYG~ 177 (649)
T KOG0496|consen 157 KLFASQGGPIILVQIENEYGN 177 (649)
T ss_pred HHHhhcCCCEEEEEeechhhH
Confidence 223555544777999999873
No 35
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=5.6e-07 Score=90.88 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=86.5
Q ss_pred EEECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHH
Q 014426 31 LMLNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISE 110 (425)
Q Consensus 31 f~~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~ 110 (425)
|.+||.|+++.|.|-+-...+- +-.+-+.++-.|+..++.|+|++|+|.- |.|.. |++...
T Consensus 330 fkin~~pvflkg~nwip~s~f~-dr~t~~~~~~LL~Sv~e~~MN~lRVWGG------------GvYEs------d~FY~l 390 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFR-DRENIAKTEFLLDSVAEVGMNMLRVWGG------------GVYES------DYFYQL 390 (867)
T ss_pred EEEcCcEEEeecCCccChHHHH-hhHHHHHHHHHHHHHHHhCcceEEEecC------------ccccc------hhHHHH
Confidence 4569999999999932221111 2223467778899999999999999862 23433 678899
Q ss_pred HHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEE
Q 014426 111 ARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAW 190 (425)
Q Consensus 111 A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~w 190 (425)
|.+.||.|.-++.-. + ..+.++.+..+..+.-++.=+.| .+.||+|+.|
T Consensus 391 ad~lGilVWQD~MFA--------------C---------AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviIf 439 (867)
T KOG2230|consen 391 ADSLGILVWQDMMFA--------------C---------ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVIIF 439 (867)
T ss_pred hhhccceehhhhHHH--------------h---------hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEEE
Confidence 999999985554211 1 12345677777778888888999 9999999999
Q ss_pred EeccCCCCC
Q 014426 191 ELMNEPRCY 199 (425)
Q Consensus 191 eL~NEP~~~ 199 (425)
.--||-...
T Consensus 440 sgNNENEaA 448 (867)
T KOG2230|consen 440 SGNNENEAA 448 (867)
T ss_pred eCCCccHHH
Confidence 999998753
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.36 E-value=1.4e-05 Score=71.01 Aligned_cols=141 Identities=18% Similarity=0.297 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHHHHcCCCEEEE-ccccCC-CCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChh
Q 014426 56 YLKDKVSSVFQQAKEHGLSMART-WAFSDG-GDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKK 133 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi-~~~~~~-~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~ 133 (425)
.+.++++++|+.|+++|+++|=+ |.-..+ ..-+-+-.++.+....-+.|+.++++|+++||+|++-|....
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~------- 89 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP------- 89 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc-------
Confidence 34689999999999999999844 221111 000111123334444567899999999999999999986321
Q ss_pred hhhhhhhhcCCCCCCCCCCCCCHH-HHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHH
Q 014426 134 QYVNWARGQGQSISSDDDFFTNSV-VKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWIT 212 (425)
Q Consensus 134 ~y~~W~~~~g~~~~~~~~fy~~~~-~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~ 212 (425)
.|-.. .+.+ ..+.-+..++++.++ |++||++-+|=|-.|+..... ...+..+
T Consensus 90 ---~~w~~------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~~~~ 142 (166)
T PF14488_consen 90 ---DYWDQ------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPERFA 142 (166)
T ss_pred ---hhhhc------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHHHHH
Confidence 11110 1222 222234567788888 999999999999999998642 2355668
Q ss_pred HHHHHhhccCCCceEEeC
Q 014426 213 EMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 213 ~~~~~Ir~~dp~~lV~~G 230 (425)
.+.+++|++.|+.+|.+.
T Consensus 143 ~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 143 LLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHhCCCCCeEEe
Confidence 888899999998888875
No 37
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=2e-05 Score=75.38 Aligned_cols=218 Identities=21% Similarity=0.268 Sum_probs=126.7
Q ss_pred CCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHH
Q 014426 84 GGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYK 163 (425)
Q Consensus 84 ~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~ 163 (425)
-.|..+++++|.|+ |+.-|.+++-|++|||.+----. .|.. |.|.|.... + .+.+...+.++
T Consensus 67 mKwe~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhGHtL-vW~~-----q~P~W~~~~--------e-~~~~~~~~~~e 128 (345)
T COG3693 67 MKWEAIEPERGRFN---FEAADAIANFARKHNMPLHGHTL-VWHS-----QVPDWLFGD--------E-LSKEALAKMVE 128 (345)
T ss_pred cccccccCCCCccC---ccchHHHHHHHHHcCCeecccee-eecc-----cCCchhhcc--------c-cChHHHHHHHH
Confidence 34778889999887 77789999999999998642110 1321 456665321 1 33478899999
Q ss_pred HHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCC-------ChHHHHHHHHHHHHHhhccCCCceEEeCCCCccC
Q 014426 164 NHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADP-------SGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYG 236 (425)
Q Consensus 164 ~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~-------~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~ 236 (425)
+++..++.| |++. |.+|++.|||-..... .+-.-.+|++......|+.||+....+.. |+
T Consensus 129 ~hI~tV~~r--------Ykg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ND---Y~ 195 (345)
T COG3693 129 EHIKTVVGR--------YKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIND---YS 195 (345)
T ss_pred HHHHHHHHh--------ccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeec---cc
Confidence 999999999 9997 8889999999874220 00122356667778889999987666543 22
Q ss_pred CCCCccccCCCCCCccccchh------hcCCCCCcEE--EEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcE
Q 014426 237 PSSSEKQQYNPNFQVGTDFIA------NNQIPGIDFA--TLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPI 308 (425)
Q Consensus 237 ~~~~~~~~~np~~~~g~df~~------~~~~~~iD~~--s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv 308 (425)
.. .+|.- .+++. ....-.||-+ +-|+=.+ |. +.+. + .......+ + ++.|+
T Consensus 196 ie------~~~~k---r~~~~nlI~~LkekG~pIDgiG~QsH~~~~-~~---~~~~----~---~~a~~~~~-k-~Gl~i 253 (345)
T COG3693 196 IE------GNPAK---RNYVLNLIEELKEKGAPIDGIGIQSHFSGD-GP---SIEK----M---RAALLKFS-K-LGLPI 253 (345)
T ss_pred cc------CChHH---HHHHHHHHHHHHHCCCCccceeeeeeecCC-CC---CHHH----H---HHHHHHHh-h-cCCCc
Confidence 21 13320 01111 1122337754 4463322 21 1111 1 11122223 2 69999
Q ss_pred EEEeccCCCCCCC-chhhhHH-----HHHHHHHHHHHhhcCCCcccccccccccC
Q 014426 309 LLAEFGKSLKTSG-ANQRDQL-----FDTVYSAIYLSARSGGAAVGGMFWQLFTE 357 (425)
Q Consensus 309 ~i~EfG~~~~~~~-~~~r~~~-----~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 357 (425)
+|+|+-+....+. .+.|... +...+..+. .....+.+.++|.+.|.
T Consensus 254 ~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~---~~~~~v~~it~WGi~D~ 305 (345)
T COG3693 254 YVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLL---LNPNQVKAITFWGITDR 305 (345)
T ss_pred eEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHH---hcccccceEEEeeeccC
Confidence 9999998774321 1112111 112222222 22334778899999986
No 38
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=5e-05 Score=70.71 Aligned_cols=198 Identities=18% Similarity=0.215 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVN 137 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~ 137 (425)
-+++..||+.++..+. .||++. .| + .-|..++.+|.+.|+++++-+ |-
T Consensus 62 a~~~~sDLe~l~~~t~-~IR~Y~-sD--------------C---n~le~v~pAa~~~g~kv~lGi---w~---------- 109 (305)
T COG5309 62 ADQVASDLELLASYTH-SIRTYG-SD--------------C---NTLENVLPAAEASGFKVFLGI---WP---------- 109 (305)
T ss_pred HHHHHhHHHHhccCCc-eEEEee-cc--------------c---hhhhhhHHHHHhcCceEEEEE---ee----------
Confidence 4789999999999988 999976 22 1 234577899999999999876 21
Q ss_pred hhhhcCCCCCCCCCCCCCHHHHHHHH-HHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 014426 138 WARGQGQSISSDDDFFTNSVVKQYYK-NHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMAS 216 (425)
Q Consensus 138 W~~~~g~~~~~~~~fy~~~~~~~~~~-~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~ 216 (425)
+ ++...... ..++++. - +...+.|....++||--...+.+.+.+.+.+..+-.
T Consensus 110 ----------------t-dd~~~~~~~til~ay~-~--------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrs 163 (305)
T COG5309 110 ----------------T-DDIHDAVEKTILSAYL-P--------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRS 163 (305)
T ss_pred ----------------c-cchhhhHHHHHHHHHh-c--------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHH
Confidence 0 11111111 1222222 2 566688999999999988777678889999999999
Q ss_pred HhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHH
Q 014426 217 YVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNH 296 (425)
Q Consensus 217 ~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~ 296 (425)
.+++.+-+-+|+... .|.. ...||. .+...||+..|.-|. |.........-.|+..-+ +.
T Consensus 164 av~~agy~gpV~T~d-sw~~------~~~np~-----------l~~~SDfia~N~~aY-wd~~~~a~~~~~f~~~q~-e~ 223 (305)
T COG5309 164 AVKEAGYDGPVTTVD-SWNV------VINNPE-----------LCQASDFIAANAHAY-WDGQTVANAAGTFLLEQL-ER 223 (305)
T ss_pred HHHhcCCCCceeecc-ccee------eeCChH-----------Hhhhhhhhhcccchh-ccccchhhhhhHHHHHHH-HH
Confidence 999888777777643 2211 112442 134457776665554 433321111112221112 22
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCCCc----h---hhhHHHHHHHH
Q 014426 297 IQDAQDTLRKPILLAEFGKSLKTSGA----N---QRDQLFDTVYS 334 (425)
Q Consensus 297 ~~~a~~~~~kPv~i~EfG~~~~~~~~----~---~r~~~~~~~~~ 334 (425)
++.+.. .+||++|+|-|++.+...+ . .+..+++.+..
T Consensus 224 vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~ 267 (305)
T COG5309 224 VQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILN 267 (305)
T ss_pred HHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHh
Confidence 333332 3499999999999885421 1 45555555544
No 39
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=1.5e-08 Score=100.41 Aligned_cols=314 Identities=24% Similarity=0.351 Sum_probs=179.2
Q ss_pred CCCCcEEEeCCeEE-ECCee------EEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEcccc--C--CC--
Q 014426 19 ADDGFITAKGVHLM-LNGSP------FYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFS--D--GG-- 85 (425)
Q Consensus 19 ~~~~fv~v~g~~f~-~~G~p------~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~--~--~~-- 85 (425)
.+.+||.++..++. |||++ ...+|.|. ..++..++.++.+++.++++.+.. . +.
T Consensus 33 e~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~-------------~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw 99 (587)
T COG3934 33 EPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNV-------------WYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNW 99 (587)
T ss_pred ccccCccceeEEEEEecCcchhhhhceecccccH-------------HHHHHHhhhcccCcceEEEEEeecccccCccee
Confidence 35678999988865 79999 55555554 344444555556666666654321 0 00
Q ss_pred ---CCCCC-c----------CCC-CCChHHhH--HHHHHHHHHHHcCCEE---EEecccCccCCCChhhhhhhhhhc---
Q 014426 86 ---DSPLQ-Y----------SPG-SYNEQMFQ--GLDFVISEARKYGIKL---VLSMVNNYDQFGGKKQYVNWARGQ--- 142 (425)
Q Consensus 86 ---~~~~q-~----------~~g-~~~~~~l~--~lD~~i~~A~~~Gi~v---il~l~~~w~~~gG~~~y~~W~~~~--- 142 (425)
|.--| + .|+ .|.+..+. ++|-.|..-.-.+.-+ .....++|.+.+++..|.+|....
T Consensus 100 ~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlv 179 (587)
T COG3934 100 RIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLV 179 (587)
T ss_pred EeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCee
Confidence 10001 0 111 23344444 4555555555555522 233446677788999999997642
Q ss_pred --CCCCC-------CCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCC-----ChHHHH
Q 014426 143 --GQSIS-------SDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADP-----SGKTIQ 208 (425)
Q Consensus 143 --g~~~~-------~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~-----~~~~~~ 208 (425)
|.+.. ....++.|-.....|..|...++.|+.+.+|.+|.+.|++++|.+.|+++..... ....+.
T Consensus 180 svGD~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayf 259 (587)
T COG3934 180 SVGDPASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYF 259 (587)
T ss_pred ecCCcCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhh
Confidence 11111 1123444555566677777788899999999999999999999999999876421 124566
Q ss_pred HHHHHHHH------HhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCC-
Q 014426 209 AWITEMAS------YVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSS- 281 (425)
Q Consensus 209 ~w~~~~~~------~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~- 281 (425)
.|+..+.. .|.-++.-|+.+.+++.-+.+.. .+-..+.....+.+|+-++|..+..|..-..
T Consensus 260 iw~~lal~~ggdGaLiwclsdf~~gsdd~ey~w~p~e-----------l~fgiIradgpek~~a~~~~~fsn~~kdI~~~ 328 (587)
T COG3934 260 IWIRLALDTGGDGALIWCLSDFHLGSDDSEYTWGPME-----------LEFGIIRADGPEKIDAMTLHIFSNNWKDISMC 328 (587)
T ss_pred hhhhhHHhhcCCceEEEEecCCccCCCCCCCcccccc-----------ceeeeecCCCchhhhHHHHHHhccccceeeee
Confidence 67654111 12223333333333222221111 1111233445667888888888877664321
Q ss_pred -c-----hhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCC----Cc--hhhhHHHHHHHHHHHHHhhcCCCcccc
Q 014426 282 -D-----ESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTS----GA--NQRDQLFDTVYSAIYLSARSGGAAVGG 349 (425)
Q Consensus 282 -~-----~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~----~~--~~r~~~~~~~~~~~~~~~~~~~~~~G~ 349 (425)
+ +...-....++++|+..+++ +.||+++.+|+..-... +. ..|+..++++++.-...+.-.++.+|.
T Consensus 329 Sfq~p~~e~~eikp~~~va~~~fv~e~-~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~l~d~kllmipsgpt~g~ 407 (587)
T COG3934 329 SFQPPTYEAGEIKPRDYVAQHIFVAER-LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTMLDDAKLLMIPSGPTAGV 407 (587)
T ss_pred cccCcccccceecchHhhhhceecHhh-hccchhhhcchhHhhhhhhcCCCceEEeccchhhcCCchhheeecCCcccch
Confidence 1 11111223456788888887 89999999999765432 21 167777776554322222333577888
Q ss_pred cccccccC
Q 014426 350 MFWQLFTE 357 (425)
Q Consensus 350 ~~W~~~~~ 357 (425)
..|.+...
T Consensus 408 Ttw~~llk 415 (587)
T COG3934 408 TTWAWLLK 415 (587)
T ss_pred hHHHHHhh
Confidence 99987743
No 40
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.21 E-value=1.8e-05 Score=74.68 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=73.8
Q ss_pred EEEEEeccCCCCCCC--CChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcC-CCC
Q 014426 187 IMAWELMNEPRCYAD--PSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQ-IPG 263 (425)
Q Consensus 187 I~~weL~NEP~~~~~--~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~-~~~ 263 (425)
+-.+..+|||..... .+.+.+....+++.+.+|. +...|......+-....+. . ..+-.+|..... .-.
T Consensus 66 ~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~-----g-~~Wl~~F~~~~~~~~~ 137 (239)
T PF11790_consen 66 SKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPG-----G-LDWLSQFLSACARGCR 137 (239)
T ss_pred ccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCC-----c-cHHHHHHHHhcccCCC
Confidence 334677899998752 2455555555666666774 3332222111111100000 0 011124544433 358
Q ss_pred CcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCc--hhhhHHHHHHHHHHHHHhh
Q 014426 264 IDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSGA--NQRDQLFDTVYSAIYLSAR 341 (425)
Q Consensus 264 iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~~~--~~r~~~~~~~~~~~~~~~~ 341 (425)
+||+++|.|... ... +..++..+.+..+|||.|||||+....... ....+|+++++..+ +
T Consensus 138 ~D~iavH~Y~~~----------~~~----~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~l----d 199 (239)
T PF11790_consen 138 VDFIAVHWYGGD----------ADD----FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWL----D 199 (239)
T ss_pred ccEEEEecCCcC----------HHH----HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHH----h
Confidence 999999999321 112 233444443347899999999986532211 25667777766654 2
Q ss_pred cCCCcccccccc
Q 014426 342 SGGAAVGGMFWQ 353 (425)
Q Consensus 342 ~~~~~~G~~~W~ 353 (425)
+...+..+.+..
T Consensus 200 ~~~~VeryawF~ 211 (239)
T PF11790_consen 200 SQPYVERYAWFG 211 (239)
T ss_pred cCCCeeEEEecc
Confidence 224455555555
No 41
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=98.08 E-value=0.00048 Score=68.35 Aligned_cols=253 Identities=17% Similarity=0.219 Sum_probs=105.8
Q ss_pred eeEEEEeecccccccc-C--CCCcchHHHHHHHHHH--------HHcCCCEEEEccccC----C-------CCC---CCC
Q 014426 36 SPFYANGFNAYWLMNT-G--ANPYLKDKVSSVFQQA--------KEHGLSMARTWAFSD----G-------GDS---PLQ 90 (425)
Q Consensus 36 ~p~~~~G~N~~~~~~~-~--~~~~~~~~~~~~l~~l--------~~~G~N~vRi~~~~~----~-------~~~---~~q 90 (425)
+++-=.|+..+|.... + .....++++.+.|=.. +.+|+|.+|.-+-.- + .|+ .+.
T Consensus 13 QtieGfGaS~aW~a~~~Gk~w~~~~r~~iaDlLFS~~~~~~g~p~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~ 92 (384)
T PF14587_consen 13 QTIEGFGASDAWWANFVGKNWPEEKRNQIADLLFSTENDSNGNPKGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFL 92 (384)
T ss_dssp EE--EEEEE-TTTHHHHHHHS-HHHHHHHHHHHH---B-TTS-B-S---S-EEEE---STTTTTTSS--SSSTT----SB
T ss_pred eeeccccHHHhHHHHHhcccCCHHHHHHHHHHhcCCCcccCCCCCCceeeeeeeccccCCcccccCccCCCcccCCcccc
Confidence 3444567777765543 2 1112234443333222 569999999965311 0 011 223
Q ss_pred cCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCC-CCCCCHHHHHHHHHHHHHH
Q 014426 91 YSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDD-DFFTNSVVKQYYKNHIKTV 169 (425)
Q Consensus 91 ~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~-~fy~~~~~~~~~~~~~~~l 169 (425)
+..|.||-+.=..=..++.+|+++|+..++-+.|.. |-|....|....... .---.++..+.|.+|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNSP---------P~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFSNSP---------PWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SSS----------GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEeecCC---------CHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 445666532212233578999999999988776542 223333332211111 1112366789999999999
Q ss_pred HhccccccccccCCC-CcEEEEEeccCCCCCCC--------CChHHHHHHHHHHHHHhhccCCCceEEeCCCCc----cC
Q 014426 170 LTRINTVTGVAYKDE-PTIMAWELMNEPRCYAD--------PSGKTIQAWITEMASYVKSIDGNHLLEAGLEGF----YG 236 (425)
Q Consensus 170 ~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~~--------~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~----~~ 236 (425)
+++ |+.+ =.|-..+.+|||..... .+.+...+.++.+.+.+++...+..|+++.++- |.
T Consensus 164 v~~--------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~ 235 (384)
T PF14587_consen 164 VKH--------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYK 235 (384)
T ss_dssp HHH--------HHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS-
T ss_pred HHH--------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhh
Confidence 999 6443 24666899999986531 034677888899999999988888888875542 22
Q ss_pred CCCCcccc-------CCCCCCccccchhhcCCCCC-cEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcC--CC
Q 014426 237 PSSSEKQQ-------YNPNFQVGTDFIANNQIPGI-DFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTL--RK 306 (425)
Q Consensus 237 ~~~~~~~~-------~np~~~~g~df~~~~~~~~i-D~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~--~k 306 (425)
........ .+|. ...++. ..+++ .+++-|.| |...+ ...+.-.++ +..+.+++ . +.
T Consensus 236 ~~~~~~~r~~~i~~ff~~~---s~~yi~--~l~~v~~~i~~HsY---wt~~~--~~~l~~~R~---~~~~~~~~-~~~~~ 301 (384)
T PF14587_consen 236 TDKNDWGRGNQIEAFFNPD---SSTYIG--DLPNVPNIISGHSY---WTDSP--WDDLRDIRK---QLADKLDK-YSPGL 301 (384)
T ss_dssp --S-TTS---HHHHHHSTT---STT--T--T-TTEEEEEEE--T---T-SSS--HHHHHHHHH---HHHHHHHT-TSS--
T ss_pred ccCCchhhhhhHHhhcCCC---chhhhh--ccccchhheeeccc---ccCCC--HHHHHHHHH---HHHHHHHh-hCcCC
Confidence 11100000 0111 011111 23444 47899999 43322 112222222 22223333 4 67
Q ss_pred cEEEEeccCCCCC
Q 014426 307 PILLAEFGKSLKT 319 (425)
Q Consensus 307 Pv~i~EfG~~~~~ 319 (425)
.+..+||.+-.+.
T Consensus 302 ~~wqtE~~il~~~ 314 (384)
T PF14587_consen 302 KYWQTEYCILGDN 314 (384)
T ss_dssp EEEE----S----
T ss_pred ceeeeeeeeccCC
Confidence 8999999997764
No 42
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.78 E-value=0.0019 Score=63.49 Aligned_cols=208 Identities=16% Similarity=0.258 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCC--CC-CCCcC----CCC-CChHHhHHHHHHHHHHHHcCCEEEEecc-cC-c
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGG--DS-PLQYS----PGS-YNEQMFQGLDFVISEARKYGIKLVLSMV-NN-Y 126 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~--~~-~~q~~----~g~-~~~~~l~~lD~~i~~A~~~Gi~vil~l~-~~-w 126 (425)
+++.+++.++.++++|+|+|=+-+...|. ++ .+.|. .|. .....++.|..+|++|+++||.|.-=+- .. .
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 56889999999999999998664443332 11 11111 111 1112578899999999999999985541 10 0
Q ss_pred cCCCC-hhhhhhhhh--hcCCCCC----CCCCCCC---CHHHHHHHHHHHHHHHhccccccccccCCC---CcEEEEEe-
Q 014426 127 DQFGG-KKQYVNWAR--GQGQSIS----SDDDFFT---NSVVKQYYKNHIKTVLTRINTVTGVAYKDE---PTIMAWEL- 192 (425)
Q Consensus 127 ~~~gG-~~~y~~W~~--~~g~~~~----~~~~fy~---~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~---p~I~~weL- 192 (425)
...+. ....+.|.. ..+.... .....|- .|++++...+.+++|+++=. +.|+.+-+. |...+++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEecccccccccCCCCCc
Confidence 00000 123345532 1111111 1222333 58999999999999999832 445443321 11111100
Q ss_pred -------cc--CCCCC-CCC-----ChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchh
Q 014426 193 -------MN--EPRCY-ADP-----SGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIA 257 (425)
Q Consensus 193 -------~N--EP~~~-~~~-----~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~ 257 (425)
.. +|... .++ -.+.+..+++++.+.||+++|+..+++...|.++.+. + ...+|...
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y------~---~~~qD~~~ 246 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAY------D---DYYQDWRN 246 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhh------h---heeccHHH
Confidence 00 00000 000 0245666788999999999999999986655442111 1 11234444
Q ss_pred hcCCCCCcEEEEecCCC
Q 014426 258 NNQIPGIDFATLHSYPD 274 (425)
Q Consensus 258 ~~~~~~iD~~s~H~Y~~ 274 (425)
-.....+|++..-.|-.
T Consensus 247 W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 247 WLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHhcCCccEEEeeeccc
Confidence 44457899999999943
No 43
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.0016 Score=63.12 Aligned_cols=229 Identities=15% Similarity=0.170 Sum_probs=117.5
Q ss_pred HcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCC-
Q 014426 70 EHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISS- 148 (425)
Q Consensus 70 ~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~- 148 (425)
++|+..+|+++-+...+ +. |.+|.. .+.| ..-.-+..+|++|+-+. |.. |.|.+..+.-...
T Consensus 77 ~lg~si~Rv~I~~ndfs--l~---g~~d~w-~kel-s~Ak~~in~g~ivfASP---Wsp-------Pa~Mktt~~~ngg~ 139 (433)
T COG5520 77 QLGFSILRVPIDSNDFS--LG---GSADNW-YKEL-STAKSAINPGMIVFASP---WSP-------PASMKTTNNRNGGN 139 (433)
T ss_pred ccCceEEEEEecccccc--cC---CCcchh-hhhc-ccchhhcCCCcEEEecC---CCC-------chhhhhccCcCCcc
Confidence 58999999987433111 11 222221 1111 11122667899998887 433 4444432110000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeccCCCCCCCC-----ChHHHHHHHHHHHHHhhccC
Q 014426 149 DDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE-PTIMAWELMNEPRCYADP-----SGKTIQAWITEMASYVKSID 222 (425)
Q Consensus 149 ~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~~~-----~~~~~~~w~~~~~~~Ir~~d 222 (425)
... -.++....|.+++...+.. ++++ -.+-+..+.|||....+- +++...+++.+ +.+++.
T Consensus 140 ~g~--Lk~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~q---yl~si~ 206 (433)
T COG5520 140 AGR--LKYEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQ---YLASIN 206 (433)
T ss_pred ccc--cchhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHH---hhhhhc
Confidence 001 1345666777777777776 6666 457889999999976321 33444444443 334444
Q ss_pred CCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHh
Q 014426 223 GNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQD 302 (425)
Q Consensus 223 p~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~ 302 (425)
.+.-|.+-....+....+ .|- +........+|++..|.|...-...+ .. +..++
T Consensus 207 ~~~rV~~pes~~~~~~~~-----dp~------lnDp~a~a~~~ilg~H~Ygg~v~~~p-------------~~-lak~~- 260 (433)
T COG5520 207 AEMRVIIPESFKDLPNMS-----DPI------LNDPKALANMDILGTHLYGGQVSDQP-------------YP-LAKQK- 260 (433)
T ss_pred cccEEecchhcccccccc-----ccc------ccCHhHhcccceeEeeecccccccch-------------hh-HhhCC-
Confidence 344444432111111110 110 11112346799999999976522110 00 11111
Q ss_pred cCCCcEEEEeccCCCCCCCchhhhHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 014426 303 TLRKPILLAEFGKSLKTSGANQRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE 357 (425)
Q Consensus 303 ~~~kPv~i~EfG~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 357 (425)
..+|-|+++|.-....+++...| +. -.++..+.....+ +++.|.++|-+.-+
T Consensus 261 ~~gKdlwmte~y~~esd~~s~dr-~~-~~~~~hi~~gm~~-gg~~ayv~W~i~~~ 312 (433)
T COG5520 261 PAGKDLWMTECYPPESDPNSADR-EA-LHVALHIHIGMTE-GGFQAYVWWNIRLD 312 (433)
T ss_pred CcCCceEEeecccCCCCCCcchH-HH-HHHHHHHHhhccc-cCccEEEEEEEeec
Confidence 14899999999887776644344 22 2233333333333 46788888888754
No 44
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.49 E-value=0.0048 Score=64.23 Aligned_cols=251 Identities=17% Similarity=0.132 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcCCCEEEEccccC-CCCC--CCCcCCC-----CCC--hHHhHHHHHHHHHHHHc--CCEEEEecccCcc
Q 014426 60 KVSSVFQQAKEHGLSMARTWAFSD-GGDS--PLQYSPG-----SYN--EQMFQGLDFVISEARKY--GIKLVLSMVNNYD 127 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~~~~~-~~~~--~~q~~~g-----~~~--~~~l~~lD~~i~~A~~~--Gi~vil~l~~~w~ 127 (425)
.++..|. =..+|++.+|+++.+. .... .+...|+ .|+ .+-.+.+--+|.+|.+. +|+++.+. |.
T Consensus 102 ll~~~F~-~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp---WS 177 (496)
T PF02055_consen 102 LLRSLFS-EDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP---WS 177 (496)
T ss_dssp HHHHHHS-TTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE---S-
T ss_pred HHHHHhh-cCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec---CC
Confidence 3455555 2668999999987432 1100 1111222 222 11222222455555553 58888876 64
Q ss_pred CCCChhhhhhhhhhcCCCCCCCCCCCC---CHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeccCCCCCC---
Q 014426 128 QFGGKKQYVNWARGQGQSISSDDDFFT---NSVVKQYYKNHIKTVLTRINTVTGVAYKDE-PTIMAWELMNEPRCYA--- 200 (425)
Q Consensus 128 ~~gG~~~y~~W~~~~g~~~~~~~~fy~---~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~--- 200 (425)
. |.|.+..+.-.. ..... .++..+.|.+|+...++. |+.+ =.|.+..+.|||....
T Consensus 178 p-------P~WMKtn~~~~g--~g~l~g~~~~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~~~ 240 (496)
T PF02055_consen 178 P-------PAWMKTNGSMNG--GGSLKGSLGDEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSDPN 240 (496)
T ss_dssp ---------GGGBTTSSSCS--S-BBSCGTTSHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGSTT
T ss_pred C-------CHHHccCCcCcC--CCccCCCCCchhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCCCC
Confidence 3 678775432111 01111 246778888888888887 8776 3588889999998531
Q ss_pred ---C---CChHHHHHHHHH-HHHHhhccCC--CceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEec
Q 014426 201 ---D---PSGKTIQAWITE-MASYVKSIDG--NHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHS 271 (425)
Q Consensus 201 ---~---~~~~~~~~w~~~-~~~~Ir~~dp--~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~ 271 (425)
+ -+++...+|++. +..++++..+ +..|.+..+.... .|.|.. .-+....+...+|.+.+|.
T Consensus 241 ~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~---------~~~~~~-~il~d~~A~~yv~GiA~Hw 310 (496)
T PF02055_consen 241 YPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN---------LPDYAD-TILNDPEAAKYVDGIAFHW 310 (496)
T ss_dssp -SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---------TTHHHH-HHHTSHHHHTTEEEEEEEE
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---------cchhhh-hhhcChhhHhheeEEEEEC
Confidence 1 145777888875 8888888766 4445443322111 111100 0000011235799999999
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCC----c-h-hhh-HHHHHHHHHHHHHhhcCC
Q 014426 272 YPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKTSG----A-N-QRD-QLFDTVYSAIYLSARSGG 344 (425)
Q Consensus 272 Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~~----~-~-~r~-~~~~~~~~~~~~~~~~~~ 344 (425)
|.+. .. ... |.+ ..++..+|.++.+|-.......+ . + .|. +|... ++..+.+
T Consensus 311 Y~g~---~~--~~~-------l~~---~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~----ii~~lnn-- 369 (496)
T PF02055_consen 311 YGGD---PS--PQA-------LDQ---VHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHD----IIGDLNN-- 369 (496)
T ss_dssp TTCS----H--CHH-------HHH---HHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHH----HHHHHHT--
T ss_pred CCCC---ch--hhH-------HHH---HHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHH----HHHHHHh--
Confidence 9763 10 000 111 11224799999999865432211 1 1 232 23222 3344444
Q ss_pred CcccccccccccC--CCCCC
Q 014426 345 AAVGGMFWQLFTE--GLDSY 362 (425)
Q Consensus 345 ~~~G~~~W~~~~~--g~~~~ 362 (425)
...||+.|.+.-+ |.+.+
T Consensus 370 ~~~gw~~WNl~LD~~GGP~~ 389 (496)
T PF02055_consen 370 WVSGWIDWNLALDENGGPNW 389 (496)
T ss_dssp TEEEEEEEESEBETTS---T
T ss_pred hceeeeeeeeecCCCCCCcc
Confidence 4789999998643 44544
No 45
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=96.90 E-value=0.0013 Score=64.09 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHcCCEEEEecc
Q 014426 101 FQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 101 l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+.|.+.+-|++-|+++|..|.
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLN 130 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLN 130 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-
T ss_pred hhHHHHHHHHHHHhCCEEEEEec
Confidence 46889999999999999999994
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.85 E-value=0.43 Score=46.78 Aligned_cols=270 Identities=14% Similarity=0.185 Sum_probs=135.4
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCC------CcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCC
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPL------QYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFG 130 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~------q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~g 130 (425)
+.+.+++.++.+++.|+|+|=|=+-.+.+.-.+ ....|.. ......+..+++.++++|||+|--+..+-+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 347899999999999999997754433221111 1111221 112467889999999999999977664422211
Q ss_pred Chhhhhhhhhh--cCCCCC-CCCCCCCC---HHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCC-------
Q 014426 131 GKKQYVNWARG--QGQSIS-SDDDFFTN---SVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPR------- 197 (425)
Q Consensus 131 G~~~y~~W~~~--~g~~~~-~~~~fy~~---~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~------- 197 (425)
. ...++|+.. .|.... ....-|.| +++.++-.+..+++++. -+.. |. ++-.==|.
T Consensus 90 a-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdE--------Iq-fDYIRFP~~~~~~~l 157 (316)
T PF13200_consen 90 A-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDE--------IQ-FDYIRFPDEGRLSGL 157 (316)
T ss_pred h-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCE--------EE-eeeeecCCCCccccc
Confidence 1 113556542 121111 11122444 56666667777776653 1111 21 22211122
Q ss_pred -CCCCC----ChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecC
Q 014426 198 -CYADP----SGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSY 272 (425)
Q Consensus 198 -~~~~~----~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y 272 (425)
..... ..+.+..+++.+.+.++..+ ..|++-.-|.-.... +. ..-|+++... .+.+|+++.=.|
T Consensus 158 ~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~--v~vSaDVfG~~~~~~------~~-~~iGQ~~~~~--a~~vD~IsPMiY 226 (316)
T PF13200_consen 158 DYSENDTEESRVDAITDFLAYAREELHPYG--VPVSADVFGYVAWSP------DD-MGIGQDFEKI--AEYVDYISPMIY 226 (316)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhHcC--CCEEEEecccccccC------CC-CCcCCCHHHH--hhhCCEEEeccc
Confidence 00000 12567788888888887765 345543222211000 11 1346666543 578999999999
Q ss_pred CCCCCCCCC-----chhhhHHHHHHHHHHHHHHHhcCCCcE---EEEeccCCCCCC-CchhhhHHHHHHHHHHHHHhhcC
Q 014426 273 PDQWLPSSS-----DESQTSFLNNWLYNHIQDAQDTLRKPI---LLAEFGKSLKTS-GANQRDQLFDTVYSAIYLSARSG 343 (425)
Q Consensus 273 ~~~w~~~~~-----~~~~~~~~~~~i~~~~~~a~~~~~kPv---~i~EfG~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~ 343 (425)
|.+|..+.- .....+.+...+....+.....-.+|+ +|.-|-...... .-..-.+..+.-.+ +++.
T Consensus 227 PSh~~~g~~g~~~P~~~PY~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~~~~~Yg~~ev~aQI~----A~~d- 301 (316)
T PF13200_consen 227 PSHYGPGFFGIDKPDLEPYEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGKNYKEYGPEEVRAQIQ----ALKD- 301 (316)
T ss_pred ccccCcccCCCCCcccChHHHHHHHHHHHHHHhhcCCCCCeEecccccccccccccCccccCHHHHHHHHH----HHHH-
Confidence 999876421 112223344444443333332111333 356665543221 00011122222222 2222
Q ss_pred CCcccccccccc
Q 014426 344 GAAVGGMFWQLF 355 (425)
Q Consensus 344 ~~~~G~~~W~~~ 355 (425)
.+..|+++|.-.
