Query 014429
Match_columns 424
No_of_seqs 78 out of 80
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09737 Det1: De-etiolated pr 100.0 4E-105 1E-109 812.2 25.3 277 121-416 1-286 (407)
2 KOG2558 Negative regulator of 100.0 1.2E-91 2.7E-96 707.0 16.5 396 2-424 7-424 (532)
3 KOG2558 Negative regulator of 99.8 4.4E-22 9.6E-27 202.9 5.2 249 1-255 1-251 (532)
4 KOG0275 Conserved WD40 repeat- 93.9 0.33 7.1E-06 50.3 9.2 25 52-77 219-243 (508)
5 PRK11028 6-phosphogluconolacto 93.0 2.1 4.6E-05 42.1 13.1 128 53-228 86-219 (330)
6 KOG1446 Histone H3 (Lys4) meth 91.7 0.87 1.9E-05 46.5 8.7 77 50-174 191-267 (311)
7 PF10282 Lactonase: Lactonase, 91.2 3.6 7.8E-05 41.5 12.7 129 53-224 198-332 (345)
8 PRK11028 6-phosphogluconolacto 87.7 20 0.00043 35.2 14.6 25 53-77 181-205 (330)
9 TIGR03866 PQQ_ABC_repeats PQQ- 87.2 24 0.00052 32.6 14.1 80 124-230 212-293 (300)
10 PF05935 Arylsulfotrans: Aryls 86.1 8.3 0.00018 41.2 11.7 106 110-228 182-311 (477)
11 COG2706 3-carboxymuconate cycl 85.8 36 0.00078 35.7 15.6 166 45-224 143-331 (346)
12 PF10282 Lactonase: Lactonase, 85.0 7.9 0.00017 39.0 10.4 82 53-177 251-332 (345)
13 TIGR03866 PQQ_ABC_repeats PQQ- 83.8 33 0.00072 31.7 13.3 85 123-228 161-249 (300)
14 PF02239 Cytochrom_D1: Cytochr 79.2 13 0.00029 38.5 9.7 29 48-77 38-66 (369)
15 PF08662 eIF2A: Eukaryotic tra 78.5 3.4 7.3E-05 38.7 4.7 38 41-78 138-180 (194)
16 KOG0315 G-protein beta subunit 76.9 6.9 0.00015 39.6 6.5 61 52-141 221-281 (311)
17 PF08662 eIF2A: Eukaryotic tra 75.1 7.8 0.00017 36.2 6.2 41 123-179 148-188 (194)
18 KOG2394 WD40 protein DMR-N9 [G 75.1 3.4 7.5E-05 45.3 4.2 51 53-119 297-347 (636)
19 PF07676 PD40: WD40-like Beta 73.1 4.5 9.7E-05 27.8 3.1 25 50-74 12-38 (39)
20 KOG0293 WD40 repeat-containing 72.0 44 0.00096 36.1 11.3 158 36-227 212-375 (519)
21 KOG0293 WD40 repeat-containing 70.4 19 0.00041 38.8 8.1 120 43-223 351-477 (519)
22 TIGR02658 TTQ_MADH_Hv methylam 70.3 30 0.00064 36.1 9.6 86 48-179 49-146 (352)
23 COG3490 Uncharacterized protei 69.0 13 0.00028 38.5 6.4 95 53-182 120-222 (366)
24 KOG1063 RNA polymerase II elon 68.5 3.1 6.7E-05 46.7 2.1 34 35-77 569-602 (764)
25 KOG0266 WD40 repeat-containing 68.5 52 0.0011 34.8 11.1 117 49-221 206-323 (456)
26 COG4946 Uncharacterized protei 67.1 1.3E+02 0.0029 33.2 13.7 137 26-227 339-488 (668)
27 PRK03629 tolB translocation pr 65.6 71 0.0015 33.4 11.4 28 50-77 290-317 (429)
28 KOG2321 WD40 repeat protein [G 64.7 15 0.00033 40.8 6.4 94 43-140 47-156 (703)
29 PRK04922 tolB translocation pr 64.2 1E+02 0.0022 32.0 12.2 32 125-174 342-373 (433)
30 PRK04922 tolB translocation pr 63.2 97 0.0021 32.2 11.8 76 125-223 298-375 (433)
31 TIGR02800 propeller_TolB tol-p 62.8 1.1E+02 0.0025 30.7 11.9 33 125-175 240-272 (417)
32 PRK04792 tolB translocation pr 61.5 1.2E+02 0.0025 32.1 12.2 73 125-222 312-388 (448)
33 cd00200 WD40 WD40 domain, foun 58.6 1.3E+02 0.0027 26.4 13.8 26 51-77 14-39 (289)
34 COG2706 3-carboxymuconate cycl 55.3 68 0.0015 33.7 8.9 82 51-175 248-329 (346)
35 PRK04043 tolB translocation pr 53.5 1.1E+02 0.0024 32.3 10.3 29 49-77 190-219 (419)
36 KOG0973 Histone transcription 52.3 15 0.00033 42.8 4.0 25 52-77 75-99 (942)
37 TIGR02800 propeller_TolB tol-p 49.6 2.8E+02 0.0062 27.9 12.3 26 52-77 283-308 (417)
38 PF02239 Cytochrom_D1: Cytochr 48.7 50 0.0011 34.2 6.8 25 53-77 84-108 (369)
39 PF12894 Apc4_WD40: Anaphase-p 47.6 34 0.00075 25.5 4.0 29 49-78 14-42 (47)
40 PF04053 Coatomer_WDAD: Coatom 45.6 1.3E+02 0.0027 32.4 9.4 154 36-234 23-207 (443)
41 PTZ00420 coronin; Provisional 44.7 2.9E+02 0.0064 30.8 12.3 28 50-77 129-156 (568)
42 KOG0266 WD40 repeat-containing 43.9 2.4E+02 0.0053 29.8 11.2 142 49-216 249-410 (456)
43 PF02897 Peptidase_S9_N: Proly 43.8 1.1E+02 0.0025 31.1 8.5 44 118-177 123-166 (414)
44 KOG2315 Predicted translation 43.7 29 0.00062 38.4 4.2 38 41-78 349-391 (566)
45 KOG1539 WD repeat protein [Gen 43.2 61 0.0013 37.6 6.8 63 125-212 583-645 (910)
46 KOG0306 WD40-repeat-containing 43.2 96 0.0021 35.9 8.2 107 53-223 461-567 (888)
47 PF09826 Beta_propel: Beta pro 42.9 1E+02 0.0022 33.8 8.4 64 162-231 32-134 (521)
48 KOG0275 Conserved WD40 repeat- 38.9 1.7E+02 0.0037 31.0 8.7 133 53-202 355-497 (508)
49 PF09783 Vac_ImportDeg: Vacuol 38.3 57 0.0012 31.0 4.9 67 307-373 82-166 (176)
50 TIGR02658 TTQ_MADH_Hv methylam 37.0 1.6E+02 0.0035 30.7 8.4 47 125-182 52-98 (352)
51 PF10584 Proteasome_A_N: Prote 36.2 14 0.0003 24.2 0.3 11 50-60 4-14 (23)
52 PF10313 DUF2415: Uncharacteri 35.1 55 0.0012 24.5 3.3 27 51-77 5-33 (43)
53 KOG2919 Guanine nucleotide-bin 35.0 2.2E+02 0.0048 30.2 8.8 144 44-225 45-197 (406)
54 PRK02889 tolB translocation pr 34.1 95 0.002 32.3 6.2 24 53-76 334-357 (427)
55 KOG2111 Uncharacterized conser 32.7 1.1E+02 0.0023 32.2 6.1 71 43-118 223-296 (346)
56 KOG2111 Uncharacterized conser 32.4 1E+02 0.0022 32.3 5.8 49 162-217 205-258 (346)
57 KOG0318 WD40 repeat stress pro 30.8 52 0.0011 36.4 3.7 25 53-80 197-221 (603)
58 PF00400 WD40: WD domain, G-be 30.6 42 0.00092 22.2 2.0 23 51-74 16-38 (39)
59 KOG0283 WD40 repeat-containing 30.3 28 0.00061 39.6 1.7 29 49-78 270-298 (712)
60 PF06433 Me-amine-dh_H: Methyl 29.7 2E+02 0.0044 30.2 7.7 92 121-241 97-190 (342)
61 KOG1446 Histone H3 (Lys4) meth 29.7 6.7E+02 0.014 26.2 13.8 139 36-224 131-271 (311)
62 KOG0263 Transcription initiati 29.6 2.1E+02 0.0046 32.8 8.2 97 48-173 453-569 (707)
63 KOG2096 WD40 repeat protein [G 29.2 68 0.0015 33.8 4.1 25 52-77 92-116 (420)
64 PF13360 PQQ_2: PQQ-like domai 27.3 2.5E+02 0.0055 25.5 7.2 22 160-181 131-152 (238)
65 KOG0771 Prolactin regulatory e 26.5 54 0.0012 35.0 2.9 23 53-77 193-215 (398)
66 PF14583 Pectate_lyase22: Olig 26.0 68 0.0015 34.1 3.5 31 126-174 43-73 (386)
67 KOG0291 WD40-repeat-containing 25.5 2.4E+02 0.0051 32.9 7.7 96 19-137 64-164 (893)
68 KOG0283 WD40 repeat-containing 23.4 77 0.0017 36.2 3.5 26 53-79 553-578 (712)
69 KOG0284 Polyadenylation factor 22.9 72 0.0016 34.4 3.0 25 52-77 270-294 (464)
70 COG0823 TolB Periplasmic compo 21.7 1E+02 0.0022 32.9 3.8 139 28-216 218-359 (425)
71 KOG0295 WD40 repeat-containing 21.7 85 0.0019 33.4 3.2 35 42-77 319-364 (406)
72 KOG1407 WD40 repeat protein [F 21.1 66 0.0014 33.0 2.2 20 48-67 191-210 (313)
73 PF00930 DPPIV_N: Dipeptidyl p 20.9 51 0.0011 33.4 1.4 28 51-78 105-132 (353)
74 KOG4497 Uncharacterized conser 20.9 75 0.0016 33.7 2.6 22 51-74 13-34 (447)
75 KOG1273 WD40 repeat protein [G 20.7 85 0.0018 33.1 2.9 26 52-77 255-280 (405)
76 TIGR02276 beta_rpt_yvtn 40-res 20.2 1.5E+02 0.0033 19.9 3.3 22 56-77 1-22 (42)
No 1
>PF09737 Det1: De-etiolated protein 1 Det1; InterPro: IPR019138 This entry represents Det1 family proteins []. Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), is a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function [].
Probab=100.00 E-value=4.4e-105 Score=812.19 Aligned_cols=277 Identities=52% Similarity=0.851 Sum_probs=255.2
Q ss_pred eeeeEEecCceEEEEEeeccccCCCCC-------CCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceee
Q 014429 121 KDFFLSMEGNQFGLFATSTAQIHDAPT-------TGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVF 193 (424)
Q Consensus 121 refsLft~dgryvivasa~~~~~~~~~-------~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~ 193 (424)
||||||||||||||||||+++++++++ +||+++|+|++|+||||||||+||+|||+++|++|+|+||||||||
T Consensus 1 refsLft~dgryvivasat~~~~~~~~~~~d~~~~~eav~~~~~lE~~tfhlVdL~~G~v~D~~~f~~D~I~LsHn~Gv~ 80 (407)
T PF09737_consen 1 REFSLFTEDGRYVIVASATAVPEDPPPRFYDIYRNNEAVSPVPPLEDYTFHLVDLHDGVVCDRRTFKNDKIHLSHNQGVY 80 (407)
T ss_pred CceEEEecCCCEEEEEecccCCCCCCchhhhhhhcCCCcCCCCChhhEEEEEEEccCCcEecceEecCcEEEeccCcceE
Confidence 899999999999999999999776665 9999999999999999999999999999999999999999999999
Q ss_pred eecceeeeeeeceeEEEEEEEccCCeEEEeeeeCCccCcchHHHHhhccchhhhcccccCCCCCCCCCCCCCCCCCCCCc
Q 014429 194 LYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDS 273 (424)
Q Consensus 194 Ly~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG~fc~eDD~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (424)
||+|+|||||+||||||||||+++|+||+||+|||||+||||++++++.+... .. .....+| ++++
T Consensus 81 Ly~dlLaILS~q~QtIhi~qI~~~G~fv~vr~IG~~c~eDDel~l~~~~~~~~-~~------------~~~~~~~-~~~p 146 (407)
T PF09737_consen 81 LYGDLLAILSLQHQTIHIFQIRPDGRFVDVRTIGRFCREDDELFLSSQSQAHE-RD------------QNNLDRP-FREP 146 (407)
T ss_pred EecchHHHHhhhheEEEEEEEcCCCEEEEeEEECCCcCCcHHHHhhccccccc-cc------------ccccccc-cccc
Confidence 99999999999999999999999999999999999999999999999876310 00 0111234 6688
Q ss_pred ccchhhhHHHHHhhccccccccchHHHHHHHHHHHhhchHHHhhhhhhhhhhccCCeeeEeecccccccccCC--CCCce
Q 014429 274 FLSGIKQRLLSFIFQGMWNEETDQAMRVQSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNV--DHHPA 351 (424)
Q Consensus 274 ~i~giKqRlLsfLyr~a~~~~~~~~~~~~~l~~~Fy~~F~~~~~L~MWKmQlLD~~hLLIky~s~D~~~~r~~--~~~~s 351 (424)
+||||||||||||||+|++++++++ +++| +||++||+|++||||||||||++||||||++||++++|.+ ++||+
T Consensus 147 ~i~~iKqRlLsfLyr~~~~~~~~~~---~~~r-~Fy~~F~~~~~L~MWKmQlLD~~hLLIky~s~D~~~~r~~d~~~~~s 222 (407)
T PF09737_consen 147 FINGIKQRLLSFLYRRAWRESSDPA---DRLR-RFYFNFDQYRSLRMWKMQLLDEDHLLIKYGSEDVVTLRVSDPNSQPS 222 (407)
T ss_pred cccchhHHhHHHHHhhhhhcCCcch---hhHH-HHHHHHHHHHHHHhhhhhhcchhheeeeeccccceeeccCCCCCCce
Confidence 9999999999999999987777774 4457 9999999999999999999999999999999999999954 46999
Q ss_pred EEEEEeeccceEEEEEcCChHHHHHHHHHhhhccccccCCCCCcccccCCCccHHHHHHHHHHHh
Q 014429 352 FFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKN 416 (424)
Q Consensus 352 ffvvYnm~t~eVl~vyen~S~eLl~lfe~f~d~fr~~~~~~~~~~f~~s~snn~~ar~~~~r~k~ 416 (424)
|||||||+||||||||||+|+|||+|||||||+|||+++++++ +|+||+|||+|||+++||+|.
