Query 014432
Match_columns 424
No_of_seqs 162 out of 742
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:04:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 2E-120 4E-125 951.9 38.5 403 1-403 1-403 (497)
2 PLN02596 hexokinase-like 100.0 8E-119 2E-123 936.9 38.3 401 1-403 2-403 (490)
3 PLN02362 hexokinase 100.0 9E-119 2E-123 940.9 37.2 402 1-403 1-402 (509)
4 PLN02914 hexokinase 100.0 1E-113 2E-118 898.6 33.4 366 36-403 36-401 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 2E-105 5E-110 826.1 29.5 367 29-404 19-389 (474)
6 PTZ00107 hexokinase; Provision 100.0 5E-103 1E-107 816.0 33.3 350 35-403 5-381 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 1.2E-92 2.6E-97 716.5 29.1 366 32-403 12-381 (466)
8 PF00349 Hexokinase_1: Hexokin 100.0 1.4E-62 3.1E-67 464.8 21.5 202 36-242 2-206 (206)
9 PF03727 Hexokinase_2: Hexokin 100.0 1.9E-46 4.1E-51 362.6 9.8 157 244-404 1-159 (243)
10 PRK09698 D-allose kinase; Prov 98.5 3.9E-06 8.4E-11 83.1 15.7 163 94-282 3-168 (302)
11 PRK13311 N-acetyl-D-glucosamin 98.3 3E-05 6.6E-10 75.4 16.2 137 97-263 2-142 (256)
12 TIGR00744 ROK_glcA_fam ROK fam 98.1 9.2E-05 2E-09 73.6 16.0 136 98-262 1-142 (318)
13 PRK12408 glucokinase; Provisio 98.1 3.3E-05 7.1E-10 78.5 13.0 192 90-330 10-220 (336)
14 PRK13310 N-acetyl-D-glucosamin 98.1 9.5E-05 2.1E-09 73.3 15.3 137 97-263 2-142 (303)
15 COG1940 NagC Transcriptional r 98.0 0.00014 3E-09 72.4 14.0 168 93-286 4-175 (314)
16 PRK09557 fructokinase; Reviewe 97.9 0.0003 6.6E-09 69.8 15.9 136 97-262 2-141 (301)
17 PF00480 ROK: ROK family; Int 97.8 0.00035 7.5E-09 63.5 13.1 132 99-262 1-136 (179)
18 PRK05082 N-acetylmannosamine k 97.8 0.00053 1.1E-08 67.6 15.2 136 97-263 3-141 (291)
19 PRK14101 bifunctional glucokin 97.8 0.0002 4.3E-09 78.7 12.0 186 94-330 17-217 (638)
20 PRK00292 glk glucokinase; Prov 97.7 0.00056 1.2E-08 68.5 13.9 182 97-329 4-201 (316)
21 PTZ00288 glucokinase 1; Provis 97.7 0.001 2.2E-08 69.7 16.1 223 59-330 5-272 (405)
22 TIGR00749 glk glucokinase, pro 97.3 0.0026 5.7E-08 63.9 11.7 185 98-331 1-203 (316)
23 smart00732 YqgFc Likely ribonu 97.1 0.0042 9E-08 51.1 9.3 48 96-153 2-49 (99)
24 PF02685 Glucokinase: Glucokin 96.6 0.012 2.6E-07 59.8 9.7 184 98-329 1-201 (316)
25 PF01869 BcrAD_BadFG: BadF/Bad 96.0 0.095 2.1E-06 51.2 12.0 137 98-288 1-137 (271)
26 PF00370 FGGY_N: FGGY family o 95.5 0.061 1.3E-06 51.6 8.3 59 97-158 2-63 (245)
27 KOG1794 N-Acetylglucosamine ki 94.7 0.43 9.3E-06 48.2 11.8 138 94-268 2-144 (336)
28 COG2971 Predicted N-acetylgluc 93.3 0.99 2.2E-05 45.7 11.4 122 96-255 6-128 (301)
29 PRK13318 pantothenate kinase; 93.1 1 2.2E-05 44.0 11.1 95 233-336 113-210 (258)
30 TIGR01314 gntK_FGGY gluconate 92.5 0.38 8.3E-06 51.4 7.9 60 97-159 2-64 (505)
31 TIGR01315 5C_CHO_kinase FGGY-f 92.4 0.42 9.2E-06 51.7 8.1 60 97-159 2-64 (541)
32 TIGR01311 glycerol_kin glycero 92.2 0.39 8.5E-06 51.2 7.4 60 97-159 3-65 (493)
33 PRK00047 glpK glycerol kinase; 91.4 0.51 1.1E-05 50.4 7.2 61 96-159 6-69 (498)
34 PRK10939 autoinducer-2 (AI-2) 91.4 0.67 1.5E-05 49.8 8.1 61 96-159 4-69 (520)
35 PRK15027 xylulokinase; Provisi 91.0 0.68 1.5E-05 49.3 7.6 59 97-158 2-63 (484)
36 TIGR01234 L-ribulokinase L-rib 90.3 0.91 2E-05 49.0 7.9 60 97-159 3-77 (536)
37 TIGR01312 XylB D-xylulose kina 90.1 0.67 1.5E-05 48.8 6.6 60 98-160 1-63 (481)
38 COG1070 XylB Sugar (pentulose 89.9 0.83 1.8E-05 49.1 7.2 61 96-158 5-68 (502)
39 PTZ00294 glycerol kinase-like 89.7 1.2 2.5E-05 47.8 8.1 61 96-159 3-66 (504)
40 PRK10331 L-fuculokinase; Provi 88.5 1.3 2.8E-05 46.9 7.4 60 96-158 3-67 (470)
41 PLN02295 glycerol kinase 88.5 1.4 3E-05 47.3 7.7 61 97-160 2-65 (512)
42 TIGR02628 fuculo_kin_coli L-fu 87.7 1.7 3.7E-05 46.0 7.7 58 97-157 3-65 (465)
43 PRK04123 ribulokinase; Provisi 85.2 3.3 7.1E-05 44.8 8.4 61 96-159 4-74 (548)
44 PRK13321 pantothenate kinase; 83.3 2.8 6.2E-05 41.0 6.3 17 97-113 2-18 (256)
45 TIGR02627 rhamnulo_kin rhamnul 83.1 2.7 5.8E-05 44.4 6.5 59 98-156 1-63 (454)
46 TIGR01174 ftsA cell division p 81.9 44 0.00095 34.2 14.7 57 97-157 2-59 (371)
47 COG0837 Glk Glucokinase [Carbo 81.5 45 0.00097 34.2 13.9 225 95-384 6-247 (320)
48 PRK13410 molecular chaperone D 81.3 4.5 9.8E-05 45.3 7.7 19 95-113 2-20 (668)
49 TIGR01175 pilM type IV pilus a 79.6 21 0.00046 35.9 11.3 101 96-217 4-106 (348)
50 PRK15080 ethanolamine utilizat 78.3 20 0.00044 35.3 10.4 115 89-238 18-132 (267)
51 CHL00094 dnaK heat shock prote 78.1 6.4 0.00014 43.5 7.5 18 96-113 3-20 (621)
52 PTZ00186 heat shock 70 kDa pre 73.6 14 0.00031 41.3 8.8 41 222-262 188-230 (657)
53 PTZ00400 DnaK-type molecular c 73.0 11 0.00023 42.2 7.6 19 95-113 41-59 (663)
54 PRK05183 hscA chaperone protei 72.7 7.9 0.00017 42.9 6.5 20 94-113 18-37 (616)
55 PRK00290 dnaK molecular chaper 70.6 8.3 0.00018 42.6 6.0 18 96-113 3-20 (627)
56 PLN03184 chloroplast Hsp70; Pr 67.4 18 0.0004 40.5 7.9 39 222-260 200-240 (673)
57 PRK13324 pantothenate kinase; 66.3 39 0.00084 33.5 9.2 45 97-149 2-46 (258)
58 KOG2517 Ribulose kinase and re 66.2 46 0.00099 36.4 10.3 97 94-201 5-103 (516)
59 COG0554 GlpK Glycerol kinase [ 62.3 23 0.00051 38.2 7.1 106 95-214 5-119 (499)
60 PTZ00009 heat shock 70 kDa pro 61.9 22 0.00047 39.7 7.2 41 222-262 168-212 (653)
61 PRK13320 pantothenate kinase; 58.8 65 0.0014 31.5 9.1 17 97-113 4-20 (244)
62 TIGR00671 baf pantothenate kin 56.6 66 0.0014 31.4 8.8 43 98-149 2-44 (243)
63 PLN02669 xylulokinase 56.4 28 0.0006 38.1 6.8 28 87-117 3-30 (556)
64 PRK13411 molecular chaperone D 56.1 41 0.00089 37.6 8.1 19 95-113 2-20 (653)
65 TIGR00241 CoA_E_activ CoA-subs 55.7 34 0.00074 33.1 6.6 48 97-159 2-49 (248)
66 COG1069 AraB Ribulose kinase [ 55.6 37 0.00081 37.2 7.4 98 96-199 4-103 (544)
67 PF00012 HSP70: Hsp70 protein; 54.4 25 0.00054 38.1 5.9 53 207-261 150-206 (602)
68 TIGR02350 prok_dnaK chaperone 50.0 30 0.00065 38.0 5.8 17 97-113 2-18 (595)
69 TIGR00904 mreB cell shape dete 49.9 2.1E+02 0.0044 28.8 11.4 45 208-254 114-158 (333)
70 TIGR01991 HscA Fe-S protein as 46.2 42 0.00091 37.1 6.2 16 98-113 2-17 (599)
71 PRK03657 hypothetical protein; 45.6 71 0.0015 29.9 6.7 69 46-116 69-145 (170)
72 smart00842 FtsA Cell division 44.1 98 0.0021 28.5 7.5 58 97-158 1-59 (187)
73 PRK13322 pantothenate kinase; 39.5 78 0.0017 31.0 6.3 45 197-243 51-96 (246)
74 PRK01433 hscA chaperone protei 36.9 82 0.0018 34.9 6.6 141 97-254 21-201 (595)
75 TIGR02707 butyr_kinase butyrat 35.7 75 0.0016 32.9 5.7 56 97-160 2-61 (351)
76 PRK13929 rod-share determining 35.3 4.8E+02 0.011 26.3 12.2 43 210-254 116-158 (335)
77 KOG3127 Deoxycytidylate deamin 34.5 24 0.00051 34.5 1.7 22 232-253 73-94 (230)
78 PF05402 PqqD: Coenzyme PQQ sy 31.8 1.1E+02 0.0024 23.1 4.9 34 35-68 30-63 (68)
79 COG3734 DgoK 2-keto-3-deoxy-ga 31.7 39 0.00084 34.4 2.8 23 94-116 4-26 (306)
80 PF11104 PilM_2: Type IV pilus 31.2 1.8E+02 0.0038 29.5 7.6 61 99-161 1-61 (340)
81 PF11215 DUF3010: Protein of u 31.1 1.1E+02 0.0024 27.8 5.3 61 97-161 3-63 (138)
82 TIGR02529 EutJ ethanolamine ut 31.0 3.2E+02 0.007 26.4 9.0 27 209-237 78-104 (239)
83 PRK13411 molecular chaperone D 30.9 1.3E+02 0.0028 33.8 7.0 23 94-116 185-207 (653)
84 PF00012 HSP70: Hsp70 protein; 30.7 1E+02 0.0022 33.3 6.1 24 93-116 186-209 (602)
85 PF14574 DUF4445: Domain of un 30.1 85 0.0019 33.4 5.2 18 98-115 4-21 (412)
86 TIGR03706 exo_poly_only exopol 29.9 1.8E+02 0.0038 29.1 7.2 62 97-158 2-65 (300)
87 COG4071 Uncharacterized protei 29.9 73 0.0016 31.2 4.2 51 206-257 144-197 (278)
88 TIGR03123 one_C_unchar_1 proba 29.6 38 0.00083 34.7 2.4 20 94-113 127-146 (318)
89 PF02419 PsbL: PsbL protein; 29.5 56 0.0012 23.1 2.4 29 306-334 2-30 (37)
90 PRK10854 exopolyphosphatase; P 28.2 2.6E+02 0.0057 30.3 8.6 62 96-157 12-75 (513)
91 PRK00753 psbL photosystem II r 26.7 79 0.0017 22.5 2.8 29 306-334 4-32 (39)
92 TIGR02350 prok_dnaK chaperone 25.1 1.9E+02 0.0041 31.8 6.9 23 94-116 182-204 (595)
93 PTZ00186 heat shock 70 kDa pre 24.4 1.8E+02 0.0039 32.8 6.7 22 95-116 212-233 (657)
94 PRK13410 molecular chaperone D 24.0 1.7E+02 0.0036 33.0 6.3 23 94-116 186-208 (668)
95 PRK10753 transcriptional regul 23.9 1.8E+02 0.0039 23.9 5.1 35 39-73 5-39 (90)
96 CHL00094 dnaK heat shock prote 23.7 1.6E+02 0.0035 32.6 6.2 22 95-116 187-208 (621)
97 PF13941 MutL: MutL protein 23.2 96 0.0021 33.5 4.1 54 96-156 1-54 (457)
98 PF01968 Hydantoinase_A: Hydan 23.1 74 0.0016 31.8 3.1 18 96-113 78-95 (290)
99 PRK00290 dnaK molecular chaper 22.8 1.9E+02 0.0042 32.0 6.5 22 95-116 185-206 (627)
100 CHL00038 psbL photosystem II p 22.7 91 0.002 22.1 2.5 30 306-335 3-32 (38)
101 PRK11677 hypothetical protein; 22.5 2.4E+02 0.0052 25.5 5.8 18 9-26 6-23 (134)
102 TIGR00987 himA integration hos 22.4 2E+02 0.0043 23.8 5.1 36 38-73 5-40 (96)
103 PRK11031 guanosine pentaphosph 22.3 2.6E+02 0.0057 30.2 7.3 62 96-157 7-70 (496)
104 PF06295 DUF1043: Protein of u 22.2 2.8E+02 0.006 24.5 6.2 20 10-29 3-22 (128)
105 COG0443 DnaK Molecular chapero 22.1 1.5E+02 0.0032 32.9 5.4 23 93-115 170-192 (579)
106 COG1546 CinA Uncharacterized p 22.0 3.4E+02 0.0075 25.3 6.9 69 47-117 64-140 (162)
107 TIGR00555 panK_eukar pantothen 21.5 1.8E+02 0.0039 29.3 5.4 17 97-113 2-18 (279)
108 PRK00285 ihfA integration host 21.4 2.1E+02 0.0046 23.7 5.1 36 38-73 6-41 (99)
109 PF09907 DUF2136: Uncharacteri 21.4 1E+02 0.0022 25.1 3.0 21 95-115 36-57 (76)
110 COG0443 DnaK Molecular chapero 21.3 3.7E+02 0.0081 29.8 8.3 50 212-263 140-191 (579)
111 PRK03661 hypothetical protein; 20.6 3.3E+02 0.0071 25.2 6.5 58 46-104 63-128 (164)
112 KOG0104 Molecular chaperones G 20.4 1.7E+02 0.0038 33.6 5.4 54 97-151 24-77 (902)
113 TIGR00199 cinA_cterm competenc 20.3 3.7E+02 0.0079 24.3 6.7 56 46-102 51-114 (146)
114 smart00411 BHL bacterial (prok 20.2 2.4E+02 0.0053 22.5 5.1 35 38-72 4-38 (90)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=1.6e-120 Score=951.94 Aligned_cols=403 Identities=85% Similarity=1.293 Sum_probs=381.4
Q ss_pred CCceeeeeeehhhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Q 014432 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (424)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~M 80 (424)
|+|+.++++++|+|++|+++++.++++++++.+|.++.+++++++++|.+|.++|++|+++|.+||++||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (497)
T PLN02405 1 MGKVAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (497)
T ss_pred CCceeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Confidence 89999999999999989999888888888778888999999999999999999999999999999999999876689999
Q ss_pred eecccccCCCCcccccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCC
Q 014432 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (424)
Q Consensus 81 LPSyv~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~ 160 (424)
|||||+++|+|+|+|+|||||||||||||++|+|.|++.....+.+++++||+++|.+++++||||||+||++|+++++.