T Consensus 302 ~g~~~~llWna~ 313 (316)
T PF13200_consen 302 AGIEGWLLWNAS 313 (316)
T ss_pred cCCCeEEEECCC
Confidence 368899999754
No 47
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.024 Score=57.01 Aligned_cols=179 Identities=16% Similarity=0.220 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCCEEEEcc--ccCC-CC----CCCCcCCCC------CChHHhHHHHHHHHHHHHcCCEEEEecccCcc
Q 014426 61 VSSVFQQAKEHGLSMARTWA--FSDG-GD----SPLQYSPGS------YNEQMFQGLDFVISEARKYGIKLVLSMVNNYD 127 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~--~~~~-~~----~~~q~~~g~------~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~ 127 (425)
=.+.++.++++-+.++|.+. |.++ .| -|-+..|-. ..|..-=...+++++|++.|.-+.+.+.-.
T Consensus 51 RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~G-- 128 (501)
T COG3534 51 RKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLG-- 128 (501)
T ss_pred HHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecC--
Confidence 34558889999999999865 2221 11 122222322 334444567899999999999999887422
Q ss_pred CCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCC---Ch
Q 014426 128 QFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADP---SG 204 (425)
Q Consensus 128 ~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~---~~ 204 (425)
++|.+.-..|..--.. ....+|. .+-.. .| ++.--+|-.|.|+||-.++... +.
T Consensus 129 -srgvd~ar~~vEY~n~---pggtyws-------------dlR~~----~G--~~~P~nvK~w~lGNEm~GpWq~G~~~a 185 (501)
T COG3534 129 -SRGVDEARNWVEYCNH---PGGTYWS-------------DLRRE----NG--REEPWNVKYWGLGNEMDGPWQCGHKTA 185 (501)
T ss_pred -CccHHHHHHHHHHccC---CCCChhH-------------HHHHh----cC--CCCCcccceEEeccccCCCcccccccC
Confidence 2455544555431100 0111222 11111 11 2333368899999999665432 34
Q ss_pred HHHHHHHHHHHHHhhccCCCc-eEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCC
Q 014426 205 KTIQAWITEMASYVKSIDGNH-LLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPD 274 (425)
Q Consensus 205 ~~~~~w~~~~~~~Ir~~dp~~-lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~ 274 (425)
+.+-.++.+..++.|=.||.. +|..|+.+- ..+ ..|.|. +-+...+...+|++|+|+|-+
T Consensus 186 ~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~---~n~----~~~~W~---~~vl~~~~e~vD~ISlH~Y~G 246 (501)
T COG3534 186 PEYGRLANEYRKYMKYFDPTIENVVCGSANG---ANP----TDPNWE---AVVLEEAYERVDYISLHYYKG 246 (501)
T ss_pred HHHHHHHHHHHHHHhhcCccccceEEeecCC---CCC----CchHHH---HHHHHHHhhhcCeEEEEEecC
Confidence 567778889999999999854 344443221 111 122222 112234457799999999943
No 48
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.19 E-value=0.12 Score=55.74 Aligned_cols=167 Identities=10% Similarity=0.128 Sum_probs=86.7
Q ss_pred HHHHHH-HHHHHHcCCCEEEE-ccccC---CCC--CC---CCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC-cc
Q 014426 59 DKVSSV-FQQAKEHGLSMART-WAFSD---GGD--SP---LQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN-YD 127 (425)
Q Consensus 59 ~~~~~~-l~~l~~~G~N~vRi-~~~~~---~~~--~~---~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~-w~ 127 (425)
..+.+. ++.++++|+|+|=+ +++.. ..| .+ +.+. ..|. ..+.|.++|++|+++||+||+++.-+ -.
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~G--t~~dlk~lV~~~H~~Gi~VilD~V~NH~~ 232 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFG--TPDDFMYFVDACHQAGIGVILDWVPGHFP 232 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccCcC
Confidence 344444 59999999999988 33321 111 11 1111 1222 14578999999999999999998632 11
Q ss_pred C-------CCChhhhhhhhhhcCC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCC
Q 014426 128 Q-------FGGKKQYVNWARGQGQ--SISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRC 198 (425)
Q Consensus 128 ~-------~gG~~~y~~W~~~~g~--~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~ 198 (425)
. +.|.+.|..-....+. .....+-=+.+|.+++.+.+.++..++.. .+.|..+-.-+.++.+.-.+++..
T Consensus 233 ~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey-~iDG~R~D~v~~~~~~~~~~~~~~ 311 (613)
T TIGR01515 233 KDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY-HIDGLRVDAVASMLYLDYSRDEGE 311 (613)
T ss_pred CccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcCHHHhhhhcccccccc
Confidence 0 1111111000000000 00000112457899999999999999760 122322211123443333333321
Q ss_pred C-----CCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 199 Y-----ADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 199 ~-----~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
. ..........+++++.+.||+..|+.++..
T Consensus 312 ~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 312 WSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred ccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 0 000012346788999999999999865443
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.18 E-value=0.033 Score=47.50 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCC----CC-cCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhh
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSP----LQ-YSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~----~q-~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y 135 (425)
.++.++.+++.|+|+|-+++-+-+++.. +. ..|+ +. .+.|-++|++|++.||+|++-+.-.|+.. -...+
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~-L~---~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~~~H 76 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPG-LK---RDLLGEQVEACHERGIRVPAYFDFSWDED-AAERH 76 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCC-CC---cCHHHHHHHHHHHCCCEEEEEEeeecChH-HHHhC
Confidence 3577899999999999997643333211 11 1222 22 47788999999999999998876545431 12456
Q ss_pred hhhhhh--cCCCCC----CCCCCCC---CHHHHHHHHHHHHHHHhc
Q 014426 136 VNWARG--QGQSIS----SDDDFFT---NSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 136 ~~W~~~--~g~~~~----~~~~fy~---~~~~~~~~~~~~~~l~~R 172 (425)
|.|..- .|.+.. ....++. |...++.....++++++|
T Consensus 77 PeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 77 PEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred CceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 888753 233111 0111322 445678889999999998
No 50
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.98 E-value=0.11 Score=55.72 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHcCCCEEEE-ccccCCCCCCCCcCC-CCCCh--HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 57 LKDKVSSVFQQAKEHGLSMART-WAFSDGGDSPLQYSP-GSYNE--QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi-~~~~~~~~~~~q~~~-g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+-.-+.+.|+.++++|+|+|=+ ++|.........+.. -..|+ -..+.|.+++++|+++||+||+++.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4467788899999999999977 333221111000000 00111 1346788999999999999999986
No 51
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.83 E-value=0.33 Score=53.37 Aligned_cols=164 Identities=13% Similarity=0.228 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCCEEEEc-cccC---CCC--CC---CCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc-cCcc--
Q 014426 60 KVSSVFQQAKEHGLSMARTW-AFSD---GGD--SP---LQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV-NNYD-- 127 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~-~~~~---~~~--~~---~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~-~~w~-- 127 (425)
.+++.++.++++|+|+|=+. ++.. ..| .+ +.+.| .|. ..+.|.++|++|+++||+|||++. |+..
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGVILDWVPAHFPKD 343 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 34444699999999999883 2211 111 10 11111 122 246788999999999999999975 3211
Q ss_pred -----CCCChhhhh--hhhhhcCC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEecc----
Q 014426 128 -----QFGGKKQYV--NWARGQGQ--SISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMN---- 194 (425)
Q Consensus 128 -----~~gG~~~y~--~W~~~~g~--~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~N---- 194 (425)
.+.|...|. .+. .+. ......-=|.+|++++.+.+-++..+++. .+.|..+-.-..++.++-..
T Consensus 344 ~~~~~~~~~~~~y~~~~~~--~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~-~iDG~R~D~v~~~~~~~~~~~~g~ 420 (726)
T PRK05402 344 AHGLARFDGTALYEHADPR--EGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEF-HIDGLRVDAVASMLYLDYSRKEGE 420 (726)
T ss_pred ccchhccCCCcceeccCCc--CCccCCCCCccccCCCHHHHHHHHHHHHHHHHHh-CCcEEEECCHHHhhhccccccccc
Confidence 011111110 000 000 00000112567999999999999888760 12221111001111111110
Q ss_pred -CCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 195 -EPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 195 -EP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
.|+............+++++.+.||+..|+.++..
T Consensus 421 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~lia 456 (726)
T PRK05402 421 WIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIA 456 (726)
T ss_pred cccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 01111000112346788999999999999865443
No 52
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.22 Score=50.47 Aligned_cols=217 Identities=17% Similarity=0.259 Sum_probs=118.1
Q ss_pred EEEEeeccccccccCC-CCcchHHHHHHHHHHHHcCCCEEEEccccCCC--CC-CC----CcCCCCC-ChHHhHHHHHHH
Q 014426 38 FYANGFNAYWLMNTGA-NPYLKDKVSSVFQQAKEHGLSMARTWAFSDGG--DS-PL----QYSPGSY-NEQMFQGLDFVI 108 (425)
Q Consensus 38 ~~~~G~N~~~~~~~~~-~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~--~~-~~----q~~~g~~-~~~~l~~lD~~i 108 (425)
--++|+ |+..... .-.++.++.+.|+.++++|+|+|=.=+..+|. ++ .+ ...||.+ -+..++.|-.+|
T Consensus 45 ~eiRGv---Wltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I 121 (418)
T COG1649 45 QEIRGV---WLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVI 121 (418)
T ss_pred ccceeE---EEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHH
Confidence 345666 5542221 22467899999999999999999653333332 11 01 1113332 345677889999
Q ss_pred HHHHHcCCEEEEecccCccCCCCh--------hhhhhhhhhcCCC-C---CCC--CCCCCC---HHHHHHHHHHHHHHHh
Q 014426 109 SEARKYGIKLVLSMVNNYDQFGGK--------KQYVNWARGQGQS-I---SSD--DDFFTN---SVVKQYYKNHIKTVLT 171 (425)
Q Consensus 109 ~~A~~~Gi~vil~l~~~w~~~gG~--------~~y~~W~~~~g~~-~---~~~--~~fy~~---~~~~~~~~~~~~~l~~ 171 (425)
++|+++||.|+.=+ .++.+ ..++.|....... + ... ..+|-| |++++.+.+.+.++++
T Consensus 122 ~~AHkr~l~v~aWf-----~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~ 196 (418)
T COG1649 122 AEAHKRGLEVHAWF-----NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR 196 (418)
T ss_pred HHHHhcCCeeeech-----hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh
Confidence 99999999987532 22211 1223332221100 0 011 345544 7899999999999998
Q ss_pred ccccccccccCCCCcEEEEEeccCCCCCCC-------------C-Ch--------HHHHHHHHHHHHHhhccCCCceEEe
Q 014426 172 RINTVTGVAYKDEPTIMAWELMNEPRCYAD-------------P-SG--------KTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 172 R~N~~tg~~y~~~p~I~~weL~NEP~~~~~-------------~-~~--------~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
+ =.+.|+.+-| ++.|. .+-....+ + +. +...+++.++..+||++.|+..+++
T Consensus 197 ~-YdvDGIQfDd---~fy~~--~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~sv 270 (418)
T COG1649 197 N-YDVDGIQFDD---YFYYP--IPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSV 270 (418)
T ss_pred C-CCCCceecce---eeccc--CccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 7 1122333333 23211 11110000 0 11 2334457888999999999999998
Q ss_pred CCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCC
Q 014426 230 GLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPD 274 (425)
Q Consensus 230 G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~ 274 (425)
...+- ..+.. ..++ ....|+..-.....||++-...|-.
T Consensus 271 sp~n~--~~~~~-f~y~---~~~qDw~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 271 SPFNP--LGSAT-FAYD---YFLQDWRRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred ccCCC--CCccc-eehh---hhhhhHHHHHHcccHhhhhhhhhcc
Confidence 65110 00100 1111 1223555544567889888888843
No 53
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.47 E-value=0.68 Score=50.14 Aligned_cols=165 Identities=12% Similarity=0.194 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCCEEEEc-cccC---CCC--C---CCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc-cCcc--
Q 014426 60 KVSSVFQQAKEHGLSMARTW-AFSD---GGD--S---PLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV-NNYD-- 127 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~-~~~~---~~~--~---~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~-~~w~-- 127 (425)
.+++.|+.++++|+|+|=+. ++.. ..| . .+.+.| .|. ..+.|.++|++|+++||+||+++. |+..
T Consensus 172 ~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~G--t~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~ 248 (633)
T PRK12313 172 LADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYG--TPEDFMYLVDALHQNGIGVILDWVPGHFPKD 248 (633)
T ss_pred HHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 34455799999999999873 2211 111 1 111111 122 246789999999999999999975 3211
Q ss_pred -----CCCChhhhhhhhhh-cCC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEec--cC--
Q 014426 128 -----QFGGKKQYVNWARG-QGQ--SISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELM--NE-- 195 (425)
Q Consensus 128 -----~~gG~~~y~~W~~~-~g~--~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~--NE-- 195 (425)
.+.|...|. +... .+. ......-=|.+|.+++.+.+.++..++.. .+.|..+-.-+.++..+-. .|
T Consensus 249 ~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~-~iDG~R~D~~~~~~~~d~~~~~~~~ 326 (633)
T PRK12313 249 DDGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY-HLDGLRVDAVSNMLYLDYDEEGEWT 326 (633)
T ss_pred cccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcChhhhhhcccccccCcC
Confidence 011111110 0000 000 00011112467999999999888888750 1222111111112111100 00
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeC
Q 014426 196 PRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 196 P~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 230 (425)
|+............+++++.+.||+..|+. +++|
T Consensus 327 ~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~-~lia 360 (633)
T PRK12313 327 PNKYGGRENLEAIYFLQKLNEVVYLEHPDV-LMIA 360 (633)
T ss_pred CcccCCCCCcHHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 110000001134578899999999999986 4444
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.43 E-value=0.47 Score=50.29 Aligned_cols=155 Identities=13% Similarity=0.164 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEccccCC------CCCC---CCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc-cC
Q 014426 56 YLKDKVSSVFQQAKEHGLSMARTWAFSDG------GDSP---LQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV-NN 125 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi~~~~~~------~~~~---~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~-~~ 125 (425)
++-..+.+.|+.++++|+|+|=+.-..+. ++.+ +.+. ..|. ..+.|.++|++|+++||+||+++. |+
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G--~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYG--GPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccC--CHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 45566777899999999999988322110 1111 1111 1222 246788999999999999999985 32
Q ss_pred ccCCC-Chhhhhhhhhhc-CCCCCCCCCCCCCH---HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCC
Q 014426 126 YDQFG-GKKQYVNWARGQ-GQSISSDDDFFTNS---VVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYA 200 (425)
Q Consensus 126 w~~~g-G~~~y~~W~~~~-g~~~~~~~~fy~~~---~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~ 200 (425)
-..-+ ..+.|..|.... ..+... .-=|.++ .+++.+.+.++..++. |+=|- + =+++.......
T Consensus 185 ~~~~~~~~~~~~~y~~~~~~~~wg~-~~n~~~~~~~~vr~~i~~~~~~W~~e--------~~iDG-f-R~D~~~~~~~~- 252 (542)
T TIGR02402 185 FGPEGNYLPRYAPYFTDRYSTPWGA-AINFDGPGSDEVRRYILDNALYWLRE--------YHFDG-L-RLDAVHAIADT- 252 (542)
T ss_pred CCCccccccccCccccCCCCCCCCC-ccccCCCcHHHHHHHHHHHHHHHHHH--------hCCcE-E-EEeCHHHhccc-
Confidence 11100 001111121100 000011 1113456 8888888888888876 43321 1 12222211110
Q ss_pred CCChHHHHHHHHHHHHHhhccCCC--ceEEeC
Q 014426 201 DPSGKTIQAWITEMASYVKSIDGN--HLLEAG 230 (425)
Q Consensus 201 ~~~~~~~~~w~~~~~~~Ir~~dp~--~lV~~G 230 (425)
....+++++.+.+|++.|+ +.+.+|
T Consensus 253 -----~~~~~l~~~~~~~~~~~p~~~~~~li~ 279 (542)
T TIGR02402 253 -----SAKHILEELAREVHELAAELRPVHLIA 279 (542)
T ss_pred -----cHHHHHHHHHHHHHHHCCCCceEEEEE
Confidence 1246788899999999887 244444
No 55
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.24 E-value=0.67 Score=53.30 Aligned_cols=166 Identities=13% Similarity=0.215 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccC----CCC--CC---CCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc-cCcc-
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSD----GGD--SP---LQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV-NNYD- 127 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~----~~~--~~---~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~-~~w~- 127 (425)
+..++.++.++++|+|+|=+.-..+ +.| .+ +.+. ..|. ..+.|.++|++|+++||+||+|+. |+..
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~ 842 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPK 842 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3455668999999999998833211 111 11 1111 1232 256789999999999999999975 3211
Q ss_pred ------CCCChhhhh--hhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEecc-----
Q 014426 128 ------QFGGKKQYV--NWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMN----- 194 (425)
Q Consensus 128 ------~~gG~~~y~--~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~N----- 194 (425)
.+.|...|- ++............-=|.++++++...+-++..+++. .+.|..+---.+++..+-.-
T Consensus 843 d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey-hiDGfR~Dav~~mly~Dysr~~g~w 921 (1224)
T PRK14705 843 DSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF-HIDGLRVDAVASMLYLDYSREEGQW 921 (1224)
T ss_pred chhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCCcEEEeehhhhhhcccccccccc
Confidence 011111110 0000000000000101567899999999999998871 12222111112232222221
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhccCCCceEE
Q 014426 195 EPRCYADPSGKTIQAWITEMASYVKSIDGNHLLE 228 (425)
Q Consensus 195 EP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 228 (425)
.|+............+++++.+.|++..|+.++.
T Consensus 922 ~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~I 955 (1224)
T PRK14705 922 RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMI 955 (1224)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1222211112345778999999999998876444
No 56
>PLN02801 beta-amylase
Probab=95.11 E-value=0.26 Score=50.56 Aligned_cols=129 Identities=16% Similarity=0.303 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChh---
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKK--- 133 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~--- 133 (425)
...++..|+.+|++|+.-|=+-+.+ --.|. .|++|| |..+.++++.+++.|||+.+.+.-+ ..||.-
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWW----GiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD~ 106 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWW----GIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFH--QCGGNVGDA 106 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeee----eeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCCc
Confidence 4688999999999999999884322 13443 588898 7888999999999999987666422 234321
Q ss_pred ---hhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHH
Q 014426 134 ---QYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAW 210 (425)
Q Consensus 134 ---~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w 210 (425)
..|.|...-+. .+.+-||+|+.- .++.. -+.+.+-|+|.......-+.+.++
T Consensus 107 ~~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~Df 161 (517)
T PLN02801 107 VNIPIPQWVRDVGD--SDPDIFYTNRSG----------------------NRNKE-YLSIGVDNLPLFHGRTAVEMYSDY 161 (517)
T ss_pred ccccCCHHHHHhhc--cCCCceeecCCC----------------------CcCcc-eeeeccCcccccCCCCHHHHHHHH
Confidence 24778765332 234567776441 22333 456889999987644223556666
Q ss_pred HHHHHHHhhc
Q 014426 211 ITEMASYVKS 220 (425)
Q Consensus 211 ~~~~~~~Ir~ 220 (425)
++........
T Consensus 162 m~SFr~~F~~ 171 (517)
T PLN02801 162 MKSFRENMAD 171 (517)
T ss_pred HHHHHHHHHH
Confidence 6554444444
No 57
>PLN02705 beta-amylase
Probab=95.11 E-value=0.21 Score=52.15 Aligned_cols=129 Identities=16% Similarity=0.289 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChh---
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKK--- 133 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~--- 133 (425)
...++..|+.||.+|+.-|=+-+.+ --+|. .|+.|| |..+.++++.+++.|||+.+.|.-+ ..||.-
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWW----GiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFH--qCGGNVGD~ 337 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWW----GIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFH--EYGGNASGN 337 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeee----eEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEee--ccCCCCCCc
Confidence 5789999999999999999874322 13343 588898 7888999999999999987766422 223321
Q ss_pred ---hhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHH
Q 014426 134 ---QYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAW 210 (425)
Q Consensus 134 ---~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w 210 (425)
..|.|...-|. .+.+-||+|..- .++... +.|.+-++|-......-+.+.++
T Consensus 338 ~~IPLP~WV~e~g~--~nPDifftDr~G----------------------~rn~Ey-LSlg~D~~pvl~GRTplq~Y~DF 392 (681)
T PLN02705 338 VMISLPQWVLEIGK--DNQDIFFTDREG----------------------RRNTEC-LSWSIDKERVLKGRTGIEVYFDF 392 (681)
T ss_pred ccccCCHHHHHhcc--cCCCceeecCCC----------------------Ccccce-eeeecCcccccCCCCHHHHHHHH
Confidence 25778765332 233567776441 234344 45999999976543233566677
Q ss_pred HHHHHHHhhc
Q 014426 211 ITEMASYVKS 220 (425)
Q Consensus 211 ~~~~~~~Ir~ 220 (425)
++......+.
T Consensus 393 M~SFr~~F~~ 402 (681)
T PLN02705 393 MRSFRSEFDD 402 (681)
T ss_pred HHHHHHHHHH
Confidence 6554444444
No 58
>PLN02905 beta-amylase
Probab=95.08 E-value=0.23 Score=52.11 Aligned_cols=130 Identities=16% Similarity=0.267 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCCh---
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGK--- 132 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~--- 132 (425)
+...++..|..||.+|+.-|=+-+.+ --.|. .|+.|| |..+.++++.+++.|||+.+.|.-+ ..||.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWW----GiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFH--qCGGNVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWW----GIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFH--ECGGNVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeee----eeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 35678999999999999999884332 12343 678898 7888999999999999988776422 23432
Q ss_pred ---hhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHH
Q 014426 133 ---KQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQA 209 (425)
Q Consensus 133 ---~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~ 209 (425)
-..|.|...-+. .+++-||+|..- .++...| .|.+-|+|-......-+.+.+
T Consensus 355 ~~~IPLP~WV~e~g~--~nPDifftDrsG----------------------~rn~EyL-Slg~D~~pvl~GRTplq~Y~D 409 (702)
T PLN02905 355 DVCIPLPHWVAEIGR--SNPDIFFTDREG----------------------RRNPECL-SWGIDKERILRGRTALEVYFD 409 (702)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------CccCcee-eeecccccccCCCCHHHHHHH
Confidence 124678764331 233567776441 2344444 599999997754433356666
Q ss_pred HHHHHHHHhhc
Q 014426 210 WITEMASYVKS 220 (425)
Q Consensus 210 w~~~~~~~Ir~ 220 (425)
+++......+.
T Consensus 410 FM~SFr~~F~~ 420 (702)
T PLN02905 410 YMRSFRVEFDE 420 (702)
T ss_pred HHHHHHHHHHH
Confidence 66554444444
No 59
>PLN02803 beta-amylase
Probab=95.06 E-value=0.21 Score=51.55 Aligned_cols=129 Identities=15% Similarity=0.218 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCCh----
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGK---- 132 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~---- 132 (425)
...++..|+.+|.+|+.-|=+-+.+ --.|. .|+.|| |..+.++++.+++.|||+.+.|.-+ ..||.
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWW----GiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD~ 176 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWW----GLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFH--QCGGNVGDS 176 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeee----eeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCCc
Confidence 4778999999999999999874322 13443 588898 7888999999999999988776422 23432
Q ss_pred --hhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHH
Q 014426 133 --KQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAW 210 (425)
Q Consensus 133 --~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w 210 (425)
-..|+|...-+. .+.+-||+|+.- .+|.. -+.+.+-|+|-......-+.+.++
T Consensus 177 ~~IpLP~WV~e~~~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~Df 231 (548)
T PLN02803 177 CSIPLPPWVLEEMS--KNPDLVYTDRSG----------------------RRNPE-YISLGCDSLPVLRGRTPIQVYSDY 231 (548)
T ss_pred ccccCCHHHHHhhh--cCCCceEecCCC----------------------Ccccc-eeccccccchhccCCCHHHHHHHH
Confidence 124678764331 233567776441 23333 446888899887643222556666
Q ss_pred HHHHHHHhhc
Q 014426 211 ITEMASYVKS 220 (425)
Q Consensus 211 ~~~~~~~Ir~ 220 (425)
.+......+.
T Consensus 232 m~SFr~~F~~ 241 (548)
T PLN02803 232 MRSFRERFKD 241 (548)
T ss_pred HHHHHHHHHH
Confidence 6554444443
No 60
>PLN02161 beta-amylase
Probab=95.04 E-value=0.26 Score=50.58 Aligned_cols=130 Identities=11% Similarity=0.204 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC-----ccCCCC
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN-----YDQFGG 131 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~-----w~~~gG 131 (425)
...++..|+.+|.+|+.-|=+-+.+ --.|. .|+.|| |..+.++++.+++.|||+.+.|.-+ -.+..+
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWW----GiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWW----GIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeee----eeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 4678999999999999999884322 13343 688898 7888999999999999988766422 111112
Q ss_pred hhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHH
Q 014426 132 KKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWI 211 (425)
Q Consensus 132 ~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~ 211 (425)
+ ..|.|...-+. .+.+-||+|+.- .++.. -+.+.+-|+|.......-+.+.++.
T Consensus 189 I-pLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 189 I-SLPLWIREIGD--VNKDIYYRDKNG----------------------FSNND-YLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred c-cCCHHHHhhhc--cCCCceEEcCCC----------------------Ccccc-eeeeecccchhcCCCCHHHHHHHHH
Confidence 2 25778765332 234567776441 23333 4568999999876442225566666
Q ss_pred HHHHHHhhc
Q 014426 212 TEMASYVKS 220 (425)
Q Consensus 212 ~~~~~~Ir~ 220 (425)
+......+.
T Consensus 243 ~SFr~~F~~ 251 (531)
T PLN02161 243 LSFSTKFEP 251 (531)
T ss_pred HHHHHHHHH
Confidence 544444433
No 61
>PLN02960 alpha-amylase
Probab=95.04 E-value=0.59 Score=51.56 Aligned_cols=163 Identities=12% Similarity=0.208 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccC----CCC--C---CCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc-cCccC
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSD----GGD--S---PLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV-NNYDQ 128 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~----~~~--~---~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~-~~w~~ 128 (425)
+.+++.|+.++++|+|+|=+.-..+ ..| . .+.+. ..|. ..+.|.++|++|+++||+|||++. |+...
T Consensus 417 ~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yG--tp~dfk~LVd~aH~~GI~VILDvV~NH~~~ 493 (897)
T PLN02960 417 EFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFG--TPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 493 (897)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 3445679999999999998833221 011 1 01111 1232 246789999999999999999985 32111
Q ss_pred --------CCChh-hhhhhhhhcCC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE--eccC
Q 014426 129 --------FGGKK-QYVNWARGQGQ--SISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWE--LMNE 195 (425)
Q Consensus 129 --------~gG~~-~y~~W~~~~g~--~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~we--L~NE 195 (425)
+.|.+ .|-. ....+. ......-=|.++.+++.+.+-++..++. =.+.|..+-.-.+++... ..++
T Consensus 494 d~~~~L~~FDG~~~~Yf~-~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~E-yhIDGfR~DAV~sMlY~d~g~~~~ 571 (897)
T PLN02960 494 DEMVGLSLFDGSNDCYFH-SGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTE-YRVDGFQFHSLGSMLYTHNGFASF 571 (897)
T ss_pred ccccchhhcCCCccceee-cCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHH-HCCCceeecccceeeeeccCcccc
Confidence 11110 0000 000000 0001111156789999999999998875 123343333333444322 1111
Q ss_pred C-------CCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 196 P-------RCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 196 P-------~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
+ +... ......+++++.+.|++..|+.+...
T Consensus 572 ~G~~~~~~n~~~---d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 572 TGDLDEYCNQYV---DRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred CCcccccCCccC---CchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 1 1111 12467788999999998888775544
No 62
>PRK14706 glycogen branching enzyme; Provisional
Probab=94.98 E-value=0.84 Score=49.35 Aligned_cols=162 Identities=10% Similarity=0.144 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccC----CCC--C---CCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc-cCccC
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSD----GGD--S---PLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV-NNYDQ 128 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~----~~~--~---~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~-~~w~~ 128 (425)
+.+++.++.++++|+|+|-+.-..+ +.| . .+.+. ..|. ..+.|.++|++|.++||+||+++. |+...
T Consensus 168 ~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 168 ELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred HHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 3445556899999999998832222 111 0 01111 1122 246789999999999999999975 32110
Q ss_pred -------CCChhhh--hhhhhhcCCC--CCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE------
Q 014426 129 -------FGGKKQY--VNWARGQGQS--ISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWE------ 191 (425)
Q Consensus 129 -------~gG~~~y--~~W~~~~g~~--~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~we------ 191 (425)
+.|.+.| ..+. .|.. ..+..-=|.++++++...+-++..++.. .+.|..+-.-.+++..+
T Consensus 245 ~~~~l~~~dg~~~y~~~~~~--~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~-~iDG~R~Dav~~~ly~d~~~~~~ 321 (639)
T PRK14706 245 DESGLAHFDGGPLYEYADPR--KGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF-HVDGLRVDAVASMLYLDFSRTEW 321 (639)
T ss_pred chhhhhccCCCcceeccCCc--CCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEeeehheeecccCcccc
Confidence 1111111 1000 0000 0000111457899999999999988751 13332222223333222
Q ss_pred eccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 192 LMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 192 L~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
+-|+.... .......+++++.+.||+..|+.+++.
T Consensus 322 ~~~~~gg~---~n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 322 VPNIHGGR---ENLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred cccccCCc---ccHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 22222221 123456788899999999998764443
No 63
>smart00642 Aamy Alpha-amylase domain.
Probab=94.89 E-value=0.13 Score=45.61 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEccccC-C----CCCCCCcCC-CCCCh--HHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 56 YLKDKVSSVFQQAKEHGLSMARTWAFSD-G----GDSPLQYSP-GSYNE--QMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi~~~~~-~----~~~~~q~~~-g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
++-..+.+.|+.++++|+|+|-+....+ . .+..+.+.. -..++ ...+.+.+++++|+++||+||+++.-
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4457788889999999999998833211 1 000111000 00111 13478899999999999999999863
No 64
>PLN00197 beta-amylase; Provisional
Probab=94.83 E-value=0.28 Score=50.78 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCCh----
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGK---- 132 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~---- 132 (425)
+..++..|+.+|.+|+.-|=+-+.+ --.|. .|+.|| |..+.++++.+++.|||+.+.+.-+ ..||.
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWW----GiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFH--qCGGNVGD~ 196 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWW----GLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFH--QCGGNVGDS 196 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeee----eeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCCc
Confidence 4678999999999999999884332 13343 688898 7888999999999999988776422 23432
Q ss_pred --hhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHH
Q 014426 133 --KQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAW 210 (425)
Q Consensus 133 --~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w 210 (425)
-..|.|...-+. .+.+-||+|..- .+|.. -+.+..-|+|-......-+.+.++
T Consensus 197 ~~IpLP~WV~~~g~--~dpDifftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTpiq~Y~DF 251 (573)
T PLN00197 197 CTIPLPKWVVEEVD--KDPDLAYTDQWG----------------------RRNYE-YVSLGCDTLPVLKGRTPVQCYADF 251 (573)
T ss_pred ccccCCHHHHHhhc--cCCCceeecCCC----------------------Ccccc-eeccccccccccCCCCHHHHHHHH
Confidence 124678765331 234567876442 22333 446888888886543223556666
Q ss_pred HHHHHHHhhc
Q 014426 211 ITEMASYVKS 220 (425)
Q Consensus 211 ~~~~~~~Ir~ 220 (425)
.+........
T Consensus 252 M~SFr~~F~~ 261 (573)
T PLN00197 252 MRAFRDNFKH 261 (573)
T ss_pred HHHHHHHHHH
Confidence 5544333333
No 65
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.50 E-value=0.73 Score=45.04 Aligned_cols=154 Identities=8% Similarity=0.048 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCC---CCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGG---DSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKK 133 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~---~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~ 133 (425)
..+.+.+.++.|+.+|+|.+-++.-..-. .+.+-..+|.|.. +.+.++++.|+++||.||+.+... |=+.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~p----GH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTL----GHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCH----HHHH
Confidence 45789999999999999999886522111 1111122566775 445777899999999999987432 1111
Q ss_pred hhhhhhhhcC-CCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCC---CCCCh
Q 014426 134 QYVNWARGQG-QSI-----SSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCY---ADPSG 204 (425)
Q Consensus 134 ~y~~W~~~~g-~~~-----~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~---~~~~~ 204 (425)
.|..... ..+ ....--.++|++.+..++.++++++-. +-.=...+.|.. +++.-.+.+. .....
T Consensus 88 ---~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f-~s~~~HIG~DE~---~~~g~~~~~~~~~~~~~~ 160 (301)
T cd06565 88 ---FILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELH-PSKYIHIGMDEA---YDLGRGRSLRKHGNLGRG 160 (301)
T ss_pred ---HHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhC-CCCeEEECCCcc---cccCCCHHHHHhcCCCHH
Confidence 1211100 000 001112457889998899999988761 000001112211 2221111110 00123
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 014426 205 KTIQAWITEMASYVKSIDGN 224 (425)
Q Consensus 205 ~~~~~w~~~~~~~Ir~~dp~ 224 (425)
+.+..+++++.+.+|+..++
T Consensus 161 ~l~~~~~~~v~~~v~~~g~~ 180 (301)
T cd06565 161 ELYLEHLKKVLKIIKKRGPK 180 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCE
Confidence 56788999999999999874
No 66
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=94.47 E-value=1.3 Score=44.29 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEcc-ccCCC--CCCCCcCCCCCCh----HHhHHHHHHHHHHHHcCCEEEEecccCccCCC
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWA-FSDGG--DSPLQYSPGSYNE----QMFQGLDFVISEARKYGIKLVLSMVNNYDQFG 130 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~-~~~~~--~~~~q~~~g~~~~----~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~g 130 (425)
..+.++.++.++++|++.+=+-+ |+||- |+. .-..|+- -.-+.+.++.++|+++||++.+-++.. +++-
T Consensus 90 ~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S---~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~ 165 (346)
T PF01120_consen 90 KFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPS---KYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHH 165 (346)
T ss_dssp T--HHHHHHHHHHTT-SEEEEEEE-TT--BSS-----TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCC
T ss_pred cCCHHHHHHHHHHcCCCEEEeehhhcCccccCCC---CCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcC
Confidence 35678999999999999886533 44431 211 1111321 234788999999999999999987632 2110
Q ss_pred ChhhhhhhhhhcCCCCCCCCCCC----CC---HH-HHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCC
Q 014426 131 GKKQYVNWARGQGQSISSDDDFF----TN---SV-VKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADP 202 (425)
Q Consensus 131 G~~~y~~W~~~~g~~~~~~~~fy----~~---~~-~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~ 202 (425)
+.|.. ....... .. ++ ..+.+...+++|++| | +|.++=++........
T Consensus 166 --~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~~--- 221 (346)
T PF01120_consen 166 --PDYPP---------DEEGDENGPADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPDE--- 221 (346)
T ss_dssp --TTTTS---------SCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCCT---
T ss_pred --cccCC---------CccCCcccccccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCcccc---
Confidence 00000 0000000 01 12 344778899999999 9 7888888888765221
Q ss_pred ChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 203 SGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 203 ~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
.. -..++.+.||++.|+.+|.-
T Consensus 222 ---~~--~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 222 ---DW--DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp ---HH--HHHHHHHHHHHHSTTSEEEC
T ss_pred ---cc--CHHHHHHHHHHhCCeEEEec
Confidence 11 12788899999999887764
No 67
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=94.30 E-value=0.68 Score=49.40 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=92.6
Q ss_pred eeccccccccCCCC----cchHHHHHHHHHHHHcCCCEEEEccccC----CCCCCCCc----CC-CCCChHHhHHHHHHH
Q 014426 42 GFNAYWLMNTGANP----YLKDKVSSVFQQAKEHGLSMARTWAFSD----GGDSPLQY----SP-GSYNEQMFQGLDFVI 108 (425)
Q Consensus 42 G~N~~~~~~~~~~~----~~~~~~~~~l~~l~~~G~N~vRi~~~~~----~~~~~~q~----~~-g~~~~~~l~~lD~~i 108 (425)
.+++|.++..+..+ +.++..++.|..+++||+|+|-+.-..+ ++|- .|+ +| -.|- .-+.|.++|
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWG-Yq~~g~yAp~sryG--tPedfk~fV 220 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWG-YQGTGYYAPTSRYG--TPEDFKALV 220 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCC-CCcceeccccccCC--CHHHHHHHH
Confidence 44555555433323 3467889999999999999999944332 1121 111 11 0121 125567889
Q ss_pred HHHHHcCCEEEEecc-cCccC-------CCChhhhh--hhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccc
Q 014426 109 SEARKYGIKLVLSMV-NNYDQ-------FGGKKQYV--NWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTG 178 (425)
Q Consensus 109 ~~A~~~Gi~vil~l~-~~w~~-------~gG~~~y~--~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg 178 (425)
|+|.++||-||||.. ++... |.|...|. ++......+......++..++++..+..-+..-++. =.+.|
T Consensus 221 D~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~-yHiDG 299 (628)
T COG0296 221 DAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEE-YHIDG 299 (628)
T ss_pred HHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHH-hCCcc
Confidence 999999999999975 32211 12221111 000000001112234454677777777666666664 12233
Q ss_pred cccCCCCcEEEE--------EeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCc
Q 014426 179 VAYKDEPTIMAW--------ELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNH 225 (425)
Q Consensus 179 ~~y~~~p~I~~w--------eL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 225 (425)
..+-.-++++.. .+-||..... .-...+.++++.+.|+..-|..