T Consensus 223 ffvvYn~~t~eV~~vyen~S~eLl~l~e~f~d~f~~~~~~~~~-~f~~s~s~n~~a~~~~~~~k~ 286 (407)
T PF09737_consen 223 FFVVYNMETTEVLGVYENSSEELLKLFEQFCDHFRNAPLNSPN-NFRSSPSNNIYARPQHRRFKQ 286 (407)
T ss_pred EEEEEeeccceEEEEEcCChHHHHHHHHHHHHHhhcccccccc-CCccCCCCChhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999985 999999999999999999994
No 2
>KOG2558 consensus Negative regulator of histones [Transcription]
Probab=100.00 E-value=1.2e-91 Score=706.97 Aligned_cols=396 Identities=22% Similarity=0.188 Sum_probs=329.6
Q ss_pred CcchhHHHHHhhhhccCCCCCCccccccccccccCCCeeEeeecCCCce-------eeeeCCCCCeEEEeeCCCceEEEE
Q 014429 2 FRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHS-------FRKFTDDGQYLISFSRNHQDLIVY 74 (424)
Q Consensus 2 ~~~~Nlv~rL~~Re~~~~~pgt~~~~~R~FYqni~Pn~Tv~~Ve~P~~~-------lRKFTpDG~yLIaFS~dq~sL~vY 74 (424)
++++|++|.+|+|+.|+. |++|++.|.|.++.+|++||.++++|+|+ +|||||||+.|++|++++.++-+|
T Consensus 7 ~~~~v~~rl~r~r~sg~~--v~~~~~~~~~l~~~~~~y~v~~p~~~~~~~t~~~~~lr~F~~~~~~l~~~~~~~~~~~~~ 84 (532)
T KOG2558|consen 7 LQSQNLVHLLQNRESGYT--VGQQPGRMPLLAYERLFYKCITPCLTIDSITIPPIYLRKFTPDGRKLLAFSQDQRSLLIY 84 (532)
T ss_pred hhHHHHHHHHhcCCCCCc--cccCcceeeecccccccceeeccccCchhhccCCcceeeecCCchhheeechhhhcceee
Confidence 357888888999997775 88998866666666666666666655555 555555555555555555555555
Q ss_pred eecCCCCCcCcccc-----cCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCceEEEEEeeccccC-CCCC-
Q 014429 75 RPMWLSFSCKEEDC-----CRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIH-DAPT- 147 (424)
Q Consensus 75 ry~g~~~~~~~~e~-----~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dgryvivasa~~~~~-~~~~- 147 (424)
.|-|. +|.+++. |.-...+++..|+++|.+.+..+++..++.++++|+++|.+++.++++++.+.+. +.|+
T Consensus 85 ~~~~~--~~~~~~~l~~~~D~~s~~~~s~~~~~~~~li~~~~f~~~~t~~~~~~~~~t~~~h~~~s~s~~~~p~~p~~~~ 162 (532)
T KOG2558|consen 85 SYGGS--SCAAVGELIRQADVGSGECFSSQDTILKSRIFERLFPTKETLNLCQGDFGLYYLHREFSVFLEEGRYAMLAAM 162 (532)
T ss_pred ccCCc--cccchhhhhhcccccceEEeehhHHHHHHHHHHHhcccchhhhccccccchhhhhhhccchhhhCCCCCCCce
Confidence 55432 2222222 2233467788899999999999999999999999999999999999998888743 3331
Q ss_pred -----CCCCCcC--CCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeeeecceeeeeeeceeEEEEEEEccCCeE
Q 014429 148 -----TGRAIQG--VPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNL 220 (424)
Q Consensus 148 -----~ne~v~~--~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly~dlLAILS~q~QtIhi~qI~~~G~f 220 (424)
+.+...+ .|+++++ +++++.|+.||.+.|++|+..|+||+|++++++.++|++++. |++++.+.|++
T Consensus 163 ~~v~~~~~~d~~v~~~~lfd~---~~a~~~g~fl~d~~l~~~~~rl~~~~~l~v~~~~h~I~~~~~---~v~~~~~~~~~ 236 (532)
T KOG2558|consen 163 TVVRGALPVDDYVRYPDLFDK---VDAFSYVFFLVDLKLGVVTDRLILPNDSIVIAHNHGISVFGS---TVMMMSRLHQC 236 (532)
T ss_pred EEEEeccccCCcccCchHHhh---hhhheeeEEEecceeeeeEEEEecccccEEEecCceeeeeeh---hhhhcccccce
Confidence 3444444 4579998 999999999999999999999999999999999999999996 99999999999
Q ss_pred EEeeeeCCccCcchHHHHhhccchhhhcccccCCCCCCCCCCCCCCCCCCCCcccchhhhHHHHHhhccccccccchHHH
Q 014429 221 VDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQAMR 300 (424)
Q Consensus 221 v~vrtIG~fc~eDD~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~giKqRlLsfLyr~a~~~~~~~~~~ 300 (424)
+.|++||++|+++|++..++...... ++.+...++|.+.+++||||||||||||||+||++++++
T Consensus 237 v~v~~v~~~k~~qq~l~gs~~~d~~e------------~~~~~~~~~p~~~~~fi~~iKqRlLsfl~R~i~~~~s~~--- 301 (532)
T KOG2558|consen 237 VYVYWVNDGKFHQQETIGPRPRDFIE------------KATTDFDNLPATTVLFITHIKQRLLSFLYRKINDKSSNP--- 301 (532)
T ss_pred eEEEEecCCchhhhhccCCCCCchhh------------hcccccccCCccccchhhHHHHHHHHHHHHHHhccCCCh---
Confidence 99999999999999887776644331 233456678877799999999999999999999888877
Q ss_pred HHHHHHHHhhchHHHhhhhhhhhhhccCCeeeEeecccccccccCCC-CCceEEEEEeeccceEEEEEcCChHHHHHHHH
Q 014429 301 VQSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVD-HHPAFFAVYNMETTEVVAFYQNSAEELYFLFE 379 (424)
Q Consensus 301 ~~~l~~~Fy~~F~~~~~L~MWKmQlLD~~hLLIky~s~D~~~~r~~~-~~~sffvvYnm~t~eVl~vyen~S~eLl~lfe 379 (424)
+.+||+||+|||+|++||||||||||++||+|||+|+||++.|..| +|++|||||||+||||||||+|+|++||+|||
T Consensus 302 -~~~kk~Fy~~F~~~~~limwKmqlld~~hL~IKy~s~dg~~tr~~d~s~~~ffvvYnm~tteVVavy~n~s~~LlqLfe 380 (532)
T KOG2558|consen 302 -TESKKSFYKNFEYIEHLIMWKMQLLDNEHLMIKYESPDGTDTRPMDTSPRRFFVVYNMTTTEVVAVYPNYSVNLLQLFE 380 (532)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcccceeEEEeeCCCCcccccCCCCCccEEEEEEcceeEEEEEcccchHHHHHHHH
Confidence 5577799999999999999999999999999999999999999888 79999999999999999999999999999999
Q ss_pred HhhhccccccCCCCCcccccCCCccHHHHHHHHHHHhcCCCCCCC
Q 014429 380 KFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQV 424 (424)
Q Consensus 380 ~f~d~fr~~~~~~~~~~f~~s~snn~~ar~~~~r~k~~~~~~~~~ 424 (424)
||||+|+|++..+- ++|+||||||.||+++++++|+|.|+++|+
T Consensus 381 qF~D~f~n~~s~~f-~~fp~s~s~n~~a~~~~~~~k~K~~~~~~~ 424 (532)
T KOG2558|consen 381 QFNDYFSNDRSLQF-GDFPSSPSHNFLAHTFADSNKSKVSVDRHT 424 (532)
T ss_pred HHHHhhcccccccc-ccCcccccccHHHHHHHHhhhccccchHHH
Confidence 99999999999997 999999999999999999999999998763
No 3
>KOG2558 consensus Negative regulator of histones [Transcription]
Probab=99.85 E-value=4.4e-22 Score=202.90 Aligned_cols=249 Identities=12% Similarity=-0.033 Sum_probs=222.5
Q ss_pred CCcchhHHHHHhhhhccCCCCCCccccccccccccCCCeeEeeecCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCC
Q 014429 1 MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLS 80 (424)
Q Consensus 1 ~~~~~Nlv~rL~~Re~~~~~pgt~~~~~R~FYqni~Pn~Tv~~Ve~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~ 80 (424)
|..+.|+-.+...|.+..+.||.++.+.+.+|.++.|.++.++|+.|..-+++||-+|=||+-|++|.++|.+|+.-|.+
T Consensus 1 m~~~~~~~~~v~~rl~r~r~sg~~v~~~~~~~~~l~~~~~~y~v~~p~~~~~~~t~~~~~lr~F~~~~~~l~~~~~~~~~ 80 (532)
T KOG2558|consen 1 MAYKKRLQSQNLVHLLQNRESGYTVGQQPGRMPLLAYERLFYKCITPCLTIDSITIPPIYLRKFTPDGRKLLAFSQDQRS 80 (532)
T ss_pred CCcccchhHHHHHHHHhcCCCCCccccCcceeeecccccccceeeccccCchhhccCCcceeeecCCchhheeechhhhc
Confidence 67788999999999999999999999999999999999999999999999999998888888888888877777766666
Q ss_pred CCcCcccc-cCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCceEEEEEeeccccCCC-CCCCCCCcCCCCc
Q 014429 81 FSCKEEDC-CRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDA-PTTGRAIQGVPFI 158 (424)
Q Consensus 81 ~~~~~~e~-~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dgryvivasa~~~~~~~-~~~ne~v~~~P~l 158 (424)
.+..+++. ...+.+.+++-||.+|...|.++++...+.||+++++.-+.-+....+..++..++. ...+++++..|..
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~D~~s~~~~s~~~~~~~~li~~~~f~~~~t~~~~~~~~~t~~~h~~~s~s~~~~p~~p~~ 160 (532)
T KOG2558|consen 81 LLIYSYGGSSCAAVGELIRQADVGSGECFSSQDTILKSRIFERLFPTKETLNLCQGDFGLYYLHREFSVFLEEGRYAMLA 160 (532)
T ss_pred ceeeccCCccccchhhhhhcccccceEEeehhHHHHHHHHHHHhcccchhhhccccccchhhhhhhccchhhhCCCCCCC
Confidence 55542222 235678899999999999999999999999999999999999999999888885543 3678999999999
Q ss_pred ceeEEEEEEccCceEeeeeeeccceEEeeccceeeeecceeeeeeeceeEEEEEEEccCCeEEEeeeeCCccCcchHHHH
Q 014429 159 EKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFL 238 (424)
Q Consensus 159 e~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG~fc~eDD~l~l 238 (424)
..|+++.-.+.+|.+.|.+.|.. +++||.|+.|++++|+|++++.|.+|-++|.+.|..|.++.| |.++++.+.
