Query 014433
Match_columns 424
No_of_seqs 677 out of 4021
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 05:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 4.7E-81 1E-85 539.5 39.1 414 3-417 2-416 (422)
2 KOG0302 Ribosome Assembly prot 100.0 3.6E-47 7.7E-52 321.5 28.9 364 29-403 57-436 (440)
3 KOG0271 Notchless-like WD40 re 100.0 4.3E-44 9.4E-49 303.3 24.4 251 123-411 113-445 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-44 9E-49 307.1 23.4 248 118-403 210-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1.9E-42 4.1E-47 293.3 25.4 247 121-403 153-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-43 7.2E-48 301.6 20.8 252 120-409 170-422 (459)
7 KOG0277 Peroxisomal targeting 100.0 7.3E-42 1.6E-46 275.0 23.4 298 42-404 9-308 (311)
8 KOG0263 Transcription initiati 100.0 2.5E-39 5.5E-44 298.3 25.7 268 112-409 365-653 (707)
9 KOG0284 Polyadenylation factor 100.0 5E-39 1.1E-43 274.8 17.1 263 105-407 119-382 (464)
10 KOG0286 G-protein beta subunit 100.0 4.2E-36 9.2E-41 246.5 30.6 245 125-403 97-343 (343)
11 KOG0279 G protein beta subunit 100.0 1.7E-36 3.8E-41 247.3 28.0 260 121-416 11-273 (315)
12 KOG0286 G-protein beta subunit 100.0 2.7E-36 5.8E-41 247.7 29.2 255 122-408 52-306 (343)
13 KOG0315 G-protein beta subunit 100.0 1.2E-35 2.6E-40 238.6 27.7 255 118-409 32-292 (311)
14 KOG0273 Beta-transducin family 100.0 3.2E-36 7E-41 262.0 26.4 248 123-411 233-488 (524)
15 KOG0263 Transcription initiati 100.0 2.9E-36 6.2E-41 278.2 27.6 254 114-393 440-703 (707)
16 KOG0279 G protein beta subunit 100.0 2.2E-35 4.7E-40 240.9 27.9 255 119-406 57-314 (315)
17 KOG0284 Polyadenylation factor 100.0 3.5E-37 7.5E-42 263.5 16.5 251 115-405 86-337 (464)
18 KOG0645 WD40 repeat protein [G 100.0 7.8E-35 1.7E-39 236.7 27.5 252 123-405 59-311 (312)
19 KOG0285 Pleiotropic regulator 100.0 6.9E-36 1.5E-40 251.6 21.4 252 115-408 140-392 (460)
20 KOG0265 U5 snRNP-specific prot 100.0 5.9E-35 1.3E-39 240.7 23.9 254 119-407 41-298 (338)
21 KOG0295 WD40 repeat-containing 100.0 2.4E-35 5.2E-40 248.9 21.1 254 119-410 102-369 (406)
22 KOG0277 Peroxisomal targeting 100.0 8.9E-35 1.9E-39 234.3 21.3 249 129-407 12-267 (311)
23 KOG0318 WD40 repeat stress pro 100.0 8.8E-33 1.9E-37 243.7 31.8 262 114-405 178-602 (603)
24 KOG0645 WD40 repeat protein [G 100.0 1.7E-32 3.7E-37 223.1 28.9 256 116-407 5-263 (312)
25 KOG0276 Vesicle coat complex C 100.0 9.6E-34 2.1E-38 254.5 23.4 251 123-410 11-262 (794)
26 KOG0282 mRNA splicing factor [ 100.0 9.9E-35 2.1E-39 253.7 16.4 254 114-403 203-503 (503)
27 KOG0316 Conserved WD40 repeat- 100.0 2.7E-33 5.9E-38 223.3 22.3 246 122-409 14-261 (307)
28 KOG0291 WD40-repeat-containing 100.0 2.3E-32 5E-37 250.6 30.1 267 117-409 342-616 (893)
29 KOG0319 WD40-repeat-containing 100.0 2.3E-33 5E-38 256.7 22.4 260 121-409 361-623 (775)
30 KOG0319 WD40-repeat-containing 100.0 5.9E-33 1.3E-37 254.0 24.9 258 122-411 320-583 (775)
31 KOG0273 Beta-transducin family 100.0 2.7E-32 5.8E-37 237.7 27.7 257 108-405 251-523 (524)
32 KOG0281 Beta-TrCP (transducin 100.0 5.3E-34 1.1E-38 239.5 16.0 251 120-410 232-482 (499)
33 KOG0295 WD40 repeat-containing 100.0 1.2E-32 2.6E-37 232.6 23.7 246 121-404 146-405 (406)
34 KOG0266 WD40 repeat-containing 100.0 3.6E-32 7.9E-37 256.9 30.0 248 124-408 158-412 (456)
35 KOG0296 Angio-associated migra 100.0 2.2E-31 4.7E-36 225.2 29.0 247 118-405 57-398 (399)
36 KOG0281 Beta-TrCP (transducin 100.0 3.9E-34 8.5E-39 240.2 12.3 237 124-409 196-432 (499)
37 KOG0265 U5 snRNP-specific prot 100.0 1.9E-31 4.1E-36 220.0 27.4 241 123-402 88-335 (338)
38 KOG0291 WD40-repeat-containing 100.0 5.7E-31 1.2E-35 241.5 33.4 321 34-407 89-510 (893)
39 KOG0315 G-protein beta subunit 100.0 9.6E-32 2.1E-36 216.1 24.9 244 136-413 8-252 (311)
40 PLN00181 protein SPA1-RELATED; 100.0 1.2E-30 2.6E-35 264.5 38.9 259 122-404 529-792 (793)
41 KOG0643 Translation initiation 100.0 7.8E-32 1.7E-36 218.8 24.1 271 119-411 4-323 (327)
42 PLN00181 protein SPA1-RELATED; 100.0 6.9E-31 1.5E-35 266.2 36.9 260 123-407 481-740 (793)
43 KOG0292 Vesicle coat complex C 100.0 1.3E-32 2.7E-37 256.2 21.8 248 124-408 8-283 (1202)
44 cd00200 WD40 WD40 domain, foun 100.0 6.3E-30 1.4E-34 228.8 37.1 280 42-403 10-289 (289)
45 KOG0293 WD40 repeat-containing 100.0 1.4E-31 3.1E-36 229.5 23.6 254 115-407 258-515 (519)
46 KOG0283 WD40 repeat-containing 100.0 3.3E-31 7.1E-36 246.9 25.7 260 117-407 257-578 (712)
47 KOG0266 WD40 repeat-containing 100.0 5E-31 1.1E-35 249.2 27.5 247 122-405 200-454 (456)
48 KOG0313 Microtubule binding pr 100.0 5.3E-31 1.1E-35 223.9 23.9 258 119-405 138-418 (423)
49 cd00200 WD40 WD40 domain, foun 100.0 7.7E-30 1.7E-34 228.2 32.2 246 123-408 7-252 (289)
50 KOG0264 Nucleosome remodeling 100.0 1.5E-30 3.3E-35 226.2 26.4 221 120-349 172-405 (422)
51 KOG0285 Pleiotropic regulator 100.0 5E-30 1.1E-34 216.3 27.9 263 113-410 182-444 (460)
52 PTZ00421 coronin; Provisional 100.0 6.2E-30 1.4E-34 240.7 31.6 265 125-409 20-294 (493)
53 KOG0305 Anaphase promoting com 100.0 1.6E-30 3.5E-35 236.2 26.2 258 109-407 202-463 (484)
54 KOG0313 Microtubule binding pr 100.0 1.5E-30 3.2E-35 221.1 23.3 257 119-408 99-379 (423)
55 KOG0270 WD40 repeat-containing 100.0 4.5E-30 9.7E-35 222.5 25.9 275 113-408 161-452 (463)
56 KOG0318 WD40 repeat stress pro 100.0 6.5E-30 1.4E-34 225.7 26.9 264 122-410 56-355 (603)
57 PTZ00420 coronin; Provisional 100.0 3.5E-29 7.5E-34 236.7 33.8 238 143-409 49-297 (568)
58 KOG0292 Vesicle coat complex C 100.0 2.3E-30 5E-35 241.3 24.9 249 121-406 47-322 (1202)
59 KOG0310 Conserved WD40 repeat- 100.0 9.6E-31 2.1E-35 229.2 20.5 246 123-406 24-269 (487)
60 PTZ00421 coronin; Provisional 100.0 5E-29 1.1E-33 234.6 33.5 256 121-407 71-333 (493)
61 KOG0276 Vesicle coat complex C 100.0 3.8E-30 8.2E-35 231.5 24.1 239 124-399 54-293 (794)
62 KOG0640 mRNA cleavage stimulat 100.0 2.1E-30 4.6E-35 214.8 20.6 281 113-404 100-425 (430)
63 KOG0268 Sof1-like rRNA process 100.0 2.5E-31 5.4E-36 224.5 15.4 254 120-406 61-346 (433)
64 KOG0772 Uncharacterized conser 100.0 2.4E-30 5.2E-35 227.9 22.1 269 118-405 160-488 (641)
65 KOG0290 Conserved WD40 repeat- 100.0 1.9E-29 4.1E-34 207.4 24.8 321 35-403 38-363 (364)
66 KOG0269 WD40 repeat-containing 100.0 7.1E-31 1.5E-35 241.6 17.1 251 126-406 88-341 (839)
67 KOG0641 WD40 repeat protein [G 100.0 5.3E-28 1.2E-32 192.1 29.8 275 112-405 19-349 (350)
68 KOG1332 Vesicle coat complex C 100.0 9.8E-30 2.1E-34 204.1 19.2 260 123-407 9-288 (299)
69 KOG0306 WD40-repeat-containing 100.0 4.7E-29 1E-33 228.9 25.7 261 116-412 404-671 (888)
70 KOG1007 WD repeat protein TSSC 100.0 8.3E-29 1.8E-33 203.4 24.5 313 63-407 26-363 (370)
71 KOG0310 Conserved WD40 repeat- 100.0 5.2E-29 1.1E-33 218.4 23.4 242 123-403 66-307 (487)
72 KOG0278 Serine/threonine kinas 100.0 2.1E-29 4.5E-34 202.9 16.3 259 122-407 11-299 (334)
73 KOG0275 Conserved WD40 repeat- 100.0 5.1E-29 1.1E-33 207.8 18.6 259 121-411 209-473 (508)
74 KOG0973 Histone transcription 100.0 3E-28 6.6E-33 232.8 26.4 271 116-411 60-361 (942)
75 PTZ00420 coronin; Provisional 100.0 4.9E-27 1.1E-31 222.2 32.7 240 119-386 68-318 (568)
76 KOG0274 Cdc4 and related F-box 100.0 1.3E-27 2.9E-32 225.3 26.8 252 112-411 236-488 (537)
77 KOG1407 WD40 repeat protein [F 100.0 7.9E-28 1.7E-32 195.0 21.5 251 119-408 14-264 (313)
78 KOG2445 Nuclear pore complex c 100.0 6.9E-27 1.5E-31 193.8 27.1 276 123-407 11-320 (361)
79 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-26 5.8E-31 191.5 30.0 244 124-408 13-265 (311)
80 KOG0300 WD40 repeat-containing 100.0 9.3E-28 2E-32 199.8 20.6 264 113-410 135-433 (481)
81 KOG4283 Transcription-coupled 100.0 1.4E-27 3.1E-32 196.7 21.3 270 123-404 41-364 (397)
82 KOG0282 mRNA splicing factor [ 100.0 9.4E-29 2E-33 216.4 15.1 228 169-409 205-466 (503)
83 KOG0308 Conserved WD40 repeat- 100.0 4.1E-28 8.8E-33 219.5 19.7 257 124-407 20-287 (735)
84 KOG0294 WD40 repeat-containing 100.0 6.1E-27 1.3E-31 194.7 24.6 243 122-409 40-285 (362)
85 KOG0269 WD40 repeat-containing 100.0 4.2E-28 9.2E-33 223.4 19.1 258 125-410 39-301 (839)
86 KOG0316 Conserved WD40 repeat- 100.0 1.1E-26 2.4E-31 185.7 22.5 242 119-403 53-297 (307)
87 KOG0300 WD40 repeat-containing 100.0 2.6E-27 5.7E-32 197.1 19.6 264 119-407 184-478 (481)
88 KOG0307 Vesicle coat complex C 100.0 3.3E-28 7.2E-33 233.6 16.2 266 118-408 57-330 (1049)
89 KOG0274 Cdc4 and related F-box 100.0 5.7E-27 1.2E-31 221.0 23.9 241 124-412 207-448 (537)
90 KOG0275 Conserved WD40 repeat- 100.0 1.7E-27 3.7E-32 198.8 17.8 245 122-404 260-508 (508)
91 KOG0289 mRNA splicing factor [ 100.0 2.6E-26 5.6E-31 198.6 25.2 245 122-404 258-505 (506)
92 KOG0647 mRNA export protein (c 100.0 2.6E-26 5.6E-31 190.0 23.8 247 124-407 26-283 (347)
93 KOG0302 Ribosome Assembly prot 100.0 7.1E-27 1.5E-31 198.7 20.9 215 118-346 204-436 (440)
94 KOG0289 mRNA splicing factor [ 100.0 2.8E-26 6.1E-31 198.3 24.5 245 126-409 220-466 (506)
95 KOG0299 U3 snoRNP-associated p 100.0 1.5E-26 3.3E-31 201.5 23.0 270 118-407 135-412 (479)
96 KOG0306 WD40-repeat-containing 100.0 1.9E-25 4.2E-30 205.3 31.3 304 32-406 311-623 (888)
97 KOG1407 WD40 repeat protein [F 100.0 2.2E-25 4.8E-30 180.9 27.6 242 122-405 61-311 (313)
98 KOG0299 U3 snoRNP-associated p 100.0 2.5E-26 5.5E-31 200.1 22.8 248 123-408 200-459 (479)
99 KOG0270 WD40 repeat-containing 100.0 1.4E-26 3E-31 200.9 20.7 280 34-351 164-452 (463)
100 KOG1408 WD40 repeat protein [F 100.0 2.5E-26 5.4E-31 210.0 22.2 337 29-407 360-715 (1080)
101 KOG0288 WD40 repeat protein Ti 99.9 2.9E-27 6.2E-32 203.3 12.8 255 123-415 173-427 (459)
102 KOG0288 WD40 repeat protein Ti 99.9 2.6E-26 5.5E-31 197.5 18.6 237 123-403 217-459 (459)
103 KOG0301 Phospholipase A2-activ 99.9 7.5E-26 1.6E-30 206.4 22.5 243 121-413 53-296 (745)
104 KOG0296 Angio-associated migra 99.9 6.4E-25 1.4E-29 186.1 26.2 208 118-348 99-398 (399)
105 KOG0293 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 192.5 21.7 252 122-410 221-475 (519)
106 KOG0301 Phospholipase A2-activ 99.9 1.5E-25 3.3E-30 204.4 21.9 239 121-405 10-249 (745)
107 KOG1036 Mitotic spindle checkp 99.9 7.1E-25 1.5E-29 182.1 24.0 243 124-407 12-264 (323)
108 KOG0973 Histone transcription 99.9 2.8E-25 6E-30 212.7 24.2 262 122-406 9-313 (942)
109 KOG4283 Transcription-coupled 99.9 1.8E-25 3.8E-30 184.4 19.5 230 174-409 39-280 (397)
110 KOG4328 WD40 protein [Function 99.9 6.3E-25 1.4E-29 191.3 22.9 263 123-408 184-453 (498)
111 KOG0283 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 208.8 20.5 215 173-407 261-534 (712)
112 KOG0646 WD40 repeat protein [G 99.9 3.9E-25 8.4E-30 193.2 20.8 262 117-410 73-355 (476)
113 KOG0305 Anaphase promoting com 99.9 1E-24 2.2E-29 198.6 23.4 236 129-406 181-420 (484)
114 KOG1446 Histone H3 (Lys4) meth 99.9 7.6E-23 1.6E-27 170.9 32.6 244 124-409 55-307 (311)
115 KOG0772 Uncharacterized conser 99.9 1.6E-25 3.4E-30 197.7 17.1 221 170-407 159-396 (641)
116 KOG0321 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 198.5 21.1 269 117-410 92-396 (720)
117 KOG0307 Vesicle coat complex C 99.9 5.6E-26 1.2E-30 218.4 14.1 261 130-410 11-289 (1049)
118 KOG0640 mRNA cleavage stimulat 99.9 7.2E-25 1.6E-29 182.1 18.2 214 116-348 163-426 (430)
119 KOG1587 Cytoplasmic dynein int 99.9 4.6E-23 9.9E-28 193.1 31.9 281 116-414 233-525 (555)
120 KOG0267 Microtubule severing p 99.9 3.9E-26 8.5E-31 209.1 11.1 236 121-396 24-259 (825)
121 KOG0643 Translation initiation 99.9 5E-24 1.1E-28 173.6 22.0 209 173-408 5-223 (327)
122 KOG0641 WD40 repeat protein [G 99.9 8.8E-23 1.9E-27 162.5 27.9 225 114-348 78-349 (350)
123 KOG0290 Conserved WD40 repeat- 99.9 1.2E-23 2.6E-28 173.4 23.2 273 115-409 34-322 (364)
124 KOG1332 Vesicle coat complex C 99.9 9E-24 2E-28 170.0 21.3 219 117-349 48-287 (299)
125 KOG0268 Sof1-like rRNA process 99.9 3.7E-25 7.9E-30 187.4 12.6 214 171-410 59-307 (433)
126 KOG0308 Conserved WD40 repeat- 99.9 2.9E-24 6.2E-29 194.7 18.4 255 120-407 68-329 (735)
127 KOG1273 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 174.4 21.4 247 119-406 18-323 (405)
128 KOG0278 Serine/threonine kinas 99.9 1.5E-24 3.3E-29 174.9 13.7 206 119-351 94-300 (334)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.9E-22 6.3E-27 181.3 29.8 251 121-410 26-284 (300)
130 KOG0646 WD40 repeat protein [G 99.9 3.3E-23 7.2E-28 181.1 22.1 247 139-408 52-310 (476)
131 KOG1274 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 191.2 27.4 245 121-406 9-263 (933)
132 KOG0639 Transducin-like enhanc 99.9 4.8E-24 1E-28 187.8 16.6 254 116-407 410-665 (705)
133 KOG1036 Mitotic spindle checkp 99.9 1.1E-22 2.3E-27 169.3 23.4 235 118-394 47-293 (323)
134 KOG0267 Microtubule severing p 99.9 2.7E-25 5.9E-30 203.6 8.7 225 140-409 6-230 (825)
135 KOG1539 WD repeat protein [Gen 99.9 6E-23 1.3E-27 191.2 23.2 264 118-412 236-613 (910)
136 KOG0321 WD40 repeat-containing 99.9 2.9E-23 6.2E-28 187.9 19.9 256 130-409 54-351 (720)
137 KOG0647 mRNA export protein (c 99.9 2.2E-22 4.8E-27 166.8 23.4 239 119-396 66-315 (347)
138 KOG2096 WD40 repeat protein [G 99.9 3.7E-22 8E-27 166.7 24.1 272 120-407 81-404 (420)
139 KOG1188 WD40 repeat protein [G 99.9 7E-23 1.5E-27 172.5 19.7 248 139-404 41-345 (376)
140 KOG4328 WD40 protein [Function 99.9 3.6E-23 7.8E-28 180.5 18.3 221 170-405 178-399 (498)
141 KOG2106 Uncharacterized conser 99.9 1E-21 2.2E-26 173.4 27.0 240 126-405 247-521 (626)
142 KOG2919 Guanine nucleotide-bin 99.9 6.5E-22 1.4E-26 165.5 24.4 250 116-394 95-359 (406)
143 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-23 9.6E-28 181.5 17.9 214 139-386 92-305 (673)
144 KOG2055 WD40 repeat protein [G 99.9 1E-21 2.3E-26 171.6 25.0 248 124-405 256-512 (514)
145 KOG1445 Tumor-specific antigen 99.9 8.4E-23 1.8E-27 184.8 18.8 121 274-409 628-754 (1012)
146 KOG2919 Guanine nucleotide-bin 99.9 5.4E-22 1.2E-26 166.0 21.9 259 126-406 50-328 (406)
147 KOG0650 WD40 repeat nucleolar 99.9 2.2E-22 4.8E-27 181.0 20.3 261 119-402 394-732 (733)
148 KOG2048 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 176.8 25.3 246 124-408 24-278 (691)
149 KOG0639 Transducin-like enhanc 99.9 1.7E-22 3.6E-27 178.2 16.7 241 123-404 463-703 (705)
150 KOG2096 WD40 repeat protein [G 99.9 7.5E-22 1.6E-26 164.8 19.7 228 173-414 81-317 (420)
151 KOG0294 WD40 repeat-containing 99.9 6.8E-21 1.5E-25 159.0 25.1 207 117-351 75-284 (362)
152 KOG4227 WD40 repeat protein [G 99.9 2E-21 4.4E-26 166.5 21.9 273 119-407 50-389 (609)
153 KOG1063 RNA polymerase II elon 99.9 6E-21 1.3E-25 174.6 26.0 260 122-407 264-650 (764)
154 KOG2445 Nuclear pore complex c 99.9 1.2E-20 2.7E-25 156.9 24.8 235 113-350 46-320 (361)
155 KOG1034 Transcriptional repres 99.9 3.6E-21 7.9E-26 161.4 21.6 253 124-405 88-383 (385)
156 KOG0303 Actin-binding protein 99.9 3.5E-21 7.5E-26 165.2 21.9 217 173-408 76-297 (472)
157 KOG1408 WD40 repeat protein [F 99.9 4.8E-21 1E-25 175.7 23.0 258 130-411 329-677 (1080)
158 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-21 4E-26 171.4 19.3 246 128-407 37-282 (673)
159 KOG1007 WD repeat protein TSSC 99.9 2.8E-21 6.1E-26 159.3 18.8 213 124-349 122-362 (370)
160 KOG0303 Actin-binding protein 99.9 4.7E-21 1E-25 164.4 19.7 215 122-351 78-297 (472)
161 KOG1009 Chromatin assembly com 99.9 4.1E-20 8.8E-25 159.3 23.8 292 74-409 32-376 (434)
162 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.4E-19 3.1E-24 163.7 29.1 236 139-409 2-241 (300)
163 KOG0642 Cell-cycle nuclear pro 99.9 3.4E-21 7.4E-26 172.5 17.6 269 120-412 289-568 (577)
164 KOG1034 Transcriptional repres 99.9 6.4E-21 1.4E-25 159.9 17.6 269 121-408 34-340 (385)
165 KOG2106 Uncharacterized conser 99.9 3.8E-19 8.3E-24 157.3 28.8 244 124-408 199-480 (626)
166 KOG2055 WD40 repeat protein [G 99.9 4E-20 8.6E-25 161.8 21.0 250 126-406 214-468 (514)
167 KOG1587 Cytoplasmic dynein int 99.9 2E-19 4.4E-24 168.8 26.1 241 148-412 222-479 (555)
168 KOG2048 WD40 repeat protein [G 99.9 1.4E-18 3E-23 159.0 28.6 249 123-406 67-320 (691)
169 KOG1517 Guanine nucleotide bin 99.9 7.8E-19 1.7E-23 167.8 28.0 267 126-409 1110-1385(1387)
170 KOG1274 WD40 repeat protein [G 99.8 4.6E-19 9.9E-24 167.3 25.1 222 124-387 55-283 (933)
171 KOG0322 G-protein beta subunit 99.8 3.3E-20 7.1E-25 151.2 15.1 251 123-404 12-322 (323)
172 KOG1063 RNA polymerase II elon 99.8 2.4E-19 5.2E-24 164.2 21.3 277 115-410 180-607 (764)
173 PRK11028 6-phosphogluconolacto 99.8 1.8E-17 4E-22 151.8 33.6 268 114-405 23-304 (330)
174 KOG1188 WD40 repeat protein [G 99.8 1.6E-19 3.4E-24 152.5 17.6 197 193-408 42-245 (376)
175 KOG1539 WD repeat protein [Gen 99.8 2.1E-18 4.6E-23 161.2 25.5 267 114-409 103-369 (910)
176 KOG0649 WD40 repeat protein [G 99.8 3.8E-18 8.2E-23 137.7 21.5 248 127-407 12-276 (325)
177 KOG1445 Tumor-specific antigen 99.8 1.1E-18 2.4E-23 158.4 18.5 241 144-406 599-845 (1012)
178 PF12265 CAF1C_H4-bd: Histone- 99.8 7.6E-21 1.6E-25 129.7 2.4 71 18-88 1-72 (74)
179 KOG1310 WD40 repeat protein [G 99.8 1.3E-18 2.8E-23 155.5 16.9 230 172-408 44-306 (758)
180 KOG1523 Actin-related protein 99.8 1.6E-17 3.4E-22 139.4 21.6 213 124-351 9-239 (361)
181 KOG1310 WD40 repeat protein [G 99.8 1.7E-18 3.7E-23 154.8 16.3 220 121-352 46-307 (758)
182 KOG1538 Uncharacterized conser 99.8 1.1E-17 2.4E-22 152.9 21.9 248 127-408 14-296 (1081)
183 COG2319 FOG: WD40 repeat [Gene 99.8 2.6E-16 5.6E-21 148.9 32.2 254 120-409 60-318 (466)
184 KOG2110 Uncharacterized conser 99.8 1E-16 2.2E-21 137.1 25.9 244 127-413 7-256 (391)
185 KOG1273 WD40 repeat protein [G 99.8 9.4E-18 2E-22 140.3 18.7 199 181-407 26-228 (405)
186 KOG0644 Uncharacterized conser 99.8 2.3E-19 4.9E-24 167.5 9.8 248 120-412 185-433 (1113)
187 KOG1963 WD40 repeat protein [G 99.8 1.9E-16 4.2E-21 149.4 27.8 268 123-413 203-547 (792)
188 KOG0771 Prolactin regulatory e 99.8 4.6E-17 1E-21 141.5 21.4 198 182-406 148-355 (398)
189 KOG1524 WD40 repeat-containing 99.8 1E-17 2.2E-22 149.5 17.6 209 140-404 77-285 (737)
190 KOG1334 WD40 repeat protein [G 99.8 7.2E-18 1.6E-22 148.8 16.1 271 122-409 139-428 (559)
191 KOG1240 Protein kinase contain 99.8 7.3E-17 1.6E-21 156.8 23.8 284 116-408 1039-1337(1431)
192 KOG1517 Guanine nucleotide bin 99.8 9.8E-17 2.1E-21 153.8 22.9 258 126-413 1065-1341(1387)
193 COG2319 FOG: WD40 repeat [Gene 99.8 3.3E-15 7.1E-20 141.4 32.5 247 126-408 110-362 (466)
194 KOG1009 Chromatin assembly com 99.8 1.5E-17 3.2E-22 143.7 14.4 213 177-394 12-249 (434)
195 KOG0649 WD40 repeat protein [G 99.8 8E-16 1.7E-20 124.4 22.9 251 112-402 49-313 (325)
196 PRK11028 6-phosphogluconolacto 99.8 2.3E-15 5E-20 137.9 29.2 242 140-406 4-259 (330)
197 KOG0280 Uncharacterized conser 99.7 1.6E-16 3.5E-21 131.9 17.6 260 126-407 70-335 (339)
198 KOG0771 Prolactin regulatory e 99.7 5.8E-17 1.3E-21 140.9 15.6 202 129-349 148-355 (398)
199 KOG0650 WD40 repeat nucleolar 99.7 6.5E-17 1.4E-21 146.1 15.9 204 118-345 514-732 (733)
200 KOG2394 WD40 protein DMR-N9 [G 99.7 4.3E-16 9.3E-21 139.3 20.4 254 130-411 128-458 (636)
201 KOG2321 WD40 repeat protein [G 99.7 2.4E-16 5.1E-21 142.0 18.4 266 114-404 40-342 (703)
202 KOG1523 Actin-related protein 99.7 6.2E-16 1.3E-20 129.9 19.5 226 174-407 6-238 (361)
203 KOG3881 Uncharacterized conser 99.7 2.1E-15 4.6E-20 130.0 21.2 256 124-407 54-322 (412)
204 KOG1524 WD40 repeat-containing 99.7 2.8E-16 6E-21 140.4 15.8 248 118-407 7-257 (737)
205 KOG0642 Cell-cycle nuclear pro 99.7 4.4E-16 9.6E-21 140.0 17.1 221 117-350 336-563 (577)
206 PRK01742 tolB translocation pr 99.7 3.2E-15 6.9E-20 141.3 23.9 213 147-404 183-400 (429)
207 PF10282 Lactonase: Lactonase, 99.7 1.4E-13 3E-18 126.2 33.2 304 66-410 2-329 (345)
208 KOG2139 WD40 repeat protein [G 99.7 8.7E-15 1.9E-19 125.0 22.7 248 125-393 98-364 (445)
209 PRK01742 tolB translocation pr 99.7 6.7E-15 1.5E-19 139.1 23.3 222 122-385 200-426 (429)
210 KOG1272 WD40-repeat-containing 99.7 2.7E-16 5.9E-21 138.2 11.1 231 127-404 131-361 (545)
211 KOG0322 G-protein beta subunit 99.7 1.7E-15 3.8E-20 123.9 14.2 165 179-347 151-322 (323)
212 COG2706 3-carboxymuconate cycl 99.7 1.5E-12 3.3E-17 112.1 32.6 299 64-407 3-323 (346)
213 KOG4227 WD40 repeat protein [G 99.7 3.4E-15 7.4E-20 128.6 16.5 175 171-351 49-228 (609)
214 KOG2110 Uncharacterized conser 99.7 3.9E-13 8.4E-18 115.4 28.6 188 140-351 58-251 (391)
215 KOG2111 Uncharacterized conser 99.7 1.1E-13 2.4E-18 116.5 24.5 238 130-410 10-261 (346)
216 KOG2139 WD40 repeat protein [G 99.7 2.7E-13 5.8E-18 116.1 25.7 210 124-349 139-384 (445)
217 PRK05137 tolB translocation pr 99.6 2.9E-13 6.3E-18 128.4 29.1 221 148-409 182-416 (435)
218 PF08662 eIF2A: Eukaryotic tra 99.6 3.1E-14 6.7E-19 118.6 19.0 160 231-413 9-187 (194)
219 KOG0309 Conserved WD40 repeat- 99.6 4.1E-15 8.9E-20 137.8 14.7 271 121-410 20-344 (1081)
220 PRK03629 tolB translocation pr 99.6 7.1E-13 1.5E-17 125.1 30.1 219 148-408 179-409 (429)
221 PRK02889 tolB translocation pr 99.6 2.5E-13 5.3E-18 128.3 26.4 219 148-404 176-402 (427)
222 KOG1538 Uncharacterized conser 99.6 1.1E-14 2.4E-19 133.6 15.7 204 180-415 14-221 (1081)
223 KOG1334 WD40 repeat protein [G 99.6 7.4E-15 1.6E-19 130.0 13.8 259 122-407 182-468 (559)
224 PRK04922 tolB translocation pr 99.6 2.7E-13 5.8E-18 128.5 25.5 220 148-408 184-414 (433)
225 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-14 3.6E-19 129.3 15.3 196 141-350 188-454 (636)
226 KOG1963 WD40 repeat protein [G 99.6 3E-13 6.6E-18 128.1 24.4 259 129-408 20-378 (792)
227 KOG3881 Uncharacterized conser 99.6 1E-13 2.2E-18 119.8 18.7 212 125-350 105-322 (412)
228 KOG2111 Uncharacterized conser 99.6 4.8E-12 1E-16 106.8 28.0 179 148-351 75-259 (346)
229 PRK04922 tolB translocation pr 99.6 5.1E-13 1.1E-17 126.6 25.2 221 123-384 201-432 (433)
230 KOG0644 Uncharacterized conser 99.6 4.2E-15 9.2E-20 139.4 10.4 242 122-407 229-470 (1113)
231 PRK03629 tolB translocation pr 99.6 9.2E-13 2E-17 124.3 26.2 222 123-385 196-428 (429)
232 KOG0280 Uncharacterized conser 99.6 8.2E-14 1.8E-18 116.0 16.5 239 147-410 45-289 (339)
233 PRK05137 tolB translocation pr 99.6 4.8E-12 1E-16 120.1 30.8 203 122-349 198-413 (435)
234 PRK02889 tolB translocation pr 99.6 6.1E-13 1.3E-17 125.7 24.4 227 122-385 192-425 (427)
235 KOG1240 Protein kinase contain 99.6 2.6E-13 5.5E-18 132.7 21.3 226 168-409 1038-1277(1431)
236 PF08662 eIF2A: Eukaryotic tra 99.6 3.2E-13 7E-18 112.5 18.5 153 182-349 9-180 (194)
237 KOG1272 WD40-repeat-containing 99.6 9.9E-15 2.2E-19 128.5 9.5 242 116-398 161-402 (545)
238 KOG4497 Uncharacterized conser 99.6 2.6E-14 5.7E-19 120.6 11.5 220 131-401 14-236 (447)
239 KOG4497 Uncharacterized conser 99.6 1.3E-12 2.9E-17 110.5 20.5 246 124-408 47-394 (447)
240 KOG1354 Serine/threonine prote 99.5 7.6E-13 1.6E-17 112.6 18.7 267 122-412 22-366 (433)
241 PF02239 Cytochrom_D1: Cytochr 99.5 8.1E-12 1.8E-16 114.5 26.8 264 116-409 26-351 (369)
242 KOG1409 Uncharacterized conser 99.5 1.1E-12 2.4E-17 111.6 18.6 215 122-352 21-274 (404)
243 KOG1354 Serine/threonine prote 99.5 2.9E-13 6.3E-18 115.1 14.7 289 107-402 66-431 (433)
244 PRK01029 tolB translocation pr 99.5 4.5E-11 9.8E-16 112.5 29.2 229 148-409 165-407 (428)
245 PRK04792 tolB translocation pr 99.5 1.6E-11 3.5E-16 116.4 26.0 223 123-385 215-447 (448)
246 TIGR02800 propeller_TolB tol-p 99.5 3.7E-11 8.1E-16 114.0 28.4 217 148-406 170-398 (417)
247 PRK04792 tolB translocation pr 99.5 6.7E-11 1.4E-15 112.2 29.5 219 149-407 199-427 (448)
248 KOG1064 RAVE (regulator of V-A 99.5 5.3E-13 1.2E-17 134.8 13.9 193 123-352 2206-2402(2439)
249 PF02239 Cytochrom_D1: Cytochr 99.5 3.5E-11 7.5E-16 110.4 24.6 246 140-407 8-304 (369)
250 PRK00178 tolB translocation pr 99.5 5.7E-11 1.2E-15 112.9 26.9 218 149-407 180-408 (430)
251 PRK00178 tolB translocation pr 99.5 4.8E-11 1E-15 113.5 26.1 224 122-385 195-428 (430)
252 KOG4547 WD40 repeat-containing 99.4 8E-12 1.7E-16 113.8 17.9 195 189-406 3-221 (541)
253 KOG4547 WD40 repeat-containing 99.4 5.7E-11 1.2E-15 108.4 22.5 199 135-352 2-224 (541)
254 TIGR02800 propeller_TolB tol-p 99.4 1.1E-10 2.3E-15 110.9 25.8 198 123-347 187-396 (417)
255 KOG0974 WD-repeat protein WDR6 99.4 1E-11 2.2E-16 120.0 18.6 203 184-413 93-296 (967)
256 PRK01029 tolB translocation pr 99.4 2.4E-10 5.2E-15 107.6 26.5 209 124-350 183-405 (428)
257 KOG2321 WD40 repeat protein [G 99.4 3.9E-11 8.5E-16 108.9 17.8 206 126-351 134-346 (703)
258 PLN02919 haloacid dehalogenase 99.4 1.3E-09 2.8E-14 112.9 31.3 261 129-409 571-892 (1057)
259 KOG2315 Predicted translation 99.4 1.4E-10 3E-15 105.2 20.9 244 129-413 129-398 (566)
260 KOG4532 WD40-like repeat conta 99.4 3.2E-10 6.9E-15 93.7 20.4 248 130-406 72-332 (344)
261 PF10282 Lactonase: Lactonase, 99.3 2.1E-09 4.6E-14 98.7 27.6 244 142-405 3-275 (345)
262 KOG4714 Nucleoporin [Nuclear s 99.3 1.6E-10 3.4E-15 95.1 15.8 261 128-403 39-316 (319)
263 KOG0309 Conserved WD40 repeat- 99.3 3.5E-11 7.6E-16 112.2 13.4 213 120-349 109-340 (1081)
264 COG5170 CDC55 Serine/threonine 99.3 1E-10 2.3E-15 98.5 14.8 262 124-409 25-371 (460)
265 KOG2315 Predicted translation 99.3 9.5E-10 2E-14 99.9 21.2 207 119-349 159-391 (566)
266 KOG1409 Uncharacterized conser 99.3 4.9E-10 1.1E-14 95.8 16.5 226 170-418 16-283 (404)
267 KOG0974 WD-repeat protein WDR6 99.2 4.7E-10 1E-14 108.8 17.3 192 132-351 94-291 (967)
268 COG2706 3-carboxymuconate cycl 99.2 6.7E-08 1.4E-12 83.9 27.5 244 147-407 15-276 (346)
269 KOG2041 WD40 repeat protein [G 99.2 1.4E-08 3E-13 95.0 23.7 257 123-407 12-339 (1189)
270 KOG1064 RAVE (regulator of V-A 99.2 1.8E-10 3.9E-15 117.2 11.4 192 177-408 2207-2401(2439)
271 KOG4190 Uncharacterized conser 99.1 4E-10 8.8E-15 102.1 11.2 222 114-350 724-950 (1034)
272 KOG1912 WD40 repeat protein [G 99.1 1.5E-08 3.2E-13 95.7 21.6 245 125-406 15-305 (1062)
273 KOG1008 Uncharacterized conser 99.1 5.2E-11 1.1E-15 109.6 5.3 211 126-351 57-278 (783)
274 PRK04043 tolB translocation pr 99.1 1.9E-07 4.2E-12 87.5 28.9 197 180-407 189-402 (419)
275 PRK04043 tolB translocation pr 99.1 1E-07 2.2E-12 89.4 26.5 196 126-348 188-400 (419)
276 TIGR02658 TTQ_MADH_Hv methylam 99.1 1E-07 2.2E-12 85.8 25.3 254 117-409 38-334 (352)
277 KOG4714 Nucleoporin [Nuclear s 99.1 1.2E-09 2.7E-14 89.9 9.5 151 242-409 103-258 (319)
278 KOG2314 Translation initiation 99.0 8.1E-08 1.8E-12 87.5 21.3 122 273-410 445-578 (698)
279 COG5170 CDC55 Serine/threonine 99.0 8.1E-09 1.8E-13 87.3 13.8 223 177-407 25-311 (460)
280 PLN02919 haloacid dehalogenase 99.0 1.8E-07 3.9E-12 97.3 26.7 209 127-351 625-891 (1057)
281 PF08450 SGL: SMP-30/Gluconola 99.0 2.8E-06 6.1E-11 74.3 30.4 224 130-394 4-245 (246)
282 PF15492 Nbas_N: Neuroblastoma 99.0 2E-06 4.4E-11 72.6 27.2 240 131-410 3-264 (282)
283 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.2E-12 78.2 19.9 196 193-407 86-284 (344)
284 PF15492 Nbas_N: Neuroblastoma 99.0 2.1E-07 4.6E-12 78.4 20.8 201 129-352 47-263 (282)
285 PF04762 IKI3: IKI3 family; I 99.0 3.1E-07 6.8E-12 93.8 26.1 278 113-407 110-458 (928)
286 KOG4190 Uncharacterized conser 99.0 2.7E-09 5.9E-14 96.8 8.9 217 171-410 728-953 (1034)
287 KOG1645 RING-finger-containing 99.0 4.7E-08 1E-12 85.6 16.0 221 169-411 184-425 (463)
288 KOG2695 WD40 repeat protein [G 98.9 4.6E-09 9.9E-14 90.0 8.4 146 245-409 229-380 (425)
289 KOG1912 WD40 repeat protein [G 98.9 2.3E-07 5E-12 87.9 19.9 269 123-411 53-370 (1062)
290 KOG3914 WD repeat protein WDR4 98.9 3.9E-08 8.4E-13 86.2 13.6 159 184-354 68-229 (390)
291 COG4946 Uncharacterized protei 98.9 1.6E-06 3.5E-11 77.8 23.9 195 135-350 276-479 (668)
292 KOG3914 WD repeat protein WDR4 98.9 5E-08 1.1E-12 85.5 14.1 158 232-410 67-228 (390)
293 COG4946 Uncharacterized protei 98.9 1.4E-06 3E-11 78.3 23.2 261 120-406 354-655 (668)
294 KOG2695 WD40 repeat protein [G 98.9 1.2E-08 2.6E-13 87.5 9.6 155 145-316 231-387 (425)
295 KOG1645 RING-finger-containing 98.9 3.2E-07 6.9E-12 80.6 17.6 248 123-406 191-462 (463)
296 PF04762 IKI3: IKI3 family; I 98.8 4.1E-06 8.8E-11 85.8 27.7 251 124-405 74-379 (928)
297 COG5354 Uncharacterized protei 98.8 1.1E-06 2.3E-11 79.6 19.7 198 126-349 174-396 (561)
298 KOG0882 Cyclophilin-related pe 98.8 1.6E-07 3.5E-12 83.5 14.3 271 120-410 4-310 (558)
299 KOG2114 Vacuolar assembly/sort 98.8 2.7E-06 5.8E-11 81.9 22.6 202 132-350 30-245 (933)
300 KOG1275 PAB-dependent poly(A) 98.8 3.4E-07 7.3E-12 88.3 16.1 182 139-347 148-341 (1118)
301 KOG1275 PAB-dependent poly(A) 98.8 5.2E-07 1.1E-11 87.1 17.3 190 190-407 146-344 (1118)
302 PF07433 DUF1513: Protein of u 98.7 3E-05 6.5E-10 67.7 25.6 233 126-395 5-276 (305)
303 KOG0882 Cyclophilin-related pe 98.7 2.2E-07 4.8E-12 82.6 12.6 225 177-413 8-239 (558)
304 KOG2066 Vacuolar assembly/sort 98.7 8E-07 1.7E-11 84.8 17.1 187 124-349 38-234 (846)
