Query 014427
Match_columns 425
No_of_seqs 117 out of 179
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1793 Uncharacterized conser 100.0 1.5E-57 3.3E-62 456.4 16.6 246 172-424 65-324 (417)
2 COG5139 Uncharacterized conser 100.0 3.5E-42 7.5E-47 337.1 13.5 180 223-408 117-299 (397)
3 PF08711 Med26: TFIIS helical 99.2 2.7E-11 5.8E-16 90.9 5.0 53 337-396 1-53 (53)
4 cd00183 TFIIS_I N-terminal dom 98.5 6.3E-07 1.4E-11 72.4 7.8 58 330-395 18-75 (76)
5 smart00509 TFS2N Domain in the 98.0 1E-05 2.2E-10 65.6 5.3 57 332-396 18-74 (75)
6 TIGR01385 TFSII transcription 97.1 0.00049 1.1E-08 69.0 4.8 53 337-397 25-77 (299)
7 KOG1105 Transcription elongati 96.0 0.015 3.4E-07 58.7 6.5 73 314-397 7-80 (296)
8 PLN02976 amine oxidase 95.3 0.068 1.5E-06 63.9 9.2 87 301-398 1271-1359(1713)
9 PF11176 DUF2962: Protein of u 59.8 24 0.00052 32.6 5.9 79 249-332 63-145 (155)
10 PF06371 Drf_GBD: Diaphanous G 52.5 1E+02 0.0022 27.5 8.5 94 290-388 83-182 (187)
11 PF10498 IFT57: Intra-flagella 46.6 88 0.0019 32.8 8.1 102 286-400 5-130 (359)
12 PF14278 TetR_C_8: Transcripti 45.8 44 0.00096 25.0 4.5 19 304-322 59-77 (77)
13 cd03567 VHS_GGA VHS domain fam 44.1 1E+02 0.0022 28.0 7.2 60 285-345 55-114 (139)
14 KOG2973 Uncharacterized conser 32.1 98 0.0021 32.6 5.7 72 329-404 255-328 (353)
15 cd00197 VHS_ENTH_ANTH VHS, ENT 26.7 3.6E+02 0.0077 22.7 7.4 61 283-344 52-112 (115)
16 KOG3050 COP9 signalosome, subu 26.6 1.2E+02 0.0027 31.0 5.2 81 315-396 208-298 (299)
17 PLN00061 photosystem II protei 25.4 3E+02 0.0065 26.1 7.1 109 235-344 34-148 (150)
18 KOG3977 Troponin I [Cytoskelet 24.7 2.1E+02 0.0046 28.3 6.2 77 314-404 71-152 (221)
19 cd03569 VHS_Hrs_Vps27p VHS dom 24.1 2.5E+02 0.0055 25.3 6.3 56 285-346 58-113 (142)
20 PLN02777 photosystem I P subun 23.7 3.2E+02 0.0069 26.3 7.0 88 290-397 78-165 (167)
21 PF00514 Arm: Armadillo/beta-c 23.4 1.9E+02 0.0041 20.0 4.4 37 303-345 3-39 (41)
No 1
>KOG1793 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-57 Score=456.44 Aligned_cols=246 Identities=45% Similarity=0.674 Sum_probs=216.6
Q ss_pred HHHHHHHhcCCCCCCCc---hhhcccCccC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcHHHHHHHhhc
Q 014427 172 MLNEMWNAVAPTGDSED---DQEGVRTLDD-----DNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKM 243 (425)
Q Consensus 172 ~~~e~~~~i~~~~ds~~---~~e~~rt~~d-----d~fiD~~g~d~~d~~g~d~e~~~~~d~~~a~e~E~Ddei~~llk~ 243 (425)
...++|+.+. .+-+. ++.+.++..+ -+|+.++|.++-+-++.+.......+++.+...|...++.++|+|
T Consensus 65 ~~~~~~~~~~--~~~~r~~Kd~k~~~s~~~~e~~~~d~~~e~~~~~~e~~~~d~~d~~~~r~~~~~~~ed~~e~~~~~k~ 142 (417)
T KOG1793|consen 65 PADEDENSNL--EDRKRERKDEKGLDSDGDNEKEHEDESQETGQEFPESQDDDFGDTGGRRPKLKAKLEDILEKKAVRKM 142 (417)
T ss_pred ccchhhcccc--cchhhhhccccccccccccchhhhHhhhccccccccccccccccccccchhhHhhhhhHHHHHHHHhh
Confidence 6677887776 33333 3344444444 449999998877666655556666777888888999999999999
Q ss_pred cccccccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhc
Q 014427 244 GKKRKKNEKSPAEIA-LLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLE 322 (425)
Q Consensus 244 ~KkKkk~~~s~~Ei~-~~v~~Li~~M~~AAeeD~ean~~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLe 322 (425)
+++++++...+.+|. .+|..|+.+|..||+.|+++|.+++||++||+|||.|.++|.|++||.+|||||||+.|+.||+
