Query 014430
Match_columns 424
No_of_seqs 238 out of 1892
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2719 Metalloprotease [Gener 100.0 7.4E-87 1.6E-91 652.0 46.5 415 3-423 6-427 (428)
2 PRK03001 M48 family peptidase; 100.0 5.1E-43 1.1E-47 339.1 29.7 254 151-422 2-280 (283)
3 PRK03982 heat shock protein Ht 100.0 3E-42 6.6E-47 334.5 29.1 259 150-422 2-283 (288)
4 PRK01265 heat shock protein Ht 100.0 2.9E-40 6.3E-45 321.3 30.9 228 187-421 49-323 (324)
5 PRK02391 heat shock protein Ht 100.0 9.8E-38 2.1E-42 302.4 30.0 227 185-421 42-291 (296)
6 PRK03072 heat shock protein Ht 100.0 1.2E-37 2.6E-42 301.3 30.2 254 151-421 6-284 (288)
7 PRK04897 heat shock protein Ht 100.0 1.1E-36 2.3E-41 296.4 30.3 221 188-418 49-297 (298)
8 PRK02870 heat shock protein Ht 100.0 2.1E-35 4.5E-40 289.0 32.0 219 188-420 79-335 (336)
9 PRK05457 heat shock protein Ht 100.0 2.9E-35 6.2E-40 283.8 31.3 215 191-419 46-283 (284)
10 PRK01345 heat shock protein Ht 100.0 2.1E-35 4.5E-40 288.8 30.4 223 185-421 33-280 (317)
11 PF01435 Peptidase_M48: Peptid 100.0 1.4E-32 3E-37 257.7 5.9 208 192-415 6-226 (226)
12 COG0501 HtpX Zn-dependent prot 100.0 1.8E-27 3.9E-32 232.9 27.8 190 218-422 100-299 (302)
13 COG4783 Putative Zn-dependent 99.7 8.6E-17 1.9E-21 159.9 17.3 189 205-422 58-262 (484)
14 PF05569 Peptidase_M56: BlaR1 99.7 4.4E-16 9.5E-21 152.4 20.6 165 207-416 131-299 (299)
15 KOG2661 Peptidase family M48 [ 99.6 4.9E-14 1.1E-18 133.3 14.9 154 236-423 240-399 (424)
16 COG4219 MecR1 Antirepressor re 99.5 7E-12 1.5E-16 119.3 19.7 156 216-418 135-293 (337)
17 COG4784 Putative Zn-dependent 99.3 1.1E-10 2.3E-15 111.3 15.4 173 215-417 62-248 (479)
18 PF04228 Zn_peptidase: Putativ 97.8 0.00042 9.1E-09 67.2 13.7 148 221-418 101-279 (292)
19 PF06114 DUF955: Domain of unk 97.3 0.0018 4E-08 53.5 9.8 35 259-298 28-62 (122)
20 PF10463 Peptidase_U49: Peptid 97.3 0.00061 1.3E-08 62.5 6.5 22 276-297 99-120 (206)
21 PRK09672 phage exclusion prote 97.0 0.0017 3.7E-08 62.2 7.0 80 275-416 162-253 (305)
22 COG1451 Predicted metal-depend 96.8 0.0036 7.8E-08 58.5 6.8 72 217-298 123-195 (223)
23 PF01863 DUF45: Protein of unk 96.7 0.0036 7.8E-08 57.6 6.3 71 217-297 112-183 (205)
24 PRK04351 hypothetical protein; 96.6 0.0073 1.6E-07 52.8 7.1 70 215-289 2-72 (149)
25 PF04298 Zn_peptidase_2: Putat 96.0 0.94 2E-05 42.1 17.9 85 201-294 18-105 (222)
26 PF13699 DUF4157: Domain of un 95.5 0.035 7.5E-07 43.1 5.5 69 213-291 1-74 (79)
27 COG2321 Predicted metalloprote 95.1 0.16 3.4E-06 48.2 9.5 148 223-418 100-276 (295)
28 smart00731 SprT SprT homologue 94.3 0.086 1.9E-06 46.0 5.3 33 258-291 40-72 (146)
29 PF10026 DUF2268: Predicted Zn 94.1 0.15 3.1E-06 46.8 6.7 75 218-294 4-81 (195)
30 PF10263 SprT-like: SprT-like 93.8 0.25 5.4E-06 43.3 7.4 32 260-292 43-74 (157)
31 PF04450 BSP: Peptidase of pla 91.6 0.41 8.8E-06 44.2 5.8 47 247-294 61-112 (205)
32 COG3091 SprT Zn-dependent meta 91.2 0.41 8.8E-06 41.5 4.9 67 216-289 4-72 (156)
33 PF13203 DUF2201_N: Putative m 90.9 0.26 5.6E-06 48.0 4.0 40 259-299 42-81 (292)
34 PF12388 Peptidase_M57: Dual-a 89.9 0.65 1.4E-05 42.9 5.4 33 259-294 117-150 (211)
35 PF08325 WLM: WLM domain; Int 89.6 0.9 1.9E-05 41.3 6.1 71 219-296 25-100 (186)
36 PRK04860 hypothetical protein; 89.3 1 2.2E-05 39.9 6.0 32 258-290 44-75 (160)
37 PF12725 DUF3810: Protein of u 88.2 2.1 4.6E-05 42.3 8.2 18 274-291 192-209 (318)
38 COG2856 Predicted Zn peptidase 86.9 1 2.2E-05 41.8 4.7 30 260-294 59-88 (213)
39 PRK06926 flagellar motor prote 86.9 31 0.00067 33.3 18.7 49 268-317 120-169 (271)
40 COG4900 Predicted metallopepti 86.4 2.2 4.9E-05 34.9 5.8 72 217-291 7-93 (133)
41 PF02031 Peptidase_M7: Strepto 85.1 1.3 2.8E-05 37.4 4.0 37 249-290 53-89 (132)
42 cd04268 ZnMc_MMP_like Zinc-dep 83.0 1.4 3.1E-05 38.6 3.7 32 258-290 71-106 (165)
43 COG2738 Predicted Zn-dependent 78.9 33 0.00071 31.3 10.7 81 205-294 25-108 (226)
44 PF05572 Peptidase_M43: Pregna 78.3 0.96 2.1E-05 39.8 1.0 62 236-298 19-90 (154)
45 PF13485 Peptidase_MA_2: Pepti 75.9 3.9 8.5E-05 33.5 4.1 34 257-294 8-41 (128)
46 PF00413 Peptidase_M10: Matrix 74.4 1.6 3.5E-05 37.7 1.3 31 259-290 85-117 (154)
47 PF14247 DUF4344: Domain of un 73.9 9.4 0.0002 35.6 6.3 41 247-289 47-103 (220)
48 cd04279 ZnMc_MMP_like_1 Zinc-d 73.7 2.1 4.5E-05 37.4 1.9 16 275-290 101-116 (156)
49 cd06455 M3A_TOP Peptidase M3 T 73.5 5.2 0.00011 41.8 5.1 49 243-293 213-278 (472)
50 TIGR02289 M3_not_pepF oligoend 72.6 2.1 4.5E-05 45.7 1.8 75 217-295 272-354 (549)
51 COG1164 Oligoendopeptidase F [ 72.0 2.1 4.5E-05 46.1 1.7 45 246-294 352-396 (598)
52 COG3864 Uncharacterized protei 70.5 4.6 0.0001 39.3 3.5 37 259-296 51-87 (396)
53 PF01432 Peptidase_M3: Peptida 70.0 5.6 0.00012 41.3 4.4 55 235-291 186-255 (458)
54 PF14891 Peptidase_M91: Effect 69.6 15 0.00032 32.9 6.4 17 275-291 100-116 (174)
55 PRK09109 motC flagellar motor 69.1 1.1E+02 0.0023 29.1 15.5 48 270-318 117-165 (246)
56 cd06459 M3B_Oligoendopeptidase 69.0 3.6 7.9E-05 42.0 2.7 47 244-294 192-238 (427)
57 COG3590 PepO Predicted metallo 68.9 1.5 3.2E-05 45.9 -0.2 42 247-290 449-499 (654)
58 cd04270 ZnMc_TACE_like Zinc-de 68.5 3.2 6.9E-05 39.4 2.0 17 275-291 164-180 (244)
59 TIGR00181 pepF oligoendopeptid 66.8 4.6 0.0001 43.4 3.1 47 243-295 348-395 (591)
60 cd06258 Peptidase_M3_like The 66.7 9.3 0.0002 38.3 5.1 47 246-294 112-170 (365)
61 PF13688 Reprolysin_5: Metallo 65.7 3 6.6E-05 37.7 1.2 17 274-290 138-154 (196)
62 cd04272 ZnMc_salivary_gland_MP 64.6 5.4 0.00012 37.1 2.7 39 248-290 119-157 (220)
63 KOG2290 Rhomboid family protei 64.5 23 0.0005 36.4 7.1 44 65-126 543-586 (652)
64 PF01431 Peptidase_M13: Peptid 64.2 5.7 0.00012 36.3 2.7 43 250-294 1-52 (206)
65 PF13582 Reprolysin_3: Metallo 64.0 3.5 7.7E-05 34.2 1.2 12 279-290 108-119 (124)
66 PF09768 Peptidase_M76: Peptid 63.9 17 0.00037 32.6 5.6 35 254-291 49-84 (173)
67 PRK08456 flagellar motor prote 62.9 1.4E+02 0.0031 28.4 15.7 89 214-317 72-164 (257)
68 cd00203 ZnMc Zinc-dependent me 62.3 5.3 0.00011 34.9 2.1 27 260-290 82-108 (167)
69 COG3824 Predicted Zn-dependent 61.6 6.5 0.00014 32.8 2.3 31 259-290 84-121 (136)
70 PF13574 Reprolysin_2: Metallo 61.1 4.2 9.1E-05 36.4 1.2 13 279-291 112-124 (173)
71 cd04277 ZnMc_serralysin_like Z 60.7 18 0.00038 32.5 5.3 32 260-291 94-126 (186)
72 COG2274 SunT ABC-type bacterio 60.6 1.5E+02 0.0031 32.9 13.1 61 113-175 229-289 (709)
73 TIGR03793 TOMM_pelo TOMM prope 60.4 24 0.00052 27.2 5.1 55 215-283 15-76 (77)
74 cd04278 ZnMc_MMP Zinc-dependen 60.4 4.6 9.9E-05 35.3 1.3 33 258-290 84-119 (157)
75 KOG1047 Bifunctional leukotrie 59.7 16 0.00035 38.4 5.2 60 225-294 241-304 (613)
76 PRK12482 flagellar motor prote 59.7 1.8E+02 0.0038 28.4 15.3 44 272-316 138-182 (287)
77 cd04269 ZnMc_adamalysin_II_lik 58.9 6.2 0.00013 35.7 2.0 41 247-290 102-143 (194)
78 TIGR02290 M3_fam_3 oligoendope 58.6 5.8 0.00013 42.7 1.9 44 245-294 346-391 (587)
79 COG4324 Predicted aminopeptida 57.5 9.4 0.0002 36.4 2.9 35 266-300 183-222 (376)
80 PRK08990 flagellar motor prote 57.3 1.8E+02 0.0039 27.8 16.6 91 213-317 70-161 (254)
81 PF01447 Peptidase_M4: Thermol 56.9 8.9 0.00019 33.6 2.5 40 247-290 108-147 (150)
82 TIGR02414 pepN_proteo aminopep 56.3 21 0.00045 40.3 5.8 20 275-294 280-299 (863)
83 cd04267 ZnMc_ADAM_like Zinc-de 56.1 5.2 0.00011 36.1 1.0 16 275-290 130-145 (192)
84 PRK13267 archaemetzincin-like 53.7 43 0.00092 30.2 6.4 16 278-293 125-141 (179)
85 PRK14015 pepN aminopeptidase N 52.2 25 0.00054 39.8 5.7 19 276-294 294-312 (875)
86 PF01421 Reprolysin: Reprolysi 52.1 9.9 0.00022 34.5 2.1 37 249-289 104-142 (199)
87 PF01433 Peptidase_M1: Peptida 52.1 9.7 0.00021 38.3 2.2 70 219-294 234-311 (390)
88 cd06460 M32_Taq Peptidase fami 51.6 23 0.0005 36.1 4.8 69 213-293 103-174 (396)
89 PF13583 Reprolysin_4: Metallo 50.6 7.5 0.00016 35.8 1.1 15 276-291 136-150 (206)
90 cd04271 ZnMc_ADAM_fungal Zinc- 50.5 5.7 0.00012 37.3 0.3 11 280-290 147-157 (228)
91 COG1054 Predicted sulfurtransf 49.4 33 0.00072 33.4 5.2 43 207-255 9-52 (308)
92 PRK13109 flhB flagellar biosyn 46.7 1.4E+02 0.003 30.1 9.4 27 216-242 239-272 (358)
93 PF06262 DUF1025: Possibl zinc 46.3 25 0.00054 28.4 3.3 35 259-293 49-88 (97)
94 TIGR00328 flhB flagellar biosy 46.1 1.5E+02 0.0033 29.7 9.6 27 216-242 230-263 (347)
95 PRK08124 flagellar motor prote 45.3 2.8E+02 0.0062 26.5 16.4 48 270-318 118-166 (263)
96 PF15061 DUF4538: Domain of un 44.8 17 0.00037 26.3 1.9 24 37-60 24-47 (58)
97 KOG3314 Ku70-binding protein [ 44.7 51 0.0011 29.2 5.1 39 255-296 71-109 (194)
98 TIGR02412 pepN_strep_liv amino 44.3 35 0.00076 38.4 5.3 19 276-294 285-303 (831)
99 PF15061 DUF4538: Domain of un 43.6 41 0.00089 24.3 3.6 25 185-209 8-32 (58)
100 PF08014 DUF1704: Domain of un 43.4 41 0.00089 33.7 5.1 70 213-294 108-182 (349)
101 smart00235 ZnMc Zinc-dependent 43.3 11 0.00024 32.0 0.9 12 279-290 87-98 (140)
102 PRK12721 secretion system appa 43.1 1.7E+02 0.0037 29.3 9.4 27 216-242 230-263 (349)
103 PRK05702 flhB flagellar biosyn 41.9 1.8E+02 0.004 29.3 9.4 27 216-242 237-270 (359)
104 COG0308 PepN Aminopeptidase N 41.7 48 0.001 37.5 5.8 76 217-295 245-324 (859)
105 PF02163 Peptidase_M50: Peptid 40.9 17 0.00037 32.7 1.8 14 278-291 7-20 (192)
106 PRK08156 type III secretion sy 40.4 4E+02 0.0088 26.9 18.7 27 216-242 225-258 (361)
107 PF15048 OSTbeta: Organic solu 40.2 60 0.0013 27.3 4.7 33 2-34 32-64 (125)
108 PRK05320 rhodanese superfamily 39.2 41 0.00089 32.2 4.2 56 207-270 7-63 (257)
109 cd04276 ZnMc_MMP_like_2 Zinc-d 39.1 19 0.00042 32.9 1.9 32 260-291 92-129 (197)
110 TIGR01404 FlhB_rel_III type II 38.9 2.5E+02 0.0053 28.1 9.8 26 216-241 229-261 (342)
111 COG1291 MotA Flagellar motor c 38.4 2.5E+02 0.0055 27.0 9.2 91 201-303 60-150 (266)
112 PF11391 DUF2798: Protein of u 38.3 99 0.0022 22.3 5.2 36 137-176 19-54 (60)
113 PF02687 FtsX: FtsX-like perme 37.5 2E+02 0.0044 22.6 10.2 46 130-175 28-74 (121)
114 PF06861 BALF1: BALF1 protein; 37.5 25 0.00055 31.2 2.2 25 271-295 125-149 (182)
115 cd04327 ZnMc_MMP_like_3 Zinc-d 37.4 21 0.00045 32.5 1.8 16 276-291 90-105 (198)
116 PF11694 DUF3290: Protein of u 37.3 2.8E+02 0.0061 24.2 10.0 26 216-241 78-103 (149)
117 cd06163 S2P-M50_PDZ_RseP-like 37.2 19 0.0004 32.6 1.4 13 279-291 10-22 (182)
118 KOG3624 M13 family peptidase [ 36.9 24 0.00053 38.7 2.5 41 247-290 480-530 (687)
119 cd05709 S2P-M50 Site-2 proteas 36.8 21 0.00046 31.8 1.8 13 278-290 8-20 (180)
120 PRK00523 hypothetical protein; 36.7 51 0.0011 25.0 3.4 16 220-235 42-57 (72)
121 PRK12468 flhB flagellar biosyn 36.6 2.6E+02 0.0056 28.5 9.6 27 216-242 237-270 (386)
122 PF10023 DUF2265: Predicted am 36.2 22 0.00048 35.3 1.8 60 225-300 126-190 (337)
123 TIGR02421 QEGLA conserved hypo 35.8 54 0.0012 33.1 4.6 63 214-287 134-197 (366)
124 cd06161 S2P-M50_SpoIVFB SpoIVF 35.5 23 0.00049 32.7 1.8 14 277-290 37-50 (208)
125 COG3402 Uncharacterized conser 35.3 1.7E+02 0.0038 25.7 6.9 44 159-202 26-70 (161)
126 cd04273 ZnMc_ADAMTS_like Zinc- 35.1 7.6 0.00016 35.7 -1.5 36 248-290 115-152 (207)
127 PRK01415 hypothetical protein; 34.4 52 0.0011 31.3 4.0 43 207-255 9-52 (247)
128 PF14715 FixP_N: N-terminal do 33.9 54 0.0012 23.1 3.0 24 179-202 21-44 (51)
129 PF12315 DUF3633: Protein of u 33.6 22 0.00048 32.7 1.3 18 274-291 89-106 (212)
130 PF11990 DUF3487: Protein of u 33.4 2.9E+02 0.0063 23.2 11.3 80 144-235 22-102 (121)
131 KOG3607 Meltrins, fertilins an 33.3 33 0.00072 37.8 2.8 44 244-290 291-335 (716)
132 cd06164 S2P-M50_SpoIVFB_CBS Sp 32.4 27 0.00059 32.7 1.8 14 277-290 52-65 (227)
133 PF09471 Peptidase_M64: IgA Pe 31.9 27 0.00059 33.6 1.7 16 274-289 212-227 (264)
134 PF14521 Aspzincin_M35: Lysine 31.4 91 0.002 27.0 4.8 30 260-289 77-107 (148)
135 PRK12772 bifunctional flagella 31.3 3.2E+02 0.0069 29.7 9.8 27 216-242 493-526 (609)
136 PF04138 GtrA: GtrA-like prote 30.9 2.8E+02 0.0061 22.2 7.5 41 131-172 43-83 (117)
137 COG4227 Antirestriction protei 29.8 31 0.00067 32.9 1.6 36 258-295 185-220 (316)
138 TIGR03296 M6dom_TIGR03296 M6 f 29.4 13 0.00029 36.1 -0.9 11 279-289 166-176 (286)
139 PF06930 DUF1282: Protein of u 29.0 4E+02 0.0086 23.4 13.2 32 124-156 76-107 (170)
140 cd06160 S2P-M50_like_2 Unchara 28.9 35 0.00075 30.9 1.8 15 276-290 39-53 (183)
141 COG3763 Uncharacterized protei 28.7 89 0.0019 23.5 3.5 15 221-235 42-56 (71)
142 cd06159 S2P-M50_PDZ_Arch Uncha 28.6 33 0.00072 32.9 1.7 14 277-290 117-130 (263)
143 smart00793 AgrB Accessory gene 28.5 2.6E+02 0.0057 25.1 7.5 23 204-226 118-140 (184)
144 PF02074 Peptidase_M32: Carbox 28.4 1.4E+02 0.003 31.5 6.3 66 217-291 207-272 (494)
145 PF13398 Peptidase_M50B: Pepti 28.2 35 0.00076 31.2 1.7 16 275-290 19-34 (200)
146 TIGR00782 ccoP cytochrome c ox 28.2 99 0.0021 29.9 4.9 25 179-203 27-51 (285)
147 cd06456 M3A_DCP_Oligopeptidase 27.8 85 0.0018 32.3 4.6 50 243-294 160-224 (422)
148 cd04275 ZnMc_pappalysin_like Z 27.2 10 0.00022 35.5 -2.0 20 277-296 136-156 (225)
149 cd06162 S2P-M50_PDZ_SREBP Ster 27.0 37 0.00081 32.8 1.7 16 277-292 134-149 (277)
150 TIGR03750 conj_TIGR03750 conju 26.6 3.7E+02 0.008 22.2 11.8 79 144-234 19-97 (111)
151 KOG2765 Predicted membrane pro 26.5 2E+02 0.0044 29.1 6.6 45 110-154 281-335 (416)
152 PRK00523 hypothetical protein; 26.3 2.1E+02 0.0046 21.7 5.2 30 8-37 10-39 (72)
153 PF02128 Peptidase_M36: Fungal 25.8 22 0.00047 35.9 -0.2 51 245-296 146-203 (378)
154 PRK09108 type III secretion sy 25.5 7E+02 0.015 25.1 18.0 27 216-242 232-265 (353)
155 TIGR02411 leuko_A4_hydro leuko 25.3 45 0.00098 36.1 2.2 29 262-293 266-294 (601)
156 TIGR02212 lolCE lipoprotein re 24.5 6.5E+02 0.014 25.1 10.4 39 134-172 301-340 (411)
157 TIGR02908 CoxD_Bacillus cytoch 24.3 4.1E+02 0.0089 22.0 7.1 47 154-200 26-74 (110)
158 PHA00527 hypothetical protein 24.2 1.4E+02 0.0031 24.2 4.2 71 200-289 9-84 (129)
159 COG4823 AbiF Abortive infectio 23.4 48 0.001 31.6 1.6 14 275-288 89-102 (299)
160 PF05182 Fip1: Fip1 motif; In 22.7 49 0.0011 22.7 1.1 18 137-154 25-42 (45)
161 COG3763 Uncharacterized protei 22.6 3E+02 0.0066 20.8 5.3 27 11-37 12-38 (71)
162 COG3125 CyoD Heme/copper-type 21.9 4.1E+02 0.0089 22.0 6.5 48 149-200 17-66 (111)
163 PRK01844 hypothetical protein; 21.8 2.8E+02 0.0061 21.1 5.1 29 9-37 10-38 (72)
164 PF11085 YqhR: Conserved membr 21.6 5.9E+02 0.013 22.8 7.9 68 155-228 73-140 (173)
165 PF02102 Peptidase_M35: Deuter 21.4 2.6E+02 0.0056 28.2 6.4 74 217-291 228-310 (359)
166 cd06158 S2P-M50_like_1 Unchara 20.8 59 0.0013 29.2 1.7 13 278-290 9-21 (181)
167 PRK01100 putative accessory ge 20.8 4.9E+02 0.011 23.9 7.8 22 204-225 130-151 (210)
168 PF09622 DUF2391: Putative int 20.6 6.6E+02 0.014 24.2 8.7 28 63-90 139-168 (267)
169 PRK10582 cytochrome o ubiquino 20.6 4.9E+02 0.011 21.4 7.1 48 149-200 15-64 (109)
170 PF13829 DUF4191: Domain of un 20.6 7.1E+02 0.015 23.3 12.2 59 216-287 87-145 (224)
171 PRK01844 hypothetical protein; 20.5 1.4E+02 0.003 22.7 3.3 15 221-235 42-56 (72)
No 1
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=100.00 E-value=7.4e-87 Score=651.97 Aligned_cols=415 Identities=51% Similarity=0.858 Sum_probs=399.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CChhhcccCCHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHh
Q 014430 3 FPYMEAVVGFMILMYFFETYLDLRQHAALKLPK-LPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTI-LMDSAILLF 80 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~rq~~~~~~~~-~p~~~~~~~~~e~~~k~~~Y~~~~~~~~~~~~~~~~-~~~~~~l~~ 80 (424)
.+|+.+++++++..+.||+||+.||++.+++++ +|+++.+.+|+|+++||++|+++|.++++++...+. ...+..+++
T Consensus 6 ~~~~~~i~~f~i~~~~~~~yl~~Rq~~~~~~~~~~p~el~~~~~~et~~kar~y~~~k~~f~i~~~~~~~~~~~l~~L~~ 85 (428)
T KOG2719|consen 6 MCRKSIILFFSIFLYLFETYLTERQLKVLKRTKLVPKELGGIIDQETFKKARSYERDKSIFSIFNLLLSLVLLLLLELYL 85 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHhhcCCCHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999998774 899999999999999999999999999999999999 899999999
Q ss_pred chHHHHHHHhhhHHHHhccCcchhHHHHHHHHHHHHHHHhhccccHHhhccchhhcccCCCCCCHHHHHHHHHHHHHHHH
Q 014430 81 RILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAI 160 (424)
Q Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~lP~~~y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~ 160 (424)
|.+|++|..+++...+. ++++++++|...++.++++..+|+++|++|++|++|||||+|.+.|+.|.+|+.++++
T Consensus 86 g~~~~lw~lt~~~~~~~-----~~~~~s~vF~~~~s~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~ 160 (428)
T KOG2719|consen 86 GALPFLWKLTGKFLGKA-----GEIWLSLVFLLLLSIYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGV 160 (428)
T ss_pred hHHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHH
Confidence 99999999998776553 3899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhhHhhhhhcccCccCCchhHHHHHHHHHHHcCCCCCcEEEE
Q 014430 161 VLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240 (424)
Q Consensus 161 vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~ 240 (424)
+++.|+.+++.+++..+|+++.+|+|++.+++++++..++|..|+|+|+|++|+|+++++++||++|++.|+|.++++++
T Consensus 161 ~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi 240 (428)
T KOG2719|consen 161 VLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLLLTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVI 240 (428)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcccEEEEecCCCceEeEchhHHh-h--cCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHhc
Q 014430 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ-Q--CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRN 317 (424)
Q Consensus 241 d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~-~--l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~ 317 (424)
|+|+|++|+|||++|+++.||||++||++. + + ++||+.||+|||+|||+++|+.|++.+..+..++.+++++.++.