305 KOG1008 Uncharacterized conser 98.7 5.5E-09 1.2E-13 96.6 2.4 212 179-407 57-277 (783)
306 COG5354 Uncharacterized protei 98.7 9.4E-06 2E-10 73.7 21.8 206 121-350 68-308 (561)
307 KOG2041 WD40 repeat protein [G 98.7 3.4E-07 7.5E-12 86.0 12.9 165 178-349 14-187 (1189)
308 TIGR02658 TTQ_MADH_Hv methylam 98.6 2E-05 4.4E-10 71.1 22.8 200 130-352 109-334 (352)
309 PF00400 WD40: WD domain, G-be 98.6 1.2E-07 2.7E-12 56.3 5.4 38 308-346 2-39 (39)
310 KOG2114 Vacuolar assembly/sort 98.6 8.1E-06 1.7E-10 78.7 20.1 198 185-407 30-245 (933)
311 PF00400 WD40: WD domain, G-be 98.6 1.7E-07 3.8E-12 55.7 5.9 38 365-403 2-39 (39)
312 PF11768 DUF3312: Protein of u 98.5 1.7E-05 3.6E-10 73.9 19.4 133 111-261 191-332 (545)
313 PF08450 SGL: SMP-30/Gluconola 98.5 7.9E-05 1.7E-09 65.2 23.1 200 183-407 4-215 (246)
314 PF11768 DUF3312: Protein of u 98.5 0.00037 8.1E-09 65.2 27.9 175 229-410 207-405 (545)
315 KOG1832 HIV-1 Vpr-binding prot 98.5 1.4E-07 3E-12 90.6 5.4 197 123-354 1099-1297(1516)
316 KOG1920 IkappaB kinase complex 98.4 0.00015 3.3E-09 72.9 24.7 206 126-351 69-325 (1265)
317 PF07433 DUF1513: Protein of u 98.4 8.4E-05 1.8E-09 64.9 20.4 214 181-413 7-255 (305)
318 PF06977 SdiA-regulated: SdiA- 98.4 0.0004 8.6E-09 59.8 23.6 205 124-345 20-247 (248)
319 PF08553 VID27: VID27 cytoplas 98.4 7.4E-05 1.6E-09 74.0 21.3 146 190-348 492-647 (794)
320 KOG2066 Vacuolar assembly/sort 98.4 3.3E-05 7.2E-10 74.1 17.7 191 179-407 40-235 (846)
321 COG0823 TolB Periplasmic compo 98.4 7.2E-05 1.6E-09 70.0 19.8 167 173-350 187-360 (425)
322 KOG3621 WD40 repeat-containing 98.3 1.5E-05 3.2E-10 75.4 14.6 209 124-351 32-247 (726)
323 PF13360 PQQ_2: PQQ-like domai 98.2 0.00075 1.6E-08 58.6 22.3 214 147-409 2-234 (238)
324 COG0823 TolB Periplasmic compo 98.2 0.00022 4.7E-09 66.8 18.4 189 126-338 193-390 (425)
325 TIGR03300 assembly_YfgL outer 98.2 0.0013 2.9E-08 61.5 23.7 217 140-402 147-376 (377)
326 TIGR03300 assembly_YfgL outer 98.2 0.0015 3.2E-08 61.2 24.0 230 140-410 107-343 (377)
327 KOG1920 IkappaB kinase complex 98.1 0.00064 1.4E-08 68.6 20.9 204 179-407 69-324 (1265)
328 PF08596 Lgl_C: Lethal giant l 98.1 0.00019 4.1E-09 66.5 16.0 258 127-405 3-335 (395)
329 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0061 1.3E-07 56.4 25.8 252 125-396 42-349 (353)
330 KOG3617 WD40 and TPR repeat-co 98.0 0.00037 8E-09 67.6 17.2 109 129-258 19-131 (1416)
331 PF06977 SdiA-regulated: SdiA- 98.0 0.0066 1.4E-07 52.4 24.3 206 173-402 16-247 (248)
332 PF02897 Peptidase_S9_N: Proly 98.0 0.0089 1.9E-07 56.7 26.7 250 128-409 126-408 (414)
333 KOG1832 HIV-1 Vpr-binding prot 98.0 1.2E-05 2.6E-10 77.8 6.9 165 218-407 1092-1257(1516)
334 COG3391 Uncharacterized conser 98.0 0.017 3.7E-07 54.0 28.5 246 127-409 32-287 (381)
335 PF04053 Coatomer_WDAD: Coatom 97.9 0.0031 6.6E-08 59.5 20.6 171 149-349 3-174 (443)
336 PRK02888 nitrous-oxide reducta 97.9 0.001 2.2E-08 63.8 17.4 109 236-349 285-405 (635)
337 PF04841 Vps16_N: Vps16, N-ter 97.9 0.022 4.8E-07 53.6 27.9 177 149-349 62-247 (410)
338 COG3391 Uncharacterized conser 97.9 0.0097 2.1E-07 55.5 23.0 207 126-351 74-286 (381)
339 PF08553 VID27: VID27 cytoplas 97.8 0.00098 2.1E-08 66.3 16.9 145 239-405 492-647 (794)
340 KOG2314 Translation initiation 97.8 0.0008 1.7E-08 62.3 14.9 140 181-335 213-363 (698)
341 KOG3617 WD40 and TPR repeat-co 97.8 0.00055 1.2E-08 66.5 14.3 72 127-210 61-132 (1416)
342 PF08596 Lgl_C: Lethal giant l 97.8 0.0028 6.1E-08 58.9 18.7 206 180-406 3-291 (395)
343 PF03178 CPSF_A: CPSF A subuni 97.7 0.018 4E-07 52.4 22.0 147 191-349 42-203 (321)
344 PF13360 PQQ_2: PQQ-like domai 97.7 0.018 3.9E-07 49.9 20.5 184 140-351 38-233 (238)
345 PF04053 Coatomer_WDAD: Coatom 97.7 0.037 8E-07 52.3 23.5 224 123-407 30-264 (443)
346 PRK02888 nitrous-oxide reducta 97.6 0.004 8.6E-08 60.0 16.2 163 236-407 201-406 (635)
347 PRK11138 outer membrane biogen 97.6 0.029 6.3E-07 52.8 22.2 182 193-404 207-393 (394)
348 KOG4640 Anaphase-promoting com 97.6 0.00041 8.8E-09 65.2 9.2 95 227-327 20-115 (665)
349 KOG2395 Protein involved in va 97.5 0.0032 7E-08 58.2 14.2 142 194-349 349-501 (644)
350 KOG4640 Anaphase-promoting com 97.5 0.00044 9.6E-09 65.0 8.8 97 123-237 18-115 (665)
351 KOG2395 Protein involved in va 97.5 0.0041 8.8E-08 57.6 14.2 146 237-404 343-499 (644)
352 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0085 1.8E-07 43.9 13.1 102 128-253 2-109 (111)
353 KOG3621 WD40 repeat-containing 97.5 0.00096 2.1E-08 63.6 10.1 113 280-406 40-155 (726)
354 COG3386 Gluconolactonase [Carb 97.5 0.076 1.6E-06 47.6 22.6 229 131-396 30-277 (307)
355 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.038 8.2E-07 51.1 20.1 231 147-405 22-313 (353)
356 PF14583 Pectate_lyase22: Olig 97.4 0.054 1.2E-06 49.4 20.1 159 228-404 188-380 (386)
357 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.014 2.9E-07 42.9 13.3 102 230-343 2-109 (111)
358 smart00320 WD40 WD40 repeats. 97.4 0.00063 1.4E-08 39.1 5.4 38 365-403 3-40 (40)
359 KOG4441 Proteins containing BT 97.4 0.029 6.3E-07 55.1 19.5 237 138-414 285-555 (571)
360 KOG2444 WD40 repeat protein [G 97.3 0.0006 1.3E-08 56.2 6.2 145 242-407 32-179 (238)
361 smart00320 WD40 WD40 repeats. 97.3 0.00067 1.5E-08 39.0 4.7 37 170-207 4-40 (40)
362 COG3490 Uncharacterized protei 97.2 0.054 1.2E-06 46.5 16.9 105 228-335 68-179 (366)
363 KOG4649 PQQ (pyrrolo-quinoline 97.2 0.033 7.2E-07 47.1 15.3 128 186-327 18-145 (354)
364 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.4E-08 39.8 5.5 38 119-157 5-42 (47)
365 PRK11138 outer membrane biogen 97.2 0.22 4.9E-06 46.8 23.6 227 140-410 122-358 (394)
366 PF04841 Vps16_N: Vps16, N-ter 97.1 0.18 3.9E-06 47.5 21.5 172 202-405 62-246 (410)
367 COG3386 Gluconolactonase [Carb 97.1 0.17 3.7E-06 45.4 19.9 202 183-405 29-243 (307)
368 COG3204 Uncharacterized protei 97.1 0.14 3.1E-06 44.4 17.8 178 123-314 83-271 (316)
369 KOG2377 Uncharacterized conser 97.0 0.019 4.1E-07 52.5 13.0 160 229-407 24-187 (657)
370 PHA02713 hypothetical protein; 97.0 0.066 1.4E-06 52.7 18.1 149 240-410 352-538 (557)
371 PHA02713 hypothetical protein; 97.0 0.052 1.1E-06 53.4 16.8 93 251-350 433-535 (557)
372 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.12 2.6E-06 43.9 16.0 111 234-352 17-127 (354)
373 PRK13616 lipoprotein LpqB; Pro 96.9 0.21 4.7E-06 49.2 20.6 186 126-341 350-561 (591)
374 COG3490 Uncharacterized protei 96.9 0.25 5.3E-06 42.7 21.9 214 122-351 64-313 (366)
375 PF15390 DUF4613: Domain of un 96.9 0.086 1.9E-06 50.1 16.1 125 177-305 55-187 (671)
376 KOG2079 Vacuolar assembly/sort 96.8 0.018 3.8E-07 58.1 12.0 99 193-303 101-202 (1206)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.44 9.4E-06 44.5 21.6 34 317-351 307-340 (415)
378 KOG4441 Proteins containing BT 96.8 0.41 8.8E-06 47.3 21.3 192 123-341 320-534 (571)
379 PF15390 DUF4613: Domain of un 96.8 0.069 1.5E-06 50.7 14.8 155 179-349 20-187 (671)
380 KOG2079 Vacuolar assembly/sort 96.8 0.0082 1.8E-07 60.3 9.2 103 288-405 101-203 (1206)
381 PF06433 Me-amine-dh_H: Methyl 96.7 0.23 4.9E-06 44.5 17.2 160 188-352 144-324 (342)
382 PF03178 CPSF_A: CPSF A subuni 96.7 0.31 6.7E-06 44.4 18.9 169 113-301 76-262 (321)
383 PF02897 Peptidase_S9_N: Proly 96.4 0.86 1.9E-05 43.2 26.8 208 131-351 175-407 (414)
384 KOG3630 Nuclear pore complex, 96.4 0.098 2.1E-06 53.4 14.0 149 180-334 102-260 (1405)
385 PRK13616 lipoprotein LpqB; Pro 96.4 0.19 4E-06 49.7 16.0 155 228-406 350-526 (591)
386 PF05694 SBP56: 56kDa selenium 96.3 0.94 2E-05 42.0 19.6 207 193-407 89-344 (461)
387 KOG3630 Nuclear pore complex, 96.3 0.12 2.5E-06 52.8 13.8 151 228-391 101-260 (1405)
388 PF00780 CNH: CNH domain; Int 96.2 0.8 1.7E-05 40.6 25.8 229 139-410 8-260 (275)
389 KOG2444 WD40 repeat protein [G 96.2 0.016 3.5E-07 48.0 6.3 145 193-350 32-179 (238)
390 PF10647 Gmad1: Lipoprotein Lp 96.2 0.8 1.7E-05 40.0 20.9 155 127-300 25-192 (253)
391 PF12894 Apc4_WD40: Anaphase-p 96.1 0.023 4.9E-07 34.7 5.3 33 374-407 11-43 (47)
392 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 1.2 2.7E-05 41.6 20.9 45 272-318 306-350 (415)
393 PF07995 GSDH: Glucose / Sorbo 96.1 1.1 2.4E-05 41.0 22.4 248 127-400 3-330 (331)
394 KOG2280 Vacuolar assembly/sort 95.9 1.7 3.6E-05 42.9 19.2 183 146-350 62-248 (829)
395 COG5167 VID27 Protein involved 95.9 1.3 2.8E-05 41.7 17.6 152 184-349 472-633 (776)
396 PF10647 Gmad1: Lipoprotein Lp 95.9 1.1 2.3E-05 39.3 17.7 163 229-401 25-192 (253)
397 PHA03098 kelch-like protein; P 95.7 0.81 1.8E-05 45.1 17.1 103 240-349 390-512 (534)
398 KOG1916 Nuclear protein, conta 95.6 0.0061 1.3E-07 60.0 1.8 135 114-261 169-326 (1283)
399 cd00216 PQQ_DH Dehydrogenases 95.6 2.5 5.5E-05 41.0 22.7 154 193-352 112-323 (488)
400 KOG1916 Nuclear protein, conta 95.5 0.0032 6.9E-08 61.9 -0.5 108 123-245 130-242 (1283)
401 COG3204 Uncharacterized protei 95.4 1.6 3.6E-05 38.1 16.2 172 225-407 83-265 (316)
402 PF08728 CRT10: CRT10; InterP 95.3 1.6 3.6E-05 43.4 17.3 117 229-347 102-245 (717)
403 PRK10115 protease 2; Provision 95.3 3.9 8.4E-05 41.6 31.6 200 127-348 128-344 (686)
404 PHA03098 kelch-like protein; P 95.1 1.2 2.5E-05 44.0 15.9 152 240-413 343-519 (534)
405 PF08728 CRT10: CRT10; InterP 95.1 2.1 4.6E-05 42.7 17.1 121 181-303 103-245 (717)
406 KOG2377 Uncharacterized conser 95.0 2.4 5.1E-05 39.4 15.9 123 123-260 64-187 (657)
407 PF10313 DUF2415: Uncharacteri 94.5 0.15 3.3E-06 30.2 4.9 32 274-305 1-34 (43)
408 PF14727 PHTB1_N: PTHB1 N-term 94.5 4.4 9.6E-05 38.1 26.1 157 135-303 34-203 (418)
409 PF12234 Rav1p_C: RAVE protein 94.4 3.1 6.8E-05 41.1 16.5 123 275-406 31-157 (631)
410 PF05694 SBP56: 56kDa selenium 94.4 4.3 9.4E-05 37.9 23.9 198 137-351 87-345 (461)
411 PF10313 DUF2415: Uncharacteri 94.4 0.16 3.4E-06 30.1 4.7 32 126-157 1-34 (43)
412 PF14870 PSII_BNR: Photosynthe 94.3 2.4 5.3E-05 37.9 14.3 159 123-301 142-301 (302)
413 PF12234 Rav1p_C: RAVE protein 94.2 1.4 3E-05 43.5 13.7 114 229-349 31-157 (631)
414 COG5167 VID27 Protein involved 94.2 0.75 1.6E-05 43.2 11.1 144 238-405 478-632 (776)
415 PF10168 Nup88: Nuclear pore c 94.2 7.3 0.00016 39.6 19.7 85 126-212 85-182 (717)
416 PF06433 Me-amine-dh_H: Methyl 94.2 4.2 9.2E-05 36.7 21.8 244 131-411 41-326 (342)
417 PRK10115 protease 2; Provision 94.1 7.6 0.00017 39.5 26.0 203 180-405 128-344 (686)
418 PF14870 PSII_BNR: Photosynthe 94.1 4.2 9.1E-05 36.4 18.4 157 174-345 140-301 (302)
419 KOG2247 WD40 repeat-containing 94.1 0.008 1.7E-07 55.3 -1.6 145 179-339 35-179 (615)
420 PHA02790 Kelch-like protein; P 94.0 3.4 7.4E-05 40.1 16.0 59 240-305 363-424 (480)
421 cd00216 PQQ_DH Dehydrogenases 93.3 8.7 0.00019 37.4 23.1 98 242-351 303-427 (488)
422 TIGR02604 Piru_Ver_Nterm putat 93.0 7.8 0.00017 36.1 26.2 152 126-292 14-201 (367)
423 KOG4499 Ca2+-binding protein R 92.9 5.2 0.00011 33.8 19.5 106 229-336 159-272 (310)
424 PHA02790 Kelch-like protein; P 92.7 8.9 0.00019 37.2 16.7 63 239-305 318-385 (480)
425 PF12657 TFIIIC_delta: Transcr 92.7 1.8 3.8E-05 35.4 10.1 32 376-407 87-123 (173)
426 TIGR02604 Piru_Ver_Nterm putat 92.6 6.8 0.00015 36.5 15.1 105 228-337 14-142 (367)
427 PF00780 CNH: CNH domain; Int 92.5 7.2 0.00016 34.5 19.4 143 193-351 9-168 (275)
428 COG3823 Glutamine cyclotransfe 92.3 5.7 0.00012 33.0 14.3 197 115-336 33-247 (262)
429 TIGR03118 PEPCTERM_chp_1 conse 92.2 8 0.00017 34.3 24.2 216 127-351 24-282 (336)
430 PF14727 PHTB1_N: PTHB1 N-term 92.0 11 0.00024 35.6 18.7 156 188-349 34-205 (418)
431 KOG4460 Nuclear pore complex, 92.0 2.3 5.1E-05 40.2 10.8 87 319-407 105-200 (741)
432 PF03022 MRJP: Major royal jel 91.6 9.7 0.00021 34.0 16.0 182 202-393 35-253 (287)
433 PF05096 Glu_cyclase_2: Glutam 91.5 8.8 0.00019 33.4 22.8 197 115-337 32-250 (264)
434 COG4257 Vgb Streptogramin lyas 90.5 11 0.00024 32.8 15.7 203 180-409 63-266 (353)
435 PF07995 GSDH: Glucose / Sorbo 90.4 5.1 0.00011 36.6 11.8 111 180-294 3-133 (331)
436 KOG4460 Nuclear pore complex, 90.4 6.3 0.00014 37.5 11.9 77 275-352 105-202 (741)
437 KOG4499 Ca2+-binding protein R 90.4 10 0.00022 32.2 18.7 138 227-384 108-263 (310)
438 PF10168 Nup88: Nuclear pore c 90.3 23 0.0005 36.1 25.3 84 178-262 84-183 (717)
439 PF07676 PD40: WD40-like Beta 90.2 1.7 3.7E-05 25.1 5.6 31 315-345 6-38 (39)
440 KOG2247 WD40 repeat-containing 90.1 0.035 7.6E-07 51.3 -2.5 147 229-400 36-183 (615)
441 KOG1983 Tomosyn and related SN 89.9 12 0.00025 39.8 15.0 38 119-157 29-66 (993)
442 PF07676 PD40: WD40-like Beta 89.8 1.7 3.6E-05 25.1 5.4 29 374-402 8-38 (39)
443 PRK13684 Ycf48-like protein; P 89.7 16 0.00035 33.4 17.1 156 125-302 172-329 (334)
444 PF12657 TFIIIC_delta: Transcr 89.6 4.4 9.5E-05 33.0 9.6 31 180-210 87-122 (173)
445 PF14583 Pectate_lyase22: Olig 89.4 18 0.00038 33.5 15.5 152 184-350 41-224 (386)
446 PF14781 BBS2_N: Ciliary BBSom 89.0 8.8 0.00019 29.5 11.9 118 129-259 2-126 (136)
447 COG4590 ABC-type uncharacteriz 88.7 4.4 9.5E-05 37.7 9.5 161 224-407 217-388 (733)
448 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.6 26 0.00057 34.5 23.0 58 251-310 272-338 (527)
449 KOG1897 Damage-specific DNA bi 88.2 35 0.00076 35.4 25.7 156 180-349 776-943 (1096)
450 KOG1900 Nuclear pore complex, 87.9 8.9 0.00019 40.7 12.1 156 245-409 94-276 (1311)
451 KOG1900 Nuclear pore complex, 87.7 7.8 0.00017 41.1 11.6 142 198-351 96-275 (1311)
452 TIGR02276 beta_rpt_yvtn 40-res 87.6 2.5 5.4E-05 24.6 5.3 32 283-315 1-32 (42)
453 KOG1897 Damage-specific DNA bi 87.3 40 0.00086 35.1 26.5 142 249-413 806-950 (1096)
454 KOG1898 Splicing factor 3b, su 87.3 41 0.0009 35.2 18.0 139 249-409 911-1052(1205)
455 PF10214 Rrn6: RNA polymerase 86.9 42 0.00091 34.9 23.2 172 176-350 77-278 (765)
456 PF14761 HPS3_N: Hermansky-Pud 86.6 18 0.00039 30.4 12.8 107 140-259 31-164 (215)
457 PF07569 Hira: TUP1-like enhan 86.5 4.7 0.0001 34.3 8.2 71 274-349 13-96 (219)
458 PRK13684 Ycf48-like protein; P 86.5 26 0.00056 32.1 16.6 155 178-347 172-330 (334)
459 PF05096 Glu_cyclase_2: Glutam 86.3 22 0.00047 31.1 17.2 161 114-293 78-250 (264)
460 PF07569 Hira: TUP1-like enhan 86.2 3.7 8E-05 35.0 7.4 68 189-259 21-96 (219)
461 TIGR03118 PEPCTERM_chp_1 conse 85.8 25 0.00054 31.3 22.2 212 180-410 24-284 (336)
462 PF13449 Phytase-like: Esteras 84.4 32 0.0007 31.4 21.9 215 179-398 20-311 (326)
463 COG5276 Uncharacterized conser 84.1 30 0.00064 30.6 26.3 168 116-307 77-244 (370)
464 TIGR02276 beta_rpt_yvtn 40-res 83.8 5.4 0.00012 23.2 5.4 25 237-261 1-25 (42)
465 PF11715 Nup160: Nucleoporin N 82.5 7.1 0.00015 38.6 8.7 35 318-352 215-252 (547)
466 PLN02193 nitrile-specifier pro 82.3 50 0.0011 32.0 15.3 62 240-305 279-352 (470)
467 PF12768 Rax2: Cortical protei 82.0 37 0.00079 30.2 14.4 116 200-327 15-146 (281)
468 PF14761 HPS3_N: Hermansky-Pud 81.7 30 0.00066 29.1 15.5 105 240-350 29-165 (215)
469 TIGR03606 non_repeat_PQQ dehyd 80.7 55 0.0012 31.4 14.6 62 177-239 28-90 (454)
470 KOG2280 Vacuolar assembly/sort 80.0 71 0.0015 32.3 14.1 52 201-261 64-115 (829)
471 PF11635 Med16: Mediator compl 79.2 84 0.0018 32.6 22.7 204 194-400 65-345 (753)
472 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.1 69 0.0015 31.6 18.3 67 193-262 71-142 (527)
473 KOG1896 mRNA cleavage and poly 78.7 94 0.002 33.4 14.7 129 112-258 1084-1213(1366)
474 PLN02153 epithiospecifier prot 78.6 54 0.0012 30.1 18.5 22 240-261 138-170 (341)
475 PF10214 Rrn6: RNA polymerase 78.1 91 0.002 32.4 26.9 178 122-305 76-277 (765)
476 PLN02193 nitrile-specifier pro 77.7 30 0.00065 33.5 11.0 21 241-261 330-354 (470)
477 KOG3522 Predicted guanine nucl 77.5 11 0.00023 38.1 7.7 150 140-305 549-698 (925)
478 PF02333 Phytase: Phytase; In 76.8 65 0.0014 30.0 18.0 133 179-313 156-299 (381)
479 PLN00033 photosystem II stabil 76.6 69 0.0015 30.2 18.1 115 178-301 280-396 (398)
480 TIGR02171 Fb_sc_TIGR02171 Fibr 75.4 38 0.00083 35.1 11.0 85 249-337 328-418 (912)
481 PF12341 DUF3639: Protein of u 75.4 8.2 0.00018 20.3 3.5 26 126-154 2-27 (27)
482 PF11715 Nup160: Nucleoporin N 74.8 9.5 0.00021 37.8 6.9 38 275-313 216-256 (547)
483 KOG3616 Selective LIM binding 74.6 97 0.0021 31.4 13.0 68 179-257 15-82 (1636)
484 PLN02153 epithiospecifier prot 74.3 63 0.0014 29.6 11.9 19 139-157 87-110 (341)
485 TIGR03606 non_repeat_PQQ dehyd 73.8 87 0.0019 30.1 16.2 56 273-329 29-90 (454)
486 TIGR03548 mutarot_permut cycli 73.6 72 0.0016 29.0 17.9 107 240-350 73-196 (323)
487 COG4590 ABC-type uncharacteriz 73.5 44 0.00095 31.5 10.0 162 125-305 220-387 (733)
488 PF02333 Phytase: Phytase; In 73.4 79 0.0017 29.4 22.1 193 192-406 69-291 (381)
489 PF03022 MRJP: Major royal jel 73.2 69 0.0015 28.6 12.6 131 273-407 60-217 (287)
490 PF13449 Phytase-like: Esteras 73.2 74 0.0016 29.0 22.1 162 125-291 19-231 (326)
491 PF01731 Arylesterase: Arylest 72.6 25 0.00055 24.7 6.7 31 376-406 55-85 (86)
492 PF14781 BBS2_N: Ciliary BBSom 72.3 43 0.00093 25.8 12.4 112 185-304 5-125 (136)
493 TIGR03548 mutarot_permut cycli 71.8 79 0.0017 28.7 20.0 62 240-305 124-195 (323)
494 PF01731 Arylesterase: Arylest 70.3 29 0.00062 24.5 6.5 32 274-305 54-85 (86)
495 PF10395 Utp8: Utp8 family; I 69.9 1.3E+02 0.0028 30.4 21.9 228 112-351 58-308 (670)
496 KOG1520 Predicted alkaloid syn 69.3 96 0.0021 28.7 13.5 35 375-409 219-253 (376)
497 PF08801 Nucleoporin_N: Nup133 68.9 69 0.0015 30.5 11.1 31 375-406 190-220 (422)
498 PF12768 Rax2: Cortical protei 68.4 87 0.0019 27.9 14.0 95 250-350 16-125 (281)
499 PF11635 Med16: Mediator compl 65.1 1.8E+02 0.0039 30.3 20.4 68 274-343 260-345 (753)
500 KOG1520 Predicted alkaloid syn 61.5 1.4E+02 0.003 27.7 12.7 151 193-348 78-249 (376)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-81 Score=539.54 Aligned_cols=414 Identities=69% Similarity=1.173 Sum_probs=386.3
Q ss_pred CchhhhhhhhhhhhhHHHHHhHHhcChhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEE
Q 014433 3 KDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLML 82 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i 82 (424)
+.|++|++.++.+.|+|+|++||||+|||||.+++|.|+||||||+|+|+.......++..|+|++||+|+++.+|+|+|
T Consensus 2 ~~~~~~~~~~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~i 81 (422)
T KOG0264|consen 2 NAEEAMDEALEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVI 81 (422)
T ss_pred chHhhccchhccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEE
Confidence 45778888888889999999999999999999999999999999999999877777889999999999999999999999
Q ss_pred EEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 014433 83 AQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP 162 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~ 162 (424)
+++.+|..........++.+.+++++++...+++++.+++.|.+.|++++++|+++.++|+++..+.|+|||..+....+
T Consensus 82 A~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~ 161 (422)
T KOG0264|consen 82 ASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP 161 (422)
T ss_pred EeecCCCcccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc
Confidence 99999988888778888899989999988899999999999999999999999999999999999999999999987777
Q ss_pred CCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCc
Q 014433 163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEY 241 (424)
Q Consensus 163 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 241 (424)
...+.+.|..++.+|..+.++|+|++.....|++|+.|+.|++||++..... ..+.+...+.+|...|.+++|++....
T Consensus 162 ~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 162 KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED 241 (422)
T ss_pred cccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh
Confidence 6555788899999999999999999999989999999999999999987663 556777889999999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEE
Q 014433 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF 321 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~ 321 (424)
+|++++.|+.+.|||+|+. ..++.....+|.++|+|++|+|.+.++||||+.|++|++||+|++..++.++.+|+..|.
T Consensus 242 lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF 320 (422)
T ss_pred hheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE
Confidence 9999999999999999975 455677778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433 322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 401 (424)
++.|+|+...+||+++.|+.+.|||+......+...+.+++|++++|.+.||...|.++.|+|+.+++|+|+++|+.++|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred EecCCccCCCCCCCCC
Q 014433 402 WQMAENIYHDEDDLPG 417 (424)
Q Consensus 402 w~~~~~~~~~~~~~~~ 417 (424)
|++...++..++....
T Consensus 401 W~~s~~i~~~e~~~~~ 416 (422)
T KOG0264|consen 401 WQMAENIYNPEDPEES 416 (422)
T ss_pred eeccccccCccccCcc
Confidence 9999999988766543
No 2
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=3.6e-47 Score=321.50 Aligned_cols=364 Identities=29% Similarity=0.550 Sum_probs=290.5
Q ss_pred hhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCc-eEEEEEeecCCCCCCCeEEEEEEE-CCCCCCCcccCCCCCcCCCC
Q 014433 29 PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYS-VQKMILGTHTSENEPNYLMLAQVQ-LPLDDSENDARHYDDDRSDF 106 (424)
Q Consensus 29 ~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~-~~~~~~gt~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~ 106 (424)
|..|.+++..+..||||+++.+|+..+..+..|+ +-.++.||++.....|.|.++++. |.......+....+++....
T Consensus 57 psaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edde 136 (440)
T KOG0302|consen 57 PSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDE 136 (440)
T ss_pred HHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccch
Confidence 7799999999999999999999999999999998 457889999999999999998885 32211111100000000000
Q ss_pred CCCCCCCCcEEEEEEeccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCC------CCCCCCCcEEEecCCC
Q 014433 107 GGFGCANGKVQIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPP------LDGACSPDLRLRGHST 179 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~------~~~~~~~~~~~~~h~~ 179 (424)
.. ..+++. .+.++|.+.++.++.++. +..+.|+-+..|.|+||++........ ......++.++.+|..
T Consensus 137 dD---~~P~~~-~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~ 212 (440)
T KOG0302|consen 137 DD---RKPQIE-MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG 212 (440)
T ss_pred hh---cccccc-ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc
Confidence 00 123333 567899999999999986 455888889999999999976433221 2245678899999999
Q ss_pred ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
..++|+|||...+.|++|..-+.|++|...++.- .+ -...+.+|+..|.+++|+|....+|++|+.||+|+|||+|.
T Consensus 213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--~v-d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--KV-DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cceeeecccccccccccCccccceEeeeeccCce--ee-cCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 9999999998777799999999999999887532 21 12345679999999999999999999999999999999999
Q ss_pred CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--CCcceEecCCCCCEEEEEEcCCCCcEEEEEE
Q 014433 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--STALHTFDSHKEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~ 337 (424)
+.....+ ..++|.+.|+.|.|+..-. +||+|+.||+++|||+|.. ++|+..|+.|+.+|+++.|+|.....|++++
T Consensus 290 ~~~~~~~-~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 290 GPKKAAV-STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCcccee-EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc
Confidence 8643333 4489999999999999887 8999999999999999963 5789999999999999999999888999999
Q ss_pred CCCeEEEeeCCCCCcc-----cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 338 LGRRLMVWDLSRIDEE-----QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 338 ~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
.|.+|.|||+...... .......+.|++++|.++|.+ .+..+.|+++-+.++++.+.|| +.||.
T Consensus 368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-HhhhheeccCCCCeEEEecccc-eeEEE
Confidence 9999999999875431 112223467899999999866 4999999999999999999999 56665
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-44 Score=303.31 Aligned_cols=251 Identities=21% Similarity=0.429 Sum_probs=220.9
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+|.++|.|++|+|++. .||+|+.|.++++||+.+ ..+..+.++|...|.|++|+|+++ .||+|+.||+
T Consensus 113 GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~T----------eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~ 180 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDT----------ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGS 180 (480)
T ss_pred CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCC----------CCcceeecCCccEEEEEEECCCcc-hhhccccCCe
Confidence 6999999999999886 899999999999999998 678899999999999999999999 6999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC----CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH----EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
|++||..+++. ....+.+|...|++++|.|-+ ..++|+++.||.++|||+..+.+ +..+.+|..+|+|
T Consensus 181 I~lwdpktg~~-----~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 181 IRLWDPKTGQQ-----IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---VRTLSGHTASVTC 252 (480)
T ss_pred EEEecCCCCCc-----ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE---EEEeccCccceEE
Confidence 99999988764 345578999999999998742 23788999999999999998665 7788899999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCC----------------------------------------------------
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKI---------------------------------------------------- 306 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~---------------------------------------------------- 306 (424)
+.|--+| +|++|+.|++|++|+....
T Consensus 253 vrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 253 VRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 9997544 7889999999999975431
Q ss_pred --------------------------CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433 307 --------------------------STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 307 --------------------------~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
.+++..+.+|..-|+.+.|||++. ++|+++.|..|++|+.+++
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG---------- 399 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG---------- 399 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCc----------
Confidence 023445667888999999999996 8999999999999999987
Q ss_pred CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
+.+..++||...|+.++|+.|.+ ||++|+.|.+++||++.+..+..
T Consensus 400 ----k~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 400 ----KFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred ----chhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecc
Confidence 66888999999999999999999 89999999999999999987754
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-44 Score=307.08 Aligned_cols=248 Identities=25% Similarity=0.393 Sum_probs=227.0
Q ss_pred EEEEeccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 118 IIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
+....+|.+.|.++.|+|. ...-+|||+.||++++|+++. ..++..+.+|...|..++|+|+|. +|+|
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------e~~l~~l~gH~~RVs~VafHPsG~-~L~T 278 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------ETPLQDLEGHLARVSRVAFHPSGK-FLGT 278 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------CcchhhhhcchhhheeeeecCCCc-eeee
Confidence 3456689999999999997 355799999999999999987 577888999999999999999998 8999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
++.|.+-++||+++... +....+|...|.+++|+++|. ++++|+.|..-+|||+|++.+ +..+.+|..+|
T Consensus 279 asfD~tWRlWD~~tk~E------lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~---im~L~gH~k~I 348 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETKSE------LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC---IMFLAGHIKEI 348 (459)
T ss_pred cccccchhhcccccchh------hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcE---EEEecccccce
Confidence 99999999999988743 444678999999999999996 788999999999999999886 88889999999
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.+|+|+|+|- .||||+.|++++|||+|. ...+.++.+|.+-|+.+.|+|....+|+|++.|++++||...+.
T Consensus 349 ~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~------ 420 (459)
T KOG0272|consen 349 LSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW------ 420 (459)
T ss_pred eeEeECCCce-EEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc------
Confidence 9999999885 799999999999999998 67799999999999999999976689999999999999998875
Q ss_pred CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
.++..+.||.+.|.+++.++++. .|+|++.|.++++|.