T Consensus 300 lRvDAV~smly~d~~~~~~~~~~n~~ggr~---n~~a~efl~~~n~~i~~~~pg~ 351 (628)
T COG0296 300 LRVDAVASMLYLDYSRAEGEWVPNEYGGRE---NLEAAEFLRNLNSLIHEEEPGA 351 (628)
T ss_pred eeeehhhhhhccchhhhhhcccccccCCcc---cHHHHHHhhhhhhhhcccCCCc
Confidence 222222333322 2334443321 2346677788888888766654
No 68
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.23 E-value=1.4 Score=48.06 Aligned_cols=164 Identities=12% Similarity=0.167 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccC----CCC--CC---CCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc-CccC
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSD----GGD--SP---LQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN-NYDQ 128 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~----~~~--~~---~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~-~w~~ 128 (425)
+..++.++.++++|+|+|=+.-..+ ..| .+ +.+.+ .|. ..+.+.++|++|.++||+||+++.- +...
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3455668999999999998832211 111 11 11111 121 2467899999999999999999862 2111
Q ss_pred -------CCChhhhhhhhhhcCC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe-------
Q 014426 129 -------FGGKKQYVNWARGQGQ--SISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWEL------- 192 (425)
Q Consensus 129 -------~gG~~~y~~W~~~~g~--~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL------- 192 (425)
+.|...|.......|. ......-=|.+|++++...+-++..+++ -.+.|..+-.-..++..+-
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~e-yhIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEH-YHLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHH-hCceEEEEcCHhHhhhhccccccccc
Confidence 1121111100000000 0000011256789999998888888876 1223322211122332221
Q ss_pred -ccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 193 -MNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 193 -~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
-|+-... ..-....+++++.+.||+..|+.++..
T Consensus 426 ~pn~~gg~---en~ea~~Fl~~ln~~v~~~~P~~~~IA 460 (730)
T PRK12568 426 VPNAHGGR---ENLEAVAFLRQLNREIASQFPGVLTIA 460 (730)
T ss_pred cccccCCc---cChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1221111 112356789999999999999875443
No 69
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=93.86 E-value=0.11 Score=49.93 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEcc-ccCC-CCCCCCcCC-CCCCh--HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWA-FSDG-GDSPLQYSP-GSYNE--QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~-~~~~-~~~~~q~~~-g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.-+.+.|+.++++|+|+|-+.- +..+ .+...++.. -..++ ...+.|.++|++|+++||+||+++.
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4566779999999999998833 2221 111111100 00111 1457889999999999999999986
No 70
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=93.72 E-value=1.7 Score=42.43 Aligned_cols=149 Identities=12% Similarity=0.092 Sum_probs=85.1
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCC-------CCCC---------cCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGD-------SPLQ---------YSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~-------~~~q---------~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
..+.+.+.++.|+..++|++.+++-.+-+| +.+. ...|.|.+ +.+.++++.|+++||.||+
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 357899999999999999999876543233 1121 11234654 5567889999999999999
Q ss_pred ecccCccCCCC-hhhhhhhhhh--cCCCCC--CCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe-cc
Q 014426 121 SMVNNYDQFGG-KKQYVNWARG--QGQSIS--SDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWEL-MN 194 (425)
Q Consensus 121 ~l~~~w~~~gG-~~~y~~W~~~--~g~~~~--~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL-~N 194 (425)
.+... +..+. ...|+.-... .+.... ...--.++|++.+..++.+++++.- +. .+.| -| +-
T Consensus 91 EiD~P-GH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~-~~~i---HiGgD 157 (303)
T cd02742 91 EIDMP-GHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FP-DRYL---HIGGD 157 (303)
T ss_pred eccch-HHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CC-CCeE---Eecce
Confidence 87421 11000 0111110000 000000 0111235788888888888888876 42 2222 11 22
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhccC
Q 014426 195 EPRCYADPSGKTIQAWITEMASYVKSID 222 (425)
Q Consensus 195 EP~~~~~~~~~~~~~w~~~~~~~Ir~~d 222 (425)
|.....+ ..+.+..+++++.+.+++..
T Consensus 158 E~~~~~~-~~~l~~~f~~~~~~~v~~~g 184 (303)
T cd02742 158 EAHFKQD-RKHLMSQFIQRVLDIVKKKG 184 (303)
T ss_pred ecCCCCC-HHHHHHHHHHHHHHHHHHcC
Confidence 2221111 13456778899999999877
No 71
>PLN00196 alpha-amylase; Provisional
Probab=92.84 E-value=1.2 Score=45.66 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=49.0
Q ss_pred EEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCC----CCCC---CCcCCCCCChHHhHHHHHHHHH
Q 014426 38 FYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDG----GDSP---LQYSPGSYNEQMFQGLDFVISE 110 (425)
Q Consensus 38 ~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~----~~~~---~q~~~g~~~~~~l~~lD~~i~~ 110 (425)
+.+.|++ |.... .+......+.+.++.++++|++.|=+.-..+. ++.+ +...+..|. ..+.|..+|++
T Consensus 26 v~~Q~F~--W~~~~-~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG--t~~elk~Lv~~ 100 (428)
T PLN00196 26 VLFQGFN--WESWK-QNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG--NEAQLKSLIEA 100 (428)
T ss_pred EEEEeec--cCCCC-CCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC--CHHHHHHHHHH
Confidence 3456777 43211 11223456888899999999999876321111 1111 111111121 23568899999
Q ss_pred HHHcCCEEEEecc
Q 014426 111 ARKYGIKLVLSMV 123 (425)
Q Consensus 111 A~~~Gi~vil~l~ 123 (425)
|+++||+||+++.
T Consensus 101 aH~~GIkVilDvV 113 (428)
T PLN00196 101 FHGKGVQVIADIV 113 (428)
T ss_pred HHHCCCEEEEEEC
Confidence 9999999999975
No 72
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.65 E-value=2.3 Score=45.75 Aligned_cols=143 Identities=19% Similarity=0.298 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCCEEEE-ccccCC-------------CCCCC---CcCCCCCC------hHHhHHHHHHHHHHHHcCCEEE
Q 014426 63 SVFQQAKEHGLSMART-WAFSDG-------------GDSPL---QYSPGSYN------EQMFQGLDFVISEARKYGIKLV 119 (425)
Q Consensus 63 ~~l~~l~~~G~N~vRi-~~~~~~-------------~~~~~---q~~~g~~~------~~~l~~lD~~i~~A~~~Gi~vi 119 (425)
+.|+.|+++|+|+|=+ +++.-. ++.+. .+. +.|. ....+.|.++|++|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999988 333211 01110 010 0111 1124679999999999999999
Q ss_pred EecccCccCCCC--hhhh----hhhhh---hcCCCCC---CCCCC-CCCHHHHHHHHHHHHHHHhccccccccccCCCCc
Q 014426 120 LSMVNNYDQFGG--KKQY----VNWAR---GQGQSIS---SDDDF-FTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPT 186 (425)
Q Consensus 120 l~l~~~w~~~gG--~~~y----~~W~~---~~g~~~~---~~~~f-y~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~ 186 (425)
+++.-+ ..++ ...+ +.|.- ..|.... -..++ +.+|.+++...+.++..+++ |+=| .
T Consensus 247 lDvV~N--H~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iD-G 315 (605)
T TIGR02104 247 MDVVYN--HTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNID-G 315 (605)
T ss_pred EEEEcC--CccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCC-E
Confidence 998632 1110 0001 11110 0010000 00111 34688888888888888876 5432 1
Q ss_pred EEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEE
Q 014426 187 IMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLE 228 (425)
Q Consensus 187 I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 228 (425)
+ =++++.... ..+++++.+.+|++.|+..+.
T Consensus 316 f-R~D~~~~~~----------~~~~~~~~~~~~~~~p~~~li 346 (605)
T TIGR02104 316 F-RFDLMGIHD----------IETMNEIRKALNKIDPNILLY 346 (605)
T ss_pred E-EEechhcCC----------HHHHHHHHHHHHhhCCCeEEE
Confidence 1 134442211 245677888889988876444
No 73
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=92.65 E-value=4.4 Score=44.53 Aligned_cols=164 Identities=13% Similarity=0.189 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCCEEEEccccC----CCC--C---CCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC-ccC-
Q 014426 60 KVSSVFQQAKEHGLSMARTWAFSD----GGD--S---PLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN-YDQ- 128 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~~~~~----~~~--~---~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~-w~~- 128 (425)
..++.|+.++++|+|+|=+....+ ..| . .+.+.+ .|. ..+.|.++|++|+++||+||+++.-+ -..
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 356789999999999998843222 111 1 011111 121 23678899999999999999998532 110
Q ss_pred C-CChhhh----hhhhhhc--CCC--CCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE------ec
Q 014426 129 F-GGKKQY----VNWARGQ--GQS--ISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWE------LM 193 (425)
Q Consensus 129 ~-gG~~~y----~~W~~~~--g~~--~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~we------L~ 193 (425)
. .|...+ ..|.... |.. .....-=|.++++++...+-++..++.- .+.|..+-.-.+++... ..
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey-~IDGfRfDaV~smlY~~hg~~~~f~ 407 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY-KFDGFRFDGVTSMLYHHHGLQMAFT 407 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh-CcccccccchhhhhccccCcccccc
Confidence 0 011000 0111100 000 0000111457889998888888888751 12332232223333221 11
Q ss_pred ---cCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 194 ---NEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 194 ---NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
||-... ........+++.+...|++..|+.+.+.
T Consensus 408 ~~~~~~~g~--~~d~~a~~fL~~~N~~i~~~~p~~~~IA 444 (758)
T PLN02447 408 GNYNEYFGM--ATDVDAVVYLMLANDLLHGLYPEAVTIA 444 (758)
T ss_pred cCcccccCC--ccChHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 221111 1123456788888899999999875443
No 74
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=92.38 E-value=4.7 Score=39.95 Aligned_cols=147 Identities=11% Similarity=0.112 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCC-------CCCc----------CCCCCChHHhHHHHHHHHHHHHcCCEEE
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDS-------PLQY----------SPGSYNEQMFQGLDFVISEARKYGIKLV 119 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~-------~~q~----------~~g~~~~~~l~~lD~~i~~A~~~Gi~vi 119 (425)
..+.+.+.++.|+..++|++-+++..+-+|+ .+.. ..|.|.. +.+.++++.|+++||.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEE
Confidence 3578999999999999999998765443331 1210 1134553 557888999999999999
Q ss_pred EecccCccCCCC-hhhhhhhhhhcCCC--C------CCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEE
Q 014426 120 LSMVNNYDQFGG-KKQYVNWARGQGQS--I------SSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAW 190 (425)
Q Consensus 120 l~l~~~w~~~gG-~~~y~~W~~~~g~~--~------~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~w 190 (425)
+.+... +..+. ...|+.-.. .+.. . ....--.++|++.+..++.+++++.- +. .+.|
T Consensus 93 PEiD~P-GH~~a~~~~~p~l~~-~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~-~~~i--- 158 (329)
T cd06568 93 PEIDMP-GHTNAALAAYPELNC-DGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TP-GPYI--- 158 (329)
T ss_pred EecCCc-HHHHHHHHhChhhcc-CCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CC-CCeE---
Confidence 988421 11000 011222111 0100 0 00111235788888888888888764 32 2221
Q ss_pred Ee-ccCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 014426 191 EL-MNEPRCYADPSGKTIQAWITEMASYVKSIDG 223 (425)
Q Consensus 191 eL-~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp 223 (425)
-| +-|.... ..+.+..+++++.+.+++...
T Consensus 159 HiGgDE~~~~---~~~~~~~f~~~~~~~v~~~Gk 189 (329)
T cd06568 159 HIGGDEAHST---PHDDYAYFVNRVRAIVAKYGK 189 (329)
T ss_pred EEecccCCCC---chHHHHHHHHHHHHHHHHCCC
Confidence 22 2233221 135677888999999998763
No 75
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.47 E-value=12 Score=36.99 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCC----------------------------cCCCCCChHHhHHHHHHH
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQ----------------------------YSPGSYNEQMFQGLDFVI 108 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q----------------------------~~~g~~~~~~l~~lD~~i 108 (425)
..+.+++.++.|+..++|++-+++- | .++ ++ ...|.|.. +.+.+++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHlt-D-~~~-~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv 88 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLN-D-NLI-FNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELI 88 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeec-C-Ccc-cccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHH
Confidence 3578999999999999999988653 3 221 11 01234543 5678899
Q ss_pred HHHHHcCCEEEEecccCccCCCC-hhhhhhhhhhcC-CCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCC-CC
Q 014426 109 SEARKYGIKLVLSMVNNYDQFGG-KKQYVNWARGQG-QSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKD-EP 185 (425)
Q Consensus 109 ~~A~~~Gi~vil~l~~~w~~~gG-~~~y~~W~~~~g-~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~-~p 185 (425)
+.|+++||.||..+... +..+. ...|+.-..... .......--.++|++.+..++.+++++.- +.. .+
T Consensus 89 ~yA~~rgI~vIPEID~P-GH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~--------f~~~~~ 159 (326)
T cd06564 89 AYAKDRGVNIIPEIDSP-GHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG--------FNPKSD 159 (326)
T ss_pred HHHHHcCCeEeccCCCc-HHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh--------cCCCCC
Confidence 99999999999887421 11000 011221111000 00001111246788999889999998887 442 22
Q ss_pred cEEEEEe-ccCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 014426 186 TIMAWEL-MNEPRCYADPSGKTIQAWITEMASYVKSIDG 223 (425)
Q Consensus 186 ~I~~weL-~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp 223 (425)
.| -| +-|..... ...+.+..+++++.+.|++.+.
T Consensus 160 ~~---HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk 194 (326)
T cd06564 160 TV---HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGK 194 (326)
T ss_pred EE---EeccccccccC-ccHHHHHHHHHHHHHHHHHcCC
Confidence 22 12 11222111 1245678899999999999853
No 76
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=91.24 E-value=3.7 Score=41.27 Aligned_cols=230 Identities=17% Similarity=0.179 Sum_probs=118.6
Q ss_pred HHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCC
Q 014426 67 QAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSI 146 (425)
Q Consensus 67 ~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~ 146 (425)
.-++.|+|-||-+..... ..| . =-|+ +.++|++++....+|+-.|. +.=.|..+.-..+ .|-.+
T Consensus 13 ~~~Ei~v~yi~~~~v~h~---~~q-~-~~~~---~t~~d~i~d~~~~~~~~~ie-~~l~~~~l~~~~~--~wq~n----- 76 (428)
T COG3664 13 TDDEIQVNYIRRHGVWHV---NAQ-K-LFYP---FTYIDEIIDTLLDLGLDLIE-LFLIWNNLNTKEH--QWQLN----- 76 (428)
T ss_pred hhhhhceeeehhcceeee---eec-c-ccCC---hHHHHHHHHHHHHhccHHHH-Hhhcccchhhhhh--hcccc-----
Confidence 346889999987653210 111 1 1134 46678889999998844333 2222333221111 23211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCc
Q 014426 147 SSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE-PTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNH 225 (425)
Q Consensus 147 ~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 225 (425)
-......++..+.++++++.| |+-. -+...++..|||+...+ -..+.+-+.. ..|+.+|-
T Consensus 77 -----~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~ad--~~eyfk~y~~---~a~~~~p~- 137 (428)
T COG3664 77 -----VDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLAD--KQEYFKLYDA---TARQRAPS- 137 (428)
T ss_pred -----cCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCcccc--hHHHHHHHHh---hhhccCcc-
Confidence 112235788999999999999 5422 34666899999998743 2233333333 33355554
Q ss_pred eEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCCc--h------h--hhHHHHHHHHH
Q 014426 226 LLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSD--E------S--QTSFLNNWLYN 295 (425)
Q Consensus 226 lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~--~------~--~~~~~~~~i~~ 295 (425)
|-+|. .| ||. .-..|.+ ..+.+||++.|.|...-..-+.. . . -++. .+.+.+
T Consensus 138 -i~vg~-~w-----------~~e--~l~~~~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~-~r~~~d 199 (428)
T COG3664 138 -IQVGG-SW-----------NTE--RLHEFLK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLED-LRGLKD 199 (428)
T ss_pred -eeecc-cc-----------CcH--HHhhhhh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhhH-HHHHHH
Confidence 33432 11 221 0011222 45789999999995321111110 0 0 0111 122333
Q ss_pred HHHHHHhcCCCcEEEEeccCCCCCCCc---h-hhhHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 014426 296 HIQDAQDTLRKPILLAEFGKSLKTSGA---N-QRDQLFDTVYSAIYLSARSGGAAVGGMFWQLFTE 357 (425)
Q Consensus 296 ~~~~a~~~~~kPv~i~EfG~~~~~~~~---~-~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 357 (425)
.++... .++|+++.||-....+... + .|..++...+. +.+....+.-+|.+.+-
T Consensus 200 ~i~~~~--~~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~Lr------~~g~~v~a~~yW~~sdl 257 (428)
T COG3664 200 LIQHHS--LGLPLLLTNWNTLTGPREPTNGSYVRAAYIMRLLR------EAGSPVDAFGYWTNSDL 257 (428)
T ss_pred HHHhcc--CCCcceeecccccCCCccccCceeehHHHHHHHHH------hcCChhhhhhhhhcccc
Confidence 333322 6899999999886654211 1 44444333222 22455666678988864
No 77
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=91.08 E-value=0.59 Score=43.72 Aligned_cols=120 Identities=13% Similarity=0.196 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHcCCEEEEeccc-CccCCCC-----hhhhhh--hhh---------hcCCCC--CCCCCCCCCHH---H
Q 014426 101 FQGLDFVISEARKYGIKLVLSMVN-NYDQFGG-----KKQYVN--WAR---------GQGQSI--SSDDDFFTNSV---V 158 (425)
Q Consensus 101 l~~lD~~i~~A~~~Gi~vil~l~~-~w~~~gG-----~~~y~~--W~~---------~~g~~~--~~~~~fy~~~~---~ 158 (425)
.+..+.+++...+.|.+.|++|.- .|-.--+ ...|+. |.. ..|..+ .....+-.+|. -
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 367789999999999999999851 1100000 001111 111 001000 01111222343 1
Q ss_pred HHHHHHHHHHHHhccccccccccCCC---CcEEEEEeccCCCCCCC------C---ChHHHHHHHHHHHHHhhccCCCce
Q 014426 159 KQYYKNHIKTVLTRINTVTGVAYKDE---PTIMAWELMNEPRCYAD------P---SGKTIQAWITEMASYVKSIDGNHL 226 (425)
Q Consensus 159 ~~~~~~~~~~l~~R~N~~tg~~y~~~---p~I~~weL~NEP~~~~~------~---~~~~~~~w~~~~~~~Ir~~dp~~l 226 (425)
..+..++|..|+++ |++. -.|-.|.|-|||..... | +.+.+..=.-+++++||++||+..
T Consensus 103 ~~y~~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~ 174 (239)
T PF12891_consen 103 PVYMDEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAK 174 (239)
T ss_dssp EEEHHHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSE
T ss_pred HhHHHHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCe
Confidence 12334557777777 5443 35889999999986421 1 223444445678899999999987
Q ss_pred EE
Q 014426 227 LE 228 (425)
Q Consensus 227 V~ 228 (425)
|.
T Consensus 175 v~ 176 (239)
T PF12891_consen 175 VF 176 (239)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 78
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=90.89 E-value=8.1 Score=38.55 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-------CCC------CCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-------SPG------SYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-------~~g------~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
.+.+.+.++.|+..++|++-+++..+-+|+ ++. ..| .|. -+.+.++++.|+++||.||+.+..
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~r-le~~~~P~Lt~~ga~~~~~~YT---~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHITDSQSFP-LESPSYPELSKKGAYSPSEVYT---PEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeEEcCCCce-EeeCCCchhhhccCcCCCceEC---HHHHHHHHHHHHHcCCEEEEeccC
Confidence 478999999999999999998765443332 221 122 344 356788999999999999998742
Q ss_pred CccCCCC-hhhhhhhhhhc-------CCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014426 125 NYDQFGG-KKQYVNWARGQ-------GQSISSDDDFFTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 125 ~w~~~gG-~~~y~~W~~~~-------g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R 172 (425)
- +..+. ...|+.-.... +........-.++|++.+..++.++++++-
T Consensus 93 P-GH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 93 P-GHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred c-hhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 1 11100 01111100000 000000011134678888888888888875
No 79
>PLN02361 alpha-amylase
Probab=90.88 E-value=1.5 Score=44.61 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCC-CCCCCCcCC-CCCCh--HHhHHHHHHHH
Q 014426 34 NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDG-GDSPLQYSP-GSYNE--QMFQGLDFVIS 109 (425)
Q Consensus 34 ~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~-~~~~~q~~~-g~~~~--~~l~~lD~~i~ 109 (425)
+|..+.+.|+| |.... ..--..+.+.++.++++|++.|=+.-..+. ...-..+.. -..++ -..+.|..+|+
T Consensus 9 ~~~~v~lQ~F~--W~~~~---~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~ 83 (401)
T PLN02361 9 NGREILLQAFN--WESHK---HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLR 83 (401)
T ss_pred CCCcEEEEEEe--ccCCc---cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHH
Confidence 67888999998 43221 112357888899999999999977332211 000000000 00111 12457899999
Q ss_pred HHHHcCCEEEEecc
Q 014426 110 EARKYGIKLVLSMV 123 (425)
Q Consensus 110 ~A~~~Gi~vil~l~ 123 (425)
+|+++||+||+++.
T Consensus 84 ~~h~~gi~vi~D~V 97 (401)
T PLN02361 84 KMKQYNVRAMADIV 97 (401)
T ss_pred HHHHcCCEEEEEEc
Confidence 99999999999986
No 80
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.32 E-value=0.9 Score=49.24 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEEE-ccccCC--------------CCCC---CCcCCCCCCh---HHhHHHHHHHHHHHHcCCEEEEec
Q 014426 64 VFQQAKEHGLSMART-WAFSDG--------------GDSP---LQYSPGSYNE---QMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 64 ~l~~l~~~G~N~vRi-~~~~~~--------------~~~~---~q~~~g~~~~---~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
.|+.|+++|+|+|=+ +++.-. ++.+ +.+. +.|.. ..++.|.++|++|+++||+||+++
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALD-PAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 499999999999988 332210 0111 1111 12221 245789999999999999999998
Q ss_pred c
Q 014426 123 V 123 (425)
Q Consensus 123 ~ 123 (425)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 6
No 81
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=89.32 E-value=1.4 Score=46.79 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEccccC-C----CCCCC---CcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 56 YLKDKVSSVFQQAKEHGLSMARTWAFSD-G----GDSPL---QYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi~~~~~-~----~~~~~---q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
++-..+.+.|+.++++|+++|=+.-+.. + ++... ...| .|. ..+.|+.+|++|+++||+||+++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~G--t~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-TYG--TLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3556677889999999999997732211 1 11100 0011 111 246799999999999999999986
No 82
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=88.34 E-value=1.7 Score=46.11 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEc-cccCCCC-CCCCcCC-CCCCh--HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 56 YLKDKVSSVFQQAKEHGLSMARTW-AFSDGGD-SPLQYSP-GSYNE--QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi~-~~~~~~~-~~~q~~~-g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
++-..+.+.|+.++++|+|+|=+- ++..+.. ..+.+.. -..++ ...+.|..+|++|+++||+||+++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345677888999999999999773 2221100 0000000 00111 1347889999999999999999985
No 83
>PRK09505 malS alpha-amylase; Reviewed
Probab=87.92 E-value=2.2 Score=46.49 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHcCCCEEEEc-cccC-------C--------CCCCCCc-CCCCCCh--HHhHHHHHHHHHHHHcCCE
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTW-AFSD-------G--------GDSPLQY-SPGSYNE--QMFQGLDFVISEARKYGIK 117 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~-~~~~-------~--------~~~~~q~-~~g~~~~--~~l~~lD~~i~~A~~~Gi~ 117 (425)
+-.-+.+-|+.++++|+|+|=+- ++.. + .+.-+.+ ..-..|+ ...+.|+.+|++|+++||+
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34457788999999999999762 2211 0 0000000 0001122 1356889999999999999
Q ss_pred EEEecc
Q 014426 118 LVLSMV 123 (425)
Q Consensus 118 vil~l~ 123 (425)
||+++.
T Consensus 308 VilD~V 313 (683)
T PRK09505 308 ILFDVV 313 (683)
T ss_pred EEEEEC
Confidence 999975
No 84
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=87.87 E-value=1.9 Score=49.98 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=60.2
Q ss_pred cEEEeCCeEEECC-eeEEEEeeccccc-cccCCCCcchHHHHHHHHHHHHcCCCEEEE-ccccCCCC-CC------CCcC
Q 014426 23 FITAKGVHLMLNG-SPFYANGFNAYWL-MNTGANPYLKDKVSSVFQQAKEHGLSMART-WAFSDGGD-SP------LQYS 92 (425)
Q Consensus 23 fv~v~g~~f~~~G-~p~~~~G~N~~~~-~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi-~~~~~~~~-~~------~q~~ 92 (425)
++.|. -.|.+|| +.+-+.|+++.-. .... +....+++.|+.++++|+|+|-+ +++.-|.. .+ ++..
T Consensus 98 y~~V~-P~L~i~~~~~lPl~~i~iqTvlsK~m---G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~id 173 (1464)
T TIGR01531 98 YFVVL-PMLYINADKFLPLDSIALQTVLAKLL---GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLN 173 (1464)
T ss_pred EEEeC-CeeEECCCcccCcCceeeeeehhhhc---CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcC
Confidence 34443 5677788 7777888885311 1110 12367999999999999999988 33322210 01 1111
Q ss_pred CCCCC-hHHhHHHHHHHHHHHHc-CCEEEEecc
Q 014426 93 PGSYN-EQMFQGLDFVISEARKY-GIKLVLSMV 123 (425)
Q Consensus 93 ~g~~~-~~~l~~lD~~i~~A~~~-Gi~vil~l~ 123 (425)
|--+. +...+.+.++|+.+++. ||++|+|+.
T Consensus 174 P~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 174 QHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred hhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 21111 12356789999999995 999999986
No 85
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=87.85 E-value=1.9 Score=45.77 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEc-cccCCC-CCCCCcCC-CCCChH--HhHHHHHHHHHHHHcCCEEEEecc
Q 014426 56 YLKDKVSSVFQQAKEHGLSMARTW-AFSDGG-DSPLQYSP-GSYNEQ--MFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi~-~~~~~~-~~~~q~~~-g~~~~~--~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
++-..+.+.|+.++++|+|+|=+- ++.... ...+.+.. -..++. ..+.+.++|++|+++||+||+++.
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 456778888999999999999772 232110 00000000 011221 246789999999999999999986
No 86
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=87.76 E-value=4.1 Score=44.54 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEE-ccccCC--------------CCCCC---CcCCCCCCh-HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 64 VFQQAKEHGLSMART-WAFSDG--------------GDSPL---QYSPGSYNE-QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 64 ~l~~l~~~G~N~vRi-~~~~~~--------------~~~~~---q~~~g~~~~-~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.|+.|+++|+|+|=+ +++.-. ++.+. .+. +.|.. ...+.|.++|++|+++||+||+++.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 599999999999988 333110 01110 011 11211 1356799999999999999999986
No 87
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.75 E-value=11 Score=38.19 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEcc-ccCCC--CCCCCcCCCCCCh----HHhHHHHHHHHHHHHcCCEEEEecccCccCCC
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWA-FSDGG--DSPLQYSPGSYNE----QMFQGLDFVISEARKYGIKLVLSMVNNYDQFG 130 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~-~~~~~--~~~~q~~~g~~~~----~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~g 130 (425)
+.+.++..+.+|++|++.|=+-+ |+||- |+.- -..|+- -.-+.+.++.++|+++||++-+-+.. ++++-
T Consensus 80 ~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~---~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~ 155 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSK---YSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFN 155 (384)
T ss_pred hCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCC---CCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCC
Confidence 35678889999999999886633 34431 2110 011211 03477889999999999999996542 22110
Q ss_pred ChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHH---HHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHH
Q 014426 131 GKKQYVNWARGQGQSISSDDDFFTNSVVKQYY---KNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTI 207 (425)
Q Consensus 131 G~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~---~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~ 207 (425)
+.|.. . .....+-...+...+++ ...+++|+++ |+. .++-++...+-.. .
T Consensus 156 --p~y~~---~----~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~~------~-- 208 (384)
T smart00812 156 --PLYAG---P----TSSDEDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAPD------D-- 208 (384)
T ss_pred --Ccccc---c----cccccccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCcc------c--
Confidence 01110 0 00000111223444444 8999999999 976 5776776543111 1
Q ss_pred HHH-HHHHHHHhhccCCCc
Q 014426 208 QAW-ITEMASYVKSIDGNH 225 (425)
Q Consensus 208 ~~w-~~~~~~~Ir~~dp~~ 225 (425)
.| ..++.+.||++.|+.
T Consensus 209 -~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 209 -YWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred -hhcHHHHHHHHHHhCCCC
Confidence 12 467888999999987
No 88
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.53 E-value=15 Score=36.81 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCC-------CCCc---------------------CCCCCChHHhHHHHHHHH
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDS-------PLQY---------------------SPGSYNEQMFQGLDFVIS 109 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~-------~~q~---------------------~~g~~~~~~l~~lD~~i~ 109 (425)
.+.+.+.++.|+..++|++-+++..+-+|+ .+.. ..|.|. -+.+.++++
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~ 93 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIVA 93 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHHH
Confidence 578999999999999999998765443331 1100 013344 356788899
Q ss_pred HHHHcCCEEEEecccCccCCCC-hhhhhhhhhhcCC-------CCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014426 110 EARKYGIKLVLSMVNNYDQFGG-KKQYVNWARGQGQ-------SISSDDDFFTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 110 ~A~~~Gi~vil~l~~~w~~~gG-~~~y~~W~~~~g~-------~~~~~~~fy~~~~~~~~~~~~~~~l~~R 172 (425)
.|+++||.||+.+... +.... ...|+.-...... ......--.++|++.+..++.++++++-
T Consensus 94 yA~~rgI~VIPEID~P-GH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~l 163 (357)
T cd06563 94 YAAERGITVIPEIDMP-GHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAEL 163 (357)
T ss_pred HHHHcCCEEEEecCCc-hhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 9999999999987421 11000 0111111100000 0000111135678888888888888874
No 89
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=87.35 E-value=19 Score=41.46 Aligned_cols=155 Identities=19% Similarity=0.315 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEE-cccc----C-C----------------CC--CCCC-cCC-CCCCh------HHhHHHH
Q 014426 58 KDKVSSVFQQAKEHGLSMART-WAFS----D-G----------------GD--SPLQ-YSP-GSYNE------QMFQGLD 105 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi-~~~~----~-~----------------~~--~~~q-~~~-g~~~~------~~l~~lD 105 (425)
...+.+.|+.|+++|+|+|=+ +++. + . .| .+.. -.| +.|.. ...+.|.
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHH
Confidence 345566799999999999988 3331 0 0 01 1100 001 22211 1256799
Q ss_pred HHHHHHHHcCCEEEEecc-cCccC---CCCh-hhhhhhhhhcCCCCCC--CCC-CCCCHHHHHHHHHHHHHHHhcccccc
Q 014426 106 FVISEARKYGIKLVLSMV-NNYDQ---FGGK-KQYVNWARGQGQSISS--DDD-FFTNSVVKQYYKNHIKTVLTRINTVT 177 (425)
Q Consensus 106 ~~i~~A~~~Gi~vil~l~-~~w~~---~gG~-~~y~~W~~~~g~~~~~--~~~-fy~~~~~~~~~~~~~~~l~~R~N~~t 177 (425)
++|++|+++||+||+++. |+-.. +.+. +.|-.+....|.+... ..+ -..++.+++...+.++..++.
T Consensus 559 ~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e----- 633 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE----- 633 (1111)
T ss_pred HHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh-----
Confidence 999999999999999975 32110 1010 0010000001110000 011 123578888888889998887
Q ss_pred ccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCc
Q 014426 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGF 234 (425)
Q Consensus 178 g~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~ 234 (425)
|+=+- +=++++..-. ...++.+...+++++|+.++ +| |+|
T Consensus 634 ---y~VDG--FRfDl~g~~d----------~~~~~~~~~~l~~~dP~~~l-iG-E~W 673 (1111)
T TIGR02102 634 ---FKVDG--FRFDMMGDHD----------AASIEIAYKEAKAINPNIIM-IG-EGW 673 (1111)
T ss_pred ---cCCcE--EEEeccccCC----------HHHHHHHHHHHHHhCcCEEE-EE-ecc
Confidence 65431 2256664211 13445566677888997544 33 444
No 90
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.02 E-value=13 Score=36.46 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCC-------CCC-c-C-CCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDS-------PLQ-Y-S-PGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~-------~~q-~-~-~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.+.+.+.++.|+..++|++-+++..+-+|+ .+. . + .|.|.. +.+.++++.|+++||.||+.+.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEId 89 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEID 89 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEeec
Confidence 578999999999999999998765443342 111 0 1 124654 4567889999999999999883
No 91
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=86.84 E-value=1.9 Score=44.98 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=48.4
Q ss_pred EEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEc-cccCCC---CCCCCcC----------CCCCChH--Hh
Q 014426 38 FYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTW-AFSDGG---DSPLQYS----------PGSYNEQ--MF 101 (425)
Q Consensus 38 ~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~-~~~~~~---~~~~q~~----------~g~~~~~--~l 101 (425)
+.+.|++ |..... ......+.+-|+.++++|+|.|=+. ++.... +....+. +|..|+. ..
T Consensus 5 ~~~q~f~--w~~~~~--~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~ 80 (479)
T PRK09441 5 TMMQYFE--WYLPND--GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK 80 (479)
T ss_pred eEEEEEE--eccCCC--ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCH
Confidence 4556665 543211 1123457788999999999988662 222100 0011110 0111221 35
Q ss_pred HHHHHHHHHHHHcCCEEEEecc
Q 014426 102 QGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 102 ~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.|..+|++|+++||+||+++.