T Consensus 143 r~kk~~~d~~~~~I~d~~v~~l~~~m~~aa~~D~~~N~e~kPA~~Klk~Lp~v~~vL~k~~L~et~LDngvL~~lk~WLe 222 (417)
T KOG1793|consen 143 RTKKRKNDDGPEEILDDEVSRLMERMEDAAEKDRELNREGKPATQKLKLLPLVVAVLSKKALQETFLDNGVLDSLKEWLE 222 (417)
T ss_pred hhhhccccCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCchHHHHhccHHHHHHHhhhhHHHHHHhhhHHHHHHHHhc
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHHhhhhhhccCccc
Q 014427 323 PLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRF 402 (425)
Q Consensus 323 PLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~ss~Y 402 (425)
||||||||||+||.+||+||..|||.+ +|||++||||||||||++||+||++||+||..||++|+||||+++++|
T Consensus 223 PLPD~SLPal~Ir~~ll~iL~dlpi~~-----~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsRpI~~~st~y 297 (417)
T KOG1793|consen 223 PLPDGSLPALNIRKSLLDILNDLPIDK-----REHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSRPIFKLSTNY 297 (417)
T ss_pred cCCCCCCcchHHHHHHHHHHhcCCcch-----HHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999976 589999999999999999999999999999999999999999999999
Q ss_pred hhhhcc----cccc-CCCCCccccccC
Q 014427 403 EDMKTV----EDDR-VPFRRPSAKKYC 424 (425)
Q Consensus 403 ~d~~~~----e~e~-~~~rr~~~~~~~ 424 (425)
++|++. ++.+ +++||++++.++
T Consensus 298 ~dm~~~~e~~de~r~~~~Rr~~~~~~~ 324 (417)
T KOG1793|consen 298 RDMRRMREERDEKRMPQSRRDSAKARK 324 (417)
T ss_pred hhhHHHHhhhhhhhhhhhhcccccccc
Confidence 999963 4555 477888887763
No 2
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-42 Score=337.05 Aligned_cols=180 Identities=33% Similarity=0.598 Sum_probs=164.6
Q ss_pred CCCCccCCCCcHHHHHHHhhccccc---cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHH
Q 014427 223 HDAPQAEEGDEDEEIKELFKMGKKR---KKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299 (425)
Q Consensus 223 ~d~~~a~e~E~Ddei~~llk~~KkK---kk~~~s~~Ei~~~v~~Li~~M~~AAeeD~ean~~gkPAl~KLkmLpeV~~~L 299 (425)
.+.++|...|.++.+.++|+..+.. ++....++=+..++..|..+|..||..|+..|..+.||+.||+|||+|..+|
T Consensus 117 ~d~t~a~~~El~~~~dr~lK~p~~sr~rr~eD~leq~~de~~lrLk~~M~~aa~~D~~~n~e~~pAt~Kik~lp~V~~VL 196 (397)
T COG5139 117 QDFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEISLRLKKRMQDAAKKDNANNLEGRPATGKIKNLPEVSDVL 196 (397)
T ss_pred CCCChhhhhhhhhhhhhhhccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhccHHHHHHH
Confidence 3467788899999999999833332 2334445566778999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHH
Q 014427 300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379 (425)
Q Consensus 300 ~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~e 379 (425)
.|.+||.+|||||||+.|+.||+||||+||||++||+.||.+|..|||.+ |||++||||+||+||+.+|++.++
T Consensus 197 ~k~~L~dtiLDnniLdsVr~WLEPLPD~SlP~~~IqksL~dvL~~lpI~t------EHL~eSgvGrIV~FYtiskk~e~~ 270 (397)
T COG5139 197 MKKALQDTILDNNILDSVRGWLEPLPDKSLPNIKIQKSLLDVLKTLPIHT------EHLVESGVGRIVYFYTISKKEEKE 270 (397)
T ss_pred HHHHHHHHHhhcchHHHHHhhhccCCCCCCcchHHHHHHHHHHhhCCchH------HHhhhcCCceEEEEEecCCcccHH
Confidence 99999999999999999999999999999999999999999999999987 699999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccCccchhhhcc
Q 014427 380 NRKLAKDLVDKWSRPIFNKSTRFEDMKTV 408 (425)
Q Consensus 380 NKrlA~~LI~kWSRPI~~~ss~Y~d~~~~ 408 (425)
++++|..||++|+||||+.|.+|+|.+..