T Consensus 421 --------~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 --------SPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred --------ccchhhcCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence 66788899999999999999999 699999999999996
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=293.34 Aligned_cols=247 Identities=26% Similarity=0.449 Sum_probs=215.5
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC----CCceEEE
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLS 196 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s 196 (424)
-.+|..-|.|++|+||++ .||+|+.||.|++||..+. ......+.+|...|++|+|.|- +..+|++
T Consensus 153 ~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg---------~~~g~~l~gH~K~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTG---------QQIGRALRGHKKWITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred ecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCC---------CcccccccCcccceeEEeecccccCCCccceec
Confidence 348999999999999997 7999999999999998772 2334578999999999999874 2237999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-------------
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------- 263 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------- 263 (424)
++.||.|+|||+..+ .++..+.+|+.+|+|+.|--++ ++++|+.|++|++|+...+...
T Consensus 223 ~skDg~vrIWd~~~~------~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~l 294 (480)
T KOG0271|consen 223 SSKDGSVRIWDTKLG------TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHL 294 (480)
T ss_pred ccCCCCEEEEEccCc------eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeee
Confidence 999999999999876 4567788999999999997554 7889999999999987653110
Q ss_pred ---------------------------------------------------------------CCeeeeeccCCCeeEEE
Q 014433 264 ---------------------------------------------------------------KPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 264 ---------------------------------------------------------------~~~~~~~~~~~~v~~v~ 280 (424)
+++..+.+|..-|+.+.
T Consensus 295 alsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~ 374 (480)
T KOG0271|consen 295 ALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS 374 (480)
T ss_pred eccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE
Confidence 34555678889999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
|+|++. ++|+++.|.+|++||-++ ++.+.+|.+|-.+|..++|+.+.+ +|++|+.|.++++|++++.
T Consensus 375 fSPd~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk---------- 441 (480)
T KOG0271|consen 375 FSPDGR-YIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK---------- 441 (480)
T ss_pred ECCCcc-EEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee----------
Confidence 999998 699999999999999999 899999999999999999999985 8999999999999999984
Q ss_pred CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
.+...+.||...|..+.|+|+|. .+++|+.|..+++|.
T Consensus 442 ----Kl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 ----KLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred ----eecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 56677889999999999999999 799999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-43 Score=301.56 Aligned_cols=252 Identities=24% Similarity=0.400 Sum_probs=227.6
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC-CceEEEEe
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-EGHLLSGS 198 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~ 198 (424)
.+++-.++|..+.|++++. +||||+-+|.++||+... +....++.+|...|.++.|+|.. ...+++|+
T Consensus 170 SQ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~----------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQ----------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred hhccCCCcceeeEeecCCC-eEEEeecCCceeEeecCC----------cceeEEEeccccceeeEEEccCCCccceeeec
Confidence 3556778999999999886 899999999999999987 57788999999999999999983 44699999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.||++++|++.+. .++..+.+|...|..++|+|+|++ +++++.|.+-++||++++.. +....+|...|.+
T Consensus 239 ~Dgtvklw~~~~e------~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE------TPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFS 308 (459)
T ss_pred cCCceeeeccCCC------cchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchh---hHhhcccccccce
Confidence 9999999999875 457778899999999999999975 56999999999999999764 5566799999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
++|+|+|. +++||+.|..-+|||+|+ +.++..+.+|..+|.+++|+|+| +.||||+.|++++|||++..
T Consensus 309 iaf~~DGS-L~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r-------- 377 (459)
T KOG0272|consen 309 IAFQPDGS-LAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR-------- 377 (459)
T ss_pred eEecCCCc-eeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc--------
Confidence 99999998 899999999999999999 89999999999999999999999 58999999999999999975
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
..++++.+|.+-|+.|+|+|+..++|+|++.|++++||...+...
T Consensus 378 ------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 378 ------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 447888999999999999996666899999999999999877643
No 7
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-42 Score=275.00 Aligned_cols=298 Identities=24% Similarity=0.436 Sum_probs=255.3
Q ss_pred CCccEEEEccCCCCCCCCCCceEEEEEeecCCC--CCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEE
Q 014433 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE--NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII 119 (424)
Q Consensus 42 ~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (424)
+-=++++|.|..+ .+++++|.+.- .....+.|.++. ..+.+...
T Consensus 9 f~GysvqfSPf~~---------nrLavAt~q~yGl~G~G~L~ile~~-------------------------~~~gi~e~ 54 (311)
T KOG0277|consen 9 FHGYSVQFSPFVE---------NRLAVATAQHYGLAGNGRLFILEVT-------------------------DPKGIQEC 54 (311)
T ss_pred cccceeEeccccc---------chhheeehhhcccccCceEEEEecC-------------------------CCCCeEEE
Confidence 4467899999875 45555553321 122356665552 12356677
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..+.-.+.+..++|++...+.+++++.||+++|||... ...|+..++.|..+|.++.|++.....++++|.
T Consensus 55 ~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~---------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 55 QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM---------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred EeeecccceeEeeecCCCcceEEEEecCceEEEeccCC---------CCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 78888899999999999888999999999999999664 256788999999999999999988778999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|++|++|+...++ .+.++.+|...|...+|+|..+++|++++.|+++++||+|.... ...+..|...+.|+
T Consensus 126 D~TiKLW~~~r~~------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 126 DGTIKLWDPNRPN------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSIEAHNSEILCC 196 (311)
T ss_pred CCceEeecCCCCc------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEEEeccceeEee
Confidence 9999999997663 46778999999999999999999999999999999999998753 44478899999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
.|+..+.++++||+.|+.|+.||+|+...|+..+.+|.-+|..++|||....+||+++.|-+++|||.....
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-------- 268 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-------- 268 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--------
Confidence 999999999999999999999999999999999999999999999999998999999999999999998643
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
.++.+...|+..|.++.|++..+..+++++.|+.++||+.
T Consensus 269 -----s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -----SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4455566789999999999988878999999999999985
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-39 Score=298.28 Aligned_cols=268 Identities=28% Similarity=0.461 Sum_probs=232.3
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC----------CCC-----------CCCCCCCC
Q 014433 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP----------SKP-----------PLDGACSP 170 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~----------~~~-----------~~~~~~~~ 170 (424)
..+.+-.....+-...++|..|++++. +||.|..|..|++|.+.... ..+ ........
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 345566666666778999999999887 89999999999999998411 000 01122233
Q ss_pred cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 250 (424)
..++.+|.++|+++.|+|+.+ +|+++|.|+++++|.+.+. .++..+++|..+|+++.|+|.| +.|||++.|+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~------s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~ 515 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTW------SCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQ 515 (707)
T ss_pred eEEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccc------eeEEEecCCCcceeeEEecCCc-eEEEecCCCc
Confidence 456899999999999999887 8999999999999999766 4577788999999999999997 6789999999
Q ss_pred eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 330 (424)
+.++|.... ..|++.+.+|-+.|.|++|+|+.. ++|+|+.|.+|++||+.+ +..++.|.+|.++|++++|||+|.
T Consensus 516 tArLWs~d~---~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 516 TARLWSTDH---NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeeeccc---CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCc
Confidence 999999988 446888889999999999999887 699999999999999998 788999999999999999999996
Q ss_pred cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+|++|+.||.|+|||+..+ .++..+.+|++.|.++.|+.+|. +||++|.|++|++||+..-..
T Consensus 591 -~LaSg~ed~~I~iWDl~~~--------------~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 591 -YLASGDEDGLIKIWDLANG--------------SLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred -eEeecccCCcEEEEEcCCC--------------cchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcc
Confidence 7999999999999999986 56777889999999999999999 899999999999999976543
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-39 Score=274.77 Aligned_cols=263 Identities=22% Similarity=0.414 Sum_probs=220.7
Q ss_pred CCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeE
Q 014433 105 DFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYG 183 (424)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~ 183 (424)
++..|+...-.++.+ ...|..+|.++.|++++. .+++|+.+|.|++|+... ..+..+.+|. ..|.+
T Consensus 119 EFtLWNg~~fnFEti-lQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnm-----------nnVk~~~ahh~eaIRd 185 (464)
T KOG0284|consen 119 EFTLWNGTSFNFETI-LQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNM-----------NNVKIIQAHHAEAIRD 185 (464)
T ss_pred cEEEecCceeeHHHH-hhhhcccceeEEEccCCC-EEEEcCCCceEEecccch-----------hhhHHhhHhhhhhhhe
Confidence 333344333333322 347999999999999886 899999999999999875 3334455554 89999
Q ss_pred EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC
Q 014433 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS 263 (424)
Q Consensus 184 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~ 263 (424)
++|+|++. .|++|+.||+|+|||....+. ...+.+|.-.|.+++|+|... ++|+++.|..|++||.+++.+
T Consensus 186 lafSpnDs-kF~t~SdDg~ikiWdf~~~ke------e~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~c- 256 (464)
T KOG0284|consen 186 LAFSPNDS-KFLTCSDDGTIKIWDFRMPKE------ERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSC- 256 (464)
T ss_pred eccCCCCc-eeEEecCCCeEEEEeccCCch------hheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcch-
Confidence 99999777 799999999999999976643 344678999999999999875 788999999999999999886
Q ss_pred CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM 343 (424)
Q Consensus 264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~ 343 (424)
+.++..|+..|..+.|+|++. +|+|++.|..+++||+|. -+.+..+++|+..|++++|+|-.+.+|++|+.||.|.
T Consensus 257 --l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 257 --LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred --hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhH-hHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 777788999999999999995 799999999999999996 5778899999999999999999889999999999999
Q ss_pred EeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.|.+.... .+...-.+|...|++++|+|-|. +|++|+.|.++++|.-...
T Consensus 333 h~~v~~~~-------------p~~~i~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 333 HWVVGLEE-------------PLGEIPPAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred EEeccccc-------------cccCCCcccccceeeeeccccce-eEeecCCCcceeeeccCCC
Confidence 99987322 22223357899999999999999 8999999999999976543
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-36 Score=246.52 Aligned_cols=245 Identities=25% Similarity=0.402 Sum_probs=214.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
..-|..++|+|.+. ++|+|+-|....||++.....+ +.......+.+|.+-+.++.|-+++ .|++++.|.++.
T Consensus 97 s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~----g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCa 169 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAE----GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCA 169 (343)
T ss_pred ceeEEEEEECCCCC-eEEecCcCceeEEEeccccccc----ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEE
Confidence 45788999999886 8999999999999999863222 2234456789999999999999854 599999999999
Q ss_pred EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 284 (424)
+||+++++ .+..+.+|.+.|.+++++|...+.|++|+.|+..++||+|.+.. .+.+.+|.+.|++|.|.|+
T Consensus 170 lWDie~g~------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF~ghesDINsv~ffP~ 240 (343)
T KOG0286|consen 170 LWDIETGQ------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTFEGHESDINSVRFFPS 240 (343)
T ss_pred EEEcccce------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEeecccccccceEEEccC
Confidence 99999884 46778899999999999996667888999999999999999865 8899999999999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 285 NEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|. -|++|+.|++.++||+|. .+.+..+.. -..+|++++||..|+ +|.+|..|.++.+||.-.+
T Consensus 241 G~-afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~------------ 305 (343)
T KOG0286|consen 241 GD-AFATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKG------------ 305 (343)
T ss_pred CC-eeeecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecccc------------
Confidence 98 599999999999999998 566666653 346899999999996 7889999999999998764
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
+.+..+.||.+.|+++..+|+|. .++||+.|.+++||.
T Consensus 306 --e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 --ERVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred --ceEEEeeccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 55777889999999999999999 799999999999994
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=247.28 Aligned_cols=260 Identities=23% Similarity=0.329 Sum_probs=220.3
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..+|++.|+.++..+.++.++.+++.|.++.+|++..... ....+++.+.||...|..+..++++. +.++++.|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-----~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD 84 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-----KYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWD 84 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-----ccCceeeeeeccceEecceEEccCCc-eEEecccc
Confidence 4579999999999999889999999999999999987532 23577889999999999999999988 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec--cCCCeeE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVNC 278 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~ 278 (424)
+++++||+.++ +..+.+.+|...|.+++|+++++++ ++|+.|.+|++|++.... ..+... +...|+|
T Consensus 85 ~~lrlWDl~~g------~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~c----k~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 85 GTLRLWDLATG------ESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVC----KYTIHEDSHREWVSC 153 (315)
T ss_pred ceEEEEEecCC------cEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccE----EEEEecCCCcCcEEE
Confidence 99999999887 3567788999999999999998865 599999999999998643 223322 2788999
Q ss_pred EEecCCC-CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 279 LAFNPFN-EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 279 v~~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
+.|+|.. +.+|++++.|++|++||+++ .+....+.+|++.++.+++||+|. ++++|+.||.+.+||++.++
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k------ 225 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK------ 225 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc------
Confidence 9999984 44799999999999999998 788889999999999999999995 89999999999999999863
Q ss_pred CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCCCC
Q 014433 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP 416 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 416 (424)
.++.+ +|...|.+++|+|+..+ |+. ..+..|+||++.++.+.++-..+
T Consensus 226 --------~lysl-~a~~~v~sl~fspnryw-L~~-at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 226 --------NLYSL-EAFDIVNSLCFSPNRYW-LCA-ATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred --------eeEec-cCCCeEeeEEecCCcee-Eee-ccCCceEEEeccchhhhhhcccc
Confidence 34444 56778999999999874 443 34556999999999776654443
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-36 Score=247.71 Aligned_cols=255 Identities=15% Similarity=0.253 Sum_probs=220.8
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+|.+.|.++.|+++.+ .|++++.||.+.|||.-+ ......+.-....|..++|+|.+. ++|+|+.|+
T Consensus 52 kGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~T----------tnK~haipl~s~WVMtCA~sPSg~-~VAcGGLdN 119 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFT----------TNKVHAIPLPSSWVMTCAYSPSGN-FVACGGLDN 119 (343)
T ss_pred cccccceeeeEecCCcC-eEEeeccCCeEEEEEccc----------ccceeEEecCceeEEEEEECCCCC-eEEecCcCc
Confidence 47999999999999886 799999999999999877 334455666678899999999988 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
...||++............+.+.+|.+.+.++.|.+++ ++ ++++.|.+..+||+.+++. +..+.+|.+.|.++++
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~i-lT~SGD~TCalWDie~g~~---~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HI-LTGSGDMTCALWDIETGQQ---TQVFHGHTGDVMSLSL 194 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ce-EecCCCceEEEEEcccceE---EEEecCCcccEEEEec
Confidence 99999998765545555667788999999999999865 45 4999999999999999775 8888999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
.|...+.|++|+.|+..++||+|. +.++++|.+|.+.|++++|.|+|. -+++|+.|+++++||++...+
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~--------- 263 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE--------- 263 (343)
T ss_pred CCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE---------
Confidence 995445899999999999999999 699999999999999999999996 699999999999999998643
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
..++....-..+|++++|+..|+ +|.+|..|..+.|||.-.+.
T Consensus 264 ---~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 264 ---LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ---EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccc
Confidence 33444444566899999999999 78888999999999987653
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=238.59 Aligned_cols=255 Identities=18% Similarity=0.388 Sum_probs=215.7
Q ss_pred EEEEeccC-CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 118 ~~~~~~h~-~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
+.+.+.|+ +.|+++...|+++ .||+++ ...||+||+++ ....|+.++.+|...|+++.|..+|. .+++
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S--------~np~Pv~t~e~h~kNVtaVgF~~dgr-WMyT 100 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNS--------NNPNPVATFEGHTKNVTAVGFQCDGR-WMYT 100 (311)
T ss_pred EEEEEecCccceeeEEEcCCcc-hhhhcc-CCeeEEEEccC--------CCCCceeEEeccCCceEEEEEeecCe-EEEe
Confidence 46678887 5899999999887 677666 46899999998 44567899999999999999999998 8999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
|+.||+++|||++..... +.+ .|.++|+++..+|....|| +|..+|.|++||++....... .+.....+|
T Consensus 101 gseDgt~kIWdlR~~~~q------R~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~--liPe~~~~i 170 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSCQ------RNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHE--LIPEDDTSI 170 (311)
T ss_pred cCCCceEEEEeccCcccc------hhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccc--cCCCCCcce
Confidence 999999999999875432 223 3779999999999987776 999999999999998754221 223445789
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCC-----CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKI-----STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.++...|+|. .++.+...|..++|++-.. -.|+..++.|++.+..+.+||+++ +||+++.|.+++||+....
T Consensus 171 ~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~- 247 (311)
T KOG0315|consen 171 QSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF- 247 (311)
T ss_pred eeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc-
Confidence 9999999998 6888889999999998652 257888999999999999999996 7999999999999999874
Q ss_pred cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
..+-..+.+|...+++.+|+.++.| |++++.|+.+++|++..+..
T Consensus 248 ------------~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 248 ------------FKLELVLTGHQRWVWDCAFSADGEY-LVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred ------------eeeEEEeecCCceEEeeeeccCccE-EEecCCCCceeecccccCce
Confidence 1445667899999999999999995 89999999999999998753
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-36 Score=262.01 Aligned_cols=248 Identities=23% Similarity=0.449 Sum_probs=220.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.....|++++|+.+|. +||+|+.||.++||+... ....++..|+++|.+|.|+..|. +|++++.||+
T Consensus 233 ~~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~t 299 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGT 299 (524)
T ss_pred CccCCcceEEecCCCC-eEEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcCCCC-EEEeccCCcc
Confidence 3457899999999886 899999999999999876 45677889999999999999888 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
+.+||..++. ..+.+..|..+-.++.|-.+. -|++++.||.|+|+.+.... |+.++.+|.++|.++.|+
T Consensus 300 tilwd~~~g~------~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~---P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 300 TILWDAHTGT------VKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR---PVKTFIGHHGEVNALKWN 368 (524)
T ss_pred EEEEeccCce------EEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC---cceeeecccCceEEEEEC
Confidence 9999997763 455566788887889998765 47899999999999998744 688888999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC--------cEEEEEECCCeEEEeeCCCCCccc
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE--------TILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~--------~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|.+. +|+++++|++++||.... ......+.+|...|..+.|+|.++ ..+++++.|++|++||+..+
T Consensus 369 ~tg~-LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---- 442 (524)
T KOG0273|consen 369 PTGS-LLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---- 442 (524)
T ss_pred CCCc-eEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----
Confidence 9998 899999999999999887 788899999999999999999763 47999999999999999885
Q ss_pred CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
.+++.+..|..+|++++|+|+++ .+++|+.||.|.+|+..++.+-.
T Consensus 443 ----------v~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 443 ----------VPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ----------ceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeE
Confidence 67888999999999999999999 59999999999999999986543
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-36 Score=278.21 Aligned_cols=254 Identities=18% Similarity=0.336 Sum_probs=217.8
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
.........+|.++|..++|+|+.+ +|++++.|++||+|.+.+ ......++||..+|+.+.|+|.|- +
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t----------~s~~V~y~GH~~PVwdV~F~P~Gy-Y 507 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDT----------WSCLVIYKGHLAPVWDVQFAPRGY-Y 507 (707)
T ss_pred CCceeEEeecCCCceeeeeeccccc-ceeeccCCcceeeeeccc----------ceeEEEecCCCcceeeEEecCCce-E
Confidence 3445555889999999999999886 899999999999999998 677788999999999999999876 8
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
||||+.|++.++|..... .+++.+.+|-+.|.|++|+|+.. .+++|+.|.+|++||+.++.. ++.+.+|.
T Consensus 508 Fatas~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~ 577 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNS---VRIFTGHK 577 (707)
T ss_pred EEecCCCceeeeeecccC------CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcE---EEEecCCC
Confidence 999999999999998764 56788899999999999999986 557999999999999999885 88889999
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
++|.+++|+|.|. .||+|+.||.|.+||+.+ +.++..+.+|.+.|.++.|+.+|. +||+|+.|.+|++||+......
T Consensus 578 ~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 578 GPVTALAFSPCGR-YLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CceEEEEEcCCCc-eEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence 9999999999998 599999999999999998 789999999999999999999995 8999999999999999765443
Q ss_pred c----------CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE
Q 014433 354 Q----------TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393 (424)
Q Consensus 354 ~----------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 393 (424)
. ......+....++..+.....+|..+.|....- +++.|
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g 703 (707)
T KOG0263|consen 655 LNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG 703 (707)
T ss_pred ccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence 0 001112233456777777788899999987553 45444
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-35 Score=240.88 Aligned_cols=255 Identities=18% Similarity=0.318 Sum_probs=206.1
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
.+.-+|...|..+..++++. +.++++.|+++++||+.. .++...+.+|...|.+++|++++. .+++|+
T Consensus 57 r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~----------g~~t~~f~GH~~dVlsva~s~dn~-qivSGS 124 (315)
T KOG0279|consen 57 RRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLAT----------GESTRRFVGHTKDVLSVAFSTDNR-QIVSGS 124 (315)
T ss_pred eeeeccceEecceEEccCCc-eEEeccccceEEEEEecC----------CcEEEEEEecCCceEEEEecCCCc-eeecCC
Confidence 34457999999999999986 899999999999999998 577889999999999999999988 599999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeec--CCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
.|.+|.+|++.... ...... +.+-|+|+.|+|.. ..+|++++.|++|++||+++-+. ...+.+|.+.
T Consensus 125 rDkTiklwnt~g~c-------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---~~~~~gh~~~ 194 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVC-------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---RTTFIGHSGY 194 (315)
T ss_pred CcceeeeeeecccE-------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---hhcccccccc
Confidence 99999999997542 222222 36789999999984 44778999999999999999664 6677899999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
++.++++|+|. +.++|+.||.+.+||++. ++.+..+. |...|.+++|+|+.. .|+.+ .+..|+|||+........
T Consensus 195 v~t~~vSpDGs-lcasGgkdg~~~LwdL~~-~k~lysl~-a~~~v~sl~fspnry-wL~~a-t~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 195 VNTVTVSPDGS-LCASGGKDGEAMLWDLNE-GKNLYSLE-AFDIVNSLCFSPNRY-WLCAA-TATSIKIWDLESKAVVEE 269 (315)
T ss_pred EEEEEECCCCC-EEecCCCCceEEEEEccC-CceeEecc-CCCeEeeEEecCCce-eEeec-cCCceEEEeccchhhhhh
Confidence 99999999998 799999999999999998 66676665 588999999999873 45444 455599999998765444
Q ss_pred CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
......++ ......-.-.+++|+++|. .|++|-.|+.|++|.+..
T Consensus 270 l~~d~~g~-----s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 270 LKLDGIGP-----SSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccccccc-----ccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence 33222222 1111222356799999999 688899999999998753
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=263.52 Aligned_cols=251 Identities=24% Similarity=0.452 Sum_probs=217.6
Q ss_pred cEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
+|.-.....-...|+.++|.|+|+ .|++|+..|.+.+|+... ..-...++.|..+|.++.|++++. .+
T Consensus 86 Kf~h~s~NKvkc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~----------fnFEtilQaHDs~Vr~m~ws~~g~-wm 153 (464)
T KOG0284|consen 86 KFVHTSSNKVKCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTS----------FNFETILQAHDSPVRTMKWSHNGT-WM 153 (464)
T ss_pred ceEeccccccccceeeEEEcCCCc-eeEeecccccEEEecCce----------eeHHHHhhhhcccceeEEEccCCC-EE
Confidence 444333344556899999999997 688999999999999866 333445788999999999999988 79
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
++|+.+|.|++|+.+... ++.++.|. ..|++++|+|.+. .|+++++||+|+|||.+..+. -..+.+|.
T Consensus 154 iSgD~gG~iKyWqpnmnn-------Vk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke---e~vL~GHg 222 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMNN-------VKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE---ERVLRGHG 222 (464)
T ss_pred EEcCCCceEEecccchhh-------hHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch---hheeccCC
Confidence 999999999999987542 33344454 8999999999664 678999999999999998664 45568999
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
-.|.|++|+|... ++|+|+.|..|++||.|+ +.++.++..|+..|..+.|+|++ .+|+++|.|..++++|++..
T Consensus 223 wdVksvdWHP~kg-LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~m--- 296 (464)
T KOG0284|consen 223 WDVKSVDWHPTKG-LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTM--- 296 (464)
T ss_pred CCcceeccCCccc-eeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHh---
Confidence 9999999999887 899999999999999999 89999999999999999999999 58999999999999999965
Q ss_pred cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
.-++.+++|...|+++.|+|-...+|++|+.||.|..|.+.
T Consensus 297 -----------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 297 -----------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred -----------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 33677899999999999999988899999999999999987
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.8e-35 Score=236.69 Aligned_cols=252 Identities=23% Similarity=0.397 Sum_probs=214.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...|.+++|+|.++ +||+|+.|.++.||.-.. +.......+.||..+|.+++|+++|. +||+|+.|.+
T Consensus 59 ~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~--------~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKS 128 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGR-YLASASFDATVVIWKKED--------GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKS 128 (312)
T ss_pred cchheeeeeeecCCCc-EEEEeeccceEEEeecCC--------CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCe
Confidence 6999999999999997 999999999999999775 55777889999999999999999998 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|-||.+... ..+.+...++.|...|..+.|+|... +|++++.|.+|++|+-..+......+++.+|...|.+++|+
T Consensus 129 VWiWe~ded---dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 129 VWIWEIDED---DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD 204 (312)
T ss_pred EEEEEecCC---CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence 999999854 56678889999999999999999876 67799999999999887555466788999999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+.|.+ |++++.|++++||-+... .-..|+.++..+.|. ++ +||+++.|+.|++|.-.......
T Consensus 205 ~~G~r-l~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p-------- 267 (312)
T KOG0645|consen 205 NIGSR-LVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEP-------- 267 (312)
T ss_pred CCCce-EEEecCCcceEeeeeccC-----cchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCc--------
Confidence 99974 999999999999987641 112477899999999 54 69999999999999876432111
Q ss_pred CCee-eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 363 PPEL-LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 363 ~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
...+ ......|...|++++|+|..+.+|++++.||.|++|.+.
T Consensus 268 ~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 268 SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1122 234567888999999999755689999999999999875
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.9e-36 Score=251.57 Aligned_cols=252 Identities=26% Similarity=0.403 Sum_probs=223.5
Q ss_pred cEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 115 KVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 115 ~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
+.++.+.+ +|.+-|.|+++.|.+. .+|+|+.|++|+|||+.+ .+...++.||...|..+++++-.+ +
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlat----------g~LkltltGhi~~vr~vavS~rHp-Y 207 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLAT----------GQLKLTLTGHIETVRGVAVSKRHP-Y 207 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEccc----------CeEEEeecchhheeeeeeecccCc-e
Confidence 44444444 6999999999999765 899999999999999998 566788999999999999999888 8
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
+++++.|+.|+.||++.+ +.++.+.+|-+.|.+++.+|.-+ ++++|+.|.+++|||+|+.. .+..+.+|.
T Consensus 208 lFs~gedk~VKCwDLe~n------kvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~---~V~~l~GH~ 277 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYN------KVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA---SVHVLSGHT 277 (460)
T ss_pred EEEecCCCeeEEEechhh------hhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc---eEEEecCCC
Confidence 999999999999999877 35677889999999999999876 66799999999999999965 488999999
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
.+|.++.+.|.++ .+++|+.|++|++||++. ++...++..|+..|.+++.+|.. +++|+++.|. |+-|++..+
T Consensus 278 ~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g--- 350 (460)
T KOG0285|consen 278 NPVASVMCQPTDP-QVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEG--- 350 (460)
T ss_pred CcceeEEeecCCC-ceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCcc---
Confidence 9999999999888 599999999999999998 78888899999999999999988 4788988886 999999875
Q ss_pred cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
..+..+.+|+..|+.++.+.|+ ++++|++.|.+.+||..++.
T Consensus 351 -----------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 351 -----------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -----------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCc
Confidence 4455678999999999999887 58899999999999999874
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.9e-35 Score=240.66 Aligned_cols=254 Identities=21% Similarity=0.405 Sum_probs=218.8
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
....+|.+.|+.++|+|+|. +||+|+.|..|.+|++.. .++....+++|.++|..+.|.+++. .+++++
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~g---------dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~g 109 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYG---------DCENFWVLKGHSGAVMELHGMRDGS-HILSCG 109 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccc---------cccceeeeccccceeEeeeeccCCC-EEEEec
Confidence 44668999999999999887 899999999999999765 2566778899999999999999988 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|.+|+.||+++++. .+.+++|..-|+.+.-+.-|..++.+++.||++++||+|+... ++.+ ..+-.+++
T Consensus 110 tDk~v~~wD~~tG~~------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t~-~~kyqltA 179 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKR------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKTF-ENKYQLTA 179 (338)
T ss_pred CCceEEEEeccccee------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhcc-ccceeEEE
Confidence 999999999999854 5667789999999998878899999999999999999998664 3332 23678999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+.|...+. -+.+|+-|+.|++||+|. .....++.+|..+|+.+..+|+|. ++.+-+.|.++++||++.....
T Consensus 180 v~f~d~s~-qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~----- 251 (338)
T KOG0265|consen 180 VGFKDTSD-QVISGGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPS----- 251 (338)
T ss_pred EEeccccc-ceeeccccCceeeecccc-CcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCC-----
Confidence 99999888 488999999999999998 788999999999999999999996 6889999999999999875432
Q ss_pred cCCCCCeeeEEEcCCCC----CcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 359 AEDGPPELLFIHGGHTS----KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.+++..+.+|.. ....++|+|+++ .+..|+.|..+++||....
T Consensus 252 -----~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 252 -----QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR 298 (338)
T ss_pred -----CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc
Confidence 244666666542 356789999999 5899999999999999874
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=248.88 Aligned_cols=254 Identities=22% Similarity=0.386 Sum_probs=228.2
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
.+..+|..+|+.+-|+|.-. ++++++.|++|++||..+ ......+++|...+.+|+|+..|. +|++++
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~t----------g~~e~~LrGHt~sv~di~~~a~Gk-~l~tcS 169 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTET----------GELERSLRGHTDSVFDISFDASGK-YLATCS 169 (406)
T ss_pred hhhhccccceeeeeeccCce-EEEEecCCceEEEEEccc----------hhhhhhhhccccceeEEEEecCcc-EEEecC
Confidence 44567999999999999776 899999999999999988 344778999999999999999887 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|-.+.+||..+. ..+++...+|...|.+++|-|.+.++ ++++.|.+|+.|++.++.+ +.++.+|...|..
T Consensus 170 sDl~~~LWd~~~~-----~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~c---v~t~~~h~ewvr~ 240 (406)
T KOG0295|consen 170 SDLSAKLWDFDTF-----FRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYC---VKTFPGHSEWVRM 240 (406)
T ss_pred CccchhheeHHHH-----HHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEeccccee---EEeccCchHhEEE
Confidence 9999999999743 35667778899999999999999755 5999999999999999875 8889999999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC--------------CCcEEEEEECCCeEEE
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK--------------NETILASCCLGRRLMV 344 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~--------------~~~~l~s~~~dg~i~i 344 (424)
++.+.+|. ++|+++.|.+|++|-+.+ +++...+..|+.+|-+++|.|. +..++++++.|++|++
T Consensus 241 v~v~~DGt-i~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 241 VRVNQDGT-IIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEecCCee-EEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 99999997 899999999999999998 7788899999999999999874 2258999999999999
Q ss_pred eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
||+.++ .+++++.||.+.|.+++|+|.|+| |+|+.+|+++++||++...+.
T Consensus 319 wdv~tg--------------~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 319 WDVSTG--------------MCLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred EeccCC--------------eEEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceee
Confidence 999986 789999999999999999999995 889999999999999988654
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-35 Score=234.25 Aligned_cols=249 Identities=21% Similarity=0.412 Sum_probs=211.6
Q ss_pred eEEEecCCCCcEEEEEe-------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 129 NRARYMPQNPFLIATKT-------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.++.|+|--.+.||++. ..|++.|.++... .......-..-...+..++|+++..+.+++++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~--------~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP--------KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCC--------CCeEEEEeeecccceeEeeecCCCcceEEEEecCc
Confidence 46889985434444433 3689999998641 11111222235678999999999888999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
++++||+.... .++..++.|...|.++.|++..+..+++++-|++|++|+...+.. +.++.+|...|...+|
T Consensus 84 SLrl~d~~~~s-----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S---v~Tf~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 84 SLRLFDLTMPS-----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS---VQTFNGHNSCIYQAAF 155 (311)
T ss_pred eEEEeccCCCC-----cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc---eEeecCCccEEEEEec
Confidence 99999964332 477889999999999999998888888999999999999988664 8889999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|..++++++++.|+++++||+|.+++.+. +..|...|.++.|+...+.+|+||+.|+.|++||+++.+
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---------- 224 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---------- 224 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----------
Confidence 999999999999999999999999877665 899999999999999888999999999999999999865
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
..++.+.+|.-.|..++|+|....+|+|++.|-+++|||+..+
T Consensus 225 ---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 225 ---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 4578889999999999999998889999999999999999744
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.8e-33 Score=243.74 Aligned_cols=262 Identities=19% Similarity=0.399 Sum_probs=214.1
Q ss_pred CcEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceeEEEecCC
Q 014433 114 GKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKF 189 (424)
Q Consensus 114 ~~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~ 189 (424)
++|+....+ .|..-|+|++|+|+|. ++|+.+.||+|.+||=.+ ...+..+. +|.+.|++|+|+|+
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~-~Fat~gsDgki~iyDGkt----------ge~vg~l~~~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKT----------GEKVGELEDSDAHKGSIFALSWSPD 246 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCC-eEEEecCCccEEEEcCCC----------ccEEEEecCCCCccccEEEEEECCC
Confidence 345544444 5889999999999987 899999999999999877 44455565 89999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcc-------------------------------------cceeeeecCCccEee
Q 014433 190 KEGHLLSGSDDAQICLWDINAAPKNKSL-------------------------------------EAMQIFKVHEGVVED 232 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~ 232 (424)
+. .|++++.|.+++|||+.+.+...++ .++..+.+|...|++
T Consensus 247 s~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 247 ST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred Cc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 98 6999999999999999876543221 345667889999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-------------------------------------------------
Q 014433 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------------------------------------- 263 (424)
Q Consensus 233 ~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------------------------------------- 263 (424)
+..++++.+++ +|+.||.|.-||..++...
T Consensus 326 Ltv~~d~~~i~-SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 326 LTVSPDGKTIY-SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred EEEcCCCCEEE-eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec
Confidence 99999997655 9999999999998654211
Q ss_pred -------------------------------------------------------------------------CCeeeee
Q 014433 264 -------------------------------------------------------------------------KPVQSVV 270 (424)
Q Consensus 264 -------------------------------------------------------------------------~~~~~~~ 270 (424)
.......
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee
Confidence 1112234
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.|.++|++++++|++. +||+|...+.+.+||+.+.......+..|...|.+++|+|+.. ++|+|+.|-+|.||++...
T Consensus 485 ~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred cccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence 5888999999999998 6999999999999999885454555667999999999999995 8999999999999999874
Q ss_pred CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
. ..+.....|...|+.+.|-.+.. +++++.|..|++|++.
T Consensus 563 ~-------------~~i~iknAH~~gVn~v~wlde~t--vvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 563 A-------------KHIIIKNAHLGGVNSVAWLDEST--VVSSGQDANIKVWNVT 602 (603)
T ss_pred h-------------hheEeccccccCceeEEEecCce--EEeccCcceeEEeccc
Confidence 3 44666678988899999987654 8888999999999874
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=223.08 Aligned_cols=256 Identities=20% Similarity=0.383 Sum_probs=215.1
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceeEEEecCCCCceE
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l 194 (424)
+.+...-+|.+.+..++|+|-...+||+|+.|..|+||+.... ........+ .+|+..|.+++|+|.|+ +|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------~s~~ck~vld~~hkrsVRsvAwsp~g~-~L 76 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------DSWTCKTVLDDGHKRSVRSVAWSPHGR-YL 76 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------CcEEEEEeccccchheeeeeeecCCCc-EE
Confidence 3445556799999999999972348999999999999998841 112222223 36999999999999998 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
++||.|.++.||.-.. ..++++..+.+|...|.+++|+++|. +||+++.|..|-||.+........+..++.|..
T Consensus 77 a~aSFD~t~~Iw~k~~----~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 77 ASASFDATVVIWKKED----GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred EEeeccceEEEeecCC----CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 9999999999998654 45577889999999999999999986 678999999999999997776667788899999
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCC--CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRK--ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
.|..+.|+|... +|+++++|.+|++|+-.. ...+++++.+|...|.+++|++.|. .|++++.|++++||.....-
T Consensus 152 DVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 152 DVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred cccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccCc-
Confidence 999999999877 899999999999998662 2367899999999999999999995 69999999999999865321
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
..-|...++.++|. ++ +|+|++.|+.|+++.-...
T Consensus 229 -----------------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 229 -----------------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDS 263 (312)
T ss_pred -----------------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCC
Confidence 13467789999998 43 7999999999999988754
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-34 Score=254.51 Aligned_cols=251 Identities=23% Similarity=0.357 Sum_probs=222.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...|.++.|+|..+ .++++-.+|.|.||+.++ ...+..+.-..-+|.+..|-+... .+++|+.|..
T Consensus 11 ~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyet----------qtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~ 78 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYET----------QTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQ 78 (794)
T ss_pred ccCCceeeeecCCCCc-eEEEeeecCeeEEEeccc----------ceeeeeeeecccchhhheeeeccc-eEEEecCCce
Confidence 4888999999999998 566678899999999998 345566777778899999988555 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|+||+.++.. .+..+..|.+.|.+++.||..++++ ++++|-+|++||-...- ...+.+.+|...|.+++|+
T Consensus 79 IrVfnynt~e------kV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~w--a~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 79 IRVFNYNTGE------KVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEW--ACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred EEEEecccce------eeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCce--eeeeEEcCcceEEEEEEec
Confidence 9999998874 4677889999999999999999765 99999999999998653 4577889999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC-CcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN-ETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
|...+.||+++-|++|++|.+.+ ..+..++.+|...|+++.+-+.| +.+|++|+.|.+|+|||..+.
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----------- 217 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----------- 217 (794)
T ss_pred CCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-----------
Confidence 99988999999999999999998 68999999999999999998865 237999999999999999885
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
.++.++.||...|+.+.|+|.-+ +|+||++||+++||+-.+-.++
T Consensus 218 ---~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 218 ---SCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ---HHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh
Confidence 66778899999999999999999 8999999999999998775544
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.9e-35 Score=253.69 Aligned_cols=254 Identities=21% Similarity=0.326 Sum_probs=215.4
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
++-.+...-+|+..|+++.|.|-..+||++|+.|+.|+||++.. ....+.++.+|..+|.+++|++.|. .