T Consensus 81 lpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~ 160 (497)
T PLN02405 81 LISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGE 160 (497)
T ss_pred eccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999876666677778999999999999999999999999999998865
Q ss_pred CCCCCCCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccc
Q 014432 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (424)
Q Consensus 161 ~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay 240 (424)
+....+++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|+|++|+|+||||||||||+|++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 161 DFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred ccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 43223346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeeccc
Q 014432 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (424)
Q Consensus 241 ~~~~~~IGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG 320 (424)
.+|+|.||+|+|||||+||+|++++||||++..+..++||||||||+||.+++|+|+||..+|++|.|||+|+|||||||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (497)
T PLN02405 241 YNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKIISG 320 (497)
T ss_pred CCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHHhh
Confidence 99999999999999999999999999999875556788999999999998889999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccCcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhhe
Q 014432 321 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCWH 400 (424)
Q Consensus 321 ~YLGElvRliLl~l~~~~~LF~~~~~~~l~~~~~~~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~~ 400 (424)
||||||+|+||++|++++.||++..|++|.+||+|+|++||.|+.|++++++.++++|++.|++++++.+|+..++++|+
T Consensus 321 ~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i~~ 400 (497)
T PLN02405 321 MYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVELCN 400 (497)
T ss_pred ccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred ecc
Q 014432 401 FIS 403 (424)
Q Consensus 401 ~vs 403 (424)
+|+
T Consensus 401 ~V~ 403 (497)
T PLN02405 401 IVA 403 (497)
T ss_pred HHH
Confidence 997
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=8.5e-119 Score=936.87 Aligned_cols=401 Identities=52% Similarity=0.866 Sum_probs=377.0
Q ss_pred CCceeeeeeehhhHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 014432 1 MGKVTVAATVVCAAAVCAAAALVVRRRM-KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (424)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 79 (424)
|+|+.++++++|++++|++| +.+++|. +.+.+|+++++.+++|+++|.+|.++|++|+++|.+||++||+.+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 89999999999999999888 6777776 666799999999999999999999999999999999999999886668999
Q ss_pred eeecccccCCCCcccccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcC
Q 014432 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 80 MLPSyv~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
||||||+++|+|+|+|+|||||||||||||++|+|.|++..+.++.+++|+||++++.+++++||||||+||++|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999987655566667789999999999999999999999999999876
Q ss_pred CCCCCCCCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccc
Q 014432 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (424)
Q Consensus 160 ~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~a 239 (424)
.+...++++.+||||||||||+|+++++|+|++| |||++++++|+||+++|++|++|+|++|+|+||||||||||+|++
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~a 239 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGR 239 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhh
Confidence 5432223457999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeecc
Q 014432 240 YHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIIS 319 (424)
Q Consensus 240 y~~~~~~IGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiS 319 (424)
|.+|+|.||+|+|||||+||+|++++|+|+++..+..++||||||||+||...+|+|+||+.||++|.|||+|+||||||
T Consensus 240 Y~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiS 319 (490)
T PLN02596 240 YYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTS 319 (490)
T ss_pred cCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHh
Confidence 99999999999999999999999999999987655678999999999998777999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccCcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhh
Q 014432 320 GMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCW 399 (424)
Q Consensus 320 G~YLGElvRliLl~l~~~~~LF~~~~~~~l~~~~~~~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~ 399 (424)
|||||||+|+||++|++++.||++..|++|.+||+|+|++||.|+.|++++++.++++|++.|++++++.+|+..++++|
T Consensus 320 G~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~i~ 399 (490)
T PLN02596 320 GMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEVC 399 (490)
T ss_pred hhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred eecc
Q 014432 400 HFIS 403 (424)
Q Consensus 400 ~~vs 403 (424)
++|+
T Consensus 400 ~~V~ 403 (490)
T PLN02596 400 DIVA 403 (490)
T ss_pred HHHH
Confidence 9997
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=9.3e-119 Score=940.94 Aligned_cols=402 Identities=60% Similarity=0.955 Sum_probs=378.0
Q ss_pred CCceeeeeeehhhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Q 014432 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (424)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~M 80 (424)
|+|+.++++++|++++|++++..++++++...+|+++++++++|+++|.+|.++|++|+++|++||++||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (509)
T PLN02362 1 MGKVAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKM 80 (509)
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 89999999999998889899888888888777888999999999999999999999999999999999999865689999
Q ss_pred eecccccCCCCcccccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCC
Q 014432 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (424)
Q Consensus 81 LPSyv~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~ 160 (424)
|||||+++|+|+|+|+|||||||||||||++|+|.|++.....+++++|+||+++|.+++++||||||+||++|+++++.
T Consensus 81 lPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~ 160 (509)
T PLN02362 81 LLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEEN 160 (509)
T ss_pred ecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999877666556667899999999999999999999999999998865
Q ss_pred CCCCCCCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccc
Q 014432 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (424)
Q Consensus 161 ~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay 240 (424)
..+.+..+.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|+|++|+|+||||||||||+|++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 161 GSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred cccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 43222235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeeccc
Q 014432 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (424)
Q Consensus 241 ~~~~~~IGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG 320 (424)
.+|+|.||+|+|||||+||+|++++|+|+++..+..++||||||||+||.+++|+|+||..+|++|.|||+|+|||||||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (509)
T PLN02362 241 HDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISG 320 (509)
T ss_pred CCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHHhh
Confidence 99999999999999999999999999999875556778999999999998889999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccCcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhhe
Q 014432 321 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCWH 400 (424)
Q Consensus 321 ~YLGElvRliLl~l~~~~~LF~~~~~~~l~~~~~~~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~~ 400 (424)
||||||+|+||++|++++.||++ .|++|.+||+|+|++||.|+.|++++++.++++|++.||++.++.+|+..++++|+
T Consensus 321 ~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i~~ 399 (509)
T PLN02362 321 MYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKICD 399 (509)
T ss_pred ccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999975 78899999999999999999999999999999999999998888999999999999
Q ss_pred ecc
Q 014432 401 FIS 403 (424)
Q Consensus 401 ~vs 403 (424)
+|+
T Consensus 400 ~V~ 402 (509)
T PLN02362 400 VVT 402 (509)
T ss_pred HHH
Confidence 997
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=1e-113 Score=898.62 Aligned_cols=366 Identities=61% Similarity=1.001 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCcceeecccccCCCCcccccEEEEEcCCceeEEEEEEEc
Q 014432 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLG 115 (424)
Q Consensus 36 ~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MLPSyv~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~ 115 (424)
++.+.+++|+++|.+|.++|++|+++|.+||++||+++++|+++||||||+++|+|+|+|+|||||||||||||++|+|.
T Consensus 36 ~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~ 115 (490)
T PLN02914 36 SVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLG 115 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEEec
Confidence 78889999999999999999999999999999999986568999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeeeeeeeeccCCceEEEeccc
Q 014432 116 GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTK 195 (424)
Q Consensus 116 g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~wtK 195 (424)
|++..+..+.+++|+||++++.+++++||||||+||++|+++++.+.+.+.++.+||||||||||+|+++++|+|++|||
T Consensus 116 g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTK 195 (490)
T PLN02914 116 GKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTK 195 (490)
T ss_pred CCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEecc
Confidence 87665666677899999999999999999999999999999876433222346799999999999999999999999999
Q ss_pred ceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccccCCCceEEEEeccceeeeeecccCCCCcccCCCCC
Q 014432 196 GFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPK 275 (424)
Q Consensus 196 gF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~~~~~IGlIlGTGtNacY~E~~~~I~k~~~~~~~ 275 (424)
||++++++|+||+++|++||+|++++|+|+||||||||||+|++|.+|+|.||+|+|||||+||+|++++|||+++..+.
T Consensus 196 GF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~ 275 (490)
T PLN02914 196 GFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSS 275 (490)
T ss_pred ccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875555
Q ss_pred CCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeecccccHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcc
Q 014432 276 SGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFIL 355 (424)
Q Consensus 276 ~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGElvRliLl~l~~~~~LF~~~~~~~l~~~~~~ 355 (424)
.++|+||||||+|| +.+|+|+||+.+|++|.|||+|+|||||||||||||+|+||++|++++.||++..|++|.+||+|
T Consensus 276 ~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l 354 (490)
T PLN02914 276 SGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFAL 354 (490)
T ss_pred CceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCcc
Confidence 77899999999996 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhheecc
Q 014432 356 RTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCWHFIS 403 (424)
Q Consensus 356 ~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~~~vs 403 (424)
+|++||+|+.|+++++..++++|++.|++. ++.+|+..++++|++|+
T Consensus 355 ~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~-~~~~d~~~vr~i~~~V~ 401 (490)
T PLN02914 355 RTPHLCAMQQDNSDDLQAVGSILYDVLGVE-ASLSARRRVVEVCDTIV 401 (490)
T ss_pred ccHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999994 68899999999999987
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-105 Score=826.08 Aligned_cols=367 Identities=46% Similarity=0.685 Sum_probs=342.0
Q ss_pred ccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCC-CCcceeecccccCCCCcccccEEEEEcCCcee
Q 014432 29 KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-SKLKMLISYVDNLPTGDEKGLFYALDLGGTNF 107 (424)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~-s~l~MLPSyv~~lP~G~E~G~fLAlDlGGTNl 107 (424)
..+.+++.+.++++++++.|.+|.++|++|+++|++||++||+.... +.++|+||||.++|+|+|+|+|||||||||||
T Consensus 19 ~~~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~ 98 (474)
T KOG1369|consen 19 AVASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNF 98 (474)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCce
Confidence 33467888999999999999999999999999999999999995443 33999999999999999999999999999999
Q ss_pred EEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeeeeeeeeccCCc
Q 014432 108 RVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIAS 187 (424)
Q Consensus 108 RV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~ 187 (424)
||++|+|.|++. ...+.+++|+||+++|++++++||||||+|+++|+++++... ..++||||||||||+|+++++
T Consensus 99 Rv~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~----~~~l~lgFTFSfP~~Q~si~~ 173 (474)
T KOG1369|consen 99 RVLLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG----ASKLPLGFTFSFPCRQTSIDK 173 (474)
T ss_pred EEEEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc----ccccccceEEeeeeeeccccc
Confidence 999999988876 566777899999999999999999999999999999988652 122999999999999999999
Q ss_pred eEEEecccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEecchHhhhcccccCCCceEEEEeccceeeeeecccCCC
Q 014432 188 GDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAI 266 (424)
Q Consensus 188 g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~-v~v~aivNDTVaTLla~ay~~~~~~IGlIlGTGtNacY~E~~~~I 266 (424)
|+|++|||||++++++|+||+++|++||+|+|++ +.|+|++|||||||++|+|.+|+|.||+|+|||||+||+|+.++|
T Consensus 174 g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i 253 (474)
T KOG1369|consen 174 GTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNI 253 (474)
T ss_pred ceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccch
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCcEEEEeccCCcCCC--CCCCCccchhhcccCCCCCcceeeeecccccHHHHHHHHHHHHhhhcCCCCCC
Q 014432 267 PKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDT 344 (424)
Q Consensus 267 ~k~~~~~~~~~~miINtEwG~Fg~~--~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGElvRliLl~l~~~~~LF~~~ 344 (424)
||+++..... +||||||||+||++ .+|+|+||..+|++|+|||+|.||||+||||||||||++|+++.+++.||++.
T Consensus 254 ~k~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~ 332 (474)
T KOG1369|consen 254 EKVEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQ 332 (474)
T ss_pred hhcccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhccc
Confidence 9999864433 89999999999944 58999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCccCcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhheecch
Q 014432 345 VPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCWHFISC 404 (424)
Q Consensus 345 ~~~~l~~~~~~~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~~~vs~ 404 (424)
. .+| +|+.|+|+++|+|++|++++++.+.. +.+.||+..++.+|+..++++|+.|+-
T Consensus 333 ~-~~l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~ 389 (474)
T KOG1369|consen 333 S-TKL-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSR 389 (474)
T ss_pred c-ccc-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHH
Confidence 7 677 99999999999999999999999999 777799999999999999999999873
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=5e-103 Score=816.02 Aligned_cols=350 Identities=36% Similarity=0.552 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC---------CCCCcceeecccccCCCCcccccEEEEEcCCc
Q 014432 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE---------GGSKLKMLISYVDNLPTGDEKGLFYALDLGGT 105 (424)
Q Consensus 35 ~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~---------~~s~l~MLPSyv~~lP~G~E~G~fLAlDlGGT 105 (424)
.+.++.+++++++|.++.++|++|+++|++||++||+++ ++|+++||||||+++|+|+|+|+|||||||||
T Consensus 5 ~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGT 84 (464)
T PTZ00107 5 IKQRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGT 84 (464)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCc
Confidence 345667888889999999999999999999999999875 25899999999999999999999999999999
Q ss_pred eeEEEEEEEcCCcceeEEEEeeeeccCcccccc---------CchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeee
Q 014432 106 NFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG---------SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (424)
Q Consensus 106 NlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~---------~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 176 (424)
||||++|+|.|++.. ...+++|.||++++.+ ++++||||||+||.+|+++++... ...+.+||||||
T Consensus 85 N~RV~~V~L~g~~~~--~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTF 160 (464)
T PTZ00107 85 NFRAVRVSLRGGGKM--ERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTF 160 (464)
T ss_pred eEEEEEEEeCCCCce--eeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEE
Confidence 999999999887543 3344689999999998 899999999999999999876321 123579999999
Q ss_pred eeeeeeccCCceEEEecccceec-----CCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccccC----CCceE
Q 014432 177 SFPVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIA 247 (424)
Q Consensus 177 SFP~~Q~si~~g~Li~wtKgF~~-----~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~----~~~~I 247 (424)
||||+|+++++|+|++|||||++ ++++|+||+++|++||+|++++|+|+||||||||||+|++|.+ |+|.|
T Consensus 161 SFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~i 240 (464)
T PTZ00107 161 SFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQV 240 (464)
T ss_pred eeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceE
Confidence 99999999999999999999999 8999999999999999999999999999999999999999999 99999
Q ss_pred EEEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCcceeeeecccccHHHHH
Q 014432 248 AVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIV 327 (424)
Q Consensus 248 GlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGElv 327 (424)
|+|+|||||+||+|+.... +....||||||||+|| +.+|+|+||..+|+.|.|||+|+|||||||||||||+
T Consensus 241 GlIlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~-~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~ 312 (464)
T PTZ00107 241 GVIIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFD-SKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEIS 312 (464)
T ss_pred EEEEeccccceeeehhhcc-------CCCCcEEEEeeccccC-CCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHH
Confidence 9999999999999965332 2345799999999996 4599999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCccCcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhheecc
Q 014432 328 RRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCWHFIS 403 (424)
Q Consensus 328 RliLl~l~~~~~LF~~~~~~~l~~~~~~~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~~~vs 403 (424)
|+||++|++++ .|++|.++|+|+|+++|.|+.|++++++.++++|.+.+++. .+.+|+..++.+|++|+
T Consensus 313 Rlvl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~ 381 (464)
T PTZ00107 313 RRLIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVR 381 (464)
T ss_pred HHHHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHH
Confidence 99999998865 47789999999999999999999999999999999999985 56799999999999987
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-92 Score=716.46 Aligned_cols=366 Identities=39% Similarity=0.618 Sum_probs=341.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCcceeecccccCCCCcccccEEEEEcCCceeEEEE
Q 014432 32 GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLR 111 (424)
Q Consensus 32 ~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MLPSyv~~lP~G~E~G~fLAlDlGGTNlRV~~ 111 (424)
..|+.+++.+.++++.|.+|.|+|.+++++|.+||++||+...+..++|+|+||...|+|+|.|.|||||+||||||||+
T Consensus 12 ~~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~ 91 (466)
T COG5026 12 GVEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCL 91 (466)
T ss_pred cccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEE
Confidence 35788999999999999999999999999999999999995444449999999999999999999999999999999999
Q ss_pred EEEcCCcceeEEEEeeeeccCcccccc-CchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeeeeeeeeccCCceEE
Q 014432 112 VQLGGREGRVVKQEFEEVSIPPHLMTG-SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDL 190 (424)
Q Consensus 112 V~L~g~~~~~~~~~~~~~~ip~~~~~~-~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~L 190 (424)
|+|.|++...+.+. ++.+|.+..+. +.++||+|||++++.|+++++... ..+++|+|||||||++|+++++|.|
T Consensus 92 V~l~g~gt~~~~~s--ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l 166 (466)
T COG5026 92 VVLGGDGTFDIEQS--KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQL 166 (466)
T ss_pred EEeCCCCCcccccC--cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceee
Confidence 99999988766544 45599999877 899999999999999999988643 2468999999999999999999999
Q ss_pred EecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccccCCCceEEEEeccceeeeeecccCCCCccc
Q 014432 191 IKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWH 270 (424)
Q Consensus 191 i~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~~~~~IGlIlGTGtNacY~E~~~~I~k~~ 270 (424)
++|||||++++++|+||+++|+++|+++++|++|+||+|||||||||+.|.++++.||+|+|||||+||+|+.++|||++
T Consensus 167 ~rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~ 246 (466)
T COG5026 167 IRWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLP 246 (466)
T ss_pred EeecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCcEEEEeccCCcCCCC--CCCCccchhhcccCCCCCcceeeeecccccHHHHHHHHHHHHhhhcCCCCCCCCC
Q 014432 271 GL-LPKSGEMVINMEWGNFRSSH--LPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPP 347 (424)
Q Consensus 271 ~~-~~~~~~miINtEwG~Fg~~~--lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGElvRliLl~l~~~~~LF~~~~~~ 347 (424)
.+ .+...+|+||+|||+|++.. +|+|.||..+|++|++||.|.||||+||+|||||+|++|+++.++|.+|.+..|+
T Consensus 247 ~d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~ 326 (466)
T COG5026 247 RDDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPE 326 (466)
T ss_pred cccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchh
Confidence 53 45678899999999998655 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhheecc
Q 014432 348 KLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCWHFIS 403 (424)
Q Consensus 348 ~l~~~~~~~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~~~vs 403 (424)
++..|+.++|+.+|.|+.|++++++.+...+.+.|++ +++.+++..++.++++|.