T Consensus 271 v~r~A~~LV~eWtrpIik~s~nyRDk~i~ 299 (397)
T COG5139 271 VRRSAKALVQEWTRPIIKPSGNYRDKRIM 299 (397)
T ss_pred HHHHHHHHHHHhhccccCcCCCcchhhhh
Confidence 99999999999999999999999997754
No 3
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=99.18 E-value=2.7e-11 Score=90.88 Aligned_cols=53 Identities=45% Similarity=0.713 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHHhhhhhh
Q 014427 337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396 (425)
Q Consensus 337 ~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~ 396 (425)
.+|+.|..|||+ .++|++|+||++|.+|++| .++++|+.+|+.||.+|+++|+
T Consensus 1 ~iL~~L~~l~it------~~~L~~T~IGk~V~~l~k~-~~~~~i~~~A~~Li~~Wk~~v~ 53 (53)
T PF08711_consen 1 EILKVLEKLPIT------VELLKSTGIGKAVNKLRKH-SENPEIRKLAKELIKKWKRIVD 53 (53)
T ss_dssp HHHHHHHCSS-S------HHHHHHHSHHHHHHHHHHC-TS-HHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHhhcCCCC------HHHHHhCChhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHhcC
Confidence 489999999996 4799999999999999999 9999999999999999999985
No 4
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=98.47 E-value=6.3e-07 Score=72.37 Aligned_cols=58 Identities=29% Similarity=0.563 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHHhhhhh
Q 014427 330 PNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPI 395 (425)
Q Consensus 330 Pnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI 395 (425)
|+...--.+|..|..|||+. +.|+.++||++|.+|++|+. +.++.+|..||.+|...|
T Consensus 18 ~~~~~~~~~L~~L~~~~it~------~~L~~T~iG~~V~~Lrkh~~--~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 18 EEVSRLLDLLRLLKKLPLTV------EILKETRIGKKVNSLRKHSN--EKIRKLAKALIKSWKKLV 75 (76)
T ss_pred CCHHHHHHHHHHHhcCCCCH------HHHHHCCHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhc
Confidence 78888889999999999854 79999999999999999987 999999999999999876
No 5
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=98.00 E-value=1e-05 Score=65.57 Aligned_cols=57 Identities=32% Similarity=0.540 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHHhhhhhh
Q 014427 332 INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396 (425)
Q Consensus 332 l~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~ 396 (425)
..-=-.+|..|..|||+ .++|+.+.||++|..|++|+ .++++.+|..||..|...|.
T Consensus 18 ~~~~l~~L~~L~~~~~t------~~~L~~T~iG~~v~~Lrkh~--~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 18 VSRCLDILKKLKKLPIT------VDLLEETRIGKKVNGLRKHK--NEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred HHHHHHHHHHHhcCCCC------HHHHHHCcHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHhc
Confidence 33334678888888885 47999999999999999996 59999999999999998763
No 6
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=97.14 E-value=0.00049 Score=69.00 Aligned_cols=53 Identities=30% Similarity=0.485 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHHhhhhhhc
Q 014427 337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFN 397 (425)
Q Consensus 337 ~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~ 397 (425)
.+|+.|..|||. .+.|+++.||++|..|++|+. ++|+.+|+.||..|...|..