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------~~~~lrtf~gH~k~Vrd~~~s~~g~-~ 272 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------DRRCLRTFKGHRKPVRDASFNNCGT-S 272 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------CcceehhhhcchhhhhhhhccccCC-e
Confidence 44455666689999999999996557999999999999999976 2566788999999999999999998 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
|++++.|+.|++||+++++.. ..+. -...++++.|+|++.++|++|+.|+.|+.||+|+++. ++.+..|-
T Consensus 273 fLS~sfD~~lKlwDtETG~~~------~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hL 342 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVL------SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHL 342 (503)
T ss_pred eeeeecceeeeeeccccceEE------EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHHHhhh
Confidence 999999999999999998543 2232 3457899999999989999999999999999999885 77778899
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------------------------------------
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-------------------------------------------- 309 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-------------------------------------------- 309 (424)
+.|..+.|-+.|++ +++.+.|++++||+.+.+-..
T Consensus 343 g~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 343 GAILDITFVDEGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hheeeeEEccCCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 99999999999985 889999999999998752100
Q ss_pred -ceEecCCC--CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014433 310 -LHTFDSHK--EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 310 -~~~~~~h~--~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
...+.+|. +--..+.|||+|+ +|++|+.||.+.+||.++. .++..+.+|...+..+.|+|..
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~--------------kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTT--------------KLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhh--------------hhhhccccCCcceEEEEecCCC
Confidence 11223343 3457799999996 7999999999999999874 6677788999999999999998
Q ss_pred CcEEEEEeCCCcEEEEe
Q 014433 387 DWVISSVAEDNILQIWQ 403 (424)
Q Consensus 387 ~~~l~s~~~dg~i~vw~ 403 (424)
+-.+||++.||.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 88899999999999996
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=223.29 Aligned_cols=246 Identities=21% Similarity=0.278 Sum_probs=212.1
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-.|+++|.+++|+-+|. +.++++.|.+|++|+... ...+.++.+|..+|..++.+.++. .|++|+.|.
T Consensus 14 ~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~r----------g~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk 81 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLR----------GALIKTYSGHGHEVLDAALSSDNS-KFASCGGDK 81 (307)
T ss_pred cccccceEEEEEccCCC-EEEEcCCCceEEeecccc----------cceeeeecCCCceeeecccccccc-ccccCCCCc
Confidence 46899999999999996 788889999999999877 577889999999999999999887 599999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
.|.+||+++++ ..+.+.+|.+.|+.++|+.... ++++|+.|.++++||.|+.. ..|++.+......|.+|..
T Consensus 82 ~v~vwDV~TGk------v~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 82 AVQVWDVNTGK------VDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred eEEEEEcccCe------eeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEe
Confidence 99999999984 4677889999999999998765 77899999999999999877 5788888888899999998
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+. +.+++|+.||+++.||+|. +.....+- ..+|++++|++++. ..++++.|+++++.|-.++
T Consensus 154 ~~---heIvaGS~DGtvRtydiR~-G~l~sDy~--g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tG----------- 215 (307)
T KOG0316|consen 154 AE---HEIVAGSVDGTVRTYDIRK-GTLSSDYF--GHPITSVSFSKDGN-CSLASSLDSTLRLLDKETG----------- 215 (307)
T ss_pred cc---cEEEeeccCCcEEEEEeec-ceeehhhc--CCcceeEEecCCCC-EEEEeeccceeeecccchh-----------
Confidence 74 4699999999999999998 55444443 46899999999995 7888999999999998886
Q ss_pred CCCeeeEEEcCCCCCcc--eEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 362 GPPELLFIHGGHTSKIS--DFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+++..+.||.+.-+ +.+++.... .+++|++||.|.+||+.....
T Consensus 216 ---klL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 216 ---KLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred ---HHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecccee
Confidence 67778888876543 456666666 699999999999999987643
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=250.59 Aligned_cols=267 Identities=21% Similarity=0.333 Sum_probs=216.6
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
-++++.+|...+++++++|||+ ++|||+.||.|+|||... ..+..++..|+..|+++.|+..+. .+++
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~S----------gfC~vTFteHts~Vt~v~f~~~g~-~lls 409 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQS----------GFCFVTFTEHTSGVTAVQFTARGN-VLLS 409 (893)
T ss_pred eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccC----------ceEEEEeccCCCceEEEEEEecCC-EEEE
Confidence 4567789999999999999997 899999999999999987 677889999999999999999887 7999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCCC-eEEEEEcCCCCCCCCeeeeeccCC
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
++.||+|+.||+.....- +++.. ......|++..|.|. ++++|+.|. .|.||++++++. +-.+.+|.+
T Consensus 410 sSLDGtVRAwDlkRYrNf------RTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql---lDiLsGHEg 479 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNF------RTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL---LDILSGHEG 479 (893)
T ss_pred eecCCeEEeeeeccccee------eeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCee---eehhcCCCC
Confidence 999999999999776432 33332 234678899999987 455666554 599999999885 777789999
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
+|.+++|+|.+. +||+|+.|.+|++||+-.....+.++. +...+..++|+|+|+ -||+++.||.|.+||........
T Consensus 480 PVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 480 PVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGK-ELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred cceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCC-eEEEEEecceEEEEEhhhceeec
Confidence 999999999998 799999999999999976445556665 477899999999997 59999999999999998776554
Q ss_pred CCCCcCCCC------CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 355 TPEDAEDGP------PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 355 ~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
..+...+.. ..............+.+++++||. .|++||..+.|++|++.++.+
T Consensus 557 ~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 557 SIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-CILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred cccchhhccccccccceeehhhcccCCceEEEEEcCCCC-EEEecCCcccEEEEECchhhe
Confidence 433322211 111222223346789999999999 688889999999999998865
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=256.69 Aligned_cols=260 Identities=21% Similarity=0.302 Sum_probs=222.5
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.-+|.+.|.++....+| .+||||+.|.++++|.++... ....+.....+|...|.+++++..+..+|+++|.|
T Consensus 361 i~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred EeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc------chhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 34799999999955556 499999999999999984411 22345566789999999999999888899999999
Q ss_pred CcEEEEeCCCCCCCCc---ccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433 201 AQICLWDINAAPKNKS---LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
+++++|++...+.... +........|...|++++.+|+.. +||+|+.|.+.+||++.... ....+.+|+..|.
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw 509 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVW 509 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce---EEEEeeCCccceE
Confidence 9999999987322211 111123456999999999999875 89999999999999999644 4788999999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
|+.|+|... ++||+|.|++|+||.+.+ ..+++++.+|...|..+.|-.++. .|++++.||.|+||++.+.
T Consensus 510 ~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~------- 579 (775)
T KOG0319|consen 510 CVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTN------- 579 (775)
T ss_pred EEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccch-------
Confidence 999999877 899999999999999998 799999999999999999999997 5889999999999999986
Q ss_pred CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.++.++.+|...|++++-+|... +++||+.||.|.+|.=.+...
T Consensus 580 -------eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~~ 623 (775)
T KOG0319|consen 580 -------ECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEEE 623 (775)
T ss_pred -------hhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEeecCcHHH
Confidence 66778899999999999999999 899999999999998665533
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=254.02 Aligned_cols=258 Identities=24% Similarity=0.389 Sum_probs=221.8
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+..+.|..++|......++|+++..+.+++|++.+ .....+.||...|.+++...+|- +|++|+.|.
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~-----------~~c~ii~GH~e~vlSL~~~~~g~-llat~sKD~ 387 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT-----------SYCQIIPGHTEAVLSLDVWSSGD-LLATGSKDK 387 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCC-----------CceEEEeCchhheeeeeecccCc-EEEEecCCc
Confidence 357789999999876667899999999999998876 22237899999999999444464 899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee------eeeccCCC
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ------SVVAHQSE 275 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~ 275 (424)
++++|.++.+. ....++....+|...|.+++++..+..+|++++.|+++++|++...+...+.. ....|...
T Consensus 388 svilWr~~~~~--~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 388 SVILWRLNNNC--SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred eEEEEEecCCc--chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 99999995443 23345667789999999999999999999999999999999998733222211 23579999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|+|++.+|+.+ ++|||+.|.+.+||++.. .....++.+|+..|.++.|+|..+ ++||+|.|++|+||.+.+.
T Consensus 466 IN~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f----- 537 (775)
T KOG0319|consen 466 INCVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF----- 537 (775)
T ss_pred ccceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc-----
Confidence 99999999887 899999999999999996 788999999999999999999984 8999999999999999986
Q ss_pred CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
.++.++.||...|..+.|-.+++ .|+|++.||.+++|+++++.+..
T Consensus 538 ---------SClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 538 ---------SCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred ---------eeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhh
Confidence 77889999999999999999999 68999999999999999997653
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-32 Score=237.70 Aligned_cols=257 Identities=24% Similarity=0.443 Sum_probs=216.1
Q ss_pred CCCCCCCcEEEEEE--------eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC
Q 014433 108 GFGCANGKVQIIQQ--------INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST 179 (424)
Q Consensus 108 ~~~~~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~ 179 (424)
.++...+.+++... -.|.++|.+++|+..|. +|++++.||++.+||..+ ......+.-|..
T Consensus 251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~----------g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHT----------GTVKQQFEFHSA 319 (524)
T ss_pred EEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccC----------ceEEEeeeeccC
Confidence 33444555554443 24999999999999986 899999999999999977 344556777888
Q ss_pred ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
+...+.|-.+.. |++++.||.|+|+.+... .+..++.+|.++|+++.|+|.+. +|++++.|++++||....
T Consensus 320 ~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 320 PALDVDWQSNDE--FATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred CccceEEecCce--EeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCC
Confidence 878999987554 999999999999999765 46777889999999999999986 778999999999999887
Q ss_pred CCCCCCeeeeeccCCCeeEEEecCCCC--------eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433 260 PSVSKPVQSVVAHQSEVNCLAFNPFNE--------WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 331 (424)
... ...+.+|...|..+.|+|.|+ ..+++++.|++|++||+.. +.+++++..|+.+|.+++|+|+++
T Consensus 391 ~~~---~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~- 465 (524)
T KOG0273|consen 391 SNS---VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGR- 465 (524)
T ss_pred Ccc---hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCc-
Confidence 654 677789999999999998753 3689999999999999998 899999999999999999999996
Q ss_pred EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
++|+|+.||.|.||+++.+ .++..+.+ .+.|..++|+.+|.. |..+-.|+.+++-|+.
T Consensus 466 ylAsGs~dg~V~iws~~~~--------------~l~~s~~~-~~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG--------------KLVKSYQG-TGGIFELCWNAAGDK-LGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCCeeEeccccch--------------heeEeecC-CCeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence 7999999999999999885 45555554 445999999999984 6666679999998875
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.3e-34 Score=239.48 Aligned_cols=251 Identities=22% Similarity=0.399 Sum_probs=213.9
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
...+|.+.|.|+.|.. .+|++|++|.+|+|||+++ ..++.++.+|...|..+.|+. +++++++.
T Consensus 232 ~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----------ge~l~tlihHceaVLhlrf~n---g~mvtcSk 295 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSK 295 (499)
T ss_pred hhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC----------CchhhHHhhhcceeEEEEEeC---CEEEEecC
Confidence 3458999999999964 4999999999999999998 677888999999999999974 48999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|.++.+||+.... .+...+.+.+|...|+.+.|+.. ++++++.|.+|++|++.+... +.++.+|...|-|+
T Consensus 296 DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st~ef---vRtl~gHkRGIACl 366 (499)
T KOG0281|consen 296 DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTSTCEF---VRTLNGHKRGIACL 366 (499)
T ss_pred CceeEEEeccCch---HHHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccceee---ehhhhcccccceeh
Confidence 9999999998763 34556678899999999999743 677999999999999999775 77888999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
.+. ++ ++++|+.|.+|++||+.. +.+++.+++|+.-|.++.|... -+++|+.||+|+|||+......+...
T Consensus 367 QYr--~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~-- 437 (499)
T KOG0281|consen 367 QYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPA-- 437 (499)
T ss_pred hcc--Ce-EEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccc--
Confidence 885 44 899999999999999998 8999999999999999999753 48999999999999998865443322
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
...++..+..|.+.|..+.|.. . .|++++.|.+|.|||+..+.-.
T Consensus 438 ---~~~Cl~~lv~hsgRVFrLQFD~--f-qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 ---STLCLRTLVEHSGRVFRLQFDE--F-QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ---cchHHHhhhhccceeEEEeecc--e-EEEeccCCCeEEEEEcCCCCcc
Confidence 1245666778899999999963 3 6888899999999999877543
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=232.62 Aligned_cols=246 Identities=22% Similarity=0.383 Sum_probs=219.6
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..+|...|..|+|+..|. ++|+++.|-.+.+||..+ ....+..+.+|...|.++.|-|.|. ++++++.|
T Consensus 146 LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~---------~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD 214 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDT---------FFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRD 214 (406)
T ss_pred hhccccceeEEEEecCcc-EEEecCCccchhheeHHH---------HHHHHHHhcCcccceeeEEEEecCC-eeeecccc
Confidence 457999999999999886 899999999999999986 1455667889999999999999986 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
.+|+.|++.++ .++..+.+|...|..++.+.+|. ++|+++.|.+|++|-+.++.+ ...+..|..+|.|++
T Consensus 215 ~tik~We~~tg------~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~---k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 215 NTIKAWECDTG------YCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC---KAELREHEHPVECIA 284 (406)
T ss_pred cceeEEecccc------eeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccchh---hhhhhccccceEEEE
Confidence 99999999887 46778889999999999999885 889999999999999998764 456678999999999
Q ss_pred ecCC--------------CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433 281 FNPF--------------NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 281 ~~~~--------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
|.|. +..++++++.|++|++||+.+ +.++.++.+|.+.|..++|+|.|+ +|+++..|+++++||
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWD 362 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEE
Confidence 9774 123799999999999999998 799999999999999999999996 799999999999999
Q ss_pred CCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
+++. +++..+..|...|+++.|+.+.+ .++||+-|..+++|..
T Consensus 363 l~~~--------------~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 363 LKNL--------------QCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccc--------------eeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 9986 56777778999999999999999 6999999999999964
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-32 Score=256.88 Aligned_cols=248 Identities=25% Similarity=0.390 Sum_probs=209.2
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
|...|.++.|+|++. .+++++.++.+++|+.... .......+.+|...|.+++|+|++. ++++|+.|++|
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~--------~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~ti 227 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGI--------KSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTL 227 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccc--------cchhhccccccccceeeeEECCCCc-EEEEecCCceE
Confidence 378999999999997 5999999999999999551 1024455688999999999999998 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~ 283 (424)
++||+.... ..++.+.+|...|++++|+|++ +++++|+.|++|+|||+++++. +..+.+|...|++++|++
T Consensus 228 riwd~~~~~-----~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~---~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 228 RIWDLKDDG-----RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC---VRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EEeeccCCC-----eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---EEeeeccCCceEEEEECC
Confidence 999994332 3567788999999999999999 6888999999999999999664 888899999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCC--cceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433 284 FNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 284 ~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
++. +|++++.|+.|++||+.+ +. ++..+..+... +++++|+|++. +++++..|+.+++||++..
T Consensus 299 d~~-~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~--------- 366 (456)
T KOG0266|consen 299 DGN-LLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSG--------- 366 (456)
T ss_pred CCC-EEEEcCCCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCC---------
Confidence 998 688999999999999998 45 45666666555 99999999996 7889999999999999986
Q ss_pred CCCCCeeeEEEcCCCCC---cceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 360 EDGPPELLFIHGGHTSK---ISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
.......+|... +.+...++.+. ++++|+.|+.|++|++.++.
T Consensus 367 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 367 -----KSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred -----cceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccc
Confidence 344555666553 44455577888 69999999999999999753
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=225.15 Aligned_cols=247 Identities=20% Similarity=0.360 Sum_probs=205.1
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+.....|.+.|.+++.+|+. +++|||+.|..-.||++.+ ......+.+|+..|+++.|+.++. +||+|
T Consensus 57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~----------ge~~~eltgHKDSVt~~~Fshdgt-lLATG 124 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST----------GEFAGELTGHKDSVTCCSFSHDGT-LLATG 124 (399)
T ss_pred eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC----------CcceeEecCCCCceEEEEEccCce-EEEec
Confidence 34556899999999999955 5999999999999999998 345678899999999999999988 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
+.+|.|+||...++.... .+...-..+.-+.|+|.+. +|++|+.||.+-+|.+.+.. ..+.+.+|..+++
T Consensus 125 dmsG~v~v~~~stg~~~~------~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQW------KLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCT 194 (399)
T ss_pred CCCccEEEEEcccCceEE------EeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc---eeeEecCCCCCcc
Confidence 999999999998874322 2223456788899999775 67799999999999998854 3677789999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCc------------------------------------------------
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTA------------------------------------------------ 309 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~------------------------------------------------ 309 (424)
+=.|.|+|++ +++|..||+|++|++.+ +++
T Consensus 195 ~G~f~pdGKr-~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 195 CGEFIPDGKR-ILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred cccccCCCce-EEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 9999999995 88999999999999886 322
Q ss_pred -----------------------------------------------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433 310 -----------------------------------------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 310 -----------------------------------------------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
++....|..+|+.+.|-+ .. +|++++.+|.|
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v 350 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TD-YLLTACANGKV 350 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cc-hheeeccCceE
Confidence 122223566677777777 32 56777777777
Q ss_pred EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
++||.+++ ++++.+.||...|.+++++|+.+ +++|+|.|++.+||++.
T Consensus 351 ~~wDaRtG--------------~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 351 RQWDARTG--------------QLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred Eeeecccc--------------ceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 77877775 78999999999999999999999 89999999999999874
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=240.23 Aligned_cols=237 Identities=19% Similarity=0.357 Sum_probs=206.1
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
....|+|+.+.. ..+++|..|.+|+|||.+. ......+.||++.|.|+.|.. . ++++|+.|.+|
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~----------~~c~~~L~GHtGSVLCLqyd~--r-viisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNS----------LECLKILTGHTGSVLCLQYDE--R-VIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEecccc----------HHHHHhhhcCCCcEEeeeccc--e-EEEecCCCceE
Confidence 346899999854 2699999999999999987 566778999999999999964 3 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~ 283 (424)
++||++++ +++..+-.|...|..+.|+. .++++++.|.++.+||+..+........+.+|...|+.+.|+.
T Consensus 260 rvWDv~tg------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 260 RVWDVNTG------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred EEEeccCC------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence 99999988 45666778999999999984 2567999999999999998775555566789999999999974
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
+ ++++++.|.+|++|++.+ .+.++++.+|+..|.|+.+. + .++++|+.|.+|++||+..+
T Consensus 331 --k-yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G------------- 390 (499)
T KOG0281|consen 331 --K-YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG------------- 390 (499)
T ss_pred --c-eEEEecCCceEEEEeccc-eeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEecccc-------------
Confidence 3 799999999999999998 89999999999999998885 3 58999999999999999986
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.++..+.||..-|.++.|.. + -|++|+.||.|+|||+..+.-
T Consensus 391 -~cLRvLeGHEeLvRciRFd~--k-rIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 391 -ACLRVLEGHEELVRCIRFDN--K-RIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred -HHHHHHhchHHhhhheeecC--c-eeeeccccceEEEEecccccC
Confidence 66888899999999999974 3 599999999999999987743
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=220.03 Aligned_cols=241 Identities=23% Similarity=0.413 Sum_probs=208.6
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+|.++|..+.|++++. .|++++.|.+|+.||..+ .+.....++|..-|+++.-+.-|..++.+++.||+
T Consensus 88 gHsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~t----------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 88 GHSGAVMELHGMRDGS-HILSCGTDKTVRGWDAET----------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred cccceeEeeeeccCCC-EEEEecCCceEEEEeccc----------ceeeehhccccceeeecCccccCCeEEEecCCCce
Confidence 8999999999999986 788899999999999998 67788899999999999977778878999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
+++||+++....+. +. .+-+++++.|...+..++ +|+-|+.|++||+|.... ...+.+|..+|+.+..+
T Consensus 157 ~kl~D~R~k~~~~t------~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~---~~~lsGh~DtIt~lsls 225 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKT------FE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDG---LYTLSGHADTITGLSLS 225 (338)
T ss_pred EEEEeecccchhhc------cc-cceeEEEEEeccccccee-eccccCceeeeccccCcc---eEEeecccCceeeEEec
Confidence 99999987643322 22 356899999999888776 999999999999998775 78889999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCC---CCcceEecCCCC----CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKI---STALHTFDSHKE----EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~~h~~----~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|+|.+ +.+-+.|.++++||+|.. .+++..+.+|.. ....++|+|++. .+.+|+.|..+++||....
T Consensus 226 ~~gs~-llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r----- 298 (338)
T KOG0265|consen 226 RYGSF-LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR----- 298 (338)
T ss_pred cCCCc-cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc-----
Confidence 99995 789999999999999853 234677776543 457889999995 6899999999999998764
Q ss_pred CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 402 (424)
.+++.+.||.+.|+.++|+|..+ +|.+++.|.+|.+=
T Consensus 299 ---------~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lg 335 (338)
T KOG0265|consen 299 ---------RILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLG 335 (338)
T ss_pred ---------cEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEee
Confidence 67889999999999999999999 89999999998863
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-31 Score=241.51 Aligned_cols=321 Identities=19% Similarity=0.335 Sum_probs=236.2
Q ss_pred HhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCC
Q 014433 34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN 113 (424)
Q Consensus 34 ~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (424)
.+|++.+.=|.-+++|.|++ ..+++|. .|-+.|+.. |.+... + -
T Consensus 89 Vlh~f~fk~~v~~i~fSPng----------~~fav~~------gn~lqiw~~--P~~~~~-----------~-------~ 132 (893)
T KOG0291|consen 89 VLHRFNFKRGVGAIKFSPNG----------KFFAVGC------GNLLQIWHA--PGEIKN-----------E-------F 132 (893)
T ss_pred eeEEEeecCccceEEECCCC----------cEEEEEe------cceeEEEec--Ccchhc-----------c-------c
Confidence 45667777788899999987 3455544 355666655 422110 1 1
Q ss_pred CcEEEEE-EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433 114 GKVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (424)
Q Consensus 114 ~~~~~~~-~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 192 (424)
..|...+ -.+|-..|.+|.|+.|.+ +|++|+.|-.++||.++.. .......+.+|...|.++-|..+..
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DSr-~l~~gsrD~s~rl~~v~~~--------k~~~~~~l~gHkd~VvacfF~~~~~- 202 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDSR-LLVTGSRDLSARLFGVDGN--------KNLFTYALNGHKDYVVACFFGANSL- 202 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCCc-eEEeccccceEEEEEeccc--------cccceEeccCCCcceEEEEeccCcc-
Confidence 2344443 457999999999999775 9999999999999999872 2233567889999999999998776
Q ss_pred eEEEEeCCCcEEEEeCCCC------------------------CCCCcc-------------------------------
Q 014433 193 HLLSGSDDAQICLWDINAA------------------------PKNKSL------------------------------- 217 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~------------------------~~~~~~------------------------------- 217 (424)
-+++.+.||.+.+|..... ......
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv 282 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV 282 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence 5999999999999987611 000000
Q ss_pred ---------------cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 218 ---------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 218 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
..++.+.-...+|..++|+..|..+...++.-|++.||+.++... +...++|...+++++++
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---VlKQQgH~~~i~~l~YS 359 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---VLKQQGHSDRITSLAYS 359 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce---eeeccccccceeeEEEC
Confidence 111111112234445555555554433333446667777666443 55567899999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC--
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE-- 360 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-- 360 (424)
|+|+ ++|||+.||.|+|||.++ +-++.+|..|++.|+.+.|+..+. .+++++.||+|+.||+......+++..++
T Consensus 360 pDgq-~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~ 436 (893)
T KOG0291|consen 360 PDGQ-LIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI 436 (893)
T ss_pred CCCc-EEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCce
Confidence 9999 799999999999999998 789999999999999999999995 78999999999999998776554433221
Q ss_pred -------C---------------------CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 361 -------D---------------------GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 361 -------~---------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
+ ...+++-.+.||.++|.+++|+|.+. +|+|++.|.+|++|++-..
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc
Confidence 0 12355666789999999999999999 8999999999999999655
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.6e-32 Score=216.15 Aligned_cols=244 Identities=18% Similarity=0.309 Sum_probs=201.6
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC
Q 014433 136 QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK 215 (424)
Q Consensus 136 ~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 215 (424)
+.+-+||+++.|.+||+|...+ .....+++...+.|+.|...|++. .||+++. ..|++||+++++.
T Consensus 8 d~~viLvsA~YDhTIRfWqa~t----------G~C~rTiqh~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np-- 73 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALT----------GICSRTIQHPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNP-- 73 (311)
T ss_pred CCceEEEeccCcceeeeeehhc----------CeEEEEEecCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCC--
Confidence 3456899999999999999988 567788887778899999999887 5777765 6899999998754
Q ss_pred cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC
Q 014433 216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d 295 (424)
.++..+.+|...|+.+.|..+|+.+ ++|+.||+++|||+|...+ +....|.++|+++..+|+.. -|++|..+
T Consensus 74 --~Pv~t~e~h~kNVtaVgF~~dgrWM-yTgseDgt~kIWdlR~~~~----qR~~~~~spVn~vvlhpnQt-eLis~dqs 145 (311)
T KOG0315|consen 74 --NPVATFEGHTKNVTAVGFQCDGRWM-YTGSEDGTVKIWDLRSLSC----QRNYQHNSPVNTVVLHPNQT-ELISGDQS 145 (311)
T ss_pred --CceeEEeccCCceEEEEEeecCeEE-EecCCCceEEEEeccCccc----chhccCCCCcceEEecCCcc-eEEeecCC
Confidence 3678899999999999999999755 6999999999999999654 33345789999999999877 58899999
Q ss_pred CcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC
Q 014433 296 KTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT 374 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 374 (424)
|.|++||++. ..+...+ .....+|.++...|+|. +|+++...|++++|++-...... +.+.+..++.|.
T Consensus 146 g~irvWDl~~-~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s--------~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 146 GNIRVWDLGE-NSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTAS--------ELEPVHKFQAHN 215 (311)
T ss_pred CcEEEEEccC-CccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccc--------cceEhhheeccc
Confidence 9999999997 3333332 33456899999999996 79999999999999997743222 235666788999
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 413 (424)
+.+..+.++|+++ .|+++|.|.+++||+..+- ++-+.
T Consensus 216 ~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~-~kle~ 252 (311)
T KOG0315|consen 216 GHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF-FKLEL 252 (311)
T ss_pred ceEEEEEECCCCc-EEEeecCCceEEEEecCCc-eeeEE
Confidence 9999999999999 5999999999999999877 44443
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-30 Score=264.47 Aligned_cols=259 Identities=20% Similarity=0.276 Sum_probs=203.6
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
+.+...|.+++|+|....+||+++.||+|+|||+.+ ......+.+|...|++++|+|....+|++|+.||
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 445678999999987556899999999999999986 3556778899999999999985444899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
.|++||++++. .+..+.. ...+.++.|++....+|++|+.||.|++||++.... ++..+.+|...|.++.|
T Consensus 599 ~v~iWd~~~~~------~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 599 SVKLWSINQGV------SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRF 669 (793)
T ss_pred EEEEEECCCCc------EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEE
Confidence 99999998663 2333443 467999999776556788999999999999987542 45667789999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCC-----CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKI-----STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
. ++. .|++++.|++|++||++.. ..++..+.+|...+..++|+|++. +|++|+.|+.|++|+..........
T Consensus 670 ~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 670 V-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred e-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEE
Confidence 7 455 6899999999999999852 256788999999999999999985 8999999999999998654211100
Q ss_pred CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
...... ...-.....|...|.+++|+|++. .|++++.||.|+||++
T Consensus 747 ~~~~~~-~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTID-PVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCC-cccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 000000 000011234566799999999999 6899999999999997
No 41
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-32 Score=218.81 Aligned_cols=271 Identities=17% Similarity=0.295 Sum_probs=222.5
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
+...+|..+++.|+|+.+|. +|.+++.|.++.||-... ...+.++.+|.+.|++++...+.. ++++|+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~n----------GerlGty~GHtGavW~~Did~~s~-~liTGS 71 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLN----------GERLGTYDGHTGAVWCCDIDWDSK-HLITGS 71 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecC----------CceeeeecCCCceEEEEEecCCcc-eeeecc
Confidence 34568999999999999997 899999999999998755 466789999999999999988776 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE----eCCCeEEEEEcCCCC----CCCCeeeee
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV----GDDQYLLIWDLRTPS----VSKPVQSVV 270 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~----~~dg~i~i~d~~~~~----~~~~~~~~~ 270 (424)
.|.++++||+.+++. +..+. ...+|..+.|++.+..++++. +..+.|.++|++... ...|+..+.
T Consensus 72 AD~t~kLWDv~tGk~------la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQ------LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ccceeEEEEcCCCcE------EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 999999999999854 33333 467899999999987555443 245779999999543 234677788
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.+.+.++.+-|.|.++ .|++|..||.|.+||+++..+.+.....|...|+.++++++. .++++++.|.+.++||+++.
T Consensus 145 t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce
Confidence 8889999999999998 589999999999999999767788888999999999999998 48999999999999999887
Q ss_pred CcccCCCCcCC------CC-----------------------------------CeeeEEEcCCCCCcceEEeCCCCCcE
Q 014433 351 DEEQTPEDAED------GP-----------------------------------PELLFIHGGHTSKISDFSWNPCEDWV 389 (424)
Q Consensus 351 ~~~~~~~~~~~------~~-----------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~ 389 (424)
...+....... .| .+-+...+||-++|++++|+|+|+ .
T Consensus 223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-s 301 (327)
T KOG0643|consen 223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-S 301 (327)
T ss_pred eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-c
Confidence 54432211100 00 012334468999999999999999 7
Q ss_pred EEEEeCCCcEEEEecCCccCCC
Q 014433 390 ISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 390 l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
.+||++||.|++.-+..+.++.
T Consensus 302 YsSGGEDG~VR~h~Fd~~YF~~ 323 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDSNYFDF 323 (327)
T ss_pred cccCCCCceEEEEEeccchhhe
Confidence 9999999999999998887754
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.9e-31 Score=266.20 Aligned_cols=260 Identities=20% Similarity=0.301 Sum_probs=207.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.+.|.+++|+|++. ++|+|+.|+.|+||++........ ....+...+. +...+.+++|++....+|++++.||+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc--ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4899999999999886 899999999999999864211100 1112233343 45679999999875558999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|++||+.++ ..+..+.+|...|++++|+|.+..+|++|+.||.|++||++++.. +..+.. ...+.++.|+
T Consensus 557 v~lWd~~~~------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~---~~~~~~-~~~v~~v~~~ 626 (793)
T PLN00181 557 VQVWDVARS------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS---IGTIKT-KANICCVQFP 626 (793)
T ss_pred EEEEECCCC------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---EEEEec-CCCeEEEEEe
Confidence 999999765 345667789999999999986556788999999999999998654 555544 4679999996
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+....+|++|+.||.|++||+++...++..+.+|...|.++.|. ++ .+|++++.|+.|+|||++..... .
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~--------~ 696 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG--------I 696 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc--------c
Confidence 65444799999999999999998555778888999999999997 44 37999999999999999753210 0
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
....+..+.+|...+..++|+|++. +|++|+.|+.|++|+....
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCC
Confidence 1245677889999999999999998 7999999999999997654
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=256.23 Aligned_cols=248 Identities=22% Similarity=0.444 Sum_probs=216.3
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
....|..++|+|..+ .+.++--+|.|++||.+. ...+..+..|.++|.+++|+|..+ +|++|+.|-.|
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM----------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykI 75 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM----------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKI 75 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhh----------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEE
Confidence 456788999999988 778888999999999987 566788999999999999999998 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~ 283 (424)
++|+..+. +++..+.+|-+.|..+.|++.-+.++ ++++|.+|+||+..++++ +..+.+|...|.|..|+|
T Consensus 76 kVWnYk~r------rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~---iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 76 KVWNYKTR------RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKC---IAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred EEEecccc------eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCce---EEEEecCceEEEeeccCC
Confidence 99999876 45667789999999999999998765 999999999999999765 889999999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCC----------------------------cceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433 284 FNEWILATGSTDKTVKLFDLRKIST----------------------------ALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 284 ~~~~~l~tg~~dg~i~iwd~~~~~~----------------------------~~~~~~~h~~~v~~~~~sp~~~~~l~s 335 (424)
... +++++|-|.+|++||+....+ ..+.+.+|...|+-++|+|.-+ ++++
T Consensus 146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS 223 (1202)
T KOG0292|consen 146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS 223 (1202)
T ss_pred ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence 877 799999999999999853210 1345678999999999999987 8999
Q ss_pred EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
|+.|..|++|.++..+. =-+-+.+||.+.|.++-|+|... +|+|.|+|++|+|||+....
T Consensus 224 G~DDRqVKlWrmnetKa------------WEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKA------------WEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cCCcceeeEEEeccccc------------eeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc
Confidence 99999999999975321 12345689999999999999888 89999999999999998763
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.3e-30 Score=228.76 Aligned_cols=280 Identities=25% Similarity=0.417 Sum_probs=225.6
Q ss_pred CCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEE
Q 014433 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ 121 (424)
Q Consensus 42 ~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (424)
-|..++.|.|+. ..++.|+ .++.+.++.+.-. + .....
T Consensus 10 ~~i~~~~~~~~~----------~~l~~~~-----~~g~i~i~~~~~~--------------------------~-~~~~~ 47 (289)
T cd00200 10 GGVTCVAFSPDG----------KLLATGS-----GDGTIKVWDLETG--------------------------E-LLRTL 47 (289)
T ss_pred CCEEEEEEcCCC----------CEEEEee-----cCcEEEEEEeeCC--------------------------C-cEEEE
Confidence 457789999874 4555555 2457777766311 0 12234
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
..|...+..+.|+|++. ++++++.+|.|++|++.. ......+..|...+.++.|++++. ++++++.+|
T Consensus 48 ~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 115 (289)
T cd00200 48 KGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLET----------GECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK 115 (289)
T ss_pred ecCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCc----------ccceEEEeccCCcEEEEEEcCCCC-EEEEecCCC
Confidence 46888899999999885 788899999999999987 345667788999999999999865 788888799
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
.|.+||+.+. .....+..|...+.+++|+|++. ++++++.++.|++||++.++. +..+..|...+.+++|
T Consensus 116 ~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~ 185 (289)
T cd00200 116 TIKVWDVETG------KCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAF 185 (289)
T ss_pred eEEEEECCCc------EEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc---ceeEecCccccceEEE
Confidence 9999999754 23445567888999999999865 666777799999999987653 5566678889999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|++. .+++++.++.|++||++. ..++..+..|...+.+++|+|++ .++++++.||.|++|++...
T Consensus 186 ~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~----------- 251 (289)
T cd00200 186 SPDGE-KLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTG----------- 251 (289)
T ss_pred CCCcC-EEEEecCCCcEEEEECCC-CceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCc-----------
Confidence 99987 477777899999999997 67777887889999999999996 57888888999999999864
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
.....+.+|...|.+++|+|+++ .|++++.||.+++|+
T Consensus 252 ---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ---ECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred ---eeEEEccccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 44555668888999999999988 688999999999996
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=229.55 Aligned_cols=254 Identities=17% Similarity=0.356 Sum_probs=204.3
Q ss_pred cEEEEEE-eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 115 KVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 115 ~~~~~~~-~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
.+++.++ .+|..+|..+.|+|+++ ++++|+.+..+.+||+.+ +...... -.+|...+.+++|.|++. .
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~t--------gd~~~~y-~~~~~~S~~sc~W~pDg~-~ 326 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDT--------GDLRHLY-PSGLGFSVSSCAWCPDGF-R 326 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeeccCCc--------chhhhhc-ccCcCCCcceeEEccCCc-e
Confidence 3555554 57999999999999987 566667778899999998 2222111 123568899999999998 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecC-CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
+++|+.|+.+..||++... +..+++. ...|.+++..++|..++ +.+.|..|++|+..+..... +...
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~-------~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~----lise 394 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNI-------LGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRG----LISE 394 (519)
T ss_pred eEecCCCCcEEEecCCcch-------hhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhc----cccc
Confidence 9999999999999998653 2223322 25699999999999887 55689999999998755422 2234
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
..+|++++.+.++. ++++.-.+..+++||+.. ...+..+.+|+.. +..-+|--..+.++|+|+.|+.|+||+..++
T Consensus 395 ~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 395 EQPITSFSISKDGK-LALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred cCceeEEEEcCCCc-EEEEEcccCeeEEeecch-hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 67899999999998 566777899999999996 6788889888754 5556676655569999999999999999886
Q ss_pred CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.++.++.||...|++++|+|..+.++||+|+||+|+||.+...
T Consensus 473 --------------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 473 --------------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred --------------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 7789999999999999999999999999999999999998754
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-31 Score=246.88 Aligned_cols=260 Identities=19% Similarity=0.317 Sum_probs=203.0
Q ss_pred EEEEEe--ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC---------------------------CC-C----
Q 014433 117 QIIQQI--NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP---------------------------SK-P---- 162 (424)
Q Consensus 117 ~~~~~~--~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~---------------------------~~-~---- 162 (424)
...+.+ .|.+.|.++.|+++|+ +||+|+.||.|+||.+...+ .. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 334444 5999999999999997 89999999999999986600 00 0
Q ss_pred C------------------CCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014433 163 P------------------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 163 ~------------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
. ..-..+|...+.||.+.|.+|.|+.++ +|++++.|.+|++|++.... ++..|.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~------CL~~F~ 407 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE------CLKVFS 407 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc------eeeEEe
Confidence 0 011234567788999999999999753 79999999999999998663 455555
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~ 304 (424)
|...|+|++|+|.+.+.|++|+-||.|+||++...+ +.....-..-|++++|.|+|+ ..++|+.+|.+++|+.+
T Consensus 408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTE 481 (712)
T ss_pred -cCCeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEcc
Confidence 999999999999888889999999999999998765 334444568899999999998 58899999999999998
Q ss_pred CCCCcceEec--CC------CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC-
Q 014433 305 KISTALHTFD--SH------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS- 375 (424)
Q Consensus 305 ~~~~~~~~~~--~h------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 375 (424)
.. +....+. .| ...|+.+.|.|....-+++.+.|..|+|||.+.. .++..++|+..