T Consensus 81 ~dl~~Li~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 81 EELLNAIDALHENGIKVYADVV 102 (479)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 6789999999999999999986
No 92
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=86.69 E-value=2.6 Score=41.50 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEccccCC---------C-----------CCCC---------C----cCCCCCChHHhH
Q 014426 56 YLKDKVSSVFQQAKEHGLSMARTWAFSDG---------G-----------DSPL---------Q----YSPGSYNEQMFQ 102 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi~~~~~~---------~-----------~~~~---------q----~~~g~~~~~~l~ 102 (425)
.+-+++++.+|.|+=.|+|..=.++-.|. + -|++ + |-|-.+-++.++
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 35589999999999999999876542210 0 0111 1 112223334555
Q ss_pred HHHHHHHHHHHcCCEEEEecccCccCCCC-hhhhh--------hhhhhcCCCCCCCCCC--CCCHHHHHHHHHHHHHHHh
Q 014426 103 GLDFVISEARKYGIKLVLSMVNNYDQFGG-KKQYV--------NWARGQGQSISSDDDF--FTNSVVKQYYKNHIKTVLT 171 (425)
Q Consensus 103 ~lD~~i~~A~~~Gi~vil~l~~~w~~~gG-~~~y~--------~W~~~~g~~~~~~~~f--y~~~~~~~~~~~~~~~l~~ 171 (425)
.=.++++..++.||..|+.=+...-. .. +..|| .|..-. ...| .+||-..+.-+.|+++..+
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~G~VP-~~~~~~~P~a~i~~~~~W~~f~------~~~~L~P~dplF~~i~~~F~~~q~~ 168 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFAGHVP-RAFKRKYPNANITRQGNWNGFC------RPYFLDPTDPLFAEIAKLFYEEQIK 168 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S-EE--TTHHHHSTT--EE---EETTEE--------EEE-SS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCcCCCCC-hHHHhcCCCCEEeeCCCcCCCC------CCceeCCCCchHHHHHHHHHHHHHH
Confidence 56689999999999999875422100 00 01111 121100 0011 2467777777888888888
Q ss_pred ccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 172 RINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 172 R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
. |+ ...+.+-+..||-..... ..+.+.+-.+.+.+.+++.||+..=.+
T Consensus 169 ~--------yG-~~~~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvWvm 216 (333)
T PF05089_consen 169 L--------YG-TDHIYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVWVM 216 (333)
T ss_dssp H--------H----SEEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EEEE
T ss_pred h--------cC-CCceeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 8 88 567999999999988753 233477778888999999999875443
No 93
>PLN02784 alpha-amylase
Probab=85.84 E-value=4.7 Score=44.66 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCC----CCCCC---CcCCCCCChHHhHHHHH
Q 014426 34 NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDG----GDSPL---QYSPGSYNEQMFQGLDF 106 (425)
Q Consensus 34 ~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~----~~~~~---q~~~g~~~~~~l~~lD~ 106 (425)
+|..+.+.|++ |.... +..-...+.+.++.++++|++.|=+.-.... +|.+. ... ..|. ..+.|..
T Consensus 500 ~~~eVmlQgF~--Wds~~--dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~ld-s~yG--T~~ELk~ 572 (894)
T PLN02784 500 SGFEILCQGFN--WESHK--SGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN-SRYG--TIDELKD 572 (894)
T ss_pred CCceEEEEeEE--cCcCC--CCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccC-cCcC--CHHHHHH
Confidence 57788899998 43221 1111357788899999999999977432111 11100 000 0111 2457899
Q ss_pred HHHHHHHcCCEEEEecc
Q 014426 107 VISEARKYGIKLVLSMV 123 (425)
Q Consensus 107 ~i~~A~~~Gi~vil~l~ 123 (425)
+|++|+++||+||+|+.
T Consensus 573 LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 573 LVKSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHHHCCCEEEEEEC
Confidence 99999999999999975
No 94
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=85.54 E-value=19 Score=40.47 Aligned_cols=111 Identities=14% Similarity=0.266 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCEEEEecccCccCCCCh------hhh-hhhhhh---cCCCCCC---CCC-CCCCHHHHHHHHHHH
Q 014426 101 FQGLDFVISEARKYGIKLVLSMVNNYDQFGGK------KQY-VNWARG---QGQSISS---DDD-FFTNSVVKQYYKNHI 166 (425)
Q Consensus 101 l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~------~~y-~~W~~~---~g~~~~~---~~~-fy~~~~~~~~~~~~~ 166 (425)
...+.++|++|+++||+||+++.-+-...+|. +.+ +.|... .| .+.. -.+ -..++.+++...+.+
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G-~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDG-GVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCC-CeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999986321111111 111 111110 01 0000 001 123578888888888
Q ss_pred HHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCc
Q 014426 167 KTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGF 234 (425)
Q Consensus 167 ~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~ 234 (425)
+..++. |+=+ .+ =++++..-. ..+++++.+.+|+++|+. +.+| |+|
T Consensus 482 ~~W~~e--------y~VD-GF-RfDlm~~~~----------~~f~~~~~~~l~~i~pdi-~l~G-EgW 527 (898)
T TIGR02103 482 VVWAKD--------YKVD-GF-RFDLMGHHP----------KAQMLAAREAIKALTPEI-YFYG-EGW 527 (898)
T ss_pred HHHHHH--------cCCC-EE-EEechhhCC----------HHHHHHHHHHHHHhCCCE-EEEe-cCC
Confidence 888876 6544 12 266664332 356677788999999875 4444 566
No 95
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=85.50 E-value=16 Score=36.24 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHH--HHHHHHHHHcCCEEEEecccCccCC---CCh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGL--DFVISEARKYGIKLVLSMVNNYDQF---GGK 132 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~l--D~~i~~A~~~Gi~vil~l~~~w~~~---gG~ 132 (425)
.+++++.++.+++.|+.+==+|+ |..|..- -..-.+|++.+-.. ..+|+.+++.|+++++.++.+-..- ...
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~ 99 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWN--DIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSY 99 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEE--CcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCC
Confidence 57899999999999977654543 2122100 01123666677777 8999999999999999875432110 011
Q ss_pred hhhhhhhhh-------cCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCC
Q 014426 133 KQYVNWARG-------QGQSI--------SSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPR 197 (425)
Q Consensus 133 ~~y~~W~~~-------~g~~~--------~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~ 197 (425)
..|..-... .|.+. ....+ |++|++++.|.+.++.++.. ++-+ .-|.=+|||.
T Consensus 100 ~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~--------~Gvd---g~w~D~~Ep~ 167 (339)
T cd06602 100 PPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPD-FLNPNTQEWWTDEIKDFHDQ--------VPFD---GLWIDMNEPS 167 (339)
T ss_pred HHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcC-CCCHHHHHHHHHHHHHHHhc--------CCCc---EEEecCCCCc
Confidence 112110000 11110 01123 68999999999999887765 3322 2377799996
Q ss_pred CCCCCChHHH-HHHHHHHHHHhhccCCCceEEe
Q 014426 198 CYADPSGKTI-QAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 198 ~~~~~~~~~~-~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
.... -...+ ..+.+.+.+.+++...++.++.
T Consensus 168 ~~~~-~hN~y~~~~~~~~~~~~~~~~~~r~~~~ 199 (339)
T cd06602 168 NFYD-VHNLYGLSEAIATYKALQSIPGKRPFVI 199 (339)
T ss_pred hHhh-hcchhhHHHHHHHHHHHHhcCCCCCEEE
Confidence 4310 00111 2244555666776533344444
No 96
>PLN02877 alpha-amylase/limit dextrinase
Probab=85.20 E-value=34 Score=38.82 Aligned_cols=118 Identities=15% Similarity=0.279 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHcCCEEEEecc-cCccCCCCh-------hhh-hhhhh---hcCCCCCCC---CCC-CCCHHHHHHHHH
Q 014426 101 FQGLDFVISEARKYGIKLVLSMV-NNYDQFGGK-------KQY-VNWAR---GQGQSISSD---DDF-FTNSVVKQYYKN 164 (425)
Q Consensus 101 l~~lD~~i~~A~~~Gi~vil~l~-~~w~~~gG~-------~~y-~~W~~---~~g~~~~~~---~~f-y~~~~~~~~~~~ 164 (425)
...+.++|+.|+++||+||+++. |+-.. +|. +.+ +.|.. ..| .+.+. .+. -.++.+++...+
T Consensus 465 I~efk~mV~~lH~~GI~VImDVVyNHt~~-~g~~~~~s~ld~~vP~YY~r~~~~G-~~~ns~c~n~~Ase~~mvrklIlD 542 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDVVYNHLHS-SGPFDENSVLDKIVPGYYLRRNSDG-FIENSTCVNNTASEHYMVDRLIVD 542 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCccccC-CCCcchhhcccCCCCCceEEECCCC-CcccCCccCCCccCCHHHHHHHHH
Confidence 45689999999999999999975 43211 110 000 00100 011 00000 000 123567777788
Q ss_pred HHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCc
Q 014426 165 HIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGF 234 (425)
Q Consensus 165 ~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~ 234 (425)
-++..++. |+=|- +=++|+..-.... -......++++....+..|...++..| |||
T Consensus 543 sl~yW~~e--------y~VDG--FRFDlmg~i~~~t---m~~~~~~L~~i~~~~~~~dg~~i~lyG-EgW 598 (970)
T PLN02877 543 DLLNWAVN--------YKVDG--FRFDLMGHLMKRT---MVRAKDALQSLTLERDGVDGSSIYLYG-EGW 598 (970)
T ss_pred HHHHHHHH--------hCCCE--EEEEccccccHHH---HHHHHHHHHHHhhhhcccCCCceEEEE-eCC
Confidence 88888877 65441 2367776554321 123334444444444555644455555 677
No 97
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=84.89 E-value=46 Score=33.49 Aligned_cols=247 Identities=20% Similarity=0.257 Sum_probs=115.8
Q ss_pred HHcCCCEEEEcccc-CCC-----C----CCCCcCCCCCChHHhHHHHHHHHHHHHc---CCEEEEecccCccCCCChhhh
Q 014426 69 KEHGLSMARTWAFS-DGG-----D----SPLQYSPGSYNEQMFQGLDFVISEARKY---GIKLVLSMVNNYDQFGGKKQY 135 (425)
Q Consensus 69 ~~~G~N~vRi~~~~-~~~-----~----~~~q~~~g~~~~~~l~~lD~~i~~A~~~---Gi~vil~l~~~w~~~gG~~~y 135 (425)
..+|.|..|+++-+ |.. + ..++-..-.+.++-++.=--+|..|.++ .+++.-+. |..
T Consensus 134 ~Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsP---Wsa------- 203 (518)
T KOG2566|consen 134 EGLGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASP---WSA------- 203 (518)
T ss_pred cCccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecC---CCC-------
Confidence 35678999998743 211 0 0111111122344444333455666554 57776665 433
Q ss_pred hhhhhhcCCCCCCCCCCCCC--HHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe--ccCCCCCCCC---------
Q 014426 136 VNWARGQGQSISSDDDFFTN--SVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWEL--MNEPRCYADP--------- 202 (425)
Q Consensus 136 ~~W~~~~g~~~~~~~~fy~~--~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL--~NEP~~~~~~--------- 202 (425)
|.|.+..|.-... ...-.+ ....+.|.+|.-.+.+. |..+ .|..|.| .|||....+.
T Consensus 204 PgWlKttg~m~G~-G~l~g~~~d~yhqtya~YfvkFlea--------Y~~~-gi~FWglt~qNEPstG~d~~~k~Qtl~f 273 (518)
T KOG2566|consen 204 PGWLKTTGRMNGK-GALLGDPGDIYHQTYARYFVKFLEA--------YAKH-GIQFWGLTTQNEPSTGSDKKWKWQTLGF 273 (518)
T ss_pred Cceeeeccccccc-ccccCCCCchhHHHHHHHHHHHHHH--------HHhc-CceEEeecccCCCCcCcccCCceeeccc
Confidence 3455443211110 111112 24556666666667776 7666 4666776 8999987652
Q ss_pred ChHHHHHHHHH-HHHHhhccC--CCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCC
Q 014426 203 SGKTIQAWITE-MASYVKSID--GNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPS 279 (425)
Q Consensus 203 ~~~~~~~w~~~-~~~~Ir~~d--p~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~ 279 (425)
+.+.-+++++. +--++++-. .+..|.+=+.+= + .-|.|.. +-+-...+...++-+.+|.|.+-..+.
T Consensus 274 tae~qRdFik~dLGPaLa~s~~~knvkllilDD~R-g--------~LP~Wad-tvlnDpeAakYv~GIaVHwY~df~~pa 343 (518)
T KOG2566|consen 274 TAETQRDFIKKDLGPALASSKTTKNVKLLILDDQR-G--------LLPHWAD-TVLNDPEAAKYVHGIAVHWYQDFLEPA 343 (518)
T ss_pred CHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCc-c--------CCCccch-hhccChhhhhhccceEEEeeccccChh
Confidence 34555556543 223333321 222333321110 0 0122210 001111234567788999998732111
Q ss_pred CCchhhhHHHHHHHHHHHHHHHh-cCCCcEEEEeccCCCC--C-CCc-h-hhh-HHHHHHHHHHHHHhhcCCCccccccc
Q 014426 280 SSDESQTSFLNNWLYNHIQDAQD-TLRKPILLAEFGKSLK--T-SGA-N-QRD-QLFDTVYSAIYLSARSGGAAVGGMFW 352 (425)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~a~~-~~~kPv~i~EfG~~~~--~-~~~-~-~r~-~~~~~~~~~~~~~~~~~~~~~G~~~W 352 (425)
.|+....+ ..++=|+=+|-..... + ..+ + .|. +|-.++++.+ . .-..||.=|
T Consensus 344 ---------------~~L~eTh~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dl----n--n~vtGWtdw 402 (518)
T KOG2566|consen 344 ---------------KHLDETHRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDL----N--NHVTGWTDW 402 (518)
T ss_pred ---------------hhhhhHHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhh----h--hhccceeee
Confidence 12222222 2444466666543221 1 111 1 343 5555555543 2 246799999
Q ss_pred ccccC--CCCCCCCCc
Q 014426 353 QLFTE--GLDSYRDGY 366 (425)
Q Consensus 353 ~~~~~--g~~~~~dg~ 366 (425)
.+.-+ |.++|-++|
T Consensus 403 Nl~Ld~~GGP~wv~nf 418 (518)
T KOG2566|consen 403 NLILDAQGGPNWVSNF 418 (518)
T ss_pred eeEecCcCCchhHhcc
Confidence 88754 667765555
No 98
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=84.22 E-value=3.3 Score=45.80 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHcCCCEEEEc-ccc--CCCCCCCCc-CCCCCCh--HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTW-AFS--DGGDSPLQY-SPGSYNE--QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~-~~~--~~~~~~~q~-~~g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+-..+.+.++.++++|+++|=+- ++. .+....+.. .....|+ ...+.++.++++|+++||+||+|+.
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34678899999999999999762 221 111100100 0111122 1356789999999999999999986
No 99
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=83.94 E-value=1.6 Score=43.23 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-------CCC---------CCChHHhHHHHHHHHHHHHcCCEEEEe
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-------SPG---------SYNEQMFQGLDFVISEARKYGIKLVLS 121 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-------~~g---------~~~~~~l~~lD~~i~~A~~~Gi~vil~ 121 (425)
.+.+.+.++.|+..++|++-+++..+-++ +++. ..| .|.. +.+.++++.|+++||.||+.
T Consensus 17 ~~~ik~~id~ma~~k~N~lhlhl~D~~~~-~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 17 VDTIKRLIDQMAYYKLNVLHLHLSDDQGF-RLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSTCB--BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCC-ccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 47899999999999999999876544222 1211 112 3443 56788999999999999988
Q ss_pred cccCccCCCC-hhhhhhhhhh---cCC--C----CCC--CCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEE
Q 014426 122 MVNNYDQFGG-KKQYVNWARG---QGQ--S----ISS--DDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMA 189 (425)
Q Consensus 122 l~~~w~~~gG-~~~y~~W~~~---~g~--~----~~~--~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~ 189 (425)
+... +..+. ...|+.-... ... + ... ..--.++|++.+..++.+++++.- +. .+.|
T Consensus 93 id~P-GH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~~~i-- 160 (351)
T PF00728_consen 93 IDTP-GHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-SKYI-- 160 (351)
T ss_dssp EEES-SS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-SSEE--
T ss_pred ccCc-hHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-CCeE--
Confidence 7422 11111 0112211110 000 0 000 011235788999999999998886 54 3332
Q ss_pred EEe-ccCCCCC--C-CC------------C-hHHHHHHHHHHHHHhhccCCCceEEeC
Q 014426 190 WEL-MNEPRCY--A-DP------------S-GKTIQAWITEMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 190 weL-~NEP~~~--~-~~------------~-~~~~~~w~~~~~~~Ir~~dp~~lV~~G 230 (425)
-| +-|.... . ++ + .+....+++++.+.+++...+ ++.-+
T Consensus 161 -HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~W~ 216 (351)
T PF00728_consen 161 -HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PIIWN 216 (351)
T ss_dssp -EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEEES
T ss_pred -EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEEEc
Confidence 33 4444421 0 00 0 123445678888999987765 44433
No 100
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=83.01 E-value=3.2 Score=40.63 Aligned_cols=56 Identities=21% Similarity=0.390 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
++...+.++.|+..|+. |+|..- ++ |..-++..+.++++++.+|.+.|+++|+|..
T Consensus 15 ~~~~~~Yi~~~~~~Gf~--~IFtsl------~~--~~~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 15 KEKDIAYIDRMHKYGFK--RIFTSL------LI--PEEDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred chhHHHHHHHHHHcCcc--ceeeec------cc--CCchHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 46778999999999999 554321 11 1123456899999999999999999999984
No 101
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=82.43 E-value=15 Score=35.30 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=55.2
Q ss_pred EEE-CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHH
Q 014426 31 LML-NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVIS 109 (425)
Q Consensus 31 f~~-~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~ 109 (425)
+.+ +|+.+.+.|-+.- .+.+.+.+.-+.+|++|+.++|...+-+ ..+|..|..-.-+.+..+-+
T Consensus 21 ~~~g~~~~~~iaGPCsi---------e~~~~~~~~A~~lk~~g~~~~r~~~~kp------RTs~~s~~G~g~~gl~~l~~ 85 (266)
T PRK13398 21 VVIGGEEKIIIAGPCAV---------ESEEQMVKVAEKLKELGVHMLRGGAFKP------RTSPYSFQGLGEEGLKILKE 85 (266)
T ss_pred EEEcCCCEEEEEeCCcC---------CCHHHHHHHHHHHHHcCCCEEEEeeecC------CCCCCccCCcHHHHHHHHHH
Confidence 444 4556677787741 2357888889999999999999966532 12233343323556666777
Q ss_pred HHHHcCCEEEEecccC
Q 014426 110 EARKYGIKLVLSMVNN 125 (425)
Q Consensus 110 ~A~~~Gi~vil~l~~~ 125 (425)
.+++.||.++-++++.
T Consensus 86 ~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 86 VGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHcCCCEEEeeCCh
Confidence 8899999999999864
No 102
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=82.01 E-value=2.4 Score=42.41 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.+...+.++.|++.|++ |+|..-. . |-.-.++.++.+.++++.|+++||+|++|+.
T Consensus 13 ~~~~~~yi~~a~~~Gf~--~iFTSL~------i--pe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 13 FEENKAYIEKAAKYGFK--RIFTSLH------I--PEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHHHHHHCTTEE--EEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHHHHHCCCC--EEECCCC------c--CCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 47889999999999999 4443211 0 1112357889999999999999999999985
No 103
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=81.85 E-value=2 Score=43.27 Aligned_cols=105 Identities=17% Similarity=0.317 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCCh----
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGK---- 132 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~---- 132 (425)
...++..|+.||++|+.-|=+-+.+- -.|. .|++|| |..++++++.+++.||++.+.|.-+ ..||.
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWG----iVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH--~cGgNvgD~ 85 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWG----IVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFH--QCGGNVGDD 85 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHH----HHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S---BSSSTTSS
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEee----eeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeee--cCCCCCCCc
Confidence 35889999999999999998843221 2333 378898 8889999999999999998766322 12321
Q ss_pred --hhhhhhhhhcCC--CC--CCC---------CCCCCCHHHHHHHHHHHHHHHhc
Q 014426 133 --KQYVNWARGQGQ--SI--SSD---------DDFFTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 133 --~~y~~W~~~~g~--~~--~~~---------~~fy~~~~~~~~~~~~~~~l~~R 172 (425)
-..|.|....+. .+ ++. ...+.... .+.|.+|++.+.++
T Consensus 86 ~~IpLP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~ 139 (402)
T PF01373_consen 86 CNIPLPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDN 139 (402)
T ss_dssp SEB-S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHH
Confidence 124778754210 00 000 01122233 67777777777777
No 104
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=81.56 E-value=4.6 Score=44.98 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHcCCCEEEEcc-cc--CCCCCCCCc-CCCCCCh--HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWA-FS--DGGDSPLQY-SPGSYNE--QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~-~~--~~~~~~~q~-~~g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+-..+.+.++.++++|+|+|=+.- +. .+....+.+ .....|+ ...+.+..++++|+++||+||+|+.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 346889999999999999997622 21 111100000 0011122 1346789999999999999999986
No 105
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=81.29 E-value=9.5 Score=36.99 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC-ccCCCChhhh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN-YDQFGGKKQY 135 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~-w~~~gG~~~y 135 (425)
+.+++.+.-+.+++.|+|.+=+- +.. ..+-.+.++.++.+-++-+..+.+||+|.|++.-. ....||.+
T Consensus 55 ~~~R~~~YARllASiGINgvvlN---NVN-----a~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL~-- 124 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLN---NVN-----ANPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGGLP-- 124 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S----SS-------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-S--
T ss_pred chhHHHHHHHHHhhcCCceEEec---ccc-----cChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCCcC--
Confidence 34789999999999999998662 211 11223567789999999999999999999998311 01123321
Q ss_pred hhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCC--ChHHHHHHHHH
Q 014426 136 VNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADP--SGKTIQAWITE 213 (425)
Q Consensus 136 ~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~--~~~~~~~w~~~ 213 (425)
..+ .-||++++.+++-+.+|-++ -|-.-+|-+-=+-+....| -+....+=.+-
T Consensus 125 ------------TaD--Pld~~V~~WW~~k~~eIY~~-----------IPDfgGflVKAdSEGqPGP~~YgRthAdGANm 179 (328)
T PF07488_consen 125 ------------TAD--PLDPEVRQWWKDKADEIYSA-----------IPDFGGFLVKADSEGQPGPFTYGRTHADGANM 179 (328)
T ss_dssp -----------------TTSHHHHHHHHHHHHHHHHH------------TT--EEEE--SBTTB--GGGGT--HHHHHHH
T ss_pred ------------cCC--CCCHHHHHHHHHHHHHHHHh-----------CCCccceEEEecCCCCCCCcccCCCchhhHHH
Confidence 111 23789998888888887655 3446666664322222111 12223333455
Q ss_pred HHHHhhccC
Q 014426 214 MASYVKSID 222 (425)
Q Consensus 214 ~~~~Ir~~d 222 (425)
++++++-..
T Consensus 180 lA~Al~P~G 188 (328)
T PF07488_consen 180 LARALKPHG 188 (328)
T ss_dssp HHHHHGGGT
T ss_pred HHHHhhccC
Confidence 566665443
No 106
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.20 E-value=15 Score=37.87 Aligned_cols=159 Identities=10% Similarity=0.064 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCC--------------------------CCC---CCcCCCCCChHH----hHH
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGG--------------------------DSP---LQYSPGSYNEQM----FQG 103 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~--------------------------~~~---~q~~~g~~~~~~----l~~ 103 (425)
.-+++++.++.|+=+|+|.+=.|...+.- |.+ +..--|-+.++- +-.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 35799999999999999998776321100 100 111122333321 223
Q ss_pred HHHHHHHHHHcCCEEEEecccCccC------C--CChhhhhhhhhhcCCCCCCCC--CC---CCCHHHHHHHHHHHHHHH
Q 014426 104 LDFVISEARKYGIKLVLSMVNNYDQ------F--GGKKQYVNWARGQGQSISSDD--DF---FTNSVVKQYYKNHIKTVL 170 (425)
Q Consensus 104 lD~~i~~A~~~Gi~vil~l~~~w~~------~--gG~~~y~~W~~~~g~~~~~~~--~f---y~~~~~~~~~~~~~~~l~ 170 (425)
-.++|+...+.||.++|.-+...-. + ......+.|.. +.+.. .+ .+||-.++.-..|+++++
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~-----f~s~~~C~l~v~P~dplF~eIgs~Flr~~~ 230 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNN-----FTSRYSCMLLVSPFDPLFQEIGSTFLRHQI 230 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCC-----CCcceeeeEEccCCcchHHHHHHHHHHHHH
Confidence 3588999999999999875421000 0 00000112211 00000 00 235667788888999999
Q ss_pred hccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 171 TRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 171 ~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
+. |+...+|..-+..||...... .++-+..-...+.+..|++|++..-..
T Consensus 231 ke--------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWll 280 (666)
T KOG2233|consen 231 KE--------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLL 280 (666)
T ss_pred HH--------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEee
Confidence 99 998888999999999887653 345555666777888899999986555
No 107
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=80.74 E-value=16 Score=35.85 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=41.9
Q ss_pred CcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCC-cCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 55 PYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQ-YSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 55 ~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q-~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
|++.++=.+.|+.+++.|+|+. ++.+...+-.. .....|.++.++.|.++++.|++.||..+..|+-
T Consensus 11 PWs~e~R~~l~~f~~~~kmN~Y---iYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGRYKMNTY---IYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp ---HHHHHHHHHHHHHTT--EE---EE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred CCCHHHHHHHHHHHHHcCCceE---EECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 5666777788999999999966 33332211111 1223488999999999999999999999999974
No 108
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=80.70 E-value=60 Score=33.04 Aligned_cols=176 Identities=15% Similarity=0.182 Sum_probs=90.3
Q ss_pred EEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCC----cCCC--CCChHHh-HHHHHHHHHH
Q 014426 39 YANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQ----YSPG--SYNEQMF-QGLDFVISEA 111 (425)
Q Consensus 39 ~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q----~~~g--~~~~~~l-~~lD~~i~~A 111 (425)
.+.|.|.|..... + .+.+.+.+.++.++++|++.+=| .+ +|..-. ..-| ..|++.| ..|..+++.+
T Consensus 41 ~pv~~nsW~~~~~--d-~~e~~i~~~a~~~~~~G~e~fvi---DD-GW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i 113 (394)
T PF02065_consen 41 PPVGWNSWEAYYF--D-ITEEKILELADAAAELGYEYFVI---DD-GWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYI 113 (394)
T ss_dssp --EEEESHHHHTT--G---HHHHHHHHHHHHHHT-SEEEE----S-SSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHH
T ss_pred CceEEEcccccCc--C-CCHHHHHHHHHHHHHhCCEEEEE---cC-ccccccCCCcccCCceeEChhhhCCcHHHHHHHH
Confidence 4567886432222 2 24578999999999999996544 22 331100 0111 1233333 4588999999
Q ss_pred HHcCCEEEEecccC--ccCCCChhhhhhhhhhcC-CCCCCC-C---CCCCCHHHHHHHHHHHHHHHhccccccccccCCC
Q 014426 112 RKYGIKLVLSMVNN--YDQFGGKKQYVNWARGQG-QSISSD-D---DFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE 184 (425)
Q Consensus 112 ~~~Gi~vil~l~~~--w~~~gG~~~y~~W~~~~g-~~~~~~-~---~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~ 184 (425)
++.||+.-|=+--. -.+..=...+|+|....+ ...... . .=+++|+++++..+.+..+++. ++=
T Consensus 114 ~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~--------~gi- 184 (394)
T PF02065_consen 114 HSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE--------WGI- 184 (394)
T ss_dssp HHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH--------TT--
T ss_pred HHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh--------cCC-
Confidence 99999987654210 000000123567764321 111111 1 1157899999999999888876 321
Q ss_pred CcEEEEEeccCCCCCCCCC-hHHHHHH---HHHHHHHhhccCCCceEEeCC
Q 014426 185 PTIMAWELMNEPRCYADPS-GKTIQAW---ITEMASYVKSIDGNHLLEAGL 231 (425)
Q Consensus 185 p~I~~weL~NEP~~~~~~~-~~~~~~w---~~~~~~~Ir~~dp~~lV~~G~ 231 (425)
..|- |+..-.......+. ++.+.+. +-++.+.+|+.-|+.+|-.-.
T Consensus 185 dYiK-~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~Cs 234 (394)
T PF02065_consen 185 DYIK-WDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCS 234 (394)
T ss_dssp SEEE-EE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-B
T ss_pred CEEE-eccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 1233 66533333222211 1223332 346788899999999887643
No 109
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=80.41 E-value=32 Score=32.40 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccccccccc
Q 014426 102 QGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAY 181 (425)
Q Consensus 102 ~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y 181 (425)
..++.++..|+++|++|++.+.+. .. + .......++..++.|.+-+..++++ |
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~-~~-~-----------------~~~~~~~~~~~r~~fi~~lv~~~~~--------~ 98 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGG-SP-P-----------------EFTAALNDPAKRKALVDKIINYVVS--------Y 98 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCC-CC-C-----------------cchhhhcCHHHHHHHHHHHHHHHHH--------h
Confidence 456788999999999999998542 11 0 0011245788888887777777777 5
Q ss_pred CCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCC
Q 014426 182 KDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGL 231 (425)
Q Consensus 182 ~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 231 (425)
.=+---+-||-.... .+.+..+++++.+.+++.+ .++++..
T Consensus 99 ~~DGIdiDwE~~~~~-------~~~~~~fv~~Lr~~l~~~~--~~lt~av 139 (253)
T cd06545 99 NLDGIDVDLEGPDVT-------FGDYLVFIRALYAALKKEG--KLLTAAV 139 (253)
T ss_pred CCCceeEEeeccCcc-------HhHHHHHHHHHHHHHhhcC--cEEEEEc
Confidence 544334445532211 3467788888888887643 3555543
No 110
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=80.40 E-value=4.4 Score=48.24 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEc-ccc--CCCCCCCCc-CCCCCChH--HhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTW-AFS--DGGDSPLQY-SPGSYNEQ--MFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~-~~~--~~~~~~~q~-~~g~~~~~--~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
-..+.+.++.++++|+|+|=+- ++. .+....+.. .....|++ ..+.+++++++|+++||+||+|+.-
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4678899999999999999662 221 111000000 00112221 3567899999999999999999863
No 111
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.08 E-value=4.6 Score=38.56 Aligned_cols=62 Identities=10% Similarity=0.264 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+.+++.++.++.+|++.||++.+.. ...+.+...-+...+.|+.+.+.|+++||++.+..+.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDV----YYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccc----ccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 5578889999999999999853311 0111110111345678999999999999999987653
No 112
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=79.87 E-value=4.1 Score=47.46 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEE-ccccCCC--------------CCCC---CcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 63 SVFQQAKEHGLSMART-WAFSDGG--------------DSPL---QYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 63 ~~l~~l~~~G~N~vRi-~~~~~~~--------------~~~~---q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.++.++++|+|+|=+ +++.... +.+. .+. ..|.....+.+.++|++|+++||+||+|+.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPD-PRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcC-hhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 5678999999999988 3332110 1110 111 112212457899999999999999999975
No 113
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.73 E-value=4.2 Score=38.72 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+++.++.++.+|+.+|+++....+ + ...+...-+...+.|.++.+.|+++||++.+..+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 46778889999999999999654221 1 1111111135667899999999999999988865
No 114
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=79.03 E-value=5 Score=37.77 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
+.+++.++.++.+|+..||++.... +.........+...+.|.++.+.|+++||.+.+..++.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR----PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 5567788999999999999864211 10000001123345678899999999999999987654
No 115
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=78.59 E-value=7.3 Score=40.27 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCC-------CCC----------------------------cCCCCCChHHh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDS-------PLQ----------------------------YSPGSYNEQMF 101 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~-------~~q----------------------------~~~g~~~~~~l 101 (425)
..+.+.+.++.|+..++|++-+++..+-+|+ .+. ...|.|..
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~--- 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSR--- 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCH---
Confidence 3589999999999999999998765443331 110 00123543
Q ss_pred HHHHHHHHHHHHcCCEEEEecc
Q 014426 102 QGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 102 ~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+.++++.|+++||.||+.+.
T Consensus 97 ~di~eiv~yA~~rgI~VIPEID 118 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEID 118 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEccC
Confidence 4567889999999999998874
No 116
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=78.12 E-value=19 Score=35.65 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
+.+++.+.++.+++.|+.+==+++-.+ |.. ....-.+|++.+-....+++..++.|+++++.++.+-..-.+.+.|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~ 98 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIE--HTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYK 98 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChH--HhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHH
Confidence 357899999999999987655544211 100 00112367777888889999999999999998864321101112222
Q ss_pred hhhhhc--------CCCC--------CCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCC
Q 014426 137 NWARGQ--------GQSI--------SSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRC 198 (425)
Q Consensus 137 ~W~~~~--------g~~~--------~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~ 198 (425)
. +... |.+. ....| |++|++++.|.+.++.+... .+......|.=+|||..
T Consensus 99 e-~~~~g~~vk~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~---------~~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 99 E-AKDKGYLVKNSDGGDFEGWCWPGSSSWPD-FLNPEVRDWWASLFSYDKYK---------GSTENLYIWNDMNEPSV 165 (339)
T ss_pred H-HHHCCeEEECCCCCEEEEEECCCCcCCcc-CCChhHHHHHHHHHHHHhhc---------ccCCCceEEeccCCccc
Confidence 2 1111 1010 01123 67899999999998887642 12233345667899864
No 117
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=77.81 E-value=54 Score=35.74 Aligned_cols=166 Identities=13% Similarity=0.200 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCC----CC----CCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC-ccC
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGG----DS----PLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN-YDQ 128 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~----~~----~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~-w~~ 128 (425)
...+...|+.++++|+|+|=+-+|.+.. ++ |-..-|++ ...|..+-..| +.++|++|.-=+.-. +..
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw~l--~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAWQL--RTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHHHH--HHhhCCEEEEeccceeecc
Confidence 4678899999999999999887765532 11 11112332 12333343333 889999886433211 100
Q ss_pred CCChhhhhhhhhhcCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE------------
Q 014426 129 FGGKKQYVNWARGQGQSISSDDDFF-----TNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWE------------ 191 (425)
Q Consensus 129 ~gG~~~y~~W~~~~g~~~~~~~~fy-----~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~we------------ 191 (425)
-...+.-..+. ..+.+...+.++| .+|++++...+..+.++.+ .++.|+.|-|+..+--||
T Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~ 486 (671)
T PRK14582 409 DPTLPRVKRLD-TGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLSDYEDASAPAITAYQQ 486 (671)
T ss_pred CCCcchhhhcc-ccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEecccccccccccCCHHHHHHHHH
Confidence 00000000110 0011111111221 2689999999999999875 578899888875443332
Q ss_pred --eccCCCCCCCCChHHH-----------HHHHHHHHHHhhccCCCceEEeC
Q 014426 192 --LMNEPRCYADPSGKTI-----------QAWITEMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 192 --L~NEP~~~~~~~~~~~-----------~~w~~~~~~~Ir~~dp~~lV~~G 230 (425)
|...+.... .+++.+ ..+..++++.+|...|..+.|.-
T Consensus 487 ~g~~~~~~~~~-~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~~~~~~~~tar 537 (671)
T PRK14582 487 AGFSGSLSEIR-QNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPQVKTAR 537 (671)
T ss_pred cCCCcchhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceeec
Confidence 221111110 012333 34567788888988876666653
No 118
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=77.33 E-value=34 Score=33.69 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 153 FTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 153 y~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
+.+++.++.+.++++.++++ -|.|.-+ .++=+|+..+|+........+...+++.++++++|+..|+.+|..
T Consensus 140 ~~~~~W~~il~~rl~~l~~k--GfDGvfL---D~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 140 YWDPEWKAIAFSYLDRVIAQ--GFDGVYL---DLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIP 211 (315)
T ss_pred cccHHHHHHHHHHHHHHHHc--CCCeEee---ccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 34678888888888877765 3444311 245567777665432211235677889999999999999876653
No 119
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=77.17 E-value=7.2 Score=40.44 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEccccCC--CCCCCCcCC-CCCCh--HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 56 YLKDKVSSVFQQAKEHGLSMARTWAFSDG--GDSPLQYSP-GSYNE--QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 56 ~~~~~~~~~l~~l~~~G~N~vRi~~~~~~--~~~~~q~~~-g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
++-.-+.+-|+.++++|+++|=+--+... .+....... -..++ ..++.++.++++|+++||+||+++.