T Consensus 25 ~~L~~L~~~~~t------~~lL~~T~IG~~Vn~lrkh~~--~~I~~lAk~li~~WK~~v~~ 77 (299)
T TIGR01385 25 DILHQLKEFPPT------EELLQETKVGVKVNKLRKHPN--EDISKLAKKIIKSWKKVVDK 77 (299)
T ss_pred HHHHHHhcCCCc------HHHHhhCchhHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHhh
Confidence 467788888884 479999999999999999975 57999999999999999986
No 7
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=95.98 E-value=0.015 Score=58.65 Aligned_cols=73 Identities=29% Similarity=0.423 Sum_probs=60.1
Q ss_pred HHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhH-hhhcCchhcHHHHHHHHHHHHHhh
Q 014427 314 LTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIM-FLSKSDEETTSNRKLAKDLVDKWS 392 (425)
Q Consensus 314 L~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVm-fL~K~p~ET~eNKrlA~~LI~kWS 392 (425)
+.+.+. |+-++.. +|+.---.+|+-|.++||. .++|..+.||..|. ++.+|+.+ +++.+|+.||..|.
T Consensus 7 ~r~ak~-l~~~~~~--~n~~~~ld~l~~L~~~pvt------~ell~~Tr~g~~vn~~~Kk~~n~--ev~~~ak~Lik~Wk 75 (296)
T KOG1105|consen 7 LRAAKA-LEKDKQS--KNVEAALDLLKRLKKIPVT------LELLQETRTGMGVNEVLKKHKNE--EVRSLAKKLIKSWK 75 (296)
T ss_pred HHHHHH-HHhhccc--ccHHHHHHHHHHHHhcccH------HHHHHHhhHHHHHHHHHHhCCCH--HHHHHHHHHHHHHH
Confidence 343444 6666655 8877777889999999984 47999999999999 88888875 78889999999999
Q ss_pred hhhhc
Q 014427 393 RPIFN 397 (425)
Q Consensus 393 RPI~~ 397 (425)
+.|..
T Consensus 76 k~~~~ 80 (296)
T KOG1105|consen 76 KLVDK 80 (296)
T ss_pred HHhhc
Confidence 99987
No 8
>PLN02976 amine oxidase
Probab=95.27 E-value=0.068 Score=63.91 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=65.9
Q ss_pred hHhHHHHHHhhhhHHHHHHhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcH
Q 014427 301 KKQLQQEFLDHGVLTLLKNWLE--PLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETT 378 (425)
Q Consensus 301 K~~Lq~~fLD~GiL~vLk~WLe--PLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~ 378 (425)
-.+|..+-+....|..|..||. --++| -++-+.++.+|.-+|.+. -.|+.|||||+|--=. |--..+
T Consensus 1271 ~~~~~~~a~~~~gl~~l~~w~~~~~~~~~----~~l~~~~~~ll~~~~~d~------~a~r~sg~~~~~k~~~-~~h~~~ 1339 (1713)
T PLN02976 1271 VETLKSFAGTKEGLATLNSWILDSMGKDG----TQLLRHCVRLLVLVSTDL------LAVRLSGIGKTVKEKV-CVHTSR 1339 (1713)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhcccH----HHHHHHHHHHHhhcchhH------HHHHhccchHHHHhhh-hhcccH
Confidence 3555666666788999999998 33555 356688889998888765 4899999999984222 445678
Q ss_pred HHHHHHHHHHHHhhhhhhcc
Q 014427 379 SNRKLAKDLVDKWSRPIFNK 398 (425)
Q Consensus 379 eNKrlA~~LI~kWSRPI~~~ 398 (425)
+||.||.+|++.|+...-..