T Consensus 482 ~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--------------~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 482 GL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--------------DLVHKFKGFRNT 546 (712)
T ss_pred CC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch--------------hhhhhhcccccC
Confidence 63 3332222 11 2279999999977666777889999999999764 44445555432
Q ss_pred -CcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 376 -KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 376 -~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.-....|+.+|++ |+++++|..|+||++...
T Consensus 547 ~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 547 SSQISASFSSDGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence 2356789999995 888899999999998443
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5e-31 Score=249.16 Aligned_cols=247 Identities=25% Similarity=0.433 Sum_probs=208.6
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+|...|++++|+|++. ++++|+.|++|+|||+.. ......++.+|...|++++|+|.+ +++++|+.|+
T Consensus 200 ~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~---------~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~ 268 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD---------DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDG 268 (456)
T ss_pred cccccceeeeEECCCCc-EEEEecCCceEEEeeccC---------CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCC
Confidence 57999999999999997 899999999999999943 245678899999999999999999 5899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC--CeeEE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVNCL 279 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~v 279 (424)
+|+|||++++ ++...+.+|.+.|++++|++++. ++++++.|+.|+|||+.++... ....+..+.. +++++
T Consensus 269 tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 269 TVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSV 340 (456)
T ss_pred cEEEEeccCC------eEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEE
Confidence 9999999885 46778889999999999999987 5568899999999999997721 1233334443 59999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC---EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE---VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.|+|++. ++++++.|+.+++||++. ...+..+.+|... +.+...++.+. ++++|+.|+.|++|++...
T Consensus 341 ~fsp~~~-~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~------ 411 (456)
T KOG0266|consen 341 QFSPNGK-YLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSG------ 411 (456)
T ss_pred EECCCCc-EEEEecCCCeEEEEEccC-CcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCcc------
Confidence 9999998 588999999999999998 6778888888775 33444566775 7999999999999999874
Q ss_pred CCcCCCCCeeeEEEcCC-CCCcceEEeCCCCCcEEEEEe--CCCcEEEEecC
Q 014433 357 EDAEDGPPELLFIHGGH-TSKISDFSWNPCEDWVISSVA--EDNILQIWQMA 405 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~dg~i~vw~~~ 405 (424)
..+..+.+| ...+..++|+|... ++++++ .|+.+++|...
T Consensus 412 --------~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 --------GILQRLEGHSKAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --------chhhhhcCCCCCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 445566788 88899999999998 788887 79999999864
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.3e-31 Score=223.86 Aligned_cols=258 Identities=23% Similarity=0.435 Sum_probs=211.6
Q ss_pred EEEeccCCceeEEEecCCCC--cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 119 IQQINHDGEVNRARYMPQNP--FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~--~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
....+|.++|.+++|.-.++ ..+++++.|.++++|.++...+. ........||...|-+++..+++. .+++
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------~~~~~~~~GHk~~V~sVsv~~sgt-r~~S 210 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------VKALKVCRGHKRSVDSVSVDSSGT-RFCS 210 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------hhHHhHhcccccceeEEEecCCCC-eEEe
Confidence 44568999999888865332 36999999999999999874322 223334459999999999999888 7999
Q ss_pred EeCCCcEEEEeCCCCCC-------------------CCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEc
Q 014433 197 GSDDAQICLWDINAAPK-------------------NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~ 257 (424)
|+.|.+|.+|+...... ...-.++..+.+|..+|.++.|++.+ .+.+++.|.+|+.||+
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDL 288 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEe
Confidence 99999999999332110 12225677789999999999999843 5569999999999999
Q ss_pred CCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--CcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433 258 RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~l~s 335 (424)
.++.. +.++. ....++|++.+|... +||+|+.|..|++||.|+.. .+.+++.+|++.|.++.|+|...++|++
T Consensus 289 etg~~---~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 289 ETGGL---KSTLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ecccc---eeeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 99875 33332 367899999999776 89999999999999999854 3567788999999999999999999999
Q ss_pred EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
++.|+++++||++... ..++.+.+|...|.++.|+..+ +|++||.|+.|+|+.-.
T Consensus 364 ~S~D~t~klWDvRS~k-------------~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTK-------------APLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred EecCCeEEEEEeccCC-------------CcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 9999999999999853 4688999999999999998543 69999999999998754
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.7e-30 Score=228.21 Aligned_cols=246 Identities=27% Similarity=0.451 Sum_probs=207.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.+.|++++|+|++. ++++++.+|.|++|++.. ......+..|...+..+.|+|++. +|++++.+|.
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~ 74 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLET----------GELLRTLKGHTGPVRDVAASADGT-YLASGSSDKT 74 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeC----------CCcEEEEecCCcceeEEEECCCCC-EEEEEcCCCe
Confidence 6999999999999876 788999999999999987 335567788999999999999886 7999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|++|++.... ....+..|...+.++.|++++. ++++++.+|.|++||+++.+. ...+..|...+.+++|+
T Consensus 75 i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 75 IRLWDLETGE------CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC---LTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEEcCccc------ceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEE---EEEeccCCCcEEEEEEc
Confidence 9999998652 3445667888999999999854 666777799999999986543 56666788999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|++. ++++++.++.|++||++. .+++..+..|...|.+++|+|++. .+++++.|+.|++||++..
T Consensus 145 ~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~------------ 209 (289)
T cd00200 145 PDGT-FVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTG------------ 209 (289)
T ss_pred CcCC-EEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCCC------------
Confidence 9876 687887799999999997 677888888999999999999986 5777888999999999864
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
..+..+..|...+..++|+|++. ++++++.||.|++|++.++.
T Consensus 210 --~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 210 --KCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred --ceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCce
Confidence 33445557788899999999976 78888889999999998653
No 50
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-30 Score=226.24 Aligned_cols=221 Identities=22% Similarity=0.429 Sum_probs=195.0
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
+..+|.+.=+.++|+++....+++|+.|+.|++||++...... ....+...+.+|...|..++|++....+|++++.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC---ccccceEEeecCCcceehhhccccchhhheeecC
Confidence 4568888888999999988899999999999999998754431 2356677899999999999999999889999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|+.+.|||+++. ..++.....+|.+.|+|++|+|.+..+||+|+.|++|.+||+|+... ++..+.+|...|.+|
T Consensus 249 d~~L~iwD~R~~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V 322 (422)
T KOG0264|consen 249 DGKLMIWDTRSN----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQV 322 (422)
T ss_pred CCeEEEEEcCCC----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEE
Confidence 999999999963 11345556789999999999999999999999999999999998764 788999999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCC-------------cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKIST-------------ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------------~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
.|+|....+||+++.|+.+.+||+...+. ++....+|...|..+.|+|+.+.++++.+.|+.+.||.
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 99999999999999999999999976432 35667789999999999999999999999999999999
Q ss_pred CCC
Q 014433 347 LSR 349 (424)
Q Consensus 347 ~~~ 349 (424)
+..
T Consensus 403 ~s~ 405 (422)
T KOG0264|consen 403 MAE 405 (422)
T ss_pred ccc
Confidence 873
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5e-30 Score=216.33 Aligned_cols=263 Identities=18% Similarity=0.316 Sum_probs=220.0
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 192 (424)
.+++++ ..-+|-..|..+++++-.+ ++.+++.|+.|+.||+.. .+.++.+.||-..|++|+.+|.-.
T Consensus 182 tg~Lkl-tltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~----------nkvIR~YhGHlS~V~~L~lhPTld- 248 (460)
T KOG0285|consen 182 TGQLKL-TLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY----------NKVIRHYHGHLSGVYCLDLHPTLD- 248 (460)
T ss_pred cCeEEE-eecchhheeeeeeecccCc-eEEEecCCCeeEEEechh----------hhhHHHhccccceeEEEeccccce-
Confidence 445553 3457999999999999888 788889999999999987 567788999999999999999776
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
.|++|+.|.++++||+++. ..+..+.+|..+|..+.+.|.++.++ +|+.|++|++||++.++. ...+..|
T Consensus 249 vl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt---~~tlt~h 318 (460)
T KOG0285|consen 249 VLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKT---MITLTHH 318 (460)
T ss_pred eEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCce---eEeeecc
Confidence 8999999999999999876 35677889999999999999988775 999999999999999875 6777889
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
...|.+++.+|... +||+++.| .|+-|++.. +..++.+.+|+.-|++++...++ ++++|+..|.+.+||.+++..
T Consensus 319 kksvral~lhP~e~-~fASas~d-nik~w~~p~-g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 319 KKSVRALCLHPKEN-LFASASPD-NIKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cceeeEEecCCchh-hhhccCCc-cceeccCCc-cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcc
Confidence 99999999999765 78888876 599999998 77788899999999999999987 789999999999999999876
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
.|...... .|..+ .....|+..+|...+. .|++|..|.+|++|.-....-+
T Consensus 394 yQ~~~t~v-qpGSl-----~sEagI~as~fDktg~-rlit~eadKtIk~~keDe~aT~ 444 (460)
T KOG0285|consen 394 YQRGQTIV-QPGSL-----ESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDEHATE 444 (460)
T ss_pred cccccccc-cCCcc-----ccccceeEEeecccCc-eEEeccCCcceEEEecccccCc
Confidence 55432110 01111 1134689999999998 6899999999999986655433
No 52
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.2e-30 Score=240.75 Aligned_cols=265 Identities=15% Similarity=0.223 Sum_probs=191.4
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC--CCC-CCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL--DGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~--~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-..|+....++++.+ +++++.+.....|+.......... .+. ......+.+|.+.|.+++|+|.+..+|++|+.||
T Consensus 20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 345555666666543 444555666666664331100000 010 1112347899999999999994444899999999
Q ss_pred cEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 202 QICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 202 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
+|++||+...... ....++..+.+|...|.+++|+|.+..+|++++.|+.|+|||++++.. +..+..|...|.+++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~---~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA---VEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---EEEEcCCCCceEEEE
Confidence 9999999765321 112345678899999999999998777888999999999999998653 667778999999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC-EEEEEEcCCCCcEEEEE---ECCCeEEEeeCCCCCcccCC
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE-VFQVGWNPKNETILASC---CLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~ 356 (424)
|+|++. +|++|+.|+.|++||+++ +..+..+.+|.+. +..+.|.+++..++++| +.|+.|++||++....
T Consensus 176 ~spdG~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~---- 249 (493)
T PTZ00421 176 WNLDGS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS---- 249 (493)
T ss_pred EECCCC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC----
Confidence 999987 799999999999999998 6778888888765 45788999886544444 2479999999986532
Q ss_pred CCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCCccC
Q 014433 357 EDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAENIY 409 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~ 409 (424)
.+..... +...+....|++++. +|++++ .|+.|++|++..+.+
T Consensus 250 ---------p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 250 ---------PYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred ---------ceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCce
Confidence 1222222 233455677899999 565555 699999999987653
No 53
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.6e-30 Score=236.20 Aligned_cols=258 Identities=23% Similarity=0.453 Sum_probs=218.9
Q ss_pred CCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceeEEEec
Q 014433 109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWS 187 (424)
Q Consensus 109 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~ 187 (424)
|....+++..+..+. .+.|+++.|+++|. +||+|..+|.|.|||... .+....+.+ |...|-+++|+
T Consensus 202 W~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~----------~k~~~~~~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 202 WSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKE----------QKKTRTLRGSHASRVGSLAWN 269 (484)
T ss_pred EecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhh----------ccccccccCCcCceeEEEecc
Confidence 334556666666655 89999999999997 899999999999999987 455566777 99999999998
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ 267 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~ 267 (424)
. ..+.+|+.||.|..+|++..+... ..+.+|...|..++|++++. .+|+|+.|+.+.|||..... ++.
T Consensus 270 ~---~~lssGsr~~~I~~~dvR~~~~~~-----~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~---p~~ 337 (484)
T KOG0305|consen 270 S---SVLSSGSRDGKILNHDVRISQHVV-----STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPE---PKF 337 (484)
T ss_pred C---ceEEEecCCCcEEEEEEecchhhh-----hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCcc---ccE
Confidence 3 379999999999999998775422 23778999999999999986 66899999999999996644 578
Q ss_pred eeeccCCCeeEEEecCCCCeEEEEEe--CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE-CCCeEEE
Q 014433 268 SVVAHQSEVNCLAFNPFNEWILATGS--TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC-LGRRLMV 344 (424)
Q Consensus 268 ~~~~~~~~v~~v~~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~-~dg~i~i 344 (424)
.+..|.+.|.+++|+|....+||+|+ .|+.|++||..+ +..+..+.. .+.|.+|.|++..+.++.+-+ .++.|.|
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 88899999999999999988999976 589999999997 677777765 689999999998866665544 4678999
Q ss_pred eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
|+..+. ..+..+.+|...|..++++|+|. .+++|+.|.++++|++-..
T Consensus 416 w~~ps~--------------~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 416 WKYPSM--------------KLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred Eecccc--------------ceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCC
Confidence 999874 56778899999999999999999 6999999999999999765
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.5e-30 Score=221.13 Aligned_cols=257 Identities=21% Similarity=0.353 Sum_probs=213.9
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC--ceEEE
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE--GHLLS 196 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s 196 (424)
..-+.|.+-|.++...+ ..|.+|++||.++||+... +....+.+|.++|.+++|.-.++ ..|++
T Consensus 99 l~~~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~G-----------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLKG-----------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred cccccchhhhhhhcccC---ceEEEeecCCeeEEEecCC-----------ceEEEEecCCcceeeeEEEecCCccceEEE
Confidence 34456888888888773 4799999999999999875 66788999999999999865433 25999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC----------------
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP---------------- 260 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~---------------- 260 (424)
++.|.++++|..+.+... .+.+....+|...|.+++..+++. .|++|+.|.+|.||+..+.
T Consensus 165 as~Dqtl~Lw~~~~~~~~--~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENK--VKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred ecCCceEEEEEecCchhh--hhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 999999999999876432 233445569999999999999986 6679999999999993211
Q ss_pred ------CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEE
Q 014433 261 ------SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILA 334 (424)
Q Consensus 261 ------~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~ 334 (424)
....|+..+.+|..+|.+|.|++ .. .+.+++.|.+|+.||+.. +..+.++.+ +...+++..+|... +|+
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~-v~yS~SwDHTIk~WDlet-g~~~~~~~~-~ksl~~i~~~~~~~-Ll~ 316 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT-VIYSVSWDHTIKVWDLET-GGLKSTLTT-NKSLNCISYSPLSK-LLA 316 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CC-ceEeecccceEEEEEeec-ccceeeeec-CcceeEeecccccc-eee
Confidence 12356778899999999999998 33 689999999999999998 566666665 67899999999874 899
Q ss_pred EEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 335 SCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 335 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
+|+.|..|++||.+++.. ....+.+.||.+.|.++.|+|...++|++++.||++++||++...
T Consensus 317 ~gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ecCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999999999999998632 255678899999999999999999999999999999999998753
No 55
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.5e-30 Score=222.48 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=217.5
Q ss_pred CCcEEEEEEeccCCceeEEEecCC------CCcEEEEEeCCCeEEEEeCCCCCCCCCC-----------CCCCCCcEEEe
Q 014433 113 NGKVQIIQQINHDGEVNRARYMPQ------NPFLIATKTVSAEVYVFDYSKHPSKPPL-----------DGACSPDLRLR 175 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~~~~~p~------~~~~latg~~dg~v~iw~~~~~~~~~~~-----------~~~~~~~~~~~ 175 (424)
.+.+-+..-+--+....|++|... ..+++|.|+.+..|.|||+.-.....+. ....+......
T Consensus 161 e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~ 240 (463)
T KOG0270|consen 161 EENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSAS 240 (463)
T ss_pred CcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccc
Confidence 345555555555666677777543 2359999999999999998753222110 00011112234
Q ss_pred cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE
Q 014433 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (424)
Q Consensus 176 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~ 255 (424)
+|+..|.+|+|+..-.+.||+||.|.+|++||+.+++. ...+..|...|.++.|+|..+.++++|+.|++|.+.
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~ 314 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK 314 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc------ceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence 79999999999999888999999999999999998854 455567999999999999999999999999999999
Q ss_pred EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s 335 (424)
|+|........- ...+.|-.++|+|...+.++++..||+|+-+|+|++++++.++++|.++|.+|++++.-+.++++
T Consensus 315 D~R~~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 315 DCRDPSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred eccCccccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 999754322222 24678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
++.|+.|++|++..... ..+..+.-..+...++++.|+-.++++.||..+.++|||+.+..
T Consensus 392 ~s~d~~Vklw~~~~~~~------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccceEEEEeecCCCC------------cccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99999999999976432 22222222233467788999999899999999999999998764
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=6.5e-30 Score=225.72 Aligned_cols=264 Identities=19% Similarity=0.336 Sum_probs=215.3
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC--
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-- 199 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-- 199 (424)
-.|...++-.+|+|.|- ++|+|...|+|||||.... .......++.-.++|..|+|++++.. |++.+.
T Consensus 56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~--------~hiLKnef~v~aG~I~Di~Wd~ds~R-I~avGEGr 125 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQK--------EHILKNEFQVLAGPIKDISWDFDSKR-IAAVGEGR 125 (603)
T ss_pred ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCc--------ceeeeeeeeecccccccceeCCCCcE-EEEEecCc
Confidence 36888999999999985 9999999999999998762 22333456667889999999999985 554443
Q ss_pred --CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433 200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
=|.+.+||..+ .+..+.+|...|+++.|-|..++.+++|++|++|.+|+=.- .+....+..|..-|+
T Consensus 126 erfg~~F~~DSG~--------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP---FKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 126 ERFGHVFLWDSGN--------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP---FKFKSSFREHSKFVN 194 (603)
T ss_pred cceeEEEEecCCC--------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---eeeeeccccccccee
Confidence 24577787643 24567889999999999999999999999999999997433 233455677999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|+.|+|+|+ +||+.+.||.|.+||=.+ ++.+..+. +|++.|.+++|+|++. -+++++.|.+++|||+......+
T Consensus 195 ~VRysPDG~-~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 195 CVRYSPDGS-RFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eEEECCCCC-eEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEE
Confidence 999999998 699999999999999988 78888887 8999999999999996 58899999999999998876543
Q ss_pred CCCCcC-----------------------------CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 355 TPEDAE-----------------------------DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 355 ~~~~~~-----------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
...... ...+..+....||...|+++..+|++. .|++|+.||.|.-|+..
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSG 350 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecC
Confidence 221110 112235677789999999999999998 69999999999999998
Q ss_pred CccCC
Q 014433 406 ENIYH 410 (424)
Q Consensus 406 ~~~~~ 410 (424)
.+.-.
T Consensus 351 ~g~~~ 355 (603)
T KOG0318|consen 351 SGTSD 355 (603)
T ss_pred Ccccc
Confidence 87543
No 57
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=3.5e-29 Score=236.72 Aligned_cols=238 Identities=17% Similarity=0.281 Sum_probs=181.4
Q ss_pred EEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-Cc-ccce
Q 014433 143 TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KS-LEAM 220 (424)
Q Consensus 143 tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~-~~~~ 220 (424)
.|+.++.|++|+... ..+...+.+|.+.|.+++|+|....+|++|+.||+|++||+...... .. ..++
T Consensus 49 gGG~~gvI~L~~~~r----------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMR----------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCCceeEEEeeecCC----------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce
Confidence 356788999999876 34567889999999999999975558999999999999999764321 11 1234
Q ss_pred eeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEE
Q 014433 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300 (424)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~i 300 (424)
..+.+|...|.+++|+|++..++++++.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrI 193 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHI 193 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEE
Confidence 567789999999999999988888999999999999998763 33443 567899999999998 6889999999999
Q ss_pred EECCCCCCcceEecCCCCCEEEE-----EEcCCCCcEEEEEECCC----eEEEeeCCCCCcccCCCCcCCCCCeeeEEEc
Q 014433 301 FDLRKISTALHTFDSHKEEVFQV-----GWNPKNETILASCCLGR----RLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371 (424)
Q Consensus 301 wd~~~~~~~~~~~~~h~~~v~~~-----~~sp~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (424)
||+++ +..+..+.+|.+.+... .|++++. +|++++.|+ .|+|||++.... +.....+.
T Consensus 194 wD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~-----------pl~~~~ld 260 (568)
T PTZ00420 194 IDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTS-----------ALVTMSID 260 (568)
T ss_pred EECCC-CcEEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCC-----------ceEEEEec
Confidence 99998 67788899998765443 3457775 577766664 799999986431 12222333
Q ss_pred CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.+.+.+.-....+++. ++++|+.|+.|++|++..+.+
T Consensus 261 ~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 261 NASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred CCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCcE
Confidence 4444333333344466 788999999999999987643
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.3e-30 Score=241.27 Aligned_cols=249 Identities=20% Similarity=0.348 Sum_probs=210.0
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.-.|.++|..++|+|+.+ ++++|+.|-.|+||++.. .+.+.++.||-.-|..+.|++.-+ .++++|.|
T Consensus 47 FdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~----------rrclftL~GHlDYVRt~~FHheyP-WIlSASDD 114 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT----------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASDD 114 (1202)
T ss_pred hhccCCccceeeecCCCC-eEEecCCccEEEEEeccc----------ceehhhhccccceeEEeeccCCCc-eEEEccCC
Confidence 347999999999999998 899999999999999988 677889999999999999999888 79999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC--C---------------
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV--S--------------- 263 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~--~--------------- 263 (424)
.+|+||+..++ .++..+.+|...|.|.+|+|... ++++++-|.+|+|||+..-+. .
T Consensus 115 QTIrIWNwqsr------~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 115 QTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred CeEEEEeccCC------ceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 99999999877 46788899999999999999875 678999999999999863110 0
Q ss_pred ---------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEE
Q 014433 264 ---------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 264 ---------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l 333 (424)
...+.+.+|...|+.++|+|.-+ +|++|++|+.|++|.+...+ -.+.+..+|.+.|+++-|+|... ++
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lI 265 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LI 265 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-ee
Confidence 01234578999999999999988 89999999999999987522 23566789999999999999885 89
Q ss_pred EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
++.+.|++|+|||+... ..+.+++.....-+.++-+|..+ +++. +.|+-+.||.+..
T Consensus 266 lSnsEDksirVwDm~kR--------------t~v~tfrrendRFW~laahP~lN-LfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDMTKR--------------TSVQTFRRENDRFWILAAHPELN-LFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred EecCCCccEEEEecccc--------------cceeeeeccCCeEEEEEecCCcc-eeee-ecCCceEEEEEcc
Confidence 99999999999999875 34555555566788888899888 5555 5566688888763
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-31 Score=229.19 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=210.0
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.....|.+++|+|..++-+|+.++ -.+.||+..+ ......+......+++++|..+|. +|++|...|.
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~----------~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~ 91 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT----------RSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGH 91 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecch----------hhhhhhHHhhccceeEEEeecCCe-EEEccCCcCc
Confidence 445789999999998877887654 5799999877 455556667788899999999998 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|+|+|+.+. ..++.+.+|+.++..+.|+|.+..+|++|++|+.+++||+.+... ...+.+|+..|.|.+|+
T Consensus 92 V~vfD~k~r------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 92 VKVFDMKSR------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEEeccccH------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccc
Confidence 999996542 346778899999999999999999999999999999999998663 55778999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|.+.++++||++||.|++||+|.....+.++. |..+|-++.+-|.|. ++|+++. ..|+|||+..+.
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAgG-n~vkVWDl~~G~----------- 228 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAGG-NSVKVWDLTTGG----------- 228 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcCC-CeEEEEEecCCc-----------
Confidence 99999999999999999999998656666665 799999999999985 6777664 469999998764
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
+++.....|...|+++++..++. .|+|+|-|+.|++|++.+
T Consensus 229 --qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 229 --QLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred --eehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccc
Confidence 55555566999999999999998 689999999999999654
No 60
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5e-29 Score=234.64 Aligned_cols=256 Identities=18% Similarity=0.303 Sum_probs=189.7
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..+|.+.|++++|+|.+..+||+|+.||+|+|||+....... ....+...+.+|...|.+++|+|.+.++|++|+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 358999999999999444589999999999999997621110 11245678899999999999999876689999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC-eeEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VNCL 279 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~v 279 (424)
++|+|||++++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++.. +..+..|.+. +..+
T Consensus 148 gtVrIWDl~tg~------~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 148 MVVNVWDVERGK------AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRC 217 (493)
T ss_pred CEEEEEECCCCe------EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEE
Confidence 999999998763 3456678999999999999986 667999999999999998664 6667778764 4567
Q ss_pred EecCCCCeEEEEE---eCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEE-CCCeEEEeeCCCCCccc
Q 014433 280 AFNPFNEWILATG---STDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCC-LGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 280 ~~~~~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 354 (424)
.|.+++..++++| +.|+.|++||+++...++.....+. ..+....|++++. +|++++ .|+.|++||+..+.
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~--- 293 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNER--- 293 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCc---
Confidence 8898877555444 2478999999998766766655443 4566678899986 566665 69999999998753
Q ss_pred CCCCcCCCCCeeeEEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 355 TPEDAEDGPPELLFIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
+++.. ..+..++..++|.|.-. + =...--..+++++...
T Consensus 294 -----------~~~~~~~~s~~~~~g~~~~pk~~-~--dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 294 -----------LTFCSSYSSVEPHKGLCMMPKWS-L--DTRKCEIARFYALTYH 333 (493)
T ss_pred -----------eEEEeeccCCCCCcceEeccccc-c--cccceeeeEEEEecCC
Confidence 22222 23455678888888532 1 1122234456665544
No 61
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=231.51 Aligned_cols=239 Identities=22% Similarity=0.337 Sum_probs=202.0
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
..-+|.+.+|-+.. +.+++|+.|..|+||++.+ ...+..+.+|..-|.+++.+|..+ +++++|.|-+|
T Consensus 54 ~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt----------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~i 121 (794)
T KOG0276|consen 54 SEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT----------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTI 121 (794)
T ss_pred cccchhhheeeecc-ceEEEecCCceEEEEeccc----------ceeeEEeeccccceeeeeecCCCC-eEEecCCccEE
Confidence 34588888888844 5899999999999999998 677889999999999999999998 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~ 283 (424)
++||-+. .+.+.+.+.+|...|.+++|+|.+.+.||+++-|++|+||.+.++. +..++.+|...|+|+.+-+
T Consensus 122 KlW~we~-----~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 122 KLWDWEN-----EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYYT 193 (794)
T ss_pred EEeeccC-----ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEecc
Confidence 9999874 3457788999999999999999999999999999999999998855 5788899999999999987
Q ss_pred CC-CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 284 FN-EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 284 ~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
-| +.+|++|++|.+|+|||..+ +.+++++.+|...|..+.|+|.-+ ++++|+.||+++||+..+.+.+...
T Consensus 194 ~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tL------ 265 (794)
T KOG0276|consen 194 GGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTL------ 265 (794)
T ss_pred CCCcceEEecCCCceEEEeecch-HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhh------
Confidence 54 23699999999999999998 899999999999999999999986 8999999999999998876543322
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcE
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL 399 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i 399 (424)
.-...+|++++-.+.+. .++.|.+.|.|
T Consensus 266 --------n~gleRvW~I~~~k~~~-~i~vG~Deg~i 293 (794)
T KOG0276|consen 266 --------NYGLERVWCIAAHKGDG-KIAVGFDEGSV 293 (794)
T ss_pred --------hcCCceEEEEeecCCCC-eEEEeccCCcE
Confidence 12233566666666555 45555544443
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=214.77 Aligned_cols=281 Identities=18% Similarity=0.284 Sum_probs=215.0
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCC-----CC--CCCCCC-CCcEEEecCCCceeEE
Q 014433 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS-----KP--PLDGAC-SPDLRLRGHSTEGYGL 184 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~-----~~--~~~~~~-~~~~~~~~h~~~v~~l 184 (424)
..+.+....-.|.+++.+.+|+|+|. ++|||+.|..|+|+|+..... +. ...... -.+.++..|..+|+++
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 34555556668999999999999997 999999999999999974211 11 011112 3356788999999999
Q ss_pred EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (424)
Q Consensus 185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~ 264 (424)
.|+|... +|++|+.|++|+++|+......+.++ .++ ...+|.++.|+|.|.+++ +|..-.++++||+.+-++..
T Consensus 179 ~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K---~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 179 DFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFK---VFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred eecchhh-eEEeccCCCeEEEEecccHHHHHHHH---Hhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEee
Confidence 9999776 89999999999999997654322222 222 346899999999998665 88889999999999866533
Q ss_pred CeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCC-CCEEEEEEcCCCCcEEEEEECCCeE
Q 014433 265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHK-EEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~-~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
+-..-..|.+.|+++.+++.++ +.++|+.||.|++||--+ .+++.++. +|. ..|.+..|..+++ ++++.+.|..+
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~v 329 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTV 329 (430)
T ss_pred ecCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCccee
Confidence 2233356899999999999998 899999999999999877 67777765 454 5799999999996 68899999999
Q ss_pred EEeeCCCCCcccCCCCcC------------------------CCC-----------CeeeEEEcCCCCCcceEEeCCCCC
Q 014433 343 MVWDLSRIDEEQTPEDAE------------------------DGP-----------PELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~------------------------~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
++|.+.+++..+...... ... .+.-...-||++.+..+.-+|.++
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 999999876543222210 000 001111237999999999999999
Q ss_pred cEEEEEeCCCcEEEEec
Q 014433 388 WVISSVAEDNILQIWQM 404 (424)
Q Consensus 388 ~~l~s~~~dg~i~vw~~ 404 (424)
.+++++.|-.+++|--
T Consensus 410 -~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 -AFMTCSDDFRARFWYR 425 (430)
T ss_pred -ceeeecccceeeeeee
Confidence 6999999999999964
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.5e-31 Score=224.53 Aligned_cols=254 Identities=16% Similarity=0.310 Sum_probs=207.2
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..-+|.+.|.|++=+|.....+|+|+.||.|+|||+.. .....++.+|.+.|.+|++.. . .+++++.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----------R~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgd 127 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----------RECIRTFKAHEGLVRGICVTQ--T-SFFTVGD 127 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhh----------hhhhheeecccCceeeEEecc--c-ceEEecC
Confidence 34689999999999997766899999999999999987 566788999999999999976 3 5999999
Q ss_pred CCcEEEEeCCCCCC------------------------C--------CcccceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433 200 DAQICLWDINAAPK------------------------N--------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (424)
Q Consensus 200 dg~i~iwd~~~~~~------------------------~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 247 (424)
|.+|+.|.+..... . ....++..+.-....|.++.|+|....+|++|+
T Consensus 128 DKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 128 DKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred CcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 99999998543210 0 000234444444567889999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433 248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 248 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp 327 (424)
.|+.|.+||+|+....+.+. ....-+.|+|+| ..+.|++|+.|..++.||+|....++..+.+|.++|.++.|||
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred cCCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 99999999999977543332 245678899999 5557999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
.|+ -+++||.|.+|+||..+.+... ... +.-....|.++.|+.|.+ .++|||+|+.|++|.-..
T Consensus 283 tG~-EfvsgsyDksIRIf~~~~~~SR-----------diY--htkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 283 TGQ-EFVSGSYDKSIRIFPVNHGHSR-----------DIY--HTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred Ccc-hhccccccceEEEeecCCCcch-----------hhh--hHhhhheeeEEEEecccc-EEEecCCCcceeeeecch
Confidence 997 5899999999999999875421 111 111234699999999999 599999999999999754
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.4e-30 Score=227.89 Aligned_cols=269 Identities=17% Similarity=0.233 Sum_probs=203.7
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC---------------------------------
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL--------------------------------- 164 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~--------------------------------- 164 (424)
.++.-.|...|.++++.|.|. .|++|+.|.+|++||+.........
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred eEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 344556888999999999997 7999999999999998763221100
Q ss_pred ----------------CCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc
Q 014433 165 ----------------DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG 228 (424)
Q Consensus 165 ----------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 228 (424)
.....-....+||...+++.+|+|.....|++++.||++++||++..+....+-......+..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 0000011234678899999999999988999999999999999987654322211112223455
Q ss_pred cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC--CeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGSTDKTVKLFDLRKI 306 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~ 306 (424)
+++.++|+++++ +||+|+.||.|.+|+.+..........-.+|.. .|+||+|+++|+ +|++-+.|+++++||+|+.
T Consensus 319 ~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 319 PVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred CceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccc
Confidence 789999999997 588999999999999977654444455567877 999999999998 5889999999999999999
Q ss_pred CCcceEecCCC--CCEEEEEEcCCCCcEEEEEEC------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433 307 STALHTFDSHK--EEVFQVGWNPKNETILASCCL------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 307 ~~~~~~~~~h~--~~v~~~~~sp~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
.+++....+-. -+-+.++|||+.+ ++++|.. .|.+.+||..+. ..++.+.-....|.
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~--------------d~v~ki~i~~aSvv 461 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL--------------DTVYKIDISTASVV 461 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccce--------------eeEEEecCCCceEE
Confidence 99988876543 3568899999986 7888764 467999998875 34444444466789
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEE-ecC
Q 014433 379 DFSWNPCEDWVISSVAEDNILQIW-QMA 405 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~dg~i~vw-~~~ 405 (424)
.+.|+|.-+. |..|+.||.++|+ |..
T Consensus 462 ~~~WhpkLNQ-i~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 462 RCLWHPKLNQ-IFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EEeecchhhh-eeeecCCCceEEEECcc
Confidence 9999999885 5556668888875 443
No 65
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=207.37 Aligned_cols=321 Identities=19% Similarity=0.332 Sum_probs=240.7
Q ss_pred hhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCC
Q 014433 35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG 114 (424)
Q Consensus 35 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (424)
++.+.-+||.+..+|.-..... .++.+|++... ..|.+.|.++... .+
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~-------~rla~gS~~Ee-~~Nkvqiv~ld~~------------------------s~ 85 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKK-------FRLAVGSFIEE-YNNKVQIVQLDED------------------------SG 85 (364)
T ss_pred EEEecCCCceeeeccccCCCcc-------eeEEEeeeccc-cCCeeEEEEEccC------------------------CC
Confidence 4567789999999998764333 89999997654 6688888887411 12
Q ss_pred cEEEEEEeccCCceeEEEecCCC----CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433 115 KVQIIQQINHDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~~~~~p~~----~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
.+.....+.|+-+++.+.|.|+. +.+|||.+ ..+|+|.+............. ....-..+..++++..|+...
T Consensus 86 e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L-~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 86 ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVL-NNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred ceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhh-ccCcccccCCcccccccccCC
Confidence 23333347899999999999965 45788754 479999998532222110000 011123467799999999999
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
++++.++|-|-+..|||++++.. ......+-.|...|.+|+|...+..+||+++.||.+++||+|.......+..-.
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVS---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred cceeEeecccCeEEEEEEeeccc---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence 98999999999999999998622 122345667999999999999999999999999999999999877644444434
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCC-cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 271 AHQSEVNCLAFNPFNEWILATGSTDK-TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 271 ~~~~~v~~v~~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
....+...++|+++..+++|+-..|+ .|.|.|+|.+..++..+..|++.|+.++|.|.....+++++.|..+.|||+..
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 44678899999999998899877664 79999999999999999999999999999999999999999999999999987
Q ss_pred CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
...... ..+.+.+. -.+.|+.+.|++..+.-|+.+. ++.+.+-+
T Consensus 320 ~~~~~~------~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiLR 363 (364)
T KOG0290|consen 320 MPRENG------EDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEILR 363 (364)
T ss_pred ccccCC------CCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEEe
Confidence 643111 11223333 2456999999987654566544 55666543
No 66
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.1e-31 Score=241.61 Aligned_cols=251 Identities=25% Similarity=0.424 Sum_probs=210.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
-.+..++|.....++|||++..|.|.+||+... ...+.+..+..|...+.+++|++..+++|++|+.||+|++
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKS-------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC 160 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcc-------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence 356678898767789999999999999999872 1223345678899999999999999999999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN 285 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 285 (424)
||++..+. ...+.+....|.+++|+|...+.|+++.+.|.+++||+|.+.. ....+.+|.++|.|+.|+|++
T Consensus 161 ~DlR~~~S------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 161 WDLRSKKS------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred Eeeecccc------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--HHHHhhcccCceEEEeecCCC
Confidence 99987743 3345557889999999999999999999999999999998764 566778999999999999976
Q ss_pred CeEEEEEeCCCcEEEEECCCC-CCcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCeEEEeeCCCCCcccCCCCcCCC
Q 014433 286 EWILATGSTDKTVKLFDLRKI-STALHTFDSHKEEVFQVGWNPKNETILASCCL--GRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 286 ~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
. +||||+.|+.|+|||.... ..++.++.. ..+|.+++|-|..++.||+++. |-.|+|||++.
T Consensus 233 ~-~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR------------- 297 (839)
T KOG0269|consen 233 E-WLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR------------- 297 (839)
T ss_pred c-eeeecCCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeecc-------------
Confidence 6 7999999999999999852 234555543 5799999999999888998876 77899999987
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
|.....++..|...++.++|....+-++.+++.||+|..-.++.
T Consensus 298 PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 298 PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 33556778889999999999876666889999999887655543
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.3e-28 Score=192.11 Aligned_cols=275 Identities=20% Similarity=0.353 Sum_probs=205.4
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC-----CCCCCCCcEEEecCCCceeEEEe
Q 014433 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-----LDGACSPDLRLRGHSTEGYGLSW 186 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~ 186 (424)
..+.|+.+..+.-...|.+++|+|.|. +.|+|+...+.+|........... ..........-+.|.+.|+|.+|
T Consensus 19 ~k~~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 19 EKKHFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred cccceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe
Confidence 356788888899999999999999986 899999999999987654211110 00001112334568999999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCCCCCCCcc----------------------------------------------cce
Q 014433 187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSL----------------------------------------------EAM 220 (424)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------------------~~~ 220 (424)
+|.|. +|++|++|.+|++..++.......- +..
T Consensus 98 s~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 99998 8999999999999877654321110 122
Q ss_pred eeeecCCccEeeEE-EecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-ec---cCCCeeEEEecCCCCeEEEEEeCC
Q 014433 221 QIFKVHEGVVEDVA-WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VA---HQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 221 ~~~~~~~~~v~~~~-~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~~~v~~v~~~~~~~~~l~tg~~d 295 (424)
..+.+|.+.|.++- |+ ..+|++|+.|.+|++||+|-+.+...+..- .. ..+.|.+++..|.|+ +|++|..|
T Consensus 177 ~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~d 252 (350)
T KOG0641|consen 177 HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHAD 252 (350)
T ss_pred eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCC
Confidence 23334444444431 22 247889999999999999987652222111 11 235799999999998 89999999
Q ss_pred CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC
Q 014433 296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 375 (424)
.+..+||+|. +++++.+..|...|.++.|+|.. .++++|+.|..|++-|+...-.. ...+.+...|..