T Consensus 161 ~~~~v~~~~~~d~~v~~~~lfd~---~~a~~~g~fl~d~~l~~~~~rl~~~~~l~v~~~~h~I~~~~~---~v~~~~~~~ 234 (532)
T KOG2558|consen 161 AMTVVRGALPVDDYVRYPDLFDK---VDAFSYVFFLVDLKLGVVTDRLILPNDSIVIAHNHGISVFGS---TVMMMSRLH 234 (532)
T ss_pred ceEEEEeccccCCcccCchHHhh---hhhheeeEEEecceeeeeEEEEecccccEEEecCceeeeeeh---hhhhccccc
Confidence 99999999999999999999987 999999999999999999999999999999999999999988 999999999
Q ss_pred hhccchhhhcccccCCC
Q 014429 239 ISNSQSLATSERSRLNP 255 (424)
Q Consensus 239 ~~~~~~~~~~~~~~~~~ 255 (424)
+.....|+...+.+++.
T Consensus 235 ~~v~v~~v~~~k~~qq~ 251 (532)
T KOG2558|consen 235 QCVYVYWVNDGKFHQQE 251 (532)
T ss_pred ceeEEEEecCCchhhhh
Confidence 99999988777766544
No 4
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=93.87 E-value=0.33 Score=50.33 Aligned_cols=25 Identities=36% Similarity=0.487 Sum_probs=22.1
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 52 RKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
-+|||||+||+.=|-|. -+||+.|.
T Consensus 219 A~FSPDgqyLvsgSvDG-FiEVWny~ 243 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDG-FIEVWNYT 243 (508)
T ss_pred eeeCCCCceEeeccccc-eeeeehhc
Confidence 48999999999988775 79999998
No 5
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.98 E-value=2.1 Score=42.06 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=72.7
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCceE
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dgry 132 (424)
-|+|||++|++=+.....|.||+..- . +... .... .+ .+.+. + -.+.+..||++
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~-----~-g~~~---~~~~--~~-------------~~~~~-~-~~~~~~p~g~~ 139 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDK-----D-GIPV---APIQ--II-------------EGLEG-C-HSANIDPDNRT 139 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECC-----C-CCCC---Ccee--ec-------------cCCCc-c-cEeEeCCCCCE
Confidence 47788888887776677777777640 0 0000 0000 00 11111 1 13456789999
Q ss_pred EEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccC-ceEeee--eeeccceEEeeccceeeeecc--eeeeeeecee
Q 014429 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLED-GVVLDE--KVFHNDFINLAHNMGVFLYDD--LLAIVSLRYQ 207 (424)
Q Consensus 133 vivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~-G~v~D~--~~f~~D~I~LsHN~Gv~Ly~d--lLAILS~q~Q 207 (424)
++|+.. .+=++.++|+.+ |.+... ...+... =++-.++-+..| .|.|.+....
T Consensus 140 l~v~~~--------------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 140 LWVPCL--------------------KEDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred EEEeeC--------------------CCCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCCCCEEEEEecCCC
Confidence 988642 112577888866 544321 1111110 122335566666 7778888889
Q ss_pred EEEEEEEcc-CCeEEEeeeeCC
Q 014429 208 TIHILQVRD-LGNLVDVRTIGS 228 (424)
Q Consensus 208 tIhi~qI~~-~G~fv~vrtIG~ 228 (424)
+|.+|.+.+ .|.+..+.+++.
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEec
Confidence 999999975 578877777764
No 6
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.87 Score=46.52 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=50.1
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecC
Q 014429 50 SFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEG 129 (424)
Q Consensus 50 ~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~d 129 (424)
-=-||||||++++-=..+..-..|=.|.|- .+.+.+..+++..+.=| +-||.|
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--------------------------~~~tfs~~~~~~~~~~~-a~ftPd 243 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGT--------------------------VKSTFSGYPNAGNLPLS-ATFTPD 243 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCc--------------------------EeeeEeeccCCCCccee-EEECCC
Confidence 345899999998876665555666677752 23333333443333333 347899
Q ss_pred ceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEe
Q 014429 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL 174 (424)
Q Consensus 130 gryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~ 174 (424)
|.||+.++- |=++|++++++|...
T Consensus 244 s~Fvl~gs~---------------------dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 244 SKFVLSGSD---------------------DGTIHVWNLETGKKV 267 (311)
T ss_pred CcEEEEecC---------------------CCcEEEEEcCCCcEe
Confidence 999999742 225999999999543
No 7
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.24 E-value=3.6 Score=41.46 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=81.8
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCC---eeeeeeeeEEecC
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCN---ELICKDFFLSMEG 129 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~---e~L~refsLft~d 129 (424)
.|+|||+++........+|.+|++....-. |+..-++...+.+ +...-|.. +..|
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~---------------------~~~~~~~~~~~~~~~~~~~~~~i~-ispd 255 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGS---------------------LTEIQTISTLPEGFTGENAPAEIA-ISPD 255 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTE---------------------EEEEEEEESCETTSCSSSSEEEEE-E-TT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCc---------------------eeEEEEeeeccccccccCCceeEE-EecC
Confidence 499999999999999999999999721111 1222222222111 22333333 4689
Q ss_pred ceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeee--ecceeeeeeecee
Q 014429 130 NQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFL--YDDLLAIVSLRYQ 207 (424)
Q Consensus 130 gryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L--y~dlLAILS~q~Q 207 (424)
|||+.|+.. .-..|+.+=+|-++|.+.--..++..- .+-.++.+ -++.|+|..-..-
T Consensus 256 g~~lyvsnr------------------~~~sI~vf~~d~~~g~l~~~~~~~~~G---~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 256 GRFLYVSNR------------------GSNSISVFDLDPATGTLTLVQTVPTGG---KFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp SSEEEEEEC------------------TTTEEEEEEECTTTTTEEEEEEEEESS---SSEEEEEE-TTSSEEEEEETTTT
T ss_pred CCEEEEEec------------------cCCEEEEEEEecCCCceEEEEEEeCCC---CCccEEEEeCCCCEEEEEecCCC
Confidence 999999622 234566666777888775444433311 11234555 7899999999999
Q ss_pred EEEEEEEc-cCCeEEEee
Q 014429 208 TIHILQVR-DLGNLVDVR 224 (424)
Q Consensus 208 tIhi~qI~-~~G~fv~vr 224 (424)
+|.+|+|. +.|++..+.
T Consensus 315 ~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCcEEEec
Confidence 99999995 578887765
No 8
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=87.66 E-value=20 Score=35.22 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=23.4
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
.|+|||++|.+-+....+|.+|++.
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEe
Confidence 8999999999999888999999996
No 9
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.16 E-value=24 Score=32.61 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=47.4
Q ss_pred eEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeeee--cceeee
Q 014429 124 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAI 201 (424)
Q Consensus 124 sLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly--~dlLAI 201 (424)
..|..||++++++.+. +=+++++|+++|++........ .+ .++... +..|++
T Consensus 212 i~~s~dg~~~~~~~~~--------------------~~~i~v~d~~~~~~~~~~~~~~-~~-----~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 212 IKLTKDGKTAFVALGP--------------------ANRVAVVDAKTYEVLDYLLVGQ-RV-----WQLAFTPDEKYLLT 265 (300)
T ss_pred eEECCCCCEEEEEcCC--------------------CCeEEEEECCCCcEEEEEEeCC-Cc-----ceEEECCCCCEEEE
Confidence 3467889987775311 0147899999998865432111 11 123332 224444
Q ss_pred eeeceeEEEEEEEccCCeEEEeeeeCCcc
Q 014429 202 VSLRYQTIHILQVRDLGNLVDVRTIGSFC 230 (424)
Q Consensus 202 LS~q~QtIhi~qI~~~G~fv~vrtIG~fc 230 (424)
-+-..-+|.|+.+. +|+.+..-.+|.-+
T Consensus 266 ~~~~~~~i~v~d~~-~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 266 TNGVSNDVSVIDVA-ALKVIKSIKVGRLP 293 (300)
T ss_pred EcCCCCeEEEEECC-CCcEEEEEEccccc
Confidence 44446789999988 48887777788633
No 10
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.12 E-value=8.3 Score=41.24 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=57.4
Q ss_pred EEcCCCCeeeeeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeecc--------
Q 014429 110 VTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHN-------- 181 (424)
Q Consensus 110 ~~la~~~e~L~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~-------- 181 (424)
..++.+...+|-|+. .+++|.++++++.+..... + .....++|. +..|| .+|.|...-.+..
T Consensus 182 ~~l~~~~~~~HHD~~-~l~nGn~L~l~~~~~~~~~-~------~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 182 YDLPGGYYDFHHDID-ELPNGNLLILASETKYVDE-D------KDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp EE--TTEE-B-S-EE-E-TTS-EEEEEEETTEE-T-S-------EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--T
T ss_pred eecCCcccccccccE-ECCCCCEEEEEeecccccC-C------CCccEecCE-EEEEC-CCCCEEEEEehHHhCCccccc
Confidence 344444456777776 6689999999876554221 0 112246676 88888 9998887755443
Q ss_pred --------------ceEEeeccceeeeec-ceeeeeeecee-EEEEEEEccCCeEEEeeeeCC
Q 014429 182 --------------DFINLAHNMGVFLYD-DLLAIVSLRYQ-TIHILQVRDLGNLVDVRTIGS 228 (424)
Q Consensus 182 --------------D~I~LsHN~Gv~Ly~-dlLAILS~q~Q-tIhi~qI~~~G~fv~vrtIG~ 228 (424)
....+.|..+|..-. |=-.|+|.||| +|-...- .+|+.+- .+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~-~t~~i~W--ilg~ 311 (477)
T PF05935_consen 252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY-RTGKIKW--ILGP 311 (477)
T ss_dssp TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE--TTS-EEE--EES-
T ss_pred ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC-CCCcEEE--EeCC
Confidence 233457888888766 66778999999 7766663 4676543 4666
No 11
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.82 E-value=36 Score=35.65 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=85.9
Q ss_pred cCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCccccc-CCCCCccccchhhhhheeeEEEcCCCCeeeeeee
Q 014429 45 ECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCC-RHDLPPKAKRFESFFTQLYSVTLASCNELICKDF 123 (424)
Q Consensus 45 e~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~-~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~ref 123 (424)
|.|-|..-+|||||+||++-.--.-.+.+|++. -+...++++.. ....-.|--+|--==+-.|+++= |+-+.
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E------L~stV 215 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE------LNSTV 215 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEEec------cCCEE
Confidence 466688999999999999999999999999998 33222211111 11122232333322222222221 11111
Q ss_pred eEEec---CceEEEEEeeccccCCCC-CCC-CCCc----------CCCCcceeEEEEEEccCceEee------eeeeccc
Q 014429 124 FLSME---GNQFGLFATSTAQIHDAP-TTG-RAIQ----------GVPFIEKITFHLLRLEDGVVLD------EKVFHND 182 (424)
Q Consensus 124 sLft~---dgryvivasa~~~~~~~~-~~n-e~v~----------~~P~le~ytfhlVdL~~G~v~D------~~~f~~D 182 (424)
.++-- .|++=-+=+....+++=. .+. .+|. .+.-...|+.+=||=.+|++.= .-.++-|
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~ 295 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD 295 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc
Confidence 11110 122211111111111100 000 1111 1334678888889988886431 1223444
Q ss_pred eEEeeccceeeeecceeeeeeeceeEEEEEEEcc-CCeEEEee
Q 014429 183 FINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRD-LGNLVDVR 224 (424)
Q Consensus 183 ~I~LsHN~Gv~Ly~dlLAILS~q~QtIhi~qI~~-~G~fv~vr 224 (424)
+-.=+ -+++|++..=..=+|++|.+.+ .|++.+..
T Consensus 296 F~i~~-------~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 296 FNINP-------SGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred ceeCC-------CCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 43333 2678888888888999999964 88887654
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.00 E-value=7.9 Score=39.02 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=52.5
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCceE
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dgry 132 (424)
++||||++|.+=.+...+|.+|+-...+ ..+ ...-.+..+|.. =|+|.+ ..||+|
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~------------g~l-----------~~~~~~~~~G~~-Pr~~~~-s~~g~~ 305 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPAT------------GTL-----------TLVQTVPTGGKF-PRHFAF-SPDGRY 305 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTT------------TTE-----------EEEEEEEESSSS-EEEEEE--TTSSE
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCC------------Cce-----------EEEEEEeCCCCC-ccEEEE-eCCCCE
Confidence 5999999999999999999999984111 011 111112223332 466665 889999
Q ss_pred EEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeee
Q 014429 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 177 (424)
Q Consensus 133 vivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~ 177 (424)
++||. ..=..++++=+|-++|.+.-..
T Consensus 306 l~Va~------------------~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 306 LYVAN------------------QDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEE------------------TTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEe------------------cCCCeEEEEEEeCCCCcEEEec
Confidence 99962 1223567888888999876554
No 13
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=83.77 E-value=33 Score=31.67 Aligned_cols=85 Identities=9% Similarity=0.091 Sum_probs=46.2
Q ss_pred eeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEe--eccceeeee--cce
Q 014429 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINL--AHNMGVFLY--DDL 198 (424)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~L--sHN~Gv~Ly--~dl 198 (424)
..-|..||+++++++... =+++++|+++|.+..+..++..-+.. ....|+.+. +..