T Consensus 1340 ~~r~~a~~~~~~w~~~~~~~ 1359 (1713)
T PLN02976 1340 DIRAIASQLVSVWLEVFRRE 1359 (1713)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999765433
No 9
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=59.80 E-value=24 Score=32.62 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=47.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHhH----HHHHHhhhhHHHHHHhhccC
Q 014427 249 KNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQL----QQEFLDHGVLTLLKNWLEPL 324 (425)
Q Consensus 249 k~~~s~~Ei~~~v~~Li~~M~~AAeeD~ean~~gkPAl~KLkmLpeV~~~L~K~~L----q~~fLD~GiL~vLk~WLePL 324 (425)
+...+.+|+..+|...|.+-..=.++=....+.|+|+.++..+|...++...+..- .+-|.+..-+..|+.|
T Consensus 63 ~~~~t~~e~~~lI~~yl~R~DeEleql~~~rR~gRp~s~re~~L~~~~~~E~~ey~~G~~vPDLtd~~nv~~Lr~W---- 138 (155)
T PF11176_consen 63 KKPFTLEEIHELIERYLHRFDEELEQLKKERRKGRPPSNREDLLEQKIEREEEEYKTGFEVPDLTDEKNVKLLREW---- 138 (155)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHGGGT---TTHHHHHHHHHHHHHHHHHTTEEEE-S--HHHHHHHHT-----
T ss_pred CCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCeeCCCCCCHHHHHHHHhc----
Confidence 44677899999999999887665555444578899999999999987776544332 1114455567889999
Q ss_pred CCCCCCCH
Q 014427 325 PDGSLPNI 332 (425)
Q Consensus 325 PDgSLPnl 332 (425)
||++-.+
T Consensus 139 -~G~~~~l 145 (155)
T PF11176_consen 139 -NGDWGYL 145 (155)
T ss_dssp -SS-STHH
T ss_pred -CCChhhC
Confidence 7776543
No 10
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=52.53 E-value=1e+02 Score=27.51 Aligned_cols=94 Identities=28% Similarity=0.306 Sum_probs=56.7
Q ss_pred hhhHHHHHHHhhH--hHHHHHHhhhhHHHHHHhhccCC---CCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcc
Q 014427 290 KKLSLLTEVLSKK--QLQQEFLDHGVLTLLKNWLEPLP---DGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLG 364 (425)
Q Consensus 290 kmLpeV~~~L~K~--~Lq~~fLD~GiL~vLk~WLePLP---DgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLG 364 (425)
+.|..+.-.|+.. .|...|+++|++.+|..+|.-+. ..+-..+.+...+|.||..+ +++..+ ....|...++=
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal-~n~~~G-~~~v~~~~~~v 160 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL-MNTKYG-LEAVLSHPDSV 160 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH-TSSHHH-HHHHHCSSSHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH-HccHHH-HHHHHcCcHHH
Confidence 5566666666654 78899999999999999998874 33456788999999998775 222211 12233333332
Q ss_pred hh-hHhhhcCchhcHHHHHHHHHHH
Q 014427 365 KV-IMFLSKSDEETTSNRKLAKDLV 388 (425)
Q Consensus 365 KV-VmfL~K~p~ET~eNKrlA~~LI 388 (425)
.. +..|. + ..+..|.+|-+|+
T Consensus 161 ~~i~~~L~-s--~~~~~r~~~leiL 182 (187)
T PF06371_consen 161 NLIALSLD-S--PNIKTRKLALEIL 182 (187)
T ss_dssp HHHHHT---T--TSHHHHHHHHHHH
T ss_pred HHHHHHHC-C--CCHHHHHHHHHHH
Confidence 22 22222 2 3345666666654
No 11
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.64 E-value=88 Score=32.77 Aligned_cols=102 Identities=26% Similarity=0.463 Sum_probs=67.0
Q ss_pred HHHHhhhHHHHHHHhhHhH----HHHHH--------hhhhHHHHHHhhccCCCCC--------CCCHHHHHHHHHHHhcC
Q 014427 286 INKLKKLSLLTEVLSKKQL----QQEFL--------DHGVLTLLKNWLEPLPDGS--------LPNINIRAAILKILTEF 345 (425)
Q Consensus 286 l~KLkmLpeV~~~L~K~~L----q~~fL--------D~GiL~vLk~WLePLPDgS--------LPnl~IRt~LLkiL~~L 345 (425)
+.||++|.-=...|.+..+ .-+|. ....+..|+.||--+-... =|| .+-..||..|..|
T Consensus 5 ~dKLklL~Ye~~f~~~~~~kpl~r~yFa~~~~Np~eQF~~F~~L~~WL~~~~g~~f~~p~e~DDPn-~~~~~Il~~lr~~ 83 (359)
T PF10498_consen 5 LDKLKLLNYEKDFCKKRKMKPLSRHYFAVPSTNPGEQFYYFTSLCAWLISKAGRKFEQPQEYDDPN-ATISNILDELRKL 83 (359)
T ss_pred HHHHHhhhhHHHHhhhcCCCCCCHHHhcCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCcccCCHH-HHHHHHHHHHHcc
Confidence 5789999866666654433 33455 2478999999996443333 345 6667788888877
Q ss_pred CCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHH----HhhhhhhccCc
Q 014427 346 PIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVD----KWSRPIFNKST 400 (425)
Q Consensus 346 PId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~----kWSRPI~~~ss 400 (425)
-+..+.. -..| .+|-|..|+|+-. .||..-+. .|.||+|....