T Consensus 241 ~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~-~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~~~~~ 319 (428)
T KOG2719|consen 241 DGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHL-NNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFGFLYR 319 (428)
T ss_pred ecCCCCCCCCeeeeeccccceEEEehhhhhhhhcc-ccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999993 2 4 78999999999999999999999999999999999999999999
Q ss_pred CchhhhhcCCCC-CchHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhCCCCCC
Q 014430 318 STDLFRSFGFDT-QPVLIGLI-IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNT 395 (424)
Q Consensus 318 ~~~l~~~~g~~~-~~~~i~l~-l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~lg~~~~l~~aL~kL~~~n~~~~~~ 395 (424)
++++|.++|+.+ .|..+|++ +|...++|+..+.+++++..||+.||+||+||.++|+++++.+||.|++.||++.|.+
T Consensus 320 ~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyqAD~fA~klGYg~~L~~AL~KL~~dnlsf~~~ 399 (428)
T KOG2719|consen 320 NPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQADAFAKKLGYGKDLRQALIKLFVDNLSFPVS 399 (428)
T ss_pred CcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhcCCCCC
Confidence 999999999987 89999998 8889999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhcCCCChHHHHHHccccCccC
Q 014430 396 DPWYSAYHYSHPPLVERLAAIDEPDKKE 423 (424)
Q Consensus 396 ~~ly~~~~~sHP~l~eRi~~L~~~~~~~ 423 (424)
|++|+.|++|||++.|||++++....|+
T Consensus 400 D~LYs~~~~~HPtvleRl~~l~~~~~k~ 427 (428)
T KOG2719|consen 400 DPLYSAWHHLHPTVLERLDALDYLSEKK 427 (428)
T ss_pred cHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 9999999999999999999999877665
No 2
>PRK03001 M48 family peptidase; Provisional
Probab=100.00 E-value=5.1e-43 Score=339.06 Aligned_cols=254 Identities=18% Similarity=0.251 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhhHhhhhhcccCccCCc---hhHHHHHHHHH
Q 014430 151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPE---GELREKIEKLA 227 (424)
Q Consensus 151 d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~---~~L~~~i~~l~ 227 (424)
|.+|+.++..+++++++.+.+++.. ..+|+++|++.++++++..+++|.++.|++|+ +|+++ |+|++.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la 77 (283)
T PRK03001 2 NWVKTAMLMAAITALFIVIGGMIGG---SQGMLIALLFALGMNFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELA 77 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHH
Confidence 6789999999999998888888774 45588999999999999999999999999998 77765 69999999999
Q ss_pred HHcCCCCCcEEEEeCCCCCCcccEEEEecCCC-ceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHH
Q 014430 228 SSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTL 306 (424)
Q Consensus 228 ~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~-~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~ 306 (424)
++.|+|.|++|++|+ +++|||++|.+++ ++|+++|++++.+ ++||++||+|||+||++++|+.++.....+..+
T Consensus 78 ~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~ 152 (283)
T PRK03001 78 QRAGLPMPKVYLINE----DQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISATMAGA 152 (283)
T ss_pred HHcCCCCCeEEEecC----CCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999999999997 5799999998754 5799999999999 999999999999999999999998766433211
Q ss_pred H-HHHHHHHHhcCchhhhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 014430 307 L-QFGGYTLVRNSTDLFRSFGFDTQP-VLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLG-YASALRAGLV 383 (424)
Q Consensus 307 ~-~~~l~~~~~~~~~l~~~~g~~~~~-~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~lg-~~~~l~~aL~ 383 (424)
+ .+..+. .++..++.++.+ ..++..++. ++.++ ...++.+.+||++||+||++|++++ +|+++++||.
T Consensus 153 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~SR~~E~~AD~~a~~l~~~p~~l~~AL~ 223 (283)
T PRK03001 153 ISALANFA------MFFGGRDENGRPVNPIAGIAVA-ILAPL--AASLIQMAISRAREFEADRGGARISGDPQALASALD 223 (283)
T ss_pred HHHHHHHH------HHhcCCCccccccchHHHHHHH-HHHHH--HHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHHH
Confidence 1 111111 122222322221 112222222 22222 2356778999999999999999984 6999999999
Q ss_pred HHHHhhCCCC------CCC------------hhhhhhhcCCCChHHHHHHccccCcc
Q 014430 384 KLQEENLSAM------NTD------------PWYSAYHYSHPPLVERLAAIDEPDKK 422 (424)
Q Consensus 384 kL~~~n~~~~------~~~------------~ly~~~~~sHP~l~eRi~~L~~~~~~ 422 (424)
|++++|.+.+ .++ ..|..+++|||++.|||+++++.+.+
T Consensus 224 Kl~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~l~~THP~~~eRI~~l~~~~~~ 280 (283)
T PRK03001 224 KIHRYASGIPFQAAEAHPATAQMMIINPLSGGGLANLFSTHPSTEERIARLMAMART 280 (283)
T ss_pred HHHhhhccCCcccccCCHHHHHHHhcCCCCcchHHHHHcCCcCHHHHHHHHHHHHHh
Confidence 9999887532 222 13788999999999999999876543
No 3
>PRK03982 heat shock protein HtpX; Provisional
Probab=100.00 E-value=3e-42 Score=334.46 Aligned_cols=259 Identities=22% Similarity=0.234 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhhHhhhhhcccCccC---CchhHHHHHHHH
Q 014430 150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKL 226 (424)
Q Consensus 150 ~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl---~~~~L~~~i~~l 226 (424)
.|.+|+.++.++++++++.+.+.. .|..||+++|++.+++.++ .+.+|..+.|++++++|+ +++++++.++++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~l 77 (288)
T PRK03982 2 MNQLKTGLLMALLTGLLYAIGYLL---GGSIGPIIAILLALIPNLI-SYYYSDKIVLASYNARIVSEEEAPELYRIVERL 77 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHH-HHHHhHHHHHHhcCCEECChhhhHHHHHHHHHH
Confidence 578899988888887776666532 3678888888888777666 778888999999999998 467899999999
Q ss_pred HHHcCCCCCcEEEEeCCCCCCcccEEEEecCC-CceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHH
Q 014430 227 ASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLT 305 (424)
Q Consensus 227 ~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~-~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~ 305 (424)
|++.|+|.|++|++|+ +++|||++|.++ ++.|+++|+|++.+ |+||++||+|||+||++++|+.++.....+..
T Consensus 78 a~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~ 152 (288)
T PRK03982 78 AERANIPKPKVAIVPT----QTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAATLAG 152 (288)
T ss_pred HHHcCCCCCeEEEEeC----CCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999986 479999999865 45677999999999 99999999999999999999999987765432
Q ss_pred HHHHHHHHHHhcCchhhhhcCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-ChHHHHHHH
Q 014430 306 LLQFGGYTLVRNSTDLFRSFGFDT--QPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLG-YASALRAGL 382 (424)
Q Consensus 306 ~~~~~l~~~~~~~~~l~~~~g~~~--~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~lg-~~~~l~~aL 382 (424)
.+ .++... .....++..+|.+. .+..++..++.. +.++ ...++.+.+||++||+||++|++++ +|+++++||
T Consensus 153 ~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~l~~~~~SR~~E~~AD~~A~~~~~~p~~l~~aL 227 (288)
T PRK03982 153 AI-MYLAQW-LSWGLWFGGGGRDDRNGGNPIGSLLLII-LAPI--AATLIQFAISRQREFSADEGGARLTGNPLALANAL 227 (288)
T ss_pred HH-HHHHHH-HHHHHHhcccCccccccchHHHHHHHHH-HHHH--HHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence 22 122111 11122334444322 233344433322 2222 2456778999999999999999995 789999999
Q ss_pred HHHHHhhCCCC----------------CCChhhhhhhcCCCChHHHHHHccccCcc
Q 014430 383 VKLQEENLSAM----------------NTDPWYSAYHYSHPPLVERLAAIDEPDKK 422 (424)
Q Consensus 383 ~kL~~~n~~~~----------------~~~~ly~~~~~sHP~l~eRi~~L~~~~~~ 422 (424)
.|+++++.+.+ .+++++..+++|||++.|||+++++.+++
T Consensus 228 ~kL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~sTHP~~~eRI~~l~~~~~~ 283 (288)
T PRK03982 228 QKLEKGVRYIPLKNGNPATAHMFIINPFRGQFLANLFSTHPPTEERIERLLEMAQE 283 (288)
T ss_pred HHHHhhhccCCCCCCCHHHHhHhhcCCCCCchhhHHhCCCcCHHHHHHHHHHHHHh
Confidence 99998754322 24457888999999999999999976543
No 4
>PRK01265 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.9e-40 Score=321.25 Aligned_cols=228 Identities=24% Similarity=0.333 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHhhhhHhhhhhcc--cCccCC--chhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecC-CCce
Q 014430 187 AFMFVLSLVMMTLYPVLIAPLFN--KFTPLP--EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKR 261 (424)
Q Consensus 187 ~~~~~~~~~~~~~~p~~i~plf~--~~~pl~--~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~-~~~~ 261 (424)
++.+++.++.++++|.++.|+|| +++|.+ +++|++.++++|++.|+|.|++|++|++ .+|||++|.+ ++++
T Consensus 49 ~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~----~~NAfa~G~~~~~~~ 124 (324)
T PRK01265 49 IFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVP----FPNAFAYGSPIAGKR 124 (324)
T ss_pred HHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCC----CCCeEEeccCCCCCE
Confidence 34455677888899999999996 889987 7899999999999999999999999974 5999999985 5799
Q ss_pred EeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHH
Q 014430 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQH 341 (424)
Q Consensus 262 Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~ 341 (424)
|+++|++++.+ ++||++||+|||+||+||+|+.+++..+.+..++.+..... ....++..+|.+......++.++..
T Consensus 125 Ivvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l~~l 201 (324)
T PRK01265 125 IAITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSL--FWGGMFGGGGGGRGNNGGLLFLIGI 201 (324)
T ss_pred EEEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH--HHHHHhcccccCCCccchHHHHHHH
Confidence 99999999999 99999999999999999999999987776655443332221 1223344344322211122334445
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhhCC--------C-----------CC-CC---
Q 014430 342 TVIPIQHLVSFGLNLVSRSFEFQADAFAKKL--GYASALRAGLVKLQEENLS--------A-----------MN-TD--- 396 (424)
Q Consensus 342 i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~l--g~~~~l~~aL~kL~~~n~~--------~-----------~~-~~--- 396 (424)
+..++.++.+++.+++||.+||+||++|++. |+|+++++||.|+...... . .. +.
T Consensus 202 l~~~~~~i~~~l~~aiSR~rEy~AD~~aa~~~tg~p~~LasAL~KL~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 281 (324)
T PRK01265 202 ALMAVSFVFNLLVLSINRMREAYADVNSALTVPGGAENLQTALAKITLSMDPGALERFKKKSTTNQMASMLFFSNAIEEV 281 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHhcccccccccccccccCChhhhhheeeCccccc
Confidence 5566777788999999999999999999995 8999999999999963321 0 00 11
Q ss_pred -----------------hhhhhhhcCCCChHHHHHHccccCc
Q 014430 397 -----------------PWYSAYHYSHPPLVERLAAIDEPDK 421 (424)
Q Consensus 397 -----------------~ly~~~~~sHP~l~eRi~~L~~~~~ 421 (424)
.....+++||||++|||++|++.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~lFsTHPp~e~Ri~rL~~~~~ 323 (324)
T PRK01265 282 PTWDARELVEYWKTTKVPWYADIFSDHPHPAKRIQLLEKLSK 323 (324)
T ss_pred ccchhhhhhhhhcccchhHHHHHhCCCcChHHHHHHHHHhhh
Confidence 1355789999999999999998754
No 5
>PRK02391 heat shock protein HtpX; Provisional
Probab=100.00 E-value=9.8e-38 Score=302.43 Aligned_cols=227 Identities=22% Similarity=0.193 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhc--ccCccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCC-Cce
Q 014430 185 LWAFMFVLSLVMMTLYPVLIAPLF--NKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKR 261 (424)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~i~plf--~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~-~~~ 261 (424)
+.++.+++.++..+..|.++.... .+.+|.++|++++.++++|++.|+|.|++|++|+ +++|||++|.++ ++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~----~~~NAfa~G~~~~~~~ 117 (296)
T PRK02391 42 IVVIAGGFLLAQYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPKPRVAVADS----DVPNAFATGRSPKNAV 117 (296)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeC----CCCceEEecCCCCCcE
Confidence 344455556666777777766554 3467888999999999999999999999999995 689999999864 556
Q ss_pred EeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHH
Q 014430 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQH 341 (424)
Q Consensus 262 Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~ 341 (424)
|++++++++.+ |+||++||+|||+||++++|+.++.....+..+..+. .. ...++..++.++.....+..++..
T Consensus 118 V~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l-~~----~~~~~~~~~~~~~~~~~~~~~~~~ 191 (296)
T PRK02391 118 VCVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLI-VR----WGFYFGGFGGRGGGGGGGGILVVI 191 (296)
T ss_pred EEecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HH----HHHHhccccCCCCcccchHHHHHH
Confidence 88999999999 9999999999999999999999998776654433211 11 111112222211111011111112
Q ss_pred HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhh---------------CCCCCCC---hhhhh
Q 014430 342 TVIPI-QHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQEEN---------------LSAMNTD---PWYSA 401 (424)
Q Consensus 342 i~~~~-~~l~~~~~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n---------------~~~~~~~---~ly~~ 401 (424)
++.++ ..+..++.+.+||++||+||++|+++ |+|+++++||.|++.++ ...+.|+ +.+..
T Consensus 192 ~~~~~~~~~~~~l~~~~SR~rE~~AD~~Aa~ltg~p~~LasAL~KL~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~ 271 (296)
T PRK02391 192 LVSLVVWAISFLLIRALSRYREFAADRGAAIITGRPSALASALMKISGRMDRVPTEDLREAEGMNAFFIIPALSGGSLGR 271 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHcccccCCchhhcccHHHhhhcccCCCCcchHHH
Confidence 22222 22345678999999999999999998 57999999999999752 2223333 67899
Q ss_pred hhcCCCChHHHHHHccccCc
Q 014430 402 YHYSHPPLVERLAAIDEPDK 421 (424)
Q Consensus 402 ~~~sHP~l~eRi~~L~~~~~ 421 (424)
+++||||++|||++|++.++
T Consensus 272 l~sTHP~~~eRI~~L~~~~~ 291 (296)
T PRK02391 272 LFSTHPPLEKRIAQLEKLER 291 (296)
T ss_pred HhcCCcCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 6
>PRK03072 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.2e-37 Score=301.34 Aligned_cols=254 Identities=19% Similarity=0.210 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhhHhhhhhcc--cCccCCchhHHHHHHHHHH
Q 014430 151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLAS 228 (424)
Q Consensus 151 d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~--~~~pl~~~~L~~~i~~l~~ 228 (424)
+.++..++-..+.+.++.+. |++. ....+++.++.+++.++..+..|..+....+ ..+|.++|+|++.++++|+
T Consensus 6 ~~~~t~~l~~~~~~~~~~~g-~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la~ 81 (288)
T PRK03072 6 NGLKTALLLGGMSALIVFIG-ALFG---RTGLGIAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQAPAMYRIVRELST 81 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHHH
Confidence 44555555444444433332 3332 2223334445555666667777777666653 2567788999999999999
Q ss_pred HcCCCCCcEEEEeCCCCCCcccEEEEecC-CCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHH
Q 014430 229 SLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLL 307 (424)
Q Consensus 229 ~~g~~~~~i~v~d~s~rs~~~NA~~~G~~-~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~ 307 (424)
++|+|.|++|++|+ +.+|||++|.. ++..|++++++++.+ ++||++||+|||+||++++|+.++...+.+...+
T Consensus 82 ~~g~p~p~vyv~~~----~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i 156 (288)
T PRK03072 82 AARQPMPRLYISPT----AAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHVYNRDILISSVAGALASVI 156 (288)
T ss_pred HcCCCCCCEEEecC----CCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999996 56999999964 344699999999999 9999999999999999999999998776654332
Q ss_pred HHHHHHHHhcCchhhhhcCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHH
Q 014430 308 QFGGYTLVRNSTDLFRSFGFDT---QPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLV 383 (424)
Q Consensus 308 ~~~l~~~~~~~~~l~~~~g~~~---~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~ 383 (424)
.+. +.. ..++..+|.+. .+..+++.++. ++.++ ...++.+.+||++||+||++|+++ ++|+++++||.
T Consensus 157 ~~l--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~~~~~~~~~SR~rE~~AD~~A~~l~~~p~~La~AL~ 228 (288)
T PRK03072 157 TYL--ANM---AMFAGMFGGRRDNDGPNPLALLLVS-LLGPI--AATVIQLAISRSREYQADESGAELTGDPLALASALR 228 (288)
T ss_pred HHH--HHH---HHHHHHhccccccccchHHHHHHHH-HHHHH--HHHHHHHHHHhHHHHHHhHHHHHHhCCHHHHHHHHH
Confidence 211 111 11233333321 12233433322 22222 346778999999999999999998 56899999999
Q ss_pred HHHHhhCCCCCCC------------------hhhhhhhcCCCChHHHHHHccccCc
Q 014430 384 KLQEENLSAMNTD------------------PWYSAYHYSHPPLVERLAAIDEPDK 421 (424)
Q Consensus 384 kL~~~n~~~~~~~------------------~ly~~~~~sHP~l~eRi~~L~~~~~ 421 (424)
|++.++.+.+.++ ..+..+++|||++.|||++|++.+.
T Consensus 229 KL~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~l~sTHP~~~eRI~~L~~~~~ 284 (288)
T PRK03072 229 KISGGVQAAPLPPEPQLASQAHLMIANPFRAGGIGRLFSTHPPMADRIARLEQMAG 284 (288)
T ss_pred HHHhccccCCCCccccchhhhhhhhcCcccchHHHHHHcCCcCHHHHHHHHHHHhh
Confidence 9999876655433 2588999999999999999987654
No 7
>PRK04897 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.1e-36 Score=296.36 Aligned_cols=221 Identities=22% Similarity=0.291 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhhhhHhhhhhcccCccC---CchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCC-CceEe
Q 014430 188 FMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIV 263 (424)
Q Consensus 188 ~~~~~~~~~~~~~p~~i~plf~~~~pl---~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~-~~~Iv 263 (424)
+.+++.++..+..|. +....++.+|+ ++|+|++.++++|+++|+|.|++|++|+ +.+|||++|.++ ++.|+
T Consensus 49 ~~~~~~~~~~~~~~~-~~~~~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~----~~~NAfa~G~~~~~~~v~ 123 (298)
T PRK04897 49 IGVIYALIMIFQSTN-VVMSMNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDD----PSPNAFATGSSPKNAAVA 123 (298)
T ss_pred HHHHHHHHHHHhhHH-HHHHhCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecC----CCCceEEeccCCCCcEEE
Confidence 333444444444444 44555567777 5789999999999999999999999996 469999999875 45699
Q ss_pred EchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCC----CCCch--HHHHH
Q 014430 264 LYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGF----DTQPV--LIGLI 337 (424)
Q Consensus 264 l~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~----~~~~~--~i~l~ 337 (424)
+++++++.+ ++||++||+|||+||++|+|+.+++....+..++. ++...+.. ..++..++. +..+. .+...
T Consensus 124 vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (298)
T PRK04897 124 VTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAVALASAIT-LLSDIAGR-MMWWGGGSRRRDDDRDGGGLQIILL 200 (298)
T ss_pred eehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHH-HHHhcccccccccccccchhhHHHH
Confidence 999999999 99999999999999999999999887765443332 22221111 111111111 01111 11111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhCCCC----------CCChhh----
Q 014430 338 ---IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLG-YASALRAGLVKLQEENLSAM----------NTDPWY---- 399 (424)
Q Consensus 338 ---l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~lg-~~~~l~~aL~kL~~~n~~~~----------~~~~ly---- 399 (424)
++..++.|+. ..++.+++||++||+||++|++++ +|+++++||.|+++++.... .++|++
T Consensus 201 ~~~l~~~i~~~~~--~~ll~~~~SR~rE~~AD~~A~~lt~~p~~La~AL~KL~~~~~~~~~~~~~~~~~~i~~p~~~~~~ 278 (298)
T PRK04897 201 IVSLLLLILAPLA--ATLIQLAISRQREYLADASSVELTRNPQGLISALEKISNSQPMKHPVDDASAALYISDPLKKKGL 278 (298)
T ss_pred HHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccccccChHHHHhccCCCcccchH
Confidence 1222333332 356678999999999999999995 58999999999998876432 135554
Q ss_pred hhhhcCCCChHHHHHHccc
Q 014430 400 SAYHYSHPPLVERLAAIDE 418 (424)
Q Consensus 400 ~~~~~sHP~l~eRi~~L~~ 418 (424)
..+++||||+.|||++|++
T Consensus 279 ~~lfsTHP~~~eRI~~L~~ 297 (298)
T PRK04897 279 SKLFDTHPPIEERIERLKN 297 (298)
T ss_pred HHHHcCCcCHHHHHHHHHc
Confidence 7899999999999999985
No 8
>PRK02870 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.1e-35 Score=288.98 Aligned_cols=219 Identities=21% Similarity=0.305 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhhhhHhhhhhc-------ccCccCCchhHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCcccEEEEecC-C
Q 014430 188 FMFVLSLVMMTLYPVLIAPLF-------NKFTPLPEGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGFF-K 258 (424)
Q Consensus 188 ~~~~~~~~~~~~~p~~i~plf-------~~~~pl~~~~L~~~i~~l~~~~g~~-~~~i~v~d~s~rs~~~NA~~~G~~-~ 258 (424)
+.++..++.++..+.++.... ++++|+++++|++.++++++++|+| .|++|++|+ +++|||++|.+ +
T Consensus 79 ~~~~~~~~~y~~~~~~~l~~~~a~~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~----~~~NAFA~G~~~~ 154 (336)
T PRK02870 79 VAVISILVTFQNFDKIMLSGTEYKEITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDA----PYMNAFASGYSEK 154 (336)
T ss_pred HHHHHHHHHHHhhHHHHHHHcCCEEcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcC----CCCceEEecCCCC
Confidence 333444455555555443332 4566777899999999999999999 899999997 47999999986 4
Q ss_pred CceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCC---C-chHH
Q 014430 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDT---Q-PVLI 334 (424)
Q Consensus 259 ~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~---~-~~~i 334 (424)
+++|+++|++++.+ ++||++||+|||+||++|+|+.+++....+..++.+. ... .++..+|... . +..+
T Consensus 155 ~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~-~~~-----~~~~~~g~~~~~~~~~~~~ 227 (336)
T PRK02870 155 SAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIV-ADF-----LFYSFMGNRRNSGANRARM 227 (336)
T ss_pred CcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-HHH-----HHHHHhcCCcccccchhHH
Confidence 68999999999999 9999999999999999999998877665543322111 111 1222233311 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhhCCCCC--------C----------
Q 014430 335 GLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQEENLSAMN--------T---------- 395 (424)
Q Consensus 335 ~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n~~~~~--------~---------- 395 (424)
++.++..+. | .+..++.+++||.+||+||++|+++ ++|+++++||.|++.+|.+.+. .
