BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014430
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
Length = 482
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 204/449 (45%), Positives = 272/449 (60%), Gaps = 41/449 (9%)
Query: 8 AVVGFMILMYFFETYLDLRQHXXXXXXXXXX-TLEGVISQEKFEKSRGYSLDKSHFHFVH 66
AV+ F +Y +ET+L RQ L ++ E FEKSR Y LDKS F F
Sbjct: 22 AVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 81
Query: 67 EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
+ + ILLF +P+ W+ SG F G E EI +L FL L+S L LP+
Sbjct: 82 GLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLPW 141
Query: 127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
SLY+TFVIE +HGFN+QT+ F +D IK ++ + P+ S ++ I++ GG Y IY W
Sbjct: 142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201
Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
F V+SLV++T+Y IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K++VV+GS RS
Sbjct: 202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRS 261
Query: 247 SHSNAYMYGFFKNKRIVLYDTLI------------------------------------- 269
SHSNAY YGFFKNKRIVL+DTL+
Sbjct: 262 SHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKK 321
Query: 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGF-D 328
Q CKN EE++AV+ HELGHWKL HT+ + I Q+ + L F + ++ +LF +FGF D
Sbjct: 322 QGCKN-EEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYD 380
Query: 329 TQPVLIG-LIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQE 387
+QP LIG LIIFQ P ++SF L ++SR FEFQADAFAKKLG A L + L+KL +
Sbjct: 381 SQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALIKLNK 440
Query: 388 ENLSAMNTDPWYSAYHYSHPPLVERLAAI 416
+NL +D +S +HYSHPPL+ERL A+
Sbjct: 441 DNLGFPVSDWLFSMWHYSHPPLLERLQAL 469
>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
Length = 482
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 271/449 (60%), Gaps = 41/449 (9%)
Query: 8 AVVGFMILMYFFETYLDLRQHXXXXXXXXXX-TLEGVISQEKFEKSRGYSLDKSHFHFVH 66
AV+ F +Y +ET+L RQ L ++ E FEKSR Y LDKS F F
Sbjct: 22 AVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 81
Query: 67 EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
+ + ILLF +P+ W+ SG F G E EI +L FL L+S L LP+
Sbjct: 82 GLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLPW 141
Query: 127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
SLY+TFVIE +HGFN+QT+ F +D IK ++ + P+ S ++ I++ GG Y IY W
Sbjct: 142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201
Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
F V+SLV++T+Y IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K++VV+GS RS
Sbjct: 202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRS 261
Query: 247 SHSNAYMYGFFKNKRIVLYDTLI------------------------------------- 269
SHSNAY YGFFKNKRIVL+DTL+
Sbjct: 262 SHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKK 321
Query: 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGF-D 328
Q CKN EE++AV+ H LGHWKL HT+ + I Q+ + L F + ++ +LF +FGF D
Sbjct: 322 QGCKN-EEVLAVLGHALGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYD 380
Query: 329 TQPVLIG-LIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQE 387
+QP LIG LIIFQ P ++SF L ++SR FEFQADAFAKKLG A L + L+KL +
Sbjct: 381 SQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALIKLNK 440
Query: 388 ENLSAMNTDPWYSAYHYSHPPLVERLAAI 416
+NL +D +S +HYSHPPL+ERL A+
Sbjct: 441 DNLGFPVSDWLFSMWHYSHPPLLERLQAL 469
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
Length = 461
Score = 317 bits (812), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 177/440 (40%), Positives = 249/440 (56%), Gaps = 20/440 (4%)
Query: 4 PYMEAVVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEGVISQEKFEKSRGYSLDKSHFH 63
P+ + F I + FE+YL RQ+ LE I E F KSR YS K+ F
Sbjct: 14 PWKLIISAFSIAQFSFESYLTYRQYQKLSETKLPPVLEDEIDDETFHKSRNYSRAKAKFS 73
Query: 64 FVHEFVTILMDSAILLFRILPWFWKKS---GNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
+ + + + P W + N ++ V + + +L FL + S
Sbjct: 74 IFSDIYNLAQKLVFIKYDFFPKIWHMAVTLSNAVLPVRFHMVSTVAQSLCFLGLLSSMST 133
Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
L DLP S YS FV+E + GFNK T+ L+ DMIK + LA +G PI+ + I K
Sbjct: 134 LVDLPLSYYSHFVLEEKFGFNKLTVKLWITDMIKSLTLAYAIGGPILYLFLKIFDKFPTD 193
Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
Y+ F+FV+ ++ MT+ PV I PLFNKFTPL +GEL++ IE LA + FPL K+FV+
Sbjct: 194 FLWYIMVFLFVVQILAMTIIPVFIMPLFNKFTPLEDGELKKSIESLADRVGFPLDKIFVI 253
Query: 241 DGSTRSSHSNAYMYGF-FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFI 299
DGS RSSHSNAY G F +KRIVL+DTL+ DE I AV+AHE+GHW+ NH + I
Sbjct: 254 DGSKRSSHSNAYFTGLPFTSKRIVLFDTLVNSNSTDE-ITAVLAHEIGHWQKNHIVNMVI 312
Query: 300 AVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQ---------------PVLIGLIIFQHTVI 344
Q+ T L F +T + ++ + +FGF + P++IG ++F +
Sbjct: 313 FSQLHTFLIFSLFTSIYRNSSFYNTFGFFVEKSSSGFVDPVITKEFPIIIGFMLFNDLLT 372
Query: 345 PIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHY 404
P++ + F ++L+SR+ E+QADA+AKKLGY L L+ LQ +NLS MN DP YS+YHY
Sbjct: 373 PLECAMQFIMSLISRTHEYQADAYAKKLGYKQNLCRALIDLQIKNLSTMNVDPLYSSYHY 432
Query: 405 SHPPLVERLAAIDEPDKKEK 424
SHP L ERL A+D +K+K
Sbjct: 433 SHPTLAERLTALDYVSEKKK 452
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 230 LKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVI 282
+ F ++ DG +++ + A +GF + +VL + L + +N E++AV+
Sbjct: 214 VDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVV 266
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 23/165 (13%)
Query: 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTD 320
R VL + LI D E+ + H + T + + + T F GY+ V N +
Sbjct: 315 RAVLAENLIASML-DLEVASANDQTFSHSDIRRTARTLMQMLPGTDFIFSGYSAVPNYDN 373
Query: 321 LFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRA 380
+F FD + + ++ +V GL V+ +A+ A + A A++A
Sbjct: 374 MFAGSNFDAED------FDDYNILQRDLMVDGGLRPVT-----EAETIAIRQKAARAIQA 422
Query: 381 -----GLVKLQEENLSAMNTDPWYSAYHYSHPP--LVERLAAIDE 418
GL + +E + A Y+ PP +VE L+A++E
Sbjct: 423 VFRELGLPPIADEEVEAAT----YAHGSNEMPPRNVVEDLSAVEE 463
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 263 VLYDTLIQQCKNDEEIVAVIAHELGH 288
+L+D L N E +V VIAHEL H
Sbjct: 303 LLFDPLSSSSSNKERVVTVIAHELAH 328
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 33/112 (29%)
Query: 65 VHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDL 124
+HE V L+++ IL+F ++ F + NF ++ T++ +
Sbjct: 337 IHEVVKTLVEAIILVFLVMYLFLQ---NF--------RATLIPTIA-------------V 372
Query: 125 PFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQK 176
P L TF + A GF+ T+ +F GM+LAI L +V A I++V+
Sbjct: 373 PVVLLGTFAVLAAFGFSINTLTMF------GMVLAIGL---LVDAAIVVVEN 415
>pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dttp
pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Datp
pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases,
Native Nrdd
pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dctp.
pdb|1HK8|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dgtp
Length = 605
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 95 VLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYST 131
+LVG D EIL ++ A + W++ T FSLYST
Sbjct: 409 ILVGRDIGREILTKMN--AHLKQWTERTGFAFSLYST 443
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGH 288
+ +L+D N E +V VIAHEL H
Sbjct: 341 ENALLFDPQSSSISNKERVVTVIAHELAH 369
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGH 288
+ +L+D N E +V VIAHEL H
Sbjct: 297 ENALLFDPQSSSISNKERVVTVIAHELAH 325
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGH 288
+ +L+D N E +V VIAHEL H
Sbjct: 298 ENALLFDPQSSSISNKERVVTVIAHELAH 326
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
pdb|2YVS|B Chain B, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
Length = 219
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 394 NTDPWYSAYHYSHPPLVER 412
PW AYH+ HP VER
Sbjct: 144 EEGPWLYAYHFGHPKEVER 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,885,495
Number of Sequences: 62578
Number of extensions: 465231
Number of successful extensions: 1195
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 22
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)