T Consensus 84 g~~~df~--p~kL-k~G~Ge~vc~VLd---------~Lad~AL~~~~F~~~~p~~~~e~ 130 (359)
T PF10498_consen 84 GVPVDFP--PSKL-KQGSGEHVCYVLD---------QLADEALKRKNFKWKRPIYPKEE 130 (359)
T ss_pred CCCCCCC--hHHh-hCCCCHHHHHHHH---------HHHHHHHHhcCcCccCCCCCccc
Confidence 5433221 2344 5799999998763 35555444 59999998865
No 12
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=45.77 E-value=44 Score=25.00 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=17.1
Q ss_pred HHHHHHhhhhHHHHHHhhc
Q 014427 304 LQQEFLDHGVLTLLKNWLE 322 (425)
Q Consensus 304 Lq~~fLD~GiL~vLk~WLe 322 (425)
+.-.|+-.|++.+|..||+
T Consensus 59 y~~~f~~sg~igvi~~Wl~ 77 (77)
T PF14278_consen 59 YLISFIVSGIIGVIQWWLE 77 (77)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 6678999999999999995
No 13
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.06 E-value=1e+02 Score=28.05 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 014427 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (425)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (425)
++.-|.+|..++.-|- ..+|..+....+|+.|..=+.|-..|+-++..||..+|.+|...
T Consensus 55 ~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 55 ALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 5666666666666533 45778888889998888888776678888999999999999765
No 14
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.14 E-value=98 Score=32.64 Aligned_cols=72 Identities=24% Similarity=0.329 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHHhhh--hhhccCccchh
Q 014427 329 LPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSR--PIFNKSTRFED 404 (425)
Q Consensus 329 LPnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSR--PI~~~ss~Y~d 404 (425)
-|.-.||..+|.+|..|-.. .. -|++|+.-|+=.++--|.+.- +.+.+++.|.++|+--.| |-.|.-.+|..
T Consensus 255 epdpdIrk~llEai~lLcaT-~~--GRe~lR~kgvYpilRElhk~e-~ded~~~ace~vvq~Lv~~e~~~G~~~~~~s 328 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCAT-RA--GREVLRSKGVYPILRELHKWE-EDEDIREACEQVVQMLVRLEPEIGILDEYES 328 (353)
T ss_pred CCChHHHHHHHHHHHHHHhh-hH--hHHHHHhcCchHHHHHHhcCC-CcHHHHHHHHHHHHHHHhcccccchhhhcCc
Confidence 35667999999999998653 22 399999999999999998877 889999999999999988 77787778874
No 15
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.75 E-value=3.6e+02 Score=22.71 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=41.8
Q ss_pred ChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhc
Q 014427 283 KPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTE 344 (425)
Q Consensus 283 kPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~ 344 (425)
.-++.=|.+|..++.-+... ++..|-.+.++..+-.-..+-..|.-++.+||+.++.++..
