BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014433
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 577 bits (1487), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/400 (68%), Positives = 328/400 (82%), Gaps = 2/400 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD P GKD+S+ +++LGTHTS+
Sbjct: 15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP DD++ DA HYD ++ +FGGFG +GK++I +INH+GEVNRARYM
Sbjct: 75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQNP +IATKT S++V VFDY+KHPSKP G C+PDLRLRGH EGYGLSW+ GHL
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDI+A PK K ++A IF H VVEDV+WHL HE LFGSV DDQ L+
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
IWD R+ + SKP SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR + LH+F
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
+SHK+E+FQV W+P NETILAS RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 566 bits (1459), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/407 (66%), Positives = 328/407 (80%), Gaps = 3/407 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD + GKDYSV ++ILGTHTS+
Sbjct: 19 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP +D++ D HYD+++ +FGGFG GK++I +INH+GEVNRARYM
Sbjct: 79 -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 137
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQN +IATKT S++V VFDY+KHPSKP G C PDLRLRGH EGYGLSW+ G+L
Sbjct: 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDINA PK ++ ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
IWD R + SKP +V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR + LH+F
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
+SHK+E+FQV W+P NETILAS RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
T+KISDFSWNP E W+I SV+EDNI+Q+WQMAEN+Y+DE+ ++P E
Sbjct: 378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASE 424
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 566 bits (1459), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/407 (66%), Positives = 328/407 (80%), Gaps = 3/407 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD + GKDYSV ++ILGTHTS+
Sbjct: 21 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 80
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP +D++ D HYD+++ +FGGFG GK++I +INH+GEVNRARYM
Sbjct: 81 -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 139
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQN +IATKT S++V VFDY+KHPSKP G C PDLRLRGH EGYGLSW+ G+L
Sbjct: 140 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 199
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDINA PK ++ ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
IWD R + SKP +V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR + LH+F
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
+SHK+E+FQV W+P NETILAS RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 379
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
T+KISDFSWNP E W+I SV+EDNI+Q+WQMAEN+Y+DE+ ++P E
Sbjct: 380 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASE 426
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/400 (67%), Positives = 324/400 (81%), Gaps = 2/400 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD + GKDYSV ++ILGTHTS+
Sbjct: 23 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 82
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A VQLP +D++ D HYD+++ +FGGFG GK++I +INH+GEVNRARYM
Sbjct: 83 -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 141
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQN +IATKT S++V VFDY+KHPSKP G C PDLRLRGH EGYGLSW+ G+L
Sbjct: 142 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 201
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD ICLWDINA PK ++ ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
IWD R + SKP +V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR + LH+F
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
+SHK+E+FQV W+P NETILAS RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 381
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
T+KISDFSWNP E W+I SV+EDNI+Q+WQMAEN+Y+DE+
Sbjct: 382 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 421
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 563 bits (1452), Expect = e-161, Method: Compositional matrix adjust.
Identities = 269/399 (67%), Positives = 323/399 (80%), Gaps = 2/399 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+ +P GKDY++ ++LGTHTS+
Sbjct: 17 RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A+V +P DD++ DA H D D+ +FGGFG GK++ +INH+GEVNRARYM
Sbjct: 77 -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYM 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQNP +IATKT S++V VFDY+KHP+KP G C+PDLRLRGH EGYGLSW+ GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD +CLWDINA PK K ++A IF H VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
IWD R+ + SKP V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR + LHTF
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
+SHK+E+FQV W+P NETILAS RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412
T+KISDFSWNP E WVI SV+EDNI+QIWQMAENIY+DE
Sbjct: 376 TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 414
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 554 bits (1428), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/399 (66%), Positives = 318/399 (79%), Gaps = 2/399 (0%)
Query: 15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
R+INEEYKIWKKNTPFLYDLV THAL+WPSLTV+WLP+ +P GKDY++ ++LGTHTS+
Sbjct: 17 RVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
E N+L++A+V +P DD++ DA H D D+ +FGGFG GK++ +INH+GEVNRARY
Sbjct: 77 -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYX 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
PQNP +IATKT S++V VFDY+KHP+KP G C+PDLRLRGH EGYGLSW+ GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LS SDD +CLWDINA PK K ++A IF H VVEDVAWHL HE LFGSV DDQ L
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
IWD R+ + SKP V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR + LHTF
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
+SHK+E+FQV W+P NETILAS RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412
T+KISDFSWNP E WVI SV+EDNI QIWQ AENIY+DE
Sbjct: 376 TAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENIYNDE 414
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 42/254 (16%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GHS+ +G+++S + + S SDD + LW N++ + +Q H V V
Sbjct: 176 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW-------NRNGQLLQTLTGHSSSVRGV 227
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
A+ + + S DD+ + +W+ + +Q++ H S VN +AF P + +A+ S
Sbjct: 228 AFSPDGQTI-ASASDDKTVKLWNRN----GQLLQTLTGHSSSVNGVAFRPDGQ-TIASAS 281
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS-----------------C 336
DKTVKL++ + L T H V+ V ++P +TI ++
Sbjct: 282 DDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT 339
Query: 337 CLGRRLMVWDLSRIDEEQTPEDAEDGPP--------ELLFIHGGHTSKISDFSWNPCEDW 388
G VW ++ + QT A D +LL GH+S + +++P +
Sbjct: 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQ 398
Query: 389 VISSVAEDNILQIW 402
I+S ++D +++W
Sbjct: 399 TIASASDDKTVKLW 412
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GHS+ +G+++S + + S SDD + LW N++ + +Q H V V
Sbjct: 299 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW-------NRNGQHLQTLTGHSSSVWGV 350
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
A+ + + S DD+ + +W+ + +Q++ H S V +AF+P + +A+ S
Sbjct: 351 AFSPDGQTI-ASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQ-TIASAS 404
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
DKTVKL++ + L T H V+ V ++P ++TI AS + + +W+ +
Sbjct: 405 DDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRN----- 456
Query: 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
+LL GH+S + +++P + I+S ++D +++W
Sbjct: 457 ----------GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 494
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 42/255 (16%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
RL HS+ G+++S + + S SDD + LW N++ + +Q H V
Sbjct: 11 RLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLW-------NRNGQLLQTLTGHSSSVWG 62
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
VA+ + + S DD+ + +W+ + +Q++ H S V +AF+P + +A+
Sbjct: 63 VAFSPDGQTI-ASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQ-TIASA 116
Query: 293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETI-----------------LAS 335
S DKTVKL++ + L T H V+ V ++P +TI L
Sbjct: 117 SDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 174
Query: 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPP--------ELLFIHGGHTSKISDFSWNPCED 387
G VW ++ + QT A D +LL GH+S + +++P +
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DG 233
Query: 388 WVISSVAEDNILQIW 402
I+S ++D +++W
Sbjct: 234 QTIASASDDKTVKLW 248
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GHS+ G+++S + + S SDD + LW N++ + +Q H V V
Sbjct: 463 LTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLW-------NRNGQLLQTLTGHSSSVRGV 514
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
A+ + + S DD+ + +W+ + +Q++ H S V +AF+P + +A+ S
Sbjct: 515 AFSPDGQTI-ASASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDGQ-TIASAS 568
Query: 294 TDKTVKLFD 302
+DKTVKL++
Sbjct: 569 SDKTVKLWN 577
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 27/226 (11%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLRHEYLFGS 245
++LSG D I L+D+ + + + VH VE V W+ +F S
Sbjct: 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117
Query: 246 VGDDQYLLIWD---LRTPSVSKPVQSVVAHQ----SEVNCLAFNPFNEWILATGSTDKTV 298
D+ L +WD L+T V ++V +H S +CL +A G+ V
Sbjct: 118 SSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL---------VAVGTRGPKV 168
Query: 299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358
+L DL+ S + H H++E+ V W+P+ + ILA+ R+ +WD+ R D
Sbjct: 169 QLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 359 AEDGPPELLF--IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
+G + H K++ + + + +V DN +++W
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLW 272
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
+ W G S S D + +WD N +L+ +F E V + ++
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTN------TLQTADVFNFEETVYSHHMSPVSTKHCL 158
Query: 244 GSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
+VG + + DL++ S S +Q H+ E+ ++++P ++ILAT S D VKL+D
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQ---GHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 303 LRKISTALHTFDSHKEEVFQV 323
+R+ S L T D H + Q
Sbjct: 216 VRRASGCLITLDQHNGKKSQA 236
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 30/173 (17%)
Query: 245 SVGDDQYLLIWDLRTPS-----VSKPVQSVV-----AHQSEVNCLAFNPFNEWILATGST 294
S G D ++++DL S K V S+ H+ V + + P + + + S
Sbjct: 61 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120
Query: 295 DKTVKLFDLRKISTA-LHTFDSHKEEVFQVGWNP--KNETILASCCLGRRLMVWDLSRID 351
DKT+K++D + TA + F+ E V+ +P ++A G ++ + DL
Sbjct: 121 DKTLKVWDTNTLQTADVFNFE---ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK--- 174
Query: 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
I GH +I SW+P D+++++ + D+ +++W +
Sbjct: 175 -----------SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 166 GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP------------K 213
G+CS L+GH E +SWS + L + S D+++ LWD+ A K
Sbjct: 176 GSCSH--ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233
Query: 214 NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256
++++E+ H G V + + +L +VG D + +W+
Sbjct: 234 SQAVESANT--AHNGKVNGLCFTSDGLHLL-TVGTDNRMRLWN 273
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA---APKNKS-LEAM 220
+ A + R HS+ + ++ ++ L SG ++ +I +WD+N +P N + L
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP------SVSKPVQSVVAHQS 274
Q + V+ +AW+ ++F S G + IWDL+ S + P + +
Sbjct: 160 QSMSSVDEVIS-LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI---KQ 215