T Consensus 228 ~~l~l~~~~-~--~~~~ll~~~iSR~rEy~AD~~Aa~ltg~p~aLasAL~KL~~~~~~~~~~~~~~~~~~~~~~a~~~i~ 304 (336)
T PRK02870 228 IILILRYVL-P--ILTVLLMLFLSRTREYMADAGAVELMRDNEPMARALQKISNDHAQNDEQYAYKHTDHESTRRAAYLF 304 (336)
T ss_pred HHHHHHHHH-H--HHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHhccccCccccccccccCChhhhhhhcc
Confidence 332222222 2 2345678999999999999999999 5689999999999988766441 0
Q ss_pred Ch------hhhhhhcCCCChHHHHHHccccC
Q 014430 396 DP------WYSAYHYSHPPLVERLAAIDEPD 420 (424)
Q Consensus 396 ~~------ly~~~~~sHP~l~eRi~~L~~~~ 420 (424)
+| -...+++||||++|||++|+...
T Consensus 305 ~p~~~~~~~~~~LfsTHPp~e~RI~rL~~~~ 335 (336)
T PRK02870 305 DPAGISPGSLSDAFSTHPSIENRLAALGGKL 335 (336)
T ss_pred CCcccccccHhHHHcCCCCHHHHHHHHhhcc
Confidence 11 13568899999999999998653
No 9
>PRK05457 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.9e-35 Score=283.83 Aligned_cols=215 Identities=23% Similarity=0.228 Sum_probs=153.0
Q ss_pred HHHHHHHhhhhHhhhhhcccCcc----CCch--hHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCc-eEe
Q 014430 191 VLSLVMMTLYPVLIAPLFNKFTP----LPEG--ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNK-RIV 263 (424)
Q Consensus 191 ~~~~~~~~~~p~~i~plf~~~~p----l~~~--~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~-~Iv 263 (424)
+..++..+..|.++....+ .++ .+++ .|++.++++|++.|+|.|++|++|+ +++|||++|.++++ .|+
T Consensus 46 ~~~~~~~~~~~~i~~~~~~-a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~----~~~NAfa~G~~~~~~~V~ 120 (284)
T PRK05457 46 GGSFISLLMSKWMAKRSTG-AEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYHS----PEINAFATGASKNNSLVA 120 (284)
T ss_pred HHHHHHHHHHHHHHHHhcC-CeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeC----CCceEEEecCCCCCeEEE
Confidence 3445556666766655543 333 3333 4899999999999999999999996 57999999986544 577
Q ss_pred EchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHH-HHHHHHH--HHHHHhcCchhhhhcCCCCCch---HHHHH
Q 014430 264 LYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV-LTLLQFG--GYTLVRNSTDLFRSFGFDTQPV---LIGLI 337 (424)
Q Consensus 264 l~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~-~~~~~~~--l~~~~~~~~~l~~~~g~~~~~~---~i~l~ 337 (424)
+++++++.+ |+||++||+|||+||++++|+.++.+...+ ..++.+. ++..+... ... +-.+.+. .++..
T Consensus 121 vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~ 195 (284)
T PRK05457 121 VSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDR--FVS--GNEEGNGIGYFIVSI 195 (284)
T ss_pred eehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc--cCcccccHHHHHHHH
Confidence 888899999 999999999999999999999987655443 2222221 11111111 000 1011111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhCCCCCCChh----------hhhhhcCCC
Q 014430 338 IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPW----------YSAYHYSHP 407 (424)
Q Consensus 338 l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~lg~~~~l~~aL~kL~~~n~~~~~~~~l----------y~~~~~sHP 407 (424)
++. ..+..+.+++.+++||++||+||++|+++++|+++++||.|+.+++. .+.+++. ++.+++|||
T Consensus 196 l~~---~~~~~~~~ll~~~~SR~rEy~AD~~Aa~ltgp~~L~~AL~KL~~~~~-~~~~~~~~~~~i~~~~~~~~lfsTHP 271 (284)
T PRK05457 196 VLE---IVFGILASIIVMWFSRHREFRADAGGAKLAGREKMIAALQRLKTSYE-PQLPGSMAAFGINGKSGLSELFMSHP 271 (284)
T ss_pred HHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCc-cCCChHHHHhhccCchhHHHHHcCCc
Confidence 111 12334567788999999999999999999889999999999998876 3345443 788999999
Q ss_pred ChHHHHHHcccc
Q 014430 408 PLVERLAAIDEP 419 (424)
Q Consensus 408 ~l~eRi~~L~~~ 419 (424)
|++|||++|++.
T Consensus 272 ~~~eRI~~L~~~ 283 (284)
T PRK05457 272 PLEKRIAALRSG 283 (284)
T ss_pred CHHHHHHHHHhC
Confidence 999999999864
No 10
>PRK01345 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.1e-35 Score=288.83 Aligned_cols=223 Identities=21% Similarity=0.297 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhccc--CccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecC-CCce
Q 014430 185 LWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKR 261 (424)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~i~plf~~--~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~-~~~~ 261 (424)
..++.+++.++..+..|.++.+.++. .+|.++|+|++.++++|++.|+|.|++|++|+ +++|||++|.+ ++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~----~~~NAFa~G~~~~~~~ 108 (317)
T PRK01345 33 ALVIAAGMNLFSYWNSDKMVLRMYGAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDN----PQPNAFATGRNPENAA 108 (317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHcCCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcC----CCcceEEecCCCCCeE
Confidence 34555666778888889999999986 77888999999999999999999999999996 57999999985 4678
Q ss_pred EeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHH-HHHHHHHhcCchhhhhcCCC-CCc-hHHHHHH
Q 014430 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQ-FGGYTLVRNSTDLFRSFGFD-TQP-VLIGLII 338 (424)
Q Consensus 262 Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~g~~-~~~-~~i~l~l 338 (424)
|+++++|++.+ ++||++||+|||+||++++|+.++.+...+...+. +..+..+... ...+ ..+ ..++..
T Consensus 109 V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~i~~~- 180 (317)
T PRK01345 109 VAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFGG------NRENNNGPLGLVGTL- 180 (317)
T ss_pred EEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC------CcccccchHHHHHHH-
Confidence 99999999999 99999999999999999999999877655422211 1111111111 0000 111 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhhCCCCCC--------------Ch----hh
Q 014430 339 FQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKL-GYASALRAGLVKLQEENLSAMNT--------------DP----WY 399 (424)
Q Consensus 339 ~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~l-g~~~~l~~aL~kL~~~n~~~~~~--------------~~----ly 399 (424)
+..++.|+. ..++.+.+||++|++||++|+++ ++|++++++|.|+++.+...+.. +| -.
T Consensus 181 ~~~~~~~~~--~~l~~~~~SR~rE~~AD~~A~~ltg~p~~L~~AL~KL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (317)
T PRK01345 181 AAMIVAPLA--AMLVQMAISRTREYAADRRGAEICGNPLWLASALGKIERGAHGVPNEEAERNPATAHMFIINPLSGEGM 258 (317)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCcccccccChHHHHHHhcCCccccch
Confidence 222333332 23567889999999999999997 78999999999999765321110 11 13
Q ss_pred hhhhcCCCChHHHHHHccccCc
Q 014430 400 SAYHYSHPPLVERLAAIDEPDK 421 (424)
Q Consensus 400 ~~~~~sHP~l~eRi~~L~~~~~ 421 (424)
..+++|||+++|||++|++.++
T Consensus 259 ~~lfsTHP~~~eRI~~L~~~~~ 280 (317)
T PRK01345 259 DNLFSTHPATENRIAALQRMAG 280 (317)
T ss_pred hHHhcCCcChHHHHHHHHHHHH
Confidence 4688999999999999987543
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.97 E-value=1.4e-32 Score=257.68 Aligned_cols=208 Identities=40% Similarity=0.579 Sum_probs=121.4
Q ss_pred HHHHHHhhhhHhhhhhcccCccCCchhHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHH
Q 014430 192 LSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSL--KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI 269 (424)
Q Consensus 192 ~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~--g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll 269 (424)
...++..+++.++.|++++++|.++++|++.+++++++. +.|.++++++++ +..|||++|.+++++|+|+++++
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~----~~~NA~~~g~~~~~~I~v~~~ll 81 (226)
T PF01435_consen 6 VSLLLAFIGPPLIAPLFNKFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDS----PSPNAFATGGGPRKRIVVTSGLL 81 (226)
T ss_dssp TTSTTGHHCCCCHCCHCTC--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE------SSEEEEEETTTC--EEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcC----CCCcEEEEccCCCcEEEEeChhh
Confidence 344556667888999999999999999999999999999 888889999997 45999999998889999999999
Q ss_pred hhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 014430 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHL 349 (424)
Q Consensus 270 ~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l 349 (424)
+.+ ++||+++|||||+||++++|..+++....+..++.+.....+..........++.... + ..+..+
T Consensus 82 ~~~-~~~el~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~ 149 (226)
T PF01435_consen 82 ESL-SEDELAAVLAHELGHIKHRHILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDIL---G--------ILIAFL 149 (226)
T ss_dssp HHS-SHHHHHHHHHHHHHHHHTTHCCCCCCHHH-HHHHHHHHHT-----HHHHHHHH---------------------HH
T ss_pred hcc-cHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc---h--------hhHHHH
Confidence 999 9999999999999999999998886655554444333333323222222222111000 0 000133
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHcCChHHH-----------HHHHHHHHHhhCCCCCCChhhhhhhcCCCChHHHHHH
Q 014430 350 VSFGLNLVSRSFEFQADAFAKKLGYASAL-----------RAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAA 415 (424)
Q Consensus 350 ~~~~~~~~sR~~E~~AD~~A~~lg~~~~l-----------~~aL~kL~~~n~~~~~~~~ly~~~~~sHP~l~eRi~~ 415 (424)
...+.+.+||.+|++||++|++++++++. .+++.++...+.....++..+..+++|||++.+||++
T Consensus 150 ~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~~a~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~ 226 (226)
T PF01435_consen 150 FQLLTNAFSRRQEYEADRYAARLGGDPALLARALYKPAAAISALEKLAEANSMRPDSDWRYSSLFSTHPSTEERIAA 226 (226)
T ss_dssp STT------HHHHHHHHHHHHHH------HHHTTS-TTHHHHHHHHHT-----------------------HHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHhcCCcHHHHHhCCCHHHHHHHHHHHHHHhccccCCccccchhcCCCcCHHHHhCc
Confidence 45678999999999999999999776665 7888888876666677777888999999999999986
No 12
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-27 Score=232.90 Aligned_cols=190 Identities=29% Similarity=0.356 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCcccEEEEecC-CCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHH
Q 014430 218 ELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (424)
Q Consensus 218 ~L~~~i~~l~~~~g~~-~~~i~v~d~s~rs~~~NA~~~G~~-~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~ 295 (424)
.+...+++++.+.+.+ .+++++.++ ..+|||++|.+ ++++|++++++++.+ |+||++||+|||+||++++|..
T Consensus 100 ~~~~~v~~~a~~~~~~~~~~v~i~~~----~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~ 174 (302)
T COG0501 100 VLLLKVAELARQAGIPHMPEVYILET----PQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTL 174 (302)
T ss_pred HHHHHHHHHHHHCCCCCCCeeEEecC----CCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHH
Confidence 3445899999999999 889999994 78999999975 679999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCh
Q 014430 296 YSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYA 375 (424)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~lg~~ 375 (424)
++..+........+.+........... + ..+................+.+.+||.+|++||++|+++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~~ 244 (302)
T COG0501 175 VRLTLRGLLASAFVLLATLALAAGLLG------E----AALALLLLLLLLALFLATLLVLAFSRKREYEADRFAAKLTGP 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc------c----hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhchhhccCh
Confidence 966555544433333333322211111 0 111111112223334567889999999999999999999879
Q ss_pred HHHHHHHHHHHHhh----CCCCCCChhh----hhhhcCCCChHHHHHHccccCcc
Q 014430 376 SALRAGLVKLQEEN----LSAMNTDPWY----SAYHYSHPPLVERLAAIDEPDKK 422 (424)
Q Consensus 376 ~~l~~aL~kL~~~n----~~~~~~~~ly----~~~~~sHP~l~eRi~~L~~~~~~ 422 (424)
+.++++|.|+...+ .....+++.+ ..+++|||++.+||++|++..++
T Consensus 245 ~~l~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~stHP~~~~Ri~~L~~~~~~ 299 (302)
T COG0501 245 EKLASALQKLARLSGRANSKAFIASGFSGGRLQALFSTHPPLAERIAALRQLALT 299 (302)
T ss_pred HHHHHHHHHHHhhhcccchhhhhcCcccccchHHHHhcCCCHHHHHHHHHHHHHh
Confidence 99999999999854 2333444444 67899999999999999987654
No 13
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.73 E-value=8.6e-17 Score=159.86 Aligned_cols=189 Identities=22% Similarity=0.287 Sum_probs=128.1
Q ss_pred hhhcccCccCCchhHHHHHHHHHH----HcCCCCC--cEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHH
Q 014430 205 APLFNKFTPLPEGELREKIEKLAS----SLKFPLK--KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEI 278 (424)
Q Consensus 205 ~plf~~~~pl~~~~L~~~i~~l~~----~~g~~~~--~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei 278 (424)
..+-+....++|++|.+.|+++.. ..|.+.. +++++++ ...|||++ .+++|+|..+++...+||+|+
T Consensus 58 ~Qlr~~~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d----~~iNAFA~---~Gg~v~vntGLll~ae~esEl 130 (484)
T COG4783 58 AQLRGSVPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVND----DSINAFAT---PGGYVVVNTGLLLTAENESEL 130 (484)
T ss_pred HHhccCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC----Cccchhhc---CCceEEEehHHHHhcCCHHHH
Confidence 344455556789999988876554 4565533 6677776 67999998 358999999999988899999
Q ss_pred HHHHHHHHhhhhcccHHHHHHHHHHH----HH-HHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 014430 279 VAVIAHELGHWKLNHTMYSFIAVQVL----TL-LQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFG 353 (424)
Q Consensus 279 ~aVLaHElgH~~~~h~~~~~~~~~~~----~~-~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~ 353 (424)
.+|||||+||+..+|..+.+=-..-. .. +...+....... ....+++.. .. .....-
T Consensus 131 agViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~-----------~ag~a~iag------~~-a~~~~g 192 (484)
T COG4783 131 AGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGA-----------DAGMAGIAG------AL-AGAAQG 192 (484)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCc-----------cccHHHHHH------HH-HHhhhh
Confidence 99999999999999999887553111 11 111111111110 111122210 00 011112
Q ss_pred HHHHhHHHHHHHHHHHHHc----CC-hHHHHHHHHHHHHhhCCCCCCChhhhhhhcCCCChHHHHHHccccCcc
Q 014430 354 LNLVSRSFEFQADAFAKKL----GY-ASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKK 422 (424)
Q Consensus 354 ~~~~sR~~E~~AD~~A~~l----g~-~~~l~~aL~kL~~~n~~~~~~~~ly~~~~~sHP~l~eRi~~L~~~~~~ 422 (424)
.-.+||..|.+||++++.. |+ |.+|.+.+.|+.......-.|++ |..|||-..+||..+++.+++
T Consensus 193 ~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~----yl~THPlp~~RIa~lr~ra~q 262 (484)
T COG4783 193 QLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPE----YLLTHPLPEERIADLRNRAEQ 262 (484)
T ss_pred hhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCCh----HHhcCCCchhHHHHHHHHHHh
Confidence 4679999999999999876 65 79999999999976544434443 568999999999999865544
No 14
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.72 E-value=4.4e-16 Score=152.44 Aligned_cols=165 Identities=23% Similarity=0.352 Sum_probs=130.7
Q ss_pred hcccCccCCchhHHHHHHHHHHHcCCCCC-cEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHH
Q 014430 207 LFNKFTPLPEGELREKIEKLASSLKFPLK-KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHE 285 (424)
Q Consensus 207 lf~~~~pl~~~~L~~~i~~l~~~~g~~~~-~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHE 285 (424)
+..+.++.++++..+.+++++++.|++.+ ++++.+ .-..++++|+. +.+|++++++.+.+ +++|+++|++||
T Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~-----~i~sP~~~G~~-~p~I~lP~~~~~~~-~~~el~~il~HE 203 (299)
T PF05569_consen 131 LLRKARPVEDEELQALLEECKEELGIKRPIRIRVSS-----GISSPFVFGFL-RPVIVLPESLLEDL-SEEELRAILLHE 203 (299)
T ss_pred HHHhccccCcHHHHHHHHHHHHHhCCCCceEEEEcC-----CCCCCeeecCc-ceEEEecCcccccc-CHHHHHHHHHHH
Confidence 45667889999999999999999998643 344333 34577889986 69999999999999 999999999999
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014430 286 LGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQA 365 (424)
Q Consensus 286 lgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~A 365 (424)
+.|+|++|.+.+.+...+. .+.+++++...+...+.+.+|+.|
T Consensus 204 l~Hikr~D~~~~~l~~l~~-------------------------------------~l~WfnP~~~~~~~~~~~~~E~~c 246 (299)
T PF05569_consen 204 LAHIKRRDLLWKLLAELLC-------------------------------------ALHWFNPLVWLLRRRIRRDRELAC 246 (299)
T ss_pred HHHHHCCChHHHHHHHHHH-------------------------------------HHHHhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999998665542 223455666778899999999999
Q ss_pred HHHHHHc---CChHHHHHHHHHHHHhhCCCCCCChhhhhhhcCCCChHHHHHHc
Q 014430 366 DAFAKKL---GYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAI 416 (424)
Q Consensus 366 D~~A~~l---g~~~~l~~aL~kL~~~n~~~~~~~~ly~~~~~sHP~l~eRi~~L 416 (424)
|+.+.+. ++..+.+++|.++++.+.... ....-..+..+.-.+++||++|
T Consensus 247 D~~vl~~l~~~~~~~Y~~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~lk~RI~~I 299 (299)
T PF05569_consen 247 DEAVLRNLGKEERKAYAETLLKVAKRSQQFK-RPPLASSFAFSKSQLKRRIKMI 299 (299)
T ss_pred hHHHHHhcCchhHHHHHHHHHHHHHhhcCCC-cchhhhhccCChHHHHHHHHhC
Confidence 9999988 346789999999998765422 2333344456889999999875
No 15
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.9e-14 Score=133.28 Aligned_cols=154 Identities=20% Similarity=0.281 Sum_probs=110.7
Q ss_pred cEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Q 014430 236 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLV 315 (424)
Q Consensus 236 ~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~ 315 (424)
+|.|+|+ ..+|||+. +.++|+++.+++..++++||+++|||||+||-..+|...++....+..++.+.++...
T Consensus 240 eihVVnd----PipNAFvL---PgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVarH~AEki~k~~~~siLgLvlyt~~ 312 (424)
T KOG2661|consen 240 EIHVVND----PIPNAFVL---PGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVARHAAEKIGKVHLLSILGLVLYTMI 312 (424)
T ss_pred EEEEecC----CCCceeec---cCCeEEEEechhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6778887 56999887 4788999999999998999999999999999999999999877666554444333322
Q ss_pred hcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhh
Q 014430 316 RNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHL-VSFGLNLVSRSFEFQADAFAKKL-----GYASALRAGLVKLQEEN 389 (424)
Q Consensus 316 ~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l-~~~~~~~~sR~~E~~AD~~A~~l-----g~~~~l~~aL~kL~~~n 389 (424)
... . +=..+ -.++..-+||++|.|||-.+.-+ -+|.+-....+|+....
T Consensus 313 ~a~-----------~--------------~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvwErM~~~e 367 (424)
T KOG2661|consen 313 WAI-----------C--------------PNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVWERMEFVE 367 (424)
T ss_pred hhc-----------c--------------chHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHHHHHHHhh
Confidence 211 0 00011 12345678999999999998766 35777777778887543
Q ss_pred CCCCCCChhhhhhhcCCCChHHHHHHccccCccC
Q 014430 390 LSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKE 423 (424)
Q Consensus 390 ~~~~~~~~ly~~~~~sHP~l~eRi~~L~~~~~~~ 423 (424)
.....+ -...|.+|||+-.+|++.+++.-+|.
T Consensus 368 gqmg~~--~~~eflSTHPSskkRie~~~~lLpqA 399 (424)
T KOG2661|consen 368 GQMGQP--KMPEFLSTHPSSKKRIEYLDRLLPQA 399 (424)
T ss_pred hhcCCC--CCchhhhcCCCccchhHHHHHhchHH
Confidence 222111 13446799999999999998765553
No 16
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=99.46 E-value=7e-12 Score=119.26 Aligned_cols=156 Identities=22% Similarity=0.266 Sum_probs=108.6
Q ss_pred chhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHH
Q 014430 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~ 295 (424)
+.|.++.++++.++...+ ++.+ ..|+ ...+..++|.+ +.+|++++.+.+++ ++||++.|++||++|.|++|.+
T Consensus 135 e~d~~~~~~~~~~~~~~k--~i~i-r~s~--~i~~P~v~gl~-kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i 207 (337)
T COG4219 135 EVDKRKIVTILKNHQYKK--HILI-RKSK--AIDGPMVFGLV-KPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAI 207 (337)
T ss_pred cccHHHHHHHHHHhhhcc--CeeE-eecc--cCCCceeeccC-cceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHH
Confidence 345667777777666543 4443 3333 55788889987 69999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCh
Q 014430 296 YSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYA 375 (424)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~~lg~~ 375 (424)
.+.+...+. ++-++++++.+....+.-++|.+||+.+...-.+
T Consensus 208 ~n~i~~~~~-------------------------------------~l~WfNP~v~l~~~~~~~D~E~aCDa~vL~~~~~ 250 (337)
T COG4219 208 INLIVVVLG-------------------------------------VLFWFNPLVHLGKRKIRIDQEIACDAAVLARINP 250 (337)
T ss_pred HHHHHHHHh-------------------------------------HHhhcChHHHHHHHHHHhhHHHHhhHHHHhccCh
Confidence 887543332 1223455566678889999999999999988533
Q ss_pred ---HHHHHHHHHHHHhhCCCCCCChhhhhhhcCCCChHHHHHHccc
Q 014430 376 ---SALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDE 418 (424)
Q Consensus 376 ---~~l~~aL~kL~~~n~~~~~~~~ly~~~~~sHP~l~eRi~~L~~ 418 (424)
...++++.++... .+.++-.+.+ ...-.-++.||+..+..