T Consensus 26 Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 26 GDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred ccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34455668999999999999966221111 010000000 01111 2467889999999999999999986
No 120
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=76.55 E-value=7.3 Score=37.28 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+++.++.++.+|+++|+++.... ..+...-..-+...+.|.++.+.|+++||++.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDV----YYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCccc----ccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 4578889999999999999853210 000000001124567888999999999999999865
No 121
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=76.51 E-value=7.3 Score=42.43 Aligned_cols=58 Identities=24% Similarity=0.451 Sum_probs=40.5
Q ss_pred HHHHHHcCCCEEEEc-ccc--CC------------CCCCC---CcCCCCCC-----hHHhHHHHHHHHHHHHcCCEEEEe
Q 014426 65 FQQAKEHGLSMARTW-AFS--DG------------GDSPL---QYSPGSYN-----EQMFQGLDFVISEARKYGIKLVLS 121 (425)
Q Consensus 65 l~~l~~~G~N~vRi~-~~~--~~------------~~~~~---q~~~g~~~-----~~~l~~lD~~i~~A~~~Gi~vil~ 121 (425)
|+.+|++|+++|.+. ++. +. ++.++ -|. +.|. ...+.-+..+|.+++++||.||+|
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999992 221 10 01221 111 2232 246788999999999999999999
Q ss_pred cc
Q 014426 122 MV 123 (425)
Q Consensus 122 l~ 123 (425)
+.
T Consensus 285 VV 286 (697)
T COG1523 285 VV 286 (697)
T ss_pred Ee
Confidence 86
No 122
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=76.28 E-value=26 Score=31.16 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCC--CcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPL--QYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~--q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
...++..+.+++.|+.++=+........... ....-. -++.++.+...++.|++.|++.+......+....
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~------ 99 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGP------ 99 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSST------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCccccccc------
Confidence 4677888889999999777654332211100 001111 3566899999999999999998766432110000
Q ss_pred hhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHH
Q 014426 137 NWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMAS 216 (425)
Q Consensus 137 ~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~ 216 (425)
-...++..+.+.+.++.+++. -+.+--.++.|....+......+ ++++..
T Consensus 100 ---------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i~lE~~~~~~~~~~~~-------~~~~~~ 149 (213)
T PF01261_consen 100 ---------------EDDTEENWERLAENLRELAEI--------AEEYGVRIALENHPGPFSETPFS-------VEEIYR 149 (213)
T ss_dssp ---------------TSSHHHHHHHHHHHHHHHHHH--------HHHHTSEEEEE-SSSSSSSEESS-------HHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHhh--------hhhhcceEEEecccCccccchhh-------HHHHHH
Confidence 012345666677777777776 44444455555444443321101 456667
Q ss_pred HhhccCCCc
Q 014426 217 YVKSIDGNH 225 (425)
Q Consensus 217 ~Ir~~dp~~ 225 (425)
.++++++..
T Consensus 150 ~l~~~~~~~ 158 (213)
T PF01261_consen 150 LLEEVDSPN 158 (213)
T ss_dssp HHHHHTTTT
T ss_pred HHhhcCCCc
Confidence 777777544
No 123
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=75.90 E-value=12 Score=37.28 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCC-HHHHHHHHHHHHHHHhccccccccccCCC
Q 014426 106 FVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTN-SVVKQYYKNHIKTVLTRINTVTGVAYKDE 184 (425)
Q Consensus 106 ~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~-~~~~~~~~~~~~~l~~R~N~~tg~~y~~~ 184 (425)
..++.|+|+|++|+-+++..|. ++. .|.. .+..+ ++.+..+.+-+-.|++. |+=+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~--~~~----~~~~----------~lL~~~~~~~~~~a~kLv~lak~--------yGfD 105 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT--GQV----EWLE----------DFLKKDEDGSFPVADKLVEVAKY--------YGFD 105 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC--Cch----HHHH----------HHhccCcccchHHHHHHHHHHHH--------hCCC
Confidence 4579999999999999987654 222 2221 12333 55566677777777876 6554
Q ss_pred CcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEE
Q 014426 185 PTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLE 228 (425)
Q Consensus 185 p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 228 (425)
- ++ +.+-|.+. .....+.+.++++++.+..++..|+..|.
T Consensus 106 G-w~-iN~E~~~~--~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 106 G-WL-INIETELG--DAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred c-eE-eeeeccCC--cHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 3 22 33333331 11124688999999999999988887775
No 124
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.74 E-value=6.8 Score=37.49 Aligned_cols=62 Identities=11% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+.+++.++.++.+|+..|++..... +........-+...+.|..+.+.|+++||.+.+..+.
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDV----YYEQANNETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc----cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 4578889999999999999853211 1110000011234578899999999999999888753
No 125
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=75.55 E-value=22 Score=35.56 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC
Q 014426 105 DFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE 184 (425)
Q Consensus 105 D~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~ 184 (425)
+.++..|+++|++|++.-. + + ...-.++..++.|.+-+-.++++ |.=+
T Consensus 67 ~~~~~~A~~~~v~v~~~~~-~-------~----------------~~~l~~~~~R~~fi~siv~~~~~--------~gfD 114 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGD-V-------P----------------LEQISNPTYRTQWIQQKVELAKS--------QFMD 114 (358)
T ss_pred HHHHHHHHHcCCEEEEECc-c-------C----------------HHHcCCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 3788999999999997521 0 0 01245788888888777778877 4433
Q ss_pred CcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeC
Q 014426 185 PTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 185 p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 230 (425)
---+-||--+.. .....+.+..+++++.+.+++..++-+|++.
T Consensus 115 GIdIDwE~p~~~---~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 115 GINIDIEQPITK---GSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred eEEEcccCCCCC---CcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 333446543221 1112457888999999999987777777764
No 126
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=73.92 E-value=11 Score=40.48 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEcc-ccCCC-CC-CCCcC-CCCCC-------h--HHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 62 SSVFQQAKEHGLSMARTWA-FSDGG-DS-PLQYS-PGSYN-------E--QMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~-~~~~~-~~-~~q~~-~g~~~-------~--~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+...+.++++|++.|=+-- +..|+ |. ...|. .|.|| + -.++.++++++.|+++||+||++|.-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVp 152 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIP 152 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4668889999999987622 22211 10 00011 12232 2 24578899999999999999999963
No 127
>PRK09936 hypothetical protein; Provisional
Probab=73.92 E-value=90 Score=30.27 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHcCCCEEEE-ccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 57 LKDKVSSVFQQAKEHGLSMART-WAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi-~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+.+++.++.++..|++++=+ |.-. |+ + .|... =.-|-+.++.|++.||+|++-|.
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQWt~y-G~------~--~fg~~-~g~La~~l~~A~~~Gl~v~vGL~ 93 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQWTRY-GD------A--DFGGQ-RGWLAKRLAAAQQAGLKLVVGLY 93 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeec-cC------C--Ccccc-hHHHHHHHHHHHHcCCEEEEccc
Confidence 3589999999999999999866 4321 10 0 11111 13466889999999999999985
No 128
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=73.71 E-value=12 Score=40.26 Aligned_cols=143 Identities=19% Similarity=0.223 Sum_probs=64.5
Q ss_pred HHHHHHHHc--CCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHH-HHHHHHHHhccccccccccC
Q 014426 106 FVISEARKY--GIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYY-KNHIKTVLTRINTVTGVAYK 182 (425)
Q Consensus 106 ~~i~~A~~~--Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~-~~~~~~l~~R~N~~tg~~y~ 182 (425)
.++++|+++ +|++.+-. |. .|.|.... ...-|.++.....| .+++.-..+. |+
T Consensus 116 ~L~~eAKkrNP~ikl~~L~---W~-------~PgW~~~g------~~~~~~~~~~~a~Y~~~wl~ga~~~--------~g 171 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLP---WG-------FPGWVGNG------WNWPYDNPQLTAYYVVSWLLGAKKT--------HG 171 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEE---S--------B-GGGGTT------SS-TTSSHHHHHHHHHHHHHHHHHH--------H-
T ss_pred hhHHHHHhhCCCCeEEEec---cC-------CCccccCC------CCCcccchhhhhHHHHHHHHHHHHH--------hC
Confidence 567889888 56655443 43 36777531 01224556555444 3444333332 33
Q ss_pred CCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchh-hcCC
Q 014426 183 DEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIA-NNQI 261 (425)
Q Consensus 183 ~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~-~~~~ 261 (425)
= .|-...++||-... .+|++.+...+.+.+-+++=.++.++++.... .+... ....
T Consensus 172 l--~idYvg~~NEr~~~--------~~~ik~lr~~l~~~gy~~vkiva~D~~~~~~~-------------~~m~~D~~l~ 228 (669)
T PF02057_consen 172 L--DIDYVGIWNERGFD--------VNYIKWLRKALNSNGYNKVKIVAADNNWESIS-------------DDMLSDPELR 228 (669)
T ss_dssp ------EE-S-TTS-----------HHHHHHHHHHHHHTT-TT-EEEEEEE-STTHH-------------HHHHH-HHHH
T ss_pred C--CceEechhhccCCC--------hhHHHHHHHHHhhccccceEEEEeCCCccchh-------------hhhhcCHHHH
Confidence 2 35555678998653 36777777777777766544444433322100 01111 0113
Q ss_pred CCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCC
Q 014426 262 PGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKS 316 (425)
Q Consensus 262 ~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~ 316 (425)
..+|+++.| ||... . .+.++. .+|||+-+|=+..
T Consensus 229 ~avdvig~H-Y~~~~---~----------------~~~a~~-~~K~lW~SE~~s~ 262 (669)
T PF02057_consen 229 NAVDVIGYH-YPGTY---S----------------SKNAKL-TGKPLWSSEDYST 262 (669)
T ss_dssp HH--EEEEE-S-TT----------------------HHHHH-HT-EEEEEEEE-S
T ss_pred hcccEeccc-cCCCC---c----------------HHHHHH-hCCCeEEcCCccc
Confidence 468999999 66531 0 011233 6899999996554
No 129
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.70 E-value=14 Score=35.01 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
+++.+.+.-+.++++|++.+|--.|.+ ..+|..|-.-.++.|..+.+.+++.||.++-++++.
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kp------Rts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKP------RTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCC------CCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 357777888889999999999754421 235556655566788999999999999999999764
No 130
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=72.42 E-value=10 Score=35.86 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
+.+++.++.++.+|+..|+++.... +-...+...-+...+.|.++.+.|+++||++.+..+|.
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKT----PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 4578889999999999999853211 00000011112345677888999999999999987664
No 131
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=72.41 E-value=72 Score=30.88 Aligned_cols=236 Identities=14% Similarity=0.173 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCC-CCCc--CCCCCChHHhHHHHHHH-HHHHHcCCEEEEeccc-CccCCCCh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDS-PLQY--SPGSYNEQMFQGLDFVI-SEARKYGIKLVLSMVN-NYDQFGGK 132 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~-~~q~--~~g~~~~~~l~~lD~~i-~~A~~~Gi~vil~l~~-~w~~~gG~ 132 (425)
...++..|+.++++|+|+|=+=+|.|..-. .... -|...=+-.-+.+.++. ....+.|++|.-=+.. .| +..+.
T Consensus 16 ~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf-~lp~~ 94 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAF-DLPKV 94 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhc-cCCCc
Confidence 356889999999999999988667653110 0000 01111122234555655 4455888887643321 11 12221
Q ss_pred hhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe---ccCCCCCCCCChHHHHH
Q 014426 133 KQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWEL---MNEPRCYADPSGKTIQA 209 (425)
Q Consensus 133 ~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL---~NEP~~~~~~~~~~~~~ 209 (425)
+....+......+......-.-+|+.++..++.-+.++.. ..+.|+-|.|+..+--+|+ .++|... .....+..
T Consensus 95 ~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~~--~Kt~~Li~ 171 (294)
T PF14883_consen 95 KRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPADR--QKTRALID 171 (294)
T ss_pred chhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhhH--HHHHHHHH
Confidence 1111111000000000011122688888888877787754 6789999988865555562 1221110 01246778
Q ss_pred HHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCC---C--CccccchhhcCCCCCcEEEEecCCCCCCCCCCchh
Q 014426 210 WITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPN---F--QVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDES 284 (425)
Q Consensus 210 w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~---~--~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~ 284 (425)
+..++++.+|...|... |.- +.|... ..||. | +.-.+| ....|+..+=..|.. ....
T Consensus 172 ft~eL~~~v~~~rp~lk-TAR--Niya~p-----vl~P~se~WfAQnl~~f-----l~~YD~taimAMPym--E~~~--- 233 (294)
T PF14883_consen 172 FTMELAAAVRRYRPDLK-TAR--NIYAEP-----VLNPESEAWFAQNLDDF-----LKAYDYTAIMAMPYM--EQAE--- 233 (294)
T ss_pred HHHHHHHHHHHhCccch-hhh--cccccc-----cCCcchhhHHHHhHHHH-----HHhCCeeheeccchh--cccc---
Confidence 88999999999886543 221 222221 12342 1 111122 234677666555532 1111
Q ss_pred hhHHHHHHHHHHHHHHHhcCC-CcEEEEeccCCCC
Q 014426 285 QTSFLNNWLYNHIQDAQDTLR-KPILLAEFGKSLK 318 (425)
Q Consensus 285 ~~~~~~~~i~~~~~~a~~~~~-kPv~i~EfG~~~~ 318 (425)
--.+|+.+.++..++..+ +-=+|-|+-...-
T Consensus 234 ---~~~~WL~~Lv~~v~~~p~~l~KtvFELQa~dw 265 (294)
T PF14883_consen 234 ---DPEQWLAQLVDAVAARPGGLDKTVFELQAVDW 265 (294)
T ss_pred ---CHHHHHHHHHHHHHhcCCcccceEEEEeccCC
Confidence 135778887777665222 2336777776554
No 132
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=72.35 E-value=20 Score=36.41 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+++++|++.+++.|+..+=+-+.. -++...+.|..++++|++.|.|+++++.
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig~-------------~d~~~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIGS-------------SDSWQPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccc-------------CCcccHHHHHHHHHHHHhcCCEEEEEec
Confidence 45899999999999999987663321 1222357889999999999999999983
No 133
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=72.16 E-value=80 Score=30.96 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
+.+++++.++.+++.++.+==+|+-. .|.. .-..-.+|++.+-....+++.++++|+++++.++.+-..-...+.|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~--~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~ 98 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDI--HYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFL 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEECh--hhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHH
Confidence 35789999999999997766555421 1210 00112467778888889999999999999988754321100001111
Q ss_pred h-----h-hhh-cCCCC-----C---CCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC
Q 014426 137 N-----W-ARG-QGQSI-----S---SDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD 201 (425)
Q Consensus 137 ~-----W-~~~-~g~~~-----~---~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~ 201 (425)
. + .+. .|.+. . ...+ |++|++++.|.+.++.+... .+- -.-|.=+|||....+
T Consensus 99 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~D-ftnp~a~~ww~~~~~~~~~~--------~gv---dg~w~D~~Ep~~~~~ 166 (317)
T cd06600 99 SGMDKGKFCEIESGELFVGKMWPGTTVYPD-FTNPDTREWWAGLFSEWLNS--------QGV---DGIWLDMNEPSDFEK 166 (317)
T ss_pred HHHHCCEEEECCCCCeEEEeecCCCccccC-CCChHHHHHHHHHHHHHhhc--------CCC---ceEEeeCCCCccHHH
Confidence 0 0 000 11110 0 0122 67899999999998887643 222 223666899864311
Q ss_pred CChHHH-HHHHHHHHHHhhccCC-CceEEe
Q 014426 202 PSGKTI-QAWITEMASYVKSIDG-NHLLEA 229 (425)
Q Consensus 202 ~~~~~~-~~w~~~~~~~Ir~~dp-~~lV~~ 229 (425)
- ...+ ..+.+...+.+++..| +++++.
T Consensus 167 ~-hn~y~~~~~~a~~~~~~~~~~~~r~~~~ 195 (317)
T cd06600 167 V-HNLYGLYEAMATAEGFRTSHPRNRIFIL 195 (317)
T ss_pred h-cchhhHHHHHHHHHHHHHhcCCCCceEE
Confidence 0 0011 2344555666776654 344444
No 134
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=29 Score=36.56 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred ECCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc---CCCCCChHHhHHHHHHHH
Q 014426 33 LNGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY---SPGSYNEQMFQGLDFVIS 109 (425)
Q Consensus 33 ~~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~---~~g~~~~~~l~~lD~~i~ 109 (425)
.+|+.-|+.|+--. +. .+|+..+.-+..|+.++++|+++. .+..... +.. ..--|+-+....|..+|+
T Consensus 11 A~g~r~fiCGVvEG---FY-GRPWt~EQRK~LFrrl~~~gl~tY---lYAPKDD--yKHR~~WRElY~vEEa~~L~~Li~ 81 (891)
T KOG3698|consen 11 AVGNRKFICGVVEG---FY-GRPWTPEQRKHLFRRLNQLGLTTY---LYAPKDD--YKHRSLWRELYNVEEATYLRNLIE 81 (891)
T ss_pred ccccceeEEEeecc---cc-CCCCCHHHHHHHHHHHHhccccee---eecccch--hHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36777788888632 21 246666777888999999999955 3222110 000 011267777889999999
Q ss_pred HHHHcCCEEEEecc
Q 014426 110 EARKYGIKLVLSMV 123 (425)
Q Consensus 110 ~A~~~Gi~vil~l~ 123 (425)
+|++++|..+-.+.
T Consensus 82 aAke~~i~F~YAiS 95 (891)
T KOG3698|consen 82 AAKENNINFVYAIS 95 (891)
T ss_pred HHHhcCceEEEEcC
Confidence 99999999887664
No 135
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=70.89 E-value=7.6 Score=34.77 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
.+.+++.++.++.+|+..++++.......... ....--+...+.|+++.+.|+++|+.+.+..+..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPED--DTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTS--SHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCC--CHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 46788999999999999999974310000000 0000112466789999999999999999887654
No 136
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=70.53 E-value=82 Score=29.54 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCC--CCCHHHHHHHHHHHHHHHhccccccc
Q 014426 101 FQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDF--FTNSVVKQYYKNHIKTVLTRINTVTG 178 (425)
Q Consensus 101 l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~f--y~~~~~~~~~~~~~~~l~~R~N~~tg 178 (425)
++.....+..++++|+||++++... .. + ..| ..+++.++.|.+.+..++.+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~-~~--~------------------~~~~~~~~~~~~~~fa~~l~~~v~~------ 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGN-HL--G------------------AGFANNLSDAAAKAYAKAIVDTVDK------ 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCC-CC--C------------------CCccccCCHHHHHHHHHHHHHHHHH------
Confidence 4556778888999999999998532 11 0 011 23566677777777777776
Q ss_pred cccCCCCcEEEEEeccCCCCCC-CCChHHHHHHHHHHHHHhhccCCCceEEeC
Q 014426 179 VAYKDEPTIMAWELMNEPRCYA-DPSGKTIQAWITEMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 179 ~~y~~~p~I~~weL~NEP~~~~-~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G 230 (425)
|.=|---+-||-.+...... ....+.+..+++++.+.+.. .+.++++.
T Consensus 103 --yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~--~~kllt~~ 151 (255)
T cd06542 103 --YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP--TDKLLTID 151 (255)
T ss_pred --hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc--CCcEEEEE
Confidence 55444344566544321110 11234566666666555532 15566664
No 137
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.45 E-value=59 Score=31.66 Aligned_cols=108 Identities=14% Similarity=0.230 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCC--CCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPG--SYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQ 134 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g--~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~ 134 (425)
+.+.+.+.++.+++.|+.+=-+++ |..| +..-| .+|++.|-.+..+++..+++|+++++-+..+-.. ..+.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~i--D~~w---~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~--~s~~ 100 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEI--DDNW---ETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT--DSEN 100 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEe--CCCc---cccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC--CCHH
Confidence 457899999999999976543333 2223 22222 4677778889999999999999999987543211 1111
Q ss_pred hhh------hhhhc-C-CCC--------CCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014426 135 YVN------WARGQ-G-QSI--------SSDDDFFTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 135 y~~------W~~~~-g-~~~--------~~~~~fy~~~~~~~~~~~~~~~l~~R 172 (425)
|.. |.+.. | .+. ...-+ |++|++++.+.+.++.++..
T Consensus 101 ~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~ 153 (303)
T cd06592 101 FREAVEKGYLVSEPSGDIPALTRWWNGTAAVLD-FTNPEAVDWFLSRLKSLQEK 153 (303)
T ss_pred HHhhhhCCeEEECCCCCCCcccceecCCcceEe-CCCHHHHHHHHHHHHHHHHH
Confidence 211 11110 1 110 00112 67899999999999998854
No 138
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=69.35 E-value=24 Score=35.05 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=52.8
Q ss_pred CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHH
Q 014426 34 NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARK 113 (425)
Q Consensus 34 ~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~ 113 (425)
+++.+++.|-+. ..+++.+.+.-+.+|+.|.+++|..+|-+ .++|..|..-..+.|..+.+.+++
T Consensus 91 ~~~~~~IAGPCs---------iEs~e~~~~~A~~lk~~ga~~~r~~~fKp------RTsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 91 GGKPVVIAGPCS---------VESEEQILEIARAVKEAGAQILRGGAFKP------RTSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCceEEEEecCc---------cCCHHHHHHHHHHHHHhchhhccCcEecC------CCCCcccccccHHHHHHHHHHHHH
Confidence 456666777432 12357788888889999999999877632 123333333334566677788999
Q ss_pred cCCEEEEecccC
Q 014426 114 YGIKLVLSMVNN 125 (425)
Q Consensus 114 ~Gi~vil~l~~~ 125 (425)
.||.++-++++.
T Consensus 156 ~Gl~v~tev~d~ 167 (335)
T PRK08673 156 TGLPIVTEVMDP 167 (335)
T ss_pred cCCcEEEeeCCH
Confidence 999999998764
No 139
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=68.71 E-value=1.3e+02 Score=30.15 Aligned_cols=203 Identities=14% Similarity=0.146 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccC
Q 014426 103 GLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYK 182 (425)
Q Consensus 103 ~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~ 182 (425)
.+..=|+-|+.+||||+|.|-..-+ .| .|-.++++.......|..+..-. -.-+++.
T Consensus 91 qi~~di~~CQS~GiKVlLSLGG~~G------nY---------------s~~~d~dA~~fA~~LWn~Fg~G~--~S~RPfg 147 (568)
T KOG4701|consen 91 QIETDIQVCQSNGIKVLLSLGGYNG------NY---------------SLNNDDDATNFAFQLWNIFGSGE--DSYRPFG 147 (568)
T ss_pred hhhhHHHHHHhcCeEEEEeccCccc------ce---------------eeccchhHHHHHHHHHHHhcCCc--cccCccc
Confidence 4556689999999999999843211 11 12223444444444455544331 1122343
Q ss_pred CCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCC
Q 014426 183 DEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIP 262 (425)
Q Consensus 183 ~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~ 262 (425)
+. -|-+++.-=|-... ..+.+..+++ ..+=+.+|++....+.+. +. .|.-..| ..+...
T Consensus 148 ~A-VvDGfDF~IE~g~~-----~~ysaLA~~L-~~~Fa~~~r~yYLsaAPQ---CP-------~PD~~~G----~aL~~~ 206 (568)
T KOG4701|consen 148 KA-VVDGFDFEIEKGTN-----TAYSALAKRL-LEIFASDPRRYYLSAAPQ---CP-------VPDHTLG----KALSEN 206 (568)
T ss_pred ch-hccceeeeeecCCc-----chHHHHHHHH-HHHHccCCceEEeccCCC---CC-------CCchhhh----hhhhcc
Confidence 31 12233332222221 1122332222 223345777766655321 11 1210111 123456
Q ss_pred CCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCC-CCchhhhHHHHHHHHHHHHHhh
Q 014426 263 GIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPILLAEFGKSLKT-SGANQRDQLFDTVYSAIYLSAR 341 (425)
Q Consensus 263 ~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~-~~~~~r~~~~~~~~~~~~~~~~ 341 (425)
.+||+.+.+|.......+....+ ..+..|+.-....+.+ -+..+++|==|...-. .|+---+...++++..+.++
T Consensus 207 ~fDf~~IQFYNN~~CS~SsG~~Q-~~fDsW~~ya~~~a~n-Kn~~lFLGLPg~~~AAGSGYIsp~~Lt~~~l~~~a~S-- 282 (568)
T KOG4701|consen 207 SFDFLSIQFYNNSTCSGSSGSRQ-STFDAWVEYAEDSAYN-KNTSLFLGLPGHQNAAGSGYISPKNLTRDLLNYKANS-- 282 (568)
T ss_pred ccceEEEEeecCCCcccccCccc-ccHHHHHHHHhhhccc-ccceEEeeccCCcccccCCccCchHHHHHHHHhhhhc--
Confidence 79999999997654433321111 2234555433223322 2335777666654432 23322233444455444332
Q ss_pred cCCCcccccccccc
Q 014426 342 SGGAAVGGMFWQLF 355 (425)
Q Consensus 342 ~~~~~~G~~~W~~~ 355 (425)
.-..|.+.|.-.
T Consensus 283 --~~fGGv~LWd~s 294 (568)
T KOG4701|consen 283 --TLFGGVTLWDTS 294 (568)
T ss_pred --cccccEEEeech
Confidence 346678899764
No 140
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.83 E-value=38 Score=32.78 Aligned_cols=129 Identities=15% Similarity=0.176 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCC------c--CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccC
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQ------Y--SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQ 128 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q------~--~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~ 128 (425)
+.+++++.++.+++.|+.+==+++ |..|..-. . ..-.+|++.+-....+++++++.|+++++.++-.-..
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~ 100 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGI 100 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 357899999999999976544433 11121100 0 1124678888888999999999999999887643111
Q ss_pred CCChhhhhhhhhhcCCCCCC----CCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCC
Q 014426 129 FGGKKQYVNWARGQGQSISS----DDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCY 199 (425)
Q Consensus 129 ~gG~~~y~~W~~~~g~~~~~----~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~ 199 (425)
-.....|.......+..... .-+ +++|++++.|.+.++..+.. ++ .-.-|.=+|||...
T Consensus 101 ~~~~~~y~~~~~~~~~~~~~~~~~~~D-~tnp~a~~~w~~~~~~~~~~--------~G---idg~W~D~~E~~~~ 163 (292)
T cd06595 101 RAHEDQYPEMAKALGVDPATEGPILFD-LTNPKFMDAYFDNVHRPLEK--------QG---VDFWWLDWQQGNRT 163 (292)
T ss_pred CCCcHHHHHHHHhcCCCcccCCeEEec-CCCHHHHHHHHHHHHHHHHh--------cC---CcEEEecCCCCccc
Confidence 11223455544333222111 113 57898887665554443332 22 12236668998653
No 141
>PRK14565 triosephosphate isomerase; Provisional
Probab=67.59 E-value=27 Score=32.92 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=63.8
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCC
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQ 144 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~ 144 (425)
...++++|++.+=+ .|++- +-.|+|.. +.+-.=+..|.++||.+|+++-..-. . +.
T Consensus 78 ~~mLkd~G~~~vii-GHSER--------R~~f~Etd-~~V~~Kv~~al~~gl~pIvCiGE~~e------~-----r~--- 133 (237)
T PRK14565 78 AKMLKECGCSYVIL-GHSER--------RSTFHETD-SDIRLKAESAIESGLIPIICVGETLE------D-----RE--- 133 (237)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCcCCcCH-HHHHHHHHHHHHCCCEEEEEcCCCHH------H-----HH---
Confidence 56789999999876 45542 12244421 11222238899999999999843210 0 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCCh-HHHHHHHHHHHHHhhccCC
Q 014426 145 SISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSG-KTIQAWITEMASYVKSIDG 223 (425)
Q Consensus 145 ~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~-~~~~~w~~~~~~~Ir~~dp 223 (425)
.....+...+.++..+.- . .+-|+|| ||-.... ++ ..-.+-++++.+.||+..+
T Consensus 134 ----------~~~~~~~~~~Ql~~~l~~--------~--~~ivIAY----EPvWAIG-tG~~a~~e~i~~~~~~Ir~~~~ 188 (237)
T PRK14565 134 ----------NGMTKDVLLEQCSNCLPK--------H--GEFIIAY----EPVWAIG-GSTIPSNDAIAEAFEIIRSYDS 188 (237)
T ss_pred ----------ccChHHHHHHHHHHHhcC--------C--CCEEEEE----CCHHHhC-CCCCCCHHHHHHHHHHHHHhCC
Confidence 011222233333343332 2 3567777 4543321 11 0112446888899999877
Q ss_pred CceEEeCC
Q 014426 224 NHLLEAGL 231 (425)
Q Consensus 224 ~~lV~~G~ 231 (425)
+..|..|+
T Consensus 189 ~~~IlYGG 196 (237)
T PRK14565 189 KSHIIYGG 196 (237)
T ss_pred CceEEEcC
Confidence 77777764
No 142
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=67.54 E-value=45 Score=33.47 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=55.5
Q ss_pred EEE-CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHH
Q 014426 31 LML-NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVIS 109 (425)
Q Consensus 31 f~~-~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~ 109 (425)
+.+ +|+++++.|-+.- .+.+.+.+.-..+++.|++++|--.+.+ .++|..|-.-.++.+..+-+
T Consensus 112 ~~~g~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~kp------Rtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 112 EVIGDGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFKP------RTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred EEecCCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccCC------CCCCccccCCCHHHHHHHHH
Confidence 444 5677777776421 1346778888889999999999633321 23444454444577778888
Q ss_pred HHHHcCCEEEEecccC
Q 014426 110 EARKYGIKLVLSMVNN 125 (425)
Q Consensus 110 ~A~~~Gi~vil~l~~~ 125 (425)
.|++.||.++-++++.
T Consensus 177 ~~~~~Gl~~~t~v~d~ 192 (360)
T PRK12595 177 VADEYGLAVISEIVNP 192 (360)
T ss_pred HHHHcCCCEEEeeCCH
Confidence 9999999999998764
No 143
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=67.23 E-value=23 Score=38.08 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=41.6
Q ss_pred EEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCE
Q 014426 38 FYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIK 117 (425)
Q Consensus 38 ~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~ 117 (425)
..++|.|+.= + .+.....++..++.+++.|+.++|++-..+ .++.+...++.+++.|..
T Consensus 80 mL~Rg~N~vG--y---~~~~d~vv~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 80 MLLRGQNLLG--Y---RNYADDVVRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKH 138 (596)
T ss_pred EEeccccccc--c---ccCChHHHHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCE
Confidence 3467777521 1 111236788899999999999999975432 144556666777777776
Q ss_pred EEEec
Q 014426 118 LVLSM 122 (425)
Q Consensus 118 vil~l 122 (425)
+...+
T Consensus 139 ~~~~i 143 (596)
T PRK14042 139 AQGAI 143 (596)
T ss_pred EEEEE
Confidence 65553
No 144
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=66.80 E-value=36 Score=31.90 Aligned_cols=82 Identities=21% Similarity=0.427 Sum_probs=53.7
Q ss_pred hHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCC--CHHHHHHHHHHHHHHHhcccc
Q 014426 98 EQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFT--NSVVKQYYKNHIKTVLTRINT 175 (425)
Q Consensus 98 ~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~--~~~~~~~~~~~~~~l~~R~N~ 175 (425)
+..+.-+...|..|++.||++|= | .|.+. +|. |+++++.|..-++..++-
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtIQ-L-------AGYDV-----------------YYE~~d~eT~~rFi~g~~~a~~l--- 143 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTIQ-L-------AGYDV-----------------YYEEADEETRQRFIEGLKWAVEL--- 143 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeEe-e-------cccee-----------------eeccCCHHHHHHHHHHHHHHHHH---
Confidence 46788999999999999999863 2 22222 232 678888888777666542
Q ss_pred ccccccCCC-CcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 014426 176 VTGVAYKDE-PTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDG 223 (425)
Q Consensus 176 ~tg~~y~~~-p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp 223 (425)
+.. .-.++.|+|.-|-.. .+.+|. ...+.++.
T Consensus 144 ------A~~aqV~lAvEiMDtpfm~------sIsk~~----~~~~~I~s 176 (287)
T COG3623 144 ------AARAQVMLAVEIMDTPFMN------SISKWL----KYDKYINS 176 (287)
T ss_pred ------HHhhccEEEeeecccHHHH------HHHHHH----HHHHHhCC
Confidence 222 346789999877664 244443 35566664
No 145
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=66.36 E-value=36 Score=33.75 Aligned_cols=116 Identities=15% Similarity=0.272 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
+.+++++..+.+++.++.+==+|+ |..|.. .-..-.+|++.|-....++++.++.|+++++.++-.-. +|.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~l--Didy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-~g~----- 92 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHV--DVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-YGG----- 92 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEE--cCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee-cCc-----
Confidence 347889999999999965433333 211110 00112356667777789999999999999987754322 110
Q ss_pred hhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCC
Q 014426 137 NWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCY 199 (425)
Q Consensus 137 ~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~ 199 (425)
.|. + + ....+ |++|++++.+.+..+.+.+- |+ -..|.=+|||...
T Consensus 93 ~~~---~-~-~~~pD-ftnp~ar~wW~~~~~~l~~~-----Gv-------~~~W~DmnEp~~~ 137 (332)
T cd06601 93 GLG---S-P-GLYPD-LGRPDVREWWGNQYKYLFDI-----GL-------EFVWQDMTTPAIM 137 (332)
T ss_pred cCC---C-C-ceeeC-CCCHHHHHHHHHHHHHHHhC-----CC-------ceeecCCCCcccc
Confidence 111 0 0 11223 57899999888777766542 11 1248889999864
No 146
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=64.78 E-value=57 Score=32.03 Aligned_cols=126 Identities=14% Similarity=0.197 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcC--CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhh
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYS--PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQ 134 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~--~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~ 134 (425)
+.+++.+.++.+++.|+.+==+++-.+ +-. ... .-.+|++.|-....+|+.++++|+++++.++.+-.. +.+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~--~~~~ 96 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWF--YWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP--ETEN 96 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEech--hhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC--CChh
Confidence 347899999999999866544433211 100 001 123577788888999999999999999876533111 1122
Q ss_pred hhhhhhh-------cCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCC
Q 014426 135 YVNWARG-------QGQS-------ISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCY 199 (425)
Q Consensus 135 y~~W~~~-------~g~~-------~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~ 199 (425)
|..-... .|.. ....-+ |++|++++.|.+.+++.+.. +. .-.-|.=+|||...
T Consensus 97 y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~--------~G---vdg~w~D~~Ep~~~ 163 (319)
T cd06591 97 YKEMDEKGYLIKTDRGPRVTMQFGGNTRFYD-ATNPEAREYYWKQLKKNYYD--------KG---VDAWWLDAAEPEYS 163 (319)
T ss_pred HHHHHHCCEEEEcCCCCeeeeeCCCCccccC-CCCHHHHHHHHHHHHHHhhc--------CC---CcEEEecCCCCCcc
Confidence 2221110 0000 001122 67899999887776654432 22 22347779998753
No 147
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=64.65 E-value=21 Score=34.01 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+.+++.++.++++|++.|+++..... . . .....-+...+.+.++++.|+++||++.+..+.
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~---~-~-~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYL---G-Q-SKEEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCC---C-C-CHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 56788899999999999998643211 0 0 000011345678899999999999999888653
No 148
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=62.36 E-value=1e+02 Score=29.20 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCCh----HHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhh
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNE----QMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQ 134 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~----~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~ 134 (425)
....+.-+.+++.|+.+.-+........ ++ +..++ +.++.+.+.++.|++.|..++. ++.. . . .
T Consensus 52 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~-~l----~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~--~---~-~ 119 (279)
T TIGR00542 52 EQRLALVNAIIETGVRIPSMCLSAHRRF-PL----GSKDKAVRQQGLEIMEKAIQLARDLGIRTIQ-LAGY--D---V-Y 119 (279)
T ss_pred HHHHHHHHHHHHcCCCceeeecCCCccC-cC----CCcCHHHHHHHHHHHHHHHHHHHHhCCCEEE-ecCc--c---c-c
Confidence 4555566667777777665522111000 11 11233 4678899999999999999775 3211 0 0 0
Q ss_pred hhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCC
Q 014426 135 YVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPR 197 (425)
Q Consensus 135 y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~ 197 (425)
+ + -.+++..+.+.+.++.+++. -+..--.++.|..+.|.