Query: 275 EVNCLAFNPFNEWILATGS---TDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNE 330
+++ + ++P N +AT + D ++ ++DLR +T L T + H++ + + W ++E
Sbjct: 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE 275
Query: 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
+L S +++W+ PE AE
Sbjct: 276 HLLLSSGRDNTVLLWN---------PESAE 296
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 31/234 (13%)
Query: 184 LSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
L WS +++G+ D+ + L+ N A N ++ +M F H V+ V ++ + + +
Sbjct: 73 LDWSH--NNKIIAGALDNGSLELYSTNEA--NNAINSMARFSNHSSSVKTVKFNAKQDNV 128
Query: 243 FGSVGDDQYLLIWDLR----TPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGSTDK 296
S G++ + IWD+ +PS P+ + S EV LA+N + A+ +
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188
Query: 297 TVKLFDLRKISTALH-TFDSH----KEEVFQVGWNPKNETILASCCLGRR---LMVWDLS 348
++DL+ +H ++ S K+++ V W+PKN T +A+ +++WDL
Sbjct: 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
+ TP L ++ GH I W ++ ++ S DN + +W
Sbjct: 249 NAN---TP---------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 107/256 (41%), Gaps = 19/256 (7%)
Query: 112 ANGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP 170
AN + + + NH V ++ + ++A+ + E++++D +K P +P
Sbjct: 99 ANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158
Query: 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV 230
+ E L+W++ S +WD+ A K + + + G+
Sbjct: 159 GQSMSS-VDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIK 214
Query: 231 ED---VAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNP 283
+ V WH ++ + +D +LIWDLR + + P+Q++ HQ + L +
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR--NANTPLQTLNQGHQKGILSLDWCH 272
Query: 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM 343
+E +L + D TV L++ + L F + F+ + P+ + A ++
Sbjct: 273 QDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331
Query: 344 VWDL----SRIDEEQT 355
V L + +DE++T
Sbjct: 332 VQTLQNLTNTLDEQET 347
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308
D L +W L KP+ S+ S+ N L ++ N+ I+A + +++L+ + +
Sbjct: 44 DSSLELWSLLAADSEKPIASLQV-DSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANN 101
Query: 309 ALHT---FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPE 365
A+++ F +H V V +N K + +LAS + +WD+++ E +P + P
Sbjct: 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE--SPSNYTPLTPG 159
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
++ +WN V +S N IW +
Sbjct: 160 QSM---SSVDEVISLAWNQSLAHVFASAGSSNFASIWDL 195
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 81/312 (25%)
Query: 164 LDGACSPDLRLRGHSTEGYGLSW---SKFKEGH---------------LLSGSDDAQICL 205
L +C D R+R TEG SW S EGH L S S DA C+
Sbjct: 30 LLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP 265
W N E + + HE V+ VAW L + D+ + +W++ +
Sbjct: 88 WKKN----QDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYEC 142
Query: 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVG 324
V + +H +V + ++P E +LA+ S D TVKL+ + T + H+ V+ +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 325 WNPKNETILASCCLGRRLMVWDLSRIDEEQT----------------------------- 355
++P + LASC R + +W EQ
Sbjct: 202 FDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 356 -------------------PEDAEDGPPELLF-----IHGGHTSKISDFSWNPCEDWVIS 391
ED P + F +H H+ ++ +WNP E +++
Sbjct: 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 392 SVAEDNILQIWQ 403
S ++D + W+
Sbjct: 321 SCSDDGEVAFWK 332
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 77/240 (32%), Gaps = 69/240 (28%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLL-SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L GH E ++W+ G+LL + S D + +W+++ + E + + H V+
Sbjct: 101 LEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVD---EEDEYECVSVLNSHTQDVKH 155
Query: 233 VAWHLRHEYL-------------------------------------------FGSVGDD 249
V WH E L S DD
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215
Query: 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE-------WI-----LATGSTDKT 297
+ + IW P + V + S + F+ W LAT D
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA 275
Query: 298 VKLFD--------LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349
+++F S H +H ++V V WNPK +LASC + W R
Sbjct: 276 IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL--FIHGGHTSKISDF 380
+ WNP T+LASC RR+ +W +G + + GH +
Sbjct: 22 LAWNPAG-TLLASCGGDRRIRIW-------------GTEGDSWICKSVLSEGHQRTVRKV 67
Query: 381 SWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
+W+PC ++ ++S + D IW+ ++ + L G E+
Sbjct: 68 AWSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHEN 106
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 141 IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200
+A + + +F+ S + DG L GH + +E L++GS D
Sbjct: 123 VACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260
LWD+ + S+ + H V ++ + + +F S D + +WDLR
Sbjct: 180 QTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI- 237
Query: 261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
S+ V++ H+ ++N + F P + TGS D T +LFD+R
Sbjct: 238 -TSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMR 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 197 GSDDAQICLWDINA-APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255
G D+ ++++++ A ++ ++ ++ H+G + E + DQ ++W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 256 DLRTPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
D+ T S H ++V L+ N N + +GS D TV+L+DLR S A+ T+
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 314 DSHKEEVFQVGWNPKNE 330
H+ ++ V + P +
Sbjct: 246 HGHEGDINSVKFFPDGQ 262
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
H G + +Y+P + T + ++D + + + G+ P GH+ +
Sbjct: 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGSEFPS----GHTADVLS 210
Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
LS + +SGS D + LWD+ + A++ + HEG + V + + F
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQR-F 264
Query: 244 GSVGDDQYLLIWDLRT 259
G+ DD ++D+RT
Sbjct: 265 GTGSDDGTCRLFDMRT 280
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHG--GHTSKISDFSWNPCEDWVISSVAEDNIL 399
L+ D+ + + Q P +L+ GH+ K+ W P ++W++S+ ++D L
Sbjct: 32 LLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSA-SQDGRL 90
Query: 400 QIW 402
+W
Sbjct: 91 IVW 93
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 62/313 (19%)
Query: 109 FGCANGKVQIIQQINHDGE-VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA 167
+ ++G + + Q+ GE ++ ++ + +L A T SAEV ++D +
Sbjct: 141 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQK-------- 191
Query: 168 CSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
RLR HS LSW+ + L SGS I D+ A + +
Sbjct: 192 -----RLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHHDVRVAEHH-----VATLS 238
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-----PVQSVVAHQSEVNCL 279
H V + W +L S G+D + +W PS P+Q+ HQ V +
Sbjct: 239 GHSQEVCGLRWAPDGRHL-ASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 280 AFNPFNEWILATG--STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337
A+ P+ +LATG ++D+ ++++++ L D+H +V + W+P + +++
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHG 351
Query: 338 LGR-RLMVWD---LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393
+ +L++W ++++ E + GHTS++ + +P + ++S
Sbjct: 352 FAQNQLVIWKYPTMAKVAELK-----------------GHTSRVLSLTMSP-DGATVASA 393
Query: 394 AEDNILQIWQMAE 406
A D L++W+ E
Sbjct: 394 AADETLRLWRCFE 406
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 26/226 (11%)
Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
Y L+ + G++L+ + D + LW +A L+ +Q+ + E + VAW Y
Sbjct: 117 YYLNLVDWSSGNVLAVALDNSVYLW---SASSGDILQLLQMEQPGE-YISSVAWIKEGNY 172
Query: 242 LFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
L +VG + +WD++ K ++++ +H + V L++N + IL++GS +
Sbjct: 173 L--AVGTSSAEVQLWDVQQ---QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHH 224
Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
D+R + T H +EV + W P LAS + VW P
Sbjct: 225 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW----------PSAPG 273
Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQM 404
+G L H + +W P + V+++ D ++IW +
Sbjct: 274 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYL 252
+LS S D I +W + N + + + H V DV + + F G D L
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIP-QRALRGHSHFVSDVV--ISSDGQFALSGSWDGTL 87
Query: 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT 312
+WDL T + ++ V H +V +AF+ N I++ GS DKT+KL++ +
Sbjct: 88 RLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQ 143
Query: 313 FDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371
+SH E V V ++P + I+ SC + + VW+L+ +L H
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--------------KLKTNHI 189
Query: 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
GHT ++ + +P + + +S +D +W + E
Sbjct: 190 GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG 224
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYL 252
+LS S D I +W + N + + + H V DV + + F G D L
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIP-QRALRGHSHFVSDVV--ISSDGQFALSGSWDGTL 110
Query: 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT 312
+WDL T + ++ V H +V +AF+ N I++ GS DKT+KL++ +
Sbjct: 111 RLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQ 166
Query: 313 FDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371
+SH E V V ++P + I+ SC + + VW+L+ +L H
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--------------KLKTNHI 212
Query: 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
GHT ++ + +P + + +S +D +W + E
Sbjct: 213 GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG 247
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 62/313 (19%)
Query: 109 FGCANGKVQIIQQINHDGE-VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA 167
+ ++G + + Q+ GE ++ ++ + +L A T SAEV ++D +
Sbjct: 130 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQK-------- 180
Query: 168 CSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
RLR HS LSW+ + L SGS I D+ A + +
Sbjct: 181 -----RLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHHDVRVAEHH-----VATLS 227
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-----PVQSVVAHQSEVNCL 279
H V + W +L S G+D + +W PS P+Q+ HQ V +
Sbjct: 228 GHSQEVCGLRWAPDGRHL-ASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 280 AFNPFNEWILATG--STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337
A+ P+ +LATG ++D+ ++++++ L D+H +V + W+P + +++
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHG 340
Query: 338 LGR-RLMVWD---LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393
+ +L++W ++++ E + GHTS++ + +P + ++S
Sbjct: 341 FAQNQLVIWKYPTMAKVAELK-----------------GHTSRVLSLTMSP-DGATVASA 382
Query: 394 AEDNILQIWQMAE 406
A D L++W+ E
Sbjct: 383 AADETLRLWRCFE 395
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 26/226 (11%)
Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
Y L+ + G++L+ + D + LW +A L+ +Q+ + E + VAW Y
Sbjct: 106 YYLNLVDWSSGNVLAVALDNSVYLW---SASSGDILQLLQMEQPGE-YISSVAWIKEGNY 161
Query: 242 LFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
L +VG + +WD++ K ++++ +H + V L++N + IL++GS +
Sbjct: 162 L--AVGTSSAEVQLWDVQQ---QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHH 213
Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
D+R + T H +EV + W P LAS + VW P
Sbjct: 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW----------PSAPG 262
Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQM 404
+G L H + +W P + V+++ D ++IW +
Sbjct: 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L+GH+ Y L +F H++SGS D I +WD+ + H+ + +
Sbjct: 275 LQGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGM 325
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
L+ L S D + IWD++T + +Q HQS V CL FN + T S
Sbjct: 326 --ELKDNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSS 379
Query: 294 TDKTVKLFDLR 304
D TVKL+DL+
Sbjct: 380 DDGTVKLWDLK 390
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 33/216 (15%)