T Consensus 327 ~~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~-~tt~eer~lI~~l~~~i~ 381 (466)
T COG5026 327 KLTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRA-PTTKEERKLIRRLVELIG 381 (466)
T ss_pred hcccceeeecchhhhhccccccccchhHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 677788888888888764
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=1.4e-62 Score=464.84 Aligned_cols=202 Identities=48% Similarity=0.745 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCC--CCcceeecccccCCCCcccccEEEEEcCCceeEEEEEE
Q 014432 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 36 ~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~--s~l~MLPSyv~~lP~G~E~G~fLAlDlGGTNlRV~~V~ 113 (424)
+.++.++++.+.|.+|.++|++|+++|++||++||+++.. ++++||||||+++|+|+|+|+|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 5678899999999999999999999999999999997653 24999999999999999999999999999999999999
Q ss_pred EcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeeeeeeeeccCCceEEEec
Q 014432 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (424)
Q Consensus 114 L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~w 193 (424)
|.|++.. ...+++|+||++++.+++++||||||+||++|+++++.. +.++++||||||||||+|+++++|+|++|
T Consensus 82 L~g~~~~--~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGKV--EIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSEE--EEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCCc--eeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 9888743 334568999999999999999999999999999988753 23578999999999999999999999999
Q ss_pred ccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEecchHhhhcccccC
Q 014432 194 TKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHN 242 (424)
Q Consensus 194 tKgF~~~~v~G~Dv~~lL~~al~r~~l~-v~v~aivNDTVaTLla~ay~~ 242 (424)
||||++++++|+|++++|++||+|++++ |+|+||+|||||||||++|.|
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999998 999999999999999999975
No 9
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=1.9e-46 Score=362.60 Aligned_cols=157 Identities=44% Similarity=0.726 Sum_probs=141.0
Q ss_pred CceEEEEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCC--CCCCCccchhhcccCCCCCcceeeeecccc
Q 014432 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGM 321 (424)
Q Consensus 244 ~~~IGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~--~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~ 321 (424)
+|+||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.+|+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999998 57789999999999653 279999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccCcchhchhccCCCcCHHHHHHHHHHHhCCCCCChHHHHhhhhhhee
Q 014432 322 YLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEVLYPVDTVGEQLVLCWHF 401 (424)
Q Consensus 322 YLGElvRliLl~l~~~~~LF~~~~~~~l~~~~~~~t~~ls~ie~d~s~~~~~~~~il~~~l~i~~~~~~~~~~~~~~~~~ 401 (424)
|||||+|++|+++++++.||++..|+.|.+||+|+|+++|.|++|+++++..++.+|.+.++++ ++.+|+..++.+|++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999995 678999999999999
Q ss_pred cch
Q 014432 402 ISC 404 (424)
Q Consensus 402 vs~ 404 (424)
|+.
T Consensus 157 V~~ 159 (243)
T PF03727_consen 157 VST 159 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 10
>PRK09698 D-allose kinase; Provisional
Probab=98.49 E-value=3.9e-06 Score=83.07 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=103.7
Q ss_pred cccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeee
Q 014432 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LG 173 (424)
.+.++++|+|||++|++++.+.|. +... ..++.|.. .+. +.++.+++.|.+++++.+. +-.-+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~-~~~~~l~~~i~~~~~~~~~-------~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAP-DLVSGLGEMIDEYLRRFNA-------RCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cch-HHHHHHHHHHHHHHHHcCC-------CeeEEE
Confidence 456899999999999999998764 2222 23444432 123 3499999999999987531 224455
Q ss_pred eeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccccc---CCCceEEEE
Q 014432 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (424)
Q Consensus 174 fTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~---~~~~~IGlI 250 (424)
+.+.-|++. +.|.++. +..+..++..+.++.+.|++++ ++| +.+.||..+..++-.+. +++..+.+-
T Consensus 67 ia~pG~vd~---~~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSK---DRRTVIS-TPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeC---CCCEEEe-cCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 555556654 3444443 3334333456678888887664 444 68999999877654332 446788999
Q ss_pred eccceeeeeecccCCCCcccCCCCCCCcEEEE
Q 014432 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (424)
Q Consensus 251 lGTGtNacY~E~~~~I~k~~~~~~~~~~miIN 282 (424)
+|||.-++++.+=.-+.-..+...+-++|.++
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~ 168 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLG 168 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEee
Confidence 99999999987533222222211234567665
No 11
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.28 E-value=3e-05 Score=75.36 Aligned_cols=137 Identities=15% Similarity=0.256 Sum_probs=90.9
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeee
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 176 (424)
||++|+|||++|++++.+.|+ +... ++++.|. .+.+++.+.+.+.+.++..... ...|..+
T Consensus 2 ~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~----------~~~gIgv 62 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG----------VQGSVGI 62 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC----------CCceEEE
Confidence 799999999999999998763 2222 2455553 2456788888888877743221 1235555
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccccc----CCCceEEEEec
Q 014432 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (424)
Q Consensus 177 SFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~----~~~~~IGlIlG 252 (424)
+.|=-- ..+.|.+ .++ ..++-.+.++.+.|++.+ ++| +.+-||+-+.-++-.+. +.+..+.+.+|
T Consensus 63 ~~pG~v-d~~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lg 131 (256)
T PRK13311 63 GIPGLP-NADDGTV-FTA---NVPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILG 131 (256)
T ss_pred EecCcE-ECCCCEE-Ecc---CCCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEEC
Confidence 665322 1134544 343 223334678888887765 444 67999998877766553 45788999999
Q ss_pred cceeeeeeccc
Q 014432 253 TGTNAAYVERA 263 (424)
Q Consensus 253 TGtNacY~E~~ 263 (424)
||.-++.+-.-
T Consensus 132 tGiG~giv~~G 142 (256)
T PRK13311 132 TGVGGGLIVNG 142 (256)
T ss_pred cCeEEEEEECC
Confidence 99999998763
No 12
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.12 E-value=9.2e-05 Score=73.63 Aligned_cols=136 Identities=18% Similarity=0.298 Sum_probs=91.3
Q ss_pred EEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeee
Q 014432 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFS 177 (424)
|++|+|||++|++++++.|. +... ..++.+ .+.+++++.|.+.|.+|+++.+... . -.+|+.++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~----~--~i~gIgva 64 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSK--WKVPTD-----TTPETIVDAIASAVDSFIQHIAKVG----H--EIVAIGIG 64 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEE--EEeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc----c--ceEEEEEe
Confidence 58999999999999998763 2222 233333 1457899999999999998765321 1 23555566
Q ss_pred ee--eeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccc----cCCCceEEEEe
Q 014432 178 FP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVIL 251 (424)
Q Consensus 178 FP--~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay----~~~~~~IGlIl 251 (424)
.| ++. .+|.+ .|+-.+.+ .+.|+.+.|++.+ ++| +.+.||+-+..++-.+ .+.+..+.+.+
T Consensus 65 ~pG~vd~---~~g~~-~~~~~~~w---~~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~i 131 (318)
T TIGR00744 65 APGPVNR---QRGTV-YFAVNLDW---KQEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITL 131 (318)
T ss_pred ccccccC---CCCEE-EecCCCCC---CCCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEe
Confidence 65 543 34553 33322322 3457777776544 444 6799999988765443 35678899999
Q ss_pred ccceeeeeecc
Q 014432 252 GTGTNAAYVER 262 (424)
Q Consensus 252 GTGtNacY~E~ 262 (424)
|||..++++..
T Consensus 132 gtGiG~giv~~ 142 (318)
T TIGR00744 132 GTGLGGGIIIN 142 (318)
T ss_pred CCccEEEEEEC
Confidence 99999999865
No 13
>PRK12408 glucokinase; Provisional
Probab=98.12 E-value=3.3e-05 Score=78.48 Aligned_cols=192 Identities=19% Similarity=0.165 Sum_probs=106.5
Q ss_pred CCccccc-EEEEEcCCceeEEEEEEEcCCc---ceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCC
Q 014432 90 TGDEKGL-FYALDLGGTNFRVLRVQLGGRE---GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVS 165 (424)
Q Consensus 90 ~G~E~G~-fLAlDlGGTNlRV~~V~L~g~~---~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~ 165 (424)
++-|++. ||++|+||||.|+++|+-++.. .... ..++++-+ ..+.+.+. +.+|+++ ..
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~--~~~~~~t~------~~~~~~~~----i~~~~~~-~~----- 71 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELL--DYRTYRCA------DYPSLAAI----LADFLAE-CA----- 71 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCcccccccc--ceeEecCC------CccCHHHH----HHHHHhc-CC-----
Confidence 4556664 9999999999999999754431 0111 11223222 12334333 4566654 11
Q ss_pred CCceeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccccc----
Q 014432 166 PGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---- 241 (424)
Q Consensus 166 ~~~~l~LGfTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~---- 241 (424)
+ +.|..+++|=- . .++|++. .+ ...+. .+. +.|+++ +.+..+.+.||.-+.-++-.+.
T Consensus 72 --~--~~~igIg~pG~-~-~~~g~v~-~~-nl~w~-----~~~----~~l~~~-~~~~~V~l~ND~naaa~gE~~~~~~~ 133 (336)
T PRK12408 72 --P--VRRGVIASAGY-A-LDDGRVI-TA-NLPWT-----LSP----EQIRAQ-LGLQAVHLVNDFEAVAYAAPYMEGNQ 133 (336)
T ss_pred --C--cCEEEEEecCC-c-eECCEEE-ec-CCCCc-----cCH----HHHHHH-cCCCeEEEeecHHHHHcccccCCHhH
Confidence 1 34555555543 1 3356665 22 11111 122 334333 3455589999999999987665
Q ss_pred ---------CC-CceEEEEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhh-cccCCCCC
Q 014432 242 ---------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPG 310 (424)
Q Consensus 242 ---------~~-~~~IGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~l-D~~S~nPG 310 (424)
+. ...+.+.+|||..++.+.+-. .+....=.|+|... ..|.++....+ .......|
T Consensus 134 ~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~GH~~--~~~~~~~~~~l~~~~~~~~~ 200 (336)
T PRK12408 134 VLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEAGQAA--LAAASELEMQLLQHLLRTRT 200 (336)
T ss_pred eeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCcccccc--CCCCCHHHHHHHHHHHhhCC
Confidence 22 467888899999999986532 12344567777642 11222111110 01112233
Q ss_pred cceeeeecccccHHHHHHHH
Q 014432 311 EQIFEKIISGMYLGEIVRRV 330 (424)
Q Consensus 311 ~q~fEKmiSG~YLGElvRli 330 (424)
.-.+|...||.-|..+.|..
T Consensus 201 ~~~~E~~~Sg~gL~~~~~~~ 220 (336)
T PRK12408 201 HVPIEHVLSGPGLLNLYRAL 220 (336)
T ss_pred ceeHhheecHHHHHHHHHHH
Confidence 34689999999998877655
No 14
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.09 E-value=9.5e-05 Score=73.32 Aligned_cols=137 Identities=20% Similarity=0.292 Sum_probs=92.6
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeee
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 176 (424)
++++|+|||++|++++.+.|+ +... ..++.|. .+.+++.+.|++.+.++...... ...+|+.+
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~--------~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWE--ERVPTPR----DSYDAFLDAVCELVAEADQRFGC--------KGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcCC--------cceEEEeC
Confidence 689999999999999998663 2222 2344442 24678888888888887644321 12467777
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccccc----CCCceEEEEec
Q 014432 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (424)
Q Consensus 177 SFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~----~~~~~IGlIlG 252 (424)
.=|++. +.|.+. ++ ..++-.+-++.+.|++.+ ++| +.+-||.-+-.++-.+. +.+..+.+.+|
T Consensus 65 pG~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccC---CCCEEe-cc---CcccccCCcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 767754 245443 22 223334567777776654 454 57999998766665443 45788999999
Q ss_pred cceeeeeeccc
Q 014432 253 TGTNAAYVERA 263 (424)
Q Consensus 253 TGtNacY~E~~ 263 (424)
||.-++++..=
T Consensus 132 tGiG~giv~~G 142 (303)
T PRK13310 132 TGVGGGLVFNG 142 (303)
T ss_pred CceEEEEEECC
Confidence 99999998864
No 15
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00014 Score=72.41 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=107.4
Q ss_pred ccccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeee
Q 014432 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (424)
Q Consensus 93 E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~L 172 (424)
+...+++||+|||+++++++.+.|+- . ..+..+.|... ..+++.+-|++.+.++++.+. . ..-.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~---l--~~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEI---L--LRERIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcE---E--EEEEEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 45579999999999999999997742 2 11234444432 125888899999999988764 1 12357
Q ss_pred eeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccccc----CCCceEE
Q 014432 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAA 248 (424)
Q Consensus 173 GfTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~----~~~~~IG 248 (424)
|+-++-|..-..-. .+..+. . .....+-|+.+.|++.+. + ++.|-||+.+.-++-++. +.+..+-
T Consensus 69 GIgi~~pg~~~~~~--~~~~~~-~--~~~~~~~~l~~~L~~~~~---~---Pv~veNDan~aalaE~~~g~~~~~~~~~~ 137 (314)
T COG1940 69 GIGIPGPGDVDNGT--VIVPAP-N--LGWWNGVDLAEELEARLG---L---PVFVENDANAAALAEAWFGAGRGIDDVVY 137 (314)
T ss_pred EEEeccceeccCCc--EEeecC-C--CCccccccHHHHHHHHHC---C---CEEEecHHHHHHHHHHHhCCCCCCCCEEE
Confidence 77777776664322 122211 1 111234567777766644 3 358899999999998885 3578999
Q ss_pred EEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccC
Q 014432 249 VILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG 286 (424)
Q Consensus 249 lIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG 286 (424)
+.+|||.-++++..=+-..-..+...+-++|+++-...