T Consensus 251 ~err~YaEsil~~l~a-~s~~~l~~~~--~~g~nk~lk~Rl~~i~~ 293 (337)
T COG4219 251 EERRTYAESILKLLLA-FSNPPLACHW--PAGGNKPLKERLIMIKE 293 (337)
T ss_pred HHHHHHHHHHHHHHhc-ccCCCccccc--cccccchHHHHHHHhhC
Confidence 4566777775432 2223222222 12334567788888754
No 17
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=111.32 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=111.7
Q ss_pred CchhHHHHHHHHHHHcCC---CCC---cEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhh
Q 014430 215 PEGELREKIEKLASSLKF---PLK---KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGH 288 (424)
Q Consensus 215 ~~~~L~~~i~~l~~~~g~---~~~---~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH 288 (424)
.|+.++..+.++..++-- ++. ++-|+|. ...|||.. +...++|+.+|+....|..|+.|||+||+||
T Consensus 62 ~D~Kler~Vari~g~lt~~S~~p~q~YriTilnS----P~INAFAL---PGGYlYitRGLlAland~sEvAAVl~HEmgH 134 (479)
T COG4784 62 RDPKLERMVARIVGALTAVSENPQQTYRITILNS----PNINAFAL---PGGYLYITRGLLALANDSSEVAAVLAHEMGH 134 (479)
T ss_pred CCHHHHHHHHHHHhHhhhhccCCCceEEEEEecC----CCcccccc---CCceEEEehhHHHHcCCHHHHHHHHHhhhhh
Confidence 466777766666554422 222 5667774 78999765 4799999999999887889999999999999
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014430 289 WKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAF 368 (424)
Q Consensus 289 ~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~ 368 (424)
.-.+|-..+.-......+.. ... -+..|.+... -..+ +.+ ......+||.+|.|||..
T Consensus 135 VtAnHgi~rQ~~e~a~~ia~-----rvv-----a~vl~~~~ag-k~A~-----~rG------klrla~fsRnqELqAD~i 192 (479)
T COG4784 135 VTANHGIQRQQREAAEVIAS-----RVV-----AEVLGSDAAG-KQAL-----IRG------KLRLAQFSRNQELQADAI 192 (479)
T ss_pred eecchhHHHHHHHHHHHHHH-----HHH-----HHHhCCcchh-hHHH-----hhh------hHHHhhhccchhhhhhhh
Confidence 99999987764443322111 100 0111111000 0000 111 223578999999999999
Q ss_pred HHHc----CC-hHHHHHHHHHHHHhhC-CCCC--CChhhhhhhcCCCChHHHHHHcc
Q 014430 369 AKKL----GY-ASALRAGLVKLQEENL-SAMN--TDPWYSAYHYSHPPLVERLAAID 417 (424)
Q Consensus 369 A~~l----g~-~~~l~~aL~kL~~~n~-~~~~--~~~ly~~~~~sHP~l~eRi~~L~ 417 (424)
++++ || |-+.++.|..|+.... +..+ .|. -..++.|||...+||+-..
T Consensus 193 G~~~lgeAGYDP~A~~rfl~sm~ay~~F~s~~g~adq-sldfl~sHPntpqRiqla~ 248 (479)
T COG4784 193 GIKMLGEAGYDPYAAARFLQSMAAYTDFRSVSGAADQ-SLDFLASHPNTPQRIQLAR 248 (479)
T ss_pred hHHHHHhcCCChHHHHHHHHHHHhhhhhcccCcchhh-hcchhhcCCCChHHHHHHH
Confidence 9988 54 7888888888875321 1111 111 1347799999999998654
No 18
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=97.81 E-value=0.00042 Score=67.18 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCCC--CCcEEEEeCCCCCCcc------cEEEEecCCCceEeEchhHHhhc----C--ChhHHHHHHHHHH
Q 014430 221 EKIEKLASSLKFP--LKKLFVVDGSTRSSHS------NAYMYGFFKNKRIVLYDTLIQQC----K--NDEEIVAVIAHEL 286 (424)
Q Consensus 221 ~~i~~l~~~~g~~--~~~i~v~d~s~rs~~~------NA~~~G~~~~~~Ivl~d~Ll~~l----~--~~~Ei~aVLaHEl 286 (424)
+...+..++.|.+ .|++.+.+++.+|... |||. +|..++|++..+.++.+ . .+--...|||||.
T Consensus 101 ~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFY--Cp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEy 178 (292)
T PF04228_consen 101 DVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFY--CPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEY 178 (292)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEe--CCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3445555666665 6788877776555432 3322 24578999987766544 1 1223577999999
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014430 287 GHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQAD 366 (424)
Q Consensus 287 gH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD 366 (424)
||...+..=..- ... .. .. +.+ ..-.+..||+.|.|||
T Consensus 179 GHHVQ~l~Gil~---~~~---------------~~-~~-~~~----------------------~~~~~~~svr~ELQAD 216 (292)
T PF04228_consen 179 GHHVQNLLGILD---AVR---------------QA-QQ-GRS----------------------PAEANELSVRLELQAD 216 (292)
T ss_pred HHHHHHHhhhHH---HHH---------------HH-hh-ccC----------------------ccccchHHHHHHHHHH
Confidence 996443221110 000 00 00 000 0112677899999999
Q ss_pred HHHHHc-C--------ChHHHHHHHHHHHH--------hhCCCCCCChhhhhhhcCCCChHHHHHHccc
Q 014430 367 AFAKKL-G--------YASALRAGLVKLQE--------ENLSAMNTDPWYSAYHYSHPPLVERLAAIDE 418 (424)
Q Consensus 367 ~~A~~l-g--------~~~~l~~aL~kL~~--------~n~~~~~~~~ly~~~~~sHP~l~eRi~~L~~ 418 (424)
.||--. + .+.++.+++..... .......||. .+|=+-.+|.+..++
T Consensus 217 C~AGvw~~~~~~~~~l~~~di~~al~aa~aiGDD~iq~~~~g~v~pds------~tHGSs~qR~~Wf~~ 279 (292)
T PF04228_consen 217 CFAGVWAGHAAEDGSLTPGDIEEALNAASAIGDDRIQKRAGGRVVPDS------FTHGSSEQRVRWFQR 279 (292)
T ss_pred HHHHHHhhhccccCCcCHHHHHHHHHHHHHhcChHhhhhcCCCCCCCC------cCcCCHHHHHHHHHH
Confidence 997543 1 12455555554332 2222344553 589999999987654
No 19
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=97.35 E-value=0.0018 Score=53.51 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=27.4
Q ss_pred CceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHH
Q 014430 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSF 298 (424)
Q Consensus 259 ~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~ 298 (424)
.+.|++... + ++++-..++|||+||+..+|.....
T Consensus 28 ~~~I~in~~----~-~~~~~~f~laHELgH~~~~~~~~~~ 62 (122)
T PF06114_consen 28 NPIIFINSN----L-SPERQRFTLAHELGHILLHHGDETF 62 (122)
T ss_dssp TTEEEEESS----S--HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCEEEECCC----C-CHHHHHHHHHHHHHHHHhhhccccc
Confidence 678888886 4 8899999999999999888776543
No 20
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=97.28 E-value=0.00061 Score=62.48 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhhhcccHHHH
Q 014430 276 EEIVAVIAHELGHWKLNHTMYS 297 (424)
Q Consensus 276 ~Ei~aVLaHElgH~~~~h~~~~ 297 (424)
--+..+++||++|+..+|....
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~~ 120 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGDS 120 (206)
T ss_pred HHHHHHHHHHHHHHHHcCcccc
Confidence 4567999999999999998643
No 21
>PRK09672 phage exclusion protein Lit; Provisional
Probab=97.03 E-value=0.0017 Score=62.17 Aligned_cols=80 Identities=26% Similarity=0.258 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 014430 275 DEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGL 354 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~~ 354 (424)
..-+..|+.||++|...+|.... .
T Consensus 162 l~A~a~i~~HEiaHv~~~h~~~~--------------------------------------------------------~ 185 (305)
T PRK09672 162 LCALAWILLHEIAHVEFQHSSLE--------------------------------------------------------S 185 (305)
T ss_pred HHHHHHHHHHHHHHHHhcccccc--------------------------------------------------------C
Confidence 45678999999999999987531 1
Q ss_pred HHHhHHHHHHHHHHHHHc--C--C---hH-----HHHHHHHHHHHhhCCCCCCChhhhhhhcCCCChHHHHHHc
Q 014430 355 NLVSRSFEFQADAFAKKL--G--Y---AS-----ALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAI 416 (424)
Q Consensus 355 ~~~sR~~E~~AD~~A~~l--g--~---~~-----~l~~aL~kL~~~n~~~~~~~~ly~~~~~sHP~l~eRi~~L 416 (424)
+..+++.|.+||.||-+. . + ++ +.+-++.-++..-..+- .....|||++.+||.+.
T Consensus 186 ~e~s~~eE~eaDs~At~~il~~~~~~a~s~Kr~vgIaia~l~l~~l~~~~~------~~g~~tHP~~~~RI~a~ 253 (305)
T PRK09672 186 NEDSIQEEKEADSYATNWLLSKSEKYAPSKKRSVGIAIALLFLQELELENK------SCGKGTHPDADQRIFAN 253 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccccHHHhhhHHHHHHHHHHHHHhcccc------CCCCCCCCCHHHHHHHh
Confidence 445688999999999987 1 1 11 12233333333221111 12246999999999874
No 22
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=96.75 E-value=0.0036 Score=58.53 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecC-CCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHH
Q 014430 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (424)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~-~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~ 295 (424)
..+...+...+++.|.+...+.+-+.++|. |-+ ..+ .+..+..+... +++.+..|++||++|.+..+.-
T Consensus 123 ~~l~~~~~~~~~~l~~~~~~~~ik~~k~~W--------GScs~~~-~i~~~~~l~~~-p~~~i~YVvvHELaHLke~nHs 192 (223)
T COG1451 123 EILEIRLKEYAKKLGVPPRAIKLKNMKRRW--------GSCSKAG-EIRFNWRLVMA-PEEVIDYVVVHELAHLKEKNHS 192 (223)
T ss_pred HHHHHHHHHHHHHhCCCccceeeeecccee--------eeecCCC-cEEeehhhhcC-CHHHHHHHHHHHHHHHhhhhcc
Confidence 456667788889999998888888776543 433 234 55555566678 9999999999999999998865
Q ss_pred HHH
Q 014430 296 YSF 298 (424)
Q Consensus 296 ~~~ 298 (424)
+.+
T Consensus 193 ~~F 195 (223)
T COG1451 193 KRF 195 (223)
T ss_pred HHH
Confidence 554
No 23
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=96.69 E-value=0.0036 Score=57.57 Aligned_cols=71 Identities=28% Similarity=0.326 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEec-CCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHH
Q 014430 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF-FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (424)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~-~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~ 295 (424)
..+.+.+...++++|++.+++.+-+...| .|- ..++.|-+...|+. + +++-++.|+.||++|.++.+.-
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~i~ir~~ksr--------WGsc~~~~~I~ln~~L~~-~-P~~~idYVvvHEL~Hl~~~nHs 181 (205)
T PF01863_consen 112 EYLPERLKKYAKKLGLPPPKIKIRDMKSR--------WGSCSSKGNITLNWRLVM-A-PPEVIDYVVVHELCHLRHPNHS 181 (205)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeehhhc--------cccCCCCCcEEeeccccc-C-CccHHHHHHHHHHHHhccCCCC
Confidence 45667788889999999999998776433 443 34678888888775 6 8999999999999999876654
Q ss_pred HH
Q 014430 296 YS 297 (424)
Q Consensus 296 ~~ 297 (424)
+.
T Consensus 182 ~~ 183 (205)
T PF01863_consen 182 KR 183 (205)
T ss_pred HH
Confidence 44
No 24
>PRK04351 hypothetical protein; Provisional
Probab=96.60 E-value=0.0073 Score=52.80 Aligned_cols=70 Identities=21% Similarity=0.470 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHHH-cCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhh
Q 014430 215 PEGELREKIEKLASS-LKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (424)
Q Consensus 215 ~~~~L~~~i~~l~~~-~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~ 289 (424)
.+.||.+.+++++.. .+-|.+.-..++..-|++ .-+|. .++..|-+...+++.. +++++..||+||+.|+
T Consensus 2 ~~~~l~~l~~~~s~~~F~~~f~~~v~~n~Rlrtt-gG~~~---l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 2 TNQELQRLVEEISLEYFGKPFRHQAYFNKRLRTT-GGRYL---LKDHHIEFNPKMLEEY-GLEELIGIIKHELCHY 72 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEeccchhh-hheee---cCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHH
Confidence 568899999999975 455555444455433332 22332 3578999999999998 9999999999999997
No 25
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=96.03 E-value=0.94 Score=42.07 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=55.6
Q ss_pred hHhhhhhcccCccCCc---hhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhH
Q 014430 201 PVLIAPLFNKFTPLPE---GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEE 277 (424)
Q Consensus 201 p~~i~plf~~~~pl~~---~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~E 277 (424)
-.++..-|+|+...++ ..=.+.-+.+.++.|+..-+|..+++. -++|.|. .+|.|-+++...+.- |. -
T Consensus 18 q~~vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~-LtDHYdP------~~k~vrLS~~vy~~~-Si-a 88 (222)
T PF04298_consen 18 QWWVKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPGE-LTDHYDP------RNKVVRLSEDVYNGR-SI-A 88 (222)
T ss_pred HHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCCC-CCCCcCC------CCCEEEeCCccCCCC-CH-H
Confidence 3456666777655432 122345567788999975566666542 2467664 689999999865433 22 3
Q ss_pred HHHHHHHHHhhhhcccH
Q 014430 278 IVAVIAHELGHWKLNHT 294 (424)
Q Consensus 278 i~aVLaHElgH~~~~h~ 294 (424)
-.||=|||.||--.+..
T Consensus 89 AvaVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 89 AVAVAAHEVGHAIQHAE 105 (222)
T ss_pred HHHHHHHHHhHHHhccc
Confidence 36889999999877664
No 26
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=95.50 E-value=0.035 Score=43.14 Aligned_cols=69 Identities=26% Similarity=0.361 Sum_probs=44.1
Q ss_pred cCCchhHHHHHHHHHHHcCCCCCcEEEEeC---C--CCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHh
Q 014430 213 PLPEGELREKIEKLASSLKFPLKKLFVVDG---S--TRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (424)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~---s--~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElg 287 (424)
||+ ..++..+ ....|.+..+|.+-.+ + .++....||+.| ..|++-.+-.+ . +..+=..+||||++
T Consensus 1 PLp-~~~r~~~---e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G----~~I~f~~g~~~-~-~s~~~~~llaHEl~ 70 (79)
T PF13699_consen 1 PLP-ESIRSRL---ERAFGADLSDVRVHTGPAASRAAAALGARAFTVG----NDIYFAPGKYN-P-DSPEGRALLAHELA 70 (79)
T ss_pred CCC-HHHHHHH---HHHhCCCccceEEEeCCchhhhhhccCCeEEEEC----CEEEEcCCCcC-C-CCCCcchhHhHHHH
Confidence 444 3344444 4577888888888766 2 234456676664 77888554332 2 44556789999999
Q ss_pred hhhc
Q 014430 288 HWKL 291 (424)
Q Consensus 288 H~~~ 291 (424)
|...
T Consensus 71 Hv~Q 74 (79)
T PF13699_consen 71 HVVQ 74 (79)
T ss_pred HHHh
Confidence 9864
No 27
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=95.13 E-value=0.16 Score=48.22 Aligned_cols=148 Identities=23% Similarity=0.219 Sum_probs=83.3
Q ss_pred HHHHHHHcCC--CCCcEEEEeCCCCCCcccE-EEEe---cCCCceEeEchhHHhhcC------ChhHHHHHHHHHHhhhh
Q 014430 223 IEKLASSLKF--PLKKLFVVDGSTRSSHSNA-YMYG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELGHWK 290 (424)
Q Consensus 223 i~~l~~~~g~--~~~~i~v~d~s~rs~~~NA-~~~G---~~~~~~Ivl~d~Ll~~l~------~~~Ei~aVLaHElgH~~ 290 (424)
...+.++.|- ..|++....++.++....| -.+| +|..+++++-....+.|+ .+=.-+.|+|||.||..
T Consensus 100 W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHV 179 (295)
T COG2321 100 WMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHV 179 (295)
T ss_pred HHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHH
Confidence 3444455443 3567777777666554222 1234 245788888888887762 22235789999999965
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014430 291 LNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAK 370 (424)
Q Consensus 291 ~~h~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~g~~~~~~~i~l~l~~~i~~~~~~l~~~~~~~~sR~~E~~AD~~A~ 370 (424)
.+-.-..--..... -+. ...-.|..|-+.|.|||.||-
T Consensus 180 QnllGi~~kv~~~~--------------------q~~----------------------s~~~an~~sVr~ELQADCfAG 217 (295)
T COG2321 180 QNLLGILPKVNQNQ--------------------QGM----------------------SQAEANQLSVRRELQADCFAG 217 (295)
T ss_pred HHHhhhhHHHHHHH--------------------hhh----------------------hhhhccCcceeeeehhhHHHH
Confidence 43221111000000 000 011236677789999999984
Q ss_pred Hc-------C--ChHHHHHHHH--------HHHHhhCCCCCCChhhhhhhcCCCChHHHHHHccc
Q 014430 371 KL-------G--YASALRAGLV--------KLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDE 418 (424)
Q Consensus 371 ~l-------g--~~~~l~~aL~--------kL~~~n~~~~~~~~ly~~~~~sHP~l~eRi~~L~~ 418 (424)
-- + ...++.+||. +|.+.......||. .||-+..+|....+.
T Consensus 218 VW~~~~~q~~~Le~gDleeAlnAA~aiGDD~lQ~~~~g~vvPds------ftHGTS~QR~~wF~r 276 (295)
T COG2321 218 VWANYVQQKGLLETGDLEEALNAAHAIGDDRLQQQSQGRVVPDS------FTHGTSQQRVSWFKR 276 (295)
T ss_pred HHHHHhcCCCCCccchHHHHHHHHHHhcccHHHHhccCCcCCcc------cccCCHHHHHHHHHh
Confidence 32 1 1233444543 33444445566775 479999999987653
No 28
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=94.25 E-value=0.086 Score=45.95 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCceEeEchhHHhhcCChhHHHHHHHHHHhhhhc
Q 014430 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 258 ~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~ 291 (424)
+...|.++..+++.. +++++..||.||+.|...
T Consensus 40 ~~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 40 KSAEIRLNPKLLTEN-GRDRLRETLLHELCHAAL 72 (146)
T ss_pred CCCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHH
Confidence 478999999999988 899999999999999865
No 29
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=94.12 E-value=0.15 Score=46.81 Aligned_cols=75 Identities=24% Similarity=0.135 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEeCC--CCCCccc-EEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccH
Q 014430 218 ELREKIEKLASSLKFPLKKLFVVDGS--TRSSHSN-AYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 218 ~L~~~i~~l~~~~g~~~~~i~v~d~s--~rs~~~N-A~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
.+.+.++++.+...-+.-.|++...+ .+....+ -+..|.+...+|.++- +-... +.+++.+++|||+-|..+.+.
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~-~~~~l~~~iaHE~hH~~r~~~ 81 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDY-SLEELPALIAHEYHHNCRYEQ 81 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcc-cHHHHHHHHHHHHHHHHHHhc
Confidence 45566677777776664456555432 2212222 2223334457788875 44456 889999999999999965443
No 30
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=93.80 E-value=0.25 Score=43.29 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=28.7
Q ss_pred ceEeEchhHHhhcCChhHHHHHHHHHHhhhhcc
Q 014430 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (424)
Q Consensus 260 ~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~ 292 (424)
..|.|...+++.. +++|+..+|.||+.|....
T Consensus 43 ~~I~ls~~~~~~~-~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 43 CEIRLSPKLLDRN-PEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred eEEEECHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3899999999987 8999999999999997653
No 31
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=91.56 E-value=0.41 Score=44.21 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=39.6
Q ss_pred CcccEEEEecCCCceEeEchhHHhhcCCh-----hHHHHHHHHHHhhhhcccH
Q 014430 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKND-----EEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~-----~Ei~aVLaHElgH~~~~h~ 294 (424)
...-|+..|-+..+.|-++...+++. +. +|+.+||-||+.|+...+.
T Consensus 61 ~~gVA~t~gd~~~~~I~~S~~~i~~~-~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 61 MDGVAYTSGDDDHKEIHFSARYIAKY-PADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred CCeeEEEecCCCccEEEEeHHHHhhc-ccccchHHHHHHHHHHHHHHHhhcCC
Confidence 56788888866679999999999988 53 5999999999999987664
No 32
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=91.16 E-value=0.41 Score=41.46 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHHHcCCC--CCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhh
Q 014430 216 EGELREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~--~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~ 289 (424)
+.+|++.+++.....+-+ .+++.. +..-+ +..-|| +. +..|=+...+++.. .+|.+..|+.||++|+
T Consensus 4 ~~~L~~~~~~as~~~~r~~~~p~~~~-n~Rg~-taG~ay---L~-~~~I~lNP~ll~en-~~~f~~~vV~HELaHl 72 (156)
T COG3091 4 NRKLQQCVEQASLKFFRKFFRPKASY-NQRGR-TAGGAY---LL-KSEIRLNPKLLEEN-GEDFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceeh-hhhhh-hcchhh---cc-ccccccCHHHHHHc-cHHHHHHHHHHHHHHH
Confidence 356777777776665433 344433 21111 122232 23 34899999999999 9999999999999996
No 33
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=90.87 E-value=0.26 Score=48.03 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=36.3
Q ss_pred CceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHHHHH
Q 014430 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFI 299 (424)
Q Consensus 259 ~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~ 299 (424)
+.+|.+....+..+ +.+|+.+|++||+-|+..+|..+.--
T Consensus 42 g~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~ 81 (292)
T PF13203_consen 42 GRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG 81 (292)
T ss_pred CcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence 35899999999999 99999999999999999999987765
No 34
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=89.86 E-value=0.65 Score=42.86 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=25.3
Q ss_pred CceEeEchhHHhhcCChhHHHHHHHHHHhhhhc-ccH
Q 014430 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL-NHT 294 (424)
Q Consensus 259 ~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~-~h~ 294 (424)
.+.|.|+ + ++.. +.+.++.|++|||||... ||.
T Consensus 117 ~~~I~I~-~-~~~~-~~~~~~hvi~HEiGH~IGfRHT 150 (211)
T PF12388_consen 117 YKFIQIY-G-LSNY-SVNVIEHVITHEIGHCIGFRHT 150 (211)
T ss_pred CceEEEE-e-cCCC-chhHHHHHHHHHhhhhcccccc
Confidence 5788884 3 4677 889999999999999642 444
No 35
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=89.57 E-value=0.9 Score=41.29 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecC--CCceEeEc---hhHHhhcCChhHHHHHHHHHHhhhhccc
Q 014430 219 LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF--KNKRIVLY---DTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (424)
Q Consensus 219 L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~--~~~~Ivl~---d~Ll~~l~~~~Ei~aVLaHElgH~~~~h 293 (424)
+-+.|..++++.++.+..+..+.-.. .+ +.|.. +...|.|- +.. ..+.+-++|..|+.|||+|..++.
T Consensus 25 lA~~v~pIM~~~~~~V~~L~E~~P~~----~~--llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 25 LAADVKPIMRKHGWRVGSLEEFYPNG----ER--LLGLNVNKGEKICLRLRTPDD-GGFLPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred HHHHHHHHHHHcCcccCeeeccCCCC----CC--CcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHHHHHHHHhcccCC
Confidence 33456777888899888776665321 11 45642 33444442 222 322277999999999999999765
Q ss_pred HHH
Q 014430 294 TMY 296 (424)
Q Consensus 294 ~~~ 296 (424)
.-.
T Consensus 98 H~~ 100 (186)
T PF08325_consen 98 HDD 100 (186)
T ss_pred ccH
Confidence 543
No 36
>PRK04860 hypothetical protein; Provisional
Probab=89.31 E-value=1 Score=39.94 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=28.8
Q ss_pred CCceEeEchhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 258 ~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
....|-+...+++.. +++++..|+.||++|+.
T Consensus 44 ~~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 44 QSNEIRLNPVLLLEN-QQAFIDEVVPHELAHLL 75 (160)
T ss_pred hcCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHH
Confidence 467899999999988 99999999999999974
No 37
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=88.17 E-value=2.1 Score=42.28 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHhhhhc
Q 014430 274 NDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 274 ~~~Ei~aVLaHElgH~~~ 291 (424)
++-++-+.+|||+||.+.
T Consensus 192 p~~~~P~T~~HElAHq~G 209 (318)
T PF12725_consen 192 PPYSLPFTICHELAHQLG 209 (318)
T ss_pred CcccccHHHHHHHHHHhC
Confidence 666788999999999754
No 38
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=86.90 E-value=1 Score=41.84 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=22.4
Q ss_pred ceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccH
Q 014430 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 260 ~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
+-|++... . +++.-.+++|||+||+..+-.