Query: 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248
E ++SGS DA + +WDI + + + H V V + R S
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETG------QCLHVLMGHVAAVRCVQYDGRRVV---SGAY 257
Query: 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308
D + +WD P + ++ H + V L F+ + + +GS D +++++D+ +
Sbjct: 258 DFMVKVWD---PETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDV-ETGN 310
Query: 309 ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368
+HT H+ G K+ IL S + +WD+ QT + GP +
Sbjct: 311 CIHTLTGHQS--LTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQ----GPNK--- 360
Query: 369 IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
H S ++ +N +++VI+S ++D +++W +
Sbjct: 361 ----HQSAVTCLQFN--KNFVITS-SDDGTVKLWDL 389
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ 267
I+ + L++ ++ K H+ V + + GS DD L +W T K ++
Sbjct: 99 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGS--DDNTLKVWSAVT---GKCLR 153
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++V H V + + I+ +GSTD+T+K+++ + +HT H V + +
Sbjct: 154 TLVGHTGGV---WSSQMRDNIIISGSTDRTLKVWNA-ETGECIHTLYGHTSTVRCMHLHE 209
Query: 328 KNETILASCCLGRRLMVWDL 347
K + S L VWD+
Sbjct: 210 KR---VVSGSRDATLRVWDI 226
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272
K ++ E + K HE V A+ Y+ + D+ + IWD + K V + H
Sbjct: 650 KAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWD---SATGKLVHTYDEH 705
Query: 273 QSEVNCLAF-NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
+VNC F N N +LATGS D +KL+DL + +T H V ++P +E
Sbjct: 706 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDE- 763
Query: 332 ILASCCLGRRLMVWDLSRIDEEQT 355
+LASC L +WD+ +E ++
Sbjct: 764 LLASCSADGTLRLWDVRSANERKS 787
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 32/168 (19%)
Query: 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ----IFKVHEGVV 230
RGH + +G+ +S L+ SDD I +W+ KN ++ Q +F+ +E +V
Sbjct: 886 RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 944
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290
V + + G G YL +++V+C +P E++ A
Sbjct: 945 LAVDNIRGLQLIAGKTGQIDYL-------------------PEAQVSCCCLSPHLEYV-A 984
Query: 291 TGSTDKTVKLFDL---RKISTALHTFDSHKEEVFQVGWNPKNETILAS 335
G D +K+ +L R S+ + HK+ V + + +T+++S
Sbjct: 985 FGDEDGAIKIIELPNNRVFSSGV----GHKKAVRHIQFTADGKTLISS 1028
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV-------AWHLRHEYLFGSV 246
L S S D + LWD+ +A + KS+ + F E EDV +W + + V
Sbjct: 765 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII--V 822
Query: 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN 285
+L++D+ T + + + H S + F+P++
Sbjct: 823 AAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPYD 859
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272
K ++ E + K HE V A+ Y+ + D+ + IWD + K V + H
Sbjct: 643 KAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWD---SATGKLVHTYDEH 698
Query: 273 QSEVNCLAF-NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
+VNC F N N +LATGS D +KL+DL + +T H V ++P +E
Sbjct: 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDE- 756
Query: 332 ILASCCLGRRLMVWDLSRIDEEQT 355
+LASC L +WD+ +E ++
Sbjct: 757 LLASCSADGTLRLWDVRSANERKS 780
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 32/168 (19%)
Query: 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ----IFKVHEGVV 230
RGH + +G+ +S L+ SDD I +W+ KN ++ Q +F+ +E +V
Sbjct: 879 RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290
V + + G G YL +++V+C +P E++ A
Sbjct: 938 LAVDNIRGLQLIAGKTGQIDYL-------------------PEAQVSCCCLSPHLEYV-A 977
Query: 291 TGSTDKTVKLFDL---RKISTALHTFDSHKEEVFQVGWNPKNETILAS 335
G D +K+ +L R S+ + HK+ V + + +T+++S
Sbjct: 978 FGDEDGAIKIIELPNNRVFSSGV----GHKKAVRHIQFTADGKTLISS 1021
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV-------AWHLRHEYLFGSV 246
L S S D + LWD+ +A + KS+ + F E EDV +W + + V
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII--V 815
Query: 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN 285
+L++D+ T + + + H S + F+P++
Sbjct: 816 AAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPYD 852
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 62/313 (19%)
Query: 109 FGCANGKVQIIQQINHDGE-VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA 167
+ ++G + + Q+ GE ++ ++ + +L A T SAEV ++D +
Sbjct: 50 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQK-------- 100
Query: 168 CSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
RLR HS LSW+ + L SGS I D+ A + +
Sbjct: 101 -----RLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHHDVRVAEHH-----VATLS 147
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-----PVQSVVAHQSEVNCL 279
H V + W +L S G+D + +W PS P+Q+ HQ V +
Sbjct: 148 GHSQEVCGLRWAPDGRHL-ASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 280 AFNPFNEWILATG--STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337
A+ P+ +LATG ++D+ ++++++ L D+H +V + W+P + +++
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHG 260
Query: 338 LGR-RLMVWD---LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393
+ +L++W ++++ E + GHTS++ + +P + ++S
Sbjct: 261 FAQNQLVIWKYPTMAKVAELK-----------------GHTSRVLSLTMSP-DGATVASA 302
Query: 394 AEDNILQIWQMAE 406
A D L++W+ E
Sbjct: 303 AADETLRLWRCFE 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
Y L+ + G++L+ + D + LW +A L+ +Q+ + E + VAW Y
Sbjct: 26 YYLNLVDWSSGNVLAVALDNSVYLW---SASSGDILQLLQMEQPGE-YISSVAWIKEGNY 81
Query: 242 LFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
L +VG + +WD++ K ++++ +H + V L++N + IL++GS +
Sbjct: 82 L--AVGTSSAEVQLWDVQQ---QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHH 133
Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
D+R + T H +EV + W P LAS + VW P
Sbjct: 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW----------PSAPG 182
Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMAEN 407
+G L H + +W P + V+++ D ++IW +
Sbjct: 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 38/230 (16%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEA-MQIFKVHEGVVEDVAWHLRHEYLFG-SVGDDQY 251
L+SGS D + +W + +N + H V D+A L E F S D+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQENCFAISSSWDKT 99
Query: 252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR---KIST 308
L +WDLRT + K V HQSEV +AF+P N IL+ G+ ++ +KL+++ K S+
Sbjct: 100 LRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNRQILSAGA-EREIKLWNILGECKFSS 155
Query: 309 ALHTFDSHKEEVFQVGWNPKNETI---------LASCCLGRRLMVWDLSRIDEEQTPEDA 359
A ++H + V V ++P ++ AS RL VW+ +
Sbjct: 156 AEK--ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---------- 203
Query: 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409
++ + H S ++ S +P + I++ +D L IW + Y
Sbjct: 204 -----QIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTY 247
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP 265
WD N + + FK HE V ++ +Y+ + G D+ LLIWD+ +++ P
Sbjct: 192 WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDIL--NLTYP 248
Query: 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-LHTFDSH--KEEVFQ 322
+ A S +N +AFNP +W+ A G TD+ VK+F+L S A + T ++ + Q
Sbjct: 249 QREFDAG-STINQIAFNPKLQWV-AVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305
Query: 323 VGWNPKNETILASCCLGRRLMV 344
G NP+ T LA LG++L
Sbjct: 306 KGKNPQC-TSLAWNALGKKLFA 326
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ----IFKVHEG 228
R GH +E Y +++S +LS + +I LW+I K S E + V
Sbjct: 113 RFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Query: 229 VVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287
+ A ++ F SVG D L +W+ + + AH+S VN L+ +P ++
Sbjct: 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSISPNGKY 227
Query: 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328
I ATG DK + ++D+ ++ FD+ + Q+ +NPK
Sbjct: 228 I-ATGGKDKKLLIWDILNLTYPQREFDA-GSTINQIAFNPK 266
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 289 LATGSTDKTVKLFDLRKISTALHT-FDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
LAT S+D++VK+FD+R L H+ V+QV W +P ILASC R++++W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW- 86
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP 384
E+G E H GH S ++ W P
Sbjct: 87 -----------REENGTWEKSHEHAGHDSSVNSVCWAP 113
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 60/339 (17%)
Query: 53 REEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCA 112
R PPG + + G+ +NE NY+ L + D + D D GGF
Sbjct: 38 RPLPPGSLQTAETFATGSW--DNEENYISLWSI--------GDFGNLDSD----GGF--- 80
Query: 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLD------- 165
G Q++ I H G+V ++ Q + A+ T V++ HP+ L
Sbjct: 81 EGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFL----HHPNNQTLSVNQQWTT 136
Query: 166 -----GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM 220
G SP S G+ + + +++ +D +I L+ + ++++
Sbjct: 137 AHYHTGPGSPSYS----SAPCTGVVCNNPE---IVTVGEDGRINLFRADHKEAVRTIDNA 189
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVVAHQSEVNC 278
+H V + E L +V L IWD R ++P Q S+ + ++C
Sbjct: 190 DSSTLHA-----VTFLRTPEIL--TVNSIGQLKIWDFRQQG-NEPSQILSLTGDRVPLHC 241
Query: 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338
+ +P + ++ATG D + ++D+R+ + + +H+ E+++V ++P N L +C
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSE 301
Query: 339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377
L WD S PE + LF GG +S
Sbjct: 302 DGSLWHWDAS----TDVPEKSS------LFHQGGRSSTF 330
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
+AT S+DKT+K+F++ + + T H+ V++V W +PK TILASC ++M+W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW- 82
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
E+G + +H H++ ++ W P E
Sbjct: 83 -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 71/291 (24%)
Query: 159 PSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218
P K L G SP R+ H ++S S+DA I +WD ++L
Sbjct: 99 PEKYALSGHRSPVTRVIFHPVFSV-----------MVSASEDATIKVWDYETGDFERTL- 146
Query: 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278
K H V+D+++ + L S D + +WD + ++++ H V+
Sbjct: 147 -----KGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC---IRTMHGHDHNVSS 197
Query: 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338
++ P + I++ S DKT+K++++ + + TF H+E V V N ++ T++ASC
Sbjct: 198 VSIMPNGDHIVS-ASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSN 254
Query: 339 GRRLMVW---------------------------DLSRIDEEQTPEDAEDGPPELLFIHG 371
+ + VW S I E E + G P + G
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 372 GH--TSKISDFSWNPC-------EDWV-----------ISSVAEDNILQIW 402
T K+ D S C ++WV I S A+D L++W
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
LLSGS D I +WD++ + H+ V V +H +++ S DD+ L
Sbjct: 311 LLSGSRDKTIKMWDVSTGM------CLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLR 363
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
+WD + K + AH+ V L F+ +++ TGS D+TVK+++ R
Sbjct: 364 VWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWECR 410
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330
AH + +A +P ++L+ GS D TVKL++ TF+ H+ V V +NPK+
Sbjct: 95 AHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 331 TILASCCLGRRLMVWDLSR 349
+ AS CL R + VW L +
Sbjct: 154 STFASGCLDRTVKVWSLGQ 172
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
+W L TP+ + + VN + + P ++ + T S D T+K++D + S
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
+ T + H V ++P I++ G L +W+ S E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
LAT S+DKT+K+F++ + + T H+ V++V W +PK TILASC ++++W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 82
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
E+G + +H H++ ++ W P E
Sbjct: 83 -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330
AH + +A +P ++L+ GS D TVKL++ TF+ H+ V V +NPK+
Sbjct: 95 AHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 331 TILASCCLGRRLMVWDLSR 349
+ AS CL R + VW L +
Sbjct: 154 STFASGCLDRTVKVWSLGQ 172
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
+W L TP+ + + VN + + P ++ + T S D T+K++D + S
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
+ T + H V ++P I++ G L +W+ S E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330