T Consensus 120 ~-------~---------~~~~~~~~~~~~~l~~l~~~--------A~~~Gv~l~lE~~~~~~ 158 (279)
T TIGR00542 120 Y-------E---------EHDEETRRRFREGLKEAVEL--------AARAQVTLAVEIMDTPF 158 (279)
T ss_pred c-------C---------cCCHHHHHHHHHHHHHHHHH--------HHHcCCEEEEeeCCCch
Confidence 0 0 01355567777888888876 55555667788665443
No 149
>PLN03244 alpha-amylase; Provisional
Probab=61.58 E-value=1.1e+02 Score=34.13 Aligned_cols=122 Identities=11% Similarity=0.183 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCEEEEecc-cCccC--------CCChh-hhhhhhhhcCC--CCCCCCCCCCCHHHHHHHHHHHHH
Q 014426 101 FQGLDFVISEARKYGIKLVLSMV-NNYDQ--------FGGKK-QYVNWARGQGQ--SISSDDDFFTNSVVKQYYKNHIKT 168 (425)
Q Consensus 101 l~~lD~~i~~A~~~Gi~vil~l~-~~w~~--------~gG~~-~y~~W~~~~g~--~~~~~~~fy~~~~~~~~~~~~~~~ 168 (425)
.+.|.++|++|.++||.|||++. |+... ++|.+ .|-... ..|. .......-|..+++++....-++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~-~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTG-KRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccC-CCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 45688999999999999999975 32111 11111 111000 0000 001112235678999999999999
Q ss_pred HHhccccccccccCCCCcEEEEEeccC---------CCCCCCCChHHHHHHHHHHHHHhhccCCCceE
Q 014426 169 VLTRINTVTGVAYKDEPTIMAWELMNE---------PRCYADPSGKTIQAWITEMASYVKSIDGNHLL 227 (425)
Q Consensus 169 l~~R~N~~tg~~y~~~p~I~~weL~NE---------P~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 227 (425)
.++.-+ +.|..+-.-.+++...-..+ |+... ......+++.+-..|++..|+.+.
T Consensus 519 WleEyh-IDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~---d~dAv~fL~laN~~ih~~~P~~it 582 (872)
T PLN03244 519 WITEYQ-IDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYV---DKDALMYLILANEILHALHPKIIT 582 (872)
T ss_pred HHHHhC-cCcceeecchhheeeccccccccCCccccccccC---CchHHHHHHHHHHHHHHhCCCeEE
Confidence 887521 22322222223333221111 11111 124567788888889999998543
No 150
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=60.75 E-value=42 Score=36.53 Aligned_cols=113 Identities=14% Similarity=0.233 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCC-------CCCCCC-cCC-CCCC----hHHhHHHHHHHHHHHHcCCEEEEecc-c
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDG-------GDSPLQ-YSP-GSYN----EQMFQGLDFVISEARKYGIKLVLSMV-N 124 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~-------~~~~~q-~~~-g~~~----~~~l~~lD~~i~~A~~~Gi~vil~l~-~ 124 (425)
+..+++|..+|.+|.|+|-+...-+- ++.+.- -+| ++|- +.-..-+..+|++|...||-|+|++. +
T Consensus 255 ~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~s 334 (757)
T KOG0470|consen 255 GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHS 334 (757)
T ss_pred hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhh
Confidence 45567799999999999999432121 111100 011 1121 11255788999999999999999975 3
Q ss_pred CccCCCChhhhhhhhhhc-CC-----C-----CCCCCCC-CCCHHHHHHHHHHHHHHHhc
Q 014426 125 NYDQFGGKKQYVNWARGQ-GQ-----S-----ISSDDDF-FTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 125 ~w~~~gG~~~y~~W~~~~-g~-----~-----~~~~~~f-y~~~~~~~~~~~~~~~l~~R 172 (425)
+-.. +-++.+..+-+.. +. + ......| |..+.+++...+-++.-|+.
T Consensus 335 Haa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 335 HAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 2211 1111111111110 00 0 0011111 45688888888888887775
No 151
>PRK12677 xylose isomerase; Provisional
Probab=60.60 E-value=20 Score=36.39 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcC--CEEEEeccc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYG--IKLVLSMVN 124 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~G--i~vil~l~~ 124 (425)
+.+.+-++.++++|++.|.+|.-.++...+.+......-+...+.|+.+.+.|+++| |++.|....
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp 181 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKP 181 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCC
Confidence 347788999999999999998643321111111100011234467778889998855 998888753
No 152
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=58.97 E-value=22 Score=36.66 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-------CCCCCChHH---hHHHHHHHHHHHHcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-------SPGSYNEQM---FQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-------~~g~~~~~~---l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..+.+.|+.|+...+|++..++..+-+. |++. ..|.|++.. -+.+-++|+.|+-+||+|+..+.
T Consensus 198 ~~IkrtLeaMa~nKLNVlHWHivDs~SF-Ple~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 198 KVIKRTLEAMAANKLNVLHWHIVDSQSF-PLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred HHHHHHHHHHHhhhhceeEEEeecCCCC-ccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 6789999999999999999766533222 3321 346666532 25667899999999999999874
No 153
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.79 E-value=41 Score=35.00 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
+.++..++.+++.|+.++|++-..+ ..+.+...++.+++.|..+.+.+
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~ln----------------d~~n~~~ai~~ak~~G~~~~~~i 152 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALN----------------DPRNIQQALRAVKKTGKEAQLCI 152 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCC----------------CHHHHHHHHHHHHHcCCEEEEEE
Confidence 5677788999999999999964322 25778899999999999977665
No 154
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=58.16 E-value=38 Score=32.33 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=52.5
Q ss_pred CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHH
Q 014426 34 NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARK 113 (425)
Q Consensus 34 ~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~ 113 (425)
+|+++++.|-+. ..+.+.+.+..+.+++.|.++.|-.++-+ .++|..|..-..+.|..+-+.|++
T Consensus 23 ~~~~~~IAGpc~---------ie~~~~~~~~A~~lk~~~~k~~r~~~~Kp------Rtsp~s~~g~g~~gl~~l~~~~~~ 87 (260)
T TIGR01361 23 EGSPIVIAGPCS---------VESEEQIMETARFVKEAGAKILRGGAFKP------RTSPYSFQGLGEEGLKLLRRAADE 87 (260)
T ss_pred CCcEEEEEeCCc---------cCCHHHHHHHHHHHHHHHHHhccCceecC------CCCCccccccHHHHHHHHHHHHHH
Confidence 567878888542 11346777888888899999888654422 123333433345667777788999
Q ss_pred cCCEEEEecccC
Q 014426 114 YGIKLVLSMVNN 125 (425)
Q Consensus 114 ~Gi~vil~l~~~ 125 (425)
.||.++.++++.
T Consensus 88 ~Gl~~~t~~~d~ 99 (260)
T TIGR01361 88 HGLPVVTEVMDP 99 (260)
T ss_pred hCCCEEEeeCCh
Confidence 999999998764
No 155
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=56.56 E-value=89 Score=30.34 Aligned_cols=90 Identities=16% Similarity=0.273 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCC
Q 014426 105 DFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE 184 (425)
Q Consensus 105 D~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~ 184 (425)
.+++..|+++|+++++.+.+. .. ++... . ....+..++..++.|.+-+..++++ |+=+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~-~~-~~~~~--~----------~~~~~l~~~~~r~~fi~~iv~~l~~--------~~~D 105 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNL-TN-GNFDS--E----------LAHAVLSNPEARQRLINNILALAKK--------YGYD 105 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecC-CC-CCCCH--H----------HHHHHhcCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 478899999999999998652 21 11100 0 0012355788888888888888877 6544
Q ss_pred CcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccC
Q 014426 185 PTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSID 222 (425)
Q Consensus 185 p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~d 222 (425)
--.+-||-. . .. +.+.+..+++++...+++..
T Consensus 106 GidiDwE~~---~-~~--d~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 106 GVNIDFENV---P-PE--DREAYTQFLRELSDRLHPAG 137 (313)
T ss_pred cEEEecccC---C-HH--HHHHHHHHHHHHHHHhhhcC
Confidence 334445432 1 11 24568888899888887643
No 156
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=55.53 E-value=1.5e+02 Score=30.24 Aligned_cols=125 Identities=22% Similarity=0.363 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCC-hhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGG-KKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG-~~~y~ 136 (425)
.+++.+.++.+++.|+.+==+++-.+ |.. ....-.+|++.+..+..+++.++++|+++++.++-+-..... ...|.
T Consensus 42 ~~~v~~~i~~~~~~~iP~d~~~iD~~--~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~ 118 (441)
T PF01055_consen 42 QDEVREVIDRYRSNGIPLDVIWIDDD--YQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYD 118 (441)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-GG--GSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHH
T ss_pred HHHHHHHHHHHHHcCCCccceecccc--ccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhh
Confidence 57899999999999988665543211 111 011224678888889999999999999999988643221111 11232
Q ss_pred hhhhhcCCCCCC----------------CCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCC
Q 014426 137 NWARGQGQSISS----------------DDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRC 198 (425)
Q Consensus 137 ~W~~~~g~~~~~----------------~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~ 198 (425)
.-.. .+.-+.+ .-+ |++|++++.+.+.++.++.. +.-+ .-|.=+|||..
T Consensus 119 ~~~~-~~~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~--------~Gvd---g~w~D~~E~~~ 183 (441)
T PF01055_consen 119 EAKE-KGYLVKNPDGSPYIGRVWPGKGGFID-FTNPEARDWWKEQLKELLDD--------YGVD---GWWLDFGEPSS 183 (441)
T ss_dssp HHHH-TT-BEBCTTSSB-EEEETTEEEEEB--TTSHHHHHHHHHHHHHHHTT--------ST-S---EEEEESTTTBS
T ss_pred hHhh-cCceeecccCCcccccccCCcccccC-CCChhHHHHHHHHHHHHHhc--------cCCc---eEEeecCCccc
Confidence 2211 1111100 112 67899999999999888765 3322 33777999986
No 157
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=54.52 E-value=40 Score=34.13 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
+.++..++...+.|++++|+|---+ -.+.|...+..++++|..+..++
T Consensus 98 DvVe~Fv~ka~~nGidvfRiFDAlN----------------D~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFRIFDALN----------------DVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred HHHHHHHHHHHhcCCcEEEechhcc----------------chhHHHHHHHHHHhcCceeEEEE
Confidence 6788889999999999999963211 13677899999999999988776
No 158
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=53.39 E-value=1.3e+02 Score=28.59 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=31.9
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHH----HHHcCCEEEEeccc
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISE----ARKYGIKLVLSMVN 124 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~----A~~~Gi~vil~l~~ 124 (425)
...++++|++.+=+ .|++- +-.|+| .|++|.. |.++||.+|+++-.
T Consensus 79 ~~mLkd~G~~~vii-GHSER--------R~~f~E-----td~~v~~K~~~a~~~gl~pIvCiGE 128 (250)
T PRK00042 79 AEMLKDLGVKYVII-GHSER--------RQYFGE-----TDELVNKKVKAALKAGLTPILCVGE 128 (250)
T ss_pred HHHHHHCCCCEEEe-Ccccc--------cCccCc-----CHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56789999999976 55552 122333 3455555 99999999999843
No 159
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=53.15 E-value=1.1e+02 Score=30.18 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVN 137 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~ 137 (425)
.+++.+.++.+++.|+.+==+|+ |..|..- -..-.+|++.+-....+++..+++|+++++-++.+-..-.+.+.|.+
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e 99 (339)
T cd06604 23 EEEVREIADEFRERDIPCDAIYL--DIDYMDG-YRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEE 99 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEE--CchhhCC-CCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHH
Confidence 47889999999999977654443 2112100 01123566667777899999999999999766432110001112211
Q ss_pred hhhh--------cCCCC--------CCCCCCCCCHHHHHHHHHHHHHHH
Q 014426 138 WARG--------QGQSI--------SSDDDFFTNSVVKQYYKNHIKTVL 170 (425)
Q Consensus 138 W~~~--------~g~~~--------~~~~~fy~~~~~~~~~~~~~~~l~ 170 (425)
... .|.+. ....| |++|++++.|.+.++.+.
T Consensus 100 -~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 100 -GLENDYFVKDPDGELYIGRVWPGLSAFPD-FTNPKVREWWGSLYKKFV 146 (339)
T ss_pred -HHHCCeEEECCCCCEEEEEecCCCccccC-CCChHHHHHHHHHHHHHh
Confidence 000 11110 01123 678999999988888766
No 160
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.85 E-value=2e+02 Score=27.00 Aligned_cols=131 Identities=6% Similarity=0.053 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCC-CCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhh
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDS-PLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVN 137 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~-~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~ 137 (425)
..+++.-+.+++.|+.++=+...+.+ ++ .+-..+...-++.++.+++.++.|++.|.+.|+..... .| +.
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~----~~---~~- 117 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNG-YPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAH----AG---YL- 117 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccC-cCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC----CC---CC-
Confidence 34555566677888877654322211 10 00000001123568899999999999999988653210 00 00
Q ss_pred hhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHH
Q 014426 138 WARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASY 217 (425)
Q Consensus 138 W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~ 217 (425)
.+..+..+.+.+.++.++.. -+..--.+++|..+......-.+ ..++...
T Consensus 118 ---------------~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~iE~~~~~~~~~~~t-------~~~~~~l 167 (275)
T PRK09856 118 ---------------TPPNVIWGRLAENLSELCEY--------AENIGMDLILEPLTPYESNVVCN-------ANDVLHA 167 (275)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHH--------HHHcCCEEEEecCCCCcccccCC-------HHHHHHH
Confidence 12344556666777777765 34444456677554222111001 3556677
Q ss_pred hhccC-CCceEE
Q 014426 218 VKSID-GNHLLE 228 (425)
Q Consensus 218 Ir~~d-p~~lV~ 228 (425)
++.++ |+.-+.
T Consensus 168 ~~~~~~~~v~~~ 179 (275)
T PRK09856 168 LALVPSPRLFSM 179 (275)
T ss_pred HHHcCCCcceeE
Confidence 77776 444343
No 161
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=52 Score=35.72 Aligned_cols=39 Identities=28% Similarity=0.768 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeccCCCCCCC
Q 014426 153 FTNSVVKQYYKNHIKTVLTRINTVTGVAYKDE-PTIMAWELMNEPRCYAD 201 (425)
Q Consensus 153 y~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~-p~I~~weL~NEP~~~~~ 201 (425)
|.+|++++.++.... ..+ |..+ |+++.|.=||||.....
T Consensus 477 f~nP~~r~wW~~~fa--fd~--------y~g~t~nl~iWNDMNEPSVFnG 516 (915)
T KOG1066|consen 477 FINPEARKWWKSQFA--FDR--------YEGSTPNLFIWNDMNEPSVFNG 516 (915)
T ss_pred ccCHHHHHHHhhhcc--ccc--------ccCCCCceEEeccCCCccccCC
Confidence 347999999888776 455 6555 77999999999987653
No 162
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=51.63 E-value=56 Score=34.34 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=45.6
Q ss_pred EEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCE
Q 014426 38 FYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIK 117 (425)
Q Consensus 38 ~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~ 117 (425)
..++|.|+.= + .+...+.++.+++..++.|+.++|++...+ .++.+...++.+++.|..
T Consensus 81 mL~Rg~N~vG--y---~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln----------------dv~nl~~ai~~vk~ag~~ 139 (499)
T PRK12330 81 MLLRGQNLLG--Y---RHYEDEVVDRFVEKSAENGMDVFRVFDALN----------------DPRNLEHAMKAVKKVGKH 139 (499)
T ss_pred EEEcccccCC--c---cCcchhHHHHHHHHHHHcCCCEEEEEecCC----------------hHHHHHHHHHHHHHhCCe
Confidence 3467777521 1 111236788999999999999999964322 257888999999999998
Q ss_pred EEEec
Q 014426 118 LVLSM 122 (425)
Q Consensus 118 vil~l 122 (425)
+...+
T Consensus 140 ~~~~i 144 (499)
T PRK12330 140 AQGTI 144 (499)
T ss_pred EEEEE
Confidence 75554
No 163
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=51.63 E-value=51 Score=31.65 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
...+.+++...+.|+..||++.... .++.+...++.|+++|+.+.+.+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~~----------------~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDALN----------------DVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCC----------------hHHHHHHHHHHHHHCCCeEEEEE
Confidence 4578899999999999999954311 16788899999999999988755
No 164
>PLN02692 alpha-galactosidase
Probab=51.40 E-value=45 Score=34.08 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=46.2
Q ss_pred CC-eeEEEEeeccccccccCCCCcchHHHHHHHHHH-----HHcCCCEEEEccccCCCCC--------CCCcCCCCCChH
Q 014426 34 NG-SPFYANGFNAYWLMNTGANPYLKDKVSSVFQQA-----KEHGLSMARTWAFSDGGDS--------PLQYSPGSYNEQ 99 (425)
Q Consensus 34 ~G-~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l-----~~~G~N~vRi~~~~~~~~~--------~~q~~~g~~~~~ 99 (425)
|| -+..+.|.|.|...... -+.+.+.+..+.| +++|.+.|=+ |..|. .+++.|-.|.
T Consensus 50 ngla~tPpmGWnSW~~~~~~---i~E~~i~~~ad~~~~~gl~~~Gy~yv~i----DDgW~~~~rd~~G~~~~d~~kFP-- 120 (412)
T PLN02692 50 NGLGITPPMGWNSWNHFSCK---IDEKMIKETADALVSTGLSKLGYTYVNI----DDCWAEIARDEKGNLVPKKSTFP-- 120 (412)
T ss_pred CcCcCCCcceEEchhhhCcc---cCHHHHHHHHHHHHhccchhcCcEEEEE----cCCcCCCCCCCCCCeeeChhhcC--
Confidence 55 33447888874432222 2346666666655 5567776654 32332 2333333332
Q ss_pred HhHHHHHHHHHHHHcCCEEEEec
Q 014426 100 MFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 100 ~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
..|..+.+.++++|||.=|-.
T Consensus 121 --~G~k~ladyiH~~GLKfGIy~ 141 (412)
T PLN02692 121 --SGIKALADYVHSKGLKLGIYS 141 (412)
T ss_pred --CcHHHHHHHHHHCCCceEEEe
Confidence 458889999999999987755
No 165
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=50.98 E-value=56 Score=33.85 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
..++.+++.+.+.|+..+|++.... + ...+...++.|+++|+.+.+.+
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~ln--------------d--~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALN--------------D--VRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCeEEEEE
Confidence 5678899999999999999965322 1 2357889999999999877665
No 166
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.79 E-value=1.1e+02 Score=29.87 Aligned_cols=124 Identities=11% Similarity=0.141 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc---C--CCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCCh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY---S--PGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGK 132 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~---~--~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~ 132 (425)
.+++.+.++.+++.|+.+==+++- ..|..... . .-.+|++.+-....+|+..+++|+++++.++.+-.. ..
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~lD--~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~--~~ 98 (317)
T cd06598 23 WQEVDDTIKTLREKDFPLDAAILD--LYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK--NS 98 (317)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEe--chhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccC--Cc
Confidence 478899999999999765444331 11211000 1 123577777778899999999999999987633110 11
Q ss_pred hhhhhhhhh--------cCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCC
Q 014426 133 KQYVNWARG--------QGQSI--------SSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEP 196 (425)
Q Consensus 133 ~~y~~W~~~--------~g~~~--------~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP 196 (425)
+.|..=... .+.+. ....+ |++|++++.|.+.++.+.+ .. .-.-|.=+|||
T Consensus 99 ~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~---------~G---vdg~w~D~~Ep 165 (317)
T cd06598 99 KNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLID-WFDPAAQAWFHDNYKKLID---------QG---VTGWWGDLGEP 165 (317)
T ss_pred hhHHHHHhCCCEEEECCCCCEeeeeccCCCccccC-CCCHHHHHHHHHHHHHhhh---------CC---ccEEEecCCCc
Confidence 122110000 00000 01123 4789999999888887632 11 11226668998
Q ss_pred CC
Q 014426 197 RC 198 (425)
Q Consensus 197 ~~ 198 (425)
..
T Consensus 166 ~~ 167 (317)
T cd06598 166 EV 167 (317)
T ss_pred cc
Confidence 53
No 167
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=50.74 E-value=44 Score=31.40 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..+++.++.++++|+++|=+ ++|. + .+++ +..-++|+.++++|++++..+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---S~G~---~-----~i~~---~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---SDGS---M-----EISL---EERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---cCCc---c-----CCCH---HHHHHHHHHHHhCCCeEecccc
Confidence 67899999999999999987 3431 1 1233 3345789999999999998763
No 168
>PTZ00333 triosephosphate isomerase; Provisional
Probab=50.02 E-value=1.2e+02 Score=28.93 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
...++++|++.+=+ .|++- +..|.|+ =+.+.+-+..|.++||.+|+++-.
T Consensus 82 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 82 AEMLKDLGINWTIL-GHSER--------RQYFGET-NEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46789999999976 45552 1123332 245567778999999999999843
No 169
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.97 E-value=35 Score=32.22 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..+++.|+.++++|+++|=+ ++|. + ..++ +..-++|..|++.|++|+..+.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEi---SdGt---i-----~l~~---~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEI---SDGT---I-----DLPE---EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE-----SS---S--------H---HHHHHHHHHHCCTTSEEEEEES
T ss_pred ChHHHHHHHHHHcCCCEEEe---cCCc---e-----eCCH---HHHHHHHHHHHHCCCEEeeccc
Confidence 57899999999999999987 3431 1 1222 3345779999999999998874
No 170
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=49.43 E-value=1.5e+02 Score=25.18 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=39.2
Q ss_pred ChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014426 97 NEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 97 ~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R 172 (425)
+...++.|.-+|+.|++.|+.+++.+.-- -..|..-.|. +.+.++.+.+-++.++++
T Consensus 31 ~SpEy~Dl~l~L~~~k~~g~~~lfVi~Pv---------Ng~wydytG~----------~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 31 KSPEYDDLQLLLDVCKELGIDVLFVIQPV---------NGKWYDYTGL----------SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp S-THHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------HHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHcCCceEEEecCC---------cHHHHHHhCC----------CHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999876421 1345543331 578888899999999988
No 171
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=49.27 E-value=56 Score=33.47 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccC-CC----C---CCCCcCCCCCC---hHHhHHHHHHHHHHH-HcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSD-GG----D---SPLQYSPGSYN---EQMFQGLDFVISEAR-KYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~-~~----~---~~~q~~~g~~~---~~~l~~lD~~i~~A~-~~Gi~vil~l~ 123 (425)
..+++.|+.+++.|.|+|-+--+.. |. + ..++-.|.-+. +..++.+.++|..++ ++||..+.+++
T Consensus 22 ~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 22 SDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred hHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 5899999999999999998843222 11 1 01111222121 234678888888885 79999999986
No 172
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=47.65 E-value=2.5e+02 Score=26.56 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCC--CCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPG--SYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g--~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+++.+.++.+++.|+.+==+++ |..|.. ....- .+|++.+.....+|+.++++|+++++.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~l--D~~~~~-~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVL--DDDYTD-GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEE--Cccccc-CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 457899999999999987544433 222211 01112 46777888899999999999999998663
No 173
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.22 E-value=2.5e+02 Score=26.49 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCC----hHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhh
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN----EQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQ 134 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~----~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~ 134 (425)
...+..-+.+++.|+.+.=+...... .+ .++..+ ++.++.+.+.|+.|++.|...|.. +.. .
T Consensus 57 ~~~~~l~~~l~~~gl~i~~~~~~~~~---~~--~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~~------~-- 122 (283)
T PRK13209 57 EQRLALVNALVETGFRVNSMCLSAHR---RF--PLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AGY------D-- 122 (283)
T ss_pred HHHHHHHHHHHHcCCceeEEeccccc---cc--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CCc------c--
Confidence 55667777778889887654221110 11 122223 346788999999999999997753 211 0
Q ss_pred hhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccC
Q 014426 135 YVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNE 195 (425)
Q Consensus 135 y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NE 195 (425)
.|. + ...+...+.+.+.++.+++. -+.+--.+++|..+.
T Consensus 123 --~~~---~---------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~~~ 161 (283)
T PRK13209 123 --VYY---E---------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIMDT 161 (283)
T ss_pred --ccc---c---------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeecCC
Confidence 000 0 11355566777777887775 444455677776643
No 174
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=47.16 E-value=1.6e+02 Score=29.60 Aligned_cols=183 Identities=15% Similarity=0.161 Sum_probs=92.9
Q ss_pred HHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCCh-hhhhhhhhhcCC--
Q 014426 68 AKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGK-KQYVNWARGQGQ-- 144 (425)
Q Consensus 68 l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~-~~y~~W~~~~g~-- 144 (425)
|.-+|+-++|+....+ |..|+ +.+.++|+.|-++||.-|=+- |...+|. ..+..-+...+.
T Consensus 13 ~s~lgfG~MRlp~~~~----------~~id~---~~~~~~i~~aie~GiNyidTA---~~Yh~g~sE~~lgkaL~~~~Re 76 (391)
T COG1453 13 LSILGFGCMRLPLKEQ----------GSIDE---ENANETIDYAIEHGINYIDTA---WPYHGGESEEFLGKALKDGYRE 76 (391)
T ss_pred cceeccceeecccccC----------CCccH---HHHHHHHHHHHHcCCceEeec---ccccCCCchHHHHHHhhhcccc
Confidence 3447888888865422 44665 456778999999999987664 5444443 222222221110
Q ss_pred --CCCCC-CCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHH--HHHhh
Q 014426 145 --SISSD-DDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEM--ASYVK 219 (425)
Q Consensus 145 --~~~~~-~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~--~~~Ir 219 (425)
.++.. ..+ .-+..+.+++++.+=++| ++-|- |=.+-|-| . .....+|++++ .++++
T Consensus 77 kv~LaTKlp~~--~~~~~edm~r~fneqLek--------l~~Dy-~D~yliH~----l----~~e~~~k~~~~g~~df~~ 137 (391)
T COG1453 77 KVKLATKLPSW--PVKDREDMERIFNEQLEK--------LGTDY-IDYYLIHG----L----NTETWEKIERLGVFDFLE 137 (391)
T ss_pred eEEEEeecCCc--cccCHHHHHHHHHHHHHH--------hCCch-hhhhhhcc----c----cHHHHHHHHccChHHHHH
Confidence 00000 001 112355667777777777 33320 11122211 0 01234555544 66776
Q ss_pred ccCC-CceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHH
Q 014426 220 SIDG-NHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQ 298 (425)
Q Consensus 220 ~~dp-~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~ 298 (425)
+.-. ..+.-+|. +|.+. . .+|......-..||+.+|+|--.|.... ....++
T Consensus 138 kak~eGkIr~~GF-SfHgs--~------------e~~~~iv~a~~~dfvqlq~ny~d~~n~~------------~~~~l~ 190 (391)
T COG1453 138 KAKAEGKIRNAGF-SFHGS--T------------EVFKEIVDAYPWDFVQLQYNYIDQKNQA------------GTEGLK 190 (391)
T ss_pred HHHhcCcEEEeee-cCCCC--H------------HHHHHHHhcCCcceEEeeeeeeccchhc------------ccHHHH
Confidence 6544 44455553 22111 0 1344433334499999999864432110 123455
Q ss_pred HHHhcCCCcEEEEec
Q 014426 299 DAQDTLRKPILLAEF 313 (425)
Q Consensus 299 ~a~~~~~kPv~i~Ef 313 (425)
.|.+ .+++|+|-|=
T Consensus 191 ~A~~-~~~gI~IMeP 204 (391)
T COG1453 191 YAAS-KGLGIFIMEP 204 (391)
T ss_pred HHHh-CCCcEEEEee
Confidence 6665 7999998873
No 175
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=46.66 E-value=91 Score=29.81 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhccCCCceEEeC
Q 014426 205 KTIQAWITEMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 205 ~~~~~w~~~~~~~Ir~~dp~~lV~~G 230 (425)
+...+-++++.++.+++.|+.+|..-
T Consensus 195 ~~a~~~~~~i~~aa~~v~~dii~l~h 220 (268)
T PF09370_consen 195 EEAAERIQEIFDAARAVNPDIIVLCH 220 (268)
T ss_dssp HHHHHHHHHHHHHHHCC-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 56677788999999999999988874
No 176
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=46.18 E-value=1.1e+02 Score=28.41 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=50.7
Q ss_pred CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHH
Q 014426 34 NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARK 113 (425)
Q Consensus 34 ~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~ 113 (425)
+|+.+-+.|+-.-..-. +.-.-+...++.+++.|+.-|.++++.||...+ ...++..|.++.+.+.+
T Consensus 26 ~~~~lHl~GLlSdGGVH-----Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~--------P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 26 NGGRLHLMGLLSDGGVH-----SHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTP--------PKSALKYLEELEEKLAE 92 (223)
T ss_dssp TT--EEEEEEESS-SSS-------HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS---------TTTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecCCCcc-----ccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCC--------cchHHHHHHHHHHHHHh
Confidence 45566667764311100 123677888999999999999999999985421 24578889999999999
Q ss_pred cCCEEEEecc
Q 014426 114 YGIKLVLSMV 123 (425)
Q Consensus 114 ~Gi~vil~l~ 123 (425)
.|+--|-++.
T Consensus 93 ~~~g~IAsv~ 102 (223)
T PF06415_consen 93 IGIGRIASVS 102 (223)
T ss_dssp HTCTEEEEEE
T ss_pred hCCceEEEEe
Confidence 9886677764
No 177
>PLN02429 triosephosphate isomerase
Probab=45.94 E-value=2e+02 Score=28.26 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHH----HHHcCCEEEEeccc
Q 014426 104 LDFVISE----ARKYGIKLVLSMVN 124 (425)
Q Consensus 104 lD~~i~~----A~~~Gi~vil~l~~ 124 (425)
-|++|.. |.++||.+|+++-.
T Consensus 165 td~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 165 KDEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred CHHHHHHHHHHHHHCcCEEEEEcCC
Confidence 3556665 99999999999843
No 178
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=45.91 E-value=77 Score=34.13 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEe
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLS 121 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~ 121 (425)
+.++.+++.+++.|+..+|++...+ + ++.+...++.|+++|+.+...
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~ln--------------d--~~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAMN--------------D--PRNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeCC--------------c--HHHHHHHHHHHHHcCCeEEEE
Confidence 5778899999999999999964211 1 467778888888888875433
No 179
>PRK09989 hypothetical protein; Provisional
Probab=45.47 E-value=52 Score=30.96 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+.+++.++.++.+|+..|+++.... +-...+....+...+.|.++.+.|+++|+.+.+...+
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g~~----~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~ 146 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAGVV----PAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALS 146 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECccCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4577788888999999999753211 0000000111235688899999999999999887644
No 180
>PLN02561 triosephosphate isomerase
Probab=45.47 E-value=2.8e+02 Score=26.41 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=34.6
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
...++++|++.+=+ .|++- +..|+|. =+.+..-+..|.++||.+|+++-
T Consensus 81 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-GHSER--------RALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 56789999999976 45542 2234443 24456667889999999999984
No 181
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=44.37 E-value=2.1e+02 Score=28.21 Aligned_cols=108 Identities=18% Similarity=0.344 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCC--EEEEecccCccCCCChhhhhh-----hhhhcC-CCCCCCCCCCCCHHHHHHHHHHHHHHHhcccc
Q 014426 104 LDFVISEARKYGI--KLVLSMVNNYDQFGGKKQYVN-----WARGQG-QSISSDDDFFTNSVVKQYYKNHIKTVLTRINT 175 (425)
Q Consensus 104 lD~~i~~A~~~Gi--~vil~l~~~w~~~gG~~~y~~-----W~~~~g-~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~ 175 (425)
+..++++.++.|+ -|++.|.-++..+ ....|.+ +....+ ..+..-..||++|..++++.+.++.-++.
T Consensus 104 i~~~v~~l~~~gv~~iv~~pLyPqyS~s-Tt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~--- 179 (320)
T COG0276 104 IEEAVEELKKDGVERIVVLPLYPQYSSS-TTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAK--- 179 (320)
T ss_pred HHHHHHHHHHcCCCeEEEEECCcccccc-cHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHh---
Confidence 3578899999999 4555554333221 1112222 111111 12334467899999999988888887766
Q ss_pred ccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 014426 176 VTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSI 221 (425)
Q Consensus 176 ~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~ 221 (425)
+.-++.++.+.---=|....+ .|+.+..++++.+..|++.
T Consensus 180 -----~~~~~~~llfSaHglP~~~~~-~GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 180 -----HPRDDDVLLFSAHGLPKRYID-EGDPYPQQCQETTRLIAEA 219 (320)
T ss_pred -----cCCCCeEEEEecCCCchhhhh-cCCchHHHHHHHHHHHHHH
Confidence 432345554555444443322 2567888889888888873
No 182
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.82 E-value=2.5e+02 Score=28.10 Aligned_cols=87 Identities=11% Similarity=0.207 Sum_probs=56.2
Q ss_pred EEEeC--CeEEE-CCee-EEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChH
Q 014426 24 ITAKG--VHLML-NGSP-FYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQ 99 (425)
Q Consensus 24 v~v~g--~~f~~-~G~p-~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~ 99 (425)
+.++. +.+.+ ++++ +.+.|=+. -.+++.+.+.-+.+++.|++.+|--.|-+ .++|..|-.-
T Consensus 85 v~v~~~~~~v~iGg~~~l~vIAGPCs---------IEs~eq~l~~A~~lk~~g~~~~r~g~~kp------Rtsp~sf~G~ 149 (352)
T PRK13396 85 VVVPTPNGPVPFGENHPVVVVAGPCS---------VENEEMIVETAKRVKAAGAKFLRGGAYKP------RTSPYAFQGH 149 (352)
T ss_pred EEEecCcCCeEecCCCeEEEEEeCCc---------ccCHHHHHHHHHHHHHcCCCEEEeeeecC------CCCCcccCCc
Confidence 55542 23444 4564 56777432 12357788888899999999999644321 1234444333
Q ss_pred HhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 100 MFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 100 ~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
.-+.|+.+-+.+++.||.++-++++.
T Consensus 150 g~~gl~~L~~~~~e~Gl~~~tev~d~ 175 (352)
T PRK13396 150 GESALELLAAAREATGLGIITEVMDA 175 (352)
T ss_pred hHHHHHHHHHHHHHcCCcEEEeeCCH
Confidence 45566666788999999999998754
No 183
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=43.78 E-value=64 Score=31.07 Aligned_cols=50 Identities=14% Similarity=0.328 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
.++.|+.++++|+.-|-+ -|-+ .-++..++.++++++.|.+|.|. |++|.
T Consensus 108 ~~~~f~~~~~~Gv~GvKi-dF~~-----------~d~Q~~v~~y~~i~~~AA~~~Lm--vnfHg 157 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKI-DFMD-----------RDDQEMVNWYEDILEDAAEYKLM--VNFHG 157 (273)
T ss_dssp HHHHHHHHHHCTEEEEEE-E--S-----------STSHHHHHHHHHHHHHHHHTT-E--EEETT
T ss_pred HHHHHHHHHHcCCCEEee-CcCC-----------CCCHHHHHHHHHHHHHHHHcCcE--EEecC
Confidence 467777777777777776 2211 14678899999999999999764 56664
No 184
>PRK14567 triosephosphate isomerase; Provisional
Probab=42.80 E-value=2.1e+02 Score=27.22 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=33.4
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
-..++++|++.+=+ .|++- +..|.|. =+.+..-+..|.++||.+|+++-
T Consensus 78 ~~mLkd~G~~yvii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-GHSER--------RSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 46789999999976 45542 1124332 12344667889999999999984
No 185
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=41.13 E-value=3.5e+02 Score=26.34 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 014426 102 QGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 102 ~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R 172 (425)
..+..-|..++++|++|+|.+-. |. + .....++..++.|.+.+..++..