T Consensus 138 i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~ 175 (314)
T COG1940 138 ITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE 175 (314)
T ss_pred EEEccceeEEEEECCEEeecCCCccccccceEECCCCc
Confidence 99999999999986432221111111245677776554
No 16
>PRK09557 fructokinase; Reviewed
Probab=97.95 E-value=0.0003 Score=69.75 Aligned_cols=136 Identities=19% Similarity=0.285 Sum_probs=89.0
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeee
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 176 (424)
+|++|+|||++|++++.+.|+ +... ..++.|. .+.+++.+.|++.+.+++.... ...-+|+.+
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFR--KRLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEecC
Confidence 689999999999999998763 2222 2344442 2456788888888887765432 113355555
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccc----cCCCceEEEEec
Q 014432 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVILG 252 (424)
Q Consensus 177 SFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay----~~~~~~IGlIlG 252 (424)
.=|++. ++|++......+ -.+.++.+.|++.+ ++| +.+.||..+..++-.+ .+++..+-+.+|
T Consensus 65 pG~vd~---~~g~i~~~~~~~----~~~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig 131 (301)
T PRK09557 65 PGSISP---YTGLVKNANSTW----LNGQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG 131 (301)
T ss_pred cccCcC---CCCeEEecCCcc----ccCCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEc
Confidence 555543 345544322211 13567777777765 343 5689999987776544 345777899999
Q ss_pred cceeeeeecc
Q 014432 253 TGTNAAYVER 262 (424)
Q Consensus 253 TGtNacY~E~ 262 (424)
||.-++.+.+
T Consensus 132 tGiG~giv~~ 141 (301)
T PRK09557 132 TGCGAGVAIN 141 (301)
T ss_pred cceEEEEEEC
Confidence 9999999875
No 17
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.84 E-value=0.00035 Score=63.54 Aligned_cols=132 Identities=23% Similarity=0.396 Sum_probs=96.1
Q ss_pred EEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeeee
Q 014432 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (424)
Q Consensus 99 AlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSF 178 (424)
+||+|+|.+|++++.+.|+ ++.. +.+++| .+.+++.+.+.+.+.+++.+... . -+|+.++=
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYS--ESIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEE--EEEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEE--EEEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 5899999999999999774 3333 245665 46689999999999999987752 2 46666666
Q ss_pred eeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccccc----CCCceEEEEeccc
Q 014432 179 PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTG 254 (424)
Q Consensus 179 P~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~----~~~~~IGlIlGTG 254 (424)
|++... |.++.... .+..+.++.+.|++.+ ++ .+.+.||..+..++-.+. +.+..+-+-+|||
T Consensus 62 ~v~~~~---g~i~~~~~----~~~~~~~l~~~l~~~~---~~---pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDSEK---GRIISSPN----PGWENIPLKEELEERF---GV---PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEETTT---TEEEECSS----GTGTTCEHHHHHHHHH---TS---EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcCCC---CeEEecCC----CCcccCCHHHHhhccc---ce---EEEEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 666632 55554433 3445689999888876 23 578999999887766542 4467888899999
Q ss_pred eeeeeecc
Q 014432 255 TNAAYVER 262 (424)
Q Consensus 255 tNacY~E~ 262 (424)
.-++++..
T Consensus 129 iG~~ii~~ 136 (179)
T PF00480_consen 129 IGAGIIIN 136 (179)
T ss_dssp EEEEEEET
T ss_pred CCcceecc
Confidence 99999864
No 18
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.83 E-value=0.00053 Score=67.63 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=90.1
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeee
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 176 (424)
++++|+|||++|++++.+.|+ +.. ...++.|.. .+.+++.+.|++.+.++..+ ...+|+.+
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~--~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQ--RRQIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEE--EEEecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999999764 222 223455432 24567888888888877521 13577777
Q ss_pred eeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccc---cCCCceEEEEecc
Q 014432 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY---HNKDAIAAVILGT 253 (424)
Q Consensus 177 SFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay---~~~~~~IGlIlGT 253 (424)
.-|++. +....+. .....+-.+.|+.+.|++.+ ++| +.+.||+.+..++-.+ .+.+..+-+-+||
T Consensus 64 pG~vd~-----~~~~~~~-~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIIND-----GILTALN-PHNLGGLLHFPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred cccccC-----CeeEEec-CCCCccccCCChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 777752 2221111 11122334678887777553 444 6799999988777543 2556788999999
Q ss_pred ceeeeeeccc
Q 014432 254 GTNAAYVERA 263 (424)
Q Consensus 254 GtNacY~E~~ 263 (424)
|.-++++-.=
T Consensus 132 GiG~giv~~G 141 (291)
T PRK05082 132 GVGGGIVLNG 141 (291)
T ss_pred CcceEEEECC
Confidence 9999998763
No 19
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.76 E-value=0.0002 Score=78.73 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=98.7
Q ss_pred cccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeee
Q 014432 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LG 173 (424)
-|-+|++|+||||.|++++.- ++. +... ++++-+. |+.+.+.|.+|+++.+.. ..-.+|
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~--~g~-i~~~--~~~~t~~----------~~~~~~~i~~~l~~~~~~------~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETG--PGE-ITQI--RVYPGAD----------YPTLTDAIRKYLKDVKIG------RVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecC--CCc-ccce--eEEecCC----------CCCHHHHHHHHHHhcCCC------CcceEE
Confidence 355999999999999999842 222 2211 2333221 245667777777654321 123456
Q ss_pred eeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccc--------c-c---
Q 014432 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR--------Y-H--- 241 (424)
Q Consensus 174 fTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~a--------y-~--- 241 (424)
+..-=|++...+.... +.|. + ++ +.|+ ++ +.+.++.+.||.-+.-++-. + -
T Consensus 76 ig~pGpVd~~~~~~~n-l~w~--~--------~~-~~l~----~~-~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~ 138 (638)
T PRK14101 76 IAIANPVDGDQVRMTN-HDWS--F--------SI-EATR----RA-LGFDTLLVVNDFTALAMALPGLTDAQRVQVGGGT 138 (638)
T ss_pred EEEecCccCCeeeecC-CCcE--e--------cH-HHHH----HH-cCCCeEEEEchHHHHHcCCccCCHHHeEEeCCCC
Confidence 6666666642111111 1231 1 22 3333 33 45667899999999888831 1 1
Q ss_pred CCCceEEEEecc--ceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhh-cccCCCCCcceeeeec
Q 014432 242 NKDAIAAVILGT--GTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPGEQIFEKII 318 (424)
Q Consensus 242 ~~~~~IGlIlGT--GtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~l-D~~S~nPG~q~fEKmi 318 (424)
.....+.+++|| |..+|-+-... .+.++.-+|+|... ..|.++-...+ ..-..+.|.-.+|..+
T Consensus 139 ~~~~~~~~~lGtGTGlG~a~lv~~~-----------g~~~~~g~E~GH~~--~~~~~~~e~~~~~~~~~~~g~~~~E~~~ 205 (638)
T PRK14101 139 RRQNSVIGLLGPGTGLGVSGLIPAD-----------DRWIALGSEGGHAS--FAPQDEREDLVLQYARKKYPHVSFERVC 205 (638)
T ss_pred CCCCCcEEEEECCccceeeEEEecC-----------CeeEECCCCccccC--CCCCCHHHHHHHHHHHHhcCcceeeeec
Confidence 223456788755 56654332211 12234456887653 11222211111 0011123445789999
Q ss_pred ccccHHHHHHHH
Q 014432 319 SGMYLGEIVRRV 330 (424)
Q Consensus 319 SG~YLGElvRli 330 (424)
||.-|..+.|..
T Consensus 206 Sg~gL~~~~~~~ 217 (638)
T PRK14101 206 AGPGMEIIYRAL 217 (638)
T ss_pred chhhHHHHHHHH
Confidence 999998887754
No 20
>PRK00292 glk glucokinase; Provisional
Probab=97.74 E-value=0.00056 Score=68.49 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=96.7
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhh-cCCCCCCCCCceeeeeee
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT-EGEGFHVSPGRQRELGFT 175 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~-~~~~~~~~~~~~l~LGfT 175 (424)
+|++|+||||+|++++++.+. .+.. .+.++.+. ++.+.+.+.+++++ ... +..-+|+.
T Consensus 4 ~lgiDIGgT~i~~~l~~~~~~--~~~~--~~~~~~~~----------~~~~~~~l~~~l~~~~~~-------~~~gigIg 62 (316)
T PRK00292 4 ALVGDIGGTNARFALCDWANG--EIEQ--IKTYATAD----------YPSLEDAIRAYLADEHGV-------QVRSACFA 62 (316)
T ss_pred EEEEEcCccceEEEEEecCCC--ceee--eEEEecCC----------CCCHHHHHHHHHHhccCC-------CCceEEEE
Confidence 799999999999999987442 1121 12344331 12244555666654 211 12234444
Q ss_pred eeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccc------------cC-
Q 014432 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY------------HN- 242 (424)
Q Consensus 176 FSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay------------~~- 242 (424)
..=|++.. + +..+ ...+. . + .+.|++ + +++..+.|.||.-+.-++-.+ .+
T Consensus 63 ~pG~vd~~-----~-i~~~-n~~w~---~-~-~~~l~~----~-~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~ 125 (316)
T PRK00292 63 IAGPVDGD-----E-VRMT-NHHWA---F-S-IAAMKQ----E-LGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPV 125 (316)
T ss_pred EeCcccCC-----E-EEec-CCCcc---c-C-HHHHHH----H-hCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCC
Confidence 44456532 1 1111 11111 1 2 234433 3 345457899999998888653 11
Q ss_pred -CCceEEEEeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhhc-ccCCCCCcceeeeeccc
Q 014432 243 -KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALD-TESLNPGEQIFEKIISG 320 (424)
Q Consensus 243 -~~~~IGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD-~~S~nPG~q~fEKmiSG 320 (424)
.+..+.+-+|||..++.+.+- + .+....-.|+|... ..|..+-...+- .....-|.-.+|..+||
T Consensus 126 ~~~~~~~v~~GTGiG~giv~~g-----~------~g~~g~agE~GH~~--~~~~~~~~~~~~~~~c~~~~~gclE~~~Sg 192 (316)
T PRK00292 126 PGAPIAVIGPGTGLGVAGLVPV-----D------GRWIVLPGEGGHVD--FAPRSEEEAQILQYLRAEFGHVSAERVLSG 192 (316)
T ss_pred CCCcEEEEEcCCcceEEEEEec-----C------CceEEccCCccccc--CCCCChHHHHHHHHHHHhcCCceeEeeecH
Confidence 256788899999999998652 1 12234566766541 012111000000 00111234579999999
Q ss_pred ccHHHHHHH
Q 014432 321 MYLGEIVRR 329 (424)
Q Consensus 321 ~YLGElvRl 329 (424)
.=|.++.|.
T Consensus 193 ~~L~~~~~~ 201 (316)
T PRK00292 193 PGLVNLYRA 201 (316)
T ss_pred HhHHHHHHH
Confidence 988665543
No 21
>PTZ00288 glucokinase 1; Provisional
Probab=97.73 E-value=0.001 Score=69.71 Aligned_cols=223 Identities=19% Similarity=0.193 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhhccCCCCCcceeecccccCCCCcccccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCcccccc
Q 014432 59 ADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG 138 (424)
Q Consensus 59 ~~~f~~em~~GL~~~~~s~l~MLPSyv~~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~ 138 (424)
.+.|.+++.+-|.++.. |- . -+.+|+.|+||||.|+++.++...+....... .++.+ ++..
T Consensus 5 ~~~~~~~~~~~~~~~~~--------~~-~------~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~--~~~~~--~~~~ 65 (405)
T PTZ00288 5 DEIFLEQLAEELKTDAS--------WS-S------GPIFVGCDVGGTNARVGFAREVQHDDSGVHII--YVRFN--VTKT 65 (405)
T ss_pred hHHHHHHHHHHhccCcc--------cc-c------CCeEEEEEecCCceEEEEEeccCCCCCceeEE--EEecc--cccc
Confidence 34566777777766421 11 1 23589999999999999999832211111111 23333 2234
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeeeee--eeeccCCceEEEecccceecCCCCCCcHHHHHHHHHH
Q 014432 139 SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFP--VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAME 216 (424)
Q Consensus 139 ~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP--~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~ 216 (424)
+..++.+++++-+....+....- +....+ +|+.| +..-. -.|...+|.-.+..++. .-.+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a-~iAvAGPV~~~~-~~~~~~~~~~~~~lTNl-pw~i--------- 127 (405)
T PTZ00288 66 DIRELLEFFDEVLQKLKKNLSFI------QRVAAG-AISVPGPVTGGQ-LAGPFNNLKGIARLTDY-PVEL--------- 127 (405)
T ss_pred cHHHHHHHHHHHHHHHHhcCccc------cCcCeE-EEEEeCceeCCE-eeccccccccccccCCC-Cchh---------
Confidence 55678888887777665432110 112223 66655 53211 11344777766666662 1111
Q ss_pred HcCCCceEEEEEecchHhhhcccccC--------------------------------CCceEEEEeccceeeeeecccC
Q 014432 217 RIGLDMRVAALVNDTIGTLAGGRYHN--------------------------------KDAIAAVILGTGTNAAYVERAH 264 (424)
Q Consensus 217 r~~l~v~v~aivNDTVaTLla~ay~~--------------------------------~~~~IGlIlGTGtNacY~E~~~ 264 (424)
++.+-+.++||=.|.=.+....+ ....+.+-.|||..+|++.+..
T Consensus 128 ---~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~ 204 (405)
T PTZ00288 128 ---FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVG 204 (405)
T ss_pred ---cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCe
Confidence 56777899999766544433221 1234788899999999997642
Q ss_pred CCCcccCCCCCCCcEEEEeccCCcCCCCCCCC--ccchhhcccCCC---------CCcceeeeecccccHHHHHHHH
Q 014432 265 AIPKWHGLLPKSGEMVINMEWGNFRSSHLPLT--EYDEALDTESLN---------PGEQIFEKIISGMYLGEIVRRV 330 (424)
Q Consensus 265 ~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T--~~D~~lD~~S~n---------PG~q~fEKmiSG~YLGElvRli 330 (424)
.. .+...+=+|.|...-+.-|.+ ++...+=+.-.. ...-.+|.++||+=|..+.|..
T Consensus 205 l~---------~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l 272 (405)
T PTZ00288 205 VS---------DQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYE 272 (405)
T ss_pred ec---------CCcccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHHH
Confidence 11 233566677776421111222 211211000000 0123789999999998877743
No 22
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=97.27 E-value=0.0026 Score=63.85 Aligned_cols=185 Identities=19% Similarity=0.224 Sum_probs=96.3
Q ss_pred EEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeee
Q 014432 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFS 177 (424)
|++|+||||.|++++.-.+. . .... +. +. + +.++-+.+.|.+|+++...... ...--.|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~--~-l~~~-~~---~~---~----~~~~~l~~~i~~~l~~~~~~~~---~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG--E-ISQA-KT---YS---G----LDFPSLEAVVRVYLEEHKVELK---DPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC--c-eeee-EE---Ee---c----CCCCCHHHHHHHHHHhcccccC---CCcCeEEEEEe
Confidence 68999999999999965332 1 1111 11 11 0 1245555666667665432100 01123677777
Q ss_pred eeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcc--------ccc----CCCc
Q 014432 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RYH----NKDA 245 (424)
Q Consensus 178 FP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~--------ay~----~~~~ 245 (424)
-|++. +.+ ..+ ...+ ..++. .|++ + +.+..+.|.||.-+.-++- .+. ..+.