AH + +A +P ++L+ GS D TVKL++ TF+ H+ V V +NPK+
Sbjct: 95 AHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 331 TILASCCLGRRLMVWDLSR 349
+ AS CL R + VW L +
Sbjct: 154 STFASGCLDRTVKVWSLGQ 172
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
+W L TP+ + + VN + + P ++ + T S D T+K++D + S
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
+ T + H V ++P I++ G L +W+ S E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330
AH + +A +P ++L+ GS D TVKL++ TF+ H+ V V +NPK+
Sbjct: 95 AHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 331 TILASCCLGRRLMVWDLSR 349
+ AS CL R + VW L +
Sbjct: 154 STFASGCLDRTVKVWSLGQ 172
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
++LSGSDD + LW+ N +LE Q F+ HE V VA++ + F S D+ +
Sbjct: 111 YVLSGSDDLTVKLWN---WENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
+W L TP+ + + VN + + P ++ + T S D T+K++D + S
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
+ T + H V ++P I++ G L +W+ S E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
LAT S+DKT+K+F++ + + T H+ V++V W +PK TILASC ++++W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 84
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
E+G + +H H++ ++ W P E
Sbjct: 85 -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 113
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 166 GACSPDLRLRGHSTEGY-----GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM 220
GA + L LRG + EG+ L+ S + LLS S D + W + + + +
Sbjct: 1 GASNEVLVLRG-TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-V 58
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
+ FK H +V+D Y S D+ L +WD+ T + Q V H+S+V +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVD 114
Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILAS 335
+ I+ +GS DKT+K++ ++ L T H + V QV P + + S
Sbjct: 115 IDKKASMII-SGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395
+ + W+L++ E FI GH S I+ + +P + +I+S +
Sbjct: 172 AGNDKMVKAWNLNQFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGK 216
Query: 396 DNILQIWQMA 405
D + +W +A
Sbjct: 217 DGEIMLWNLA 226
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 97/240 (40%), Gaps = 34/240 (14%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM--------QIFK 224
R GH ++ + K K ++SGS D I +W I K + L + Q+
Sbjct: 102 RFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRV 156
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284
V +D S G+D+ + W+L + + H S +N L +P
Sbjct: 157 VPNEKADD------DSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASP- 206
Query: 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
+ ++A+ D + L++L A++T S ++EVF + ++P + A+ G ++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAA-KKAMYTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
D + +D PE +W+ + + + DN++++WQ+
Sbjct: 265 LDPQYL--------VDDLRPEFAGYSAAAEPHAVSLAWS-ADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 166 GACSPDLRLRGHSTEGY-----GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM 220
GA + L LRG + EG+ L+ S + LLS S D + W + + + +
Sbjct: 1 GASNEVLVLRG-TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-V 58
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
+ FK H +V+D Y S D+ L +WD+ T + Q V H+S+V +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVD 114
Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILAS 335
+ I+ +GS DKT+K++ ++ L T H + V QV P + + S
Sbjct: 115 IDKKASMII-SGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395
+ + W+L++ E FI GH S I+ + +P + +I+S +
Sbjct: 172 AGNDKMVKAWNLNQFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGK 216
Query: 396 DNILQIWQMA 405
D + +W +A
Sbjct: 217 DGEIMLWNLA 226
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 34/240 (14%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM--------QIFK 224
R GH ++ + K K ++SGS D I +W I K + L + Q+
Sbjct: 102 RFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRV 156
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284
V +D S G+D+ + W+L + + H S +N L +P
Sbjct: 157 VPNEKADD------DSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASP- 206
Query: 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
+ ++A+ D + L++L A++T S ++EVF + ++P + A+ G ++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAA-KKAMYTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
D + ++ PE A + +S +W+ + + + DN++++WQ+
Sbjct: 265 LDPQYLVDDLRPEFAG-------YSKAAEPHAVS-LAWS-ADGQTLFAGYTDNVIRVWQV 315
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
LAT S+DKT+K+F++ + + T H+ V++V W +PK TILASC ++++W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 82
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
E+G + +H H++ ++ W P E
Sbjct: 83 -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GH+ L+ S + LLS S D + W + + + ++ FK H +V+D
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDC 65
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
Y S D+ L +WD+ T + Q V H+S+V + + I+ +GS
Sbjct: 66 TLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGS 120
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLS 348
DKT+K++ ++ L T H + V QV P + + S + + W+L+
Sbjct: 121 RDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
+ E FI GH S I+ + +P + +I+S +D + +W +A
Sbjct: 179 QFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA 220
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 34/240 (14%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM--------QIFK 224
R GH ++ + K K ++SGS D I +W I K + L + Q+
Sbjct: 96 RFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRV 150
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284
V +D S G+D+ + W+L + + H S +N L +P
Sbjct: 151 VPNEKADD------DSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASP- 200
Query: 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
+ ++A+ D + L++L A++T S ++EVF + ++P + A+ G ++
Sbjct: 201 DGTLIASAGKDGEIMLWNLAA-KKAMYTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFS 258
Query: 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
D + ++ PE A + +S +W+ + + + DN++++WQ+
Sbjct: 259 LDPQYLVDDLRPEFAG-------YSKAAEPHAVS-LAWS-ADGQTLFAGYTDNVIRVWQV 309
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GH+ L+ S + LLS S D + W + + + ++ FK H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDC 71
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
Y S D+ L +WD+ T + Q V H+S+V + + I+ +GS
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGS 126
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLS 348
DKT+K++ ++ L T H + V QV P + + S + + W+L+
Sbjct: 127 RDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
+ E FI GH S I+ + +P + +I+S +D + +W +A
Sbjct: 185 QFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA 226
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 34/240 (14%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM--------QIFK 224
R GH ++ + K K ++SGS D I +W I K + L + Q+
Sbjct: 102 RFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRV 156
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284
V +D S G+D+ + W+L + + H S +N L +P
Sbjct: 157 VPNEKADD------DSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASP- 206
Query: 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
+ ++A+ D + L++L A++T S ++EVF + ++P + A+ G ++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAA-KKAMYTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
D + ++ PE A + +S +W+ + + + DN++++WQ+
Sbjct: 265 LDPQYLVDDLRPEFAG-------YSKAAEPHAVS-LAWS-ADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GH+ L+ S + LLS S D + W + + + ++ FK H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDC 71
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
Y S D+ L +WD+ T + Q V H+S+V + + I+ +GS
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGS 126
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLS 348
DKT+K++ ++ L T H + V QV P + + S + + W+L+
Sbjct: 127 RDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
+ E FI GH S I+ + +P + +I+S +D + +W +A
Sbjct: 185 QFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA 226
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM--------QIFK 224
R GH ++ + K K ++SGS D I +W I K + L + Q+
Sbjct: 102 RFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRV 156
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284
V +D S G+D+ + W+L + + H S +N L +P
Sbjct: 157 VPNEKADD------DSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASP- 206
Query: 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
+ ++A+ D + L++L A++T S ++EVF + ++P + A+ G ++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAA-KKAMYTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 345 WDLSRIDEEQTPEDA 359
D + ++ PE A
Sbjct: 265 LDPQYLVDDLRPEFA 279
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 41/212 (19%)
Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254
+SGS D I +WD+ + ++ H V VA + +F S +D +L+
Sbjct: 143 VSGSKDICIKVWDL------AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 255 WDLRTPSVSKPVQSVVAHQSEVNC---------LAFNPFNEWILATGSTDKTVKLFDLRK 305
WD R P KP S++ C LA++P + G + TV L D +
Sbjct: 197 WDTRCP---KPA-------SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246
Query: 306 ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPE 365
S L + H + V + ++P + LAS L V D S + E
Sbjct: 247 TSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD-SSLSE------------- 291
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDN 397
LF H + D +W+P ++++V D+
Sbjct: 292 -LFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 127 EVNRARYMPQNPFLIATKTVSAEVYVFDY--SKHPSKPPLDGACSPDLRLRGHSTEGYGL 184
++ ARY L+ ++S + K P P +G CS ++ + L
Sbjct: 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVAD---L 88
Query: 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLF 243
+W E +L SD + LW+++ +N++L + K H+ +V V+ L
Sbjct: 89 TW--VGERGILVASDSGAVELWELD---ENETLIVSKFCKYEHDDIVSTVS-VLSSGTQA 142
Query: 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL 303
S D + +WDL V + S AH ++V C+A +P + + + S D + L+D
Sbjct: 143 VSGSKDICIKVWDLAQQVV---LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Query: 304 R 304
R
Sbjct: 200 R 200
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 290 ATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWDL 347
AT S+DKT+K+F++ + + T H+ V++V W +PK TILASC ++ +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIW-- 82
Query: 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
E+G + +H H++ ++ W P E
Sbjct: 83 ----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 83 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 135
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 136 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 190
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 191 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 245
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 246 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 288
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS- 96
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 143 LIVSGSFDESV-RIWDV 158
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 72
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 85 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 137
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 138 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 192
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 193 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 247
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 248 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 290
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 42 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS- 98
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 145 LIVSGSFDESV-RIWDV 160
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 74
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQ 250