T Consensus 59 ~~I~iN~n----~-~~~r~rFtlAHELGH~llH~~ 88 (213)
T COG2856 59 PVIYINAN----N-SLERKRFTLAHELGHALLHTD 88 (213)
T ss_pred ceEEEeCC----C-CHHHHHHHHHHHHhHHHhccc
Confidence 45666554 4 788889999999999865433
No 39
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=86.89 E-value=31 Score=33.33 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=32.6
Q ss_pred HHhhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHH-HHHHHHHHHHHhc
Q 014430 268 LIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVL-TLLQFGGYTLVRN 317 (424)
Q Consensus 268 Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~-~~~~~~l~~~~~~ 317 (424)
+++.. +++|++.+|-+|+.....+|..-.-.+..+. ..-.|.+++.+..
T Consensus 120 vvDG~-~~~~i~~iLe~ei~~~~~r~~~~~~v~~~~g~~APafGmiGTviG 169 (271)
T PRK06926 120 AIDGW-EPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYAPAWGMIGTLVG 169 (271)
T ss_pred HHCCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHchHHHHHHHHHH
Confidence 34456 9999999999999999888876555544332 2234444444443
No 40
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=86.42 E-value=2.2 Score=34.90 Aligned_cols=72 Identities=26% Similarity=0.282 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHcCCC---CCcEEEEeCCCCCCcccEEE--Ee----------cCCCceEeEchhHHhhcCChhHHHHH
Q 014430 217 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYM--YG----------FFKNKRIVLYDTLIQQCKNDEEIVAV 281 (424)
Q Consensus 217 ~~L~~~i~~l~~~~g~~---~~~i~v~d~s~rs~~~NA~~--~G----------~~~~~~Ivl~d~Ll~~l~~~~Ei~aV 281 (424)
++..+.++++..+.|++ ..+++++-+.. +++-|++ .| +.+.-.|-+-..=++.+ +.+|-.-|
T Consensus 7 ~dve~~~~~~V~~lgLdyi~~~rv~vVys~g--S~~~A~ARIwg~pki~~e~lglnP~YviEl~sekF~rL-s~~ekvKv 83 (133)
T COG4900 7 ADVEADIKNAVVRLGLDYIFQVRVVVVYSPG--SHSKAVARIWGIPKIFQEVLGLNPVYVIELLSEKFKRL-SCAEKVKV 83 (133)
T ss_pred ccHHHHHHHHHHHhCcceeeeeeEEEEECCC--CcceehhhhhcccHHHHHHhCCCCeeeeeeehhhcCCC-ChHHHHHH
Confidence 34456677777788876 44677765432 3444432 23 22233444444446678 99999999
Q ss_pred HHHHHhhhhc
Q 014430 282 IAHELGHWKL 291 (424)
Q Consensus 282 LaHElgH~~~ 291 (424)
+.||+.|+-.
T Consensus 84 iiHEllHIP~ 93 (133)
T COG4900 84 IIHELLHIPA 93 (133)
T ss_pred HHHHHhcCcc
Confidence 9999999853
No 41
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=85.13 E-value=1.3 Score=37.38 Aligned_cols=37 Identities=35% Similarity=0.265 Sum_probs=22.8
Q ss_pred ccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 249 SNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 249 ~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
+=|...|.| +.+|.+-..--+.. +.- -|.+||+||+.
T Consensus 53 sya~~~g~G-~G~I~l~~~~~qgy-~~~---RIaaHE~GHiL 89 (132)
T PF02031_consen 53 SYASTDGLG-SGYIFLDYQQNQGY-NST---RIAAHELGHIL 89 (132)
T ss_dssp -EEEE-SSS--EEEEEEHHHHHHS--HH---HHHHHHHHHHH
T ss_pred cccccCCCC-cEEEEechHHhhCC-ccc---eeeeehhcccc
Confidence 345566666 67899876555555 332 28999999963
No 42
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=82.98 E-value=1.4 Score=38.60 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCceEeEchhHHh----hcCChhHHHHHHHHHHhhhh
Q 014430 258 KNKRIVLYDTLIQ----QCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 258 ~~~~Ivl~d~Ll~----~l~~~~Ei~aVLaHElgH~~ 290 (424)
.+..|.+.+.-.. .. +.++..++++||+||.-
T Consensus 71 ~~g~i~~~~~~~~~~~~~~-~~~~~~~~~~HEiGHaL 106 (165)
T cd04268 71 LTGEILLARVYLYSSFVEY-SGARLRNTAEHELGHAL 106 (165)
T ss_pred CCccEEeeEEEEchhHHHH-HHHHHHHHHHHHHHHHh
Confidence 3456665554322 12 34679999999999964
No 43
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=78.90 E-value=33 Score=31.29 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=47.0
Q ss_pred hhhcccCccCCc--hh-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHH
Q 014430 205 APLFNKFTPLPE--GE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAV 281 (424)
Q Consensus 205 ~plf~~~~pl~~--~~-L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aV 281 (424)
..-|+|+..... +- =.+.-+.+.+..|+..-+|-.+++. -++|.. |++|.+-+++.-...- |. .=.||
T Consensus 25 ks~y~KySkV~~s~g~TGaevAr~iLd~nGl~dV~Ve~v~G~-LTDHYD------P~~kvvrLSe~~y~g~-Si-a~~aV 95 (226)
T COG2738 25 KSTYKKYSKVRASSGLTGAEVARMILDENGLYDVPVEEVPGT-LTDHYD------PRRKVVRLSEANYYGP-SI-AAIAV 95 (226)
T ss_pred HHHHHHHhhccCcCCCcHHHHHHHHHhhcCCccceeeeecCC-cccccC------hhhheeeccccccCCc-cH-HHHHH
Confidence 334566655532 11 1234456677888875556555542 234433 3567777777655433 33 33689
Q ss_pred HHHHHhhhhcccH
Q 014430 282 IAHELGHWKLNHT 294 (424)
Q Consensus 282 LaHElgH~~~~h~ 294 (424)
-|||.||--..+.
T Consensus 96 AAHEVGHAiQd~~ 108 (226)
T COG2738 96 AAHEVGHAIQDQE 108 (226)
T ss_pred HHHHhhHHHhhhc
Confidence 9999999766554
No 44
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=78.34 E-value=0.96 Score=39.79 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=28.0
Q ss_pred cEEEEeCCCCC-CcccEEEEecCCC-------ceEeEchhHHh-hcCChhHHHHHHHHHHhhhhc-ccHHHHH
Q 014430 236 KLFVVDGSTRS-SHSNAYMYGFFKN-------KRIVLYDTLIQ-QCKNDEEIVAVIAHELGHWKL-NHTMYSF 298 (424)
Q Consensus 236 ~i~v~d~s~rs-~~~NA~~~G~~~~-------~~Ivl~d~Ll~-~l~~~~Ei~aVLaHElgH~~~-~h~~~~~ 298 (424)
+|++++..... ...++....+|.. ..|++....+. .. +.....-+|+||+|||-. .|++..-
T Consensus 19 NIwv~~~~~~~g~~~~~G~A~~P~~~~~~~~~~~vv~~~~~l~~~~-~~~~~g~TltHEvGH~LGL~HtF~~~ 90 (154)
T PF05572_consen 19 NIWVVNDLYDGGGTSILGYAYFPWSGMSDNGTDGVVINYRYLGGNN-SQYNFGKTLTHEVGHWLGLYHTFGGG 90 (154)
T ss_dssp EEEEES-EE-TTS-EESEEE--TTS-GGG-SEEEEGGGSSSSTT---TTS-SSHHHHHHHHHHTT---TT---
T ss_pred EEEEecccccCCCCCCCeEEeCCCCCCCCCCCCEEEEcCcccCCCC-CccccccchhhhhhhhhcccccccCC
Confidence 78888732111 2223334444433 23444322222 23 455668999999999974 6666543
No 45
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=75.90 E-value=3.9 Score=33.45 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=23.8
Q ss_pred CCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccH
Q 014430 257 FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 257 ~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
+..+.|++.- ... +.+.+..+++||++|....+.
T Consensus 8 ~~~~~i~~~~---~~~-~~~~~~~~l~HE~~H~~~~~~ 41 (128)
T PF13485_consen 8 PGFNRIVVYF---QGS-DEDWLDRVLAHELAHQWFGNY 41 (128)
T ss_pred cCCCEEEEec---CCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4456666543 224 777788999999999865555
No 46
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=74.44 E-value=1.6 Score=37.74 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=20.6
Q ss_pred CceEeEchhHHhh--cCChhHHHHHHHHHHhhhh
Q 014430 259 NKRIVLYDTLIQQ--CKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 259 ~~~Ivl~d~Ll~~--l~~~~Ei~aVLaHElgH~~ 290 (424)
...|.+.+.---. . +..++..|+.||+||.-
T Consensus 85 ~~~i~~~~~~~~~~~~-~~~~~~~v~~HEiGHaL 117 (154)
T PF00413_consen 85 SGDIHFNDDESWTIDD-SGNDLQSVAIHEIGHAL 117 (154)
T ss_dssp TTEEEEETTSHEESSS-SSEEHHHHHHHHHHHHT
T ss_pred cccccccccccchhhh-hhhhhhhhhhhcccccc
Confidence 4456665442211 3 56689999999999973
No 47
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=73.88 E-value=9.4 Score=35.63 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=28.7
Q ss_pred CcccEEEEecCCCceEeEchhHHhhcC----------------ChhHHHHHHHHHHhhh
Q 014430 247 SHSNAYMYGFFKNKRIVLYDTLIQQCK----------------NDEEIVAVIAHELGHW 289 (424)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~d~Ll~~l~----------------~~~Ei~aVLaHElgH~ 289 (424)
+..|||.- |..+.|.+.=.+++... ..+-+..++.||+||.
T Consensus 47 Ge~nA~yd--Pe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHA 103 (220)
T PF14247_consen 47 GEDNAFYD--PENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHA 103 (220)
T ss_pred CCCCCccC--CCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 67899665 56789998877665410 1234678999999993
No 48
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=73.69 E-value=2.1 Score=37.44 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHhhhh
Q 014430 275 DEEIVAVIAHELGHWK 290 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~~ 290 (424)
..++.+|+.||+||.-
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 4689999999999975
No 49
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=73.47 E-value=5.2 Score=41.80 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCCCCcccEEEEecCCCce----------EeEchhHHhh-------cCChhHHHHHHHHHHhhhhccc
Q 014430 243 STRSSHSNAYMYGFFKNKR----------IVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNH 293 (424)
Q Consensus 243 s~rs~~~NA~~~G~~~~~~----------Ivl~d~Ll~~-------l~~~~Ei~aVLaHElgH~~~~h 293 (424)
++..+.+.|+.+|+.+.+. .+|.-+.-.. + +-+|+ ..|+||+||.-|.-
T Consensus 213 ~R~gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll-~~~~V-~TLfHEfGHalH~~ 278 (472)
T cd06455 213 PREGKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLL-RHDEV-ETFFHEFGHVIHHL 278 (472)
T ss_pred CCCCCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCC-CHHHH-HHHHHHHHHHHHHH
Confidence 3345667888888743331 2343332221 2 34665 45899999988744
No 50
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=72.59 E-value=2.1 Score=45.72 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHcCCCCCcEE-------EEeC-CCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhh
Q 014430 217 GELREKIEKLASSLKFPLKKLF-------VVDG-STRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGH 288 (424)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~-------v~d~-s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH 288 (424)
+++.+.+.++.+++|....++. .+|. ++..+.+.||++|++..+.-+|.-+.-. +.+++ .+|+||+||
T Consensus 272 e~~~~~~~~~~~~l~~~~~e~~~~~~~~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~Nf~~---t~~dv-~TL~HElGH 347 (549)
T TIGR02289 272 DFLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFNG---TSGDI-DVLTHEAGH 347 (549)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhcCccccCCCCCCCCCcccCCCCCCCCcEEEEeCCC---ChhHH-HHHHHHhhH
Confidence 4555666666665554322221 2332 4445678899999864333333323221 44454 469999999
Q ss_pred hhcccHH
Q 014430 289 WKLNHTM 295 (424)
Q Consensus 289 ~~~~h~~ 295 (424)
.-|....
T Consensus 348 a~H~~~s 354 (549)
T TIGR02289 348 AFHVYES 354 (549)
T ss_pred HHHHHHh
Confidence 9876543
No 51
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=71.99 E-value=2.1 Score=46.11 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=30.7
Q ss_pred CCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccH
Q 014430 246 SSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 246 s~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
.+.+-||..|..+.....|.-+....+ +. ..+|+||+||..|...
T Consensus 352 gKrsGaYs~~~~~~~~p~IlmN~~gt~---~d-V~TLaHElGHs~Hs~~ 396 (598)
T COG1164 352 GKRSGAYSIGFYKGDHPFILMNYDGTL---RD-VFTLAHELGHSVHSYF 396 (598)
T ss_pred CCCCCcccCCCCCCCCCeEEEeCCCch---hH-HHHHHHHccHHHHHHH
Confidence 467889999986545555555544333 22 5689999999888644
No 52
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.50 E-value=4.6 Score=39.29 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=32.9
Q ss_pred CceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHH
Q 014430 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (424)
Q Consensus 259 ~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~ 296 (424)
.-++......+-++ +.+|+.|.|-||+-|+..+|+.+
T Consensus 51 ~~~~y~NPei~~~~-p~~~~~aLl~HEV~Hi~l~Hi~r 87 (396)
T COG3864 51 YFTMYFNPEIFLNC-PISEMKALLKHEVYHIMLNHIKR 87 (396)
T ss_pred ceEEEeCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888889999 99999999999999999999853
No 53
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=69.96 E-value=5.6 Score=41.26 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=32.3
Q ss_pred CcEEEEeCCCCCCcccEEEEecCCC--------ceEeEchhHHh-------hcCChhHHHHHHHHHHhhhhc
Q 014430 235 KKLFVVDGSTRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 235 ~~i~v~d~s~rs~~~NA~~~G~~~~--------~~Ivl~d~Ll~-------~l~~~~Ei~aVLaHElgH~~~ 291 (424)
..+|+=--++..+...|+.+++.++ +..+|.-+.-. .+ +.+++ ..|+||+||.-|
T Consensus 186 g~~ylDl~~R~gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v-~tLfHE~GHa~H 255 (458)
T PF01432_consen 186 GYIYLDLYPRPGKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLL-SHDDV-ETLFHEFGHAMH 255 (458)
T ss_dssp EEEEEEES--TTS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B--SHHHH-HHHHHHHHHHHH
T ss_pred hcccccchhcCCCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCcc-ChhhH-HHHHHHHhHHHH
Confidence 4455544455567788999988654 55566555443 13 55776 679999999765
No 54
>PF14891 Peptidase_M91: Effector protein
Probab=69.61 E-value=15 Score=32.90 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHhhhhc
Q 014430 275 DEEIVAVIAHELGHWKL 291 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~~~ 291 (424)
+.+=..+|+|||+|..+
T Consensus 100 ~~~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 100 PRPPFVVLYHELIHAYD 116 (174)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34457899999999754
No 55
>PRK09109 motC flagellar motor protein; Reviewed
Probab=69.12 E-value=1.1e+02 Score=29.13 Aligned_cols=48 Identities=13% Similarity=-0.001 Sum_probs=32.2
Q ss_pred hhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHH-HHHHHHHHHHHhcC
Q 014430 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVL-TLLQFGGYTLVRNS 318 (424)
Q Consensus 270 ~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~-~~~~~~l~~~~~~~ 318 (424)
+.. ++|+++.++-.|+.....+|-...-.+..+. ..-.+.+++.+..-
T Consensus 117 ~g~-~~~~i~~~le~~i~~~~~r~~~~~~~l~~~a~~AP~lGllGTVlGl 165 (246)
T PRK09109 117 DGA-EPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMGL 165 (246)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHHHHHHHHHHH
Confidence 355 8999999999999988888765555444432 33345556655543
No 56
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=69.02 E-value=3.6 Score=42.00 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=27.8
Q ss_pred CCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccH
Q 014430 244 TRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 244 ~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
+..+.+.||.+|++..+...|.-+.-. +.++ ...++||+||..|...
T Consensus 192 r~gK~~gaf~~~~~~~~~p~i~~n~~~---~~~~-v~tl~HE~GHa~h~~~ 238 (427)
T cd06459 192 RKGKRSGAYCTGLPPGKHPFILMNFNG---TLDD-VFTLAHELGHAFHSYL 238 (427)
T ss_pred CCCCCCCeecCCCCCCCCCeEEecCCC---Chhh-HHHHHHHhhHHHHHHH
Confidence 344566799998863333333333322 3444 4569999999766443
No 57
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=68.87 E-value=1.5 Score=45.92 Aligned_cols=42 Identities=36% Similarity=0.407 Sum_probs=30.5
Q ss_pred CcccEEEEecCCCceEeEchhHHhhc--C-------ChhHHHHHHHHHHhhhh
Q 014430 247 SHSNAYMYGFFKNKRIVLYDTLIQQC--K-------NDEEIVAVIAHELGHWK 290 (424)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~d~Ll~~l--~-------~~~Ei~aVLaHElgH~~ 290 (424)
...|||.- |.+..||.+..+|+.- + +-.-|-||||||+||--
T Consensus 449 q~VNAYYn--p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgF 499 (654)
T COG3590 449 QTVNAYYN--PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGF 499 (654)
T ss_pred HHhhhhcC--CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccc
Confidence 45788664 4578899999888651 0 23358899999999964
No 58
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=68.53 E-value=3.2 Score=39.37 Aligned_cols=17 Identities=47% Similarity=0.374 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhhhc
Q 014430 275 DEEIVAVIAHELGHWKL 291 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~~~ 291 (424)
+.+...++|||+||--.
T Consensus 164 ~~~~a~t~AHElGHnlG 180 (244)
T cd04270 164 TKESDLVTAHELGHNFG 180 (244)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 45578999999999754
No 59
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=66.85 E-value=4.6 Score=43.41 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCCCCcccEEEEecCC-CceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHH
Q 014430 243 STRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (424)
Q Consensus 243 s~rs~~~NA~~~G~~~-~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~ 295 (424)
+++.+.+.||.+|.++ ...|++. .-. +.++ ...||||+||.-|....
T Consensus 348 ~r~gK~~Ga~~~~~~~~~p~il~N--~~~---~~~d-v~TLaHElGHa~H~~~~ 395 (591)
T TIGR00181 348 ENKGKRSGAYSIGGYKVKPYILMN--WDG---TLNS-VFTLAHELGHSMHSYFS 395 (591)
T ss_pred CCCCCCCCcccCCCCCCCCeEEEe--cCC---Ccch-HHHHHHHhhhHHHHHHH
Confidence 3445667899999864 4444442 111 3344 46799999998766543
No 60
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=66.73 E-value=9.3 Score=38.28 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=30.3
Q ss_pred CCcccEEEEecCC-----CceEeEchhHHhh-------cCChhHHHHHHHHHHhhhhcccH
Q 014430 246 SSHSNAYMYGFFK-----NKRIVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 246 s~~~NA~~~G~~~-----~~~Ivl~d~Ll~~-------l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
.+...|+.+++.+ .+.+.|.-+.-.. + +.+++. .+.||+||..|.-.
T Consensus 112 gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v~-tl~HE~GHa~h~~l 170 (365)
T cd06258 112 GKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLL-GHDDIN-TLFHEFGHAVHFLL 170 (365)
T ss_pred CCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcC-CHHHHH-HHHHHHhHHHHHHH
Confidence 3567788888752 4566665554432 3 556654 48999999887543
No 61
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=65.73 E-value=3 Score=37.74 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHhhhh
Q 014430 274 NDEEIVAVIAHELGHWK 290 (424)
Q Consensus 274 ~~~Ei~aVLaHElgH~~ 290 (424)
+..+-.-++|||+||.-
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 45777889999999964
No 62
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=64.63 E-value=5.4 Score=37.06 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=23.5
Q ss_pred cccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 248 HSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 248 ~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
..-|++-|.+...++.+... .- ..-+-..++|||+||.-
T Consensus 119 ~G~A~~g~~C~~~~~~~~~d---~~-~~~~~~~~~AHElGH~l 157 (220)
T cd04272 119 GGYAYVGGACTENRVAMGED---TP-GSYYGVYTMTHELAHLL 157 (220)
T ss_pred cceEeecCccCCCceeEeec---CC-CCcccHHHHHHHHHHHh
Confidence 35677778764444443311 11 11245899999999965
No 63
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=64.46 E-value=23 Score=36.36 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHhhhHHHHhccCcchhHHHHHHHHHHHHHHHhhccccH
Q 014430 65 VHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126 (424)
Q Consensus 65 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~lP~ 126 (424)
+.....++..+++++-|+.||+.||+- +|-.+++++.+++-+|.
T Consensus 543 w~a~~~Lia~~L~L~iGliPWiDN~aH------------------lfG~i~GLl~s~~~~PY 586 (652)
T KOG2290|consen 543 WRAFFHLIATLLVLCIGLIPWIDNWAH------------------LFGTIFGLLTSIIFLPY 586 (652)
T ss_pred HHHHHHHHHHHHHHHhccccchhhHHH------------------HHHHHHHHHHHHHhhcc
Confidence 345566777777788899999987652 34556667777777783
No 64
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=64.19 E-value=5.7 Score=36.33 Aligned_cols=43 Identities=28% Similarity=0.219 Sum_probs=27.0
Q ss_pred cEEEEecCCCceEeEchhHHhhc--C-------ChhHHHHHHHHHHhhhhcccH
Q 014430 250 NAYMYGFFKNKRIVLYDTLIQQC--K-------NDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 250 NA~~~G~~~~~~Ivl~d~Ll~~l--~-------~~~Ei~aVLaHElgH~~~~h~ 294 (424)
|||-. +...+|+++.+++..- + +-.-+-+|||||++|.-..+-
T Consensus 1 na~Y~--~~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g 52 (206)
T PF01431_consen 1 NAYYS--PRFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEG 52 (206)
T ss_dssp --EEE--TTTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTG
T ss_pred CCCCC--cccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45433 3467888888776541 0 234578999999999765543
No 65
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=64.05 E-value=3.5 Score=34.22 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhh
Q 014430 279 VAVIAHELGHWK 290 (424)
Q Consensus 279 ~aVLaHElgH~~ 290 (424)
..+++||+||.-
T Consensus 108 ~~~~~HEiGH~l 119 (124)
T PF13582_consen 108 VDTFAHEIGHNL 119 (124)
T ss_dssp TTHHHHHHHHHT
T ss_pred ceEeeehhhHhc
Confidence 489999999964
No 66
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=63.94 E-value=17 Score=32.60 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=27.2
Q ss_pred EecCC-CceEeEchhHHhhcCChhHHHHHHHHHHhhhhc
Q 014430 254 YGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 254 ~G~~~-~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~ 291 (424)
-|+.+ .+.|+|-.+-+. +.++++-+|+|||-|..-
T Consensus 49 Ggf~p~~~~I~lC~N~~~---~~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 49 GGFDPSKKGIVLCQNRIR---SQGHLEDTLTHELIHAYD 84 (173)
T ss_pred CCccCCCCCEEEeeCCCC---CHHHHHHHHHHHHHHHHH
Confidence 34544 788998877553 889999999999999743
No 67
>PRK08456 flagellar motor protein MotA; Validated
Probab=62.88 E-value=1.4e+02 Score=28.42 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhH---HhhcCChhHHHHHHHHHHhhhh
Q 014430 214 LPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTL---IQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 214 l~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~L---l~~l~~~~Ei~aVLaHElgH~~ 290 (424)
.+.+++.+.+.+++++.... +..-.++..++.. +. ++-+++ .+.. +++|++.++-.|+....