T Consensus 64 Gpv~~-----~~v-~~~-nl~w----~~~~~-~l~~----~-~g~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITG-----DWV-AMT-NHTW----AFSIA-ELKQ----N-LGFSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccC-----CEE-Eec-CCCC----eeCHH-HHHH----h-cCCCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 78733 222 122 1111 02332 3333 2 3454689999999988884 322 2344
Q ss_pred eEEEEe--ccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchh----hcccCCCCCcceeeeecc
Q 014432 246 IAAVIL--GTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEA----LDTESLNPGEQIFEKIIS 319 (424)
Q Consensus 246 ~IGlIl--GTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~----lD~~S~nPG~q~fEKmiS 319 (424)
.+.+++ |||...+.+.+.. ++ +....-.|+|... .-|.++-+.. +.... +.-.+|...|
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~-----~g-----~l~~~agE~GH~~--~~~~~~~~~~~~~~l~~~~---~~g~~E~~~S 191 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQV-----DG-----RWVVLPGEGGHVD--FAPNSELEAIILEYLRAKI---GHVSAERVLS 191 (316)
T ss_pred CcEEEEecCCCceeeEEEEcC-----CC-----CEEECCCCccccc--CCCCCHHHHHHHHHHHHhc---CCceeeeeec
Confidence 578889 6666666555310 01 1123455666431 1122211111 11122 3457999999
Q ss_pred cccHHHHHHHHH
Q 014432 320 GMYLGEIVRRVL 331 (424)
Q Consensus 320 G~YLGElvRliL 331 (424)
|.-|..+.|...
T Consensus 192 g~gl~~~~~~~~ 203 (316)
T TIGR00749 192 GPGLVNIYEALV 203 (316)
T ss_pred HHHHHHHHHHHH
Confidence 999988888653
No 23
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.10 E-value=0.0042 Score=51.08 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=29.6
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHH
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAK 153 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~ 153 (424)
.+|+||+|||+.+++++.-.|. +.... + +|.. .+.+++++.+.+.+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~~--~--~~~~---~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADPL--E--VIPR---TNKEADAARLKKLIKK 49 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecCE--E--EEEe---cCcchHHHHHHHHHHH
Confidence 4899999999999999865442 12111 1 1211 1345677777766655
No 24
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=96.59 E-value=0.012 Score=59.81 Aligned_cols=184 Identities=22% Similarity=0.267 Sum_probs=99.8
Q ss_pred EEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeee
Q 014432 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFS 177 (424)
|+-|+||||-|+++++..+...... ..+.|+ +.+...|.+.+++.+.+. ..+. .-|-.-+|+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~--~~~~~~------~~~~~s~~~~l~~~l~~~--~~~~--------~~p~~~~ia 62 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLI--DIRRYP------SADFPSFEDALADYLAEL--DAGG--------PEPDSACIA 62 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEE--EEEEEE------GCCCCHHHHHHHHHHHHT--CHHH--------TCEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcCCCCcccc--ccEEEe------cCCcCCHHHHHHHHHHhc--ccCC--------CccceEEEE
Confidence 6889999999999998866542122 112333 233445555555544432 1111 123445555
Q ss_pred e--eeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhccccc-------------C
Q 014432 178 F--PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------N 242 (424)
Q Consensus 178 F--P~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~-------------~ 242 (424)
. |+.. ++.++..|. +.++. +.|.+ .+.++-+.++||=.|.-.+.... +
T Consensus 63 vAGPV~~---~~~~lTN~~--W~i~~-----------~~l~~-~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~ 125 (316)
T PF02685_consen 63 VAGPVRD---GKVRLTNLP--WTIDA-----------DELAQ-RLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPD 125 (316)
T ss_dssp ESS-EET---TCEE-SSSC--CEEEH-----------HHCHC-CCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESS
T ss_pred EecCccC---CEEEecCCC--ccccH-----------HHHHH-HhCCceEEEEcccchheeccCCCCHHHeeeccCCCCC
Confidence 5 5554 566666653 33332 22222 24455789999977654443221 2
Q ss_pred CCceEEE-EeccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhhcc-cCCCCCcceeeeeccc
Q 014432 243 KDAIAAV-ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT-ESLNPGEQIFEKIISG 320 (424)
Q Consensus 243 ~~~~IGl-IlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~-~S~nPG~q~fEKmiSG 320 (424)
+...+.+ =.|||.+.|++.+.. .+..++-||.|.-+ .-|+++.+..+=+ -...-|.=.+|..+||
T Consensus 126 ~~~~~~Vig~GTGLG~a~l~~~~-----------~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG 192 (316)
T PF02685_consen 126 PGGPRAVIGPGTGLGVALLVPDG-----------DGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSG 192 (316)
T ss_dssp TTS-EEEEEESSSEEEEEEEEET-----------TEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSH
T ss_pred CCCcEEEEEcCCCcEEEEEEecC-----------CceEeCCCcccccc--CCCCCHHHHHHHHHHHHhcCCceeEeecch
Confidence 2333332 269999999999842 34569999999763 3567765544321 0011155578999999
Q ss_pred ccHHHHHHH
Q 014432 321 MYLGEIVRR 329 (424)
Q Consensus 321 ~YLGElvRl 329 (424)
+=|..|.+-
T Consensus 193 ~GL~~ly~~ 201 (316)
T PF02685_consen 193 RGLENLYRF 201 (316)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 877666543
No 25
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.97 E-value=0.095 Score=51.17 Aligned_cols=137 Identities=20% Similarity=0.229 Sum_probs=79.6
Q ss_pred EEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeeee
Q 014432 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFS 177 (424)
|.||-|||..|+++++.+|+ +... ...-|........++...-|.+-+.+.+.+.+... ..+. .++|.
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~---~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~-----~~i~-~~~~g 68 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGR---GKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP-----DDIA-AICIG 68 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEE---EEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST-----TCCC-EEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEE---EEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc-----cccc-eeeee
Confidence 67999999999999987553 2211 22234444333346667777788888887766431 0110 00011
Q ss_pred eeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccccCCCceEEEEeccceee
Q 014432 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (424)
Q Consensus 178 FP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~~~~~IGlIlGTGtNa 257 (424)
. =|+...+...+-..+++++ -+.+.||++..|.++.- ..-|-+|-|||+++
T Consensus 69 ~----------------aG~~~~~~~~~~~~~~~~~----------~v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 69 A----------------AGYGRAGDEQEFQEEIVRS----------EVIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp E----------------EEEEETTTTTHHHHHHHHH----------EEEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred E----------------eeecCcccccchhhcceEE----------EEEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 0 1222222211111122222 67889999887777544 36688999999999
Q ss_pred eeecccCCCCcccCCCCCCCcEEEEeccCCc
Q 014432 258 AYVERAHAIPKWHGLLPKSGEMVINMEWGNF 288 (424)
Q Consensus 258 cY~E~~~~I~k~~~~~~~~~~miINtEwG~F 288 (424)
..+.+ ++++.-.--||.+
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~ 137 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHC 137 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTT
T ss_pred EEEEc-------------CCcEEEeCCCCCC
Confidence 98763 2345555668875
No 26
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.47 E-value=0.061 Score=51.60 Aligned_cols=59 Identities=19% Similarity=0.434 Sum_probs=41.7
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeecc--C-ccccccCchhhHHHHHHHHHHHHhhc
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~i--p-~~~~~~~~~~LFd~IA~~i~~fl~~~ 158 (424)
||+||+|.|+.|+++++-.|+ ++...+..++. | +.....+.+++++.+.+++++.+++.
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 799999999999999984432 33333333332 2 22334578899999999999999876
No 27
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.43 Score=48.20 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=82.7
Q ss_pred cccEEEEEcCCceeEEEEEEEcCCcceeEEE---EeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCcee
Q 014432 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQ---EFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~---~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l 170 (424)
.|-|..+|=|+|.-|+.+|.= +++..-+. ....|-||. +-+|++|++.+.+...+...++..++
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~--~~~~~~~a~~~~Tnh~~ig~-----------~~~~~rie~~i~~A~~k~g~d~~~~l 68 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDE--DGTILGRAVGGGTNHWLIGS-----------TTCASRIEDMIREAKEKAGWDKKGPL 68 (336)
T ss_pred CceeEeecCCcceeEEEEECC--CCCEeeEeeccccccccCCc-----------hHHHHHHHHHHHHHHhhcCCCccCcc
Confidence 467899999999999999853 32211110 111234442 44667777777665433222221111
Q ss_pred -eeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEecchHhhhcccccCCCceEE
Q 014432 171 -ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAA 248 (424)
Q Consensus 171 -~LGfTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~-v~v~aivNDTVaTLla~ay~~~~~~IG 248 (424)
.||. ..+++.-.|-++-|.+.|..+-.. .+=..|.||++++|.|+ +....-=|-
T Consensus 69 r~lgL-----------------------~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~-t~g~~~GiV 124 (336)
T KOG1794|consen 69 RSLGL-----------------------GLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAA-TPGGEGGIV 124 (336)
T ss_pred ceeee-----------------------ecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhc-CCCCCCcEE
Confidence 2232 334554556666666666555333 45589999999999986 554455688
Q ss_pred EEeccceeeeeecccCCCCc
Q 014432 249 VILGTGTNAAYVERAHAIPK 268 (424)
Q Consensus 249 lIlGTGtNacY~E~~~~I~k 268 (424)
||-|||+||=-..|-....+
T Consensus 125 LiaGTgs~crl~~~DGs~~~ 144 (336)
T KOG1794|consen 125 LIAGTGSNCRLVNPDGSEKG 144 (336)
T ss_pred EEecCCceeEEECCCCCccC
Confidence 99999999866666554443
No 28
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=93.27 E-value=0.99 Score=45.71 Aligned_cols=122 Identities=21% Similarity=0.212 Sum_probs=76.0
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeee
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfT 175 (424)
-||.||-|||..|..+-+..|+ +.-+ -..=|.++.+...++=+.-|.+-|.+.+++.+.+. -.+-
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g~---vlg~---g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~---------~~i~ 70 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDGN---VLGR---GKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP---------DEIA 70 (301)
T ss_pred EEEEEccCCcceEEEEEcCCCc---EEEE---eccCCceecccchHHHHHHHHHHHHHHHHhcCCCH---------HHhC
Confidence 4899999999999988765442 2222 22346777766667888888899999988766432 1111
Q ss_pred eeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCce-EEEEEecchHhhhcccccCCCceEEEEeccc
Q 014432 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (424)
Q Consensus 176 FSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~-v~aivNDTVaTLla~ay~~~~~~IGlIlGTG 254 (424)
++.+-- +..|.+.....+ .+ .+.+++- -+-|.||....|.++-..+.-+ =+|+|||
T Consensus 71 ~~~agl-------------------a~ag~~~~~~~~-~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~Gi--i~i~GTG 127 (301)
T COG2971 71 AIVAGL-------------------ALAGANVEEARE-EL-ERLLPFAGKVDVENDGLIALRGALGDDDGI--IVIAGTG 127 (301)
T ss_pred ceeeee-------------------eccCcchhHHHH-HH-HHhcCccceEEEecChHHHHhhccCCCCCE--EEEecCC
Confidence 111111 123444422222 22 4556655 7889999999999975554332 3488998
Q ss_pred e
Q 014432 255 T 255 (424)
Q Consensus 255 t 255 (424)
+
T Consensus 128 S 128 (301)
T COG2971 128 S 128 (301)
T ss_pred e
Confidence 4
No 29
>PRK13318 pantothenate kinase; Reviewed
Probab=93.10 E-value=1 Score=44.05 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=47.7
Q ss_pred HhhhcccccCCCceEEEEeccceeeeeecccCCCCcccCC-CCCCCcEEEEeccCCcCCCCCCCCccchhhcccCCCCCc
Q 014432 233 GTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGL-LPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGE 311 (424)
Q Consensus 233 aTLla~ay~~~~~~IGlIlGTGtNacY~E~~~~I~k~~~~-~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~S~nPG~ 311 (424)
+.+++.+...+...+-+-+||++-..++.+-.. +.+. ....-.+-.|+=.. +...+|..+.+. ....+|.
T Consensus 113 a~~~aa~~~~~~~~ivid~GTA~t~d~v~~~g~---~~GG~I~PG~~l~~~aL~~--~ta~Lp~~~~~~----~~~~~g~ 183 (258)
T PRK13318 113 VNAVAAYELYGGPLIVVDFGTATTFDVVSAKGE---YLGGVIAPGINISADALFQ--RAAKLPRVEITK----PDSVIGK 183 (258)
T ss_pred HHHHHHHHHcCCCEEEEEcCCceEEEEEcCCCc---EEEEEECccHHHHHHHHHh--hhhcCCCCcCCC----CCccCCC
Confidence 444444444455678888999999988854321 1110 00000011111000 011255443322 2345789
Q ss_pred ceeeeecccccHHHH--HHHHHHHHhh
Q 014432 312 QIFEKIISGMYLGEI--VRRVLCRMAE 336 (424)
Q Consensus 312 q~fEKmiSG~YLGEl--vRliLl~l~~ 336 (424)
..-|-|-||.|.|-+ +..++.++.+
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~~~~~~~ 210 (258)
T PRK13318 184 NTVEAMQSGIYYGYVGLVEGIVKRIKE 210 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876643 2334444443
No 30
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=92.55 E-value=0.38 Score=51.43 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=41.7
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeec--cCc-cccccCchhhHHHHHHHHHHHHhhcC
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPP-HLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--ip~-~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
+|+||+|+|+.|++++...|+ ++.....+|+ .|. .....+.+++++-+.+++++.+++..
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred EEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 689999999999999976543 3333333343 222 22334677899999999999987643
No 31
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=92.41 E-value=0.42 Score=51.71 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=42.6
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeec--cCc-cccccCchhhHHHHHHHHHHHHhhcC
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPP-HLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--ip~-~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
+|+||+|+|+.|++++..+|+ ++...+.+++ .|. .....+.+++++-+.+++++.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999976553 3333333333 232 23445678899999999999998754
No 32
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=92.22 E-value=0.39 Score=51.19 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=41.5
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeecc--Ccc-ccccCchhhHHHHHHHHHHHHhhcC
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~i--p~~-~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
+|+||+|+|+.|++++..+|+ ++...+.+++. |.. ....+.+++|+-+.+++.+.+.+.+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999976553 33333333332 221 1233567899999999999998764
No 33
>PRK00047 glpK glycerol kinase; Provisional
Probab=91.38 E-value=0.51 Score=50.39 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=42.4
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeec--cCcc-ccccCchhhHHHHHHHHHHHHhhcC
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--ip~~-~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
-+|+||+|+|+.|++++..+|+ ++...+.+|+ .|.. ....+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999999976553 2333333443 2321 2234678899999999999987654
No 34
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=91.37 E-value=0.67 Score=49.79 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=43.0
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccC-----ccccccCchhhHHHHHHHHHHHHhhcC
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-----PHLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip-----~~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
-+|+||+|.|+.|++++..+|+ +....+..|+.+ +.....+.+++++-+.+++.+.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999987653 333333344322 222344678899999999999987654
No 35
>PRK15027 xylulokinase; Provisional
Probab=90.99 E-value=0.68 Score=49.28 Aligned_cols=59 Identities=19% Similarity=0.397 Sum_probs=43.2
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeecc--C-ccccccCchhhHHHHHHHHHHHHhhc
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~i--p-~~~~~~~~~~LFd~IA~~i~~fl~~~ 158 (424)
||+||+|.|+.|++++...|+ ++...+..|++ | +.....+.+++++-+.+++++.+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQGE---VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred EEEEEecccceEEEEEcCCCC---EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999986543 44444445543 2 22344567889999999999998764
No 36
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=90.26 E-value=0.91 Score=49.03 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=44.3
Q ss_pred EEEEEcCCceeEEEEEE-EcCCcceeEEEEeeeec-------cC-------ccccccCchhhHHHHHHHHHHHHhhcC
Q 014432 97 FYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVS-------IP-------PHLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~-L~g~~~~~~~~~~~~~~-------ip-------~~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
+|+||+|.|+.|++++. ..|+ ++...+..|+ .| ......+.+++++-+.+++++.+++.+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred EEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999998 6664 2333334454 23 334555788999999999999987754
No 37
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=90.06 E-value=0.67 Score=48.80 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=42.0
Q ss_pred EEEEcCCceeEEEEEEEcCCcceeEEEEeeeecc---CccccccCchhhHHHHHHHHHHHHhhcCC
Q 014432 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI---PPHLMTGSSHELFDYIAAALAKFVATEGE 160 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~i---p~~~~~~~~~~LFd~IA~~i~~fl~~~~~ 160 (424)
|+||+|.|++|++++.+.|+ ++......++. ++.....+.+++++-+++++.+++++.+.