+L+ S D LWD+ +S + +Q F H + D+A F S G D+
Sbjct: 168 QILTASGDGTCALWDV------ESGQLLQSFHGHGADVLCLDLA-PSETGNTFVSGGCDK 220
Query: 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
++WD+R+ + VQ+ H+S+VN + + P + A+GS D T +L+DLR
Sbjct: 221 KAMVWDMRS---GQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLR 270
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL--- 303
G +L++ +T V K V V H + V +A+ P N+ ++A+GS D TV ++++
Sbjct: 55 GGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 304 ---RKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
+ + T + H + V V W+P + +L S ++VWD+
Sbjct: 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 25/152 (16%)
Query: 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314
WD +V+ +++ S P + TG DK V L
Sbjct: 35 WDSGFCAVNPKFMALIXEASGGGAFLVLPLGK----TGRVDKNVPLVX------------ 78
Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP-PELLFIHGGH 373
H V + W P N+ ++AS +MVW++ P+ P E + GH
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI--------PDGGLVLPLREPVITLEGH 130
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
T ++ +W+P V+ S DN++ +W +
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVED 232
+ GH+ ++W + + SGS+D + +W+I L E + + H V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
VAWH + + S G D +L+WD+ T + + V H + + ++ + ++ T
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWS-RDGALICTS 194
Query: 293 STDKTVKLFDLRKISTA------------LHTFDSHKEEVFQVGWNPKNETILASCCLGR 340
DK V++ + RK + +H + ++ G++ +E R
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE---------R 245
Query: 341 RLMVWDLSRIDE 352
++ +WD ++E
Sbjct: 246 QVALWDTKHLEE 257
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 22/216 (10%)
Query: 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY 182
H V + P N +IA+ + V V++ PL P + L GH+
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR---EPVITLEGHTKRVG 135
Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
++W + LLS D I +WD+ +L VH + V W R L
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWS-RDGAL 190
Query: 243 FGSVGDDQYLLIWDLRTPSV----------SKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
+ D+ + + + R +V ++PV +V + ++ F+ +E +A
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Query: 293 STDKTVKLFDLRKISTA----LHTFDSHKEEVFQVG 324
T + L+++ T+ L FD V+ G
Sbjct: 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
GHT+ + D +W P D VI+S +ED + +W++ +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 174
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 229
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 230 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 272
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS- 80
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 127 LIVSGSFDESV-RIWDV 142
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 56
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL--- 303
G +L++ +T V K V V H + V +A+ P N+ ++A+GS D TV ++++
Sbjct: 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 304 ---RKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
+ + T + H + V V W+P + +L S ++VWD+
Sbjct: 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 24/190 (12%)
Query: 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVEDVA 234
GH+ ++W + + SGS+D + +W+I L E + + H V VA
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST 294
WH + + S G D +L+WD+ T + + V H + + ++ + ++ T
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWS-RDGALICTSCR 196
Query: 295 DKTVKLFDLRKISTA------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342
DK V++ + RK + +H + ++ G++ +E R++
Sbjct: 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE---------RQV 247
Query: 343 MVWDLSRIDE 352
+WD ++E
Sbjct: 248 ALWDTKHLEE 257
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 25/152 (16%)
Query: 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314
WD +V+ +++ S P + TG DK V L
Sbjct: 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGK----TGRVDKNVPLVC------------ 78
Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP-PELLFIHGGH 373
H V + W P N+ ++AS +MVW++ P+ P E + GH
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI--------PDGGLVLPLREPVITLEGH 130
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
T ++ +W+P V+ S DN++ +W +
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 22/216 (10%)
Query: 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY 182
H V + P N +IA+ + V V++ PL P + L GH+
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR---EPVITLEGHTKRVG 135
Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
++W + LLS D I +WD+ +L VH + V W R L
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWS-RDGAL 190
Query: 243 FGSVGDDQYLLIWDLRTPSV----------SKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
+ D+ + + + R +V ++PV +V + ++ F+ +E +A
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Query: 293 STDKTVKLFDLRKISTA----LHTFDSHKEEVFQVG 324
T + L+++ T+ L FD V+ G
Sbjct: 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
GHT+ + D +W P D VI+S +ED + +W++ +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 17/193 (8%)
Query: 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203
+T ++VF K P P + C+ ++ T+ ++W E +L SD +
Sbjct: 66 RTWGGSIWVF---KDPEGAPNESLCTAGVQTEAGVTD---VAW--VSEKGILVASDSGAV 117
Query: 204 CLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262
LW+I + +SL + K H+ +V+ ++ S G D + +WDL +V
Sbjct: 118 ELWEI---LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV-SGGKDFSVKVWDLSQKAV 173
Query: 263 SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT-FDSHKEEVF 321
++S AH SEVNC+A P + I + D + L+D RK A F +
Sbjct: 174 ---LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT 230
Query: 322 QVGWNPKNETILA 334
V W+P+ + A
Sbjct: 231 SVTWHPEKDDTFA 243
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE 286
E V DVAW L S D + +W++ S V ++ + + F++
Sbjct: 94 EAGVTDVAWVSEKGILVAS--DSGAVELWEILEKE-SLLVNKFAKYEHDDIVKTLSVFSD 150
Query: 287 WILA-TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW 345
A +G D +VK++DL + L ++++H EV V P +TI SC R+++W
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 346 DLSR 349
D +
Sbjct: 210 DTRK 213
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 174
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 229
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 230 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 272
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS- 80
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 127 LIVSGSFDESV-RIWDV 142
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 56
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 60 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 112
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 113 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 167
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 168 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 222
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 223 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 265
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 17 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 74
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 75 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 120 LIVSGSFDESV-RIWDV 135
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 49
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 66 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 118
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 119 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 173
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 174 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 228
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 229 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 271
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 23 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 80
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 81 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 126 LIVSGSFDESV-RIWDV 141
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 55
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 61 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 113
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 114 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 168
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 223
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 224 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 266
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 75
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 76 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 121 LIVSGSFDESV-RIWDV 136
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 50
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 62 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 114
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 115 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 169
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 170 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 224
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 225 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 267
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 19 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 76
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 77 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 122 LIVSGSFDESV-RIWDV 137
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 51
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272
K ++ E + K HE V A+ ++ + D+ + IW+ T + V + H
Sbjct: 649 KAETGEKLLEIKAHEDEVLCCAFSTDDRFI-ATCSVDKKVKIWNSMTGEL---VHTYDEH 704
Query: 273 QSEVNCLAF-NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
+VNC F N + +LATGS+D +KL+DL + +T H V ++P ++
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSP-DDK 762
Query: 332 ILASCCLGRRLMVWDLSRIDEEQT 355
+LASC L +WD + +E ++
Sbjct: 763 LLASCSADGTLKLWDATSANERKS 786
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 40/210 (19%)
Query: 106 FGGFGCANGKVQIIQQIN---------HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS 156
+ FG NG ++I++ +N H V ++ LI++ AE+ V+++
Sbjct: 981 YIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD-DAEIQVWNWQ 1039
Query: 157 KHPSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN 214
LD + LRGH + + + L K LLS S D + +W+I K
Sbjct: 1040 -------LDKC----IFLRGHQETVKDFRL----LKNSRLLSWSFDGTVKVWNIITGNKE 1084
Query: 215 KSLEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273
K F H+G V ++ + H+ F S D+ IW + P+ + H
Sbjct: 1085 KD------FVCHQGTV--LSCDISHDATKFSSTSADKTAKIWSF---DLLLPLHELRGHN 1133
Query: 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDL 303
V C AF+ + +LATG + ++++++
Sbjct: 1134 GCVRCSAFS-VDSTLLATGDDNGEIRIWNV 1162
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ----IFKVHEGVV 230
RGH + +G+ +S L+ SDD I LW+ KN ++ Q +F+ +E +V
Sbjct: 885 RGHLSWVHGVMFSP-DGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMV 943
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290
V R + + G G YL +++V+C +P ++I A
Sbjct: 944 LAVDHIRRLQLINGRTGQIDYLT-------------------EAQVSCCCLSPHLQYI-A 983
Query: 291 TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS 335
G + +++ +L F HK+ V+ + + +T+++S
Sbjct: 984 FGDENGAIEILELVNNRIFQSRF-QHKKTVWHIQFTADEKTLISS 1027
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 19/126 (15%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIF-------KVHEGVVEDVAWHLRHEYLFGSV 246
L S S D + LWD +A + KS+ Q F + E +V+ +W + V
Sbjct: 764 LASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM--V 821
Query: 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--------EWILATGSTDKTV 298
+ ++D+ T + + + H S + F+P N ++ + +TD
Sbjct: 822 AAKNKIFLFDIHTSGLLGEIHT--GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS 879