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-~~---------------~------~~~~~~~~~~~~fa~sl~~~~~~ 108 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-AN---------------G------HVDLNHTAQEDNFVDSIVAIIKE 108 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-CC---------------C------ccccCCHHHHHHHHHHHHHHHHH
Confidence 45567788999999999999732 11 0 00134566777777777777776
No 186
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=40.46 E-value=67 Score=32.52 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHc--CCEEEEeccc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKY--GIKLVLSMVN 124 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~--Gi~vil~l~~ 124 (425)
...++-++.++++|+.+|-+|.-..+.....+......-+...+.|..+.+.|+++ ||++.|...+
T Consensus 115 ~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p 182 (382)
T TIGR02631 115 RKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKP 182 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 34577789999999999988753222100000000001123556778888888886 5998888754
No 187
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=40.28 E-value=3.1e+02 Score=25.56 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=55.1
Q ss_pred hHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Q 014426 98 EQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177 (425)
Q Consensus 98 ~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~t 177 (425)
+...+.++++++.|++.|...|..+.. ..+ .. ++.++..+.+.+.++.++..
T Consensus 81 ~~~~~~~~~~i~~a~~lga~~i~~~~g------~~~----------------~~-~~~~~~~~~~~~~l~~l~~~----- 132 (258)
T PRK09997 81 EEFRDGVAAAIRYARALGNKKINCLVG------KTP----------------AG-FSSEQIHATLVENLRYAANM----- 132 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCC------CCC----------------CC-CCHHHHHHHHHHHHHHHHHH-----
Confidence 445688999999999999997765321 100 00 22345566777777787776
Q ss_pred ccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCc
Q 014426 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNH 225 (425)
Q Consensus 178 g~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 225 (425)
.++..-.+++|..|-+..... ...=.+++.+.|+++++..
T Consensus 133 ---a~~~Gv~l~lE~~n~~~~~~~-----~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09997 133 ---LMKEDILLLIEPINHFDIPGF-----HLTGTRQALKLIDDVGCCN 172 (258)
T ss_pred ---HHHcCCEEEEEeCCCcCCCCC-----ccCCHHHHHHHHHHhCCCC
Confidence 555666788888876432110 0011244455667777544
No 188
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.09 E-value=61 Score=30.98 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
.++++.+.+.|+..||+... ...++.+..+++.|+++|+.|.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~----------------~~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFH----------------KHEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecc----------------cccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46788888999999998532 224778889999999999999888753
No 189
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=40.06 E-value=76 Score=29.01 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKL 118 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~v 118 (425)
-.++.-++.++++|.+.|.++-.. | .+.++-|..+.++|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPm~-----------G---l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKFFPMG-----------G---LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE---T-----------T---TTTHHHHHHHHHHHHHCT-EE
T ss_pred ccHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCcee
Confidence 357889999999999999985321 1 234677788899999999998
No 190
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=39.89 E-value=69 Score=28.88 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=30.5
Q ss_pred CCCcEEEe-CCeEEECCeeEEEEeecc-----------ccccccCCCCcchHHHHHHHHHHHHcCCCE
Q 014426 20 DDGFITAK-GVHLMLNGSPFYANGFNA-----------YWLMNTGANPYLKDKVSSVFQQAKEHGLSM 75 (425)
Q Consensus 20 ~~~fv~v~-g~~f~~~G~p~~~~G~N~-----------~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~ 75 (425)
+.+.|+++ .+.++++|..+....++. +|..... | .+.-.-.|+.|++.|+..
T Consensus 28 ~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~--~--c~~e~P~l~~l~~~~~~~ 91 (184)
T TIGR01626 28 SVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTS--A--KEXNASLIDAIKAAKFPP 91 (184)
T ss_pred cCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCC--h--hhccchHHHHHHHcCCCc
Confidence 34568876 477888887777777764 2322221 1 122234566677777765
No 191
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=39.58 E-value=3.8e+02 Score=29.94 Aligned_cols=156 Identities=19% Similarity=0.269 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHcCC--CEEEEcc-ccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhh
Q 014426 58 KDKVSSVFQQAKEHGL--SMARTWA-FSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQ 134 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~--N~vRi~~-~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~ 134 (425)
.+.+.+.++.+++..+ .++++=. +....|.. -.+|+..|-..+.+++..++.||++++-+.-.-.. -.+.
T Consensus 279 e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~~~~~-----F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~--d~~~ 351 (772)
T COG1501 279 EDEVLEFIDEMRERDIPLDVFVLDIDFWMDNWGD-----FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQ--DSPL 351 (772)
T ss_pred HHHHHHHHhhcccccCcceEEEEeehhhhccccc-----eEECcccCCCHHHHHHHHHhcCceEEEEecccccc--CCch
Confidence 5677777888877664 4454411 11111211 24677777778899999999999999877422100 0011
Q ss_pred hhhhhhhcCCCC----------------CCCCCCCCCHHHHHHHHH-HHHHHHhccccccccccCCCCcEEEEEeccCCC
Q 014426 135 YVNWARGQGQSI----------------SSDDDFFTNSVVKQYYKN-HIKTVLTRINTVTGVAYKDEPTIMAWELMNEPR 197 (425)
Q Consensus 135 y~~W~~~~g~~~----------------~~~~~fy~~~~~~~~~~~-~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~ 197 (425)
|.. +...|--+ ...-+ |++|++++.|.+ ..+.++. -.-..-|.=+|||.
T Consensus 352 ~~e-~~~~Gy~~k~~~g~~~~~~~w~~~~a~~D-Ftnp~~r~Ww~~~~~~~l~d------------~Gv~g~W~D~nEp~ 417 (772)
T COG1501 352 FKE-AIEKGYFVKDPDGEIYQADFWPGNSAFPD-FTNPDAREWWASDKKKNLLD------------LGVDGFWNDMNEPE 417 (772)
T ss_pred HHH-HHHCCeEEECCCCCEeeecccCCcccccC-CCCHHHHHHHHHHHHhHHHh------------cCccEEEccCCCCc
Confidence 110 11111000 11122 678999999985 3344444 22233477799998
Q ss_pred CCCCC------ChHHH-----HHHHHHHHHHhhccCC-CceEEeCCCCc
Q 014426 198 CYADP------SGKTI-----QAWITEMASYVKSIDG-NHLLEAGLEGF 234 (425)
Q Consensus 198 ~~~~~------~~~~~-----~~w~~~~~~~Ir~~dp-~~lV~~G~~g~ 234 (425)
..... ++..+ .-+.+...+++|+.+| .+++...-.++
T Consensus 418 ~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~ 466 (772)
T COG1501 418 PFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGY 466 (772)
T ss_pred cccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 76321 12222 2345667888999976 45555543333
No 192
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=39.42 E-value=40 Score=32.18 Aligned_cols=60 Identities=17% Similarity=0.040 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 63 SVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 63 ~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
++++.+.+.|+..||+++-... .-.+..-+.=-++.++.+.+++..|+++|++|.+.+-+
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~--~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSP--FLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5688888899999999652110 00011111112567889999999999999999988743
No 193
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.38 E-value=1.1e+02 Score=32.95 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
+.++.+++.+.+.|+..+|++.... + .+.+...++.|+++|+.+...+
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~ln--------------d--~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALN--------------D--PRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCEEEEEE
Confidence 5688899999999999999975322 1 3578888999999999888765
No 194
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=38.66 E-value=2.7e+02 Score=26.92 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCC-CCCCCChHHHHHHHHHHHHHhhccCCCceEEe
Q 014426 154 TNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPR-CYADPSGKTIQAWITEMASYVKSIDGNHLLEA 229 (425)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~-~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 229 (425)
=+|+-++..+.+++++... -|.|+ |=| .|=+|.-.=+-. .......+...+|+.++++++|...|. ++.+
T Consensus 120 W~~eWkdii~~~l~rL~d~--GfdGv-yLD--~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~-~~Vi 190 (300)
T COG2342 120 WEPEWKDIIRSYLDRLIDQ--GFDGV-YLD--VVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPL-FRVI 190 (300)
T ss_pred cCHHHHHHHHHHHHHHHHc--cCceE-EEe--eechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCc-EEEE
Confidence 3588888888888888875 22222 111 121220000000 000112357788999999999999999 4444
No 195
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=38.44 E-value=89 Score=29.47 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
+..++..++....+|+..|-+..-. ++.......+-....+.|.++.+.+.+.||+++|...|.
T Consensus 84 r~~v~~a~~ya~aLg~~~vh~mag~----~p~~~~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~ 147 (260)
T COG3622 84 RLGVALAIEYATALGCKQVHCLAGI----PPEGVDTEAMWATFVENLRYAADLLAAEGIRLLIEPLNL 147 (260)
T ss_pred HhHHHHHHHHHHHhCCCceeeeecC----CCCCccHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCC
Confidence 5678888999999998876653211 111111122333466889999999999999999998876
No 196
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=38.43 E-value=90 Score=22.50 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
..+++.++.+++.|++.+=+ .|- + .+..+..+.+.+++.||++++-+
T Consensus 15 ~~~~~~~~~a~~~g~~~v~i---TDh------------~--~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAI---TDH------------G--NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEE---eeC------------C--cccCHHHHHHHHHHcCCeEEEEE
Confidence 35778899999999998855 221 0 13334567788889999998643
No 197
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.31 E-value=39 Score=32.00 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..||+...... ..++..-+.=.++.++.+..+++.|+++|+.+.+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSD--IHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 45678888999999999653210 0001111112356788999999999999999876653
No 198
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=38.30 E-value=3.3e+02 Score=27.88 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHh---------HHHHHHHHHHHHcCCEEE-EecccCccCC
Q 014426 60 KVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMF---------QGLDFVISEARKYGIKLV-LSMVNNYDQF 129 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l---------~~lD~~i~~A~~~Gi~vi-l~l~~~w~~~ 129 (425)
.-.+.|+.+++.|+| |+-+.- | .||++.+ +....+++.+++.|+.-| +||.-.
T Consensus 135 ~~~e~~~~l~~~GvN--RiSlGV-------Q----sf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg---- 197 (416)
T COG0635 135 VEAEKFKALKEAGVN--RISLGV-------Q----SFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG---- 197 (416)
T ss_pred CCHHHHHHHHHcCCC--EEEecc-------c----cCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC----
Confidence 345679999999999 874321 1 1333333 334577888888888644 666421
Q ss_pred CChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCC--------
Q 014426 130 GGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYAD-------- 201 (425)
Q Consensus 130 gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~-------- 201 (425)
.|. +..+.+++-++.+++ ++ -+.|..|.|.-||.....
T Consensus 198 --------------lP~----------QT~~~~~~~l~~a~~---------l~-pdhis~y~L~~~p~t~~~~~~~~~~~ 243 (416)
T COG0635 198 --------------LPG----------QTLESLKEDLEQALE---------LG-PDHLSLYSLAIEPGTKFAQRKIKGKA 243 (416)
T ss_pred --------------CCC----------CCHHHHHHHHHHHHh---------CC-CCEEEEeeeecCCCchhhhhcccCCC
Confidence 110 123445666667776 33 446889999999986531
Q ss_pred -CChHHHHHHHHHHHHHhhccCC
Q 014426 202 -PSGKTIQAWITEMASYVKSIDG 223 (425)
Q Consensus 202 -~~~~~~~~w~~~~~~~Ir~~dp 223 (425)
|+.+...+.++.+.+.+.+.+=
T Consensus 244 lP~~d~~~~~~~~~~e~L~~~Gy 266 (416)
T COG0635 244 LPDEDEKADMYELVEELLEKAGY 266 (416)
T ss_pred CcChHHHHHHHHHHHHHHHHCCC
Confidence 2334444555666666666553
No 199
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.19 E-value=77 Score=31.49 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..||+..+.. + .+.+.+.++.|+++|+.+.+.+.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~--------------e--~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT--------------E--ADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc--------------h--HHHHHHHHHHHHHCCCeEEEEEE
Confidence 3678999999999999965432 1 24568899999999999998874
No 200
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=38.06 E-value=95 Score=33.44 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
..++.+++.+++.|+..+|++...+ + ++.+...++.|+++|+.+...+
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~ln--------------d--~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALN--------------D--VRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecC--------------h--HHHHHHHHHHHHHcCCEEEEEE
Confidence 5788899999999999999965322 1 4678889999999999988666
No 201
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=37.09 E-value=1.6e+02 Score=28.67 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCC--CCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPG--SYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g--~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
+.+++++.++.+++.|.+.|.++.-.....+. ..++ .+++ +.+..++++|+++|+.+.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~--~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG--DPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC--CCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 35778899999999999999997521110000 0111 2443 456788999999999877654
No 202
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=37.08 E-value=1.3e+02 Score=32.68 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCC--------------------CCCcC------C--CCCChHHhHHHHHHH
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDS--------------------PLQYS------P--GSYNEQMFQGLDFVI 108 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~--------------------~~q~~------~--g~~~~~~l~~lD~~i 108 (425)
+.+.+.+.++.|++.++|++-++...|.+|+ +..|. + |-|++ +.+.+++
T Consensus 276 s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytq---d~~relv 352 (732)
T COG3525 276 STDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQ---DDIRELV 352 (732)
T ss_pred CHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccH---HHHHHHH
Confidence 3578999999999999999998776554441 01111 0 33554 4467889
Q ss_pred HHHHHcCCEEEEecc
Q 014426 109 SEARKYGIKLVLSMV 123 (425)
Q Consensus 109 ~~A~~~Gi~vil~l~ 123 (425)
+.|..++|.||+++.
T Consensus 353 ~yAsar~ItviPeiD 367 (732)
T COG3525 353 AYASARQITVIPEID 367 (732)
T ss_pred HHHhhcCceecCCcC
Confidence 999999999998874
No 203
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=36.82 E-value=27 Score=32.69 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=23.3
Q ss_pred CcchhhHHHHHHHhhhccCCCCcEEEeCCeEEEC
Q 014426 1 MIKKWSLVFFIFLLIQVKADDGFITAKGVHLMLN 34 (425)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~fv~v~g~~f~~~ 34 (425)
|||.+..+++++++++++. .| |..++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~a~-A~-v~l~~TRvIy~ 34 (229)
T PRK15211 3 MMKWGLVSLLSLAVCGQAM-AA-FVLNGTRFIYD 34 (229)
T ss_pred eeehHHHHHHHHHHhHHhe-EE-EEECceEEEEc
Confidence 7888888777776666542 22 88999998873
No 204
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=36.51 E-value=66 Score=34.24 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCC---CcCCCCCCh--HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPL---QYSPGSYNE--QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~---q~~~g~~~~--~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.-+..-++.++++|++++=+.-+....-..+ ......+++ ..++.+..+|+++.+.||++|+++.
T Consensus 40 ~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 40 KGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred ccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 3556779999999999985532211000000 001111222 2467888999999999999999986
No 205
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=36.40 E-value=59 Score=31.96 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 64 VFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 64 ~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
..+.++++|.+.+-+.+..+.. .+-..|+.....+.++.++|++.||..+|.+..+
T Consensus 110 S~~rike~GadavK~Llyy~pD------~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY 165 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYDVD------EPDEINEQKKAYIERIGSECVAEDIPFFLEILTY 165 (324)
T ss_pred hHHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeec
Confidence 3667899999999997765521 1223567788899999999999999999998764
No 206
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=36.29 E-value=92 Score=30.88 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..||+..+.. + .+...+.++.|++.|+.+...+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~--------------e--~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT--------------E--ADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc--------------h--HHHHHHHHHHHHHcCCeEEEEEE
Confidence 4678999999999999965432 1 23567899999999999988774
No 207
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=36.27 E-value=2.5e+02 Score=32.25 Aligned_cols=125 Identities=19% Similarity=0.343 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVN 137 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~ 137 (425)
.+++.+.++.+++.|+.+==+|.-.+ |.. .-..-.+|++.|-....+++..++.|+++++.++-.-..-.|...|..
T Consensus 200 q~eV~eva~~fre~~IP~DvIwlDid--Ym~-g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~e 276 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWMDID--YMD-GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDS 276 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEehh--hhc-CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHh
Confidence 46789999999999977655554222 100 001124677777778899999999999988765422110011111110
Q ss_pred ------hhhh-cCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCC
Q 014426 138 ------WARG-QGQSI--------SSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRC 198 (425)
Q Consensus 138 ------W~~~-~g~~~--------~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~ 198 (425)
|.+. .|.+. ....+ |++|++++.|.+..+.+++. |+ =.-|.=+|||..
T Consensus 277 g~~~~~fvk~~~G~~y~G~vWpG~~~fpD-FTnP~ar~WW~~~~k~l~d~-----GV-------DG~W~DmnEPa~ 339 (978)
T PLN02763 277 GCENDVWIQTADGKPFVGEVWPGPCVFPD-FTNKKTRSWWANLVKDFVSN-----GV-------DGIWNDMNEPAV 339 (978)
T ss_pred HhhcCeeEECCCCCeeEeeecCCCccccC-CCCHHHHHHHHHHHHHHhcC-----CC-------cEEEccCCCCcc
Confidence 1110 11110 01123 67899999888888876642 11 123666888864
No 208
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=36.24 E-value=3.7e+02 Score=25.28 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=46.4
Q ss_pred CCeeEEEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHH
Q 014426 34 NGSPFYANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARK 113 (425)
Q Consensus 34 ~G~p~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~ 113 (425)
.+.++.+..=|.++....+.. + + --...++++|++.+=+ .|++- +..|+|. -+.+..-+..|.+
T Consensus 52 ~~~~i~vgAQnv~~~~~Ga~T-G--e---vS~~mL~d~G~~~vii-GHSER--------R~~f~Et-~~~i~~Kv~~a~~ 115 (242)
T cd00311 52 EGSKIKVGAQNVSPEDSGAFT-G--E---ISAEMLKDAGAKYVII-GHSER--------RQYFGET-DEDVAKKVKAALE 115 (242)
T ss_pred cCCCeEEEecccccccCCCCc-C--c---CCHHHHHHcCCCEEEe-Ccccc--------cCcCCCC-cHHHHHHHHHHHH
Confidence 444555555566654432111 1 1 1256789999999976 45552 1224432 4566777899999
Q ss_pred cCCEEEEeccc
Q 014426 114 YGIKLVLSMVN 124 (425)
Q Consensus 114 ~Gi~vil~l~~ 124 (425)
+||.+|+++-.
T Consensus 116 ~gl~pIvCiGE 126 (242)
T cd00311 116 AGLTPILCVGE 126 (242)
T ss_pred CCCEEEEEeCC
Confidence 99999999843
No 209
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.61 E-value=87 Score=25.71 Aligned_cols=42 Identities=29% Similarity=0.563 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEE
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLV 119 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vi 119 (425)
.+.+.+.++.+.++|+..+ |++. |..+ +++++.|+++||+++
T Consensus 65 ~~~~~~~v~~~~~~g~~~v--~~~~-----------g~~~-------~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAV--WLQP-----------GAES-------EELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEE--EE-T-----------TS---------HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHcCCCEE--EEEc-----------chHH-------HHHHHHHHHcCCEEE
Confidence 4788999999999998844 5432 2233 477899999999986
No 210
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=35.20 E-value=90 Score=29.74 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=44.9
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
-..+|+.|.+.+.+.++.+.. .| +.|+..+..+.++.++|...||-.+|.+..+
T Consensus 117 a~riK~~G~~avK~Lvy~~~D------~~-e~neqk~a~ierigsec~aedi~f~lE~lty 170 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSD------ED-EINEQKLAYIERIGSECHAEDLPFFLEPLTY 170 (306)
T ss_pred HHHHHHhcccceEEEEEEcCC------ch-HHhHHHHHHHHHHHHHhhhcCCceeEeeeec
Confidence 567899999999998776521 22 5788899999999999999999999998765
No 211
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=34.24 E-value=1.3e+02 Score=35.12 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=43.0
Q ss_pred EEEeeccccccccCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEE
Q 014426 39 YANGFNAYWLMNTGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKL 118 (425)
Q Consensus 39 ~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~v 118 (425)
.++|.|.- .+ .+.....++...+.+++.|++++|++-..+ .++.|...++++++.|..+
T Consensus 610 l~Rg~n~v--gy---~~ypd~vv~~f~~~~~~~GidifrifD~lN----------------~~~n~~~~~~~~~~~g~~~ 668 (1143)
T TIGR01235 610 LLRGANGV--GY---TNYPDNVVKYFVKQAAQGGIDIFRVFDSLN----------------WVENMRVGMDAVAEAGKVV 668 (1143)
T ss_pred eecccccc--Cc---cCCCHHHHHHHHHHHHHcCCCEEEECccCc----------------CHHHHHHHHHHHHHcCCEE
Confidence 47888852 11 111236788888889999999999963211 2566777788888888877
Q ss_pred EEec
Q 014426 119 VLSM 122 (425)
Q Consensus 119 il~l 122 (425)
-..+
T Consensus 669 ~~~i 672 (1143)
T TIGR01235 669 EAAI 672 (1143)
T ss_pred EEEE
Confidence 6665
No 212
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=33.55 E-value=57 Score=31.61 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..||++..... . -.+..-+.--++.++.+..+++.|+++|+++...+.
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~-~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASE-A-FSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 46678888899999999753210 0 001111222356788999999999999999987664
No 213
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=33.38 E-value=2.1e+02 Score=27.43 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+.+.+...-...|+.|.+.+|--+|-. ..+|-.|.--..+.|..+-..++++|+.++-.+.+
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKP------RTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~ 118 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKP------RTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD 118 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCC------CCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 357888889999999999999744422 12332233333467778889999999999887754
No 214
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.33 E-value=24 Score=20.82 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=7.0
Q ss_pred CcchhhHHHHHHH-hhhc
Q 014426 1 MIKKWSLVFFIFL-LIQV 17 (425)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~ 17 (425)
|||.+.++++.++ |.+|
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 3454444433333 4334
No 215
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=33.25 E-value=4.9e+02 Score=25.71 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHH-cCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccc
Q 014426 102 QGLDFVISEARK-YGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVA 180 (425)
Q Consensus 102 ~~lD~~i~~A~~-~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~ 180 (425)
+.+.++....++ -+++|++.+.. |.. +. .. ....-.++..++.|.+-+..++++
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiGG-~~~-~~-~~--------------f~~~~~~~~~r~~fi~~iv~~l~~-------- 110 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIGG-WNF-GS-AK--------------FSAMAASPENRKTFIKSAIAFLRK-------- 110 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEcC-CCC-Cc-ch--------------hHHHhCCHHHHHHHHHHHHHHHHH--------
Confidence 445555544444 38999998842 221 00 00 011235778888887777777877
Q ss_pred cCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCC
Q 014426 181 YKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGL 231 (425)
Q Consensus 181 y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~ 231 (425)
|+=+--.+-||--+.... ...+.+.+..+++++.+.+++..++.++++..
T Consensus 111 ~~~DGidiDwE~p~~~~~-~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av 160 (362)
T cd02872 111 YGFDGLDLDWEYPGQRGG-PPEDKENFVTLLKELREAFEPEAPRLLLTAAV 160 (362)
T ss_pred cCCCCeeeeeeccccCCC-CHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEe
Confidence 554444555765432111 11123568888899999988876666777643
No 216
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.17 E-value=94 Score=30.97 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.-..+.++++|.+.|=+.++..... +...++..++.+.++.++|+++||-+++.+.
T Consensus 109 ~~sve~a~~~GAdAVk~lv~~~~d~------~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 109 NWSVRRIKEAGADAVKLLLYYRPDE------DDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred cccHHHHHHcCCCEEEEEEEeCCCc------chHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3446778999999999977654210 1113467888999999999999999999864
No 217
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.90 E-value=1.9e+02 Score=26.64 Aligned_cols=64 Identities=13% Similarity=0.270 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
...++..++.+++.|+..+|++...... ..+..-+.-.++.++.+..+++.|+++|+.+.+.+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~--~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDL--HIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHH--HHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHH--HHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 4567777888899999999996532200 000111222356788999999999999999977664
No 218
>PRK01060 endonuclease IV; Provisional
Probab=32.67 E-value=2.7e+02 Score=26.29 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEE
Q 014426 60 KVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKL 118 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~v 118 (425)
.+++.++.++++|++.|=+++..+..+ .++.++++. ++.+-+.++++||.+
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~-----~~~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQW-----KRKPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCC-----cCCCCCHHH---HHHHHHHHHHcCCCC
Confidence 488899999999999999976432211 122355444 455567788999985
No 219
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=32.56 E-value=72 Score=32.15 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHc-CCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 59 DKVSSVFQQAKEH-GLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 59 ~~~~~~l~~l~~~-G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
..++-||+.+.++ -=|++=+.+.... .|--+.|+++ +|.++++.|+++||.||-|=.-.|..||+.+.++
T Consensus 183 ~~weIDL~~veal~DENT~AivviNP~-----NPcGnVys~~---HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvp 253 (447)
T KOG0259|consen 183 KDWEIDLDGVEALADENTVAIVVINPN-----NPCGNVYSED---HLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVP 253 (447)
T ss_pred ccceechHHHHHhhccCeeEEEEeCCC-----CCCcccccHH---HHHHHHHHHHHhCCeEEehhhcceeecCCCCccc
Confidence 4677778777766 5788877554321 1222468875 4567789999999999988765555677776544
No 220
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.50 E-value=78 Score=31.21 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 63 SVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 63 ~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
-..+.++++|.+.+-+.+..+.. .+-..|+.....+.++-++|++.||..+|.+..+
T Consensus 111 ws~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Y 167 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYDVD------GDEEINDQKQAYIERIGSECTAEDIPFFLELLTY 167 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 45778899999999997765521 1223567788899999999999999999999764
No 221
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=32.24 E-value=1e+02 Score=30.04 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc------CCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY------SPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~------~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+..+++.|+.+++.|+|.+=+=+-.|-+.-.++. .-+.. .-+..+..+|..|++.|||+|--+.
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv--~~f~Di~~~iKkaKe~giY~IARiV 145 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSV--NKFKDIEPVIKKAKENGIYAIARIV 145 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcc--ccccccHHHHHHHHhcCeEEEEEEE
Confidence 4688999999999999998763322211101111 11112 2366788999999999999996654
No 222
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.13 E-value=92 Score=28.85 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIK 117 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~ 117 (425)
-.++..++.++++|.+.|.++-.. | .+.++-|..+-++|.++|++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~-----------G---l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG-----------G---LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCCc
Confidence 457889999999999999985321 1 23466677888899999987
No 223
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=32.08 E-value=80 Score=31.05 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 64 VFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 64 ~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
..+.++++|.+.+-+.+..+.. .+-..|+.....+.++-++|++.||..+|.+..+
T Consensus 111 s~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~ec~a~dipf~lE~ltY 166 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYDVD------DAEEINIQKKAYIERIGSECVAEDIPFFLEVLTY 166 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeCCC------CChHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 3677899999999997765521 1123567788899999999999999999999764
No 224
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=31.78 E-value=76 Score=27.64 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=36.9
Q ss_pred CCCCcEEEeC-CeEEECCeeEEEEeeccccccc-------cCCCCcchHHHHHHHHHHHHcCCCEEEE
Q 014426 19 ADDGFITAKG-VHLMLNGSPFYANGFNAYWLMN-------TGANPYLKDKVSSVFQQAKEHGLSMART 78 (425)
Q Consensus 19 ~~~~fv~v~g-~~f~~~G~p~~~~G~N~~~~~~-------~~~~~~~~~~~~~~l~~l~~~G~N~vRi 78 (425)
.+-+.|.|.. +.|+++++.|.+.-.|...+.- .+.+.+.++.-...++.+++..++..|.
T Consensus 27 q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~Y 94 (184)
T COG3054 27 QRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRY 94 (184)
T ss_pred CcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHc
Confidence 4556677764 7799999888777776533321 0111123455566777788887776664
No 225
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.54 E-value=1.2e+02 Score=28.86 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..+|+..... ....+..+++.|+++|+.+.+.+.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s----------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCT----------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechh----------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3678888899999999954321 124567899999999999988874
No 226
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=31.49 E-value=74 Score=31.24 Aligned_cols=94 Identities=12% Similarity=0.265 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCC-CHHHHHHHHHHHHHHHhccccccccccCCC
Q 014426 106 FVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFT-NSVVKQYYKNHIKTVLTRINTVTGVAYKDE 184 (425)
Q Consensus 106 ~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~-~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~ 184 (425)
..++.|+++|++|+=++.-.|+ ++ ..|... +.. +++-...+.+-+-+|++. |+=|
T Consensus 46 ~widaAHrnGV~vLGTiife~~--~~----~~~~~~----------ll~~~~~g~~~~A~kLi~ia~~--------yGFD 101 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWG--GG----AEWCEE----------LLEKDEDGSFPYADKLIEIAKY--------YGFD 101 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--------HHHHHH----------HT---TTS--HHHHHHHHHHHH--------HT--
T ss_pred hhHHHHHhcCceEEEEEEecCC--ch----HHHHHH----------HHcCCcccccHHHHHHHHHHHH--------cCCC
Confidence 4689999999999988876553 22 233321 111 222223345566677776 7655
Q ss_pred CcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEE
Q 014426 185 PTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLE 228 (425)
Q Consensus 185 p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 228 (425)
+|-|-=|-........+.+..+++++.+..++ .|+..|.
T Consensus 102 ----Gw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 102 ----GWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp ----EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred ----ceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 44444443332111357899999999999999 7776665
No 227
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.40 E-value=4.4e+02 Score=24.69 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCC----hHHhHHHHHHHHHHHHcCCEEEEe
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN----EQMFQGLDFVISEARKYGIKLVLS 121 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~----~~~l~~lD~~i~~A~~~Gi~vil~ 121 (425)
....+.-+.+++.|+.+.=+.... ...+ ..+..+ ++.++.+.++|+.|++.|...+..
T Consensus 52 ~~~~~l~~~l~~~Gl~i~~~~~~~---~~~~--~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 52 EERLSLVKAIYETGVRIPSMCLSG---HRRF--PFGSRDPATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHcCCCceEEeccc---ccCc--CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456666777888888766542110 0000 011123 356788999999999999999863
No 228
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.28 E-value=58 Score=32.70 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..||++..... .-.+..-+.-.++.++.+..+++.|+++|+++.+.+.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd--~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSP--IHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 46788889999999999653210 0001111112356788899999999999999988764
No 229
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=30.84 E-value=1.3e+02 Score=33.04 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEE-cccc--CCCCCCC-CcCCCCCChH--HhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 58 KDKVSSVFQQAKEHGLSMART-WAFS--DGGDSPL-QYSPGSYNEQ--MFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi-~~~~--~~~~~~~-q~~~g~~~~~--~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
-++....++.++++|+..+=+ ++|- .|+..-+ -..|.+.|++ ..+.|.+++.+++++||-+|+++.-
T Consensus 18 F~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVP 90 (889)
T COG3280 18 FADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVP 90 (889)
T ss_pred HHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecc
Confidence 367889999999999997755 2221 1110000 0112234443 5677889999999999999999863
No 230
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=30.72 E-value=4.9e+02 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCEEEEecc
Q 014426 102 QGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 102 ~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..|-.-|..|++.|+||+|++-
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEcc
Confidence 4677889999999999999983
No 231
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=29.86 E-value=52 Score=22.94 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=14.6
Q ss_pred HHHHHHHhhccCCCceEEeC
Q 014426 211 ITEMASYVKSIDGNHLLEAG 230 (425)
Q Consensus 211 ~~~~~~~Ir~~dp~~lV~~G 230 (425)
+.++.+.|+++||+..|++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHHhCCCEEEEEE
Confidence 36777899999999999985
No 232
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=29.28 E-value=1.2e+02 Score=32.46 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCC---------hHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYN---------EQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~---------~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
+.+..++.++.|+++-+|.+-++-.......|+....+.++ +-..+.+...|+.|+++||+++.--
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn 190 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYN 190 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence 35788999999999999999984211000112222221111 1245788999999999999999753
No 233
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=29.25 E-value=1.2e+02 Score=29.34 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCC-CcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPL-QYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~-q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.+++++.++.+++.|+.+==+++ |..|..- .-..-.+|++.|-....++++++++|+++++-++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~l--D~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHL--DCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEE--ecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 347899999999999977643332 2222110 0012246777777889999999999999998775
No 234
>PRK10449 heat-inducible protein; Provisional
Probab=29.14 E-value=53 Score=28.12 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=19.9
Q ss_pred CcchhhHHHHHHHhhhccCCCC----cEEEeCCeEE---ECCeeEE
Q 014426 1 MIKKWSLVFFIFLLIQVKADDG----FITAKGVHLM---LNGSPFY 39 (425)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----fv~v~g~~f~---~~G~p~~ 39 (425)
|+|.+..+++.++|.+|+.... .....+++.. ++|+|+.
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~~~~~~~~~L~~~~W~L~~i~G~~~~ 46 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGKISVTPEQLQHHRFVLESVNGKPVT 46 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCCcCHHHcCCceEEEEEECCEEcC
Confidence 5665544444555555554322 1234565543 3788774
No 235
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=28.81 E-value=1.8e+02 Score=26.97 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCcc
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYD 127 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~ 127 (425)
.+.+.+.|.+.+=+-...+ ..-+..++..|+++|+.+.++|.+.|+
T Consensus 73 ~~ma~~aGAd~~tV~g~A~-----------------~~TI~~~i~~A~~~~~~v~iDl~~~~~ 118 (217)
T COG0269 73 ARMAFEAGADWVTVLGAAD-----------------DATIKKAIKVAKEYGKEVQIDLIGVWD 118 (217)
T ss_pred HHHHHHcCCCEEEEEecCC-----------------HHHHHHHHHHHHHcCCeEEEEeecCCC
Confidence 4555788999887743322 345678899999999999999988764
No 236
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.68 E-value=64 Score=32.36 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..||++...... -++..-+.=-++.++.+.++++.|+++|+.+.+.+.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~--~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDL--QIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHH--HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 467888889999999996532100 001111111356788899999999999999877654
No 237
>PRK05434 phosphoglyceromutase; Provisional
Probab=27.71 E-value=2.1e+02 Score=30.14 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..-+...++.+++.|++-|++++|.||.+.+ ....+..++++.+.++++|.--|-++.
T Consensus 127 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~--------p~s~~~~i~~l~~~~~~~~~~~iasv~ 184 (507)
T PRK05434 127 IDHLFALLELAKEEGVKKVYVHAFLDGRDTP--------PKSALGYLEELEAKLAELGVGRIASVS 184 (507)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCCCCC--------chhHHHHHHHHHHHHHHhCCeeEEEEe
Confidence 3567788999999999999999999875421 245678888888888888886666664
No 238
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.33 E-value=74 Score=30.70 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+++++.+.+.|++.|++.+.... . -.+..-+.--++.++.+.+++..|+++|+++.+.+.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~-~-h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSL-K-HCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCH-H-HHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 45788899999999999652110 0 0011111223678999999999999999999988854
No 239
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=27.28 E-value=3.3e+02 Score=26.63 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCC-CCCC--cCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGD-SPLQ--YSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~-~~~q--~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
++.|+.|+++|+++ |+.+-.+... ..+. ...| + ..+.+-++++.++++||.+...+.