T Consensus 253 ssc~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~----------el~~~vv~ehkd 320 (350)
T KOG0641|consen 253 SSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAH----------ELPIMVVAEHKD 320 (350)
T ss_pred CceEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhh----------cCceEEEEeccC
Confidence 9999999998 89999999999999999999987 58999999999999998653211 123455567888
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 376 KISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
.+..+.|+|+.- -+++.+.|.++.+|-+.
T Consensus 321 k~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 899999999987 57888999999999874
No 68
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.8e-30 Score=204.11 Aligned_cols=260 Identities=22% Similarity=0.367 Sum_probs=206.1
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC--CCCceEEEEeCC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK--FKEGHLLSGSDD 200 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~d 200 (424)
.|.+.|..+...--|. .|||+++|++|+||.+... ....++..|.+|.++|+.++|.. .|. +||+++.|
T Consensus 9 ~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n-------~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYD 79 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNN-------GQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYD 79 (299)
T ss_pred hhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCC-------CCceeeeEecCCCCCeeEEeecccccCc-EeeEeecC
Confidence 5788888877776676 7999999999999999872 33467889999999999999964 454 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|.|.||.-..+. .........|...|++++|.|.+ ..+|++++.||.|.|.+.+............+|.-.|+++
T Consensus 80 gkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 80 GKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ceEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 999999987652 23445567899999999999964 3567899999999999998763333344556899999999
Q ss_pred EecCC---C----------CeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCC---CcEEEEEECCCeE
Q 014433 280 AFNPF---N----------EWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKN---ETILASCCLGRRL 342 (424)
Q Consensus 280 ~~~~~---~----------~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~---~~~l~s~~~dg~i 342 (424)
+|.|- | .+-|++|+.|..|+||+..+.. ..-.++.+|...|..++|.|.- ...+|+|+.||++
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 99986 3 1249999999999999998732 2334588999999999999964 4579999999999
Q ss_pred EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.||..+...++ ....++. .....++.+.|++.|. +|+.++.|+.|.+|.-+..
T Consensus 236 iIwt~~~e~e~--------wk~tll~---~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 236 IIWTKDEEYEP--------WKKTLLE---EFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEEecCccCc--------ccccccc---cCCcceEEEEEecccc-EEEEecCCcEEEEEEeCCC
Confidence 99988743221 1123333 2456799999999999 7888888999999987654
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=228.93 Aligned_cols=261 Identities=23% Similarity=0.354 Sum_probs=219.0
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
.++++++.-. .+.+..|.|.+ .++++|..+|.+.|||+.. ...+.+.++|.+.+++++.+|++. .++
T Consensus 404 ~kciRTi~~~-y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS----------~~l~Eti~AHdgaIWsi~~~pD~~-g~v 470 (888)
T KOG0306|consen 404 LKCIRTITCG-YILASKFVPGD-RYIVLGTKNGELQVFDLAS----------ASLVETIRAHDGAIWSISLSPDNK-GFV 470 (888)
T ss_pred cceeEEeccc-cEEEEEecCCC-ceEEEeccCCceEEEEeeh----------hhhhhhhhccccceeeeeecCCCC-ceE
Confidence 4455555444 88899999966 4899999999999999987 445566779999999999999998 599
Q ss_pred EEeCCCcEEEEeCCCCCCC-----C--cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433 196 SGSDDAQICLWDINAAPKN-----K--SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~-----~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~ 268 (424)
+||.|.+|++||..--... + .+...+.+. -...|.|++++|+++ ++|++--|.+++||-+.+-+ ....
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK---Ffls 545 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK---FFLS 545 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee---eeee
Confidence 9999999999997532210 1 111112222 457899999999997 56788899999999999854 4777
Q ss_pred eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
+.+|.-||.||..+|++. +++||+.|..|++|-+.- +.+-+.+.+|...|.++.|.|.. +++.+|+.|+.|+-||-.
T Consensus 546 LYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred ecccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechh
Confidence 889999999999999988 899999999999999986 88999999999999999999976 589999999999999987
Q ss_pred CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 412 (424)
.. ..+..+.+|...|++++.+|+|. +++|+|.|.+|++|......+--+
T Consensus 623 kF--------------e~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 623 KF--------------EEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred hh--------------hhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccCcceeee
Confidence 75 66778899999999999999999 699999999999999988755433
No 70
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.97 E-value=8.3e-29 Score=203.40 Aligned_cols=313 Identities=20% Similarity=0.267 Sum_probs=232.7
Q ss_pred eEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEE
Q 014433 63 VQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIA 142 (424)
Q Consensus 63 ~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~la 142 (424)
.-+|++||..-. .+|.+.+.+++-. .+.+.....+.|.+.|..|+-+|.++.+|+
T Consensus 26 ~icFlvgTnslK-~dNqVhll~~d~e------------------------~s~l~skvf~h~agEvw~las~P~d~~ila 80 (370)
T KOG1007|consen 26 HICFLVGTNSLK-EDNQVHLLRLDSE------------------------GSELLSKVFFHHAGEVWDLASSPFDQRILA 80 (370)
T ss_pred ceEEEEeccccC-CcceeEEEEecCc------------------------cchhhhhhhhcCCcceehhhcCCCCCceEE
Confidence 468999997765 4588888877311 112222334567899999999999988999
Q ss_pred EEeCC-------CeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014433 143 TKTVS-------AEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN 214 (424)
Q Consensus 143 tg~~d-------g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 214 (424)
|+..+ ..+.||.+........ ......+..+. .+-+.|.|+.|.|++. .+++-. |..|.+|++......
T Consensus 81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~-~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~ 157 (370)
T KOG1007|consen 81 TVYNDTSDSGVLTGAAIWQIPEPLGQSN-SSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKI 157 (370)
T ss_pred EEEeccCCCcceeeEEEEecccccCccc-cchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcch
Confidence 87653 3577999987433211 11122233343 3556899999999877 466554 889999999877652
Q ss_pred -CcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEE
Q 014433 215 -KSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292 (424)
Q Consensus 215 -~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg 292 (424)
..+. ......+....++-+|+|. +.+.+ ....|+++..||+|+......+ -.+|...|..+.|+|+.+++|+++
T Consensus 158 vaev~-ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~~lvt~ 233 (370)
T KOG1007|consen 158 VAEVL-SSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQHILVTC 233 (370)
T ss_pred heeec-ccccccccceecccccCCCCccceE-EEeCCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceEEEEEc
Confidence 2221 1112236678889999993 33455 4457899999999987653333 357889999999999999999999
Q ss_pred eCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc-------------
Q 014433 293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA------------- 359 (424)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------- 359 (424)
+.||.|+|||.|+...|++.+.+|...|.++.|+|...+++++++.|..|.+|.......++.....
T Consensus 234 gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 234 GDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE 313 (370)
T ss_pred CCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence 9999999999999999999999999999999999998899999999999999988765432211110
Q ss_pred --CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 360 --EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 360 --~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...+...+.++..|...|++++|+.-.++++++-+.||.+.|=++...
T Consensus 314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 012234566788899999999999999999999999999998776543
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.2e-29 Score=218.35 Aligned_cols=242 Identities=19% Similarity=0.241 Sum_probs=205.6
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.....|.++.|..||. ++|+|...|.|+|||..+ ...+..+.+|..++..+.|+|.+..+|++|+.|+.
T Consensus 66 rFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~----------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v 134 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKS----------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV 134 (487)
T ss_pred hhccceeEEEeecCCe-EEEccCCcCcEEEecccc----------HHHHHHHhhccCceeEEEecccCCeEEEecCCCce
Confidence 3567899999999997 999999999999999654 34567788999999999999999989999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
+++||+.+.. ....+.+|++.|.+.+|+|..++++++|+.||.|++||+|.... .+.. ..|..+|.++.+-
T Consensus 135 ~k~~d~s~a~------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~e-lnhg~pVe~vl~l 205 (487)
T KOG0310|consen 135 VKYWDLSTAY------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVE-LNHGCPVESVLAL 205 (487)
T ss_pred EEEEEcCCcE------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEE-ecCCCceeeEEEc
Confidence 9999998763 24467899999999999999999999999999999999998642 2333 3689999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|.|. ++|+++ ...|++||+.+.++.+..+..|...|+|+++..++. .|++++-|+.|++||+.+.
T Consensus 206 psgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~------------ 270 (487)
T KOG0310|consen 206 PSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNY------------ 270 (487)
T ss_pred CCCC-EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccce------------
Confidence 9887 687776 458999999987788877777999999999999884 7899999999999997663
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
+++..+. ..++|.+++.+|++. .++.|..+|.+.+=+
T Consensus 271 --Kvv~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 271 --KVVHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRR 307 (487)
T ss_pred --EEEEeee-cccceeeEEecCCCc-eEEEecccceeeeeh
Confidence 4444443 467899999999988 688888899877663
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.1e-29 Score=202.90 Aligned_cols=259 Identities=18% Similarity=0.325 Sum_probs=209.5
Q ss_pred eccCCceeEEEecC--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 122 INHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~~~~~p--~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
-+|..+|-.++|+| ....+|++++.||.-.+-+-++ ..-+.++.+|.+.|++...+.+.. ..++++.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t----------gdwigtfeghkgavw~~~l~~na~-~aasaaa 79 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT----------GDWIGTFEGHKGAVWSATLNKNAT-RAASAAA 79 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC----------CCcEEeeeccCcceeeeecCchhh-hhhhhcc
Confidence 37999999999997 2346899999999888777666 445788999999999999988766 6889999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|-+-++||.-++....++ . |..-|..++|+.+..+++ +|+.+..++|||++.++. +...+.+|.+.|..+
T Consensus 80 dftakvw~a~tgdelhsf------~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSF------E-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTV 149 (334)
T ss_pred cchhhhhhhhhhhhhhhh------h-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCC--CchhhcCCCCcceeE
Confidence 999999999887543333 2 788999999999988765 999999999999998774 667788999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
.|..... .|++.+.|++|++||.|+ +..++++.. +.+|+++..+++|+ +++....+.|.+||..+....+....+
T Consensus 150 ~wc~eD~-~iLSSadd~tVRLWD~rT-gt~v~sL~~-~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 150 LWCHEDK-CILSSADDKTVRLWDHRT-GTEVQSLEF-NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred EEeccCc-eEEeeccCCceEEEEecc-CcEEEEEec-CCCCcceeeccCCC--EEEEecCceeEEeccccccceeeccCc
Confidence 9998766 577889999999999999 677888775 67899999999996 456667778999998876654433221
Q ss_pred C------CCCC---------------------eeeEE-EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 360 E------DGPP---------------------ELLFI-HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 360 ~------~~~~---------------------~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
. -.|. +-+.. ..+|.++|.++.|+|+|. +.++|++||+|++|....+
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 1 0010 11222 368999999999999999 8999999999999998765
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.1e-29 Score=207.84 Aligned_cols=259 Identities=19% Similarity=0.270 Sum_probs=213.0
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
+++....+.|.+|+|++. ++++|+.||.|.||+..+...... ........+--+..+|.|++|+.+.. +|++|+.|
T Consensus 209 KFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKD--LkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqD 284 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKD--LKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQD 284 (508)
T ss_pred ecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhh--hhhhhhcceeecccceEEEeecccHH-HhhccCcC
Confidence 456778899999999997 899999999999999987211110 11222334445788999999999877 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|.|++|.++++.+. +.+. .|...|+++.|+.++.+++ +++.|.++++.-+++++. +..+.+|.+.|+..
T Consensus 285 GkIKvWri~tG~Cl------RrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 285 GKIKVWRIETGQCL------RRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEA 354 (508)
T ss_pred CcEEEEEEecchHH------HHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchh---HHHhcCccccccce
Confidence 99999999998653 4443 7999999999999998776 999999999999999886 77888999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
.|.++|.+ +++++.||+|++|+..+ ..++.+++. ...+|+++..-|..+..++.|...++|.|-++..
T Consensus 355 ~ft~dG~~-iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-------- 424 (508)
T KOG0275|consen 355 TFTDDGHH-IISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-------- 424 (508)
T ss_pred EEcCCCCe-EEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--------
Confidence 99999985 88999999999999998 788888874 3458999999998877899999999999999865
Q ss_pred CcCCCCCeeeEEEcCC---CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433 358 DAEDGPPELLFIHGGH---TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
+.+..+... .+...+...+|.|. .+.+.++|+.++.|.+.++.++.
T Consensus 425 -------QvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 425 -------QVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred -------eEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCceee
Confidence 445544322 23456678999999 48889999999999999997764
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3e-28 Score=232.80 Aligned_cols=271 Identities=22% Similarity=0.344 Sum_probs=211.3
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC--------CCCCCCCCCCCcEEEecCCCceeEEEec
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP--------SKPPLDGACSPDLRLRGHSTEGYGLSWS 187 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 187 (424)
..+.....|.+.|+|++|+|+|. +||+|++|+.|.||...... ........++....+.+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 34455678999999999999997 89999999999999988410 1112234567788899999999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ 267 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~ 267 (424)
|++. +|++++.|++|.|||..+. ..+..+.+|.+.|-.+.|.|-|+ .||+-+.|++|+||++..-...+.+.
T Consensus 139 p~~~-~lvS~s~DnsViiwn~~tF------~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 139 PDDS-LLVSVSLDNSVIIWNAKTF------ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred CCcc-EEEEecccceEEEEccccc------eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeec
Confidence 9887 8999999999999999765 46778899999999999999997 56899999999999976633211121
Q ss_pred eee---ccCCCeeEEEecCCCCeEEEEEe-CC---CcEEEEECCCCCCcceEecCCCCCEEEEEEcCC--------C---
Q 014433 268 SVV---AHQSEVNCLAFNPFNEWILATGS-TD---KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK--------N--- 329 (424)
Q Consensus 268 ~~~---~~~~~v~~v~~~~~~~~~l~tg~-~d---g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~--------~--- 329 (424)
... .-...+..+.|+|+|.+ |++.. .. .++.|.+-.+ .+.-..+-+|..++.+++|+|. |
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~-las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHH-LASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred cchhhCCCcceeeecccCCCcCe-ecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 111 12346788999999995 66643 22 3688887655 5667788899999999999982 1
Q ss_pred -C----cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 330 -E----TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 330 -~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
. .++|+|+.|++|.||.....+ .++..+.-....|.+++|+|||. .|..+|.||+|.+..+
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~R-------------Pl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPR-------------PLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHF 354 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCC-------------chhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEc
Confidence 1 178999999999999986532 22222333456799999999999 5777799999999999
Q ss_pred CCccCCC
Q 014433 405 AENIYHD 411 (424)
Q Consensus 405 ~~~~~~~ 411 (424)
+...+-.
T Consensus 355 ee~ElG~ 361 (942)
T KOG0973|consen 355 EEKELGV 361 (942)
T ss_pred chHHhCc
Confidence 9886643
No 75
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.9e-27 Score=222.16 Aligned_cols=240 Identities=15% Similarity=0.220 Sum_probs=175.1
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
....+|.+.|.+++|+|+...+||+|+.||+|+||++........ ....+...+.+|...|.+++|+|++..+|++++
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 344589999999999997556999999999999999975211100 011345568899999999999999886678999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|++|++||++++.. ...+. |...|.+++|+|++. +|++++.|+.|+|||++++.. +..+.+|.+.+.+
T Consensus 146 ~DgtIrIWDl~tg~~------~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s 214 (568)
T PTZ00420 146 FDSFVNIWDIENEKR------AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNT 214 (568)
T ss_pred CCCeEEEEECCCCcE------EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE---EEEEecccCCcee
Confidence 999999999987642 22233 567899999999987 667888999999999998764 6677788876543
Q ss_pred E-----EecCCCCeEEEEEeCC----CcEEEEECCCCCCcceEecCCC--CCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433 279 L-----AFNPFNEWILATGSTD----KTVKLFDLRKISTALHTFDSHK--EEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 279 v-----~~~~~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
. .|++++.+ |++++.| +.|+|||+++...++..+..+. +.+.. .|.++...++++|+.|+.|++|++
T Consensus 215 ~~v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 215 KNIWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEc
Confidence 3 34577775 6665555 3799999998677777665332 23333 344443358899999999999999
Q ss_pred CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014433 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
..... ..+..+ .+..++.+++|.|..
T Consensus 293 ~~~~~------------~~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 293 SLGSI------------RKVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred cCCcE------------Eeeccc-ccCCCccceEEcccc
Confidence 76421 112222 245677889999864
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=225.32 Aligned_cols=252 Identities=23% Similarity=0.362 Sum_probs=212.3
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
..+........+|.+.|.++++.. +..++++|+.|.+++|||+.+ ......+.+|...|.++...+
T Consensus 236 ~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s----------g~C~~~l~gh~stv~~~~~~~--- 301 (537)
T KOG0274|consen 236 NNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST----------GECTHSLQGHTSSVRCLTIDP--- 301 (537)
T ss_pred ccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC----------CcEEEEecCCCceEEEEEccC---
Confidence 344455555789999999999987 556999999999999999887 677888999999999998754
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.++++|+.|.+|++|++.++ ..+..+.+|.++|+++..+ +. ++++|+.||+|++||+++.+. +..+.+
T Consensus 302 ~~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~c---l~sl~g 369 (537)
T KOG0274|consen 302 FLLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKC---LKSLSG 369 (537)
T ss_pred ceEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhcee---eeeecC
Confidence 36888999999999999876 3466677799999999988 33 667999999999999998664 888889
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|...|.++.+.+. . .+++|+.|++|++||+++..+++.++.+|..-|..+.+.. .+|++++.|+.|++||...+
T Consensus 370 H~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~- 443 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEG- 443 (537)
T ss_pred CcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc---ceeEeccccccEEEeecccC-
Confidence 9999999988865 4 6899999999999999984389999999999997777754 47999999999999999886
Q ss_pred cccCCCCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433 352 EEQTPEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
+++..+.+ |...|..+++. .. .+++++.||.+++||+..+.+..
T Consensus 444 -------------~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 444 -------------ECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred -------------ceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCchhh
Confidence 55666666 66778888886 33 68888999999999999986644
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.9e-28 Score=195.02 Aligned_cols=251 Identities=17% Similarity=0.290 Sum_probs=205.9
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
....+|...|.+++|+-+|. .+|+|+.|+++.+|++... .........+|.+.|-.++|+|..+.+|++++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~--------r~~~~~~~~gh~~svdql~w~~~~~d~~atas 84 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERD--------RFRKELVYRGHTDSVDQLCWDPKHPDLFATAS 84 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecch--------hhhhhhcccCCCcchhhheeCCCCCcceEEec
Confidence 34457899999999999997 7999999999999999872 23334567789999999999999888999999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|.+|++||++.++. ...... ...-.-+.|+|++.++ ++++.|..|.+.|.++.+. ... ......++-
T Consensus 85 ~dk~ir~wd~r~~k~------~~~i~~-~~eni~i~wsp~g~~~-~~~~kdD~it~id~r~~~~---~~~-~~~~~e~ne 152 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKC------TARIET-KGENINITWSPDGEYI-AVGNKDDRITFIDARTYKI---VNE-EQFKFEVNE 152 (313)
T ss_pred CCceEEEEEeccCcE------EEEeec-cCcceEEEEcCCCCEE-EEecCcccEEEEEecccce---eeh-hcccceeee
Confidence 999999999998754 333332 3334467899999865 5889999999999998653 222 233556788
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
++|+-.+. +|+.....|.|.|..... -+++..+++|.....||.|+|+|+ +||+|+.|..+.+||+...
T Consensus 153 ~~w~~~nd-~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~EL-------- 221 (313)
T KOG1407|consen 153 ISWNNSND-LFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDEL-------- 221 (313)
T ss_pred eeecCCCC-EEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHh--------
Confidence 99997666 455555579999999987 689999999999999999999996 7999999999999999864
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
.+++.+..+.-+|..+.|+.+|+ +||++++|-.|-|=.+.+|.
T Consensus 222 ------iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 222 ------ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ------hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC
Confidence 55677778888999999999999 79999999999877776663
No 78
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.9e-27 Score=193.83 Aligned_cols=276 Identities=17% Similarity=0.315 Sum_probs=208.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC-CCceEEEEeCCC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg 201 (424)
+|.+-|+++.|.+.|+ .+|+|+.|++|+|||.... .+.+......+.|.+.|..+.|.+. -.+.+|+++.|+
T Consensus 11 ~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSD------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred CCcceeeeeeecccCc-eeeeccCCCcEEEEeccCC------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 6889999999999997 7999999999999997652 2456677788999999999999653 233799999999
Q ss_pred cEEEEeCCCCC---CCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCC---Ceee------
Q 014433 202 QICLWDINAAP---KNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSK---PVQS------ 268 (424)
Q Consensus 202 ~i~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~---~~~~------ 268 (424)
++.||.-.... ..........+....+.|++++|.|.. ...+|+++.||.++||+.-...... ....
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999753221 112333445566677899999999964 3457899999999999876543211 1111
Q ss_pred -eeccCCCeeEEEecCCC--CeEEEEEeCC-----CcEEEEECCCCC---CcceEecCCCCCEEEEEEcCCCC---cEEE
Q 014433 269 -VVAHQSEVNCLAFNPFN--EWILATGSTD-----KTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNPKNE---TILA 334 (424)
Q Consensus 269 -~~~~~~~v~~v~~~~~~--~~~l~tg~~d-----g~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~sp~~~---~~l~ 334 (424)
...+..+..|+.|+|.. +.+||.|+.+ +.++||.....+ ..+.++.+|..+|+.++|.|+-. .+||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 12466788999999742 3378888866 478999876543 34566779999999999999642 4799
Q ss_pred EEECCCeEEEeeCCCCCcc------cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 335 SCCLGRRLMVWDLSRIDEE------QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 335 s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
+++.|| |+||.+...... .......+.+.+.+..+.+|++.|+.+.|+-.|. +|+|+|.||+|++|+..-.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhhhh
Confidence 999999 999999853321 1112222344567788899999999999999999 8999999999999987643
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-26 Score=191.47 Aligned_cols=244 Identities=16% Similarity=0.260 Sum_probs=194.0
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC--CC
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--DA 201 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg 201 (424)
..+.|+++.|+++|. ++++++.|..++|||... .+...++..+.-.+..++|..... .++.++. |.
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~----------g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLS----------GKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCC----------CceeeEeecccccccEEEEecCCc-eEEEccCCCCC
Confidence 367899999999997 677788899999999987 566777777777888888876655 4555555 88
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
+|+..++.+. +.++.+.+|...|++|+.+|-+. .|++++.|++|++||+|..++ ...+ +...-..++|
T Consensus 81 tIryLsl~dN------kylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~c---qg~l--~~~~~pi~Af 148 (311)
T KOG1446|consen 81 TIRYLSLHDN------KYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKC---QGLL--NLSGRPIAAF 148 (311)
T ss_pred ceEEEEeecC------ceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCC---ceEE--ecCCCcceeE
Confidence 9999999877 45788999999999999999986 566999999999999998665 2222 2334456799
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCC-CCcceEecCC---CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSH---KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h---~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
+|.|- ++|++.....|++||+|+. +.|..++... ....+.+.|||+|+. ++.+...+.+++.|.-.+.
T Consensus 149 Dp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~------ 220 (311)
T KOG1446|consen 149 DPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT------ 220 (311)
T ss_pred CCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc------
Confidence 99997 7888887779999999986 4566666543 668899999999985 5566778889999988763
Q ss_pred CcCCCCCeeeEEEcCCCCC---cceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 358 DAEDGPPELLFIHGGHTSK---ISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
++..+.++... -.+..|+|+++ ++++|+.||+|.+|+++++.
T Consensus 221 --------~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 221 --------VKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred --------EeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCc
Confidence 34444444332 25789999999 68899999999999998774
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.3e-28 Score=199.79 Aligned_cols=264 Identities=18% Similarity=0.304 Sum_probs=220.8
Q ss_pred CCcEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433 113 NGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 113 ~~~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
.-++.+.+.+ +|.+.|..++.....+ ++.+++.|.+.+||.+.+ ..++.++.||.+.|+++.|++.+.
T Consensus 135 t~~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es----------g~CL~~Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 135 TVKFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES----------GACLATYTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred ceeEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecc----------ccceeeecccccceeeEEeccccc
Confidence 3456665554 7999999999887665 999999999999999998 677889999999999999999887
Q ss_pred ceEEEEeCCCcEEEEeC------CCCCC-------------------------C---CcccceeeeecCCccEeeEEEec
Q 014433 192 GHLLSGSDDAQICLWDI------NAAPK-------------------------N---KSLEAMQIFKVHEGVVEDVAWHL 237 (424)
Q Consensus 192 ~~l~s~~~dg~i~iwd~------~~~~~-------------------------~---~~~~~~~~~~~~~~~v~~~~~~~ 237 (424)
++++++.|++..||.. -.... . ..-.++..+.+|.+.|.+..|..
T Consensus 204 -L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 204 -LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred -eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 8999999999999972 11100 0 01134666888999999999998
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC
Q 014433 238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK 317 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~ 317 (424)
.+..+ ++++-|.+..+||+.++.. +..+.+|....+.++-+|..+ ++++.+.|.+.++||+|..-..+..|++|.
T Consensus 283 gg~Q~-vTaSWDRTAnlwDVEtge~---v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 283 GGQQM-VTASWDRTANLWDVETGEV---VNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred Cccee-eeeeccccceeeeeccCce---eccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccc
Confidence 88766 5999999999999999875 777889999999999999776 899999999999999997667788999999
Q ss_pred CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC
Q 014433 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN 397 (424)
Q Consensus 318 ~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 397 (424)
..|+++.|..+.+ +++|+.|.+|+|||++++.. .+.+++. .++++.++.+..++ +|+.--++.
T Consensus 358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRs-------------plATIRt-dS~~NRvavs~g~~-iIAiPhDNR 420 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRS-------------PLATIRT-DSPANRVAVSKGHP-IIAIPHDNR 420 (481)
T ss_pred cceeEEEEecCCc--eeecCCCceEEEeeeccccC-------------cceeeec-CCccceeEeecCCc-eEEeccCCc
Confidence 9999999999874 88999999999999998752 3334332 45789999998888 788777888
Q ss_pred cEEEEecCCccCC
Q 014433 398 ILQIWQMAENIYH 410 (424)
Q Consensus 398 ~i~vw~~~~~~~~ 410 (424)
.|++||++.+.+.
T Consensus 421 qvRlfDlnG~Rla 433 (481)
T KOG0300|consen 421 QVRLFDLNGNRLA 433 (481)
T ss_pred eEEEEecCCCccc
Confidence 9999999988764
No 81
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.4e-27 Score=196.75 Aligned_cols=270 Identities=20% Similarity=0.299 Sum_probs=204.9
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCc-----EEEecCCCceeEEEecCCCCceEEEE
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD-----LRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
.|.+.|+++...+...+++++|+.||.|.|||++.........-..+.. ..-.+|.-.|.++.|-|...++|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6899999999999877799999999999999998743222111111111 12235888999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC--CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+.|.++++||.++.+....+ + ..+.|.+-+|+|-. ..++|+|..+-.|++.|+.++.. .+.+.+|...
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F------~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~LsGHr~~ 190 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDF------K-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTLSGHRDG 190 (397)
T ss_pred cccceEEEeecccceeeEEe------e-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeeeccccCc
Confidence 99999999999876543222 2 46677777787743 35788999999999999999885 7788899999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE--------------ecCCCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--------------FDSHKEEVFQVGWNPKNETILASCCLGRR 341 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--------------~~~h~~~v~~~~~sp~~~~~l~s~~~dg~ 341 (424)
|.++.|+|..+++||+|+.||.|++||+|....+... -.+|.+.|++++|+.++. .+++++.|..
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r 269 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDR 269 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccc
Confidence 9999999999999999999999999999975333322 345778899999999996 6889999999
Q ss_pred EEEeeCCCCCcccCCCCcC---------------------------------CCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014433 342 LMVWDLSRIDEEQTPEDAE---------------------------------DGPPELLFIHGGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 388 (424)
+++|+..++.......... ......+..+.+|-..|.+..+.|+-.
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq- 348 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE- 348 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh-
Confidence 9999998875432111100 011233444456666677777777766
Q ss_pred EEEEEeCCCcEEEEec
Q 014433 389 VISSVAEDNILQIWQM 404 (424)
Q Consensus 389 ~l~s~~~dg~i~vw~~ 404 (424)
-+.++..|+.+..|-+
T Consensus 349 ~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhccccCCccccccc
Confidence 4677788888888877
No 82
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=9.4e-29 Score=216.43 Aligned_cols=228 Identities=20% Similarity=0.357 Sum_probs=186.5
Q ss_pred CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
+.+..+.+|+..|.++.|.|....+|++++.|+.|+||++.... .+++.+.+|..+|.+++|++++..++ +++.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sf 278 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASFNNCGTSFL-SASF 278 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhccccCCeee-eeec
Confidence 44678899999999999999666699999999999999998632 46888999999999999999998665 9999
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~ 328 (424)
|+.|++||+.++.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+ ++.++.+..|-+.|..+.|-++
T Consensus 279 D~~lKlwDtETG~~---~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 279 DRFLKLWDTETGQV---LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred ceeeeeeccccceE---EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccC
Confidence 99999999999886 44443 3567899999999988999999999999999999 7899999999999999999999
Q ss_pred CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC--------------------CCCee------------eEEEcCCC--
Q 014433 329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAED--------------------GPPEL------------LFIHGGHT-- 374 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------~~~~~------------~~~~~~h~-- 374 (424)
+. .+++++.|++++||+.+.....+.....+. ..... ...+.||.
T Consensus 354 g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 354 GR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred Cc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 97 688999999999999987643322111110 00011 11234564
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+.-..+.|+|||. +|++|+.||.+.+||.++-.+
T Consensus 433 Gys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 433 GYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred CceeeEEEcCCCC-eEEeecCCccEEEeechhhhh
Confidence 3456789999999 699999999999999987643
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-28 Score=219.49 Aligned_cols=257 Identities=19% Similarity=0.261 Sum_probs=213.1
Q ss_pred cCCcee---EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 124 HDGEVN---RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 124 h~~~v~---~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
|...|+ .+..++.+.++|.||+.||.|++|++.....++. ......++.|...|..+...-+++ .|+++|.|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s----~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsD 94 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS----TPYIASMEHHSDWVNDIILCGNGK-TLISASSD 94 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc----cchhhhhhhhHhHHhhHHhhcCCC-ceEEecCC
Confidence 444444 5566666666899999999999999988554432 113567888999999999998887 59999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-------CCCeeeee-cc
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-------SKPVQSVV-AH 272 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-------~~~~~~~~-~~ 272 (424)
-+|++|+...... -++..+..|.+.|.|+++-.....++|+||-|+.|.+||+.++.. ......+. ++
T Consensus 95 tTVK~W~~~~~~~----~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 95 TTVKVWNAHKDNT----FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ceEEEeecccCcc----hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 9999999986631 245667789999999999555567899999999999999997621 11222333 78
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
..+|++++.++.+. +|++|+..+.+++||.|+ .+.+..+.+|...|..+..+++|. -+++++.||+|++||+...
T Consensus 171 k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQ-- 245 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQ-- 245 (735)
T ss_pred ccceeeeecCCcce-EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeecccc--
Confidence 88999999999885 899999999999999999 677888889999999999999996 5889999999999999874
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
++++++..|...|+++.-+|+-. .+++|+.||.|..=++.+.
T Consensus 246 ------------rCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 246 ------------RCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------------ceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCc
Confidence 67888899999999999999988 6999999999999888773
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.1e-27 Score=194.75 Aligned_cols=243 Identities=20% Similarity=0.347 Sum_probs=192.9
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC-ceEEEEeCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGSDD 200 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~d 200 (424)
-.|.+.|++++.+ ++ ++|+|+.|-+|+|||+.+ ......+..|.+.|+++.|.+.-. ..|++|+.|
T Consensus 40 ~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k----------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GP-YVASGSSDETIHIYDMRK----------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred cccccceeEEEec--ce-eEeccCCCCcEEEEeccc----------hhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence 3589999999996 44 899999999999999988 455667888999999999987642 259999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
|.|.+|++.. +..+..+++|.+.|+.++.+|.++ +..+.+.|+.+++||+-.++.. .+.. -....+.|.
T Consensus 107 G~i~iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a-~v~~---L~~~at~v~ 175 (362)
T KOG0294|consen 107 GHIIIWRVGS------WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVA-FVLN---LKNKATLVS 175 (362)
T ss_pred CcEEEEEcCC------eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccc-eeec---cCCcceeeE
Confidence 9999999954 356788889999999999999997 5558899999999999887742 1222 233445599
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
|+|.|.+ |+.++.+ .|-+|-+.+ ......+.. ...+.++.|-..+ .|++|+.|+.|.+||....
T Consensus 176 w~~~Gd~-F~v~~~~-~i~i~q~d~-A~v~~~i~~-~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~---------- 239 (362)
T KOG0294|consen 176 WSPQGDH-FVVSGRN-KIDIYQLDN-ASVFREIEN-PKRILCATFLDGS--ELLVGGDNEWISLKDTDSD---------- 239 (362)
T ss_pred EcCCCCE-EEEEecc-EEEEEeccc-HhHhhhhhc-cccceeeeecCCc--eEEEecCCceEEEeccCCC----------
Confidence 9999995 6666554 588998876 333333332 3567778777654 6889999999999999863
Q ss_pred CCCCeeeEEEcCCCCCcceEEe--CCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 361 DGPPELLFIHGGHTSKISDFSW--NPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.++..+.+|..+|-++.+ .|++. +|+|+|.||.|+|||+....-
T Consensus 240 ----~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 240 ----TPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred ----ccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccccc
Confidence 557778899999999984 34555 799999999999999988733
No 85
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.2e-28 Score=223.45 Aligned_cols=258 Identities=15% Similarity=0.330 Sum_probs=202.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---CCceeEEEecCCCCceEEEEeCCC
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---STEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
....++|..+++...++++ + ...+.||.+....... ......... ...+..+.|.....++||+++..|
T Consensus 39 k~~~nAIs~nr~~~qiv~A-G-rs~lklyai~~~~~~~------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVA-G-RSLLKLYAINPNDFSE------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccccceEeecCCcceeEEe-c-ccceeeEeeCcccCCc------ceeeecccccceeeehhhcccccchhhhheeecCCC
Confidence 4567778888876644444 4 3467888877632221 111111111 124567889877778999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
.|.+||+...... +.+..+..|...++++.|++..++++++|+.||+|++||+|..+. ..++.+....|+.|+|
T Consensus 111 ~i~vWdlnk~~rn---k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 111 VISVWDLNKSIRN---KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTFRSNSESIRDVKF 184 (839)
T ss_pred cEEEEecCccccc---hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccccccchhhhceee
Confidence 9999999864221 234567889999999999999999999999999999999998664 5566677889999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|.-.+.|+++...|.+++||+|.+.++...+.+|.++|.++.|+|++ .+||||+.|+.|+|||+.....
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~--------- 254 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA--------- 254 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc---------
Confidence 998888999999999999999999999999999999999999999977 4899999999999999986432
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe--CCCcEEEEecCCccCC
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMAENIYH 410 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~~ 410 (424)
..+.+.. ...+|..++|-|..++.|++++ .|-.|+|||+...++.
T Consensus 255 ---~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 255 ---KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ---cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 1122221 2457999999999999999887 5889999999887653
No 86
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=185.69 Aligned_cols=242 Identities=20% Similarity=0.254 Sum_probs=197.1
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..--+|...|..++.+.++. -+|+|+.|..|.+||+.+ .+....+.+|.+.|+.+.|+.... .+++|+
T Consensus 53 ktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~T----------Gkv~Rr~rgH~aqVNtV~fNeesS-Vv~Sgs 120 (307)
T KOG0316|consen 53 KTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNT----------GKVDRRFRGHLAQVNTVRFNEESS-VVASGS 120 (307)
T ss_pred eeecCCCceeeecccccccc-ccccCCCCceEEEEEccc----------CeeeeecccccceeeEEEecCcce-EEEecc
Confidence 33447899999999999887 689999999999999998 677889999999999999998766 899999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|.++++||.++.. .++++.+......|.++.... +.+++|+.||+++.||+|.+.. .. .-...+|+|
T Consensus 121 fD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l---~s--Dy~g~pit~ 188 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL---SS--DYFGHPITS 188 (307)
T ss_pred ccceeEEEEcccCC----CCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeeccee---eh--hhcCCccee
Confidence 99999999998754 367777887888999998863 4677999999999999999774 11 223679999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEE--EEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ--VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~--~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
++|++++. ..++++.|+++++.|-.+ ++.+..+++|.+.-.. ++++... ..+++|+.||.|.+||+...
T Consensus 189 vs~s~d~n-c~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~------ 259 (307)
T KOG0316|consen 189 VSFSKDGN-CSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDE------ 259 (307)
T ss_pred EEecCCCC-EEEEeeccceeeecccch-hHHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccc------
Confidence 99999998 577889999999999888 8999999999876544 4455554 47999999999999999874
Q ss_pred CCcCCCCCeeeEEEcCCCCC-cceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 357 EDAEDGPPELLFIHGGHTSK-ISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
..+..+..+... |.+++++|....++ ++. ++.+.+|-
T Consensus 260 --------~~~sk~~~~~~v~v~dl~~hp~~~~f~-~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 260 --------TQISKLSVVSTVIVTDLSCHPTMDDFI-TAT-GHGDLFWY 297 (307)
T ss_pred --------eeeeeeccCCceeEEeeecccCcccee-Eec-CCceecee
Confidence 344455555555 78999999887544 433 45566664
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=197.12 Aligned_cols=264 Identities=20% Similarity=0.336 Sum_probs=215.5
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCC------CC------CCCC------------------CCCCCC
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS------KH------PSKP------------------PLDGAC 168 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~------~~------~~~~------------------~~~~~~ 168 (424)
.+-.+|.+.|++|+|++.+. ++++++.|++..||... .. ..+. ......