Query: 299 KLFDLR 304
K+ D R
Sbjct: 880 KVADCR 885
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 78 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 130
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 131 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 185
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 186 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 240
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 241 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 283
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 35 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 92
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 93 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 138 LIVSGSFDESV-RIWDV 153
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 67
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 61 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 113
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 114 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 168
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 223
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 224 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 266
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 75
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 76 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 121 LIVSGSFDESV-RIWDV 136
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 50
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 57 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 109
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 110 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 164
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 165 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 219
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 220 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 262
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 14 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 71
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 72 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 117 LIVSGSFDESV-RIWDV 132
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 46
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 174
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 229
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 230 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 272
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 81
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 82 -DSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 127 LIVSGSFDESV-RIWDV 142
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 56
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 269
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 78
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 79 -DSNLLVSASDDKTLKIWDVS--------------SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 124 LIVSGSFDESV-RIWDV 139
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 53
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L GH+ GY LS +F + +++ S D LWDI ++ + F H G V
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
++ LF S D +WD+R Q+ H+S++N + F P N ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 13/201 (6%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
LRGH + Y + W LLS S D ++ +WD K + + V
Sbjct: 51 LRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTC 103
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV-QSVVAHQSEVNCLAFNPFNEWILATG 292
A+ Y+ G D I++L+T + V + + H ++C F N+ + T
Sbjct: 104 AYAPSGNYV-ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTS 160
Query: 293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352
S D T L+D+ + TF H +V + P ++ C +WD+
Sbjct: 161 SGDTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-DASAKLWDVREGMC 218
Query: 353 EQTPEDAEDGPPELLFIHGGH 373
QT E + F G+
Sbjct: 219 RQTFTGHESDINAICFFPNGN 239
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T K ++++ AH V+ + FN I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 269
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 78
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 79 -DSNLLVSASDDKTLKIWDVS--------------SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 124 LIVSGSFDESV-RIWDV 139
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ SS A D +++IW
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 53
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L GH+ GY LS +F + +++ S D LWDI ++ + F H G V
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
++ LF S D +WD+R Q+ H+S++N + F P N ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 13/201 (6%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
LRGH + Y + W LLS S D ++ +WD K + + V
Sbjct: 51 LRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTC 103
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV-QSVVAHQSEVNCLAFNPFNEWILATG 292
A+ Y+ G D I++L+T + V + + H ++C F N+ + T
Sbjct: 104 AYAPSGNYV-ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTS 160
Query: 293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352
S D T L+D+ + TF H +V + P ++ C +WD+
Sbjct: 161 SGDTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-DASAKLWDVREGMC 218
Query: 353 EQTPEDAEDGPPELLFIHGGH 373
QT E + F G+
Sbjct: 219 RQTFTGHESDINAICFFPNGN 239
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L GH+ GY LS +F + +++ S D LWDI ++ + F H G V
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
++ LF S D +WD+R Q+ H+S++N + F P N ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L GH+ GY LS +F + +++ S D LWDI ++ + F H G V
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
++ LF S D +WD+R Q+ H+S++N + F P N ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L GH+ GY LS +F + +++ S D LWDI ++ + F H G V
Sbjct: 150 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 200
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
++ LF S D +WD+R Q+ H+S++N + F P N ATG
Sbjct: 201 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 255
Query: 293 STDKTVKLFDLR 304
S D T +LFDLR
Sbjct: 256 SDDATCRLFDLR 267
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 123/285 (43%), Gaps = 44/285 (15%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
H V+ ++ P +L A+ SA+ + + + K + + GH
Sbjct: 25 HTKAVSSVKFSPNGEWLAAS---SADKLIKIWGAYDGKF--------EKTISGHKLGISD 73
Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
++WS L+S SDD + +WD+++ + ++ K H V ++ + L
Sbjct: 74 VAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSN-LI 125
Query: 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL 303
S D+ + IWD++T K ++++ AH V+ + FN I+++ S D +++D
Sbjct: 126 VSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT 181
Query: 304 RKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363
D V V ++P + ILA+ L L +WD S+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK-------------- 226
Query: 364 PELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 269
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA S DK +K++ T HK + V W+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LAASSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSS 78
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 79 -DSNLLVSASDDKTLKIWDVS--------------SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 388 WVISSVAEDNILQIWQM 404
++S ++++ +IW +
Sbjct: 124 LIVSGSFDESV-RIWDV 139
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L F GHT +S ++P +W+ +S A D +++IW
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIW 53
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308
D + IWD T + + H V CL ++E ++ TGS+D TV+++D+
Sbjct: 152 DNTIKIWDKNTLECKRIL---TGHTGSVLCL---QYDERVIITGSSDSTVRVWDV-NTGE 204
Query: 309 ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368
L+T H E V + + N ++ +C R + VWD++ +P D L
Sbjct: 205 MLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMA------SPTDI-----TLRR 250
Query: 369 IHGGHTSKIS--DFSWNPCEDWVISSVAEDNILQIWQMA 405
+ GH + ++ DF +D I S + D +++W +
Sbjct: 251 VLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWNTS 284
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/267 (19%), Positives = 108/267 (40%), Gaps = 63/267 (23%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GH+ L ++ E +++GS D+ + +WD+N +L +H +
Sbjct: 169 LTGHTGSVLCL---QYDERVIITGSSDSTVRVWDVNTGEMLNTL-------IHHC---EA 215
Query: 234 AWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN---------- 282
HLR + + + D+ + +WD+ +P+ + +V H++ VN + F+
Sbjct: 216 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD 275
Query: 283 ---------------------------PFNEWILATGSTDKTVKLFDLRKISTALHTFDS 315
+ + ++ +GS+D T++L+D+ + L +
Sbjct: 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI-ECGACLRVLEG 334
Query: 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375
H+E V + ++ K + S ++ VWDL + + P A L H G
Sbjct: 335 HEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAP--AGTLCLRTLVEHSGRVF 389
Query: 376 KISDFSWNPCEDWVISSVAEDNILQIW 402
++ +++ I S + D+ + IW
Sbjct: 390 RLQ------FDEFQIVSSSHDDTILIW 410
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 96/234 (41%), Gaps = 37/234 (15%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
R+ S G+ ++ + ++SG D I +WD N +LE +I H G V
Sbjct: 125 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN------TLECKRILTGHTGSVLC 178
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
+ + E + + D + +WD+ T + + +++ H V L FN ++ T
Sbjct: 179 LQY---DERVIITGSSDSTVRVWDVNTGEM---LNTLIHHCEAVLHLR---FNNGMMVTC 229
Query: 293 STDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350
S D+++ ++D+ + T H+ V V ++ K + S R + VW+ S
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTS-- 284
Query: 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
E + GH I+ + D ++ S + DN +++W +
Sbjct: 285 ------------TCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDI 323
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 21/136 (15%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L GH G++ ++++ ++SGS D I LWDI +++ + HE +V +
Sbjct: 292 LNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDIECGA------CLRVLEGHEELVRCI 342
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDL------RTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287
+ + S D + +WDL R P+ + ++++V H V L F+ F
Sbjct: 343 RFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ-- 397
Query: 288 ILATGSTDKTVKLFDL 303
+ + S D T+ ++D
Sbjct: 398 -IVSSSHDDTILIWDF 412
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T ++++ AH V+ + FN I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGMC---LKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNMVYIWNL 269
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS- 77
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 388 WVISSVAEDNILQIWQMAENI 408
++S ++++ +IW + +
Sbjct: 124 LIVSGSFDESV-RIWDVKTGM 143
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L+F GHT +S ++P +W+ SS A D +++IW
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 53
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
+ GH ++WS L+S SDD + +WD+++ + ++ K H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
++ + L S D+ + IWD++T ++++ AH V+ + FN I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGMC---LKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
D +++D D V V ++P + ILA+ L L +WD S+
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ L + GH ++ ++FS + W++S +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNMVYIWNL 269
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
++ H V+ + F+P EW LA+ S DK +K++ T HK + V W+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS- 77
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
+ +L S + L +WD+S + L GH++ + ++NP +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 388 WVISSVAEDNILQIWQMAENI 408