T Consensus 117 ~e~L~~l~~aG~~~-~v~iG~ES~~d~~L~~~inKg-~---t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 117 EEKLEELRKIGVNV-EVAVGLETANDRIREKSINKG-S---TFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HHHHHHHHHcCCCE-EEEEecCcCCHHHHHHhhCCC-C---CHHHHHHHHHHHHHcCCcEEEEEE
Confidence 56778888889873 3322212110 0110 0111 1 123455888999999999887764
No 240
>PF14881 Tubulin_3: Tubulin domain
Probab=27.23 E-value=3.3e+02 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=23.1
Q ss_pred hHHhHH-HHHHHHHHHHc-CCEEEEecccCc
Q 014426 98 EQMFQG-LDFVISEARKY-GIKLVLSMVNNY 126 (425)
Q Consensus 98 ~~~l~~-lD~~i~~A~~~-Gi~vil~l~~~w 126 (425)
++.+++ |..++++|... |+.++.++.+.|
T Consensus 57 ~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gw 87 (180)
T PF14881_consen 57 EDFFDRDLRFFLEECDSLQGFQVLTDVDDGW 87 (180)
T ss_pred hHHHHHHHHHHHHHcccccceEEEecCCCch
Confidence 345664 88899999875 999999998876
No 241
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.84 E-value=88 Score=29.52 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
+.+.+.++.+.++|+..|=+++|+-..|.+-+.+-..+=.-..+.++..++.+.++||+|-+
T Consensus 39 ~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~ 100 (241)
T PRK14842 39 NAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHH 100 (241)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57888999999999999999999764443211000000001224555566777888999864
No 242
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=26.73 E-value=1e+02 Score=28.81 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+++++.+++.|+..||+...... ...+..-+.=.+..++.+...++.|+++|+.+.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE--THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 67899999999999999653210 00000001112347888899999999999999998843
No 243
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=26.73 E-value=2.1e+02 Score=29.38 Aligned_cols=91 Identities=11% Similarity=0.242 Sum_probs=61.3
Q ss_pred HHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEE
Q 014426 109 SEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIM 188 (425)
Q Consensus 109 ~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~ 188 (425)
..|.+||++|+-++..-|.. |+. . . ..|..+++..+.+.+.+.++++. ++=+
T Consensus 118 n~AHrHGV~vlGTFItEw~e-g~~-~-c-------------~~~La~~es~~~~~e~L~~l~~~--------fgFd---- 169 (526)
T KOG2331|consen 118 NTAHRHGVKVLGTFITEWDE-GKA-T-C-------------KEFLATEESVEMTVERLVELARF--------FGFD---- 169 (526)
T ss_pred chhhhcCceeeeeEEEEecc-chh-H-H-------------HHHHccchhHHHHHHHHHHHHHH--------hCCc----
Confidence 67999999999999888753 221 1 0 23445566677778888888877 6655
Q ss_pred EEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEE
Q 014426 189 AWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLE 228 (425)
Q Consensus 189 ~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 228 (425)
+|-+-=|-..... .-+.+..++..+.+..++.-|+-+|.
T Consensus 170 GWLiNiEn~i~~~-~i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 170 GWLINIENKIDLA-KIPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred eEEEEeeeccChh-hCccHHHHHHHHHHHHhhcCCCceEE
Confidence 3444333332210 12357889999999999999998885
No 244
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=25.79 E-value=2.1e+02 Score=26.97 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=55.0
Q ss_pred CCCCcEEEeCCeEEECCeeEEEEeeccc------cccc---cCCCCcchHHHHHHHHHHHHcCCCEEEEccccCCCCCCC
Q 014426 19 ADDGFITAKGVHLMLNGSPFYANGFNAY------WLMN---TGANPYLKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPL 89 (425)
Q Consensus 19 ~~~~fv~v~g~~f~~~G~p~~~~G~N~~------~~~~---~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~ 89 (425)
+....++++|.++.-+..-+...|.-.. .... ..+...+.+++.+.+....+.|-.++|++.-
T Consensus 13 GdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSG-------- 84 (254)
T COG2875 13 GDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSG-------- 84 (254)
T ss_pred CCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecC--------
Confidence 3456799999998777777777886531 1110 0111235678888899999999999999532
Q ss_pred CcCCCCCChHHhHHHHHHHHHHHHcCCEEEEe
Q 014426 90 QYSPGSYNEQMFQGLDFVISEARKYGIKLVLS 121 (425)
Q Consensus 90 q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~ 121 (425)
|+.....+-+-+++.+++||-.-+.
T Consensus 85 -------DpsiYgA~~EQm~~L~~~gI~yevv 109 (254)
T COG2875 85 -------DPSIYGALAEQMRELEALGIPYEVV 109 (254)
T ss_pred -------ChhHHHHHHHHHHHHHHcCCCeEEe
Confidence 2223344445555666666654443
No 245
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.65 E-value=2e+02 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 64 VFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 64 ~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
.++.+.++|.+.|=++.... -..+.++++.|+++|+++++.+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-----------------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-----------------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 47888899999886643211 123568899999999999998755
No 246
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.51 E-value=2.8e+02 Score=26.68 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCC--CCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 57 LKDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSP--GSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 57 ~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~--g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
+.+...+.++.++++|+..+=+ |.+|......+ .......-..|.++++.|++.|+.|+|-.|.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 5688999999999999998876 33343111000 0001111256789999999999999987764
No 247
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=25.32 E-value=81 Score=20.39 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=12.4
Q ss_pred cchhhH--H-HHHHHhhhccCCCCcEEEeC
Q 014426 2 IKKWSL--V-FFIFLLIQVKADDGFITAKG 28 (425)
Q Consensus 2 ~~~~~~--~-~~~~~~~~~~~~~~fv~v~g 28 (425)
||++.. + .+|+++.+..+++|-|.+.|
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~~pG~ViING 30 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPATPGNVIING 30 (36)
T ss_pred CceeHHHHHHHHHHHHhcccCCCCeEEECc
Confidence 666655 2 22332223324456566555
No 248
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=25.26 E-value=6.3e+02 Score=24.46 Aligned_cols=99 Identities=15% Similarity=0.300 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHc-CCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccccccccc
Q 014426 103 GLDFVISEARKY-GIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAY 181 (425)
Q Consensus 103 ~lD~~i~~A~~~-Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y 181 (425)
.+.++....+++ ++++++.+.. |... . .....-.++..++.|.+-+..++++ |
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg-~~~s---~--------------~f~~~~~~~~~r~~fi~~i~~~~~~--------~ 106 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGG-WTES---D--------------NFSSMLSDPASRKKFIDSIVSFLKK--------Y 106 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeC-CCCC---c--------------chhHHHCCHHHHHHHHHHHHHHHHH--------c
Confidence 455556666664 9999998843 2110 0 0012234678888888888888877 5
Q ss_pred CCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhcc---CCCceEEeCC
Q 014426 182 KDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSI---DGNHLLEAGL 231 (425)
Q Consensus 182 ~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~---dp~~lV~~G~ 231 (425)
.=+--.+-||- |.... .+.+.+..+++++.+.+++. .++.+|++..
T Consensus 107 ~~DGidiDwE~---~~~~~-~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 107 GFDGIDIDWEY---PGARG-DDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred CCCeEEECCcC---CCCCc-cHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 43322232442 22210 12456888888888888765 5566777643
No 249
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.07 E-value=96 Score=29.11 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
+.+.+.++.+.++|+..|=+++|+-..|.+-+.+-..+=.-....++..++.+.++||+|-+
T Consensus 34 ~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~ 95 (233)
T PRK14841 34 EVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRI 95 (233)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 57889999999999999999999764443211000000001123455556677888988754
No 250
>PRK11627 hypothetical protein; Provisional
Probab=25.07 E-value=1.1e+02 Score=27.72 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 014426 155 NSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 155 ~~~~~~~~~~~~~~l~~R 172 (425)
+++.....-+.+..++++
T Consensus 159 ~~~ie~~lN~~ls~vl~~ 176 (192)
T PRK11627 159 NKKIADAVNSVLSDVIAD 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777788888887
No 251
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.66 E-value=3.3e+02 Score=29.82 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCC-CCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhh
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSP-LQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYV 136 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~-~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~ 136 (425)
.+.+.+.++.+++.|+.+==+++ |..|.. ..-..-.+|++.|-....+++..++.|+++++-+.-+-.. ..+.|.
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~l--D~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~--~s~~f~ 357 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHF--DCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ--KSPLFK 357 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEE--chhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC--CchHHH
Confidence 45688888999999976432222 111110 0001123566677677889999999999999876532110 111111
Q ss_pred hhhhhc--------CCCC--------CCCCCCCCCHHHHHHHHHHHHHHHh
Q 014426 137 NWARGQ--------GQSI--------SSDDDFFTNSVVKQYYKNHIKTVLT 171 (425)
Q Consensus 137 ~W~~~~--------g~~~--------~~~~~fy~~~~~~~~~~~~~~~l~~ 171 (425)
. .... |.+. ....| |++|++++.|.+.++.++.
T Consensus 358 e-~~~~gy~vk~~~G~~~~~~~W~g~~~~~D-ftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 358 E-GKEKGYLLKRPDGSVWQWDKWQPGMAIVD-FTNPDACKWYADKLKGLLD 406 (665)
T ss_pred H-HHHCCeEEECCCCCEeeeeecCCCceeec-CCCHHHHHHHHHHHHHHHh
Confidence 1 0000 1000 01122 6799999999999988775
No 252
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=24.51 E-value=2e+02 Score=27.21 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=33.5
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 65 FQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 65 l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
...|+++|++.+=+ .|++- +-.|+| .-+.+..-+..|.++||.+|+++-.
T Consensus 77 ~~mL~d~G~~~vii-GHSER--------R~~f~E-td~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-GHSER--------RQYFGE-TDEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp HHHHHHTTESEEEE-SCHHH--------HHHST--BHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHhhCCEEEe-ccccc--------cCcccc-ccHHHHHHHHHHHHCCCEEEEEecc
Confidence 56789999999976 44431 011222 2245667789999999999999854
No 253
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=24.46 E-value=5e+02 Score=22.98 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=65.6
Q ss_pred HHHHHHHHc--CCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccCC
Q 014426 106 FVISEARKY--GIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVTGVAYKD 183 (425)
Q Consensus 106 ~~i~~A~~~--Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~ 183 (425)
..+..++++ |++|++.+...... .....-.++..++.|.+-+..++++ |+=
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~-------------------~~~~~~~~~~~~~~f~~~~~~~v~~--------~~~ 105 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDS-------------------SPFTLASDPASRAAFANSLVSFLKT--------YGF 105 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCC-------------------CCchhhcCHHHHHHHHHHHHHHHHH--------cCC
Confidence 445555665 99999998542100 0002245777888887777788877 554
Q ss_pred CCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCCCceEEeCCCCccCCCCCccccCCCCCCccccchhhcCCCC
Q 014426 184 EPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPG 263 (425)
Q Consensus 184 ~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~ 263 (425)
+---+-||-...... ...+.+..+++++.+.+++. +-++++......... . .+.+.. .....
T Consensus 106 DGidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~~~--~~~ls~a~~~~~~~~-------~----~~~~~~--~l~~~ 167 (210)
T cd00598 106 DGVDIDWEYPGAADN---SDRENFITLLRELRSALGAA--NYLLTIAVPASYFDL-------G----YAYDVP--AIGDY 167 (210)
T ss_pred CceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhccc--CcEEEEEecCChHHh-------h----ccCCHH--HHHhh
Confidence 433444553221111 12356777777777766554 445665432211000 0 001111 12467
Q ss_pred CcEEEEecCC
Q 014426 264 IDFATLHSYP 273 (425)
Q Consensus 264 iD~~s~H~Y~ 273 (425)
+|++.+..|-
T Consensus 168 vD~v~vm~Yd 177 (210)
T cd00598 168 VDFVNVMTYD 177 (210)
T ss_pred CCEEEEeeec
Confidence 8999988884
No 254
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.32 E-value=96 Score=31.28 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..||+++.... .-++..-+.=-++.++.+..+++.|+++|+.|.+++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd--~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSD--IHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 46788888899999998653210 0011111222367889999999999999999888753
No 255
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=24.13 E-value=1e+02 Score=29.46 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 63 SVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 63 ~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..++.+.+.|++.||+...... . -.+...+.=.++.++.+.++++.|+++|+.|.+...
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd-~-~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 140 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWD-L-HVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAE 140 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCH-H-HHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEE
Confidence 5688889999999998542110 0 011112222357788999999999999999887543
No 256
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.04 E-value=1e+02 Score=29.26 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
+.+.+.+..+.++|+..|=+++|+-..|.+-+.+-...-.-..+.+++.++...++|+++-+
T Consensus 51 ~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~ 112 (249)
T PRK14831 51 DALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRF 112 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 57889999999999999999999744443211000000000113445556678889988754
No 257
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=24.03 E-value=2.8e+02 Score=29.23 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..-+...++.+++.|++-|++++|.||.+.+ ....+..|+++.+.+++.|..-|-++.
T Consensus 123 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~--------p~s~~~~~~~l~~~~~~~~~~~iasv~ 180 (501)
T TIGR01307 123 IDHLIALIELAAERGIEKVVLHAFTDGRDTA--------PKSAESYLEQLQAFLKEIGNGRIATIS 180 (501)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCCCCC--------chhHHHHHHHHHHHHHHhCCEEEEEEe
Confidence 3567888999999999999999999875422 234677778888888887876677764
No 258
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.77 E-value=1.5e+02 Score=30.21 Aligned_cols=50 Identities=10% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHh---------HHHHHHHHHHHHcCCE-EEEecc
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMF---------QGLDFVISEARKYGIK-LVLSMV 123 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l---------~~lD~~i~~A~~~Gi~-vil~l~ 123 (425)
-++.++.+++.|+|-|=+ -.+ .++++.+ +...+.++.+++.|+. +-++|.
T Consensus 114 t~e~l~~l~~~Gvnrisl--GvQ-----------S~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI 173 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSL--GVQ-----------AFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLI 173 (400)
T ss_pred CHHHHHHHHHCCCCEEEE--Ecc-----------cCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 357789999999994444 211 1233222 3456788899999998 667774
No 259
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=23.49 E-value=1.9e+02 Score=30.25 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
+.++..++.+.+.|+..+|++... ++ ++.+...++.|+++|+.+...+
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i 142 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDAL--------------ND--IRNLEKSIEVAKKHGAHVQGAI 142 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeC--------------CH--HHHHHHHHHHHHHCCCEEEEEE
Confidence 467777899999999999996532 22 5778899999999999888665
No 260
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=23.45 E-value=1e+02 Score=30.78 Aligned_cols=61 Identities=15% Similarity=-0.001 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
..++++.+.+.|+..|.+++..... -.+..-+.=-++.++.+.++++.|+++|++|...+.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~--h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASES--FSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHH--HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 3477888888999999986522100 011111222367889999999999999999976653
No 261
>PRK10626 hypothetical protein; Provisional
Probab=22.91 E-value=1.1e+02 Score=28.70 Aligned_cols=21 Identities=0% Similarity=-0.043 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 014426 152 FFTNSVVKQYYKNHIKTVLTR 172 (425)
Q Consensus 152 fy~~~~~~~~~~~~~~~l~~R 172 (425)
|+-.....+.++.-++.+++.
T Consensus 142 ~~f~~~~~~~ve~~~~qlv~~ 162 (239)
T PRK10626 142 LTFHHQAIDQVEADGQQLVNQ 162 (239)
T ss_pred eeehHHHHHHHHHHHHHHHHH
Confidence 333444555555556666554
No 262
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=22.80 E-value=4.6e+02 Score=29.24 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc--CCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY--SPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~--~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
...+++..+.+.++|+..==+|.-.| .+. ..-.+|+..+-.+..+++..+++|+++++.++
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~DiD-----yMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliid 372 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVIDID-----YMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIID 372 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeeeehh-----hhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeC
Confidence 36778888889999988444443222 111 11235666666788999999999999999987
No 263
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=22.65 E-value=7.8e+02 Score=24.62 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.+.|+.++++|+|-|-+-+ +...+.....-|... ..+.+.+.++.+++.++.|.++|.
T Consensus 104 ~e~L~~l~~~GvnrislGv--QS~~d~vL~~l~R~~--~~~~~~~ai~~~~~~~~~v~~dli 161 (380)
T PRK09057 104 AGRFRGYRAAGVNRVSLGV--QALNDADLRFLGRLH--SVAEALAAIDLAREIFPRVSFDLI 161 (380)
T ss_pred HHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHhCccEEEEee
Confidence 4889999999999555522 110000100111111 123444677888888888888885
No 264
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.58 E-value=6.1e+02 Score=23.36 Aligned_cols=90 Identities=10% Similarity=0.107 Sum_probs=50.2
Q ss_pred hHHhHHHHHHHHHHHHcCCEEEEecccCccCCCChhhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Q 014426 98 EQMFQGLDFVISEARKYGIKLVLSMVNNYDQFGGKKQYVNWARGQGQSISSDDDFFTNSVVKQYYKNHIKTVLTRINTVT 177 (425)
Q Consensus 98 ~~~l~~lD~~i~~A~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~g~~~~~~~~fy~~~~~~~~~~~~~~~l~~R~N~~t 177 (425)
++..+.++++|+.|++.|...|...... . . .. ...++..+.+.+.++.++..
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~------~---------~-------~~-~~~~~~~~~~~~~l~~l~~~----- 131 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLAGK------R---------P-------AG-VSPEEARATLVENLRYAADA----- 131 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECcCC------C---------C-------CC-CCHHHHHHHHHHHHHHHHHH-----
Confidence 3456889999999999999987643210 0 0 00 11244556666777777764
Q ss_pred ccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 014426 178 GVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSIDG 223 (425)
Q Consensus 178 g~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~dp 223 (425)
-++..-.++.|..|=+..... +..=..++...|++++.
T Consensus 132 ---A~~~gi~l~lE~~~~~~~~~~-----~l~t~~~~~~li~~v~~ 169 (254)
T TIGR03234 132 ---LDRIGLTLLIEPINSFDMPGF-----FLTTTEQALAVIDDVGR 169 (254)
T ss_pred ---HHhcCCEEEEEECCcccCCCC-----hhcCHHHHHHHHHHhCC
Confidence 444445566776553322110 01112555566777664
No 265
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=22.42 E-value=1.4e+02 Score=30.88 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHh---------HHHHHHHHHHHHcC-CEEEEecc
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMF---------QGLDFVISEARKYG-IKLVLSMV 123 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l---------~~lD~~i~~A~~~G-i~vil~l~ 123 (425)
-++.++.|++.|+|-|-+-+ | .+|++.+ +.+.+.++.++++| +.|.++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGV---------Q----Sf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI 221 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGV---------Q----SFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLI 221 (449)
T ss_pred CHHHHHHHHHcCCCEEEecC---------C----cCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 35778999999999555421 1 1333333 34456788889999 77888885
No 266
>PLN02229 alpha-galactosidase
Probab=22.34 E-value=2.2e+02 Score=29.37 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred EEEeeccccccccCCCCcchHHHHHHHHHH-----HHcCCCEEEEccccCCCCCCC-CcCCCCC--ChHHh-HHHHHHHH
Q 014426 39 YANGFNAYWLMNTGANPYLKDKVSSVFQQA-----KEHGLSMARTWAFSDGGDSPL-QYSPGSY--NEQMF-QGLDFVIS 109 (425)
Q Consensus 39 ~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l-----~~~G~N~vRi~~~~~~~~~~~-q~~~g~~--~~~~l-~~lD~~i~ 109 (425)
-+.|.|.|...... -+.+.+++..+.| +++|.+.|=+ |..|..- ....|.+ |++.| ..+..+.+
T Consensus 63 PpmGWnSWn~~~~~---i~E~~i~~~ad~~v~~Gl~~~Gy~yv~i----DDgW~~~~rd~~G~l~~d~~rFP~G~k~lad 135 (427)
T PLN02229 63 PQMGWNSWNFFACN---INETVIKETADALVSTGLADLGYIHVNI----DDCWSNLKRDSKGQLVPDPKTFPSGIKLLAD 135 (427)
T ss_pred CCceEEchhhhCcc---cCHHHHHHHHHHHHHhHHHhCCCEEEEE----cCCcCCCCcCCCCCEEEChhhcCCcHHHHHH
Confidence 35677764322222 2346677777764 8889988765 3234211 0112322 44434 35889999
Q ss_pred HHHHcCCEEEEecc
Q 014426 110 EARKYGIKLVLSMV 123 (425)
Q Consensus 110 ~A~~~Gi~vil~l~ 123 (425)
..+++|||.=|-..
T Consensus 136 yiH~~GlKfGIy~d 149 (427)
T PLN02229 136 YVHSKGLKLGIYSD 149 (427)
T ss_pred HHHHCCCceEEecc
Confidence 99999999877543
No 267
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=22.27 E-value=7.1e+02 Score=23.95 Aligned_cols=57 Identities=11% Similarity=0.249 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeccCCCCCCCCChHHHHHHHHHHHHHhhccC
Q 014426 152 FFTNSVVKQYYKNHIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQAWITEMASYVKSID 222 (425)
Q Consensus 152 fy~~~~~~~~~~~~~~~l~~R~N~~tg~~y~~~p~I~~weL~NEP~~~~~~~~~~~~~w~~~~~~~Ir~~d 222 (425)
...++..++.|.+-+-.++++ |+=+--.+-||-. .. ...+.+..+++++.+.+++..
T Consensus 82 ~l~~~~~R~~fi~~iv~~~~~--------~~~dGidiD~E~~---~~---~d~~~~~~fl~eL~~~l~~~~ 138 (298)
T cd06549 82 LLADPSARAKFIANIAAYLER--------NQADGIVLDFEEL---PA---DDLPKYVAFLSELRRRLPAQG 138 (298)
T ss_pred HhcCHHHHHHHHHHHHHHHHH--------hCCCCEEEecCCC---Ch---hHHHHHHHHHHHHHHHhhhcC
Confidence 356888888888777777777 5433334445532 11 124678889999999888753
No 268
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=22.19 E-value=1.3e+02 Score=30.11 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCC-CChHHhHHHHHHHHHHHHcCCE-EEEecc
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGS-YNEQMFQGLDFVISEARKYGIK-LVLSMV 123 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~-~~~~~l~~lD~~i~~A~~~Gi~-vil~l~ 123 (425)
-++.++.|++.|+|.|=+-+ +...+.....-|. ++ .+.+.+.++.+++.|+. +-+++.
T Consensus 102 t~e~l~~lk~~G~nrisiGv--QS~~d~vL~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI 161 (353)
T PRK05904 102 TQSQINLLKKNKVNRISLGV--QSMNNNILKQLNRTHT---IQDSKEAINLLHKNGIYNISCDFL 161 (353)
T ss_pred CHHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 36789999999999554421 2100000000011 22 34556789999999986 667764
No 269
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.07 E-value=1.2e+02 Score=28.47 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
..+.+.++.+.++|+..|=+++|+-..|.+-+..-..+=.-.-..++..++...++||+|-+
T Consensus 40 ~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 101 (239)
T PRK14839 40 EAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTV 101 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57888999999999999999999754443211000000000113445556678888998644
No 270
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.00 E-value=2.3e+02 Score=26.47 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEeccc
Q 014426 60 KVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMVN 124 (425)
Q Consensus 60 ~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~ 124 (425)
..++.++.+++.|++.|=++.. + + +..+.++++++.++++||++++.++.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dl------p-------~--e~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDL------L-------I--DYPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCC------C-------C--CcHHHHHHHHHHHHHcCCCEEEEECC
Confidence 4556677778888887755321 0 1 12345778999999999999998853
No 271
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.96 E-value=4.3e+02 Score=24.51 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecccC
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMVNN 125 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~~~ 125 (425)
+.+++.++.++++|+.+|-+...... ...++ .|..-.+...+.+.++.+.|+++|+.+-+..+.+
T Consensus 84 ~~~~~~i~~a~~lg~~~vv~~~g~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~ 149 (274)
T COG1082 84 EELKRAIELAKELGAKVVVVHPGLGA--GADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHH 149 (274)
T ss_pred HHHHHHHHHHHHcCCCeEEeecccCC--cCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCC
Confidence 45666888899999998876432111 00010 1111125678899999999999999999887443
No 272
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.70 E-value=1.3e+02 Score=28.21 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
+.+++.++.+.++|+..|=+++|+-..|.+-+..-...=+-....|...+....++||+|-+
T Consensus 37 ~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 98 (230)
T PRK14837 37 KRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIV 98 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 57889999999999999999999754443211000000000112344455667788998764
No 273
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.65 E-value=1.3e+02 Score=28.63 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
..+++.++.+.++|+..|=+++|+-..|.+-+..-...=.-.-+.++..++...++||+|-+
T Consensus 53 ~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 114 (250)
T PRK14840 53 KSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRC 114 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57889999999999999999999754443211000000001124556667778889999754
No 274
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=21.64 E-value=8.2e+02 Score=24.46 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhccccccccccCCCC--cEEEEEeccCCCCCCC----CChHHHHHHHHHHHHHhhcc-CCCceEEe-
Q 014426 158 VKQYYKNHIKTVLTRINTVTGVAYKDEP--TIMAWELMNEPRCYAD----PSGKTIQAWITEMASYVKSI-DGNHLLEA- 229 (425)
Q Consensus 158 ~~~~~~~~~~~l~~R~N~~tg~~y~~~p--~I~~weL~NEP~~~~~----~~~~~~~~w~~~~~~~Ir~~-dp~~lV~~- 229 (425)
....|.+.+..|...+= .|+ +| .++-|-..=|+..... .+.+.+......+..++++. .+.++...
T Consensus 156 l~~~Y~~~~ski~D~~~-----~~~-s~~~vtiy~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~lk~~y 229 (355)
T COG4124 156 LSGNYDAMMSKIGDALA-----AYK-SNQVVTIYWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPWLKFMY 229 (355)
T ss_pred hhhhHHHHHHHHHHHHH-----Hhc-CCCceEEEechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCeeEEEE
Confidence 45566666666655421 144 34 5667998889887642 24567888888888888875 23333322
Q ss_pred C-CCCccCCCCCccccCCCCCCccccchhhcCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCCCcE
Q 014426 230 G-LEGFYGPSSSEKQQYNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLPSSSDESQTSFLNNWLYNHIQDAQDTLRKPI 308 (425)
Q Consensus 230 G-~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv 308 (425)
. ..++. ....+.|+ ...+|++..-.|.+.=.. ..+.....-+.+.+.---..++. .+||+
T Consensus 230 spn~~~~-----~~~~yYPG------------d~YVDiVGL~~ysd~~~n-~~~~~~~~tyaelt~~gy~~~~~-~nKPf 290 (355)
T COG4124 230 SPNGGFK-----GLEAYYPG------------DNYVDIVGLDVYSDDPYN-QGDTGRDKTYAELTGPGYNRVAG-FNKPF 290 (355)
T ss_pred cCCCCcc-----cchhcCCC------------CceeeeeeeeccccCccc-cccccccccHHHHhcCcchhhhh-cCCce
Confidence 1 11111 11223443 345677777777543111 00000000011111000012222 79999
Q ss_pred EEEeccCCCCC
Q 014426 309 LLAEFGKSLKT 319 (425)
Q Consensus 309 ~i~EfG~~~~~ 319 (425)
.+.|.|....+
T Consensus 291 ~faElGp~~~~ 301 (355)
T COG4124 291 GFAELGPEGGG 301 (355)
T ss_pred eeecccccCCC
Confidence 99999987764
No 275
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.55 E-value=1.4e+02 Score=28.05 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
..+.+.++.+.++|+..|=+|+|+-..|.+-+..-..+=.-.-..|+..+....++||+|-+
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~ 85 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRI 85 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 56888999999999999999999764443211000000001113344555667788888754
No 276
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.53 E-value=1.3e+02 Score=28.86 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
.++++.+.+.|+..|+++...... -.+..-+.--++.++.+...+..|+++|+.+.+.+.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~--~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~ 135 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASET--FSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVS 135 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHH--HHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 467888889999999996532210 001111112367888999999999999999988775
No 277
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=21.47 E-value=2.5e+02 Score=29.41 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
-.+.++.|-+.|+|++|+. |+.|. + ++.-++++.+=+.+++.|..|=+-+
T Consensus 19 s~e~l~~li~aG~nV~RlN-fSHG~----------~-e~h~~~i~~vR~~~~~~~~~vaIl~ 68 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRLN-FSHGD----------H-EEHKKRIDNVREAAEKLGRPVAILL 68 (477)
T ss_pred CHHHHHHHHHccCcEEEEe-cCCCC----------h-HHHHHHHHHHHHHHHHhCCceEEEE
Confidence 3466888889999999994 33331 2 4566778877788888877665544
No 278
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=21.40 E-value=1.3e+02 Score=28.02 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEE
Q 014426 59 DKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVL 120 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil 120 (425)
+.+++.++.+.++|+..|=+++|+--.|.+-+..-...=.=..+.|+..++...++||+|-+
T Consensus 30 ~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 91 (226)
T TIGR00055 30 KSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRI 91 (226)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57889999999999999999999754443211000000000123444555667788998765
No 279
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=21.10 E-value=63 Score=26.19 Aligned_cols=17 Identities=6% Similarity=0.217 Sum_probs=10.6
Q ss_pred EEEeCCeEEECCeeEEE
Q 014426 24 ITAKGVHLMLNGSPFYA 40 (425)
Q Consensus 24 v~v~g~~f~~~G~p~~~ 40 (425)
|.+.++.+.+||+.+++
T Consensus 39 v~~e~~lv~IDgq~YrL 55 (118)
T PF14481_consen 39 VQPEKNLVDIDGQHYRL 55 (118)
T ss_dssp EEGGGTEEEETTEEEE-
T ss_pred eecccceEEEcCcEEeC
Confidence 44456666778887764
No 280
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=20.80 E-value=4.5e+02 Score=29.76 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 99 QMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 99 ~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
+.++.|..+|++|+++||+||-.++
T Consensus 805 ~~~~~l~~~i~~~~~~~~~~ig~~~ 829 (912)
T TIGR02171 805 ENMNSLKAFIDETAKKGVKVIGTIF 829 (912)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 4578999999999999999998775
No 281
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=20.19 E-value=3e+02 Score=25.63 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEcc-ccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCE-EEEecc
Q 014426 59 DKVSSVFQQAKEHGLSMARTWA-FSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIK-LVLSMV 123 (425)
Q Consensus 59 ~~~~~~l~~l~~~G~N~vRi~~-~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~-vil~l~ 123 (425)
+.+.+.++.+++.|- .+-+.. .++|+ +. ...+.|-.+++.|+++|++ |.|-++
T Consensus 14 ~~l~~~~~~~k~~~~-~lHl~GLlSdGG---------VH--Sh~~Hl~al~~~a~~~gv~~V~vH~f 68 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGG-RLHLMGLLSDGG---------VH--SHIDHLFALIKLAKKQGVKKVYVHAF 68 (223)
T ss_dssp HHHHHHHHHHCCTT---EEEEEEESS-S---------SS----HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred HHHHHHHHHHHhcCC-eEEEEEEecCCC---------cc--ccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 567788888887774 344432 45542 22 2578899999999999986 556543
No 282
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.18 E-value=1.2e+02 Score=28.88 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHcC----CCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCEEEEec
Q 014426 62 SSVFQQAKEHG----LSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIKLVLSM 122 (425)
Q Consensus 62 ~~~l~~l~~~G----~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l 122 (425)
.++++.+.+.| +..||++..... ...+..-+.=.++.++.+..++..|+++|+++.+.+
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSD--IHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 35566666667 999999642110 001111111124567888899999999999987654
No 283
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.18 E-value=1.8e+02 Score=29.17 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCE-EEEecc
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIK-LVLSMV 123 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~-vil~l~ 123 (425)
-++.++.|+++|+|.|-+-+ +...+.+...-+.. ...+.+.++++.+++.|+. +.++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGv--QS~~~~~L~~l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli 166 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGM--QSAAPHVLAVLDRT--HTPGRAVAAAREARAAGFEHVNLDLI 166 (375)
T ss_pred CHHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 35778999999999665522 11000000000111 1133455788899999998 878874
No 284
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.09 E-value=2.6e+02 Score=28.94 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCCCc-CCCCCChHHhHHHHHHHHHHHHcCCEEEEecc
Q 014426 62 SSVFQQAKEHGLSMARTWAFSDGGDSPLQY-SPGSYNEQMFQGLDFVISEARKYGIKLVLSMV 123 (425)
Q Consensus 62 ~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~-~~g~~~~~~l~~lD~~i~~A~~~Gi~vil~l~ 123 (425)
++.++.|++.|++.|-+- ...+....+.. ..+ . ..+.+.+++..++++||.+..++.
T Consensus 287 ~e~l~~l~~aG~~~v~iG-iES~s~~~L~~~~K~-~---~~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVG-YESGDQQILKNIKKG-L---TVEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred HHHHHHHHHcCCCEEEEc-CCCCCHHHHHHhcCC-C---CHHHHHHHHHHHHHCCCeEEEEEE
Confidence 456777777787755441 11110000000 011 1 134556888999999999888774
No 285
>PRK01060 endonuclease IV; Provisional
Probab=20.06 E-value=3.3e+02 Score=25.64 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHH--HHcCCEEEEecc
Q 014426 58 KDKVSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEA--RKYGIKLVLSMV 123 (425)
Q Consensus 58 ~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A--~~~Gi~vil~l~ 123 (425)
.+.+.+.++.++++|+..|.++.... . +..-.++.++.+-+.++.+ +..|+++.+.-+
T Consensus 88 ~~~~~~~i~~A~~lga~~vv~h~G~~----~----~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~ 147 (281)
T PRK01060 88 RDFLIQEIERCAALGAKLLVFHPGSH----L----GDIDEEDCLARIAESLNEALDKTQGVTIVLENT 147 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcC----C----CCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 35688889999999999999853211 0 0111123666666666654 557887777654
No 286
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=20.05 E-value=1.4e+02 Score=29.59 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCcCCCCCChHHhHHHHHHHHHHHHcCCE-EEEecc
Q 014426 61 VSSVFQQAKEHGLSMARTWAFSDGGDSPLQYSPGSYNEQMFQGLDFVISEARKYGIK-LVLSMV 123 (425)
Q Consensus 61 ~~~~l~~l~~~G~N~vRi~~~~~~~~~~~q~~~g~~~~~~l~~lD~~i~~A~~~Gi~-vil~l~ 123 (425)
-++.++.++++|+|-|-+-+ +...+.....-|+-. ..+.+.++++.+++.|+. |-++|.
T Consensus 97 ~~e~l~~l~~~GvnRiSiGv--QS~~~~~L~~lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli 156 (350)
T PRK08446 97 TKAWLKGMKNLGVNRISFGV--QSFNEDKLKFLGRIH--SQKQIIKAIENAKKAGFENISIDLI 156 (350)
T ss_pred CHHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCEEEEEee
Confidence 36789999999999555422 110001111112211 144566788999999996 557774
No 287
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=20.05 E-value=4.8e+02 Score=25.55 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=45.3
Q ss_pred cCCCCcEEEEEeccCCCCCCC----C---ChHHHHHHHHHHHHHhhccC-CCceEEeCC-CCccCCCCCccccCCCCCCc
Q 014426 181 YKDEPTIMAWELMNEPRCYAD----P---SGKTIQAWITEMASYVKSID-GNHLLEAGL-EGFYGPSSSEKQQYNPNFQV 251 (425)
Q Consensus 181 y~~~p~I~~weL~NEP~~~~~----~---~~~~~~~w~~~~~~~Ir~~d-p~~lV~~G~-~g~~~~~~~~~~~~np~~~~ 251 (425)
+++...-+.|=...|.++... . +++.+.+..+.|.++++... -+.||-+=. .+... ....+.|+
T Consensus 146 l~~~~vPVl~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~~Nliwvw~~~~~~~----~~~~yYPG--- 218 (311)
T PF02156_consen 146 LKDAGVPVLFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGLHNLIWVWSPNGSRD----DAAEYYPG--- 218 (311)
T ss_dssp HHCTTS-EEEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST-TSEEEEE-EBTTSS----CTCTT------
T ss_pred hhcCCCeEEEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCCceEEEEecCCCCCC----CccccCCC---
Confidence 444423334899999987532 1 26788888999999998754 456666511 11111 01123443
Q ss_pred cccchhhcCCCCCcEEEEecCCC
Q 014426 252 GTDFIANNQIPGIDFATLHSYPD 274 (425)
Q Consensus 252 g~df~~~~~~~~iD~~s~H~Y~~ 274 (425)
.+.+|++++-.|..
T Consensus 219 ---------D~yVDivG~D~Y~~ 232 (311)
T PF02156_consen 219 ---------DDYVDIVGVDVYND 232 (311)
T ss_dssp ---------TTT-SEEEEEEEES
T ss_pred ---------CCeEEEEEEeCCCC
Confidence 46799999999986
Done!