T Consensus 184 ~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 184 ATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred eeecccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 34568999999999999885 89999999999999832 10 0000 011223
Q ss_pred CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
.|+..+.+|.+.|.+..|...+. .+++++.|.+..+||++++ ..+..+.+|....+.++-+|..+ ++++.+.
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstHptQr-LVvTsSr 334 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTHPTQR-LVVTSSR 334 (481)
T ss_pred eeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccC------ceeccccCcchhccccccCCcce-EEEEecc
Confidence 46778999999999999999777 5999999999999999988 45677889999999999999875 7779999
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~ 328 (424)
|.+.++||+|.. ...+..+++|...|+++.|..+.+ +++|+.|.+|++||++++..++.++.. .++++.++.+..
T Consensus 335 DtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g 409 (481)
T KOG0300|consen 335 DTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKG 409 (481)
T ss_pred CceeEeccchhh--cceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecC
Confidence 999999999942 456788899999999999998665 889999999999999999999999986 689999999988
Q ss_pred CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEEeCCCcEEEEecCCc
Q 014433 329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~ 407 (424)
++ ++|.-..+..|++||++.....+- .-..-++|...|++++|..+.+ .-|+++|.|..+.=|++...
T Consensus 410 ~~-iIAiPhDNRqvRlfDlnG~RlaRl----------PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 410 HP-IIAIPHDNRQVRLFDLNGNRLARL----------PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred Cc-eEEeccCCceEEEEecCCCccccC----------CcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 75 788888889999999986543221 1123468999999999976543 12678899999999998764
No 88
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-28 Score=233.59 Aligned_cols=266 Identities=20% Similarity=0.349 Sum_probs=219.3
Q ss_pred EEEEeccCCceeEEEecCCCCc---EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433 118 IIQQINHDGEVNRARYMPQNPF---LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~---~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
.+-.+.-...-+.++|.+.+.. +||.|..||.|-+||...... ......+.+...|.+.|.+|.|++...++|
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----~~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----NASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc----CcchHHHhhhcccCCceeeeeccccCCcee
Confidence 3334445556778999987765 699999999999999876211 122344567788999999999999988899
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-
Q 014433 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ- 273 (424)
Q Consensus 195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~- 273 (424)
|+|+.||.|.|||++......... .....+.|.+++|+..-.++||+++.+|.+.|||+|..+. +..+..+.
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p---ii~ls~~~~ 205 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP---IIKLSDTPG 205 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc---ccccccCCC
Confidence 999999999999998754322221 2234678999999999999999999999999999998653 44444433
Q ss_pred -CCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 274 -SEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 274 -~~v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
..+..++|||++...+++++.|. .|.+||+|....+++++.+|...|.++.|++.+..+|++++.|+.|.+|+.++
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 35778999999988888887654 79999999988999999999999999999999988999999999999999998
Q ss_pred CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
+ +.+..+....+.+..+.|+|..+.++++++-||.|.|+.+....
T Consensus 286 g--------------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 286 G--------------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred c--------------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 5 66777777778899999999999889999999999999998764
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.7e-27 Score=221.01 Aligned_cols=241 Identities=23% Similarity=0.393 Sum_probs=206.5
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
|...+.+..|+. ..+++++.+++|++|+... ...+.. +.+|.+.|.++++.. +..+|++|+.|.+
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~----------~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNN----------GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKT 272 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeeccc----------ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCc
Confidence 567888888883 3699999999999999987 444555 899999999999987 5558999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
+++||..++ .+...+.+|...|.++...+ .++++|+.|.+|++|++.++.. +..+.+|..+|+++..+
T Consensus 273 ~rvWd~~sg------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~---l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 273 ERVWDCSTG------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC---LNLLRGHTGPVNCVQLD 340 (537)
T ss_pred EEeEecCCC------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce---EEEeccccccEEEEEec
Confidence 999999888 45777889999999998764 4567899999999999998764 77777899999999998
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+. ++++|+.|++|++||++. .++++++.+|..+|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 341 --~~-~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~----------- 403 (537)
T KOG0274|consen 341 --EP-LLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR----------- 403 (537)
T ss_pred --CC-EEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-----------
Confidence 44 799999999999999997 8999999999999999998875 368999999999999999841
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 412 (424)
+++.++.+|...+..+.+. +. +|++++.|+.|++||..++.....
T Consensus 404 --~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 404 --KCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred --hhhhhhcCCcccccccccc--cc-eeEeccccccEEEeecccCceeee
Confidence 4677888999988777665 44 799999999999999998866543
No 90
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=198.79 Aligned_cols=245 Identities=16% Similarity=0.267 Sum_probs=207.5
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
+.|..+|.|+.|+.+.. .+|+|+.||.|+||.+.+ ..++..+. +|...|+++.|+.++. .+++++.|
T Consensus 260 MMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~t----------G~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD 327 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIET----------GQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFD 327 (508)
T ss_pred eecccceEEEeecccHH-HhhccCcCCcEEEEEEec----------chHHHHhhhhhccCeeEEEEccCcc-hhhccccc
Confidence 45789999999999886 899999999999999998 45556665 7999999999999988 59999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
.++++.-+.+++ +++.+.+|++.|+...|.++|.+++ +++.||+|++|+.++..+...... .+...+|+++-
T Consensus 328 ~tvRiHGlKSGK------~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~-~~~d~~vnsv~ 399 (508)
T KOG0275|consen 328 QTVRIHGLKSGK------CLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKP-LGTDYPVNSVI 399 (508)
T ss_pred ceEEEeccccch------hHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccC-CCCcccceeEE
Confidence 999999998874 5677889999999999999998765 999999999999999876332222 23566899999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
.-|.++..++++....+|+|-++. ++.++.+.. ..+...+++.+|.|+ ++++.+.|+.++.|.+.++
T Consensus 400 ~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG------- 469 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSG------- 469 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecC-------
Confidence 888887788899999999999887 577777763 235677888999997 6889999999999999886
Q ss_pred CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
.+-.++.-|...|.+++-+|..+ +|++-++||.+++|..
T Consensus 470 -------~LE~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 470 -------KLERTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLKLWKP 508 (508)
T ss_pred -------ceeeeeecccccccccccCcccc-hhhhhcccchhhhcCC
Confidence 44556677888899999999988 8999999999999963
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.6e-26 Score=198.58 Aligned_cols=245 Identities=21% Similarity=0.319 Sum_probs=200.1
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-+|...|+.+.|+|+.. .+++++.|-.|+||.... .........|..+|+.+..+|.|. ||++++.||
T Consensus 258 ~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~----------~s~~~~~~~h~~~V~~ls~h~tge-YllsAs~d~ 325 (506)
T KOG0289|consen 258 KGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPL----------SSEPTSSRPHEEPVTGLSLHPTGE-YLLSASNDG 325 (506)
T ss_pred cCcceEEEEEEeccchh-heeecCCcceEEeecccc----------ccCccccccccccceeeeeccCCc-EEEEecCCc
Confidence 47999999999999875 789999999999999987 233456778999999999999998 899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
+..+.|++++.. +.... ...-.+++.+||||| .+|++|..||.|+|||+..+.. +..+.+|.++|.+|
T Consensus 326 ~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 326 TWAFSDISSGSQ------LTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAI 395 (506)
T ss_pred eEEEEEccCCcE------EEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc---cccCCCCCCceeEE
Confidence 999999988743 22111 123458999999998 4889999999999999998764 77888999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+|+.+| |+||++..|+.|++||+|+. +...++... ...|.++.|.+.|. +|+.++.|=.|++++-.+.
T Consensus 396 ~FsENG-Y~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k-------- 464 (506)
T KOG0289|consen 396 SFSENG-YWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTK-------- 464 (506)
T ss_pred EeccCc-eEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCC-eEEeecceeEEEEEecccc--------
Confidence 999877 57999999999999999984 455555532 34799999999996 6888877766666654332
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
....+..+..|.+..+.+.|..... +++++|.|..++++.+
T Consensus 465 ----~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 465 ----SWTEIKELADHSGLSTGVRFGEHAQ-YLASTSMDAILRLYAL 505 (506)
T ss_pred ----cceeeehhhhcccccceeeecccce-EEeeccchhheEEeec
Confidence 1255666677888889999999888 6999999999998865
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=189.97 Aligned_cols=247 Identities=16% Similarity=0.307 Sum_probs=191.0
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
-.+.|.+|+|+|+...++++|+-||+||+|+++.. +...+ .....|.++|.+++|+.+|. .+++|+.|+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-------g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~ 96 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-------GQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQA 96 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecC-------Ccccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCce
Confidence 45688999999977778989999999999999872 12222 34567999999999999997 69999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC-cEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
++||+.+++ ...+..|.++|..+.|-+... .+|++|+-|.+|+.||+|... ++.++. -...++++..-
T Consensus 97 k~wDL~S~Q-------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---pv~t~~-LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 97 KLWDLASGQ-------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---PVATLQ-LPERVYAADVL 165 (347)
T ss_pred EEEEccCCC-------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC---eeeeee-ccceeeehhcc
Confidence 999999873 345667999999999987543 367899999999999999855 455543 35677777654
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
.+ +++++..++.|.+|+++++....+... ..+-.+.+++..++.+. .|.|+-.|.+.|..+.....
T Consensus 166 --~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~--------- 232 (347)
T KOG0647|consen 166 --YP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNP--------- 232 (347)
T ss_pred --Cc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCc---------
Confidence 33 788889999999999987433322222 22446899999998874 68999999999999987532
Q ss_pred CCCeeeEEEcCCC---------CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 362 GPPELLFIHGGHT---------SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
..-+.++.|. ..|++++|+|... .|+|+|.||++.+||-...
T Consensus 233 ---~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 233 ---KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ---cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhh
Confidence 2223333333 2578899999877 7999999999999997654
No 93
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=7.1e-27 Score=198.70 Aligned_cols=215 Identities=25% Similarity=0.449 Sum_probs=177.3
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCC-cEEEecCCCceeEEEecCCCCceEEE
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP-DLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
++..-+|.+.=++|+|||-....+++|.--+.|++|...+ +.+.. ...+.+|+..|-.|+|+|...++|++
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~--------g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST--------GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeecc--------CceeecCccccccccchhhhccCCccCceEEe
Confidence 4555679999999999996555689998889999999887 22322 23466799999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
||.||+|+|||++.+.....+ ..+.|.+.|+.|.|+...+ +||+|+.||+++|||+|+-+..+++..++-|..+|
T Consensus 276 cS~DgsIrIWDiRs~~~~~~~----~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKAAV----STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eecCceEEEEEecCCCcccee----EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 999999999999988553222 2378999999999999887 88999999999999999988778999999999999
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCC---------------cceEecCC--CCCEEEEEEcCCCCcEEEEEECC
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKIST---------------ALHTFDSH--KEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~---------------~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
++|.|+|.....|++++.|..|.+||+.-... |.+.+..| +..+..+.|+++-+.++++.+.|
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 99999999888999999999999999864211 12222234 45788999999988899999999
Q ss_pred CeEEEee
Q 014433 340 RRLMVWD 346 (424)
Q Consensus 340 g~i~iwd 346 (424)
| +.||.
T Consensus 431 G-fnVfk 436 (440)
T KOG0302|consen 431 G-FNVFK 436 (440)
T ss_pred c-eeEEE
Confidence 9 66664
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.8e-26 Score=198.35 Aligned_cols=245 Identities=20% Similarity=0.324 Sum_probs=198.7
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
..+.++...|. ...++||+.|..+.++|... .+....+.||...|+.+.++|+.. .+++++.|..|+|
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s----------~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPS----------NQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecch----------hhhhhhccCcceEEEEEEeccchh-heeecCCcceEEe
Confidence 46778888886 34799999999999999987 466778999999999999999877 6999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec--cCCCeeEEEecC
Q 014433 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVNCLAFNP 283 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~v~~~~ 283 (424)
|....... ......|..+|+.+..+|.+.+++ +++.||+..+.|++++.. +..... ..-.+++.+|||
T Consensus 288 ws~~~~s~------~~~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 288 WSVPLSSE------PTSSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred eccccccC------ccccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcE---EEEEeeccccceeEEeeEcC
Confidence 99876543 334567999999999999999775 899999999999999875 333222 334689999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
+|- +|++|..||.|+|||+.+ ...+..|.+|.++|..++|+.+| ++||+++.|+.|++||+|.....+.
T Consensus 358 DgL-ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt-------- 426 (506)
T KOG0289|consen 358 DGL-IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKT-------- 426 (506)
T ss_pred Cce-EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccce--------
Confidence 997 899999999999999998 56889999999999999999999 6899999999999999998643221
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+.+.. ...|.++.|.+.|.+ |+.+|.|=.|++++-.+..+
T Consensus 427 ----~~l~~-~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 427 ----IQLDE-KKEVNSLSFDQSGTY-LGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred ----eeccc-cccceeEEEcCCCCe-EEeecceeEEEEEecccccc
Confidence 11121 236999999999995 66666665555555444433
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=201.53 Aligned_cols=270 Identities=19% Similarity=0.277 Sum_probs=210.1
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC---CC----CCCCCCcEEE-ecCCCceeEEEecCC
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP---PL----DGACSPDLRL-RGHSTEGYGLSWSKF 189 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~---~~----~~~~~~~~~~-~~h~~~v~~l~~~~~ 189 (424)
+.....|.-+|.+++++|++. +..+++.+|+|.=|++.+..... +. .....+...- .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 344557999999999999987 78899999999999987643220 00 0011122112 489999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~ 269 (424)
+. +|++|+.|..|.||+.++.. .++.+.+|.+.|.+++|-.....++ +++.|+.|++|++..... +.++
T Consensus 214 gk-ylatgg~d~~v~Iw~~~t~e------hv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~---vetl 282 (479)
T KOG0299|consen 214 GK-YLATGGRDRHVQIWDCDTLE------HVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSY---VETL 282 (479)
T ss_pred Cc-EEEecCCCceEEEecCcccc------hhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHH---HHHH
Confidence 98 89999999999999998773 4566789999999999987666565 899999999999998654 7778
Q ss_pred eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.+|.+.|..|......+ ++.+|+.|+++++|++.. .....+.+|.+.+-|++|-.+. .|++|+.+|.|.+|++..
T Consensus 283 yGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLK 357 (479)
T ss_pred hCCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecc
Confidence 89999999998877665 677788999999999954 5556778889999999998776 488999999999999987
Q ss_pred CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.+.......+..-.+.+ ..-.+..+|++++..|... ++++|+.+|+|++|.+.++
T Consensus 358 Kkplf~~~~AHgv~~~~--~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cCceeEeeccccccCCc--cccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence 65433222111110110 0012234899999999888 8999999999999999998
No 96
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.9e-25 Score=205.33 Aligned_cols=304 Identities=13% Similarity=0.213 Sum_probs=229.0
Q ss_pred HHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCC
Q 014433 32 YDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGC 111 (424)
Q Consensus 32 y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (424)
|..+-+..+..-.-+++|.|..... ..+++ . .+|.+....+....... .
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~-------~~lv~-l-----~nNtv~~ysl~~s~~~~------------------p 359 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTE-------NTLVL-L-----ANNTVEWYSLENSGKTS------------------P 359 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcc-------eeEEE-e-----ecCceEEEEeccCCCCC------------------c
Confidence 3444555555556689999987433 22332 2 23445555553210100 0
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
...+..-+...+|+..|.+++++.++. ++++|+ .+.++||+..+ .+.+.++... -+.+..|.|.+.
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~-~~~Sga-~~SikiWn~~t----------~kciRTi~~~--y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSSDSI-LLASGA-GESIKIWNRDT----------LKCIRTITCG--YILASKFVPGDR 425 (888)
T ss_pred cccccceeeeccchhheeEEEeecCce-eeeecC-CCcEEEEEccC----------cceeEEeccc--cEEEEEecCCCc
Confidence 112344456779999999999998764 666654 67999999987 5666666543 788899999665
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC----CCCee
Q 014433 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV----SKPVQ 267 (424)
Q Consensus 192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~----~~~~~ 267 (424)
++++|...|.+.+||+.+.. .+...+.|.+.|++++.+|++..+ ++|+.|.+|++||..-... .+.+.
T Consensus 426 -~Iv~G~k~Gel~vfdlaS~~------l~Eti~AHdgaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 426 -YIVLGTKNGELQVFDLASAS------LVETIRAHDGAIWSISLSPDNKGF-VTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred -eEEEeccCCceEEEEeehhh------hhhhhhccccceeeeeecCCCCce-EEecCCcEEEEEeEEEEeccCcccceee
Confidence 89999999999999997663 344556799999999999999865 5999999999999753111 11111
Q ss_pred -----eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433 268 -----SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 268 -----~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
..-.-...|.|++++|++. +||++--|.+|+||-+.+ -+-...+-+|.-||.|+..||++. +++|||.|.+|
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnV 574 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNV 574 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcC-eEEeccCCCce
Confidence 1112457899999999998 699999999999999998 466677889999999999999996 89999999999
Q ss_pred EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
+||-+..+.+ ...+-+|...|.++.|.|... ++.++|.|+.|+-||-..
T Consensus 575 KiWGLdFGDC--------------HKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 575 KIWGLDFGDC--------------HKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred EEeccccchh--------------hhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhh
Confidence 9999998744 555678999999999999776 899999999999997654
No 97
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.2e-25 Score=180.89 Aligned_cols=242 Identities=20% Similarity=0.327 Sum_probs=196.6
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+|.+.|-.++|.|..+.++|+++.|.+|++||+.. .++........+. .-+.|+|+|. +++.++.|.
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~----------~k~~~~i~~~~en-i~i~wsp~g~-~~~~~~kdD 128 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS----------GKCTARIETKGEN-INITWSPDGE-YIAVGNKDD 128 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc----------CcEEEEeeccCcc-eEEEEcCCCC-EEEEecCcc
Confidence 478889999999999888999999999999999987 5666666544444 4688999998 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
.|...|.++.+..... ...-.++.++|+.++. +|......|+|.|..... .+++..+++|.....||.|
T Consensus 129 ~it~id~r~~~~~~~~-------~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyps---Lkpv~si~AH~snCicI~f 197 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEE-------QFKFEVNEISWNNSND-LFFLTNGLGCVEILSYPS---LKPVQSIKAHPSNCICIEF 197 (313)
T ss_pred cEEEEEecccceeehh-------cccceeeeeeecCCCC-EEEEecCCceEEEEeccc---cccccccccCCcceEEEEE
Confidence 9999999876432221 2455788999997665 444555679999988775 6689999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|+|+ .||+|+.|..+.+||+.. --+++.+.-+.-+|..+.||.+|+ +||+++.|-.|-|=++.++..
T Consensus 198 ~p~Gr-yfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~--------- 265 (313)
T KOG1407|consen 198 DPDGR-YFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDR--------- 265 (313)
T ss_pred CCCCc-eEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCe---------
Confidence 99999 599999999999999997 577888888999999999999996 899999999999999988742
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC---------CcEEEEecC
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED---------NILQIWQMA 405 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---------g~i~vw~~~ 405 (424)
+... .+.++...++|+|... |||-++.| |.+++|-+.
T Consensus 266 -----~~eI-~~~~~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 266 -----VWEI-PCEGPTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred -----EEEe-eccCCceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence 2222 3567889999999988 67666543 566666554
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=200.14 Aligned_cols=248 Identities=17% Similarity=0.273 Sum_probs=203.0
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...+.+++.+++++ +||+|+.|..|.||+..+ ..++..+.+|.+.|.+++|-. +++.|++++.|++
T Consensus 200 ~h~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t----------~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drs 267 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGK-YLATGGRDRHVQIWDCDT----------LEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRS 267 (479)
T ss_pred cccceeEEEEEcCCCc-EEEecCCCceEEEecCcc----------cchhhcccccccceeeeeeec-CccceeeeecCCc
Confidence 8999999999999997 899999999999999998 677888999999999999987 4557999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|++|+++.. ..+.++.+|.+.|.+|.-..-++ ++.+|+.|+++++|++.... ...+.++.+.+-|++|-
T Consensus 268 vkvw~~~~~------s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 268 VKVWSIDQL------SYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFI 336 (479)
T ss_pred eEEEehhHh------HHHHHHhCCccceeeechhcccc-eEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEe
Confidence 999999754 44666788999999998877664 66677799999999994432 33456888899999998
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CC-----------CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SH-----------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h-----------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.+. .|++|+.+|.|.+|++-+ .+|+.+.. +| +..|++++..|... ++|+|+.+|+|++|-+..+
T Consensus 337 n~~--HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 337 NDE--HFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccc--ceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence 654 489999999999999988 56665543 22 23799999999875 8999999999999999875
Q ss_pred CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
-. +..+++.+. -.+.|++++|+++|+.+++..+....+--|-.....
T Consensus 413 ~r----------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 413 LR----------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred cc----------ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence 32 124455554 467899999999999878888877777777665543
No 99
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=200.90 Aligned_cols=280 Identities=23% Similarity=0.311 Sum_probs=211.4
Q ss_pred HhhhcCCCC--CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCC-----CCCCcccCCCCCcCCCC
Q 014433 34 LVITHALEW--PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL-----DDSENDARHYDDDRSDF 106 (424)
Q Consensus 34 ~~~~~~~~~--p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~-----~~~~~~~~~~~~~~~~~ 106 (424)
++..|.+-. +.|+++|+-.+... +-....+.+||... .|.||.+.+-. -..-.-.....
T Consensus 164 lYvHHD~ilpafPLC~ewld~~~~~---~~~gNyvAiGtmdp-----~IeIWDLDI~d~v~P~~~LGs~~sk~~------ 229 (463)
T KOG0270|consen 164 LYVHHDFILPAFPLCIEWLDHGSKS---GGAGNYVAIGTMDP-----EIEIWDLDIVDAVLPCVTLGSKASKKK------ 229 (463)
T ss_pred eeEecceeccCcchhhhhhhcCCCC---CCCcceEEEeccCc-----eeEEeccccccccccceeechhhhhhh------
Confidence 344555444 45899999873322 22236788999643 58888876431 11100000000
Q ss_pred CCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEe
Q 014433 107 GGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW 186 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 186 (424)
...++ +-...-+|...|..++|+..-+++||+|+.|.+|.+||+.+ .++..++..|...|.+++|
T Consensus 230 ----~k~~k-~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~----------g~p~~s~~~~~k~Vq~l~w 294 (463)
T KOG0270|consen 230 ----KKKGK-RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT----------GKPKSSITHHGKKVQTLEW 294 (463)
T ss_pred ----hhhcc-cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC----------CCcceehhhcCCceeEEEe
Confidence 00111 11223469999999999999889999999999999999998 6778888899999999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433 187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
+|..+.+|++|+.|++|.+.|.+..... -..+ ...+.|..++|.|...+.|.++..||+|+-+|+|... +++
T Consensus 295 h~~~p~~LLsGs~D~~V~l~D~R~~~~s-----~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~v 366 (463)
T KOG0270|consen 295 HPYEPSVLLSGSYDGTVALKDCRDPSNS-----GKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPV 366 (463)
T ss_pred cCCCceEEEeccccceEEeeeccCcccc-----CceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--Cce
Confidence 9999989999999999999999853221 1112 2467899999999999999999999999999999976 578
Q ss_pred eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433 267 QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344 (424)
Q Consensus 267 ~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i 344 (424)
.++++|.++|.++++++..+++++|++.|+.|++|++... .+ +......-+...|.++.|+-..+||.|+..+.++|
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-CCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 9999999999999999999999999999999999999752 22 11111112347788889988889999999999999
Q ss_pred eeCCCCC
Q 014433 345 WDLSRID 351 (424)
Q Consensus 345 wd~~~~~ 351 (424)
||+.+..
T Consensus 446 wd~~~~~ 452 (463)
T KOG0270|consen 446 WDIFTNS 452 (463)
T ss_pred eecccCh
Confidence 9998753
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=209.99 Aligned_cols=337 Identities=16% Similarity=0.235 Sum_probs=244.9
Q ss_pred hhHHHHhhhcCCCCCccEEEEccC-CCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCc-------c--cCC
Q 014433 29 PFLYDLVITHALEWPSLTVEWLPD-REEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN-------D--ARH 98 (424)
Q Consensus 29 ~~~y~~~~~~~~~~p~~~~~~~p~-~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~-------~--~~~ 98 (424)
...|.+|+.-..-| .++-+|. ...++....+...|+.+ ..++.|++|.+..-.+..+. + .--
T Consensus 360 gk~~s~lyHS~ciW---~Ve~~p~nv~~~~~aclp~~cF~TC-----SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~ 431 (1080)
T KOG1408|consen 360 GKCSSMLYHSACIW---DVENLPCNVHSPTAACLPRGCFTTC-----SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIP 431 (1080)
T ss_pred cceeeeeeccceee---eeccccccccCcccccCCccceeEe-----cCCCcEEEeecccccccceeecccchhhhhcCc
Confidence 44667777666555 5677774 33333444555555543 37789999988752222111 1 111
Q ss_pred CCCcC-CCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 014433 99 YDDDR-SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (424)
Q Consensus 99 ~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h 177 (424)
|.+.+ ..+...+...............-.+.+++.+|+++ .||+|..-|+++||++.. ......+.+|
T Consensus 432 y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~----------l~~~~~~eAH 500 (1080)
T KOG1408|consen 432 YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQE----------LEYTCFMEAH 500 (1080)
T ss_pred cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehh----------hhhhhheecc
Confidence 22222 11112222222333344556677899999999997 799999999999999987 4556678899
Q ss_pred CCceeEEEecCC--CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEE
Q 014433 178 STEGYGLSWSKF--KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLI 254 (424)
Q Consensus 178 ~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i 254 (424)
..+|.||.|+.. +..+|++++.|..|.|+|+.. .+.++..+.+|...|+++.|-..+ +.-+++++.|..|.+
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF 575 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF 575 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence 999999999853 334799999999999999964 345677888999999999998776 223458889988764
Q ss_pred EEcCCCCC--CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---CCCCEEEEEEcCCC
Q 014433 255 WDLRTPSV--SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKN 329 (424)
Q Consensus 255 ~d~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~sp~~ 329 (424)
--.+.... ..+..........++.|+..|..+ ++++++.|+.|+|||+.+ ++..+.|++ |.+....+...|.|
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG 653 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCc
Confidence 33322111 011111112345789999999887 699999999999999998 677777764 66788899999999
Q ss_pred CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
- ++|+.+.|.++.++|+.++ +++....||...|+++.|.+|-+ -|++.+.||+|.||++...
T Consensus 654 i-Y~atScsdktl~~~Df~sg--------------EcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 654 I-YLATSCSDKTLCFVDFVSG--------------ECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred c-EEEEeecCCceEEEEeccc--------------hhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECchh
Confidence 4 8999999999999999986 67888899999999999999999 4888899999999999764
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.9e-27 Score=203.28 Aligned_cols=255 Identities=18% Similarity=0.264 Sum_probs=203.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.+.|..+.|.++.. .|++|+.|..|++|+... .......++.+..+.|+++.|.+++. ++++++.|+.
T Consensus 173 ~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~--------~k~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~ 242 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLG--------EKSELISTLAGSLGNITSIDFDSDNK-HVIAASNDKN 242 (459)
T ss_pred ccccccceeEEccCcc-hhhhcchhhhhhhhhccc--------chhhhhhhhhccCCCcceeeecCCCc-eEEeecCCCc
Confidence 5899999999999754 799999999999999987 33455677888899999999999888 6888999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
+++|++... +...++.+|++.|+++.|...... +++|+.|.+|++||+....+.+.+. ..+.+..|..+
T Consensus 243 ~r~Wnvd~~------r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~cnDI~~~ 311 (459)
T KOG0288|consen 243 LRLWNVDSL------RLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVL----PGSQCNDIVCS 311 (459)
T ss_pred eeeeeccch------hhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheecccc----ccccccceEec
Confidence 999999876 345667889999999999877654 6699999999999999866533332 24456666665
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+ ..+++|..|+.|++||.|. ..+......+. .|+++..++++.. |.+++.|.++.+.|+++..-.+...
T Consensus 312 ~---~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~s----- 380 (459)
T KOG0288|consen 312 I---SDVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFS----- 380 (459)
T ss_pred c---eeeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCCeE-EeeecCCCceeeeecccccEEEEee-----
Confidence 2 3688999999999999998 67788888754 9999999999975 5677999999999999854322110
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCCC
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDL 415 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 415 (424)
......+| ..+.+.|+|++.| +++||.||.|+||++.++.++..-..
T Consensus 381 ---A~g~k~as--DwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 381 ---AEGFKCAS--DWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ---cccccccc--ccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEecc
Confidence 01111222 3788999999994 89999999999999999988754433
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=197.46 Aligned_cols=237 Identities=20% Similarity=0.300 Sum_probs=188.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+..+.|+++.|.+++.+ +++++.|+.+++|++.. .....++.+|.+.|+++.|..... .+++|+.|.+
T Consensus 217 Gs~g~it~~d~d~~~~~-~iAas~d~~~r~Wnvd~----------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRt 284 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKH-VIAASNDKNLRLWNVDS----------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRT 284 (459)
T ss_pred ccCCCcceeeecCCCce-EEeecCCCceeeeeccc----------hhhhhhhcccccceeeehhhcccc-ceeeccccch
Confidence 34578999999999975 55568899999999988 566778999999999999988665 4999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|++||+....+.+++- ....+.+|+.+ ...+++|..|+.|++||+++... ......+ +.|+++..+
T Consensus 285 iK~WDl~k~~C~kt~l-------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~---~~sv~~g-g~vtSl~ls 350 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVL-------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADK---TRSVPLG-GRVTSLDLS 350 (459)
T ss_pred hhhhhhhhhheecccc-------ccccccceEec---ceeeeecccccceEEEeccCCce---eeEeecC-cceeeEeec
Confidence 9999998764433321 24567777766 34567999999999999999764 5555554 489999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC----CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSH----KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+++.. +.+.+.|.++.+.|+|+ ......+.+. ....+.+.|||++. ++++|+.||.|+||++.+++.
T Consensus 351 ~~g~~-lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKl------ 421 (459)
T KOG0288|consen 351 MDGLE-LLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKL------ 421 (459)
T ss_pred cCCeE-EeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceE------
Confidence 98886 55668999999999998 5666665532 23589999999996 799999999999999998743
Q ss_pred cCCCCCeeeEEEcCCC--CCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 359 AEDGPPELLFIHGGHT--SKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
.+.+.... ..|++++|+|.|.+ +++++.++.+.+|.
T Consensus 422 --------E~~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 422 --------EKVLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVTLWT 459 (459)
T ss_pred --------EEEeccCCCCcceEEEEEcCCCch-hhcccCCcceEecC
Confidence 33333322 25999999999996 66778899999994
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.5e-26 Score=206.38 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=202.7
Q ss_pred EeccCCceeE-EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 121 QINHDGEVNR-ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 121 ~~~h~~~v~~-~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..+|.+-|.. ++|.+..+..+++|+.|++|.+|.... ..|...+++|...|.+++...++. +++||.
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~----------~~P~~~LkgH~snVC~ls~~~~~~--~iSgSW 120 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ----------AEPLYTLKGHKSNVCSLSIGEDGT--LISGSW 120 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCC----------CCchhhhhccccceeeeecCCcCc--eEeccc
Confidence 3457777777 888764445799999999999999987 688899999999999999766554 999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|.++++|.... +...+.+|+..|++++..|.+ .++||+.|.+|++|.-.+ .+.++.+|...|+.+
T Consensus 121 D~TakvW~~~~--------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~-----~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 121 DSTAKVWRIGE--------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT-----LLKTFSGHTDCVRGL 185 (745)
T ss_pred ccceEEecchh--------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc-----hhhhhccchhheeee
Confidence 99999998753 344578999999999999987 456999999999997633 467888999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
++-+++. |++++.||.|++|++. +..+..+.+|++-|.++...++++ ++++++.|++++||+..
T Consensus 186 ~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~----------- 249 (745)
T KOG0301|consen 186 AVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD----------- 249 (745)
T ss_pred EEecCCC--eEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC-----------
Confidence 9999765 7899999999999994 689999999999999999666664 79999999999999976
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 413 (424)
++...+.-....|+++.+-++|. |++|+.||.|+||........+++
T Consensus 250 -----e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~R~As~e 296 (745)
T KOG0301|consen 250 -----ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKDRKASDE 296 (745)
T ss_pred -----ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecccccCCHH
Confidence 33334443345799999999998 788899999999999877655443
No 104
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=6.4e-25 Score=186.14 Aligned_cols=208 Identities=18% Similarity=0.320 Sum_probs=175.5
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+...-+|.+.|+++.|+.++. +||||..+|.|+||...+ ......+..-...+.-+.|+|.+. .|+.|
T Consensus 99 ~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~st----------g~~~~~~~~e~~dieWl~WHp~a~-illAG 166 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVST----------GGEQWKLDQEVEDIEWLKWHPRAH-ILLAG 166 (399)
T ss_pred eeEecCCCCceEEEEEccCce-EEEecCCCccEEEEEccc----------CceEEEeecccCceEEEEeccccc-EEEee
Confidence 355668999999999999997 999999999999999988 344455555667788899999776 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC--------------
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------- 263 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-------------- 263 (424)
+.||.+.+|.+... ...+.+.+|..++++-.|.|+|+++ +++..||+|++|++.++...
T Consensus 167 ~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G~f~pdGKr~-~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQ------ALCKVMSGHNSPCTCGEFIPDGKRI-LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred cCCCcEEEEECCCc------ceeeEecCCCCCcccccccCCCceE-EEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 99999999999765 2456788999999999999999865 59999999999999875321
Q ss_pred ------------------------------------------------------------------------------CC
Q 014433 264 ------------------------------------------------------------------------------KP 265 (424)
Q Consensus 264 ------------------------------------------------------------------------------~~ 265 (424)
..
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 11
Q ss_pred eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
++....|..+|+.+.|-+ .. .|++++.+|.|+.||.|+ ++.+.++.+|...|.+++.+|+.+ +++|+|.|++.+||
T Consensus 320 ~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 320 LRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDART-GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVF 395 (399)
T ss_pred hheeccCCCceEEEEEcC-cc-hheeeccCceEEeeeccc-cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEE
Confidence 222335777889999988 44 588999999999999999 899999999999999999999985 89999999999999
Q ss_pred eCC
Q 014433 346 DLS 348 (424)
Q Consensus 346 d~~ 348 (424)
+..
T Consensus 396 ~v~ 398 (399)
T KOG0296|consen 396 EVP 398 (399)
T ss_pred ecC
Confidence 864
No 105
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=192.51 Aligned_cols=252 Identities=17% Similarity=0.228 Sum_probs=197.9
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
..|.+.|.-+.|+++|+ +||+++.|.+..+|.+... ...+...++.+|..+|..+.|+|+.. +|++|+.|.
T Consensus 221 ~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d-------~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e 291 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYD-------VHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDE 291 (519)
T ss_pred hhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecC-------cceeeeeeeecccCceEEEEECCCCC-eEEecCchH
Confidence 36999999999999997 8999999999999998762 22455778999999999999999988 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-CCCeeEEE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVNCLA 280 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~v~ 280 (424)
.+.+||+.++.....+. .++...+.+++|.|++.. |++|+.|+.+..||+.... +....+- ...|.+++
T Consensus 292 ~~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYP-----SGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLA 361 (519)
T ss_pred heeeccCCcchhhhhcc-----cCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch----hhcccccccceeEEEE
Confidence 99999999885432221 235678999999999976 4699999999999998644 2222222 24689999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
..++|.+ +++.+.|..|++|+... ......+. ...+|++++.|.++. ++++.-.+..+++||+...
T Consensus 362 it~Dgk~-vl~v~~d~~i~l~~~e~-~~dr~lis-e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~---------- 427 (519)
T KOG0293|consen 362 ITYDGKY-VLLVTVDKKIRLYNREA-RVDRGLIS-EEQPITSFSISKDGK-LALVNLQDQEIHLWDLEEN---------- 427 (519)
T ss_pred EcCCCcE-EEEEecccceeeechhh-hhhhcccc-ccCceeEEEEcCCCc-EEEEEcccCeeEEeecchh----------
Confidence 9999997 45556899999999876 33333333 467999999999996 6777778889999999853
Q ss_pred CCCCeeeEEEcCCCCC--cceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 361 DGPPELLFIHGGHTSK--ISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
.++..+.||... |..-+|.-....+++||++|+.|+||+..++.+-
T Consensus 428 ----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 428 ----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred ----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 555666777543 4455666544348999999999999999888653
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-25 Score=204.40 Aligned_cols=239 Identities=24% Similarity=0.318 Sum_probs=203.9
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeE-EEecCCCCceEEEEeC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-LSWSKFKEGHLLSGSD 199 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~ 199 (424)
..+|...|..+++.+.. .+++++.||++++|+-.. ........+.+|.+-|.. +++.+..+..|++|+.
T Consensus 10 l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~--------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKG--------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred eccCccchheeEecCCe--EEeecCCCCceeeeeccC--------cccccceecccCcceeeccceeccccCcceEeecc
Confidence 34799999999987744 689999999999999765 445556678888887766 8887755557999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
|.+|.+|.+.+. .++..+.+|...|.+++...++. +++|+-|.++++|-+..- ...+.+|+..|.++
T Consensus 80 D~~i~v~~~~~~------~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l-----~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 80 DTTIIVFKLSQA------EPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL-----VYSLQGHTASVWAV 146 (745)
T ss_pred cceEEEEecCCC------CchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh-----hcccCCcchheeee
Confidence 999999998765 56778899999999999777764 569999999999987653 34578999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
+.-|.+ .++||+.|.+|++|.- +..++++.+|..-|..+++-+++. |++|+.||.|++|++..
T Consensus 147 ~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g---------- 209 (745)
T KOG0301|consen 147 ASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG---------- 209 (745)
T ss_pred eecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC----------
Confidence 999977 4889999999999964 578999999999999999999874 78999999999999954
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
+++..+.||++.|++++...++. +++|+|+|++++||+..
T Consensus 210 -----e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 210 -----EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -----ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 77889999999999999666666 79999999999999986
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=7.1e-25 Score=182.15 Aligned_cols=243 Identities=17% Similarity=0.303 Sum_probs=185.9
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
-...|.++.|+|.+.. |++++.||.+++|++... . ......|..++.+++|.+.. .+++|+.||.|
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~----------~-l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~v 77 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPAN----------S-LKLKFKHGAPLLDCAFADES--TIVTGGLDGQV 77 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccch----------h-hhhheecCCceeeeeccCCc--eEEEeccCceE
Confidence 3568999999998775 555579999999999872 2 22233489999999999843 49999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~ 283 (424)
+.+|++++.. ..+..|..+|.+|.+.+... .+++|+-|++|++||.|.... ...+. ....|.|+...