T Consensus 52 ~~~lkaL~lLe~lvkN~g~~-f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 52 HVVLKALTLLEYCVKNCGER-FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHHHHHHHccHH-HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 34566666666666665443 44567677666666554555567888899999999998864
No 16
>KOG3050 consensus COP9 signalosome, subunit CSN6 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.61 E-value=1.2e+02 Score=31.02 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=48.7
Q ss_pred HHHHHhhccCCCCCC-CCHHHHHHHHHHHhcCCC-CccccchHHHHhhcCcchhhHhh---hcCch-----hcHHHHHHH
Q 014427 315 TLLKNWLEPLPDGSL-PNINIRAAILKILTEFPI-DLEQFDRREQLKKSGLGKVIMFL---SKSDE-----ETTSNRKLA 384 (425)
Q Consensus 315 ~vLk~WLePLPDgSL-Pnl~IRt~LLkiL~~LPI-d~e~~d~rE~Lk~SGLGKVVmfL---~K~p~-----ET~eNKrlA 384 (425)
..|-.+|++.-+|+| ||+.|=+...-++..||+ +.+.+ +-+-+.+..=--++-|| +++-. ...-|-..+
T Consensus 208 klil~Y~k~~e~G~l~~N~eILrea~~L~~~Lp~~~~~~F-~d~F~~e~nd~~l~syl~~iT~~~~nMn~~vnKfn~~yd 286 (299)
T KOG3050|consen 208 KLILAYLKKVEAGTLQPNFEILREAYALCHRLPVMESEKF-QDNFYMECNDVGLISYLGTITKCCNNMNEVVNKFNTLYD 286 (299)
T ss_pred HHHHHHHhhhhcCCcCccHHHHHHHHHHHhhccccchHHH-hHHHHHhcchhhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 446678889999996 689999999999999995 32211 11223333222222222 22222 223455566
Q ss_pred HHHHHHhhhhhh
Q 014427 385 KDLVDKWSRPIF 396 (425)
Q Consensus 385 ~~LI~kWSRPI~ 396 (425)
+.+..+|.|++|
T Consensus 287 r~gt~R~~r~~~ 298 (299)
T KOG3050|consen 287 RQGTRRRMRGLF 298 (299)
T ss_pred hhhhhccccccC
Confidence 777889999876
No 17
>PLN00061 photosystem II protein Psb27; Provisional
Probab=25.40 E-value=3e+02 Score=26.07 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=59.7
Q ss_pred HHHHHHhhccccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCChHHHHHhhhHHHHHHHhhHhH---HHHHHh
Q 014427 235 EEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDA-ELNRQGKPAINKLKKLSLLTEVLSKKQL---QQEFLD 310 (425)
Q Consensus 235 dei~~llk~~KkKkk~~~s~~Ei~~~v~~Li~~M~~AAeeD~-ean~~gkPAl~KLkmLpeV~~~L~K~~L---q~~fLD 310 (425)
+.|..+|.+--+-|.-+.-+.+...-+.+++..|..|.+.+- ...+..+-|-.-...+...++.-+...- ..+|.+
T Consensus 34 ~~~~~~fdp~e~tksg~~Lpg~Y~kdtr~VV~tLresl~l~p~D~~~~~~aa~~Ake~IndYisryR~~~~V~gl~Sftt 113 (150)
T PLN00061 34 GAIKSLFDPNEKTKSGKKLPKAYLKSAREVVKTLRESLKEDPKDEAKFRRTADAAKESIREYLGNWRGQKTVAEEESYVE 113 (150)
T ss_pred HHHHHhcCccccccccccCchHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHhcCCccccccchHHH
Confidence 558889987777665555565665555555555655655421 1111112222222223333333222111 112222
Q ss_pred -hhhHHHHHHhhccC-CCCCCCCHHHHHHHHHHHhc
Q 014427 311 -HGVLTLLKNWLEPL-PDGSLPNINIRAAILKILTE 344 (425)
Q Consensus 311 -~GiL~vLk~WLePL-PDgSLPnl~IRt~LLkiL~~ 344 (425)
.-.|..|+-.-.-. |...||. .||+.|++-|..