T Consensus 161 ~~~~s~dg~~l~~~~~~~--------------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIG--------------------GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred EEEECCCCCEEEEEcCCC--------------------CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 356788999887752211 14888999999887766654321110 012233322 222
Q ss_pred eeeeeeceeEEEEEEEccCCeEEEeeeeCC
Q 014429 199 LAIVSLRYQTIHILQVRDLGNLVDVRTIGS 228 (424)
Q Consensus 199 LAILS~q~QtIhi~qI~~~G~fv~vrtIG~ 228 (424)
+.+..---.+|+++.+. +|+.+..-..|.
T Consensus 221 ~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~ 249 (300)
T TIGR03866 221 AFVALGPANRVAVVDAK-TYEVLDYLLVGQ 249 (300)
T ss_pred EEEEcCCCCeEEEEECC-CCcEEEEEEeCC
Confidence 22222223578888875 577765444453
No 14
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=79.17 E-value=13 Score=38.45 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=22.1
Q ss_pred CceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 48 DHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 48 ~~~lRKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
++...+|||||||+...++| -.|-++...
T Consensus 38 ~h~~~~~s~Dgr~~yv~~rd-g~vsviD~~ 66 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVANRD-GTVSVIDLA 66 (369)
T ss_dssp EEEEEE-TT-SSEEEEEETT-SEEEEEETT
T ss_pred ceeEEEecCCCCEEEEEcCC-CeEEEEECC
Confidence 46778999999999999987 478887765
No 15
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=78.52 E-value=3.4 Score=38.69 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=29.5
Q ss_pred EeeecCCCceeeeeCCCCCeEEEeeCC-----CceEEEEeecC
Q 014429 41 VYDIECPDHSFRKFTDDGQYLISFSRN-----HQDLIVYRPMW 78 (424)
Q Consensus 41 v~~Ve~P~~~lRKFTpDG~yLIaFS~d-----q~sL~vYry~g 78 (424)
|...+.|.+.---||||||||++-+.. ..-+.||.|.|
T Consensus 138 i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 138 ISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred eeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 444566777888999999999998764 45678888885
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=76.90 E-value=6.9 Score=39.62 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=39.3
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCce
Q 014429 52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ 131 (424)
Q Consensus 52 RKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dgr 131 (424)
++|||||+||.+-|+|++ +.|++-- .||++- ..+ .+++.-+=||. |.-||+
T Consensus 221 C~lSPd~k~lat~ssdkt-v~iwn~~------------------------~~~kle--~~l-~gh~rWvWdc~-FS~dg~ 271 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKT-VKIWNTD------------------------DFFKLE--LVL-TGHQRWVWDCA-FSADGE 271 (311)
T ss_pred EEECCCCcEEEeecCCce-EEEEecC------------------------CceeeE--EEe-ecCCceEEeee-eccCcc
Confidence 479999999999999874 4444322 123332 222 34445666765 455999
Q ss_pred EEEEEeeccc
Q 014429 132 FGLFATSTAQ 141 (424)
Q Consensus 132 yvivasa~~~ 141 (424)
|++-|++-.+
T Consensus 272 YlvTassd~~ 281 (311)
T KOG0315|consen 272 YLVTASSDHT 281 (311)
T ss_pred EEEecCCCCc
Confidence 9999876654
No 17
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=75.12 E-value=7.8 Score=36.23 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=25.9
Q ss_pred eeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeee
Q 014429 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF 179 (424)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f 179 (424)
.+-+-+||||++.|+..+- . . .+-.+-|++. +|.++.+..|
T Consensus 148 ~~~WsPdGr~~~ta~t~~r-~-------------~-~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTSPR-L-------------R-VDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred EEEEcCCCCEEEEEEeccc-e-------------e-ccccEEEEEe-cCeEeEecch
Confidence 3458899999999765431 0 1 2234677776 4777766655
No 18
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=75.10 E-value=3.4 Score=45.29 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=37.5
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeee
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELI 119 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L 119 (424)
-|||||+||.|.|+|. -|.|+.|. . . .+. -++.+||-=+-|+.-.+.|.+|
T Consensus 297 ~FS~DG~~LA~VSqDG-fLRvF~fd----t---~-------eLl-g~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDG-FLRIFDFD----T---Q-------ELL-GVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred eEcCCCceEEEEecCc-eEEEeecc----H---H-------HHH-HHHHhhccceEEEEEcCCccEE
Confidence 5999999999999986 69999997 1 1 111 1688888877777666665544
No 19
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.10 E-value=4.5 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=15.3
Q ss_pred eeeeeCCCCCeEEEeeCCC--ceEEEE
Q 014429 50 SFRKFTDDGQYLISFSRNH--QDLIVY 74 (424)
Q Consensus 50 ~lRKFTpDG~yLIaFS~dq--~sL~vY 74 (424)
.--.|||||++|+=.|.-. ..-.||
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4457999999987555444 444444
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.02 E-value=44 Score=36.09 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCeeEeeec--CCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcC
Q 014429 36 VPSFTVYDIE--CPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLA 113 (424)
Q Consensus 36 ~Pn~Tv~~Ve--~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la 113 (424)
+|+.|.-=++ +-...+-+|||+|+||..=|+|++.++ +.-. -+.-|++++++-=.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taii-w~v~----------------------~d~~~kl~~tlvgh 268 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAII-WIVV----------------------YDVHFKLKKTLVGH 268 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEE-EEEe----------------------cCcceeeeeeeecc
Confidence 4555543222 345789999999999999999988754 2221 01115566554322
Q ss_pred CCCeeeeeeeeEEecCceEEEEEeeccc-cCCCCCCCCCCcCCCC-cceeEEEEEEccCc--eEeeeeeeccceEEeecc
Q 014429 114 SCNELICKDFFLSMEGNQFGLFATSTAQ-IHDAPTTGRAIQGVPF-IEKITFHLLRLEDG--VVLDEKVFHNDFINLAHN 189 (424)
Q Consensus 114 ~~~e~L~refsLft~dgryvivasa~~~-~~~~~~~ne~v~~~P~-le~ytfhlVdL~~G--~v~D~~~f~~D~I~LsHN 189 (424)
+.+ ++ +-++.+|.||++-.+..-. .-+-+.+++...-+|. ++.-.--+.=.-|| -|+..-. +-.|.+.|+
T Consensus 269 ~~~-V~---yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d--r~i~~wdlD 342 (519)
T KOG0293|consen 269 SQP-VS---YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD--RTIIMWDLD 342 (519)
T ss_pred cCc-eE---EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC--CcEEEecCC
Confidence 222 11 4578899999987654443 2112223332222221 00000000000011 0111000 223444444
Q ss_pred ceeeeecceeeeeeeceeEEEEEEEccCCeEEEeeeeC
Q 014429 190 MGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 227 (424)
Q Consensus 190 ~Gv~Ly~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG 227 (424)
.-+ +=+==.++-|+||=..|++||+-+..-+.-
T Consensus 343 gn~-----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 343 GNI-----LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cch-----hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 211 111123445999999999999888776633
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.38 E-value=19 Score=38.80 Aligned_cols=120 Identities=18% Similarity=0.288 Sum_probs=72.1
Q ss_pred eecCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeee
Q 014429 43 DIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKD 122 (424)
Q Consensus 43 ~Ve~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~re 122 (424)
+|+.|-.+=-+-||||+|+++...|++ +.+|... . +-.+.+-++...+.+
T Consensus 351 gvr~~~v~dlait~Dgk~vl~v~~d~~-i~l~~~e--------~--------------------~~dr~lise~~~its- 400 (519)
T KOG0293|consen 351 GVRDPKVHDLAITYDGKYVLLVTVDKK-IRLYNRE--------A--------------------RVDRGLISEEQPITS- 400 (519)
T ss_pred ccccceeEEEEEcCCCcEEEEEecccc-eeeechh--------h--------------------hhhhccccccCceeE-
Confidence 567777777788999999999886653 5555443 0 000011122222222
Q ss_pred eeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeeeecc-----
Q 014429 123 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDD----- 197 (424)
Q Consensus 123 fsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly~d----- 197 (424)
|++ .+||+|+|| +|++=++||+||++-++.-+ +-.|-||-|+-+.
T Consensus 401 ~~i-S~d~k~~Lv---------------------nL~~qei~LWDl~e~~lv~k--------Y~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 401 FSI-SKDGKLALV---------------------NLQDQEIHLWDLEENKLVRK--------YFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred EEE-cCCCcEEEE---------------------EcccCeeEEeecchhhHHHH--------hhcccccceEEEeccCCC
Confidence 333 458999999 56677899999997766554 3467777765432
Q ss_pred --eeeeeeeceeEEEEEEEccCCeEEEe
Q 014429 198 --LLAIVSLRYQTIHILQVRDLGNLVDV 223 (424)
Q Consensus 198 --lLAILS~q~QtIhi~qI~~~G~fv~v 223 (424)
.+..=+-.-=.|||..-. .|+++.+
T Consensus 451 ~~~fiaSGSED~kvyIWhr~-sgkll~~ 477 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRI-SGKLLAV 477 (519)
T ss_pred CcceEEecCCCceEEEEEcc-CCceeEe
Confidence 332223333457887755 4777654
No 22
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=70.31 E-value=30 Score=36.14 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=54.5
Q ss_pred CceeeeeCCCCCeEEEeeC---------CCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCe-
Q 014429 48 DHSFRKFTDDGQYLISFSR---------NHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNE- 117 (424)
Q Consensus 48 ~~~lRKFTpDG~yLIaFS~---------dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e- 117 (424)
|..+ +||||+.|-.=+. +...|.||.-. .. +....+.+...-|
T Consensus 49 P~~~--~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~----t~---------------------~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 49 PNPV--VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ----TH---------------------LPIADIELPEGPRF 101 (352)
T ss_pred Ccee--ECCCCCEEEEEeccccccccCCCCCEEEEEECc----cC---------------------cEEeEEccCCCchh
Confidence 4453 9999999887777 77888888776 11 1233344433323
Q ss_pred --eeeeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeee
Q 014429 118 --LICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF 179 (424)
Q Consensus 118 --~L~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f 179 (424)
--.+..+-++.|||++.|+-.++. =+.-+||+++|++..+..-
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~-------------------~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPS-------------------PAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCC-------------------CEEEEEECCCCcEEEEEeC
Confidence 334556778889999999743321 1356777777777666554
No 23
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.97 E-value=13 Score=38.49 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=54.8
Q ss_pred eeCCCCCeEEEee----CCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEec
Q 014429 53 KFTDDGQYLISFS----RNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSME 128 (424)
Q Consensus 53 KFTpDG~yLIaFS----~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~ 128 (424)
-|||||++|-|=- .+---|=||+.+ -.+.-- +| |+.+=-=-|. ...+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrv-gE------------~~t~GiGpHe--------------v~lm~ 171 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRV-GE------------FSTHGIGPHE--------------VTLMA 171 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc-ccccee-cc------------cccCCcCcce--------------eEEec
Confidence 5899999999844 444457788876 111111 22 2221111122 23467
Q ss_pred CceEEEEEeeccccCC----CCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccc
Q 014429 129 GNQFGLFATSTAQIHD----APTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND 182 (424)
Q Consensus 129 dgryvivasa~~~~~~----~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D 182 (424)
|||-+++|--..-.+| .+-|-++++| ++-|+|-.||.+..+.++..+
T Consensus 172 DGrtlvvanGGIethpdfgR~~lNldsMeP-------Slvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 172 DGRTLVVANGGIETHPDFGRTELNLDSMEP-------SLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred CCcEEEEeCCceecccccCccccchhhcCc-------cEEEEeccccchhhhccCchh
Confidence 8999999643221221 1123344443 588999999999998888766
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=68.51 E-value=3.1 Score=46.67 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=26.0
Q ss_pred cCCCeeEeeecCCCceeeeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 35 IVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 35 i~Pn~Tv~~Ve~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
..=++||.-+ +|||||+||++.|+|- ..-+|.=+
T Consensus 569 ~~HsLTVT~l--------~FSpdg~~LLsvsRDR-t~sl~~~~ 602 (764)
T KOG1063|consen 569 EGHSLTVTRL--------AFSPDGRYLLSVSRDR-TVSLYEVQ 602 (764)
T ss_pred cccceEEEEE--------EECCCCcEEEEeecCc-eEEeeeee
Confidence 3446777754 7999999999999985 46677654
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=68.45 E-value=52 Score=34.79 Aligned_cols=117 Identities=19% Similarity=0.163 Sum_probs=71.3
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEec
Q 014429 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSME 128 (424)
Q Consensus 49 ~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~ 128 (424)
+.=-+|||||+++++-|.| ..|.|++-.-.+... .++. ++.+.. =++-|.+
T Consensus 206 v~~~~fs~d~~~l~s~s~D-~tiriwd~~~~~~~~------------------------~~l~-gH~~~v---~~~~f~p 256 (456)
T KOG0266|consen 206 VSDVAFSPDGSYLLSGSDD-KTLRIWDLKDDGRNL------------------------KTLK-GHSTYV---TSVAFSP 256 (456)
T ss_pred eeeeEECCCCcEEEEecCC-ceEEEeeccCCCeEE------------------------EEec-CCCCce---EEEEecC
Confidence 4445899999999988865 457777763111111 1111 222222 2677888
Q ss_pred CceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEE-eeccceeeeecceeeeeeecee
Q 014429 129 GNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFIN-LAHNMGVFLYDDLLAIVSLRYQ 207 (424)
Q Consensus 129 dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~-LsHN~Gv~Ly~dlLAILS~q~Q 207 (424)
+|+.++-|+.- =|+.++|+.+|...-...-+.|.|. ++++ --+..|+.-|. -|
T Consensus 257 ~g~~i~Sgs~D---------------------~tvriWd~~~~~~~~~l~~hs~~is~~~f~----~d~~~l~s~s~-d~ 310 (456)
T KOG0266|consen 257 DGNLLVSGSDD---------------------GTVRIWDVRTGECVRKLKGHSDGISGLAFS----PDGNLLVSASY-DG 310 (456)
T ss_pred CCCEEEEecCC---------------------CcEEEEeccCCeEEEeeeccCCceEEEEEC----CCCCEEEEcCC-Cc
Confidence 88555554322 2588999999888777777776665 2222 12445555566 79
Q ss_pred EEEEEEEccCCeEE
Q 014429 208 TIHILQVRDLGNLV 221 (424)
Q Consensus 208 tIhi~qI~~~G~fv 221 (424)
+|.|+-+.. |.+.