T Consensus 72 ~~~~~li~~l~~l~~~~r~~--g~laLe~~~~~~~-~~-----------fl~~gL~~~~~g~-~~~~i~~~le~ei~~~~ 136 (257)
T PRK08456 72 VNLNERIKQLVELATLARKD--GVLALEGRVAQIE-DE-----------FLKNGLSMLVDGK-DLEEIKESMEIQIEEME 136 (257)
T ss_pred CCHHHHHHHHHHHHHHhhhh--hHHHHhhcccCcH-HH-----------HHHHHHHHhhcCC-CHHHHHHHHHHHHHHHH
Confidence 34567778888888776543 2222222111111 11 111222 2345 88999999999999777
Q ss_pred cccHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014430 291 LNHTMYSFIAVQ-VLTLLQFGGYTLVRN 317 (424)
Q Consensus 291 ~~h~~~~~~~~~-~~~~~~~~l~~~~~~ 317 (424)
++|..-.-.... ....-.+.+++.+..
T Consensus 137 ~~~~~~~~~~~~~a~~AP~lGllGTVlG 164 (257)
T PRK08456 137 EYYHGAAHYWITAGETCPTMGLVGAVMG 164 (257)
T ss_pred HHHHhHhHHHHHHHHHhhHHHHHHHHHH
Confidence 776632222222 222334455555444
No 68
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=62.34 E-value=5.3 Score=34.91 Aligned_cols=27 Identities=41% Similarity=0.363 Sum_probs=18.2
Q ss_pred ceEeEchhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 260 ~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
..+++.+.- . ...+...+++||+||.-
T Consensus 82 ~~~~~~~~~---~-~~~~~~~~~~HElGH~L 108 (167)
T cd00203 82 GVGVLQDNQ---S-GTKEGAQTIAHELGHAL 108 (167)
T ss_pred CcEEEecCC---c-ccccchhhHHHHHHHHh
Confidence 455554431 2 34578999999999974
No 69
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=61.60 E-value=6.5 Score=32.76 Aligned_cols=31 Identities=32% Similarity=0.645 Sum_probs=22.2
Q ss_pred CceEeEchh-HHhhcCCh------hHHHHHHHHHHhhhh
Q 014430 259 NKRIVLYDT-LIQQCKND------EEIVAVIAHELGHWK 290 (424)
Q Consensus 259 ~~~Ivl~d~-Ll~~l~~~------~Ei~aVLaHElgH~~ 290 (424)
..||-++.. +++.. .+ |++.-|+-||+||.-
T Consensus 84 P~rItlYRrailDyw-ae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 84 PDRITLYRRALLDYW-AENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred CceeeeeHHHHHHHH-hhhhhhHhhHhhhhhhhhhhhhc
Confidence 378888887 45555 33 457788999999963
No 70
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=61.14 E-value=4.2 Score=36.37 Aligned_cols=13 Identities=46% Similarity=0.595 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhc
Q 014430 279 VAVIAHELGHWKL 291 (424)
Q Consensus 279 ~aVLaHElgH~~~ 291 (424)
.-++|||+||.-.
T Consensus 112 ~~~~aHElGH~lG 124 (173)
T PF13574_consen 112 IDTFAHELGHQLG 124 (173)
T ss_dssp HHHHHHHHHHHHT
T ss_pred eeeehhhhHhhcC
Confidence 4459999999654
No 71
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=60.73 E-value=18 Score=32.50 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=19.8
Q ss_pred ceEeEchhHHhhc-CChhHHHHHHHHHHhhhhc
Q 014430 260 KRIVLYDTLIQQC-KNDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 260 ~~Ivl~d~Ll~~l-~~~~Ei~aVLaHElgH~~~ 291 (424)
..|.+........ ........++.||+||.-.
T Consensus 94 g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaLG 126 (186)
T cd04277 94 GDIWFNSSYDTNSDSPGSYGYQTIIHEIGHALG 126 (186)
T ss_pred ceeEEecCcccccCCCChhhHHHHHHHHHHHhc
Confidence 4566655433211 0245679999999999743
No 72
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=60.59 E-value=1.5e+02 Score=32.92 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHHHHhhccccHHhhccchhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014430 113 AGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175 (424)
Q Consensus 113 ~~~~~~~~~~~lP~~~y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~ 175 (424)
+...++..++++|.++|++-..-+- .++..--.-+.+.+-+.+++.++=.+...+.+.++.
T Consensus 229 l~~~~~~hll~Lpl~~f~~r~~Ge~--~sR~~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~ 289 (709)
T COG2274 229 LSGRFFRHLLRLPLSYFEKRSVGEI--ISRVRELEQIREFLTGSILTLIIDLLFALIFLAVMF 289 (709)
T ss_pred HHHHHHHHHHcCcHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577788999999875432110 011111223555555555555555555544444443
No 73
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=60.41 E-value=24 Score=27.16 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=32.9
Q ss_pred CchhHHHHH----HHHHHHcCCCCC---cEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHH
Q 014430 215 PEGELREKI----EKLASSLKFPLK---KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIA 283 (424)
Q Consensus 215 ~~~~L~~~i----~~l~~~~g~~~~---~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLa 283 (424)
.|++.++++ .+.+++.|+..| +|.+++.+. . ..++||+..=-..+ |++|+.+|-+
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~----~---------~~~lVlP~~P~~~l-se~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESP----T---------VLYLVLPVNPDIEL-TDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCC----C---------eEEEEecCCCCCCC-CHHHHHHhhC
Confidence 366666665 556667798755 677888631 1 23333322211168 9999999853
No 74
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=60.38 E-value=4.6 Score=35.32 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=20.4
Q ss_pred CCceEeEchhHHhhc---CChhHHHHHHHHHHhhhh
Q 014430 258 KNKRIVLYDTLIQQC---KNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 258 ~~~~Ivl~d~Ll~~l---~~~~Ei~aVLaHElgH~~ 290 (424)
....|.+.+.-.-.. .+...+..|+.||+||.-
T Consensus 84 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 84 IGGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHAL 119 (157)
T ss_pred cceeEEECCCcccccCCCCccchHHHHHHHHhcccc
Confidence 345666655322111 034569999999999963
No 75
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=59.75 E-value=16 Score=38.41 Aligned_cols=60 Identities=30% Similarity=0.262 Sum_probs=38.5
Q ss_pred HHHHHcCCCC----CcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccH
Q 014430 225 KLASSLKFPL----KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 225 ~l~~~~g~~~----~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
+.++++..|. -++.+++.|... .|+-.-.-.+++.+++. .++-+.-|+|||++|--.|..
T Consensus 241 ~~Ae~l~GpY~WgryDllvlPpSFP~-------gGMENPcltF~TpTlla---GDrsl~~vIaHEIAHSWtGNl 304 (613)
T KOG1047|consen 241 KAAEKLFGPYVWGRYDLLVLPPSFPF-------GGMENPCLTFVTPTLLA---GDRSLVDVIAHEIAHSWTGNL 304 (613)
T ss_pred HHHHHHcCCcccccceEEEecCCCCc-------ccccCcceeeecchhhc---CCcchhhHHHHHhhhhhcccc
Confidence 3445554442 377888876321 23432344567888875 667789999999999776544
No 76
>PRK12482 flagellar motor protein MotA; Provisional
Probab=59.66 E-value=1.8e+02 Score=28.39 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=29.4
Q ss_pred cCChhHHHHHHHHHHhhhhcccHHHHHHHHHHH-HHHHHHHHHHHh
Q 014430 272 CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVL-TLLQFGGYTLVR 316 (424)
Q Consensus 272 l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~-~~~~~~l~~~~~ 316 (424)
. ++++++.+|-.|+....++|..-.-.+..+. ..-.+...+.++
T Consensus 138 ~-d~~~i~~iLe~eie~~~~r~~~~a~v~~~~a~~aPa~GiiGtvl 182 (287)
T PRK12482 138 I-NQHELEGILDQELDAVEEELLQPSRSLQRIAEAMPGFGICAAVL 182 (287)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHchHHHHHHHHH
Confidence 5 9999999999999988888876555444332 222344444444
No 77
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=58.90 E-value=6.2 Score=35.71 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=24.8
Q ss_pred CcccEEEEecCC-CceEeEchhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 247 SHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 247 ~~~NA~~~G~~~-~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
...-|++.|++. .....+.... .- +..+...++|||+||--
T Consensus 102 ~~G~A~~g~iC~~~~~~~v~~~~--~~-~~~~~a~~~AHElGH~l 143 (194)
T cd04269 102 TVGLAYVGGMCSPKYSGGVVQDH--SR-NLLLFAVTMAHELGHNL 143 (194)
T ss_pred ceeeeecCCccCCCcceEEEEeC--Cc-chHHHHHHHHHHHHhhc
Confidence 345677777754 3343333211 11 24677899999999975
No 78
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=58.58 E-value=5.8 Score=42.68 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=26.9
Q ss_pred CCCcccEEEEecCCC--ceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccH
Q 014430 245 RSSHSNAYMYGFFKN--KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 245 rs~~~NA~~~G~~~~--~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
+.+.+.||.+|+++. .+|++ +.-. +.+++ ..|+||+||..|...
T Consensus 346 ~gK~~Ga~~~~~~~~~~p~i~~--N~~~---~~~~v-~TL~HE~GHa~H~~l 391 (587)
T TIGR02290 346 PGKRGGAFCTGFPPSKEPRVLM--NYDG---SRRDV-STLAHELGHAYHSEL 391 (587)
T ss_pred CCCCCCcccCCCCCCCCCEEEE--ecCC---CchhH-HHHHHHhhHHHHHHH
Confidence 346678999987532 44333 2211 33443 569999999988543
No 79
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=57.54 E-value=9.4 Score=36.35 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=25.8
Q ss_pred hhHHhhc--CChhHHHHHHHHHHhhhh---cccHHHHHHH
Q 014430 266 DTLIQQC--KNDEEIVAVIAHELGHWK---LNHTMYSFIA 300 (424)
Q Consensus 266 d~Ll~~l--~~~~Ei~aVLaHElgH~~---~~h~~~~~~~ 300 (424)
|.++..+ .+++++...+-||++|-| ++|+..+-.+
T Consensus 183 DPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNEsF 222 (376)
T COG4324 183 DPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNESF 222 (376)
T ss_pred cHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhHHH
Confidence 5566543 288999999999999965 6777666543
No 80
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=57.32 E-value=1.8e+02 Score=27.76 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=50.1
Q ss_pred cCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcc
Q 014430 213 PLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (424)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~ 292 (424)
+.+..++-+.+.+++++..- +++.-.+.. ...|.|+- +- -+-+.+.. +++|++.++-.|+.....+
T Consensus 70 ~~~~~~~i~~l~~la~~aR~--~GllaLE~~---~i~d~f~~-----~~---l~l~vdg~-~~~~i~~~l~~~~~~~~~~ 135 (254)
T PRK08990 70 IDKPEDLIEQIVEMADAARK--GGFLALEEA---EISNSFMQ-----KG---VDLLVDGH-DGDVVRAALEKDIALTEER 135 (254)
T ss_pred CCCHHHHHHHHHHHHHHHhh--ccHhhhhcc---ccchHHHH-----HH---HHHHhcCC-CHHHHHHHHHHHHHHHHHH
Confidence 34455777777777766532 233333321 12233221 10 01223345 8999999999999988888
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHhc
Q 014430 293 HTMYSFIAVQVL-TLLQFGGYTLVRN 317 (424)
Q Consensus 293 h~~~~~~~~~~~-~~~~~~l~~~~~~ 317 (424)
|-...-.+..+. ..-.+.+++.+..
T Consensus 136 ~~~~~~~l~~~a~~aP~lGllGTVlG 161 (254)
T PRK08990 136 HETGIGIFRAFGDVAPAMGMIGTLIG 161 (254)
T ss_pred HHhHhHHHHHHHHHhHHHHHHHHHHH
Confidence 776665555433 2334555565554
No 81
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=56.91 E-value=8.9 Score=33.55 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=21.5
Q ss_pred CcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
.-.|||--| .+++..|+--..+.+--.=.=|+|||++|-.
T Consensus 108 ~~~NAfW~g----~~m~yGdG~~~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 108 NYNNAFWNG----SQMVYGDGDGQIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp STT-EEE-S----SSEEEE---SSSBS-GGG-HHHHHHHHHHHH
T ss_pred CccCccccC----CEEEEECCCCcccccCccccceeeecccccc
Confidence 468997654 5788888744333111222459999999954
No 82
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=56.27 E-value=21 Score=40.33 Aligned_cols=20 Identities=40% Similarity=0.295 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHhhhhcccH
Q 014430 275 DEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~~~~h~ 294 (424)
.+.+..|+|||++|--.|+.
T Consensus 280 ~~~i~~VIaHElaHqWfGNl 299 (863)
T TIGR02414 280 YERIESVIAHEYFHNWTGNR 299 (863)
T ss_pred HHHHHHHHHHHHHHHHhcce
Confidence 34588999999999776643
No 83
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=56.14 E-value=5.2 Score=36.12 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHhhhh
Q 014430 275 DEEIVAVIAHELGHWK 290 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~~ 290 (424)
..+...++|||+||.-
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 4567889999999986
No 84
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=53.73 E-value=43 Score=30.23 Aligned_cols=16 Identities=44% Similarity=0.709 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhh-ccc
Q 014430 278 IVAVIAHELGHWK-LNH 293 (424)
Q Consensus 278 i~aVLaHElgH~~-~~h 293 (424)
+.-..+||+||.- ..|
T Consensus 125 ~~k~~~HElGH~lGL~H 141 (179)
T PRK13267 125 VRKEVTHELGHTLGLEH 141 (179)
T ss_pred HHHHHHHHHHHHcCCcc
Confidence 4455899999973 344
No 85
>PRK14015 pepN aminopeptidase N; Provisional
Probab=52.20 E-value=25 Score=39.76 Aligned_cols=19 Identities=42% Similarity=0.359 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhhhhcccH
Q 014430 276 EEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 276 ~Ei~aVLaHElgH~~~~h~ 294 (424)
..+..|+|||++|--.|+.
T Consensus 294 ~~i~~vIaHElaHqWFGNl 312 (875)
T PRK14015 294 ERIESVIAHEYFHNWTGNR 312 (875)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 3488999999999776654
No 86
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=52.07 E-value=9.9 Score=34.54 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=21.1
Q ss_pred ccEEEEecCCC-c-eEeEchhHHhhcCChhHHHHHHHHHHhhh
Q 014430 249 SNAYMYGFFKN-K-RIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (424)
Q Consensus 249 ~NA~~~G~~~~-~-~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~ 289 (424)
.-|+..|++.. + .-+..+.- - +......++|||+||.
T Consensus 104 G~a~~~~~C~~~~s~~i~~~~~---~-~~~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 104 GLAYVGGMCSPSRSCGIVEDHS---R-SGLSFAVIIAHELGHN 142 (199)
T ss_dssp EEE-TT-TTSTTTSEEEEE-SS---S-SHHHHHHHHHHHHHHH
T ss_pred eeEeCCCCCCcCCCCcEeeecc---c-hhHHHHHHHHHHHHHh
Confidence 44666666533 2 23333321 2 5678899999999995
No 87
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=52.07 E-value=9.7 Score=38.26 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHH-hh--cC---ChhHHHHHHHHHHhhhh
Q 014430 219 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI-QQ--CK---NDEEIVAVIAHELGHWK 290 (424)
Q Consensus 219 L~~~i~~l~~~~g~~--~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll-~~--l~---~~~Ei~aVLaHElgH~~ 290 (424)
..+.++-+.+..|.| .+++-++-.+. -..+ |+..-+-|.+.+..+ .. .. ...++..++|||++|--
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~--~~~~----~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqW 307 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPD--FPFG----GMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQW 307 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST---SSS----EE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhhccccceecceeEEEEec--cccc----cccccccccccccccccCcccccchhhhhhHHHHHHHHHHHH
Confidence 344556666777854 44444433211 0111 222224455555432 11 00 24578999999999986
Q ss_pred cccH
Q 014430 291 LNHT 294 (424)
Q Consensus 291 ~~h~ 294 (424)
-++.
T Consensus 308 fGn~ 311 (390)
T PF01433_consen 308 FGNL 311 (390)
T ss_dssp BTTT
T ss_pred hccC
Confidence 6653
No 88
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=51.59 E-value=23 Score=36.15 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=41.7
Q ss_pred cCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChh-HHH--HHHHHHHhhh
Q 014430 213 PLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDE-EIV--AVIAHELGHW 289 (424)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~-Ei~--aVLaHElgH~ 289 (424)
+.+...-++.-+++++.+|+...+- .+|.| .+.|.+|+++ ..+-|+.. . +++ =+. .-++||+||-
T Consensus 103 ~~~~~~Q~~~~~~~~~~~g~df~~g-riD~s-----~hpF~~~~~~-~dvRItt~----y-~~~d~~~~l~t~iHE~GHa 170 (396)
T cd06460 103 PFPEEKQEALGRELLEALGFDFDRG-RLDVS-----AHPFTGGLGP-GDVRITTR----Y-DENDFRSALFSTIHETGHA 170 (396)
T ss_pred CCCHHHHHHHHHHHHHHhCCcccCC-eeecC-----CCCCCCCCCC-CCceEEee----e-CCcchHHHHHHHHHHhhHH
Confidence 4444444556678899999986543 35553 3458888742 24444433 3 222 233 4579999998
Q ss_pred hccc
Q 014430 290 KLNH 293 (424)
Q Consensus 290 ~~~h 293 (424)
.+..
T Consensus 171 lye~ 174 (396)
T cd06460 171 LYEQ 174 (396)
T ss_pred HHHh
Confidence 8877
No 89
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=50.57 E-value=7.5 Score=35.85 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhhhhc
Q 014430 276 EEIVAVIAHELGHWKL 291 (424)
Q Consensus 276 ~Ei~aVLaHElgH~~~ 291 (424)
.+. -+++||+||.-.
T Consensus 136 ~~~-~~~aHEiGH~lG 150 (206)
T PF13583_consen 136 NGY-QTFAHEIGHNLG 150 (206)
T ss_pred ccc-hHHHHHHHHHhc
Confidence 344 449999999754
No 90
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=50.49 E-value=5.7 Score=37.27 Aligned_cols=11 Identities=55% Similarity=0.752 Sum_probs=9.7
Q ss_pred HHHHHHHhhhh
Q 014430 280 AVIAHELGHWK 290 (424)
Q Consensus 280 aVLaHElgH~~ 290 (424)
.++|||+||--
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 58999999975
No 91
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=49.43 E-value=33 Score=33.37 Aligned_cols=43 Identities=21% Similarity=0.432 Sum_probs=35.3
Q ss_pred hcccCccCCch-hHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEe
Q 014430 207 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 255 (424)
Q Consensus 207 lf~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G 255 (424)
.+.+|.|++++ ++++.+.+++++.|++ .+|++.+. ..|+.+.|
T Consensus 9 a~Y~f~~i~dp~~~~~~l~~~~~~~~vk-GrillA~E-----GINgtvsG 52 (308)
T COG1054 9 AYYKFVPIEDPEALRDPLLALCKALGVK-GRILLAHE-----GINGTVSG 52 (308)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCce-eEEEEccC-----CcceeEec
Confidence 45689999875 5889999999999996 67888763 68988776
No 92
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=46.71 E-value=1.4e+02 Score=30.10 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. ++|..++.+.|-
T Consensus 239 dP~iK~r~Rq~~re~~~~~m~~~V~~AdVVItNP 272 (358)
T PRK13109 239 DPSVKARLRSLAQDRARNRMLANVPRATLVIANP 272 (358)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECC
Confidence 688888888777654 566667777764
No 93
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=46.34 E-value=25 Score=28.37 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=22.6
Q ss_pred CceEeEchhHHh-hcCCh----hHHHHHHHHHHhhhhccc
Q 014430 259 NKRIVLYDTLIQ-QCKND----EEIVAVIAHELGHWKLNH 293 (424)
Q Consensus 259 ~~~Ivl~d~Ll~-~l~~~----~Ei~aVLaHElgH~~~~h 293 (424)
..||+|+..=+. ...+. +++.-++-||+||+-.-+
T Consensus 49 p~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~ 88 (97)
T PF06262_consen 49 PDRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGIS 88 (97)
T ss_dssp -EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 479999987444 33344 446778899999986543
No 94
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=46.12 E-value=1.5e+02 Score=29.66 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. +.|..++.+.|-
T Consensus 230 dP~iK~rrR~~~re~a~~~m~~~V~~AdVVItNP 263 (347)
T TIGR00328 230 DPEVKGRIRQMQREAARRRMMQEVPKADVVITNP 263 (347)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECC
Confidence 688888877666543 566667777764
No 95
>PRK08124 flagellar motor protein MotA; Validated
Probab=45.29 E-value=2.8e+02 Score=26.51 Aligned_cols=48 Identities=19% Similarity=0.043 Sum_probs=31.7
Q ss_pred hhcCChhHHHHHHHHHHhhhhcccHHHHHHHHHHH-HHHHHHHHHHHhcC
Q 014430 270 QQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVL-TLLQFGGYTLVRNS 318 (424)
Q Consensus 270 ~~l~~~~Ei~aVLaHElgH~~~~h~~~~~~~~~~~-~~~~~~l~~~~~~~ 318 (424)
+.. +++|++.++-.|+.....+|-...-.+..+. ..-.+.+++.+..-
T Consensus 118 ~g~-~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~AP~lGllGTVlGl 166 (263)
T PRK08124 118 DGQ-SPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIGL 166 (263)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 345 8999999999999988887766555554432 23345556655543
No 96
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=44.78 E-value=17 Score=26.26 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=20.3
Q ss_pred ChhhcccCCHHHHHHHHHHhhhhh
Q 014430 37 PKTLEGVISQEKFEKSRGYSLDKS 60 (424)
Q Consensus 37 p~~~~~~~~~e~~~k~~~Y~~~~~ 60 (424)
|.-+...+++|+|++.|+++++..
T Consensus 24 pi~~~Pmm~~eeYk~~Q~~nR~gI 47 (58)
T PF15061_consen 24 PIYFRPMMNPEEYKKEQKINRAGI 47 (58)
T ss_pred hhhcccccChHHHHHHHHHHHhcc
Confidence 566677899999999999999754
No 97
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=44.66 E-value=51 Score=29.17 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=30.3
Q ss_pred ecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHHH
Q 014430 255 GFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (424)
Q Consensus 255 G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~~ 296 (424)
|+-+.+.|++-.+-+. +.+++.-|++||+-|.--.+-++
T Consensus 71 Gy~~~~gIvlCqN~l~---~q~h~n~vv~HElIH~fDd~r~~ 109 (194)
T KOG3314|consen 71 GYTPGRGIVLCQNRLT---IQDHVNQVVIHELIHAFDDCRAK 109 (194)
T ss_pred CccCCCceEEeccccc---hHHHHHHHHHHHHHHHHHhhhhh
Confidence 4545666999988553 78999999999999987766554
No 98
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=44.31 E-value=35 Score=38.42 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhhhcccH
Q 014430 276 EEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 276 ~Ei~aVLaHElgH~~~~h~ 294 (424)
+.+..|+|||++|---++.
T Consensus 285 ~~~~~viaHElAHqWFGnl 303 (831)
T TIGR02412 285 ENRAGVILHEMAHMWFGDL 303 (831)
T ss_pred HHHHHHHHHHHHHHHhCCE
Confidence 4577899999999777643
No 99
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=43.55 E-value=41 Score=24.35 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhcc
Q 014430 185 LWAFMFVLSLVMMTLYPVLIAPLFN 209 (424)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~i~plf~ 209 (424)
+.++..++.++...+||+++.|+.+
T Consensus 8 ~~~~ggfVg~iG~a~Ypi~~~Pmm~ 32 (58)
T PF15061_consen 8 ALFVGGFVGLIGAALYPIYFRPMMN 32 (58)
T ss_pred hhhHHHHHHHHHHHHhhhhcccccC
Confidence 3445556677788899999888764
No 100
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=43.39 E-value=41 Score=33.72 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=45.0
Q ss_pred cCCchhHHHHHHHHHHHc----CCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHh-
Q 014430 213 PLPEGELREKIEKLASSL----KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG- 287 (424)
Q Consensus 213 pl~~~~L~~~i~~l~~~~----g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElg- 287 (424)
.++..+..+.+++.+++. +++ .+|.+.|+ --++|.+. +++|-|..+. .+ ++.++.+.+-||+|
T Consensus 108 ~~~a~~~~~~~~~~~~~y~~~~~~~-~~V~~sdd----l~a~A~v~----~~~l~I~~~~--~f-s~~~l~~L~~HEigv 175 (349)
T PF08014_consen 108 TLDAEEAVSRLQERLKKYFGKEGFE-VKVELSDD----LLARAMVS----GDRLKINKNA--MF-SERDLEALLHHEIGV 175 (349)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCce-EEEEEcCC----cchhhccc----CCeeEEcCCC--Cc-CHHHHHHHHHHhhhh
Confidence 345667777777777776 543 24444443 34666544 3457777653 36 89999999999997
Q ss_pred hhhcccH
Q 014430 288 HWKLNHT 294 (424)
Q Consensus 288 H~~~~h~ 294 (424)
|+.....