++S ++++ +IW + +
Sbjct: 124 LIVSGSFDESV-RIWDVKTGM 143
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
L+F GHT +S ++P +W+ SS A D +++IW
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIW 53
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF 301
+ +D+ + IWD+ + +Q H+ ++ L + P + L +GS D+TV+++
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQ---GHEQDIYSLDYFPSGDK-LVSGSGDRTVRIW 192
Query: 302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD------LSRIDEE-Q 354
DLR +L S ++ V V +P + +A+ L R + VWD + R+D E +
Sbjct: 193 DLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 355 TPEDAEDGPPELLFIHGGHT 374
+ +D ++F G +
Sbjct: 251 SGTGHKDSVYSVVFTRDGQS 270
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 42/222 (18%)
Query: 174 LRGHSTEGYGLSWSKFKEG-HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
L+GH + Y L + F G L+SGS D + +WD+ ++ + + +GV
Sbjct: 161 LQGHEQDIYSLDY--FPSGDKLVSGSGDRTVRIWDL------RTGQCSLTLSIEDGVTTV 212
Query: 233 VAWHLRHEYL-FGSVGDDQYLLIWDLRTPSVSKPV----QSVVAHQSEVNCLAFNPFNEW 287
+Y+ GS+ D+ + +WD T + + + +S H+ V + F +
Sbjct: 213 AVSPGDGKYIAAGSL--DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 288 ILATGSTDKTVKLFDLRKIS-----------TALHTFDSHKEEVFQVGWNPKNETILASC 336
++ +GS D++VKL++L+ + T T+ HK+ V V +E IL S
Sbjct: 271 VV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SG 328
Query: 337 CLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378
R ++ W D + G P LL + G S IS
Sbjct: 329 SKDRGVLFW------------DKKSGNP-LLMLQGHRNSVIS 357
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
H+ +V +A NP +W LAT S D+TVK++DLR++ S H+ V ++P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 330 ETILAS 335
+L +
Sbjct: 309 ARLLTT 314
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 232 DVAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL 289
+AWH H GS G D +++W+ ++ + A S + L FNP N
Sbjct: 124 SLAWHPTHPSTVAVGSKGGD--IMLWNFGIKDKPTFIKGIGAGGS-ITGLKFNPLNTNQF 180
Query: 290 ATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
S + T +L D + I + D+ + + + ++ +G +++
Sbjct: 181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL---- 236
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406
+D ++ L+ H K++ + NPC DW +++ + D ++IW + +
Sbjct: 237 NMDGKE------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282
++H+ V VA + ++ + DQ + IWDLR + H+ VN F+
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 283 PFNEWILAT 291
P +L T
Sbjct: 306 PDGARLLTT 314
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
H+ +V +A NP +W LAT S D+TVK++DLR++ S H+ V ++P
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 330 ETILAS 335
+L +
Sbjct: 310 ARLLTT 315
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 232 DVAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL 289
+AWH H GS G D +++W+ ++ + A S + L FNP N
Sbjct: 125 SLAWHPTHPSTVAVGSKGGD--IMLWNFGIKDKPTFIKGIGAGGS-ITGLKFNPLNTNQF 181
Query: 290 ATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
S + T +L D + I + D+ + + + ++ +G +++
Sbjct: 182 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL---- 237
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406
+D ++ L+ H K++ + NPC DW +++ + D ++IW + +
Sbjct: 238 NMDGKE------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 283
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282
++H+ V VA + ++ + DQ + IWDLR + H+ VN F+
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 306
Query: 283 PFNEWILAT 291
P +L T
Sbjct: 307 PDGARLLTT 315
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 284 FNEWILATGSTDKTVKLFDLRKIS-TALHTFD--SHKEEVFQVGWNPKNETILASCCLGR 340
F++ ILATGSTD+ +KL ++ T + D +HK+ + V W P + ++LA+
Sbjct: 22 FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDS 80
Query: 341 RLMVWDLSRIDEEQTPEDAEDGPPE--LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI 398
+ +W E++ D E LL I GH +++ +W+ + + +++ + D
Sbjct: 81 TVSIW---------AKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKS 130
Query: 399 LQIWQMAEN 407
+ IW+ E+
Sbjct: 131 VWIWETDES 139
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 17/216 (7%)
Query: 194 LLSGSDDAQICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
L +GS D+ + +W +A + ++ + I + HE V+ VAW Y + D+ +
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSV 131
Query: 253 LIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWILATGSTDKTVKLF-DLRKISTAL 310
IW+ SV+ H +V + ++P +E +LA+ S D TV+++ D +
Sbjct: 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECV 190
Query: 311 HTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPE-DAEDGPPELL 367
+ H+ V+ ++ K E + C + VW DE+ E E P++
Sbjct: 191 AVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV- 248
Query: 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403
H ++ + +W + +I+SV D +L +++
Sbjct: 249 -----HKRQVYNVAWGF--NGLIASVGADGVLAVYE 277
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 24/223 (10%)
Query: 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-- 173
+ ++ + H + + P L A S + V ++K S D DL
Sbjct: 49 IDVLDETAHKKAIRSVAWRPHTSLLAAG---SFDSTVSIWAKEESA---DRTFEMDLLAI 102
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
+ GH E G++WS +G+ L+ S D + +W+ + + E + + + H V+
Sbjct: 103 IEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETD--ESGEEYECISVLQEHSQDVKH 158
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILAT 291
V WH E L S D + IW + V + H+ V F+ + L +
Sbjct: 159 VIWH-PSEALLASSSYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216
Query: 292 GSTDKTVKLF--------DLRKISTALHTFDSHKEEVFQVGWN 326
GS D TV+++ D ++ D HK +V+ V W
Sbjct: 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
H+ +V +A NP +W LAT S D+TVK++DLR++ S H+ V ++P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 330 ETILAS 335
+L +
Sbjct: 309 ARLLTT 314
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 22/177 (12%)
Query: 233 VAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290
+AWH H GS G D +++W+ ++ + A S + L FNP N
Sbjct: 125 LAWHPTHPSTVAVGSKGGD--IMLWNFGIKDKPTFIKGIGAGGS-ITGLKFNPLNTNQFY 181
Query: 291 TGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349
S + T +L D + I + D+ + + + ++ +G +++
Sbjct: 182 ASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL----N 237
Query: 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406
+D ++ L+ H K++ + NPC DW +++ + D ++IW + +
Sbjct: 238 MDGKE------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282
++H+ V VA + ++ + DQ + IWDLR + H+ VN F+
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 283 PFNEWILAT 291
P +L T
Sbjct: 306 PDGARLLTT 314
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
H+++V FNP +W++AT S D TVKL+DLR I H++ V +NP +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 330 ETILASC 336
T L +
Sbjct: 262 STKLLTT 268
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283
K+H+ V ++ R ++L + D + +WDLR + + H+ VN FNP
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 284 FNEWILATGSTDKTVKLF 301
+ L T ++++
Sbjct: 260 TDSTKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
H+++V FNP +W++AT S D TVKL+DLR I H++ V +NP +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 330 ETILASC 336
T L +
Sbjct: 263 STKLLTT 269
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283
K+H+ V ++ R ++L + D + +WDLR + + H+ VN FNP
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 284 FNEWILATGSTDKTVKLF 301
+ L T ++++
Sbjct: 261 TDSTKLLTTDQRNEIRVY 278
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 173 RLRGHS--TEGYGLSWSKFKEGHL-LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV 229
RL GHS E LS +G LSGS D ++ LWD+ A + F H
Sbjct: 425 RLTGHSHFVEDVVLS----SDGQFALSGSWDGELRLWDLAAGVSTRR------FVGHTKD 474
Query: 230 VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN-EWI 288
V VA+ L + + S D+ + +W+ + H+ V+C+ F+P +
Sbjct: 475 VLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533
Query: 289 LATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
+ + S DKTVK+++L T H V V +P + ++ AS +++WDL+
Sbjct: 534 IVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLA 591
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 32/221 (14%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK----VHEGVVEDVAWHLRHEYLFGSVGD 248
+ SG + +WD + + I K V G V+D++W + + +VG+
Sbjct: 73 YCASGDVHGNVRIWD--------TTQTTHILKTTIPVFSGPVKDISWDSESKRI-AAVGE 123
Query: 249 DQ----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
+ ++ ++D T + ++ +N + F P + + +GS D TV +F+
Sbjct: 124 GRERFGHVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 178
Query: 305 KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP 364
TF H + V V +NP + ++ AS +++++ +D +T +D
Sbjct: 179 PFKFK-STFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN--GVDGTKTGVFEDDSLK 234
Query: 365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
+ H+ + +W+P + I+S + D ++IW +A
Sbjct: 235 NV-----AHSGSVFGLTWSP-DGTKIASASADKTIKIWNVA 269
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI 306
G D + ++ L SVS+ V+++V H +E+ +AF+ +++AT + K +
Sbjct: 467 GQDSKVHVYKLSGASVSE-VKTIV-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524
Query: 307 STA-LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPE 365
A +++ H +V V W+P N LA+ L ++VW++++ P D
Sbjct: 525 ELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNK------PSD------H 571
Query: 366 LLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQM 404
+ I G H S ++ W + I S +D+ ++ W +
Sbjct: 572 PIIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWNV 609
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
IL +GSTD+TV+++D++K H F+ H V + KN + + L VW
Sbjct: 175 ILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 347 LSRIDEEQTPEDAEDGPPELLF-----------IHGGHTSKISDFSWNPCEDWVISSVAE 395
L + E P+ E+ L+F + GH + + S + ++ S +
Sbjct: 234 LPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGN---IVVSGSY 288
Query: 396 DNILQIWQMAE 406
DN L +W +A+
Sbjct: 289 DNTLIVWDVAQ 299
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 53/253 (20%)
Query: 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVE 231
L+L GH + L ++ G L+SGS D + +WDI +F+ H V
Sbjct: 156 LQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGC------CTHVFEGHNSTVR 207
Query: 232 --DVAWHLRHEYLFGSVGDDQYLLIWDL-------------------RTPSVSKPVQSVV 270
D+ + +Y+ D+ L +W L TP + V+
Sbjct: 208 CLDIVEYKNIKYIVTGSRDNT-LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 271 -AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329
H + V ++ + I+ +GS D T+ ++D+ + L+ H + ++ ++ +
Sbjct: 267 RGHXASVRTVSGHGN---IVVSGSYDNTLIVWDVAQ-XKCLYILSGHTDRIYSTIYDHER 322
Query: 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWV 389
+ + S + +WDL E+G EL + GHT+ + D
Sbjct: 323 KRCI-SASXDTTIRIWDL------------ENG--ELXYTLQGHTALVGLLR---LSDKF 364
Query: 390 ISSVAEDNILQIW 402
+ S A D ++ W
Sbjct: 365 LVSAAADGSIRGW 377
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 26/179 (14%)
Query: 230 VEDVAWHLRHEYLFGSVGDDQYLL-IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWI 288
V V W H+ F SVG L+ I+D+ + + ++++ HQ+ V CL++N +
Sbjct: 137 VASVKW--SHDGSFLSVGLGNGLVDIYDVESQT---KLRTMAGHQARVGCLSWN---RHV 188
Query: 289 LATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
L++GS + D+R + + T H EV + W + LAS + +W
Sbjct: 189 LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR-SDGLQLASGGNDNVVQIW--- 244
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE--DNILQIWQMA 405
DA P+ F H + + +W P + ++++ D + W A
Sbjct: 245 ---------DARSSIPK--FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 18/201 (8%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA-PKNKSLEAMQIFKVHEGVVED 232
L+GHS+E GL+W + L SG +D + +WD ++ PK H V+
Sbjct: 213 LQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-------HNAAVKA 264
Query: 233 VAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290
VAW L + G D+ + W+ T + V + S+V L ++P ++ I++
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA----GSQVTSLIWSPHSKEIMS 320
Query: 291 T-GSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
T G D + ++ T +H V +P IL++ L W +