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~ 63 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASE 63 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCC
Confidence 57999999999999987664 33333323331 12222446788999999999999987653
No 38
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=89.95 E-value=0.83 Score=49.06 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=44.1
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccC--c-cccccCchhhHHHHHHHHHHHHhhc
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP--P-HLMTGSSHELFDYIAAALAKFVATE 158 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip--~-~~~~~~~~~LFd~IA~~i~~fl~~~ 158 (424)
-||+||+|.|+.|+.++..++ ..++......+.+. . .....+.++++..+.++|.+.+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999874 22333332223222 1 2345578899999999999999885
No 39
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=89.65 E-value=1.2 Score=47.80 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=42.5
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeecc--C-ccccccCchhhHHHHHHHHHHHHhhcC
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~i--p-~~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
-+|+||+|.|+.|++++..+|+ ++...+..+++ | +.....+.+++|+-+.+++.+.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999986553 33333334432 2 223344677899999999999987654
No 40
>PRK10331 L-fuculokinase; Provisional
Probab=88.53 E-value=1.3 Score=46.92 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=41.6
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeec--c--C-ccccccCchhhHHHHHHHHHHHHhhc
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--I--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--i--p-~~~~~~~~~~LFd~IA~~i~~fl~~~ 158 (424)
-+|+||+|.|+.|++++..+|+ +....+..++ + | ......+.+++++-+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 3789999999999999987653 3333333332 1 1 11334467889999999999998753
No 41
>PLN02295 glycerol kinase
Probab=88.51 E-value=1.4 Score=47.35 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=43.6
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeec--cCc-cccccCchhhHHHHHHHHHHHHhhcCC
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPP-HLMTGSSHELFDYIAAALAKFVATEGE 160 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~--ip~-~~~~~~~~~LFd~IA~~i~~fl~~~~~ 160 (424)
+|+||+|.|+.|++++..+|+ ++...+.+|+ .|+ .....+.+++|+-+.+++.+.+++...
T Consensus 2 vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999976553 3333333343 232 234457889999999999999987643
No 42
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=87.70 E-value=1.7 Score=46.00 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=41.1
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeec----cC-ccccccCchhhHHHHHHHHHHHHhh
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS----IP-PHLMTGSSHELFDYIAAALAKFVAT 157 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~----ip-~~~~~~~~~~LFd~IA~~i~~fl~~ 157 (424)
+|+||+|.|+.|++++..+|+ ++.+.+.+++ .| +.....+.+++|+-+.+++++.+.+
T Consensus 3 ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999986553 3333333333 12 2233446788999999999999864
No 43
>PRK04123 ribulokinase; Provisional
Probab=85.23 E-value=3.3 Score=44.81 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=40.8
Q ss_pred cEEEEEcCCceeEEEEEEE-cCCcceeEEEEeeeecc--------Cc-cccccCchhhHHHHHHHHHHHHhhcC
Q 014432 96 LFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSI--------PP-HLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L-~g~~~~~~~~~~~~~~i--------p~-~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
.||+||+|.|+.|++++.. +|+ ++...+..|+. |+ .....+.+++++-+.+++.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999985 653 23233333431 22 12233466788888899999887544
No 44
>PRK13321 pantothenate kinase; Reviewed
Probab=83.25 E-value=2.8 Score=40.99 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=15.9
Q ss_pred EEEEEcCCceeEEEEEE
Q 014432 97 FYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~ 113 (424)
+|+||+|||++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 68999999999999996
No 45
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=83.09 E-value=2.7 Score=44.36 Aligned_cols=59 Identities=19% Similarity=0.063 Sum_probs=38.0
Q ss_pred EEEEcCCceeEEEEEEEcCCcceeE-EEEeeeeccCcc---ccccCchhhHHHHHHHHHHHHh
Q 014432 98 YALDLGGTNFRVLRVQLGGREGRVV-KQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVA 156 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~-~~~~~~~~ip~~---~~~~~~~~LFd~IA~~i~~fl~ 156 (424)
||||+|.|+.|++++..++.+..+. ....+.++...+ ....+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999975533333 222222221111 1123456789999999998865
No 46
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=81.89 E-value=44 Score=34.21 Aligned_cols=57 Identities=9% Similarity=0.180 Sum_probs=34.9
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCc-cccccCchhhHHHHHHHHHHHHhh
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVAT 157 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~-~~~~~~~~~LFd~IA~~i~~fl~~ 157 (424)
+++||+|-+++|++..+..+++...+... -..|. .+..|.-.+ .+-+++.|.+.+++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~---~~~~~~gi~~G~I~d-~~~~~~~i~~al~~ 59 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGV---GTHPSRGIKKGVIND-IEAAVGSIQRAIEA 59 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEE---EEecCCCccCcEEEc-HHHHHHHHHHHHHH
Confidence 68999999999999998866542222111 12343 345554333 34556667666665
No 47
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=81.46 E-value=45 Score=34.18 Aligned_cols=225 Identities=19% Similarity=0.157 Sum_probs=123.3
Q ss_pred ccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeee
Q 014432 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGf 174 (424)
.-.|+=|+||||-|+++|+......... +.+...+. .-+.+.|.+|+.++... .+..--|
T Consensus 6 ~p~LvgDIGGTnaRfaLv~~a~~~~~~~----------~~~~~~dy----psle~av~~yl~~~~~~------~~~~a~~ 65 (320)
T COG0837 6 YPRLVGDIGGTNARFALVEIAPAEPLQA----------ETYACADY----PSLEEAVQDYLSEHTAV------APRSACF 65 (320)
T ss_pred CceEEEecCCcceEEEEeccCCCCcccc----------ceecccCc----CCHHHHHHHHHHHhhcc------CccceEE
Confidence 3467779999999999998854321111 22222222 22345566666655211 1111222
Q ss_pred eeeeeeeeccCCceEEEecccc-eecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcccccC-----------
Q 014432 175 TFSFPVRQTSIASGDLIKWTKG-FSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----------- 242 (424)
Q Consensus 175 TFSFP~~Q~si~~g~Li~wtKg-F~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~----------- 242 (424)
.--=|+.- --+++|.. |.++ .+=-|+.+.++=+.++||=+|.-++-....
T Consensus 66 AiAgPv~g------d~v~lTN~~W~~s------------~~~~r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~ 127 (320)
T COG0837 66 AIAGPIDG------DEVRLTNHDWVFS------------IARMRAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGK 127 (320)
T ss_pred EEecCccC------CEEeeecCccccc------------HHHHHHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCC
Confidence 22223222 13333321 1111 112244566777899999998877766642
Q ss_pred --CCceEEEE-eccceeeeeecccCCCCcccCCCCCCCcEEEEeccCCcCCCCCCCCccchhhccc-CCCCCcceeeeec
Q 014432 243 --KDAIAAVI-LGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTE-SLNPGEQIFEKII 318 (424)
Q Consensus 243 --~~~~IGlI-lGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~Fg~~~lp~T~~D~~lD~~-S~nPG~q~fEKmi 318 (424)
++..+++| =|||--.|++.+.. .+.+.+-+|=|-- +.-|+|+-|..+=+. ..+-|.-.-|..+
T Consensus 128 ~~~~a~~avlGPGTGLGVa~Lv~~~-----------~~w~~lp~EGGHv--df~P~~~~E~~i~~~l~~~~GrVS~Er~L 194 (320)
T COG0837 128 PEPNAPRAVLGPGTGLGVAGLVPNG-----------GGWIPLPGEGGHV--DFAPRSEREFQILEYLRARFGRVSAERVL 194 (320)
T ss_pred CCCCCceEEEcCCCCcceEEEEecC-----------CeeEeccCCCccc--cCCCCCHHHHHHHHHHHHhcCccchhhhc
Confidence 23333322 36777788888742 3357788998865 346899888877542 3345677779999
Q ss_pred ccccHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccCcchhchhccC-CCcCHHHHHHHHHHHhCC
Q 014432 319 SGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHD-TSPDLRVVGKKLKDILEV 384 (424)
Q Consensus 319 SG~YLGElvRliLl~l~~~~~LF~~~~~~~l~~~~~~~t~~ls~ie~d-~s~~~~~~~~il~~~l~i 384 (424)
||+=|=-|.|-+--.. +..|. ..+.+.+++-.-+ ....-+++.+++...||-
T Consensus 195 SG~GL~~iY~al~~~~--------~~~~~------~~~p~~It~~al~g~d~~a~~tl~lF~~~lG~ 247 (320)
T COG0837 195 SGPGLVNLYRALCAAD--------GRLPE------DLTPAAITERALAGGDALARETLSLFCAILGR 247 (320)
T ss_pred ccccHHHHHHHHHHhh--------CCCcc------cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 9998866655432221 12222 1222455444333 444556677777666654
No 48
>PRK13410 molecular chaperone DnaK; Provisional
Probab=81.28 E-value=4.5 Score=45.27 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.0
Q ss_pred ccEEEEEcCCceeEEEEEE
Q 014432 95 GLFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~ 113 (424)
|..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 5689999999999999885
No 49
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=79.64 E-value=21 Score=35.86 Aligned_cols=101 Identities=16% Similarity=0.280 Sum_probs=59.6
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeee
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~-~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGf 174 (424)
.+++||+|.+++|++.++-.++...+. .....++|.+.. .|.-.+ .+-+++.|.+.+++.+... + -.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~--~~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~~~-----k----~v 71 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLE--HYAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGINT-----K----KA 71 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEE--EEEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCCCc-----c----eE
Confidence 589999999999998887544432222 333567776543 332111 3556777888877765321 1 23
Q ss_pred eeeeeeeeccCCceEEEecccceecCC-CCCCcHHHHHHHHHHH
Q 014432 175 TFSFPVRQTSIASGDLIKWTKGFSIED-TVGEDVVGELTKAMER 217 (424)
Q Consensus 175 TFSFP~~Q~si~~g~Li~wtKgF~~~~-v~G~Dv~~lL~~al~r 217 (424)
.+++|-.+. + +|-+.++. +-.+++.+.+.-..++
T Consensus 72 ~~alp~~~~------~---~r~~~~p~~i~~~el~~~i~~e~~~ 106 (348)
T TIGR01175 72 ATAVPGSAV------I---TKVIPVPAGLDERELEFAVYIEASH 106 (348)
T ss_pred EEEecCCee------E---EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 566666542 1 12355565 5567777777644444
No 50
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=78.31 E-value=20 Score=35.26 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=63.0
Q ss_pred CCCcccccEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCc
Q 014432 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (424)
Q Consensus 89 P~G~E~G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~ 168 (424)
|.-+..+.+++||+|-|++|+...+..+. .... .....+.++.|.-.+ ++-....|..+++....... .
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~---~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g----~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAG---ALEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG----R 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEE---EeccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC----C
Confidence 44456778999999999999988765332 1111 112222344443222 55566677777663221100 1
Q ss_pred eeeeeeeeeeeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEecchHhhhcc
Q 014432 169 QRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG 238 (424)
Q Consensus 169 ~l~LGfTFSFP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~v~v~aivNDTVaTLla~ 238 (424)
..+--.+ +.|..++. .+ ...+.+++++-|++ +..++++..|...+.
T Consensus 87 ~i~~v~~-~vp~~~~~--------------------~~-~~~~~~~~~~aGl~--~~~ii~e~~A~a~~~ 132 (267)
T PRK15080 87 ELTHAAT-AIPPGTSE--------------------GD-PRAIINVVESAGLE--VTHVLDEPTAAAAVL 132 (267)
T ss_pred CcCeEEE-EeCCCCCc--------------------hh-HHHHHHHHHHcCCc--eEEEechHHHHHHHh
Confidence 1111122 56655431 01 12355777777765 567899999887653
No 51
>CHL00094 dnaK heat shock protein 70
Probab=78.08 E-value=6.4 Score=43.55 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=16.3
Q ss_pred cEEEEEcCCceeEEEEEE
Q 014432 96 LFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~ 113 (424)
.+++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME 20 (621)
T ss_pred ceEEEEeCcccEEEEEEE
Confidence 579999999999999885
No 52
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=73.61 E-value=14 Score=41.29 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=25.8
Q ss_pred ceEEEEEecchHhhhcccccCC--CceEEEEeccceeeeeecc
Q 014432 222 MRVAALVNDTIGTLAGGRYHNK--DAIAAVILGTGTNAAYVER 262 (424)
Q Consensus 222 v~v~aivNDTVaTLla~ay~~~--~~~IGlIlGTGtNacY~E~ 262 (424)
++|+.|+|+.+|.-++..+... ...+=+=+|-||--.-+..
T Consensus 188 l~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 188 LNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred CCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 4678999999999997655432 2222333666666554444
No 53
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=72.96 E-value=11 Score=42.24 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.9
Q ss_pred ccEEEEEcCCceeEEEEEE
Q 014432 95 GLFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~ 113 (424)
|..++||||.||..|++++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 4589999999999999874
No 54
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=72.71 E-value=7.9 Score=42.86 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=17.1
Q ss_pred cccEEEEEcCCceeEEEEEE
Q 014432 94 KGLFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~ 113 (424)
....++||||.||-.|+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CCeEEEEEeccccEEEEEEE
Confidence 34689999999999999874
No 55
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=70.60 E-value=8.3 Score=42.65 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=16.4
Q ss_pred cEEEEEcCCceeEEEEEE
Q 014432 96 LFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~ 113 (424)
..++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME 20 (627)
T ss_pred cEEEEEeCcccEEEEEEE
Confidence 479999999999999886
No 56
>PLN03184 chloroplast Hsp70; Provisional
Probab=67.39 E-value=18 Score=40.53 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=24.2
Q ss_pred ceEEEEEecchHhhhcccccCCC--ceEEEEeccceeeeee
Q 014432 222 MRVAALVNDTIGTLAGGRYHNKD--AIAAVILGTGTNAAYV 260 (424)
Q Consensus 222 v~v~aivNDTVaTLla~ay~~~~--~~IGlIlGTGtNacY~ 260 (424)
++++.++|+.+|.-++..+.... ..+=+=+|-||--.-+
T Consensus 200 l~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi 240 (673)
T PLN03184 200 LEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSV 240 (673)
T ss_pred CCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEE
Confidence 56789999999999886654322 2222335666544333
No 57
>PRK13324 pantothenate kinase; Reviewed
Probab=66.30 E-value=39 Score=33.53 Aligned_cols=45 Identities=13% Similarity=0.377 Sum_probs=27.5
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHH
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~ 149 (424)
.|++|.|=||.++++.+ ++ ... ..++++..-...+.++++-++..
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~----~~~r~~t~~~~~t~de~~~~l~~ 46 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIV----SQIRYATSSVDSTSDQMGVFLRQ 46 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEE----EEEEEecCccccchHHHHHHHHH
Confidence 58999999999999986 22 122 13556542223345555555544
No 58
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=66.18 E-value=46 Score=36.42 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=62.4
Q ss_pred cccEEEEEcCCceeEEEEEEE-cCCcceeEEEEeeeeccCc-cccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceee
Q 014432 94 KGLFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L-~g~~~~~~~~~~~~~~ip~-~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~ 171 (424)
..-+++||.|-|.-|+++++- .|+... ..+..-...-|+ .....+.++++.-+.+||+...++-.... .-.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~-~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~------~~~ 77 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLS-LAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLN------IKV 77 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccce-eeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccc------ccc
Confidence 456899999999999999973 332211 111111112232 34566789999999999999887654332 123
Q ss_pred eeeeeeeeeeeccCCceEEEecccceecCC
Q 014432 172 LGFTFSFPVRQTSIASGDLIKWTKGFSIED 201 (424)
Q Consensus 172 LGfTFSFP~~Q~si~~g~Li~wtKgF~~~~ 201 (424)
.|.|=|==+.| ....+-|.|+...+.