T Consensus 311 ~i~vwd~~~-~~~~ 323 (456)
T KOG0266|consen 311 TIRVWDLET-GSKL 323 (456)
T ss_pred cEEEEECCC-Ccee
Confidence 999999873 6654
No 26
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=67.14 E-value=1.3e+02 Score=33.23 Aligned_cols=137 Identities=15% Similarity=0.233 Sum_probs=88.8
Q ss_pred ccccccccccCCCeeEeeecCC-CceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhh
Q 014429 26 HCARRFYENIVPSFTVYDIECP-DHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFF 104 (424)
Q Consensus 26 ~~~R~FYqni~Pn~Tv~~Ve~P-~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF 104 (424)
.+...|-++..-+..|- |.+| ..--|++.-|++.++-=..|...|.||.+.| ++. +.++.=+
T Consensus 339 SRGkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-------~e~---------kr~e~~l 401 (668)
T COG4946 339 SRGKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-------GEV---------KRIEKDL 401 (668)
T ss_pred ecCcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC-------ceE---------EEeeCCc
Confidence 34457777766666654 6666 4678899999999999999999999999984 221 2344334
Q ss_pred heeeEEEcCCCCeeeeeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCce--Eeeee-----
Q 014429 105 TQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGV--VLDEK----- 177 (424)
Q Consensus 105 ~~~~~~~la~~~e~L~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~--v~D~~----- 177 (424)
-..+.+-+.+ ||.+++|| | .+..+.+||+.+|. +.|+.
T Consensus 402 g~I~av~vs~--------------dGK~~vva------------------N---dr~el~vididngnv~~idkS~~~lI 446 (668)
T COG4946 402 GNIEAVKVSP--------------DGKKVVVA------------------N---DRFELWVIDIDNGNVRLIDKSEYGLI 446 (668)
T ss_pred cceEEEEEcC--------------CCcEEEEE------------------c---CceEEEEEEecCCCeeEeccccccee
Confidence 4444454443 57888886 1 23448899999993 44432
Q ss_pred ---eeccceEEee--ccceeeeecceeeeeeeceeEEEEEEEccCCeEEEeeeeC
Q 014429 178 ---VFHNDFINLA--HNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 227 (424)
Q Consensus 178 ---~f~~D~I~Ls--HN~Gv~Ly~dlLAILS~q~QtIhi~qI~~~G~fv~vrtIG 227 (424)
+.+.+.=++| --.| .-.|.||+|.+. .|+..++-|=-
T Consensus 447 tdf~~~~nsr~iAYafP~g------------y~tq~Iklydm~-~~Kiy~vTT~t 488 (668)
T COG4946 447 TDFDWHPNSRWIAYAFPEG------------YYTQSIKLYDMD-GGKIYDVTTPT 488 (668)
T ss_pred EEEEEcCCceeEEEecCcc------------eeeeeEEEEecC-CCeEEEecCCc
Confidence 2222222332 2223 345999999998 47998887643
No 27
>PRK03629 tolB translocation protein TolB; Provisional
Probab=65.61 E-value=71 Score=33.37 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=19.3
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 50 SFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 50 ~lRKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
.--.|||||++|+.-|.+.....||.+.
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 4457899999887666555456677653
No 28
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=64.69 E-value=15 Score=40.79 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=57.2
Q ss_pred eecCCC-ceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCc---ccc-----cCCC-------CCccccchhhhhhe
Q 014429 43 DIECPD-HSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKE---EDC-----CRHD-------LPPKAKRFESFFTQ 106 (424)
Q Consensus 43 ~Ve~P~-~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~---~e~-----~~~~-------~~~r~~~F~~fF~~ 106 (424)
|.|-|. |-=-|-||||+|++|-.-=-..|.||.+--++.-.++ +|. -..+ ..-|.--|-.=.-.
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 455663 4455889999999999999999999999855533321 111 0000 01122234444445
Q ss_pred eeEEEcCCCCeeeeeeeeEEecCceEEEEEeecc
Q 014429 107 LYSVTLASCNELICKDFFLSMEGNQFGLFATSTA 140 (424)
Q Consensus 107 ~~~~~la~~~e~L~refsLft~dgryvivasa~~ 140 (424)
+|.+.++.- +||.++=-..|...++||..-
T Consensus 127 hy~~RIP~~----GRDm~y~~~scDly~~gsg~e 156 (703)
T KOG2321|consen 127 HYRTRIPKF----GRDMKYHKPSCDLYLVGSGSE 156 (703)
T ss_pred eeeeecCcC----CccccccCCCccEEEeecCcc
Confidence 667776654 567777777777777765443
No 29
>PRK04922 tolB translocation protein TolB; Provisional
Probab=64.20 E-value=1e+02 Score=32.03 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=22.1
Q ss_pred EEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEe
Q 014429 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL 174 (424)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~ 174 (424)
-+..||+++++.+.. + ..+.++++|+.+|...
T Consensus 342 ~~SpDG~~Ia~~~~~---~---------------~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 342 SVSPDGKKIAMVHGS---G---------------GQYRIAVMDLSTGSVR 373 (433)
T ss_pred EECCCCCEEEEEECC---C---------------CceeEEEEECCCCCeE
Confidence 456799998886431 0 1357999999998653
No 30
>PRK04922 tolB translocation protein TolB; Provisional
Probab=63.23 E-value=97 Score=32.22 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=40.5
Q ss_pred EEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeeeecceeeeeee
Q 014429 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL 204 (424)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly~dlLAILS~ 204 (424)
-|..||++++++|--. +.| .++++|+.+|.+ .+.++..+.. .+-..+=-++.+|..+.
T Consensus 298 ~~spDG~~l~f~sd~~-------------g~~-----~iy~~dl~~g~~-~~lt~~g~~~---~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 298 TWAPDGKSIYFTSDRG-------------GRP-----QIYRVAASGGSA-ERLTFQGNYN---ARASVSPDGKKIAMVHG 355 (433)
T ss_pred EECCCCCEEEEEECCC-------------CCc-----eEEEEECCCCCe-EEeecCCCCc---cCEEECCCCCEEEEEEC
Confidence 4678999999864210 111 488899988863 2233332211 01122223566777665
Q ss_pred ce--eEEEEEEEccCCeEEEe
Q 014429 205 RY--QTIHILQVRDLGNLVDV 223 (424)
Q Consensus 205 q~--QtIhi~qI~~~G~fv~v 223 (424)
.. ..|+++.+. +|....+
T Consensus 356 ~~~~~~I~v~d~~-~g~~~~L 375 (433)
T PRK04922 356 SGGQYRIAVMDLS-TGSVRTL 375 (433)
T ss_pred CCCceeEEEEECC-CCCeEEC
Confidence 43 256676654 4665533
No 31
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=62.75 E-value=1.1e+02 Score=30.72 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=22.0
Q ss_pred EEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEee
Q 014429 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLD 175 (424)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D 175 (424)
-|..||+.+++++... .+..++++|+.+|...+
T Consensus 240 ~~spDg~~l~~~~~~~------------------~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKD------------------GNPDIYVMDLDGKQLTR 272 (417)
T ss_pred EECCCCCEEEEEECCC------------------CCccEEEEECCCCCEEE
Confidence 4688999888753210 12458999999986543
No 32
>PRK04792 tolB translocation protein TolB; Provisional
Probab=61.55 E-value=1.2e+02 Score=32.10 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=40.7
Q ss_pred EEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccce---EEeeccceeeeecceeee
Q 014429 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDF---INLAHNMGVFLYDDLLAI 201 (424)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~---I~LsHN~Gv~Ly~dlLAI 201 (424)
-|..||+++++.+... + +..++++|+.+|.+. +.++.... ..++- -++.|+.
T Consensus 312 ~wSpDG~~I~f~s~~~---------g---------~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~Sp------DG~~l~~ 366 (448)
T PRK04792 312 SWHPDGKSLIFTSERG---------G---------KPQIYRVNLASGKVS-RLTFEGEQNLGGSITP------DGRSMIM 366 (448)
T ss_pred EECCCCCEEEEEECCC---------C---------CceEEEEECCCCCEE-EEecCCCCCcCeeECC------CCCEEEE
Confidence 3567999988864210 1 136899999999752 23332221 11222 3456777
Q ss_pred eeeceeEEEEEEEc-cCCeEEE
Q 014429 202 VSLRYQTIHILQVR-DLGNLVD 222 (424)
Q Consensus 202 LS~q~QtIhi~qI~-~~G~fv~ 222 (424)
.+......+|+.+. ++|....
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred EEecCCceEEEEEECCCCCeEE
Confidence 66655556666664 3455433
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=58.61 E-value=1.3e+02 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.7
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 51 FRKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 51 lRKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
--.|+|||++|++-+. ...+.+|...
T Consensus 14 ~~~~~~~~~~l~~~~~-~g~i~i~~~~ 39 (289)
T cd00200 14 CVAFSPDGKLLATGSG-DGTIKVWDLE 39 (289)
T ss_pred EEEEcCCCCEEEEeec-CcEEEEEEee
Confidence 3468999999888775 4588999886
No 34
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=55.34 E-value=68 Score=33.67 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=52.2
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCc
Q 014429 51 FRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGN 130 (424)
Q Consensus 51 lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dg 130 (424)
-=+-|||||||-|=-+-+.+|-+|+----+ + .+ .| +--.+-+.+.=|||- |..+|
T Consensus 248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~-----g-------~L---~~---------~~~~~teg~~PR~F~-i~~~g 302 (346)
T COG2706 248 AIHISPDGRFLYASNRGHDSIAVFSVDPDG-----G-------KL---EL---------VGITPTEGQFPRDFN-INPSG 302 (346)
T ss_pred EEEECCCCCEEEEecCCCCeEEEEEEcCCC-----C-------EE---EE---------EEEeccCCcCCccce-eCCCC
Confidence 345699999999999999999999875100 0 00 00 000111223345553 56689
Q ss_pred eEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEee
Q 014429 131 QFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLD 175 (424)
Q Consensus 131 ryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D 175 (424)
+|+|+| +-.=++++.+-+|=++|+|.-
T Consensus 303 ~~Liaa------------------~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 303 RFLIAA------------------NQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CEEEEE------------------ccCCCcEEEEEEcCCCceEEe
Confidence 999996 112245889999999998753
No 35
>PRK04043 tolB translocation protein TolB; Provisional
Probab=53.52 E-value=1.1e+02 Score=32.26 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=19.2
Q ss_pred ceeeeeCCCCCeEEEeeCCC-ceEEEEeec
Q 014429 49 HSFRKFTDDGQYLISFSRNH-QDLIVYRPM 77 (424)
Q Consensus 49 ~~lRKFTpDG~yLIaFS~dq-~sL~vYry~ 77 (424)
...-+|||||+.++++++.. ..=.||.+-
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 44678999999988885443 233555553
No 36
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=52.31 E-value=15 Score=42.78 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=22.5
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 52 RKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
.||||||+|| |+.+|.+-+.|.++.