Sbjct: 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVY 379
Query: 349 RIDEEQTPEDAEDGPPELLFI 369
D + P P + I
Sbjct: 380 DGDHVKRPIPITKTPSSSITI 400
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL 347
L+ G + V ++D+ T L T H+ V + WN +L+S + D+
Sbjct: 148 FLSVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDV 203
Query: 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
RI Q + GH+S++ +W + ++S DN++QIW +
Sbjct: 204 -RIANHQ------------IGTLQGHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDARSS 249
Query: 408 I 408
I
Sbjct: 250 I 250
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
IL +GSTD+TV+++D++K H F+ H V + KN + + L VW
Sbjct: 175 ILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 347 LSRIDEEQTPEDAEDGPPELLF-----------IHGGHTSKISDFSWNPCEDWVISSVAE 395
L + E P+ E+ L+F + GH + + S + ++ S +
Sbjct: 234 LPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN---IVVSGSY 288
Query: 396 DNILQIWQMAE 406
DN L +W +A+
Sbjct: 289 DNTLIVWDVAQ 299
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 53/253 (20%)
Query: 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVE 231
L+L GH + L ++ G L+SGS D + +WDI +F+ H V
Sbjct: 156 LQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGC------CTHVFEGHNSTVR 207
Query: 232 --DVAWHLRHEYLFGSVGDDQYLLIWDL-------------------RTPSVSKPVQSVV 270
D+ + +Y+ D+ L +W L TP + V+
Sbjct: 208 CLDIVEYKNIKYIVTGSRDNT-LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 271 -AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329
H + V ++ + I+ +GS D T+ ++D+ ++ L+ H + ++ ++ +
Sbjct: 267 RGHMASVRTVSGHGN---IVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHER 322
Query: 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWV 389
+ + S + + +WDL E+G EL++ GHT+ + D
Sbjct: 323 KRCI-SASMDTTIRIWDL------------ENG--ELMYTLQGHTALVGLLR---LSDKF 364
Query: 390 ISSVAEDNILQIW 402
+ S A D ++ W
Sbjct: 365 LVSAAADGSIRGW 377
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 34/240 (14%)
Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM--------QIFK 224
R GH ++ + K K ++SGS D I +W I K + L + Q+
Sbjct: 102 RFVGHKSDVXSVDIDK-KASXIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRV 156
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284
V +D S G+D+ + W+L + + H S +N L +P
Sbjct: 157 VPNEKADD------DSVTIISAGNDKXVKAWNLNQFQIEA---DFIGHNSNINTLTASP- 206
Query: 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
+ ++A+ D + L++L A +T S ++EVF + ++P + A+ G ++
Sbjct: 207 DGTLIASAGKDGEIXLWNLAA-KKAXYTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
D + ++ PE A + +S +W+ + + + DN++++WQ+
Sbjct: 265 LDPQYLVDDLRPEFAG-------YSKAAEPHAVS-LAWS-ADGQTLFAGYTDNVIRVWQV 315
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR--KISTALHTFDSHK 317
P + ++ V H + +N L F+P + +L + S D ++L++++ + + H+
Sbjct: 101 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 160
Query: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP 364
+EV ++ E I+ SC + L +W ++ +++ D P
Sbjct: 161 DEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR--KISTALHTFDSHK 317
P + ++ V H + +N L F+P + +L + S D ++L++++ + + H+
Sbjct: 97 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 156
Query: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP 364
+EV ++ E I+ SC + L +W ++ +++ D P
Sbjct: 157 DEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 202
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR--KISTALHTFDSHK 317
P + ++ V H + +N L F+P + +L + S D ++L++++ + + H+
Sbjct: 102 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161
Query: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP 364
+EV ++ E I+ SC + L +W ++ +++ D P
Sbjct: 162 DEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 207
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR--KISTALHTFDSHK 317
P + ++ V H + +N L F+P + +L + S D ++L++++ + + H+
Sbjct: 101 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 160
Query: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP 364
+EV ++ E I+ SC + L +W ++ +++ D P
Sbjct: 161 DEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR--KISTALHTFDSHK 317
P + ++ V H + +N L F+P + +L + S D ++L++++ + + H+
Sbjct: 138 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 197
Query: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
+EV ++ E I+ SC + L +W ++
Sbjct: 198 DEVLSADYDLLGEKIM-SCGMDHSLKLWRIN 227
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 46/190 (24%)
Query: 178 STEGYGLSWSKFKEGHLL----SGSDDAQICLWDINAAPKNKSLEA-------------- 219
S EG+ L H L S S DA I LWD+ + KS++A
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 220 -----------MQIFKVHEG-----------VVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
+ IF V G + +A+ +YL S D + I+D+
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL-ASGAIDGIINIFDI 193
Query: 258 RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK 317
T K + ++ H + L F+P ++ +L T S D +K++D++ + A T H
Sbjct: 194 AT---GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLA-GTLSGHA 248
Query: 318 EEVFQVGWNP 327
V V + P
Sbjct: 249 SWVLNVAFCP 258
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
+L SG+ D I ++DI +LE H + + + + L + DD Y+
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEG------HAMPIRSLTFSPDSQLLV-TASDDGYI 230
Query: 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT 312
I+D++ +++ + H S V +AF P ++ + S+DK+VK++D+ T +HT
Sbjct: 231 KIYDVQHANLAGTLS---GHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDV-GTRTCVHT 285
Query: 313 FDSHKEEVFQVGWNPKNETILA 334
F H+++V+ V +N I++
Sbjct: 286 FFDHQDQVWGVKYNGNGSKIVS 307
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 114/288 (39%), Gaps = 42/288 (14%)
Query: 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS 178
I +NH GEV A + NP V V+D S HP G SP +L +
Sbjct: 45 INTLNH-GEVVCAVTI-SNPTRHVYTGGKGCVKVWDIS-HP------GNKSPVSQLDCLN 95
Query: 179 TEGYGLSWSKFKEG-HLLSGSDDAQICLWDINA-APKNKSLEAMQIFKVHEGVVEDVAWH 236
+ Y S +G L+ G + + + +WD+ A P+ K+ + +A
Sbjct: 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA-----LAIS 150
Query: 237 LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK 296
+ F S D + +WDL ++ + Q H +C+ + + L TG D
Sbjct: 151 PDSKVCF-SCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISN-DGTKLWTGGLDN 205
Query: 297 TVKLFDLRK-ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
TV+ +DLR+ H F S ++F +G+ P E W L+ E
Sbjct: 206 TVRSWDLREGRQLQQHDFTS---QIFSLGYCPTGE--------------W-LAVGMESSN 247
Query: 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403
E P+ +H H S + + C W +S+ +DN+L W+
Sbjct: 248 VEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVST-GKDNLLNAWR 293
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 56/327 (17%)
Query: 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS---PDLRLRG 176
Q H G V + PQ P ATK VS S P+ CS PD RL G
Sbjct: 8 QLTGHRGWVT-SLACPQTPE-TATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH 236
HS ++ S +S S D + LW++ ++ + F H V VA+
Sbjct: 66 HSAFVSDVALSN-NGNFAVSASWDHSLRLWNL------QNGQCQYKFLGHTKDVLSVAFS 118
Query: 237 LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP-FNEWILATGSTD 295
+ + S G D L +W+++ + S AH V+C+ F+P + ++ +G D
Sbjct: 119 PDNRQIV-SGGRDNALRVWNVKGECMH--TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
VK++DL + H V V +P + ++ AS +WDL++ E
Sbjct: 176 NLVKVWDL-ATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTK--GEAL 231
Query: 356 PEDAEDGP--------------------------------PELLFIHGGHTSKISD---F 380
E A P EL H G + +
Sbjct: 232 SEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSI 291
Query: 381 SWNPCEDWVISSVAEDNILQIWQMAEN 407
+W+ + + S DN++++W ++EN
Sbjct: 292 AWSA-DGSTLYSGYTDNVIRVWGVSEN 317
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVG 324
P ++ H ++ L FN N+ +L + S D T++++ + + F H + +
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSAS 296
Query: 325 WNPKNETILASCCLGRRLMVWDLSR 349
W ++ I SC + + +W L +
Sbjct: 297 WVGDDKVI--SCSMDGSVRLWSLKQ 319
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
L++GS + W++ + +++ Q ++H G V DV W +F + D+
Sbjct: 57 LIAGSWANDVRCWEVQDS--GQTIPKAQ--QMHTGPVLDVCWSDDGSKVF-TASCDKTAK 111
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLA-FNPFNEWILATGSTDKTVKLFDLR 304
+WDL S ++ +Q + H + V + N + TGS DKT+K +D R
Sbjct: 112 MWDL---SSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
L+ H+ + F E L+ S D I LW + ++ K G+ DV
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLW-----------QNDKVIKTFSGIHNDV 186
Query: 234 AWHLR--HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILAT 291
HL + F S +D + + D T V + + H+S V C+ P N I++
Sbjct: 187 VRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYE---GHESFVYCIKLLP-NGDIVSC 242
Query: 292 GSTDKTVKLF 301
G D+TV+++
Sbjct: 243 GE-DRTVRIW 251
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP---------FNEWILATGSTDKTVKLFD 302
+L++DL++ V + S++N +++ P E ++ATGS D + ++
Sbjct: 512 ILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569
Query: 303 LRKISTALHTFDSHKEEVFQVGWNPKNETIL--ASCCLGR 340
+++ + ++HK+ V + W + + A C+ R
Sbjct: 570 VKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 609
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 234 AWHLRHEYL-FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWI---- 288
A L+ YL G G + L IW+L P + PV SV H+ +N +
Sbjct: 75 ATSLQQRYLATGDFGGN--LHIWNLEAPEM--PVYSVKGHKEIINAIDGIGGLGIGEGAP 130
Query: 289 -LATGSTDKTVKLFDLRK 305
+ TGS D TVK++D R+
Sbjct: 131 EIVTGSRDGTVKVWDPRQ 148
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
E + SVGDD L+IW L P+ + S + F P N L G + ++
Sbjct: 157 EQVIASVGDDCTLIIWRLTD---EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 213
Query: 300 LFD 302
+FD
Sbjct: 214 IFD 216
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
E + SVGDD L+IW L P+ + S + F P N L G + ++
Sbjct: 156 EQVIASVGDDCTLIIWRLTD---EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 212
Query: 300 LFD 302
+FD
Sbjct: 213 IFD 215
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP---------FNEWILATGSTDKTVKLFD 302
+L++DL++ V + S++N +++ P E ++ATGS D + ++
Sbjct: 512 ILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569
Query: 303 LRKISTALHTFDSHKEEVFQVGWNPKNETIL--ASCCLGR 340
+++ + ++HK+ V + W + + A C+ R
Sbjct: 570 VKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 609
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 155 YSKHPSKPPLDGACSPDLRLRGHS-----TEGYGLSWSKFKE--GHL----------LSG 197
YS HP L+ A PD R H+ + + +++ F+ HL L
Sbjct: 101 YSLHPEL--LEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMT 158
Query: 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246
+D+ IC W P ++ E + K+H+ VVE + + G +
Sbjct: 159 ADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEI 207
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 270 VAHQSEVNCLAFNPFNEW-ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328
+++ E LAF+ + + I TGS K +L L+K+ AL T+ +E+ ++V W P
Sbjct: 1 MSYTKEQLMLAFSYMSYYGITHTGSAKKNAELI-LKKMKEALKTWKPFQEDDWEVVWGPA 59
Query: 329 NETI 332
T+
Sbjct: 60 VYTM 63
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246
L +D+ IC W P ++ E + K+H+ VVE + + G +
Sbjct: 166 LMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEI 217
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 271 AHQSEVNCLAFNP-FNEW--ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327
H+S + +++ P W ++ATG D +++F KI+ L S EE
Sbjct: 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF---KITEKLSPLAS--EESLTNSNXF 266
Query: 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387
N + GR S + E+ E + ELL H H ++ SWN
Sbjct: 267 DNSADVDXDAQGR-------SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319
Query: 388 WVISSVAEDNILQIWQ 403
++SS +D +++W+
Sbjct: 320 -ILSSAGDDGKVRLWK 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,210,560
Number of Sequences: 62578
Number of extensions: 617769
Number of successful extensions: 1701
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 277
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)