T Consensus 78 ~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 78 VGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred cccEEEEEEec----CCceEEeecCCCCcc
Confidence 45565666666 557788988876655
No 59
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=62.34 E-value=23 Score=38.25 Aligned_cols=106 Identities=25% Similarity=0.400 Sum_probs=70.8
Q ss_pred ccEEEEEcCCceeEEEEEEEcCCcceeEEEEe-eeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeee
Q 014432 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEF-EEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~-~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LG 173 (424)
.-.||||-|-|+-|..++.=+|+-....+... +.||-| ..+..+..+++.-...++.+-+.+.+.. +.+.--+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~-GWVEhDp~eIw~~~~~~l~~a~~~~~i~----~~~iaaIG 79 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQP-GWVEHDPLEIWASVRSVLKEALAKAGIK----PGEIAAIG 79 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCC-CccccCHHHHHHHHHHHHHHHHHHcCCC----ccceEEEE
Confidence 45789999999999988855443221111111 234544 3556788999999999999999887643 34566789
Q ss_pred eeeeeeeeeccCCceEEEeccc--ceec------CCCCCCcHHHHHHHH
Q 014432 174 FTFSFPVRQTSIASGDLIKWTK--GFSI------EDTVGEDVVGELTKA 214 (424)
Q Consensus 174 fTFSFP~~Q~si~~g~Li~wtK--gF~~------~~v~G~Dv~~lL~~a 214 (424)
+| +| +.+.+-|.| |=-+ -+--+.++++-|++.
T Consensus 80 IT-----NQ----RETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~ 119 (499)
T COG0554 80 IT-----NQ----RETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD 119 (499)
T ss_pred ee-----cc----ceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc
Confidence 87 56 889999999 4222 222455666666543
No 60
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=61.88 E-value=22 Score=39.70 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=25.4
Q ss_pred ceEEEEEecchHhhhcccccC----CCceEEEEeccceeeeeecc
Q 014432 222 MRVAALVNDTIGTLAGGRYHN----KDAIAAVILGTGTNAAYVER 262 (424)
Q Consensus 222 v~v~aivNDTVaTLla~ay~~----~~~~IGlIlGTGtNacY~E~ 262 (424)
++++.++|+.+|.-++..... +...+=+=+|-||--+-+..
T Consensus 168 l~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 168 LNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred CceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 457899999999999865532 22333333566665444433
No 61
>PRK13320 pantothenate kinase; Reviewed
Probab=58.78 E-value=65 Score=31.53 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=16.1
Q ss_pred EEEEEcCCceeEEEEEE
Q 014432 97 FYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~ 113 (424)
+|+||.|-|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999987
No 62
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=56.59 E-value=66 Score=31.43 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=27.7
Q ss_pred EEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHH
Q 014432 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~ 149 (424)
|++|.|=||+.+++.+ ++ ... ..|++|.+.. .+.+++..++..
T Consensus 2 L~iDiGNT~i~~g~~~--~~--~~~----~~~r~~t~~~-~t~de~~~~l~~ 44 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN--KVY----QFWRLATNLM-KTYDEHSEFLKE 44 (243)
T ss_pred EEEEECCCcEEEEEEE--CC--EEE----EEEEecCCCc-cChHHHHHHHHH
Confidence 8999999999999985 22 222 1366665544 356666655443
No 63
>PLN02669 xylulokinase
Probab=56.37 E-value=28 Score=38.12 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=21.9
Q ss_pred cCCCCcccccEEEEEcCCceeEEEEEEEcCC
Q 014432 87 NLPTGDEKGLFYALDLGGTNFRVLRVQLGGR 117 (424)
Q Consensus 87 ~lP~G~E~G~fLAlDlGGTNlRV~~V~L~g~ 117 (424)
++|.+. -||+||+|.|++|++++..+|+
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~ 30 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLR 30 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCC
Confidence 456533 4999999999999999976553
No 64
>PRK13411 molecular chaperone DnaK; Provisional
Probab=56.15 E-value=41 Score=37.61 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=16.6
Q ss_pred ccEEEEEcCCceeEEEEEE
Q 014432 95 GLFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~ 113 (424)
+..++||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999875
No 65
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=55.65 E-value=34 Score=33.08 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=30.5
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcC
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~ 159 (424)
+++||+|.|+.|+++++ .| .+.... +. + .+..++-.++.+.+.+++.+
T Consensus 2 ~lGIDiGtts~K~vl~d-~g---~il~~~---~~-~-------~~~~~~~~~~~l~~~~~~~~ 49 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DG---KVIGYK---WL-D-------TTPVIEETARAILEALKEAG 49 (248)
T ss_pred EEEEEcChhheEEEEEc-CC---EEEEEE---Ee-c-------CCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999996 43 222222 22 1 12345666777777776543
No 66
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=55.63 E-value=37 Score=37.17 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=64.6
Q ss_pred cEEEEEcCCceeEEEEEEEc-CCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeee
Q 014432 96 LFYALDLGGTNFRVLRVQLG-GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~-g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGf 174 (424)
-+++||+|--.-|++++... |..-.........+.++......+.++.+.-+...|.+.+++.+... .--.|+
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~------~~V~gI 77 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP------ADVVGI 77 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh------hHeeEE
Confidence 37899999999999999986 53211111111123345555567789999999999999999987642 234677
Q ss_pred eeeeeeeeccCCc-eEEEecccceec
Q 014432 175 TFSFPVRQTSIAS-GDLIKWTKGFSI 199 (424)
Q Consensus 175 TFSFP~~Q~si~~-g~Li~wtKgF~~ 199 (424)
.|.|-|.-.-+++ |.-+.....|..
T Consensus 78 GvDaTcSlvv~d~~g~pl~v~~~~~~ 103 (544)
T COG1069 78 GVDATCSLVVIDRDGNPLAVLPEFPN 103 (544)
T ss_pred EEcceeeeEEECCCCCeeccCCCCCC
Confidence 7777676555443 355555555544
No 67
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=54.35 E-value=25 Score=38.08 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCCceEEEEEecchHhhhcccccCCC-ceEEEE--ecccee-eeeec
Q 014432 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKD-AIAAVI--LGTGTN-AAYVE 261 (424)
Q Consensus 207 v~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~~~-~~IGlI--lGTGtN-acY~E 261 (424)
=.+.+.+|.+..|+ +++.++|+.+|..++.+...+. ...=+| +|-||- ++.++
T Consensus 150 qr~~~~~Aa~~agl--~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~ 206 (602)
T PF00012_consen 150 QRQALRDAAELAGL--NVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVE 206 (602)
T ss_dssp HHHHHHHHHHHTT---EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEE
T ss_pred hhhccccccccccc--ccceeecccccccccccccccccccceeccccccceEeeeehh
Confidence 34556667777775 5688999999998875444332 223333 455544 44443
No 68
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=50.00 E-value=30 Score=37.96 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.4
Q ss_pred EEEEEcCCceeEEEEEE
Q 014432 97 FYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~ 113 (424)
.++||||.||..|+.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 58999999999999875
No 69
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=49.87 E-value=2.1e+02 Score=28.78 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCceEEEEEecchHhhhcccccCCCceEEEEeccc
Q 014432 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (424)
Q Consensus 208 ~~lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~~~~~IGlIlGTG 254 (424)
.+.++++++..| ++++.++|+.+|..++.........-++|+--|
T Consensus 114 r~~~~~~~~~ag--~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG 158 (333)
T TIGR00904 114 RRAVKESALSAG--AREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIG 158 (333)
T ss_pred HHHHHHHHHHcC--CCeEEEecCHHHHHHhcCCcccCCceEEEEEcC
Confidence 344666666655 567899999999998765543333334554444
No 70
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=46.20 E-value=42 Score=37.10 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=14.7
Q ss_pred EEEEcCCceeEEEEEE
Q 014432 98 YALDLGGTNFRVLRVQ 113 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~ 113 (424)
++||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 6899999999999885
No 71
>PRK03657 hypothetical protein; Validated
Probab=45.57 E-value=71 Score=29.86 Aligned_cols=69 Identities=22% Similarity=0.424 Sum_probs=46.7
Q ss_pred HHcCCCHHHHHH---HHHHHHHHHHHhhccCCCCCcceeecccccCCCC----cccc-cEEEEEcCCceeEEEEEEEcC
Q 014432 46 EKCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 46 ~~f~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MLPSyv~~lP~G----~E~G-~fLAlDlGGTNlRV~~V~L~g 116 (424)
+.+.+|.+.|++ ++..-..+|-+|....-++++..--|-+.. |+| .+.| .|++|...|. ..+-..++.|
T Consensus 69 ~lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g 145 (170)
T PRK03657 69 KILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAG 145 (170)
T ss_pred HhcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCC
Confidence 345688888877 888888999998876555777777777654 654 3567 4899987654 4443334444
No 72
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=44.06 E-value=98 Score=28.46 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=36.3
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCc-cccccCchhhHHHHHHHHHHHHhhc
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVATE 158 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~-~~~~~~~~~LFd~IA~~i~~fl~~~ 158 (424)
|.+||+|-|+++++..++.+++...+.-.. ..|. .+..|.-.+ .+-.+++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~---~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG---EVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE---EecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 579999999999999998765432221111 1243 355564434 455677777777654
No 73
>PRK13322 pantothenate kinase; Reviewed
Probab=39.51 E-value=78 Score=31.01 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=26.7
Q ss_pred eecCCCCCCcHHHHHHHHHHHc-CCCceEEEEEecchHhhhcccccCC
Q 014432 197 FSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDTIGTLAGGRYHNK 243 (424)
Q Consensus 197 F~~~~v~G~Dv~~lL~~al~r~-~l~v~v~aivNDTVaTLla~ay~~~ 243 (424)
.-++.|++..+.+.|++++++. ++++ .-+-.+....=+..+|.+|
T Consensus 51 v~vsSV~p~~~~~~l~~~l~~~~~~~~--~~v~~~~~~~gv~~~y~~p 96 (246)
T PRK13322 51 CRIVSVLSEEETARLVAILEKRLGIPV--VFAKVAAELAGVRNGYEDP 96 (246)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCe--EEEecCCcCCCceecCCCh
Confidence 4556788889999999999775 4443 2232333323344555443
No 74
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=36.94 E-value=82 Score=34.92 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCCCCCCCCceeeeeeee
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 176 (424)
.++||||.||-.|+.. .+....++.....+..+|.-+--...+-++..-| .+.++ +..+|-.|
T Consensus 21 viGIDlGTT~S~va~~--~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A-ti~~~--------------KrliG~~~ 83 (595)
T PRK01433 21 AVGIDFGTTNSLIAIA--TNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK-GLRSI--------------KRLFGKTL 83 (595)
T ss_pred EEEEEcCcccEEEEEE--eCCeeEEEECCCCCeecCeEEEEcCCCEEECchh-hHHHH--------------HHHhCCCc
Q ss_pred e------------eeeeeccCCceEEEecccceecCCCCCCcHHHHHHHHHHHcCCC-----------------------
Q 014432 177 S------------FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD----------------------- 221 (424)
Q Consensus 177 S------------FP~~Q~si~~g~Li~wtKgF~~~~v~G~Dv~~lL~~al~r~~l~----------------------- 221 (424)
+ .+..+..-....+..=++.|...++...-+..+-+.|-...|-+
T Consensus 84 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 84 KEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred hhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Q ss_pred -----ceEEEEEecchHhhhcccccCCCceEEEEeccc
Q 014432 222 -----MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (424)
Q Consensus 222 -----v~v~aivNDTVaTLla~ay~~~~~~IGlIlGTG 254 (424)
++++.++|..+|.-++..........-+|+--|
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlG 201 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLG 201 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECC
No 75
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=35.68 E-value=75 Score=32.89 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=36.0
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccC-ccccccCchhhHHHHH---HHHHHHHhhcCC
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-PHLMTGSSHELFDYIA---AALAKFVATEGE 160 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip-~~~~~~~~~~LFd~IA---~~i~~fl~~~~~ 160 (424)
.|+|..|||+.++++++-.+. +.... ..-+ +++ +..+..-|.++ +.|.+++++++.
T Consensus 2 il~in~Gsts~k~alf~~~~~---~~~~~---~~~~~~~~--~~~~~~~~q~~~r~~~i~~~l~~~~~ 61 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP---LFEET---LRHSVEEL--GRFKNVIDQFEFRKQVILQFLEEHGI 61 (351)
T ss_pred EEEEecCchhheEEEEeCCCc---eeeee---ecCCHHHh--cccccHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999999999865432 11111 1112 222 24456677777 888888887653
No 76
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=35.30 E-value=4.8e+02 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.373 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCceEEEEEecchHhhhcccccCCCceEEEEeccc
Q 014432 210 ELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (424)
Q Consensus 210 lL~~al~r~~l~v~v~aivNDTVaTLla~ay~~~~~~IGlIlGTG 254 (424)
-+.+|++.. .++++.++|..+|..++.........-++|+--|
T Consensus 116 ~l~~a~~~a--g~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG 158 (335)
T PRK13929 116 AISDAVKNC--GAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIG 158 (335)
T ss_pred HHHHHHHHc--CCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeC
Confidence 344455554 4667899999999999865443333445565444
No 77
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=34.47 E-value=24 Score=34.47 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=17.5
Q ss_pred hHhhhcccccCCCceEEEEecc
Q 014432 232 IGTLAGGRYHNKDAIAAVILGT 253 (424)
Q Consensus 232 VaTLla~ay~~~~~~IGlIlGT 253 (424)
+|.|.|-+-.||++.||..+++
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~ 94 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVD 94 (230)
T ss_pred HHHHHHHhccCcccceeeEEEc
Confidence 7889998999999999943333
No 78
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=31.81 E-value=1.1e+02 Score=23.12 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 014432 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHA 68 (424)
Q Consensus 35 ~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~ 68 (424)
..++++++.+.+.|.++.+.+++=+..|..+|.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999989999998875
No 79
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=31.67 E-value=39 Score=34.37 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=18.9
Q ss_pred cccEEEEEcCCceeEEEEEEEcC
Q 014432 94 KGLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (424)
...|+++|-|.||||+-+++=+|
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg 26 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDG 26 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCc
Confidence 45799999999999998885433
No 80
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=31.16 E-value=1.8e+02 Score=29.47 Aligned_cols=61 Identities=15% Similarity=0.347 Sum_probs=35.3
Q ss_pred EEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCC
Q 014432 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (424)
Q Consensus 99 AlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~ 161 (424)
.||+|-.++|++.++-.+++..+ ...-..++|........-.=.+.+++.|.+.+++++..
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l--~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~ 61 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQL--EAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIK 61 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EE--EEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT--
T ss_pred CeecCCCeEEEEEEEEcCCccEE--EEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 48999999999888765443322 23346778887643322223467788888888876643
No 81
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.11 E-value=1.1e+02 Score=27.76 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=42.9
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHhhcCCC
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~ 161 (424)
..+++|=|+..++|++.+.+....++.....++.+++.- +.+++=+|-. .++.|+++++.+
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq~-~f~kl~~dy~Vd 63 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQF-TFAKLMEDYKVD 63 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHHH-HHHHHHHHcCCC
Confidence 467899999999999998766555555666688888764 4455555543 467777777653
No 82
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=31.00 E-value=3.2e+02 Score=26.36 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCceEEEEEecchHhhhc
Q 014432 209 GELTKAMERIGLDMRVAALVNDTIGTLAG 237 (424)
Q Consensus 209 ~lL~~al~r~~l~v~v~aivNDTVaTLla 237 (424)
+.+.++++.-|+ +++.++|+.+|..++
T Consensus 78 ~a~~~a~~~aGl--~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 78 KVIVNVIESAGI--EVLHVLDEPTAAAAV 104 (239)
T ss_pred HHHHHHHHHcCC--ceEEEeehHHHHHHH
Confidence 456677777765 457999999998875
No 83
>PRK13411 molecular chaperone DnaK; Provisional
Probab=30.95 E-value=1.3e+02 Score=33.75 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.3
Q ss_pred cccEEEEEcCCceeEEEEEEEcC
Q 014432 94 KGLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (424)
.+.+|++||||.+|-|.++++.+
T Consensus 185 ~~~vlV~DlGgGT~dvsi~~~~~ 207 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSILQLGD 207 (653)
T ss_pred CCEEEEEEcCCCeEEEEEEEEeC
Confidence 45699999999999999999954
No 84
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=30.70 E-value=1e+02 Score=33.31 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.1
Q ss_pred ccccEEEEEcCCceeEEEEEEEcC
Q 014432 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 93 E~G~fLAlDlGGTNlRV~~V~L~g 116 (424)
..+.+|.+|+||+++-|.++++..