T Consensus 75 VR~S~dG~~l-AsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 75 VRFSPDGSYL-ASGSDDRLVMIWERA 99 (942)
T ss_pred EEECCCCCeE-eeccCcceEEEeeec
Confidence 5799999997 678888999999999
No 37
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=49.62 E-value=2.8e+02 Score=27.87 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=17.3
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 52 RKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
-.|+|||++|+.-|.......||.+.
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEE
Confidence 37899999988766544444566553
No 38
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=48.70 E-value=50 Score=34.24 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=17.4
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
-+||||+|+++=......+.|..-.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETT
T ss_pred EEcCCCCEEEEEecCCCceeEeccc
Confidence 3789999998877777777777654
No 39
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=47.57 E-value=34 Score=25.52 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=25.7
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeecC
Q 014429 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (424)
Q Consensus 49 ~~lRKFTpDG~yLIaFS~dq~sL~vYry~g 78 (424)
+.+-.++|.+. |||...+..+|.|||..|
T Consensus 14 v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 14 VSCMSWCPTMD-LIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence 56788999987 899999999999999975
No 40
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.58 E-value=1.3e+02 Score=32.43 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCeeEeeecCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCC
Q 014429 36 VPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASC 115 (424)
Q Consensus 36 ~Pn~Tv~~Ve~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~ 115 (424)
.|......++.+|..|. ++|.|++++- .+..+-+||. ....|.+.|..=-
T Consensus 23 l~~k~lg~~~~~p~~ls-~npngr~v~V--~g~geY~iyt----------------~~~~r~k~~G~g~----------- 72 (443)
T PF04053_consen 23 LSVKELGSCEIYPQSLS-HNPNGRFVLV--CGDGEYEIYT----------------ALAWRNKAFGSGL----------- 72 (443)
T ss_dssp ---EEEEE-SS--SEEE-E-TTSSEEEE--EETTEEEEEE----------------TTTTEEEEEEE-S-----------
T ss_pred EEeccCCCCCcCCeeEE-ECCCCCEEEE--EcCCEEEEEE----------------ccCCcccccCcee-----------
Q ss_pred CeeeeeeeeEEecCceEEEEEeeccccC-CCCCCCC--CCcCCCCccee------------EEEEEEccCceEeeeeeec
Q 014429 116 NELICKDFFLSMEGNQFGLFATSTAQIH-DAPTTGR--AIQGVPFIEKI------------TFHLLRLEDGVVLDEKVFH 180 (424)
Q Consensus 116 ~e~L~refsLft~dgryvivasa~~~~~-~~~~~ne--~v~~~P~le~y------------tfhlVdL~~G~v~D~~~f~ 180 (424)
.++|...|+|+++-++.-+.- -...+.. .+++--+.+++ .+.+.|.++|.+.-+....
T Consensus 73 -------~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 73 -------SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp -------EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-
T ss_pred -------EEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecC
Q ss_pred c-ceEEeeccceeeeecceeeeeeeceeEEEEEEEccC--------------CeEEE-eeeeCCccCcch
Q 014429 181 N-DFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDL--------------GNLVD-VRTIGSFCREDD 234 (424)
Q Consensus 181 ~-D~I~LsHN~Gv~Ly~dlLAILS~q~QtIhi~qI~~~--------------G~fv~-vrtIG~fc~eDD 234 (424)
. ..|+++.+ ++++|+++ ..+|+|+.-+-+ -...+ -..|---|+.+|
T Consensus 146 ~vk~V~Ws~~------g~~val~t--~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 146 AVKYVIWSDD------GELVALVT--KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp E-EEEEE-TT------SSEEEEE---S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred CCcEEEEECC------CCEEEEEe--CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
No 41
>PTZ00420 coronin; Provisional
Probab=44.74 E-value=2.9e+02 Score=30.76 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=22.1
Q ss_pred eeeeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 50 SFRKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 50 ~lRKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
.--.|+|+|.+++|-+.....|.||...
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 3447999999988776666789999876
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=43.92 E-value=2.4e+02 Score=29.79 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=75.5
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhh------------------eee-E
Q 014429 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFT------------------QLY-S 109 (424)
Q Consensus 49 ~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~------------------~~~-~ 109 (424)
.+=-.|+|+| .||+...+...+.|+..++.. +. .-...+...+.+-.|..=-. ... +
T Consensus 249 v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~--~~-~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~ 324 (456)
T KOG0266|consen 249 VTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE--CV-RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC 324 (456)
T ss_pred eEEEEecCCC-CEEEEecCCCcEEEEeccCCe--EE-EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee
Confidence 4556799999 899999999999999998511 11 00001122222111111000 000 1
Q ss_pred EEcCCCCeee-eeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeec
Q 014429 110 VTLASCNELI-CKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAH 188 (424)
Q Consensus 110 ~~la~~~e~L-~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsH 188 (424)
+..-.+.+.. .==++.|.++|.|+++++ ++=++-++|+..|.......-+..-+ ..+
T Consensus 325 ~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---------------------~d~~~~~w~l~~~~~~~~~~~~~~~~-~~~ 382 (456)
T KOG0266|consen 325 LKLLSGAENSAPVTSVQFSPNGKYLLSAS---------------------LDRTLKLWDLRSGKSVGTYTGHSNLV-RCI 382 (456)
T ss_pred eecccCCCCCCceeEEEECCCCcEEEEec---------------------CCCeEEEEEccCCcceeeecccCCcc-eeE
Confidence 2222222222 223556667777777652 33356778888776555544433321 222
Q ss_pred cceeeeecceeeeeeeceeEEEEEEEcc
Q 014429 189 NMGVFLYDDLLAIVSLRYQTIHILQVRD 216 (424)
Q Consensus 189 N~Gv~Ly~dlLAILS~q~QtIhi~qI~~ 216 (424)
..=++.-+..+.+.+-...+|+++.+..
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 2222233556667778888888888764
No 43
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=43.79 E-value=1.1e+02 Score=31.06 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=29.8
Q ss_pred eeeeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeee
Q 014429 118 LICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 177 (424)
Q Consensus 118 ~L~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~ 177 (424)
+.--..+-+.+||+++.++-+.. -=|.++++++|+++|..+...
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~~----------------G~e~~~l~v~Dl~tg~~l~d~ 166 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSDG----------------GSEWYTLRVFDLETGKFLPDG 166 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEET----------------TSSEEEEEEEETTTTEEEEEE
T ss_pred eEEeeeeeECCCCCEEEEEecCC----------------CCceEEEEEEECCCCcCcCCc
Confidence 44444455678999998863332 126789999999999776543
No 44
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=43.71 E-value=29 Score=38.38 Aligned_cols=38 Identities=8% Similarity=0.336 Sum_probs=31.2
Q ss_pred EeeecCCCceeeeeCCCCCeEEEeeCC-----CceEEEEeecC
Q 014429 41 VYDIECPDHSFRKFTDDGQYLISFSRN-----HQDLIVYRPMW 78 (424)
Q Consensus 41 v~~Ve~P~~~lRKFTpDG~yLIaFS~d-----q~sL~vYry~g 78 (424)
|..++++++.+..++|||+||+.=+-- ...+-||-|.|
T Consensus 349 i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 349 IAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 457889999999999999999976532 45788999985
No 45
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=43.21 E-value=61 Score=37.61 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=46.6
Q ss_pred EEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeeeecceeeeeee
Q 014429 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL 204 (424)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly~dlLAILS~ 204 (424)
=|-+|||.+|.|++- =|+-++||-+|.+.|...+..-.+.|+-+ ==+|.||...+
T Consensus 583 ~FS~DgrWlisasmD---------------------~tIr~wDlpt~~lID~~~vd~~~~sls~S----PngD~LAT~Hv 637 (910)
T KOG1539|consen 583 TFSPDGRWLISASMD---------------------STIRTWDLPTGTLIDGLLVDSPCTSLSFS----PNGDFLATVHV 637 (910)
T ss_pred EeCCCCcEEEEeecC---------------------CcEEEEeccCcceeeeEecCCcceeeEEC----CCCCEEEEEEe
Confidence 356677777776542 25889999999999999998888777632 23677777777
Q ss_pred ceeEEEEE
Q 014429 205 RYQTIHIL 212 (424)
Q Consensus 205 q~QtIhi~ 212 (424)
-+=-|+++
T Consensus 638 d~~gIylW 645 (910)
T KOG1539|consen 638 DQNGIYLW 645 (910)
T ss_pred cCceEEEE
Confidence 77777765
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.17 E-value=96 Score=35.86 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=70.7
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCceE
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF 132 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dgry 132 (424)
--+|||+.++.-|+|. .+..|.|. ... + .|.-.+. +-+++++..|.=.++.||=.+| +||+|
T Consensus 461 ~~~pD~~g~vT~saDk-tVkfWdf~----l~~-~------~~gt~~k---~lsl~~~rtLel~ddvL~v~~S---pdgk~ 522 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADK-TVKFWDFK----LVV-S------VPGTQKK---VLSLKHTRTLELEDDVLCVSVS---PDGKL 522 (888)
T ss_pred eecCCCCceEEecCCc-EEEEEeEE----EEe-c------cCcccce---eeeeccceEEeccccEEEEEEc---CCCcE
Confidence 3589999999999985 58889987 222 1 1111111 2778899999889999987655 89999
Q ss_pred EEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeeeecceeeeeeeceeEEEEE
Q 014429 133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHIL 212 (424)
Q Consensus 133 vivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly~dlLAILS~q~QtIhi~ 212 (424)
+-|+ |=|-|.++.= .|+.-| =|+|||+-|-|+|++
T Consensus 523 LaVs---------------------LLdnTVkVyf------lDtlKF-----------flsLYGHkLPV~smD------- 557 (888)
T KOG0306|consen 523 LAVS---------------------LLDNTVKVYF------LDTLKF-----------FLSLYGHKLPVLSMD------- 557 (888)
T ss_pred EEEE---------------------eccCeEEEEE------ecceee-----------eeeecccccceeEEe-------
Confidence 9885 1122222221 123333 367999999999985
Q ss_pred EEccCCeEEEe
Q 014429 213 QVRDLGNLVDV 223 (424)
Q Consensus 213 qI~~~G~fv~v 223 (424)
|.++++++--
T Consensus 558 -IS~DSklivT 567 (888)
T KOG0306|consen 558 -ISPDSKLIVT 567 (888)
T ss_pred -ccCCcCeEEe
Confidence 6666666543
No 47
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=42.93 E-value=1e+02 Score=33.77 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=47.8
Q ss_pred EEEEEEc---cCceEeeeeeeccceEEeeccceeeeecceeeeeeece------------------------eEEEEEEE
Q 014429 162 TFHLLRL---EDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRY------------------------QTIHILQV 214 (424)
Q Consensus 162 tfhlVdL---~~G~v~D~~~f~~D~I~LsHN~Gv~Ly~dlLAILS~q~------------------------QtIhi~qI 214 (424)
.++|||. ++-++..+..+... -+++||.+|.|.|++-.+ =.|.+|.|
T Consensus 32 ~l~Iida~p~~~~~~~s~I~~~~~------~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~vYDI 105 (521)
T PF09826_consen 32 RLYIIDAYPAEEMKVVSRIDLDGS------PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSSTKITVYDI 105 (521)
T ss_pred EEEEEECCCchhceEEEEEecCCC------hhheEEcCCEEEEEEeccccccccccccccccccccccCCceeEEEEEEC
Confidence 3677777 55677777777776 469999999999999443 25788876
Q ss_pred cc------------CCeEEEeeeeCCccC
Q 014429 215 RD------------LGNLVDVRTIGSFCR 231 (424)
Q Consensus 215 ~~------------~G~fv~vrtIG~fc~ 231 (424)
.+ +|.++.-|.||-.-+
T Consensus 106 sD~~~P~~~~~~~~~G~yvsSR~ig~~vy 134 (521)
T PF09826_consen 106 SDPSNPKLLREIEIEGSYVSSRKIGDYVY 134 (521)
T ss_pred CCCCCceEEEEEEeeeEEEeEEEECCEEE
Confidence 42 588888899987554
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=38.92 E-value=1.7e+02 Score=31.01 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=69.0
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeee---eeeeeEEecC
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELI---CKDFFLSMEG 129 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L---~refsLft~d 129 (424)
.|||||.+.|.-|+|.+ +.|+.-+ + .||-+...+.-. =....-++.++.+.|++ ||-=.++.-+