T Consensus 176 H~lt~~N 182 (349)
T PF08014_consen 176 HLLTTLN 182 (349)
T ss_pred hhccccc
Confidence 7655443
No 101
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=43.32 E-value=11 Score=32.02 Aligned_cols=12 Identities=58% Similarity=0.722 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhh
Q 014430 279 VAVIAHELGHWK 290 (424)
Q Consensus 279 ~aVLaHElgH~~ 290 (424)
.+|++||+||.-
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 469999999963
No 102
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=43.07 E-value=1.7e+02 Score=29.31 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. +.|..++.+.|-
T Consensus 230 dP~iK~rrR~~~re~~~~~m~~~V~~AdVVItNP 263 (349)
T PRK12721 230 DPEIKQKRRELQSEIQSGSLANNVKKSTAVVRNP 263 (349)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEcC
Confidence 688888887776643 566667777763
No 103
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.89 E-value=1.8e+02 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. +.|..++.+.|-
T Consensus 237 dP~iK~rrR~~~re~a~~~m~~~V~~AdVVItNP 270 (359)
T PRK05702 237 DPEVKGRIRQLQREMARRRMMAAVPKADVVITNP 270 (359)
T ss_pred CHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECC
Confidence 688888887776553 466667777763
No 104
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=41.66 E-value=48 Score=37.54 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHcCCCCC---cEEEEeCCCCCCcccEEEEecCCCceEeEc-hhHHhhcCChhHHHHHHHHHHhhhhcc
Q 014430 217 GELREKIEKLASSLKFPLK---KLFVVDGSTRSSHSNAYMYGFFKNKRIVLY-DTLIQQCKNDEEIVAVIAHELGHWKLN 292 (424)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~---~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~-d~Ll~~l~~~~Ei~aVLaHElgH~~~~ 292 (424)
.++++.++-..+..|.|.+ .+.-++...-...-|...+.+. .+.+... ++.-+ - +-+.++.|+|||++|--.|
T Consensus 245 ~~~~~~~~~~e~~fg~~y~l~~~~V~v~~f~~GaMEN~Gl~tf~-~~~ll~~~~~at~-~-~~~~~~~viaHElaHqWfG 321 (859)
T COG0308 245 DETKRSIEFYEEYFGLPYALPIDIVAVPDFSAGAMENWGLVTFR-EKYLLADPETATD-S-DYENVEEVIAHELAHQWFG 321 (859)
T ss_pred HHHHHHhhhHHHhcCCCCCCcccEEeccCCCCccccccceeEEe-eeEEeeCcccchh-H-HHHHHHHHHHHHHhhhccc
Confidence 3455566666677787633 2333333222233444344343 3443333 23222 2 3466788999999998877
Q ss_pred cHH
Q 014430 293 HTM 295 (424)
Q Consensus 293 h~~ 295 (424)
+..
T Consensus 322 nlV 324 (859)
T COG0308 322 NLV 324 (859)
T ss_pred cee
Confidence 654
No 105
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=40.87 E-value=17 Score=32.69 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhhc
Q 014430 278 IVAVIAHELGHWKL 291 (424)
Q Consensus 278 i~aVLaHElgH~~~ 291 (424)
+.+++.||+||..-
T Consensus 7 ~i~i~~HE~gH~~~ 20 (192)
T PF02163_consen 7 LISIVLHELGHALA 20 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccccccccccc
Confidence 46889999999743
No 106
>PRK08156 type III secretion system protein SpaS; Validated
Probab=40.36 E-value=4e+02 Score=26.86 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. +.|..++.+.|-
T Consensus 225 dP~iK~r~R~~~re~a~~rm~~~Vp~AdVVItNP 258 (361)
T PRK08156 225 NPEIKSKRREAHQEILSEQVKSDIRNSRLIVANP 258 (361)
T ss_pred CHHHHHHHHHHHHHHHHhHHhccCCCCcEEEECC
Confidence 688888887776553 566667777763
No 107
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=40.16 E-value=60 Score=27.32 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=28.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 014430 2 VFPYMEAVVGFMILMYFFETYLDLRQHAALKLP 34 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~rq~~~~~~~ 34 (424)
.-||.+.++++..+..++...|--|+.+.-+++
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnr 64 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRSIQANRNR 64 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 358999999999999999999999999876544
No 108
>PRK05320 rhodanese superfamily protein; Provisional
Probab=39.16 E-value=41 Score=32.15 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=41.4
Q ss_pred hcccCccCCch-hHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHh
Q 014430 207 LFNKFTPLPEG-ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ 270 (424)
Q Consensus 207 lf~~~~pl~~~-~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~ 270 (424)
.|++|.|++|+ ++++.+.++|++.|+. .+|++.+. ..|+-+.|- ..+|-...+.++
T Consensus 7 ~~Y~f~~i~~~~~~~~~~~~~~~~~~~~-G~i~ia~e-----GiN~t~~g~--~~~id~~~~~l~ 63 (257)
T PRK05320 7 AAYKFVSLDDPETLRPLVLARCEALGLK-GTILLAPE-----GINLFLAGT--REAIDAFYAWLR 63 (257)
T ss_pred EEEceeecCCHHHHHHHHHHHHHHCCCe-EEEEEcCC-----CceEEEEee--HHHHHHHHHHHh
Confidence 47789999875 5789999999999986 67888763 579988873 355544444443
No 109
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=39.12 E-value=19 Score=32.94 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred ceEeEchhHHhhcC------ChhHHHHHHHHHHhhhhc
Q 014430 260 KRIVLYDTLIQQCK------NDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 260 ~~Ivl~d~Ll~~l~------~~~Ei~aVLaHElgH~~~ 291 (424)
..|.+..+.++... ..+-+..+++||+||.-.
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~lG 129 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLG 129 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777665431 224588999999999753
No 110
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=38.89 E-value=2.5e+02 Score=28.13 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEe
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d 241 (424)
||+++.+++++.++. +.|..++.+.|
T Consensus 229 dP~iK~r~R~~~re~~~~~m~~~V~~AdVVitN 261 (342)
T TIGR01404 229 DPEIKSKRRELHQEILSEQLKSDVKRSTLVVAN 261 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEC
Confidence 688888887776443 45666777766
No 111
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=38.42 E-value=2.5e+02 Score=26.98 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=51.1
Q ss_pred hHhhhhhcccCccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHH
Q 014430 201 PVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVA 280 (424)
Q Consensus 201 p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~a 280 (424)
|..+.-.|.+.++....++-..+-+++++..- +.+.-.++.. ....|.|.. +.=|+ +++-- +++||++
T Consensus 60 ~k~~~~~F~~~k~~~~~~li~~l~~la~~~Rk--~GllaLE~~~-~~~~d~Fi~---~glrl-----iVdG~-~~~~I~~ 127 (266)
T COG1291 60 PKALKEAFRKPKKEDYVDLIALLYELAEKARK--EGLLALEALA-DEIEDPFIK---DGLRL-----IVDGN-DPEEIEA 127 (266)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH--hhHHHHHHHH-HhccchHHH---HhHHH-----HhcCC-CHHHHHH
Confidence 44556667655555556777777777665531 2222233211 133444332 11122 22334 7999999
Q ss_pred HHHHHHhhhhcccHHHHHHHHHH
Q 014430 281 VIAHELGHWKLNHTMYSFIAVQV 303 (424)
Q Consensus 281 VLaHElgH~~~~h~~~~~~~~~~ 303 (424)
++=-|+.+..++|..-.-.+..+
T Consensus 128 ~me~Ei~~~ee~~~~~a~~~~~~ 150 (266)
T COG1291 128 LMEEEIETMEERHEKPAHAFTTA 150 (266)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999998888887655544433
No 112
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=38.28 E-value=99 Score=22.30 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014430 137 RHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQK 176 (424)
Q Consensus 137 ~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~ 176 (424)
..|++. .|+..++++..++..++.|+..+..-++++
T Consensus 19 n~G~~~----~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~k 54 (60)
T PF11391_consen 19 NVGFSD----GFFSRWLKAWLIAWPVAFPISLIVAPLVRK 54 (60)
T ss_pred HhCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568876 466666666666666666665555444443
No 113
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=37.50 E-value=2e+02 Score=22.63 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=29.6
Q ss_pred ccchhhcccCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014430 130 STFVIEARHGFNKQT-IWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175 (424)
Q Consensus 130 ~~f~le~~~g~~~~t-~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~ 175 (424)
+++.+-+.-|+++.. .+.++.+.+...+.+.+++.++.........
T Consensus 28 ~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~ 74 (121)
T PF02687_consen 28 REIAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLI 74 (121)
T ss_pred HHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567886644 4566777777777777777666666655554
No 114
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=37.47 E-value=25 Score=31.20 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.2
Q ss_pred hcCChhHHHHHHHHHHhhhhcccHH
Q 014430 271 QCKNDEEIVAVIAHELGHWKLNHTM 295 (424)
Q Consensus 271 ~l~~~~Ei~aVLaHElgH~~~~h~~ 295 (424)
++++++|-.++++|++||+...|-.
T Consensus 125 ~l~~d~e~~s~v~~~lA~Fy~~~r~ 149 (182)
T PF06861_consen 125 NLLNDHENASLVSHALAHFYLRYRR 149 (182)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999887754
No 115
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=37.39 E-value=21 Score=32.54 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhhhhc
Q 014430 276 EEIVAVIAHELGHWKL 291 (424)
Q Consensus 276 ~Ei~aVLaHElgH~~~ 291 (424)
.+..+++.||+||.-.
T Consensus 90 ~~~~~~i~HElgHaLG 105 (198)
T cd04327 90 PEFSRVVLHEFGHALG 105 (198)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 3567899999999643
No 116
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=37.29 E-value=2.8e+02 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHcCCCCCcEEEEe
Q 014430 216 EGELREKIEKLASSLKFPLKKLFVVD 241 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~d 241 (424)
.+..-.-++.+|++.|.+..+|++=.
T Consensus 78 ~~~~~~fi~~vA~~~~V~~~~v~VNs 103 (149)
T PF11694_consen 78 SSQMVHFIESVAKDLGVSKEEVYVNS 103 (149)
T ss_pred HHHHHHHHHHHHHHhCCChheEEEec
Confidence 35566789999999999999999854
No 117
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=37.15 E-value=19 Score=32.61 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhc
Q 014430 279 VAVIAHELGHWKL 291 (424)
Q Consensus 279 ~aVLaHElgH~~~ 291 (424)
..|+-||+||+--
T Consensus 10 ~~v~iHElGH~~~ 22 (182)
T cd06163 10 ILIFVHELGHFLV 22 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 4689999999753
No 118
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=36.85 E-value=24 Score=38.69 Aligned_cols=41 Identities=34% Similarity=0.322 Sum_probs=30.1
Q ss_pred CcccEEEEecCCCceEeEchhHHhh----------cCChhHHHHHHHHHHhhhh
Q 014430 247 SHSNAYMYGFFKNKRIVLYDTLIQQ----------CKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 247 ~~~NA~~~G~~~~~~Ivl~d~Ll~~----------l~~~~Ei~aVLaHElgH~~ 290 (424)
...||+.. +.+..|+++.++++- + +-.-+-+|||||++|--
T Consensus 480 ~~~na~Y~--~~~N~i~~pa~ilq~P~f~~~~P~~~-nyg~iG~vigHEl~H~F 530 (687)
T KOG3624|consen 480 AQVNAFYS--PEKNEIVFPAGLLQPPFFDLSYPDYL-NYGGIGFVIGHELTHGF 530 (687)
T ss_pred ceeecccc--CCCceEEEehhcccCCCCCcccchhh-hhHHHHHHHHHHHhhcc
Confidence 45677443 456888999888874 4 55668899999999954
No 119
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=36.81 E-value=21 Score=31.77 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhh
Q 014430 278 IVAVIAHELGHWK 290 (424)
Q Consensus 278 i~aVLaHElgH~~ 290 (424)
+.+|..||+||..
T Consensus 8 ~i~i~iHE~gH~~ 20 (180)
T cd05709 8 LISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHHH
Confidence 3578999999986
No 120
>PRK00523 hypothetical protein; Provisional
Probab=36.72 E-value=51 Score=24.96 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCCCCC
Q 014430 220 REKIEKLASSLKFPLK 235 (424)
Q Consensus 220 ~~~i~~l~~~~g~~~~ 235 (424)
.+.++.+..+.|-+++
T Consensus 42 e~mir~M~~QMGqKPS 57 (72)
T PRK00523 42 ENMIRAMYMQMGRKPS 57 (72)
T ss_pred HHHHHHHHHHhCCCcc
Confidence 3566777777776644
No 121
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=36.55 E-value=2.6e+02 Score=28.52 Aligned_cols=27 Identities=11% Similarity=0.356 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. ++|..++.+.|-
T Consensus 237 dP~iK~r~Rq~~re~a~~~m~~~V~~AdVVItNP 270 (386)
T PRK12468 237 DPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNP 270 (386)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECC
Confidence 688888877666543 566667777763
No 122
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=36.21 E-value=22 Score=35.31 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=38.3
Q ss_pred HHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhc--CChhHHHHHHHHHHhh---hhcccHHHHHH
Q 014430 225 KLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQC--KNDEEIVAVIAHELGH---WKLNHTMYSFI 299 (424)
Q Consensus 225 ~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l--~~~~Ei~aVLaHElgH---~~~~h~~~~~~ 299 (424)
+..++-|+. ++|- ..-||.| +|+. .|.++..+ .++.|+..+|-||++| +..+|+..+=.
T Consensus 126 ~~L~~~GlD---v~v~-------gV~AYST-LGwF-----~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FNEs 189 (337)
T PF10023_consen 126 AELRAQGLD---VYVG-------GVPAYST-LGWF-----DDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFNES 189 (337)
T ss_pred HHHHHcCCc---eeEe-------ccccccc-cccc-----CCcccccccCCCchHHHHHHHHHHhhceeecCCCchhhHH
Confidence 344556764 3442 2456666 2322 46666654 2899999999999999 45678776653
Q ss_pred H
Q 014430 300 A 300 (424)
Q Consensus 300 ~ 300 (424)
+
T Consensus 190 f 190 (337)
T PF10023_consen 190 F 190 (337)
T ss_pred H
Confidence 3
No 123
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=35.84 E-value=54 Score=33.08 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=43.7
Q ss_pred CCchhHHHHHHHHHHHcCCCC-CcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHh
Q 014430 214 LPEGELREKIEKLASSLKFPL-KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (424)
Q Consensus 214 l~~~~L~~~i~~l~~~~g~~~-~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElg 287 (424)
++.++..+.+++.+++.+... .+|.+.|+ --++|.+. +++|.|..+. .+ ++.++.+++-||+|
T Consensus 134 ~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~----l~a~a~v~----~~~l~i~~~a--~f-s~~~l~~L~~HEig 197 (366)
T TIGR02421 134 VSATEAAEILQQRLEDYFGEETIRVTLSDD----LPAGAMVS----GDKLKLNSDA--MF-SERDLEALIHHEIG 197 (366)
T ss_pred cCHHHHHHHHHHHHHHhCCCCceEEEECcc----hhHHHhcc----CCeEEECCCC--Cc-CHHHHHHHHHHhHH
Confidence 556788889999999888752 23333332 23566544 3467777753 35 89999999999999
No 124
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=35.54 E-value=23 Score=32.68 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhh
Q 014430 277 EIVAVIAHELGHWK 290 (424)
Q Consensus 277 Ei~aVLaHElgH~~ 290 (424)
=..+|+.||+||..
T Consensus 37 l~~~v~iHElgH~~ 50 (208)
T cd06161 37 LFLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999964
No 125
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=35.35 E-value=1.7e+02 Score=25.72 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhhhhH
Q 014430 159 AIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVM-MTLYPV 202 (424)
Q Consensus 159 ~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~p~ 202 (424)
+.++..++....++..-...++|+.+..+..+++..+. .++.|.
T Consensus 26 ~l~Ll~av~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~ 70 (161)
T COG3402 26 ALVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQ 70 (161)
T ss_pred HHHHHHHHHHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 34444555555555555555677777766665554333 344453
No 126
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=35.14 E-value=7.6 Score=35.68 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=21.2
Q ss_pred cccEEEEecCC-CceEeE-chhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 248 HSNAYMYGFFK-NKRIVL-YDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 248 ~~NA~~~G~~~-~~~Ivl-~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
..-|++-|++. .....+ .|+ .-....++|||+||--
T Consensus 115 ~G~A~~ggiC~~~~s~~i~~~~-------~~~~a~~~aHElGH~L 152 (207)
T cd04273 115 LGLAPVGGMCSPSRSCSINEDT-------GLSSAFTIAHELGHVL 152 (207)
T ss_pred eEEeccccCCCCCcceEEEcCC-------CceeEEeeeeechhhc
Confidence 34577777763 233332 232 1234689999999965
No 127
>PRK01415 hypothetical protein; Validated
Probab=34.40 E-value=52 Score=31.30 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=34.7
Q ss_pred hcccCccCCchh-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEe
Q 014430 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 255 (424)
Q Consensus 207 lf~~~~pl~~~~-L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G 255 (424)
.|.+|.|++|++ +++.+.++|++.|+. .+|++.+. ..|+-+.|
T Consensus 9 ~fY~f~~i~~~~~~~~~l~~~~~~~~~~-G~i~la~E-----GIN~tisg 52 (247)
T PRK01415 9 SAYSFVNIEEPANLIPKLLLIGKRKYVR-GTILLANE-----GFNGSFSG 52 (247)
T ss_pred EEEccccCCCHHHHHHHHHHHHHHcCCe-eEEEEccC-----ccceEeeC
Confidence 577899998754 789999999999985 67888663 57887776
No 128
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=33.86 E-value=54 Score=23.09 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhH
Q 014430 179 PYLAIYLWAFMFVLSLVMMTLYPV 202 (424)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~~~p~ 202 (424)
+.||++.+...+++++.-.+.+|.
T Consensus 21 P~ww~~~f~~tivfa~~Y~~~yp~ 44 (51)
T PF14715_consen 21 PRWWLWLFYGTIVFAVGYLVLYPG 44 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678888888888888777777764
No 129
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=33.60 E-value=22 Score=32.74 Aligned_cols=18 Identities=33% Similarity=0.219 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHhhhhc
Q 014430 274 NDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 274 ~~~Ei~aVLaHElgH~~~ 291 (424)
+..-..+|||||++|...
T Consensus 89 Prll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 89 PRLLTGSILAHELMHAWL 106 (212)
T ss_pred CHHHHhhHHHHHHHHHHh
Confidence 666679999999999653
No 130
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=33.44 E-value=2.9e+02 Score=23.18 Aligned_cols=80 Identities=15% Similarity=0.031 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhhHhhhhhcccCccCCchhHHHHH
Q 014430 144 TIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKI 223 (424)
Q Consensus 144 t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i 223 (424)
|-.+...-...+.+.+.++++|+..+. .||..+....++..++..++.+.+++++. +-+| |.-+..++
T Consensus 22 T~~El~~~a~~~~~~g~~~gl~la~~~---------g~~a~~pt~~ll~~~~~v~~gg~~l~rlK-RGKP--~~yl~r~l 89 (121)
T PF11990_consen 22 TADELGLAAGVGFVAGLVVGLPLALLT---------GWWAMIPTGALLGPILGVFVGGKLLARLK-RGKP--EGYLYRRL 89 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-cCCc--hhHHHHHH
Confidence 334444444445555555555543332 12323333334444555566677777764 2344 67888999
Q ss_pred HHHHHHcC-CCCC
Q 014430 224 EKLASSLK-FPLK 235 (424)
Q Consensus 224 ~~l~~~~g-~~~~ 235 (424)
+...++.| +..+
T Consensus 90 ~~~l~~~g~l~~~ 102 (121)
T PF11990_consen 90 QWRLARRGPLGGS 102 (121)
T ss_pred HHHHHHhcccCCC
Confidence 98888877 5433
No 131
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=33 Score=37.77 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=27.3
Q ss_pred CCCCcccEEEEecCCC-ceEeEchhHHhhcCChhHHHHHHHHHHhhhh
Q 014430 244 TRSSHSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (424)
Q Consensus 244 ~rs~~~NA~~~G~~~~-~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~ 290 (424)
..+....||+-|+... .+..+.. . ..- +......|+|||+||.-
T Consensus 291 ~~~~~G~a~~~~mCs~~~s~gv~~-~-~~~-~~~~~a~v~AhelgH~l 335 (716)
T KOG3607|consen 291 YGKYVGLAYFGGMCSPGHSGGVNK-F-HSD-ILLAFAVVLAHELGHNL 335 (716)
T ss_pred cCceeceeecccccCcccccceee-c-Ccc-cchhHHHHHHHHHHhhc
Confidence 3445678888888642 3322211 1 111 46778999999999964
No 132
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=32.35 E-value=27 Score=32.69 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhh
Q 014430 277 EIVAVIAHELGHWK 290 (424)
Q Consensus 277 Ei~aVLaHElgH~~ 290 (424)
=..+|+.||+||..
T Consensus 52 l~~~v~iHElgH~~ 65 (227)
T cd06164 52 LFASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999964
No 133
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=31.91 E-value=27 Score=33.57 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.2
Q ss_pred ChhHHHHHHHHHHhhh
Q 014430 274 NDEEIVAVIAHELGHW 289 (424)
Q Consensus 274 ~~~Ei~aVLaHElgH~ 289 (424)
+.+....|+.||+||-
T Consensus 212 ~~~~~~~v~vHE~GHs 227 (264)
T PF09471_consen 212 DNPSFKQVVVHEFGHS 227 (264)
T ss_dssp TSTTHHHHHHHHHHHH
T ss_pred Ccccccceeeeecccc
Confidence 4457899999999994
No 134
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=31.41 E-value=91 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=21.9
Q ss_pred ceEeEchhHHhhc-CChhHHHHHHHHHHhhh
Q 014430 260 KRIVLYDTLIQQC-KNDEEIVAVIAHELGHW 289 (424)
Q Consensus 260 ~~Ivl~d~Ll~~l-~~~~Ei~aVLaHElgH~ 289 (424)
..|.|.....+.- ...+.-+++|.||+.|+
T Consensus 77 ~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 77 YTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred eEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 5799999888742 15577899999999994
No 135
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=31.28 E-value=3.2e+02 Score=29.70 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. +.|..++.+.|-
T Consensus 493 dP~iK~r~R~~~re~~~~~m~~~V~~AdvVitNP 526 (609)
T PRK12772 493 DPQIKAKIKQKQREMAMQRMMQEVPKATVVVTNP 526 (609)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEECC
Confidence 688888877766543 556667777663
No 136
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=30.85 E-value=2.8e+02 Score=22.21 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=20.3
Q ss_pred cchhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014430 131 TFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIII 172 (424)
Q Consensus 131 ~f~le~~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~ 172 (424)
.|.+.+++=|+.+..... .+++....+..+++.++-.+...
T Consensus 43 ~f~ln~~~tF~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~ 83 (117)
T PF04138_consen 43 NFILNRRFTFRSRGRSSR-WRQFLRFFVVYLLGLLLNTLILW 83 (117)
T ss_pred HHHHHHHHhccCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666655555444 44444444444555444444444
No 137
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=29.83 E-value=31 Score=32.91 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCceEeEchhHHhhcCChhHHHHHHHHHHhhhhcccHH
Q 014430 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (424)
Q Consensus 258 ~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h~~ 295 (424)
....|-+++. ..+.+...--+.+.||+|||..+-..