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~ 209 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSN 209 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEET
T ss_pred cccceeccccccceEeeeehhccc
Confidence 456899999999999999999864
No 85
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=30.14 E-value=85 Score=33.38 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.1
Q ss_pred EEEEcCCceeEEEEEEEc
Q 014432 98 YALDLGGTNFRVLRVQLG 115 (424)
Q Consensus 98 LAlDlGGTNlRV~~V~L~ 115 (424)
+|+|+|-|+++..+++|.
T Consensus 4 iAvDiGTTti~~~L~dl~ 21 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLE 21 (412)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEcchhheeeEEEECC
Confidence 799999999999999995
No 86
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=29.94 E-value=1.8e+02 Score=29.09 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=39.9
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccC-chhhHHHHHHHHHHHHhhc
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVATE 158 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~-~~~-~~~LFd~IA~~i~~fl~~~ 158 (424)
|=+||+|-.++|..++++.+.............++.+.+- ++. .++=.+-+.+++..|.+..
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~ 65 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL 65 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999986433233333334566766652 222 3455666677888886643
No 87
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.90 E-value=73 Score=31.20 Aligned_cols=51 Identities=35% Similarity=0.407 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHcCCCceEEEEEecchHhhh--ccccc-CCCceEEEEeccceee
Q 014432 206 DVVGELTKAMERIGLDMRVAALVNDTIGTLA--GGRYH-NKDAIAAVILGTGTNA 257 (424)
Q Consensus 206 Dv~~lL~~al~r~~l~v~v~aivNDTVaTLl--a~ay~-~~~~~IGlIlGTGtNa 257 (424)
-+...|.+.++|+ +-++|+.+|-||=+|+= ...|. -|...=|+|-|||.-.
T Consensus 144 ~vA~el~~Ei~rr-~GvDV~v~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~G 197 (278)
T COG4071 144 KVAEELYKEIKRR-LGVDVVVMVADTDATYRILGFYFTALPYAIPGIISGTGVFG 197 (278)
T ss_pred HHHHHHHHHHHHH-hCCceEEEEecCchHHHHHHHHHhhccccCCCeecccchHH
Confidence 4667777777776 34667778888888863 22222 2333448899999754
No 88
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=29.64 E-value=38 Score=34.74 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.8
Q ss_pred cccEEEEEcCCceeEEEEEE
Q 014432 94 KGLFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~ 113 (424)
.+..|.+|+|||+..|+.|.
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 56799999999999999873
No 89
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=29.52 E-value=56 Score=23.10 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=17.7
Q ss_pred CCCCCcceeeeecccccHHHHHHHHHHHH
Q 014432 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRM 334 (424)
Q Consensus 306 S~nPG~q~fEKmiSG~YLGElvRliLl~l 334 (424)
++||.+|+-|-=-+..|+|-++=.++--+
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vL 30 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVL 30 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHH
Confidence 57999999999999999999887776544
No 90
>PRK10854 exopolyphosphatase; Provisional
Probab=28.24 E-value=2.6e+02 Score=30.29 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=41.8
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccC-chhhHHHHHHHHHHHHhh
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVAT 157 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~-~~~-~~~LFd~IA~~i~~fl~~ 157 (424)
.|=+||+|-.++|..+++..+....++....+...+.+.+. ++. .++=.+-..+++..|...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 47799999999999999986543344444445566766553 221 346677777888877553
No 91
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=26.71 E-value=79 Score=22.50 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCCCCcceeeeecccccHHHHHHHHHHHH
Q 014432 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRM 334 (424)
Q Consensus 306 S~nPG~q~fEKmiSG~YLGElvRliLl~l 334 (424)
.+||.+|+-|-=-...|+|-++=.++--+
T Consensus 4 ~~NpN~q~VELNRTSLy~GlLlifvl~vL 32 (39)
T PRK00753 4 NPNPNKQPVELNRTSLYLGLLLVFVLGIL 32 (39)
T ss_pred CCCCCCCCceechhhHHHHHHHHHHHHHH
Confidence 67999999999999999999877766544
No 92
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=25.06 E-value=1.9e+02 Score=31.75 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.1
Q ss_pred cccEEEEEcCCceeEEEEEEEcC
Q 014432 94 KGLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (424)
...+|.+|+||.++-|.++++.+
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~ 204 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGD 204 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecC
Confidence 34699999999999999999964
No 93
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=24.36 E-value=1.8e+02 Score=32.75 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.8
Q ss_pred ccEEEEEcCCceeEEEEEEEcC
Q 014432 95 GLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g 116 (424)
+.+|++||||.+|=|.++++.+
T Consensus 212 ~~vlV~DlGGGT~DvSil~~~~ 233 (657)
T PTZ00186 212 SLIAVYDLGGGTFDISVLEIAG 233 (657)
T ss_pred CEEEEEECCCCeEEEEEEEEeC
Confidence 4699999999999999999954
No 94
>PRK13410 molecular chaperone DnaK; Provisional
Probab=23.95 E-value=1.7e+02 Score=33.05 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.1
Q ss_pred cccEEEEEcCCceeEEEEEEEcC
Q 014432 94 KGLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 94 ~G~fLAlDlGGTNlRV~~V~L~g 116 (424)
.+.+|.+|+||.+|-|.++++.+
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~ 208 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGN 208 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcC
Confidence 34699999999999999999954
No 95
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=23.88 E-value=1.8e+02 Score=23.92 Aligned_cols=35 Identities=6% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 014432 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (424)
Q Consensus 39 ~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 73 (424)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 56667777778999999999999999999999764
No 96
>CHL00094 dnaK heat shock protein 70
Probab=23.68 E-value=1.6e+02 Score=32.60 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.5
Q ss_pred ccEEEEEcCCceeEEEEEEEcC
Q 014432 95 GLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g 116 (424)
+.+|.+|+||.+|-|.++++.+
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~ 208 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGD 208 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcC
Confidence 4689999999999999999854
No 97
>PF13941 MutL: MutL protein
Probab=23.20 E-value=96 Score=33.48 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=32.3
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHHHHHHh
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVA 156 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~ 156 (424)
.||++|+|.|.-|+.+|++.......+-+-. -|-++. + .+...=+-+++.+.-+
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~----apTTv~--~-~Dv~~G~~~A~~~l~~ 54 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQAE----APTTVE--P-GDVTIGLNNALEQLEE 54 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEEEe----CCCCcC--c-ccHHHHHHHHHHHHHH
Confidence 4899999999999999996554444443322 233331 1 3444445555555433
No 98
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=23.15 E-value=74 Score=31.83 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.5
Q ss_pred cEEEEEcCCceeEEEEEE
Q 014432 96 LFYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~ 113 (424)
..|.+|+|||+.-|++|.
T Consensus 78 ~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE
T ss_pred CEEEEeCCCCEEEEEEEE
Confidence 589999999999999984
No 99
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=22.79 E-value=1.9e+02 Score=32.01 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.8
Q ss_pred ccEEEEEcCCceeEEEEEEEcC
Q 014432 95 GLFYALDLGGTNFRVLRVQLGG 116 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~~V~L~g 116 (424)
..+|.+|+||.++-|.++++.+
T Consensus 185 ~~vlV~D~GggT~dvsv~~~~~ 206 (627)
T PRK00290 185 EKILVYDLGGGTFDVSILEIGD 206 (627)
T ss_pred CEEEEEECCCCeEEEEEEEEeC
Confidence 5699999999999999999954
No 100
>CHL00038 psbL photosystem II protein L
Probab=22.70 E-value=91 Score=22.12 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.4
Q ss_pred CCCCCcceeeeecccccHHHHHHHHHHHHh
Q 014432 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRMA 335 (424)
Q Consensus 306 S~nPG~q~fEKmiSG~YLGElvRliLl~l~ 335 (424)
.+||.+|+-|-=-...|+|-++=.++--+.
T Consensus 3 ~~NPN~q~VELNRTSLy~GLLlifvl~vlf 32 (38)
T CHL00038 3 QSNPNKQNVELNRTSLYWGLLLIFVLAVLF 32 (38)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 569999999999999999999877766554
No 101
>PRK11677 hypothetical protein; Provisional
Probab=22.45 E-value=2.4e+02 Score=25.45 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=10.7
Q ss_pred eehhhHHHHHHHHHHHhh
Q 014432 9 TVVCAAAVCAAAALVVRR 26 (424)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (424)
+++++.++++++++..+.
T Consensus 6 a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345566666667666554
No 102
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=22.40 E-value=2e+02 Score=23.79 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 014432 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (424)
Q Consensus 38 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 73 (424)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777788999999999999999999999763
No 103
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=22.28 E-value=2.6e+02 Score=30.17 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=40.8
Q ss_pred cEEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCcccc-ccC-chhhHHHHHHHHHHHHhh
Q 014432 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLM-TGS-SHELFDYIAAALAKFVAT 157 (424)
Q Consensus 96 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~-~~~-~~~LFd~IA~~i~~fl~~ 157 (424)
.|=+||+|-.++|..+++..+.....+....+...+.+.+. +|. .++=.+-..+++..|.+.
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 46699999999999999986533333333444566765542 222 346667777788877654
No 104
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.16 E-value=2.8e+02 Score=24.47 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=11.0
Q ss_pred ehhhHHHHHHHHHHHhhhhc
Q 014432 10 VVCAAAVCAAAALVVRRRMK 29 (424)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (424)
.+++.++.+++++..+.-.+
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34555666666665554433
No 105
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=1.5e+02 Score=32.87 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.9
Q ss_pred ccccEEEEEcCCceeEEEEEEEc
Q 014432 93 EKGLFYALDLGGTNFRVLRVQLG 115 (424)
Q Consensus 93 E~G~fLAlDlGGTNlRV~~V~L~ 115 (424)
..+.+|+.||||.+|=|.+|++.
T Consensus 170 ~~~~vlV~DlGGGTfDvSll~~~ 192 (579)
T COG0443 170 KEKTVLVYDLGGGTFDVSLLEIG 192 (579)
T ss_pred CCcEEEEEEcCCCCEEEEEEEEc
Confidence 45689999999999999999997
No 106
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=22.00 E-value=3.4e+02 Score=25.29 Aligned_cols=69 Identities=26% Similarity=0.532 Sum_probs=48.3
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCCcceeecccccCCCC----cccc-cEEEEEcCCceeEEEEEEEcCC
Q 014432 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGTNFRVLRVQLGGR 117 (424)
Q Consensus 47 ~f~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MLPSyv~~lP~G----~E~G-~fLAlDlGGTNlRV~~V~L~g~ 117 (424)
.+.++.+.|.+ |++.-.+||-+|...+.++++..=-|-|.. |+| ++.| .|+++..||+ .-+-.+++.|+
T Consensus 64 lLgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~~-~~~~~~~~~g~ 140 (162)
T COG1546 64 LLGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGGE-AITIRVNFGGD 140 (162)
T ss_pred HhCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCCc-eEEEEEEcCCC
Confidence 45677777754 688899999999877666777777777764 884 3567 4888998444 33445556554
No 107
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=21.51 E-value=1.8e+02 Score=29.29 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.9
Q ss_pred EEEEEcCCceeEEEEEE
Q 014432 97 FYALDLGGTNFRVLRVQ 113 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~ 113 (424)
.++||+|||..+++...
T Consensus 2 ~iGiDiGgT~~Kiv~~~ 18 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEE 18 (279)
T ss_pred eEEEEeCcceEEEEEEc
Confidence 58999999999998864
No 108
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=21.42 E-value=2.1e+02 Score=23.67 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 014432 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (424)
Q Consensus 38 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 73 (424)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 6 ~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 6 ADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 467778878888999999999999999999999763
No 109
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=21.35 E-value=1e+02 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.588 Sum_probs=17.2
Q ss_pred ccEEEEEcCCceeEEE-EEEEc
Q 014432 95 GLFYALDLGGTNFRVL-RVQLG 115 (424)
Q Consensus 95 G~fLAlDlGGTNlRV~-~V~L~ 115 (424)
+.+.+.|+||.++|+. .|...
T Consensus 36 ~~~~vFnI~GN~yRlI~~I~f~ 57 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLIAKIDFE 57 (76)
T ss_pred CCEEEEEcCCCcEEEEEEEEeC
Confidence 6799999999999984 45553
No 110
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=3.7e+02 Score=29.78 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHcCCCceEEEEEecchHhhhcccccCCCceEEEE--eccceeeeeeccc
Q 014432 212 TKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVI--LGTGTNAAYVERA 263 (424)
Q Consensus 212 ~~al~r~~l~v~v~aivNDTVaTLla~ay~~~~~~IGlI--lGTGtNacY~E~~ 263 (424)
.+|....|++ ++.++|+.+|..++-.........=+| +|-||-=+=+..+
T Consensus 140 ~~A~~iaGl~--vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~ 191 (579)
T COG0443 140 KDAARIAGLN--VLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEI 191 (579)
T ss_pred HHHHHHcCCC--eEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEE
Confidence 3444444554 559999999999987666532222223 6777766655554
No 111
>PRK03661 hypothetical protein; Validated
Probab=20.59 E-value=3.3e+02 Score=25.19 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=40.2
Q ss_pred HHcCCCHHHHHH---HHHHHHHHHHHhhccCCCCCcceeecccccCCCC----cccc-cEEEEEcCC
Q 014432 46 EKCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGG 104 (424)
Q Consensus 46 ~~f~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MLPSyv~~lP~G----~E~G-~fLAlDlGG 104 (424)
+.+.+|.+.|++ ++..-..+|-+|....-++++..--|-+.. |+| .+.| .|++|...+
T Consensus 63 ~lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~~ 128 (164)
T PRK03661 63 QMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASAS 128 (164)
T ss_pred HHcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeCC
Confidence 345688888877 788888888888865445676666666653 654 4567 488887643
No 112
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=1.7e+02 Score=33.64 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=30.7
Q ss_pred EEEEEcCCceeEEEEEEEcCCcceeEEEEeeeeccCccccccCchhhHHHHHHHH
Q 014432 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151 (424)
Q Consensus 97 fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i 151 (424)
.+++|+|.-+++|++|+. |-.-.++-....+-.-|.-+.-..++.+|.-=|..|
T Consensus 24 vmsVDlGse~~Kv~vVkP-GvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~m 77 (902)
T KOG0104|consen 24 VMSVDLGSEWIKVAVVKP-GVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASM 77 (902)
T ss_pred heeeecccceeEEEEecC-CCCeEEeechhhcccCcceEEecCCceehhhhhhhh
Confidence 799999999999999987 321111111111223343333334566666555444
No 113
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=20.33 E-value=3.7e+02 Score=24.34 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=38.2
Q ss_pred HHcCCCHHHHHH---HHHHHHHHHHHhhccCCCCCcceeecccccCCCC----cccc-cEEEEEc
Q 014432 46 EKCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDL 102 (424)
Q Consensus 46 ~~f~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MLPSyv~~lP~G----~E~G-~fLAlDl 102 (424)
+.+.+|.+.|++ ++.....+|-+|.....++++.---|-+.. |+| .+.| .|++|-.
T Consensus 51 ~lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 51 NLLGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred HHhCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 345678887777 788888889888765545666666666643 554 4566 4788865
No 114
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=20.22 E-value=2.4e+02 Score=22.48 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc
Q 014432 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (424)
Q Consensus 38 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~ 72 (424)
.++++++.+...++..+...+.+.|.++|.+.|..
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~ 38 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKK 38 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 46677777888899999999999999999999976
Done!