T Consensus 355 ~ft~dG~~iisaSsDgt-vkvW~~K--t-----teC~~Tfk~~~~-----d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGT-VKVWHGK--T-----TECLSTFKPLGT-----DYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred EEcCCCCeEEEecCCcc-EEEecCc--c-----hhhhhhccCCCC-----cccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 69999999999999975 6666544 1 444211111110 01223344555555542 2222222211
Q ss_pred ceEEEEEeeccc-cCCCCCCCCCCcCCC-----CcceeEEEEEEccCceEeeeeee-ccceEEeeccceeeeecceeeee
Q 014429 130 NQFGLFATSTAQ-IHDAPTTGRAIQGVP-----FIEKITFHLLRLEDGVVLDEKVF-HNDFINLAHNMGVFLYDDLLAIV 202 (424)
Q Consensus 130 gryvivasa~~~-~~~~~~~ne~v~~~P-----~le~ytfhlVdL~~G~v~D~~~f-~~D~I~LsHN~Gv~Ly~dlLAIL 202 (424)
=+=-||-|.+.- ++-..-.+..+.|-- --||-.+|+....+|.+--+... ..|.|-|+|+ =|.++||--
T Consensus 422 ~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH----PHqNllAsY 497 (508)
T KOG0275|consen 422 MQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH----PHQNLLASY 497 (508)
T ss_pred ccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC----cccchhhhh
Confidence 111122222221 111111222222211 23889999999999988666544 5799999996 356666643
No 49
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=38.34 E-value=57 Score=31.00 Aligned_cols=67 Identities=10% Similarity=0.199 Sum_probs=45.5
Q ss_pred HHhhchHHHhhhhhhhhh-----------hccCCeeeEeecccccccc-cCCC-C----CceEEEEEeeccceEEEEE-c
Q 014429 307 KFFFHFQDYVDLIIWKVQ-----------FLDRHHLLIKFGSVDGGVS-RNVD-H----HPAFFAVYNMETTEVVAFY-Q 368 (424)
Q Consensus 307 ~Fy~~F~~~~~L~MWKmQ-----------lLD~~hLLIky~s~D~~~~-r~~~-~----~~sffvvYnm~t~eVl~vy-e 368 (424)
+.++.|..|+.|..=.+. +++.++++.|+-+.=-+.- |..+ + ..=+||++|..+|+|-|.| +
T Consensus 82 ~hW~kf~~f~~~~~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~~~~i~GaSf~GFYYI~~~~~~G~I~G~Yyh 161 (176)
T PF09783_consen 82 EHWSKFPPFRPLSKDENLQKLSDDFDYEDLLNQRYIFMRWKERFLVPDHRVKSISGASFEGFYYICLDRSTGSIEGYYYH 161 (176)
T ss_pred HHHhcCCcchhhhhhhccccccCCccchhhcCCCcEEEEEEeEEEcccccCCCcCceeEeeEEEEEEEccCCeEEEEEEC
Confidence 567777777777665555 7788889998887632211 1111 2 3457999999999999999 4
Q ss_pred CChHH
Q 014429 369 NSAEE 373 (424)
Q Consensus 369 n~S~e 373 (424)
..|+-
T Consensus 162 ~~se~ 166 (176)
T PF09783_consen 162 PNSEK 166 (176)
T ss_pred CCCCc
Confidence 44443
No 50
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=36.97 E-value=1.6e+02 Score=30.75 Aligned_cols=47 Identities=4% Similarity=0.003 Sum_probs=36.4
Q ss_pred EEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccc
Q 014429 125 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND 182 (424)
Q Consensus 125 Lft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D 182 (424)
++..||+.+-+|++.+.+.....-.+. +-++|++++.+..+.....|
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~-----------V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDY-----------VEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCE-----------EEEEECccCcEEeEEccCCC
Confidence 377899999998877766533333333 66999999999999999877
No 51
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=36.23 E-value=14 Score=24.23 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.4
Q ss_pred eeeeeCCCCCe
Q 014429 50 SFRKFTDDGQY 60 (424)
Q Consensus 50 ~lRKFTpDG~y 60 (424)
.+.-||||||-
T Consensus 4 ~~t~FSp~Grl 14 (23)
T PF10584_consen 4 SITTFSPDGRL 14 (23)
T ss_dssp STTSBBTTSSB
T ss_pred CceeECCCCeE
Confidence 45569999985
No 52
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=35.10 E-value=55 Score=24.46 Aligned_cols=27 Identities=11% Similarity=0.237 Sum_probs=23.4
Q ss_pred eeeeCCCCC--eEEEeeCCCceEEEEeec
Q 014429 51 FRKFTDDGQ--YLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 51 lRKFTpDG~--yLIaFS~dq~sL~vYry~ 77 (424)
-.||||++- -|++||-++--+.|+.-+
T Consensus 5 ~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 5 CCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred EEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 369998766 899999999999998877
No 53
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=35.01 E-value=2.2e+02 Score=30.17 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=74.7
Q ss_pred ecCCCceee--eeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCCCeeeee
Q 014429 44 IECPDHSFR--KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICK 121 (424)
Q Consensus 44 Ve~P~~~lR--KFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~~e~L~r 121 (424)
-.+|..|++ |.||||..+++-|.|+. |.+|.-- . +......+ =-..|+.+-++.+..++-...
T Consensus 45 tt~p~nf~kgckWSPDGSciL~~sedn~-l~~~nlP--~------dlys~~~~-----~~~~~~~~~~~r~~eg~tvyd- 109 (406)
T KOG2919|consen 45 TTKPLNFLKGCKWSPDGSCILSLSEDNC-LNCWNLP--F------DLYSKKAD-----GPLNFSKHLSYRYQEGETVYD- 109 (406)
T ss_pred cCCchhhhccceeCCCCceEEeecccCe-eeEEecC--h------hhcccCCC-----CccccccceeEEeccCCEEEE-
Confidence 456877774 99999999999998874 6666543 1 11101111 113466777777766653332
Q ss_pred eeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeee--ccceEEeecc-----ceeee
Q 014429 122 DFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVF--HNDFINLAHN-----MGVFL 194 (424)
Q Consensus 122 efsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f--~~D~I~LsHN-----~Gv~L 194 (424)
++-+ -.+ ++..++.+--+... .+=-||+||--||.+--+++- +.|-+--||. -|=+|
T Consensus 110 -y~wY------s~M-~s~qP~t~l~a~ss--------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql 173 (406)
T KOG2919|consen 110 -YCWY------SRM-KSDQPSTNLFAVSS--------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL 173 (406)
T ss_pred -EEee------ecc-ccCCCccceeeecc--------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE
Confidence 2222 222 11111111001110 111289999999987544332 2233333332 13333
Q ss_pred ecceeeeeeeceeEEEEEEEccCCeEEEeee
Q 014429 195 YDDLLAIVSLRYQTIHILQVRDLGNLVDVRT 225 (424)
Q Consensus 195 y~dlLAILS~q~QtIhi~qI~~~G~fv~vrt 225 (424)
|-- -.-|||||.+..-|++-+|.+
T Consensus 174 faG-------ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 174 FAG-------YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred eec-------ccceEEEeeccCCCCCCcchh
Confidence 311 136899999954577766663
No 54
>PRK02889 tolB translocation protein TolB; Provisional
Probab=34.08 E-value=95 Score=32.35 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=15.3
Q ss_pred eeCCCCCeEEEeeCCCceEEEEee
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRP 76 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry 76 (424)
.|||||++++..+.+...-.||.+
T Consensus 334 ~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 334 RISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred EECCCCCEEEEEEccCCcEEEEEE
Confidence 589999998766655443344443
No 55
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.69 E-value=1.1e+02 Score=32.15 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=43.2
Q ss_pred eecCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeE---EEcCCCCee
Q 014429 43 DIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYS---VTLASCNEL 118 (424)
Q Consensus 43 ~Ve~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~---~~la~~~e~ 118 (424)
+++.-+.|=--||||+.+| |.|+|...|.|+.-++...+-. +....+....+-.+||...|. ..|.++...
T Consensus 223 G~d~A~iy~iaFSp~~s~L-avsSdKgTlHiF~l~~~~~~~~----~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~ 296 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWL-AVSSDKGTLHIFSLRDTENTED----ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQC 296 (346)
T ss_pred CCchheEEEEEeCCCccEE-EEEcCCCeEEEEEeecCCCCcc----ccccccccccccchhcccceeEEEEEccCCCcE
Confidence 3444444555699999875 6788999999999996443222 112333333466667766543 556665433
No 56
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.38 E-value=1e+02 Score=32.34 Aligned_cols=49 Identities=33% Similarity=0.451 Sum_probs=35.8
Q ss_pred EEEEEEccCceEeeeeeeccc-----eEEeeccceeeeecceeeeeeeceeEEEEEEEccC
Q 014429 162 TFHLLRLEDGVVLDEKVFHND-----FINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDL 217 (424)
Q Consensus 162 tfhlVdL~~G~v~D~~~f~~D-----~I~LsHN~Gv~Ly~dlLAILS~q~QtIhi~qI~~~ 217 (424)
-+-|.|-++|.+.-+..==.| .|..||| ...|||.| -++|+|||.+.+.
T Consensus 205 LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsS-dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 205 LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSS-DKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEEcCCCcEeeeeecCCchheEEEEEeCCC------ccEEEEEc-CCCeEEEEEeecC
Confidence 477889999988777554444 3566776 45677766 5699999999863
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=30.83 E-value=52 Score=36.43 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=19.9
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCCC
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWLS 80 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~~ 80 (424)
||||||..|+.-++|.+ ||=|-|-+
T Consensus 197 RysPDG~~Fat~gsDgk---i~iyDGkt 221 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGK---IYIYDGKT 221 (603)
T ss_pred EECCCCCeEEEecCCcc---EEEEcCCC
Confidence 89999999999999986 45555533
No 58
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=30.64 E-value=42 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=17.2
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEE
Q 014429 51 FRKFTDDGQYLISFSRNHQDLIVY 74 (424)
Q Consensus 51 lRKFTpDG~yLIaFS~dq~sL~vY 74 (424)
=-.|+|+|++|++=|.|. .|.||
T Consensus 16 ~i~~~~~~~~~~s~~~D~-~i~vw 38 (39)
T PF00400_consen 16 SIAWSPDGNFLASGSSDG-TIRVW 38 (39)
T ss_dssp EEEEETTSSEEEEEETTS-EEEEE
T ss_pred EEEEecccccceeeCCCC-EEEEE
Confidence 346999999999988654 55555
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.33 E-value=28 Score=39.62 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.2
Q ss_pred ceeeeeCCCCCeEEEeeCCCceEEEEeecC
Q 014429 49 HSFRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (424)
Q Consensus 49 ~~lRKFTpDG~yLIaFS~dq~sL~vYry~g 78 (424)
..--|||||||||..=+.|. -|.|++-+.
T Consensus 270 Iw~mKFS~DGKyLAsaGeD~-virVWkVie 298 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAGEDG-VIRVWKVIE 298 (712)
T ss_pred EEEEEeCCCCceeeecCCCc-eEEEEEEec
Confidence 46789999999999888775 688888875
No 60
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=29.74 E-value=2e+02 Score=30.17 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=57.9
Q ss_pred eeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeec-cceEEeeccceee-eecce
Q 014429 121 KDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH-NDFINLAHNMGVF-LYDDL 198 (424)
Q Consensus 121 refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~-~D~I~LsHN~Gv~-Ly~dl 198 (424)
+=-.-++.||||++|.-+||.. +..+|||+.+++..+...+ |=-|+-+-|+|.+ |.+|=
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~-------------------SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPAT-------------------SVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSE-------------------EEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTS
T ss_pred ccceEEccCCcEEEEEccCCCC-------------------eEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCC
Confidence 3344567899999999887753 3889999999998877765 4456666667765 33331
Q ss_pred eeeeeeceeEEEEEEEccCCeEEEeeeeCCccCcchHHHHhhc
Q 014429 199 LAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISN 241 (424)
Q Consensus 199 LAILS~q~QtIhi~qI~~~G~fv~vrtIG~fc~eDD~l~l~~~ 241 (424)
.+++ +.+.++|+....++ --|=.+||.+|....
T Consensus 158 -sl~~--------v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 158 -SLLT--------VTLDADGKEAQKST-KVFDPDDDPLFEHPA 190 (342)
T ss_dssp -CEEE--------EEETSTSSEEEEEE-EESSTTTS-B-S--E
T ss_pred -ceEE--------EEECCCCCEeEeec-cccCCCCcccccccc
Confidence 2222 23566899873333 456667777777755
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=29.71 E-value=6.7e+02 Score=26.20 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=78.1
Q ss_pred CCCeeEeeecCCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhheeeEEEcCCC
Q 014429 36 VPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASC 115 (424)
Q Consensus 36 ~Pn~Tv~~Ve~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~~~~~~la~~ 115 (424)
+|++... ...+.--+--|.|.|-+|.+-+... .|.+|.-+ +...| | | ..+.+..+..