T Consensus 185 a~D~Iq~p~~--~aF~da~~yyaTl~HElghwtgh~~r 220 (316)
T COG4227 185 ASDSIQLPPF--EAFRDAINYYATLLHELGHWTGHEAR 220 (316)
T ss_pred ccCeeccCCh--hhccchHhHHHHHHHHhccccCchhh
Confidence 3455555543 23336778899999999999876544
No 138
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=29.39 E-value=13 Score=36.06 Aligned_cols=11 Identities=82% Similarity=1.051 Sum_probs=10.0
Q ss_pred HHHHHHHHhhh
Q 014430 279 VAVIAHELGHW 289 (424)
Q Consensus 279 ~aVLaHElgH~ 289 (424)
..|+|||+||.
T Consensus 166 igv~~HE~gH~ 176 (286)
T TIGR03296 166 VGVIAHELGHD 176 (286)
T ss_pred eeeeehhhhcc
Confidence 69999999995
No 139
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=29.03 E-value=4e+02 Score=23.38 Aligned_cols=32 Identities=6% Similarity=-0.043 Sum_probs=18.2
Q ss_pred ccHHhhccchhhcccCCCCCCHHHHHHHHHHHH
Q 014430 124 LPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGM 156 (424)
Q Consensus 124 lP~~~y~~f~le~~~g~~~~t~~~~~~d~~k~~ 156 (424)
.....|--..+.+.+| ++.+.+..+.-..-+.
T Consensus 76 v~i~a~~i~~~~~~~~-~~~s~~~~~~~a~y~~ 107 (170)
T PF06930_consen 76 VFIMAYLIHWMMKTFG-GRPSYKKCLAFAAYAA 107 (170)
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Confidence 4444555556777777 7777655544444333
No 140
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=28.92 E-value=35 Score=30.90 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhhh
Q 014430 276 EEIVAVIAHELGHWK 290 (424)
Q Consensus 276 ~Ei~aVLaHElgH~~ 290 (424)
-=+..+..||+||..
T Consensus 39 ~l~~~l~iHElgH~~ 53 (183)
T cd06160 39 ALLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678899999974
No 141
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.75 E-value=89 Score=23.54 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=9.2
Q ss_pred HHHHHHHHHcCCCCC
Q 014430 221 EKIEKLASSLKFPLK 235 (424)
Q Consensus 221 ~~i~~l~~~~g~~~~ 235 (424)
+.++.+..+.|-+++
T Consensus 42 ~~iR~M~~qmGqKpS 56 (71)
T COG3763 42 EMIRMMMAQMGQKPS 56 (71)
T ss_pred HHHHHHHHHhCCCch
Confidence 455666667776644
No 142
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=28.60 E-value=33 Score=32.92 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhh
Q 014430 277 EIVAVIAHELGHWK 290 (424)
Q Consensus 277 Ei~aVLaHElgH~~ 290 (424)
=..+|+.||+||..
T Consensus 117 L~isv~iHElgHa~ 130 (263)
T cd06159 117 LVVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999974
No 143
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=28.52 E-value=2.6e+02 Score=25.05 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=17.0
Q ss_pred hhhhcccCccCCchhHHHHHHHH
Q 014430 204 IAPLFNKFTPLPEGELREKIEKL 226 (424)
Q Consensus 204 i~plf~~~~pl~~~~L~~~i~~l 226 (424)
.+|.-++-+|+.++|.+.+.+..
T Consensus 118 ~APv~~~~kpi~~~e~~k~lk~~ 140 (184)
T smart00793 118 YAPADTEKQPVIPEKLKKKLKKK 140 (184)
T ss_pred cCCcccccCCCCCHHHHHHHHHH
Confidence 47888888999888876665543
No 144
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=28.37 E-value=1.4e+02 Score=31.55 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHhhhhc
Q 014430 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (424)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~ 291 (424)
..=++--.++++..|++..+-.+ |.| .|+ |.+|++ .+.+=|+...-++ +.-.-..=..||.||-..
T Consensus 207 ~~Q~~~~~~~~~~~G~d~~~grl-d~s---~HP--Ft~~~~-~~DvRiTTry~e~--d~~~~l~s~iHE~GHalY 272 (494)
T PF02074_consen 207 EKQKAFSRELLEYLGFDFDRGRL-DES---AHP--FTTGFG-PNDVRITTRYDED--DFLSALFSTIHETGHALY 272 (494)
T ss_dssp HHHHHHHHHHHHHHT--GCGEEE-EE----SS---EEEEEE-TTEEEEEE--BTT--BTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccceEE-ecC---CCC--CCCCCC-CCceeeecccccc--cHHHHHHHHHHHHHHHHH
Confidence 33345667889999999777555 543 554 557766 4566666654322 122222334599999654
No 145
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=28.21 E-value=35 Score=31.25 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHhhhh
Q 014430 275 DEEIVAVIAHELGHWK 290 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~~ 290 (424)
+-.+..+..||+||..
T Consensus 19 ~~~~l~t~~HE~gHal 34 (200)
T PF13398_consen 19 PFRLLVTFVHELGHAL 34 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456779999999964
No 146
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=28.19 E-value=99 Score=29.92 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHh
Q 014430 179 PYLAIYLWAFMFVLSLVMMTLYPVL 203 (424)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~~~p~~ 203 (424)
+.||+|.+...++|.++-.+.||.+
T Consensus 27 P~ww~~~f~~~i~~~~~y~~~yp~~ 51 (285)
T TIGR00782 27 PRWWLWTFYATIVWGFGYLVAYPAW 51 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6788888888888888877777764
No 147
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=27.81 E-value=85 Score=32.34 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCCCcccEEEEecCCC--------ceEeEchhHHh-------hcCChhHHHHHHHHHHhhhhcccH
Q 014430 243 STRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLNHT 294 (424)
Q Consensus 243 s~rs~~~NA~~~G~~~~--------~~Ivl~d~Ll~-------~l~~~~Ei~aVLaHElgH~~~~h~ 294 (424)
++..+..+|+..++.+. +.+++.-++-. .+ +.+|+. .|.||+||.-|...
T Consensus 160 ~R~~K~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL-~~~~v~-tLfHEfGHalH~~l 224 (422)
T cd06456 160 AREGKRGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALL-THDEVT-TLFHEFGHALHHLL 224 (422)
T ss_pred CCCCCCCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCcc-CHHHHH-HHHHHHHHHHHHHH
Confidence 44456678888887432 33344333222 13 556654 48999999887554
No 148
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=27.18 E-value=10 Score=35.52 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhc-ccHHH
Q 014430 277 EIVAVIAHELGHWKL-NHTMY 296 (424)
Q Consensus 277 Ei~aVLaHElgH~~~-~h~~~ 296 (424)
...-++.||+|||-. .|++.
T Consensus 136 n~g~t~~HEvGH~lGL~HtF~ 156 (225)
T cd04275 136 NLGDTATHEVGHWLGLYHTFQ 156 (225)
T ss_pred cccceeEEeccceeeeeeeec
Confidence 456789999999863 45543
No 149
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=26.98 E-value=37 Score=32.84 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhhcc
Q 014430 277 EIVAVIAHELGHWKLN 292 (424)
Q Consensus 277 Ei~aVLaHElgH~~~~ 292 (424)
=+.+|+.||+||..--
T Consensus 134 l~isvvvHElgHal~A 149 (277)
T cd06162 134 LLISGVVHEMGHGVAA 149 (277)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678999999997543
No 150
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.65 E-value=3.7e+02 Score=22.25 Aligned_cols=79 Identities=19% Similarity=0.097 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhhHhhhhhcccCccCCchhHHHHH
Q 014430 144 TIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKI 223 (424)
Q Consensus 144 t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i 223 (424)
|-.+...--..+.+.+.++++|+. ++.. . |..+-...++..++..++.+.+++.+.. =+| |.-+..++
T Consensus 19 T~~El~~~~~~~~~~gl~~g~~l~----~~~~----~-w~~~p~~~lig~~l~v~~gg~~l~rlKR-GrP--e~yl~r~l 86 (111)
T TIGR03750 19 TADELGVAAGVGLAAGLVLGLLLA----LLAG----P-WALIPTGALLGPILVVLIGGKLLARLKR-GKP--EGYLYRKL 86 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----HHHH----H-HHHHHHHHHHHHHHHHHHhHHHHHHHHc-CCC--chHHHHHH
Confidence 344445555555656666655542 2211 1 2222222223334445666777777642 344 78899999
Q ss_pred HHHHHHcCCCC
Q 014430 224 EKLASSLKFPL 234 (424)
Q Consensus 224 ~~l~~~~g~~~ 234 (424)
+...++.++..
T Consensus 87 ~~~~~~~~l~~ 97 (111)
T TIGR03750 87 EWKLARLGLGR 97 (111)
T ss_pred HHHHHHcCCCC
Confidence 99999988753
No 151
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=26.54 E-value=2e+02 Score=29.13 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhccccHHhhccchhhcccCCCCCCH----------HHHHHHHHH
Q 014430 110 SFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTI----------WLFFRDMIK 154 (424)
Q Consensus 110 ~f~~~~~~~~~~~~lP~~~y~~f~le~~~g~~~~t~----------~~~~~d~~k 154 (424)
+|+..+++++.++-.|.-+.-++..+++|.+.+++. +.++.|++-
T Consensus 281 lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW 335 (416)
T KOG2765|consen 281 LFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLW 335 (416)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHH
Confidence 678888999999999888888888999999977664 556666643
No 152
>PRK00523 hypothetical protein; Provisional
Probab=26.27 E-value=2.1e+02 Score=21.71 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 014430 8 AVVGFMILMYFFETYLDLRQHAALKLPKLP 37 (424)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~rq~~~~~~~~~p 37 (424)
+++..+++..+.-.|+..|+.+++-+.++|
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~~NPp 39 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 334445566667889999999887666655
No 153
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=25.82 E-value=22 Score=35.91 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCCcccEEEE----ecCCCceEeEchhHH---hhcCChhHHHHHHHHHHhhhhcccHHH
Q 014430 245 RSSHSNAYMY----GFFKNKRIVLYDTLI---QQCKNDEEIVAVIAHELGHWKLNHTMY 296 (424)
Q Consensus 245 rs~~~NA~~~----G~~~~~~Ivl~d~Ll---~~l~~~~Ei~aVLaHElgH~~~~h~~~ 296 (424)
.+..-||.+. |.+++-++.++++-- -.- +-+.=..|++||.||-......-
T Consensus 146 gsg~NNAnf~TPpDG~~prMqMylw~~~~~~~p~r-Dg~~D~~Ii~HEy~HGiSnRLvg 203 (378)
T PF02128_consen 146 GSGTNNANFATPPDGQPPRMQMYLWTPSTPASPNR-DGDFDNGIIAHEYGHGISNRLVG 203 (378)
T ss_pred CCCcCCceeecCCCCCCceeeEEEecCCCCcCCCC-CcccccCeeEEeecccccccccC
Confidence 3466788777 555677889988754 222 44445789999999998876654
No 154
>PRK09108 type III secretion system protein HrcU; Validated
Probab=25.51 E-value=7e+02 Score=25.05 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHc-------CCCCCcEEEEeC
Q 014430 216 EGELREKIEKLASSL-------KFPLKKLFVVDG 242 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~d~ 242 (424)
||+++.+++++.++. +.|..++.+.|-
T Consensus 232 dP~iK~rrRq~~re~a~~~m~~~V~~AdvVItNP 265 (353)
T PRK09108 232 DPHIKGERKRLARELAFAPPRQRVARANVVVVNP 265 (353)
T ss_pred CHHHHHHHHHHHHHHHHhHHhccCCCCcEEEECC
Confidence 688888877766543 456667777663
No 155
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=25.33 E-value=45 Score=36.05 Aligned_cols=29 Identities=41% Similarity=0.399 Sum_probs=19.5
Q ss_pred EeEchhHHhhcCChhHHHHHHHHHHhhhhccc
Q 014430 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (424)
Q Consensus 262 Ivl~d~Ll~~l~~~~Ei~aVLaHElgH~~~~h 293 (424)
.+..++++. .+.+...|+|||++|---|+
T Consensus 266 tf~~~~ll~---~d~s~~~viaHElAHqWfGN 294 (601)
T TIGR02411 266 TFATPTLIA---GDRSNVDVIAHELAHSWSGN 294 (601)
T ss_pred eeecccccc---CChhhhhhHHHHHHhhccCc
Confidence 344455542 34456789999999987763
No 156
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=24.50 E-value=6.5e+02 Score=25.09 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=22.9
Q ss_pred hhcccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014430 134 IEARHGFNKQTI-WLFFRDMIKGMILAIVLGPPIVSAIII 172 (424)
Q Consensus 134 le~~~g~~~~t~-~~~~~d~~k~~~l~~vl~~~l~~~~~~ 172 (424)
+-+..|+++... ..++..-+.-.+++.++|.++...+.+
T Consensus 301 ilralG~~~~~I~~~~l~E~~~l~l~g~~~G~~lg~~~~~ 340 (411)
T TIGR02212 301 ILRTLGATPGQIMRIFIVQGLLIGVIGTLLGVILGVLLAL 340 (411)
T ss_pred HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567765444 556666666666666666665554444
No 157
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=24.31 E-value=4.1e+02 Score=21.96 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhh
Q 014430 154 KGMILAIVLGPPIVSAIIIIVQK--GGPYLAIYLWAFMFVLSLVMMTLY 200 (424)
Q Consensus 154 k~~~l~~vl~~~l~~~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 200 (424)
|+.++++++++.+..+..+++.. .++..-..+.++..+.+++..+.+
T Consensus 26 k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I~~lAvvQi~VqL~y 74 (110)
T TIGR02908 26 KKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFILLLAAVQVAFQLYY 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445554433 334333444444445555555444
No 158
>PHA00527 hypothetical protein
Probab=24.20 E-value=1.4e+02 Score=24.23 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=39.0
Q ss_pred hhHhhhhhcccCccCCchhHHHHHHHHHHHcCCCCCcEEEEeCCCC-----CCcccEEEEecCCCceEeEchhHHhhcCC
Q 014430 200 YPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTR-----SSHSNAYMYGFFKNKRIVLYDTLIQQCKN 274 (424)
Q Consensus 200 ~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~d~s~r-----s~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~ 274 (424)
.|.+..|||..-+-.= -.-+...++++.++|....+--...+... +...|-++.|... +
T Consensus 9 ~Pr~~VPLF~S~~v~~-CR~~~EWQ~~~~~LGVD~~~~~mla~~~~S~~~s~~~~~L~~~GVFN--------G------- 72 (129)
T PHA00527 9 LPRFFVPLFHSANVYL-CRSKEEWQQACIHLGVDSGGNEMLAGATQSYCNTETGENLYLLGVFN--------G------- 72 (129)
T ss_pred CchhheeeeccceEEE-EcChHHHHHHHHHhCCCcCCchhhhccccccccccCCCeEEEEEEec--------c-------
Confidence 4677788886433321 11135678889999987553322211111 2334555555431 1
Q ss_pred hhHHHHHHHHHHhhh
Q 014430 275 DEEIVAVIAHELGHW 289 (424)
Q Consensus 275 ~~Ei~aVLaHElgH~ 289 (424)
-.+-|+||-+|.
T Consensus 73 ---K~~T~~HECAH~ 84 (129)
T PHA00527 73 ---KAATLVHECAHV 84 (129)
T ss_pred ---HHHHHHHHHHHH
Confidence 145689999995
No 159
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=23.41 E-value=48 Score=31.59 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhh
Q 014430 275 DEEIVAVIAHELGH 288 (424)
Q Consensus 275 ~~Ei~aVLaHElgH 288 (424)
+-|++.|+||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 56799999999999
No 160
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=22.68 E-value=49 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.4
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 014430 137 RHGFNKQTIWLFFRDMIK 154 (424)
Q Consensus 137 ~~g~~~~t~~~~~~d~~k 154 (424)
.||||..|++.+...+.+
T Consensus 25 NYGf~E~tW~~Y~~kq~~ 42 (45)
T PF05182_consen 25 NYGFNEETWREYCKKQRQ 42 (45)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 689999999999887754
No 161
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=3e+02 Score=20.76 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 014430 11 GFMILMYFFETYLDLRQHAALKLPKLP 37 (424)
Q Consensus 11 ~~~~~~~~~~~~l~~rq~~~~~~~~~p 37 (424)
+.+++..+...|+..||.++.-+..+|
T Consensus 12 l~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 12 LALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 334444455789999999887666655
No 162
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=21.90 E-value=4.1e+02 Score=22.00 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHhhh
Q 014430 149 FRDMIKGMILAIVLGPPIVSAIIIIV--QKGGPYLAIYLWAFMFVLSLVMMTLY 200 (424)
Q Consensus 149 ~~d~~k~~~l~~vl~~~l~~~~~~l~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (424)
++.++.+++++.++ ..+..|+. +.+++..-+.+.....+++++..++|
T Consensus 17 ~k~y~iGFvLsIiL----T~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvy 66 (111)
T COG3125 17 LKSYLIGFVLSIIL----TLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVY 66 (111)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444 44444443 33333333333333444455555444
No 163
>PRK01844 hypothetical protein; Provisional
Probab=21.83 E-value=2.8e+02 Score=21.05 Aligned_cols=29 Identities=7% Similarity=-0.030 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 014430 9 VVGFMILMYFFETYLDLRQHAALKLPKLP 37 (424)
Q Consensus 9 ~~~~~~~~~~~~~~l~~rq~~~~~~~~~p 37 (424)
.++.+++..+.-.|+..|+.+++-+..+|
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34455566677889999999887666655
No 164
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.60 E-value=5.9e+02 Score=22.82 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhhhHhhhhhcccCccCCchhHHHHHHHHHH
Q 014430 155 GMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLAS 228 (424)
Q Consensus 155 ~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~ 228 (424)
+.++-.++++....+...+.++....|.-.+.++. ...++. ..+.|+|...+|+.+=+-...+.++|-
T Consensus 73 gi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~-~W~ivF-----~~lnP~fp~~~~~~~l~~nTiiT~~Ci 140 (173)
T PF11085_consen 73 GIVFIGVFSIVAALLYYALLKKFKGPWPGILYGLA-WWAIVF-----FVLNPIFPMIKPVTELDWNTIITTLCI 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHHH-----HHhcccccCChhhhhCchhHHHHHHHH
Confidence 44444555555555566677887655543322221 111111 234577766777766666677777773
No 165
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=21.45 E-value=2.6e+02 Score=28.22 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHcCCC---CCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcC------ChhHHHHHHHHHHh
Q 014430 217 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELG 287 (424)
Q Consensus 217 ~~L~~~i~~l~~~~g~~---~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~------~~~Ei~aVLaHElg 287 (424)
....++.++++++++-. ...++--|.. ..=.+|...+-++....|+.-+.....+. ..+.-..++-||+.
T Consensus 228 ~~Va~~f~aIA~Ec~s~~~g~~t~~C~D~~-~~C~~~vlAYT~p~~~~I~~Cp~ff~~lp~~~~~C~~qDqatt~LHE~T 306 (359)
T PF02102_consen 228 NTVASRFNAIASECSSTSSGSTTYYCTDPY-GYCSSGVLAYTLPSQNQIVNCPIFFSDLPALSNRCHAQDQATTTLHEMT 306 (359)
T ss_dssp HHHHHHHHHHHHHHT-SB-SS-EEESS-SS-S---TT--EEEEGGGTEEEE-HHHHHH--SS--STT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCceEEEEECCC-CccCCCeEEEEEcCCCeEEECchhhccCCCccccccCCCccchhhhhhh
Confidence 35667788999988743 2233322321 11123444444566788988876664320 44567799999999
Q ss_pred hhhc
Q 014430 288 HWKL 291 (424)
Q Consensus 288 H~~~ 291 (424)
|...
T Consensus 307 H~~~ 310 (359)
T PF02102_consen 307 HAPA 310 (359)
T ss_dssp T-TT
T ss_pred cccc
Confidence 9863
No 166
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=20.82 E-value=59 Score=29.24 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhh
Q 014430 278 IVAVIAHELGHWK 290 (424)
Q Consensus 278 i~aVLaHElgH~~ 290 (424)
+.++..||+||-.
T Consensus 9 ~~~i~~HE~aHa~ 21 (181)
T cd06158 9 LLAITLHEFAHAY 21 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4688999999976
No 167
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=20.75 E-value=4.9e+02 Score=23.90 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=15.7
Q ss_pred hhhhcccCccCCchhHHHHHHH
Q 014430 204 IAPLFNKFTPLPEGELREKIEK 225 (424)
Q Consensus 204 i~plf~~~~pl~~~~L~~~i~~ 225 (424)
.+|.-++-+|+.+++.++..+.
T Consensus 130 yAP~dt~nkPi~~~~~rk~lK~ 151 (210)
T PRK01100 130 YAPADTESLPLIGEKLRKTLKR 151 (210)
T ss_pred cCCcCCccCCCCCHHHHHHHHH
Confidence 4677778889887777665543
No 168
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=20.64 E-value=6.6e+02 Score=24.22 Aligned_cols=28 Identities=14% Similarity=0.444 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhchHH--HHHHHh
Q 014430 63 HFVHEFVTILMDSAILLFRILP--WFWKKS 90 (424)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~g~~~--~~~~~~ 90 (424)
.-..++...++..+++.+.+.| .+|.++
T Consensus 139 ~~~~Dl~q~~vGA~~lA~p~apTeEvw~lA 168 (267)
T PF09622_consen 139 GYLADLGQMIVGALFLAFPFAPTEEVWLLA 168 (267)
T ss_pred ccHHHHHHHHHHHHHHhcCcCcchHHHHHH
Confidence 3455666677777777777766 566544
No 169
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.61 E-value=4.9e+02 Score=21.44 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHhhh
Q 014430 149 FRDMIKGMILAIVLGPPIVSAIIIIV--QKGGPYLAIYLWAFMFVLSLVMMTLY 200 (424)
Q Consensus 149 ~~d~~k~~~l~~vl~~~l~~~~~~l~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (424)
.+.++.+++++.++. .+..+++ ...++..-..+.++..+++++..+.+
T Consensus 15 ~k~yviGFiLSliLT----~i~F~lv~~~~~~~~~~~~~i~~lA~vQi~VqL~~ 64 (109)
T PRK10582 15 VKTYMTGFILSIILT----VIPFWMVMTGAASPAVILGTILAMAVVQILVHLVC 64 (109)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444 2233333 23344333444444445555555544
No 170
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.58 E-value=7.1e+02 Score=23.33 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEecCCCceEeEchhHHhhcCChhHHHHHHHHHHh
Q 014430 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (424)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~d~s~rs~~~NA~~~G~~~~~~Ivl~d~Ll~~l~~~~Ei~aVLaHElg 287 (424)
.+.-...++.+-+ |...+.-.-+| .+.++..=+.|+..-|.+.++ +..-+.-.++-|==
T Consensus 87 pGAa~avL~~lr~--~W~~~~pVa~n-----r~qD~V~R~vGrpGVvLVgEG------~~~Rv~~Ll~~E~k 145 (224)
T PF13829_consen 87 PGAAGAVLDNLRR--GWRVTEPVAVN-----RTQDAVHRVVGRPGVVLVGEG------PPSRVKKLLAQEKK 145 (224)
T ss_pred CchHHHHHHhhcC--CcccCCceeec-----CccceEEEecCCCcEEEEecC------CHHHHHHHHHHHHH
Confidence 3555566665444 55544423344 245676667787788888877 56666666666643
No 171
>PRK01844 hypothetical protein; Provisional
Probab=20.53 E-value=1.4e+02 Score=22.69 Aligned_cols=15 Identities=0% Similarity=0.005 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCCCCC
Q 014430 221 EKIEKLASSLKFPLK 235 (424)
Q Consensus 221 ~~i~~l~~~~g~~~~ 235 (424)
+.++.+....|-+++
T Consensus 42 ~mir~Mm~QMGqkPS 56 (72)
T PRK01844 42 QMLKMMMMQMGQKPS 56 (72)
T ss_pred HHHHHHHHHhCCCcc
Confidence 456667777776543
Done!