T Consensus 114 MqtALnsLAghYssyGpnrPLPe-~lK~Rll~EL~~ 148 (150)
T PLN00061 114 LEKAIRSLASFYSKAGPSAPLPE-DVKSEILDDLNK 148 (150)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHhc
Confidence 14567788887888 9999997 899999887753
No 18
>KOG3977 consensus Troponin I [Cytoskeleton]
Probab=24.72 E-value=2.1e+02 Score=28.35 Aligned_cols=77 Identities=21% Similarity=0.394 Sum_probs=45.0
Q ss_pred HHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCC-----CCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHH
Q 014427 314 LTLLKNWLEPLPDGSLPNINIRAAILKILTEFP-----IDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLV 388 (425)
Q Consensus 314 L~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LP-----Id~e~~d~rE~Lk~SGLGKVVmfL~K~p~ET~eNKrlA~~LI 388 (425)
-.+|+.-.-|||| +|++.++-.|..+-..|- ++.+.|| |=.-.++...|..........|=
T Consensus 71 qr~LaeR~i~lp~--~d~l~d~g~Lq~ly~~l~arv~~leEEkYD------------i~~~v~qt~~EIndLtikvnDLR 136 (221)
T KOG3977|consen 71 QRYLAERTIPLPD--VDSLDDRGLLQDLYRELHARVDALEEEKYD------------IEAKVTQTETEINDLTIKVNDLR 136 (221)
T ss_pred HHHHHHccCCCCC--CCcccchHHHHHHHHHHHHHHHHHHHhhcc------------hhheeehhhhhHHHHHHHHHHhc
Confidence 3455666678887 788888777666655553 1122221 11112344445555555667777
Q ss_pred HHhhhhhhccCccchh
Q 014427 389 DKWSRPIFNKSTRFED 404 (425)
Q Consensus 389 ~kWSRPI~~~ss~Y~d 404 (425)
.++.||-+.+-+-|.+
T Consensus 137 GKFvkPtLkkVsks~~ 152 (221)
T KOG3977|consen 137 GKFVKPTLKKVSKSAD 152 (221)
T ss_pred ccccCccHHHHHhhhH
Confidence 8888888887666643
No 19
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.07 E-value=2.5e+02 Score=25.33 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=41.5
Q ss_pred HHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCC
Q 014427 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFP 346 (425)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LP 346 (425)
++.-|.+|..++.-| -..+|..+.+..+|+.|..=+.+ -++..|+..+|.+|...-
T Consensus 58 ql~AL~LLe~~vkNC-G~~fh~evas~~fl~~l~~l~~~-----~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 58 QLYALLLLESCVKNC-GTHFHDEVASREFMDELKDLIKT-----TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHHHHC-CHHHHHHHhhHHHHHHHHHHHcc-----cCCHHHHHHHHHHHHHHH
Confidence 344455566555543 35678888899999999988876 567899999999998763
No 20
>PLN02777 photosystem I P subunit (PSI-P)
Probab=23.71 E-value=3.2e+02 Score=26.32 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=60.7
Q ss_pred hhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHh
Q 014427 290 KKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMF 369 (425)
Q Consensus 290 kmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~Lk~SGLGKVVmf 369 (425)
.++..|.+..-+..=.-.++--++...|+.| |-..+|..|..+|+-. ..|.=-|||-...|
T Consensus 78 ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~-------------v~~~VL~AId~lPLlP------~lLELVGigYs~WF 138 (167)
T PLN02777 78 EIVKTVQEAWDKVEDKYAVSSLAFAGVVALW-------------GSAGMISAIDRLPLVP------GVLELVGIGYTGWF 138 (167)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHH-------------HHHHHHHHHhcccccc------chHHHhhhhhhhhh
Confidence 5555666666666666667778888999999 6789999999999844 36888899999999
Q ss_pred hhcCchhcHHHHHHHHHHHHHhhhhhhc
Q 014427 370 LSKSDEETTSNRKLAKDLVDKWSRPIFN 397 (425)
Q Consensus 370 L~K~p~ET~eNKrlA~~LI~kWSRPI~~ 397 (425)
.+++=--.+.=+.+..+ |+....-|+|
T Consensus 139 ~yRyLLfke~ReeL~~k-i~~lk~~IlG 165 (167)
T PLN02777 139 AYKNLVFKPDREALIEK-IKDTYKEIIG 165 (167)
T ss_pred hhhHhcCcccHHHHHHH-HHHHHHHhhC
Confidence 88654333333334444 4444444455
No 21
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.38 E-value=1.9e+02 Score=20.01 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=30.8
Q ss_pred hHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 014427 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (425)
Q Consensus 303 ~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (425)
.....+++.|++..|-.-|. -++..|++..+-+|.+|
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~------~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLK------SPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTT------SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHc------CCCHHHHHHHHHHHHHH
Confidence 45678999999999999888 57789999988888765
Done!