T Consensus 131 ~~~cqg~-l~~~~~pi~AfDp~GLifA~~~~~~-~IkLyD~R----s~dkg-------P-----F-----~tf~i~~~~~ 187 (311)
T KOG1446|consen 131 VKKCQGL-LNLSGRPIAAFDPEGLIFALANGSE-LIKLYDLR----SFDKG-------P-----F-----TTFSITDNDE 187 (311)
T ss_pred CCCCceE-EecCCCcceeECCCCcEEEEecCCC-eEEEEEec----ccCCC-------C-----c-----eeEccCCCCc
Confidence 3444433 3444444567899998887776555 88888887 33211 1 2 2233333444
Q ss_pred CeeeeeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEeeccceeeee
Q 014429 116 NELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY 195 (424)
Q Consensus 116 ~e~L~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~Ly 195 (424)
.|+=.=|| .+||+|+++.+.... +|+||-=+|.+.-++..+--.=.++ -+...-
T Consensus 188 ~ew~~l~F---S~dGK~iLlsT~~s~---------------------~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~ft 241 (311)
T KOG1446|consen 188 AEWTDLEF---SPDGKSILLSTNASF---------------------IYLLDAFDGTVKSTFSGYPNAGNLP--LSATFT 241 (311)
T ss_pred cceeeeEE---cCCCCEEEEEeCCCc---------------------EEEEEccCCcEeeeEeeccCCCCcc--eeEEEC
Confidence 56655555 489999999754442 7888888888776666543222111 011111
Q ss_pred cceeeeeeece-eEEEEEEEccCC-eEEEee
Q 014429 196 DDLLAIVSLRY-QTIHILQVRDLG-NLVDVR 224 (424)
Q Consensus 196 ~dlLAILS~q~-QtIhi~qI~~~G-~fv~vr 224 (424)
-|===|||=-. =+|||+++. +| ++...+
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~-tg~~v~~~~ 271 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLE-TGKKVAVLR 271 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcC-CCcEeeEec
Confidence 22222333333 689999986 45 343333
No 62
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.58 E-value=2.1e+02 Score=32.84 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=53.1
Q ss_pred CceeeeeCCCCCeEEEeeCCC----------ceEEEEeecCCCCCc------Cccccc---CCCCCccccchhhhhheee
Q 014429 48 DHSFRKFTDDGQYLISFSRNH----------QDLIVYRPMWLSFSC------KEEDCC---RHDLPPKAKRFESFFTQLY 108 (424)
Q Consensus 48 ~~~lRKFTpDG~yLIaFS~dq----------~sL~vYry~g~~~~~------~~~e~~---~~~~~~r~~~F~~fF~~~~ 108 (424)
|.|=.+|+||-||||.=|-|. .-+++|+ |....+ +.|... ++|.++|-=..+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~------ 524 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH------ 524 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEec--CCCcceeeEEecCCceEEEecCCCceeeeeeccc------
Confidence 566779999999999999864 4566666 533211 112221 2333332111111
Q ss_pred EEEcCCC-CeeeeeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceE
Q 014429 109 SVTLASC-NELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVV 173 (424)
Q Consensus 109 ~~~la~~-~e~L~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v 173 (424)
.-++--. |+.=.=||..|-.++-||-=||+ |=|.-+||..+|..
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs---------------------D~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS---------------------DRTVRLWDVSTGNS 569 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCC---------------------CceEEEEEcCCCcE
Confidence 1111111 12233467888877777655422 34678899999976
No 63
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=29.25 E-value=68 Score=33.79 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=20.9
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 52 RKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
--||.||+||..-+.| +++.|+.-+
T Consensus 92 ~~FsSdGK~lat~~~D-r~Ir~w~~~ 116 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGD-RSIRLWDVR 116 (420)
T ss_pred eEEcCCCceeEEEeCC-ceEEEEecc
Confidence 4699999999998855 788988876
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=27.32 E-value=2.5e+02 Score=25.52 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=15.2
Q ss_pred eeEEEEEEccCceEeeeeeecc
Q 014429 160 KITFHLLRLEDGVVLDEKVFHN 181 (424)
Q Consensus 160 ~ytfhlVdL~~G~v~D~~~f~~ 181 (424)
+-.++.+|+++|.+.-++....
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESST
T ss_pred cCcEEEEecCCCcEEEEeecCC
Confidence 4567788888887766666633
No 65
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.45 E-value=54 Score=34.97 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeec
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
-|||||+.|+..+.| +.+|..=.
T Consensus 193 ~FS~dgk~lasig~d--~~~VW~~~ 215 (398)
T KOG0771|consen 193 DFSPDGKFLASIGAD--SARVWSVN 215 (398)
T ss_pred eeCCCCcEEEEecCC--ceEEEEec
Confidence 499999999999999 88888765
No 66
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=26.00 E-value=68 Score=34.12 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=19.6
Q ss_pred EecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEe
Q 014429 126 SMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVL 174 (424)
Q Consensus 126 ft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~ 174 (424)
|++||+.+|++|...- +.-+|+|||++|++.
T Consensus 43 ft~dG~kllF~s~~dg------------------~~nly~lDL~t~~i~ 73 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDG------------------NRNLYLLDLATGEIT 73 (386)
T ss_dssp B-TTS-EEEEEE-TTS------------------S-EEEEEETTT-EEE
T ss_pred cCCCCCEEEEEeccCC------------------CcceEEEEcccCEEE
Confidence 5999999999766321 234899999999654
No 67
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.50 E-value=2.4e+02 Score=32.88 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=56.2
Q ss_pred CCCCCcccc----ccccccccCCCeeEeeec-CCCceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCC
Q 014429 19 PAPGTSVHC----ARRFYENIVPSFTVYDIE-CPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDL 93 (424)
Q Consensus 19 ~~pgt~~~~----~R~FYqni~Pn~Tv~~Ve-~P~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~ 93 (424)
.+-|+..-. .|..|=|+.-...+.-.. |-++.-=||||||+++++=. +.-|+||+.-|. .+ +
T Consensus 64 Sp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~--gn~lqiw~~P~~---~~-~------- 130 (893)
T KOG0291|consen 64 SPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGC--GNLLQIWHAPGE---IK-N------- 130 (893)
T ss_pred CCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEe--cceeEEEecCcc---hh-c-------
Confidence 455666544 244554443333333333 44677779999999887766 678999988631 11 1
Q ss_pred CccccchhhhhheeeEEEcCCCCeeeeeeeeEEecCceEEEEEe
Q 014429 94 PPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFAT 137 (424)
Q Consensus 94 ~~r~~~F~~fF~~~~~~~la~~~e~L~refsLft~dgryvivas 137 (424)
.|.- | .++.+.+-+.++..+=|+| +|.|+++++|
T Consensus 131 -----~~~p-F-vl~r~~~g~fddi~si~Ws---~DSr~l~~gs 164 (893)
T KOG0291|consen 131 -----EFNP-F-VLHRTYLGHFDDITSIDWS---DDSRLLVTGS 164 (893)
T ss_pred -----ccCc-c-eEeeeecCCccceeEEEec---cCCceEEecc
Confidence 1111 3 2455666666666665554 6888888754
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.41 E-value=77 Score=36.23 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.0
Q ss_pred eeCCCCCeEEEeeCCCceEEEEeecCC
Q 014429 53 KFTDDGQYLISFSRNHQDLIVYRPMWL 79 (424)
Q Consensus 53 KFTpDG~yLIaFS~dq~sL~vYry~g~ 79 (424)
-||+||+|+||=| +...+.|+++..+
T Consensus 553 sfs~Dgk~IVs~s-eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 553 SFSSDGKHIVSAS-EDSWVYIWKNDSF 578 (712)
T ss_pred eEccCCCEEEEee-cCceEEEEeCCCC
Confidence 5999999999999 8889999998743
No 69
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=22.88 E-value=72 Score=34.39 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.5
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 52 RKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
-||.|+|.||++-|+|| ++.||.-+
T Consensus 270 ~~f~~n~N~Llt~skD~-~~kv~DiR 294 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQ-SCKVFDIR 294 (464)
T ss_pred EEEcCCCCeeEEccCCc-eEEEEehh
Confidence 48999999999999998 88888776
No 70
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=21.72 E-value=1e+02 Score=32.95 Aligned_cols=139 Identities=16% Similarity=0.046 Sum_probs=81.1
Q ss_pred ccccccccCCCeeEeeecCC-CceeeeeCCCCCeEEEeeCCCceEEEEeecCCCCCcCcccccCCCCCccccchhhhhhe
Q 014429 28 ARRFYENIVPSFTVYDIECP-DHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQ 106 (424)
Q Consensus 28 ~R~FYqni~Pn~Tv~~Ve~P-~~~lRKFTpDG~yLIaFS~dq~sL~vYry~g~~~~~~~~e~~~~~~~~r~~~F~~fF~~ 106 (424)
.|-||..+-...+-.-+..+ .-..-+|||||++|+=-+...-...||-+---+...+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~---------------------- 275 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP---------------------- 275 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----------------------
Confidence 35677777777777767777 4678899999977654333335555555531111110
Q ss_pred eeEEEcCCCCeeeeeeeeEEecCceEEEEEeeccccCCCCCCCCCCcCCCCcceeEEEEEEccCceEeeeeeeccceEEe
Q 014429 107 LYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINL 186 (424)
Q Consensus 107 ~~~~~la~~~e~L~refsLft~dgryvivasa~~~~~~~~~~ne~v~~~P~le~ytfhlVdL~~G~v~D~~~f~~D~I~L 186 (424)
.| .+++-++.+= -+.+||+++.++|... +.| -++++|++.+.+ .+.++.-..=.
T Consensus 276 ----~L-t~~~gi~~~P-s~spdG~~ivf~Sdr~-------------G~p-----~I~~~~~~g~~~-~riT~~~~~~~- 329 (425)
T COG0823 276 ----RL-TNGFGINTSP-SWSPDGSKIVFTSDRG-------------GRP-----QIYLYDLEGSQV-TRLTFSGGGNS- 329 (425)
T ss_pred ----ec-ccCCccccCc-cCCCCCCEEEEEeCCC-------------CCc-----ceEEECCCCCce-eEeeccCCCCc-
Confidence 00 1111112211 2467999999975433 233 488999999876 45555433222
Q ss_pred eccceeeeecceeeeeeec--eeEEEEEEEcc
Q 014429 187 AHNMGVFLYDDLLAIVSLR--YQTIHILQVRD 216 (424)
Q Consensus 187 sHN~Gv~Ly~dlLAILS~q--~QtIhi~qI~~ 216 (424)
+-+++=.++.+++-+.. .+-|-++.+..
T Consensus 330 --~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 330 --NPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred --CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 55888889999998832 24455555543
No 71
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.69 E-value=85 Score=33.38 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=28.5
Q ss_pred eeecCCCceee-----------eeCCCCCeEEEeeCCCceEEEEeec
Q 014429 42 YDIECPDHSFR-----------KFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 42 ~~Ve~P~~~lR-----------KFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
-||..|.|-|. -|+|-|+||+.-. |..+|.||.|+
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktlrvwdl~ 364 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTLRVWDLK 364 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcEEEEEec
Confidence 35666677664 5999999999876 77899999999
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=21.10 E-value=66 Score=33.01 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.9
Q ss_pred CceeeeeCCCCCeEEEeeCC
Q 014429 48 DHSFRKFTDDGQYLISFSRN 67 (424)
Q Consensus 48 ~~~lRKFTpDG~yLIaFS~d 67 (424)
+|+-=+|+||||||..=|+|
T Consensus 191 nCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 191 NCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred ceEEEEECCCCceEeecccc
Confidence 79999999999999877766
No 73
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=20.95 E-value=51 Score=33.37 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.4
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEEeecC
Q 014429 51 FRKFTDDGQYLISFSRNHQDLIVYRPMW 78 (424)
Q Consensus 51 lRKFTpDG~yLIaFS~dq~sL~vYry~g 78 (424)
-=-+||||++|+...-|.+.+..|.+..
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~ 132 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLPD 132 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEEE
T ss_pred ceEECCCCCEEEEEEECCcCCceEEeec
Confidence 3459999999999999999999988873
No 74
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=20.86 E-value=75 Score=33.67 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=16.8
Q ss_pred eeeeCCCCCeEEEeeCCCceEEEE
Q 014429 51 FRKFTDDGQYLISFSRNHQDLIVY 74 (424)
Q Consensus 51 lRKFTpDG~yLIaFS~dq~sL~vY 74 (424)
+.+|||||+|+..-|+- -|+|-
T Consensus 13 ~c~fSp~g~yiAs~~~y--rlviR 34 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY--RLVIR 34 (447)
T ss_pred ceeECCCCCeeeeeeee--EEEEe
Confidence 67999999999988743 45443
No 75
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=20.73 E-value=85 Score=33.05 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.3
Q ss_pred eeeCCCCCeEEEeeCCCceEEEEeec
Q 014429 52 RKFTDDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 52 RKFTpDG~yLIaFS~dq~sL~vYry~ 77 (424)
..||.||.|+.|=|+-+|+|.|++=.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecC
Confidence 46999999999999999999998854
No 76
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.22 E-value=1.5e+02 Score=19.85 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred CCCCeEEEeeCCCceEEEEeec
Q 014429 56 DDGQYLISFSRNHQDLIVYRPM 77 (424)
Q Consensus 56 pDG~yLIaFS~dq~sL~vYry~ 77 (424)
|||++|.+-.....+|.++...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECC
Confidence 8999999999999999998764
Done!