T Consensus 78 r~~Dln~~~~-------~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~---~~~~d-~~kkVy~~~v~- 144 (323)
T KOG1036|consen 78 RRYDLNTGNE-------DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVV---VGTFD-QGKKVYCMDVS- 144 (323)
T ss_pred EEEEecCCcc-------eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccc---ccccc-cCceEEEEecc-
Confidence 9999998743 33556999999999998655 556999999999999997332 33332 34589998876
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 284 FNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+. .|++|+.+..|.+||+|+...+.+... .-+-.+.++++-|++.. +++++-||+|.+=.+....+.+
T Consensus 145 -g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~-------- 213 (323)
T KOG1036|consen 145 -GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQ-------- 213 (323)
T ss_pred -CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHh--------
Confidence 44 588999999999999999777664333 23457899999997764 7788999999876665542222
Q ss_pred CCeeeEEEcCCC---------CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 363 PPELLFIHGGHT---------SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 363 ~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...+.++.|. .+|++++|+|-.. .|+|||.||.|.+||+...
T Consensus 214 --skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 214 --SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred --hhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch
Confidence 2234444443 2699999999876 7999999999999999765
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.8e-25 Score=212.70 Aligned_cols=262 Identities=19% Similarity=0.307 Sum_probs=205.4
Q ss_pred eccC-CceeEEEecCCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCC--CCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 122 INHD-GEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLD--GACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 122 ~~h~-~~v~~~~~~p~~~~~latg~--~dg~v~iw~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
++|. ..|.+|..+|++. .+|||+ .||.++||+...-..+.... .....+.++..|.+.|.|+.|+|+|. +||+
T Consensus 9 v~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEee
Confidence 3444 5689999999997 799999 89999999987633222111 12345667888999999999999998 8999
Q ss_pred EeCCCcEEEEeCCCC------------CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433 197 GSDDAQICLWDINAA------------PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~ 264 (424)
|+.|+.|.||..... .....++....+.+|...|.+++|+|++. ++|+++.|++|.||+.++.+
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~--- 162 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFE--- 162 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccce---
Confidence 999999999998731 11234567788899999999999999875 77899999999999999964
Q ss_pred CeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC------CCCEEEEEEcCCCCcEEEEEEC
Q 014433 265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH------KEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h------~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
.+..+.+|.+.|-.+.|+|-|+ +||+-+.|++|+||.+.+ ....+.+..+ ......+.|||+|. +|++...
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA 239 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNA 239 (942)
T ss_pred eeeeeecccccccceEECCccC-eeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcC-eecchhh
Confidence 4788899999999999999999 599999999999999776 3444444332 34578999999997 5666533
Q ss_pred ----CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC------C---------Cc-EEEEEeCCCc
Q 014433 339 ----GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC------E---------DW-VISSVAEDNI 398 (424)
Q Consensus 339 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~---------~~-~l~s~~~dg~ 398 (424)
-.++.|.+-.+. ..-..+-||..++..++|+|. . .| ++|+|+.|++
T Consensus 240 ~n~~~~~~~IieR~tW--------------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS 305 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTW--------------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS 305 (942)
T ss_pred ccCCcceeEEEecCCc--------------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence 235777766443 334556799999999999983 1 12 7899999999
Q ss_pred EEEEecCC
Q 014433 399 LQIWQMAE 406 (424)
Q Consensus 399 i~vw~~~~ 406 (424)
|-||....
T Consensus 306 lSVW~T~~ 313 (942)
T KOG0973|consen 306 LSVWNTAL 313 (942)
T ss_pred EEEEecCC
Confidence 99998754
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.8e-25 Score=184.44 Aligned_cols=230 Identities=23% Similarity=0.418 Sum_probs=183.0
Q ss_pred EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC--Ccc--c-----ceeeeecCCccEeeEEEecCCCcEEE
Q 014433 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN--KSL--E-----AMQIFKVHEGVVEDVAWHLRHEYLFG 244 (424)
Q Consensus 174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~--~-----~~~~~~~~~~~v~~~~~~~~~~~~~~ 244 (424)
...|.+.|++|...+....++++|+.||.|.+||++....- .-+ + ....-.+|.-.|.++.|-|.+.-+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 34588999999999887779999999999999999865411 100 0 11123467889999999998878999
Q ss_pred EEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEE
Q 014433 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ 322 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~ 322 (424)
+++-|.+++|||..+.+. ...+ .-++.|++-+++|-.. .++|+|..+-.|++-|+.+ +..-+++.+|...|.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~---a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE---AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLA 193 (397)
T ss_pred cccccceEEEeeccccee---eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEE
Confidence 999999999999998553 3333 3467788888888543 4788888899999999998 8899999999999999
Q ss_pred EEEcCCCCcEEEEEECCCeEEEeeCCCC-CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433 323 VGWNPKNETILASCCLGRRLMVWDLSRI-DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 401 (424)
+.|+|..+++|++|+.||.|++||++.. .+.......+...+..+..-..|.+.|++++|+.++.+ +++++.|..+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceEE
Confidence 9999999999999999999999999876 33333322222223344456789999999999999995 778888999999
Q ss_pred EecCCccC
Q 014433 402 WQMAENIY 409 (424)
Q Consensus 402 w~~~~~~~ 409 (424)
|+...+.-
T Consensus 273 wn~~~G~n 280 (397)
T KOG4283|consen 273 WNMESGRN 280 (397)
T ss_pred eecccCcc
Confidence 99988753
No 110
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=6.3e-25 Score=191.32 Aligned_cols=263 Identities=20% Similarity=0.291 Sum_probs=202.7
Q ss_pred ccCCceeEEEecCCCC-cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 123 NHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~-~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.|.+.|++++|+|... .++|+|..-|.|-+||+..... .......+..|..+|.+|.|+|.+...+++.|.||
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC------ccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 4889999999999765 7999999999999999963211 12334567789999999999999988999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
+|++-|++..... .+.....-...+.++.|+.....++ .+..=|.+.+||+|++.. ....+..|...|++|++
T Consensus 258 tiR~~D~~~~i~e----~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 258 TIRLQDFEGNISE----EVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeeeeecchhhH----HHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCc--cchhhhhhhcccceeec
Confidence 9999999876332 1222222345677888888877665 666667999999999764 34555678889999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCC---cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+|..+++|||++.|++++|||+|+... |+.....|...|.++.|||.+.. |++.+.|..|+|||.......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~----- 404 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK----- 404 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccccc-----
Confidence 999999999999999999999997532 34455579999999999999986 889999999999998522111
Q ss_pred cCCCCCeeeEEEcCCC-C--CcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 359 AEDGPPELLFIHGGHT-S--KISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~-~--~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
. ++.....|.... . ......|.|+.. +|+.|..-..|-|++-+.+.
T Consensus 405 --~-~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 405 --D-EPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred --C-CccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCE
Confidence 1 112222222111 1 245678999888 79999988899999998887
No 111
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=208.76 Aligned_cols=215 Identities=17% Similarity=0.319 Sum_probs=168.9
Q ss_pred EEe-cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCC--------------------------------CC-----
Q 014433 173 RLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP--------------------------------KN----- 214 (424)
Q Consensus 173 ~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------~~----- 214 (424)
.+. +|.+.|+++.|+++|. |||+|+.||.|+||.+.... ..
T Consensus 261 e~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 344 7999999999999998 89999999999999886600 00
Q ss_pred -----------------CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433 215 -----------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 215 -----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
..-+++..+.+|.+.|.+|.|+.++ +|++++.|.+|++|++....+ +..+ .|...|+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C---L~~F-~HndfVT 413 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC---LKVF-SHNDFVT 413 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcce---eeEE-ecCCeeE
Confidence 0005567788999999999999865 556999999999999998665 5444 5999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
||+|+|...++|++|+-||.|+||++.. .+.+..... ..-|++++|.|+|+ ..+.|+.+|.+++|+.......+...
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d-~~Vv~W~Dl-~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISD-KKVVDWNDL-RDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCc-CeeEeehhh-hhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeee
Confidence 9999998888999999999999999987 455544444 58899999999996 68899999999999998754322111
Q ss_pred CcCCCCCeeeEEE----cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 358 DAEDGPPELLFIH----GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 358 ~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
+... ..|. .|+++.|.|....-++.++.|..|+|+|..+.
T Consensus 491 ---------I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 491 ---------IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred ---------EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 1111 1123 79999999876543555578999999999543
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=193.15 Aligned_cols=262 Identities=18% Similarity=0.274 Sum_probs=204.0
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
+..+.+.-+++|.+++-+|.|. +++.|+..|.+++|.+.+ ...+..+.+|-..|++|.|+.++. +|++
T Consensus 73 ~~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelss----------G~LL~v~~aHYQ~ITcL~fs~dgs-~iiT 140 (476)
T KOG0646|consen 73 QVVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSS----------GILLNVLSAHYQSITCLKFSDDGS-HIIT 140 (476)
T ss_pred hhhhhcccccceeeeecCCCce-EEEeecccCcEEEEEecc----------ccHHHHHHhhccceeEEEEeCCCc-EEEe
Confidence 3345667789999999999885 777777999999999998 555667789999999999999998 8999
Q ss_pred EeCCCcEEEEeCCCC---CCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 197 GSDDAQICLWDINAA---PKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
|+.||.|.+|.+..- .......++..+..|.-+|+++...+.+ .-.+++++.|.++++||+..+.. +.++ ..
T Consensus 141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L---Llti-~f 216 (476)
T KOG0646|consen 141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL---LLTI-TF 216 (476)
T ss_pred cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee---eEEE-ec
Confidence 999999999987532 2223556788899999999999987753 23456999999999999998764 3332 35
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---------------CcceEecCCCC--CEEEEEEcCCCCcEEEE
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS---------------TALHTFDSHKE--EVFQVGWNPKNETILAS 335 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~---------------~~~~~~~~h~~--~v~~~~~sp~~~~~l~s 335 (424)
+..+.+++.+|-.. .+.+|+.+|.|.+.++.... ..+..+.+|.+ +|+|++.+-+| .+|++
T Consensus 217 p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlS 294 (476)
T KOG0646|consen 217 PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLS 294 (476)
T ss_pred CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEe
Confidence 78899999999776 68999999999999876532 23455678887 99999999999 58999
Q ss_pred EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
|+.||.|+|||+.+. ++++++....++|+.+.+.|-.+..+..-.....+-.|++...+..
T Consensus 295 Gd~dg~VcvWdi~S~--------------Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i~~ 355 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSK--------------QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMIPN 355 (476)
T ss_pred eCCCCCEEEEecchH--------------HHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccCCc
Confidence 999999999999875 4444444456778888887765533433344445556666554443
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-24 Score=198.59 Aligned_cols=236 Identities=22% Similarity=0.368 Sum_probs=189.7
Q ss_pred eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 208 (424)
+-+.|+..+ .+|+|. ...|++|+... + ........+...|+++.|+++|. +|++|..+|.|.|||.
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s--------~--~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~ 246 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASS--------G--SVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDV 246 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCC--------C--ceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEeh
Confidence 346677543 677765 45899999887 2 22222223378999999999998 7999999999999999
Q ss_pred CCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433 209 NAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287 (424)
Q Consensus 209 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 287 (424)
...+. +..+.+ |...|-+++|. ..++.+|+.++.|..+|+|..+... ..+.+|...|..++|++++.
T Consensus 247 ~~~k~------~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkws~d~~- 314 (484)
T KOG0305|consen 247 KEQKK------TRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKWSPDGN- 314 (484)
T ss_pred hhccc------cccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEECCCCC-
Confidence 87644 344455 89999999998 3467899999999999999877522 24778999999999999998
Q ss_pred EEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCeEEEeeCCCCCcccCCCCcCCCCCe
Q 014433 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL--GRRLMVWDLSRIDEEQTPEDAEDGPPE 365 (424)
Q Consensus 288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~ 365 (424)
.||+|+.|+.+.|||... ..++..+..|..+|..++|+|..+.+||+|+. |++|++||..++....
T Consensus 315 ~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----------- 382 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----------- 382 (484)
T ss_pred eeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-----------
Confidence 699999999999999976 68899999999999999999998889999864 9999999999764322
Q ss_pred eeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCC
Q 014433 366 LLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAE 406 (424)
Q Consensus 366 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~ 406 (424)
.. ...+.|.++.|++..+-++.+.| .++.|.||++.+
T Consensus 383 ---~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 383 ---SV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ---cc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 22 22456999999999875665554 577899999976
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.6e-23 Score=170.92 Aligned_cols=244 Identities=17% Similarity=0.241 Sum_probs=186.1
Q ss_pred cCCceeEEEecCCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 124 HDGEVNRARYMPQNPFLIATKTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
+.-.|..++|-..... +..++. |.+|+..++.. .+-++-+.||...|++|+.+|-+. .+++++.|+
T Consensus 55 kkyG~~~~~Fth~~~~-~i~sStk~d~tIryLsl~d----------NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~ 122 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSNT-VIHSSTKEDDTIRYLSLHD----------NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDK 122 (311)
T ss_pred ccccccEEEEecCCce-EEEccCCCCCceEEEEeec----------CceEEEcCCCCceEEEEEecCCCC-eEEecccCC
Confidence 3346777777665543 333444 78999999987 566888999999999999999886 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec---cCCCeeE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA---HQSEVNC 278 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~ 278 (424)
+|++||++..++.. .+ +...-..++|.|.|- +||++.....|++||+|.-. ..|...+.- .....+.
T Consensus 123 tvrLWDlR~~~cqg------~l--~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~d-kgPF~tf~i~~~~~~ew~~ 192 (311)
T KOG1446|consen 123 TVRLWDLRVKKCQG------LL--NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFD-KGPFTTFSITDNDEAEWTD 192 (311)
T ss_pred eEEeeEecCCCCce------EE--ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccC-CCCceeEccCCCCccceee
Confidence 99999998664422 12 223344678999984 77788777799999999754 234444433 3667899
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCE---EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEV---FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v---~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|.|+|+|++ |+.+...+.+++.|.-. +..+.++..+...- .+.+|+|+++ ++++|+.||+|.+|+++++.
T Consensus 193 l~FS~dGK~-iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~---- 265 (311)
T KOG1446|consen 193 LEFSPDGKS-ILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGK---- 265 (311)
T ss_pred eEEcCCCCE-EEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCc----
Confidence 999999996 55667788999999988 67888887765433 6889999996 78899999999999998763
Q ss_pred CCCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 356 PEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.+..+.+ +..++..+.|+|.-. +++|+ +..+.+|=+....+
T Consensus 266 ----------~v~~~~~~~~~~~~~~~fnP~~~-mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 266 ----------KVAVLRGPNGGPVSCVRFNPRYA-MFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred ----------EeeEecCCCCCCccccccCCcee-eeeec--CceEEEEecccccc
Confidence 3445555 688899999999876 56664 56799998775544
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=197.73 Aligned_cols=221 Identities=17% Similarity=0.346 Sum_probs=173.7
Q ss_pred CcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
....+.+|+..|.++++.|.|. .|++|+.|..|++||+...... ..++.+.... ...|++++|++.+..+| +.+.
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E--~h~i~sl~ys~Tg~~iL-vvsg 234 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE--THQINSLQYSVTGDQIL-VVSG 234 (641)
T ss_pred ceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCccc--ccccceeeecCCCCeEE-EEec
Confidence 3456888999999999999998 7999999999999999765321 2233333333 34799999999998776 5666
Q ss_pred CCeEEEEEcCCCCC---------CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-----
Q 014433 249 DQYLLIWDLRTPSV---------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD----- 314 (424)
Q Consensus 249 dg~i~i~d~~~~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~----- 314 (424)
....+|+|-..... +..+...++|...++|.+|+|..+..|+|++.||+++|||+.+....+..+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 78899998754321 1223445789999999999999998999999999999999998665555554
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC--CcceEEeCCCCCcEEEE
Q 014433 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS--KISDFSWNPCEDWVISS 392 (424)
Q Consensus 315 ~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s 392 (424)
+..-+++.++|+|++. ++|+|+.||.|.+|+...... ...+..-..|.. .|+++.|+++|+ .|+|
T Consensus 315 g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlS 381 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISFSYDGN-YLLS 381 (641)
T ss_pred CcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEeccccc-hhhh
Confidence 2345789999999997 699999999999999865421 133445567766 899999999999 5889
Q ss_pred EeCCCcEEEEecCCc
Q 014433 393 VAEDNILQIWQMAEN 407 (424)
Q Consensus 393 ~~~dg~i~vw~~~~~ 407 (424)
-|.|+++++||+...
T Consensus 382 Rg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCCCceeeeecccc
Confidence 999999999999764
No 116
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=198.51 Aligned_cols=269 Identities=16% Similarity=0.326 Sum_probs=195.6
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
++...+.|.+.|..+.|.| +..+|++++.|.++++||+.. ....-...+.+|...|.+++|.|.++..|++
T Consensus 92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~--------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT--------SRLVGGRLNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc--------ceeecceeecccccccchhhhccCCCcceee
Confidence 3456678999999999999 777999999999999999987 2233333588999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCC--------------C---cc----cceeeeecCCccEee---EEEecCCCcEEEEEeC-CCe
Q 014433 197 GSDDAQICLWDINAAPKN--------------K---SL----EAMQIFKVHEGVVED---VAWHLRHEYLFGSVGD-DQY 251 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~--------------~---~~----~~~~~~~~~~~~v~~---~~~~~~~~~~~~s~~~-dg~ 251 (424)
|+.||.|.|||++..... . .. +.+.....+...|.+ +.+..|.. .||+++. |+.
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~ 241 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADST 241 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcc
Confidence 999999999999765311 0 00 111222334444444 44445554 4566666 999
Q ss_pred EEEEEcCCCCCCC---Ce--eeeecc---CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCC--E
Q 014433 252 LLIWDLRTPSVSK---PV--QSVVAH---QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEE--V 320 (424)
Q Consensus 252 i~i~d~~~~~~~~---~~--~~~~~~---~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~--v 320 (424)
|+|||+|...... +. ..+..| .-.+.++..+..|.+++|++. |+.|++|+++... .++..+.++... -
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~ 320 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFY 320 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceee
Confidence 9999999765321 11 111222 346788888888998777766 9999999998754 355555554332 2
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 400 (424)
..-..+|++. ++++|+.|....||.+.... .....+.||.-.|+.++|.|....=++++++|..++
T Consensus 321 vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e-------------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 321 VKSELSPDDC-SLLSGSSDEQAYIWVVSSPE-------------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred eeeecCCCCc-eEeccCCCcceeeeeecCcc-------------CChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 2334678885 79999999999999998753 334456799999999999986544578889999999
Q ss_pred EEecCCccCC
Q 014433 401 IWQMAENIYH 410 (424)
Q Consensus 401 vw~~~~~~~~ 410 (424)
||++..++.+
T Consensus 387 iW~l~~~l~e 396 (720)
T KOG0321|consen 387 IWRLSNGLEE 396 (720)
T ss_pred EEeccCchhh
Confidence 9999666443
No 117
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.6e-26 Score=218.38 Aligned_cols=261 Identities=26% Similarity=0.398 Sum_probs=202.6
Q ss_pred EEEecCCCCcEEEEEeC----------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc---eEEE
Q 014433 130 RARYMPQNPFLIATKTV----------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG---HLLS 196 (424)
Q Consensus 130 ~~~~~p~~~~~latg~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~s 196 (424)
.++|+|.+..++|+|.. +.++-||.+....... ..++...+. -....+.|+|.+.+.. +|+.
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~----dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS----DLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc----ccccccccc-ccccceeeeecccCCCccceeec
Confidence 47899988767777643 4556666655422111 112222222 3456789999988775 5899
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
|..||.|.+||...-........+.....|.+.|..+.|++...+++|+|+.||.|.|||+...+...... .....+.|
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI 164 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEI 164 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccc
Confidence 99999999999987533455556777888999999999999999999999999999999999865421111 22356789
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC--CEEEEEEcCCCCcEEEEEECCC---eEEEeeCCCCC
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE--EVFQVGWNPKNETILASCCLGR---RLMVWDLSRID 351 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~l~s~~~dg---~i~iwd~~~~~ 351 (424)
.+++|+..-.++||+++.+|.+.|||+|. .+++..+..+.. .+..++|+|+...-+++++.|. .|.+||+|...
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 99999999999999999999999999998 577777766554 5789999999877777777754 59999998753
Q ss_pred cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
..+..+.+|...|.++.|++.+..+++|++.|+.|.+|+.+++.+-
T Consensus 244 -------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 244 -------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred -------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 4456668999999999999999668999999999999999997543
No 118
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=7.2e-25 Score=182.08 Aligned_cols=214 Identities=21% Similarity=0.345 Sum_probs=167.6
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
..+.....|.++|+++.|+|... +|++|+.|++|++||+.+. ..+..........+|.+|.|+|.|. +|+
T Consensus 163 PvIRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~--------saKrA~K~~qd~~~vrsiSfHPsGe-fll 232 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKT--------SAKRAFKVFQDTEPVRSISFHPSGE-FLL 232 (430)
T ss_pred ceEeehhhccCcccceeecchhh-eEEeccCCCeEEEEecccH--------HHHHHHHHhhccceeeeEeecCCCc-eEE
Confidence 44556678999999999999775 9999999999999999872 2222223333567899999999998 799
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-C
Q 014433 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-S 274 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~ 274 (424)
.|....++++||+++.++-... ..-..|.+.|+++.+++.++ +.++++.||.|++||--++++...+. .+|. .
T Consensus 233 vgTdHp~~rlYdv~T~Qcfvsa---nPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gs 306 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQCFVSA---NPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGS 306 (430)
T ss_pred EecCCCceeEEeccceeEeeec---CcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH--hhcCCc
Confidence 9999999999999987543221 12356999999999999986 77899999999999988776633332 3454 5
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-----------------------------------------
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF----------------------------------------- 313 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----------------------------------------- 313 (424)
.|++..|..++++ +++.+.|..+++|.+.+ ++++..+
T Consensus 307 evcSa~Ftkn~ky-iLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 307 EVCSAVFTKNGKY-ILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred eeeeEEEccCCeE-EeecCCcceeeeeeecC-CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence 7899999999985 77888999999999876 3322221
Q ss_pred --------cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 314 --------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 314 --------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
.+|++.+..+.-||.++ .+++|+.|-.+++|--+
T Consensus 385 adr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 385 ADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 25788889999999887 68899999999999654
No 119
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.93 E-value=4.6e-23 Score=193.12 Aligned_cols=281 Identities=19% Similarity=0.270 Sum_probs=212.7
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC-ceE
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHL 194 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l 194 (424)
......+.-+..|.+++|+|..++++|.|+.+|.|.+||+......+. .........|..+++.+.|..+.. .-|
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v~~vvW~~~~~~~~f 308 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPVTAVVWLQNEHNTEF 308 (555)
T ss_pred CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCeEEEEEeccCCCCce
Confidence 333445567789999999999999999999999999999998443321 111223446899999999976533 239
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeee------cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-C----
Q 014433 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-S---- 263 (424)
Q Consensus 195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~---- 263 (424)
++++.||.|..|+++.-............. .....+++++|.+..++.|+.|+..|.|.--+-..... .
T Consensus 309 ~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 309 FSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc
Confidence 999999999999887654321111111111 12347899999999999999999999998744332221 1
Q ss_pred CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM 343 (424)
Q Consensus 264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~ 343 (424)
+....+..|.++|+++.++|.+..+|++++ |.+++||.......|+..+..+...|++++|||..+.+|+++..||.|.
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 224456678999999999999987777777 9999999988447888889888888999999999999999999999999
Q ss_pred EeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCC
Q 014433 344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD 414 (424)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 414 (424)
|||+..... ..+....-+....+.+.|++.|+ +|++|...|.+.+|++..+......+
T Consensus 468 iWDLl~~~~------------~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~~l~~~~~~ 525 (555)
T KOG1587|consen 468 IWDLLQDDE------------EPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSESLAVPSPN 525 (555)
T ss_pred hhhhhcccc------------CCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCchhhccCcc
Confidence 999986532 22223333355677888999999 89999999999999999887766544
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.9e-26 Score=209.06 Aligned_cols=236 Identities=24% Similarity=0.374 Sum_probs=203.0
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
...|...|.++..-..+ ..+++|+.+-.+-+|.+.. ..++..+.+|..+|-+|.|++... +|++|+.+
T Consensus 24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k----------p~~i~S~~~hespIeSl~f~~~E~-Llaagsas 91 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK----------PNAITSLTGHESPIESLTFDTSER-LLAAGSAS 91 (825)
T ss_pred hhhhhhhhceeeeeccc-eeeccCCCceeeccccccC----------CchhheeeccCCcceeeecCcchh-hhcccccC
Confidence 34688899999885444 4899999999999999987 455667999999999999999776 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
|+|++||+.... .++.+.+|...+..+.|+|.+. ++|+|+.|+.+++||++...+ ...+.+|...+.++.
T Consensus 92 gtiK~wDleeAk------~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc---~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 92 GTIKVWDLEEAK------IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC---SHTYKSHTRVVDVLR 161 (825)
T ss_pred Cceeeeehhhhh------hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCc---eeeecCCcceeEEEe
Confidence 999999998763 3556778999999999999987 458999999999999997554 778888999999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
|+|+|. +++.|+.|.+++|||++. ++.+..|..|.+.+.++.|+|.. .++++|+.|+++++||+++.
T Consensus 162 lsP~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletf---------- 228 (825)
T KOG0267|consen 162 LSPDGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETF---------- 228 (825)
T ss_pred ecCCCc-eeeccCCcceeeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeecccee----------
Confidence 999998 599999999999999998 78999999999999999999987 68999999999999999864
Q ss_pred CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED 396 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 396 (424)
+++-........|.+.+|+|++. .+.+|...
T Consensus 229 ----e~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 229 ----EVISSGKPETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred ----EEeeccCCccCCceeeeecCCce-eeecCchh
Confidence 44555555567799999999998 56665543
No 121
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=5e-24 Score=173.61 Aligned_cols=209 Identities=19% Similarity=0.241 Sum_probs=178.3
Q ss_pred EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 252 (424)
.+++|..+++.+.++.+|. +|++|+.|.+..+|--..+ +.+..+.+|.+.|+++..+.+...+ ++|+.|.++
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nG------erlGty~GHtGavW~~Did~~s~~l-iTGSAD~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNG------ERLGTYDGHTGAVWCCDIDWDSKHL-ITGSADQTA 76 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCC------ceeeeecCCCceEEEEEecCCccee-eecccccee
Confidence 4789999999999999998 8999999999999987666 3467789999999999999888765 599999999
Q ss_pred EEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe----CCCcEEEEECCCC------CCcceEecCCCCCEEE
Q 014433 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS----TDKTVKLFDLRKI------STALHTFDSHKEEVFQ 322 (424)
Q Consensus 253 ~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~----~dg~i~iwd~~~~------~~~~~~~~~h~~~v~~ 322 (424)
++||+.++++ +..++ ...+|..+.|++.|..++++.. ..+.|.++|++.. ..|...+..+.+.++.
T Consensus 77 kLWDv~tGk~---la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 77 KLWDVETGKQ---LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred EEEEcCCCcE---EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 9999999886 55443 4788999999998875444422 2468999999942 4678888889999999
Q ss_pred EEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 402 (424)
+.|.|-++ +|++|..||.|.+||++++. +++.....|...|++++++++.. ++++++.|.+.++|
T Consensus 153 a~Wg~l~~-~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 153 ALWGPLGE-TIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV 217 (327)
T ss_pred eeecccCC-EEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence 99999996 79999999999999999864 55566677888999999999999 69999999999999
Q ss_pred ecCCcc
Q 014433 403 QMAENI 408 (424)
Q Consensus 403 ~~~~~~ 408 (424)
|+.+-.
T Consensus 218 D~~tl~ 223 (327)
T KOG0643|consen 218 DVRTLE 223 (327)
T ss_pred ecccee
Confidence 998754
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.8e-23 Score=162.52 Aligned_cols=225 Identities=24% Similarity=0.364 Sum_probs=173.2
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC------------------------------
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------------------ 163 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~------------------------------ 163 (424)
+.+...+...|.+.|+|.+|+|.|. +||+|+.|.+|++..++.......
T Consensus 78 p~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 78 PSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 3556666667899999999999997 999999999999977654211100
Q ss_pred ------------CCCCCCCcEEEecCCCceeEE-EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec-CCcc
Q 014433 164 ------------LDGACSPDLRLRGHSTEGYGL-SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGV 229 (424)
Q Consensus 164 ------------~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~ 229 (424)
.-+.......+.+|.+-|.++ .|+ +. ++++|+.|.+|++||++-......+..-..-.+ ..+.
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 012334456677888888776 454 44 899999999999999987654433321110001 2367
Q ss_pred EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC---
Q 014433 230 VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--- 306 (424)
Q Consensus 230 v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~--- 306 (424)
|.+++..|.|+ ++++|-.|....+||+|.+.. ++.+..|...|.|+.|+|. .+++++++.|-.|++-|+...
T Consensus 234 vaav~vdpsgr-ll~sg~~dssc~lydirg~r~---iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred eEEEEECCCcc-eeeeccCCCceEEEEeeCCce---eeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccchhh
Confidence 99999999986 778999999999999999774 8888999999999999994 557999999999999998741
Q ss_pred CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 307 STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 307 ~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
.-++.....|+..+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 235556677999999999999884 57799999999999764
No 123
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.93 E-value=1.2e-23 Score=173.41 Aligned_cols=273 Identities=18% Similarity=0.309 Sum_probs=207.6
Q ss_pred cEEEEEEeccCCceeEEEec--CCCCcEEEEEeC----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC
Q 014433 115 KVQIIQQINHDGEVNRARYM--PQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK 188 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~~~~~--p~~~~~latg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 188 (424)
+.+.+....-+-.++++.|+ |+.+..||.|+. .+.|.|-.+.....+ ...... ..|.-+++.+.|.|
T Consensus 34 r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e------~~~~a~-fd~~YP~tK~~wiP 106 (364)
T KOG0290|consen 34 RRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE------LVEDAN-FDHPYPVTKLMWIP 106 (364)
T ss_pred ccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc------eeccCC-CCCCCCccceEecC
Confidence 33444556667788899998 455668999874 467888777652211 111112 46899999999999
Q ss_pred CCC----ceEEEEeCCCcEEEEeCCCCCCCCcccc---eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433 189 FKE----GHLLSGSDDAQICLWDINAAPKNKSLEA---MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 189 ~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
+.. .+||+++ -.+++|.+........... ...-..+..++++..|+.-.++++.+.+-|-+..|||+.++.
T Consensus 107 d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~ 184 (364)
T KOG0290|consen 107 DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV 184 (364)
T ss_pred CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc
Confidence 863 3466554 4899999975322111111 111223567999999999999999999999999999999874
Q ss_pred CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC--CCCEEEEEEcCCCCcEEEEEECC
Q 014433 262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 262 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
.......+.+|...|..|+|...+..+||+.+.||+|++||+|........+... ..+...++|+++..+++|+-..|
T Consensus 185 ~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 185 SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD 264 (364)
T ss_pred ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence 3223456678999999999999888899999999999999999865544444432 46889999999998899887765
Q ss_pred C-eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 340 R-RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 340 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+ .|.|.|++.. ...+..+++|.+.|++++|.|..+..|+|+|+|..+.+||+.....
T Consensus 265 S~~V~iLDiR~P-------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 265 SNKVVILDIRVP-------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CceEEEEEecCC-------------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 4 5999999973 4678889999999999999999888999999999999999987655
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9e-24 Score=169.97 Aligned_cols=219 Identities=19% Similarity=0.303 Sum_probs=175.0
Q ss_pred EEEEEeccCCceeEEEecC--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc-e
Q 014433 117 QIIQQINHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG-H 193 (424)
Q Consensus 117 ~~~~~~~h~~~v~~~~~~p--~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~ 193 (424)
.+....+|+++|..++|.. .|. +||+++.||.|.||.-.. +.+........|...|++++|.|.+-+ +
T Consensus 48 ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~--------g~w~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEEN--------GRWTKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred eeeEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCC--------CchhhhhhhhhhcccceeecccccccceE
Confidence 3455668999999999965 564 999999999999999887 556777778889999999999998654 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC---C----------CcEEEEEeCCCeEEEEEcCCC
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---H----------EYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~----------~~~~~s~~~dg~i~i~d~~~~ 260 (424)
|++++.||.|.|.+.+.... ....+....|.-.|++++|.|. + ...|++|+.|..|+||+....
T Consensus 119 LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 88899999999999876521 1223445679999999999987 3 134789999999999999886
Q ss_pred CCCCCeeeeeccCCCeeEEEecCCC---CeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433 261 SVSKPVQSVVAHQSEVNCLAFNPFN---EWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~v~~~~~~---~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s 335 (424)
. ...-..+.+|.+-|+.++|.|.. ...||+++.||++.||-.+....+ ...+..-...+.++.||+.|. +|+.
T Consensus 196 ~-w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaV 273 (299)
T KOG1332|consen 196 S-WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAV 273 (299)
T ss_pred c-hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEE
Confidence 4 33344578999999999999964 457999999999999988753222 222333457899999999995 8999
Q ss_pred EECCCeEEEeeCCC
Q 014433 336 CCLGRRLMVWDLSR 349 (424)
Q Consensus 336 ~~~dg~i~iwd~~~ 349 (424)
++.|+.|.+|.-+.
T Consensus 274 s~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 274 SGGDNKVTLWKENV 287 (299)
T ss_pred ecCCcEEEEEEeCC
Confidence 99999999997654
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.7e-25 Score=187.43 Aligned_cols=214 Identities=24% Similarity=0.425 Sum_probs=176.0
Q ss_pred cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 250 (424)
+..+.+|...|.+++=+|.....+++|+.||.|++||+.+.. +...+..|.+.|..|++.. . -+++++.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~------~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE------CIRTFKAHEGLVRGICVTQ--T-SFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh------hhheeecccCceeeEEecc--c-ceEEecCCc
Confidence 345789999999999999875679999999999999998763 4566788999999999986 2 345899999
Q ss_pred eEEEEEcCCCC-----------------------------------CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC
Q 014433 251 YLLIWDLRTPS-----------------------------------VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 251 ~i~i~d~~~~~-----------------------------------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d 295 (424)
+|+.|-+..+. ...|+..+.-....|.++.|+|....+|++++.|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 99999743210 0124444444556788999999988899999999
Q ss_pred CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC
Q 014433 296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 375 (424)
+.|.|||+|. ..|++.+.. ...-+.|+|+|.. ..+++++.|..++.||++... ..+..+.+|.+
T Consensus 210 rsIvLyD~R~-~~Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-------------~p~~v~~dhvs 273 (433)
T KOG0268|consen 210 RSIVLYDLRQ-ASPLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-------------RPLNVHKDHVS 273 (433)
T ss_pred CceEEEeccc-CCccceeee-eccccceecCccc-cceeeccccccceehhhhhhc-------------ccchhhcccce
Confidence 9999999998 677766654 5567889999965 579999999999999999865 56778899999
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
.|.+++|+|.|+ -+++||.|.+|+||....+--+
T Consensus 274 AV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 274 AVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred eEEEeccCCCcc-hhccccccceEEEeecCCCcch
Confidence 999999999999 6999999999999999877433
No 126
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.9e-24 Score=194.75 Aligned_cols=255 Identities=20% Similarity=0.271 Sum_probs=203.8
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEe-cCCCCceEEEEe
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW-SKFKEGHLLSGS 198 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~ 198 (424)
+...|.+-|+.+....++. -|++++.|-+|++|+.... ......++..|..-|.||+. .++.. ++|+|+
T Consensus 68 sme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~--------~~~c~stir~H~DYVkcla~~ak~~~-lvaSgG 137 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKD--------NTFCMSTIRTHKDYVKCLAYIAKNNE-LVASGG 137 (735)
T ss_pred hhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccC--------cchhHhhhhcccchheeeeecccCce-eEEecC
Confidence 3446899999999998886 6888999999999999872 22445678889999999999 55444 899999
Q ss_pred CCCcEEEEeCCCCCC--C---Ccccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 199 DDAQICLWDINAAPK--N---KSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~--~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
-|+.|.+||++++.. . ..+. ...+. ++..+|.+++.++.+ .+|++|+..+.+++||.++.+. +..+.+|
T Consensus 138 LD~~IflWDin~~~~~l~~s~n~~t-~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k---imkLrGH 212 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATLVASFNNVT-VNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK---IMKLRGH 212 (735)
T ss_pred CCccEEEEEccCcchhhhhhccccc-cccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc---eeeeecc
Confidence 999999999997733 1 1111 12222 788999999999987 5888999999999999999764 7778899
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
...|.++..+++|.. +++++.||+|++||++. .+++.++..|...|+++..+|+-. .+++|+.||.|..=|+++...
T Consensus 213 TdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred ccceEEEEEcCCCCe-EeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchh
Confidence 999999999999985 88999999999999998 899999999999999999999885 799999999999999987421
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
..+++. ...+|..+..+.+... +-++..|+.|+-|.....
T Consensus 290 -----------~tlick---~daPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 290 -----------STLICK---EDAPVLKLHLHEHDNS-VWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred -----------heEeec---CCCchhhhhhccccCC-ceeeeccccceecCCccc
Confidence 122222 2345666666654442 345567888888877544
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=174.45 Aligned_cols=247 Identities=19% Similarity=0.343 Sum_probs=185.5
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
...+.|.. ..|+.|++.|. +||+|+.+|.|.|||+.+ ..+...+.+|..+|.+++||++|. .|+++|
T Consensus 18 ~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T----------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS 84 (405)
T KOG1273|consen 18 THTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDT----------FRIARMLSAHVRPITSLCWSRDGR-KLLTSS 84 (405)
T ss_pred ceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccc----------cchhhhhhccccceeEEEecCCCC-Eeeeec
Confidence 34555555 88999999986 899999999999999998 456677889999999999999998 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEee----------------------------------------------
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED---------------------------------------------- 232 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~---------------------------------------------- 232 (424)
.|..|.+||+..+.....+. ..++|+.
T Consensus 85 ~D~si~lwDl~~gs~l~rir-------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIR-------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred CCceeEEEeccCCCceeEEE-------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 99999999999886432221 1111111
Q ss_pred -EEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--
Q 014433 233 -VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-- 308 (424)
Q Consensus 233 -~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-- 308 (424)
..|.+.|+++ .+|...|.+.++|..+.++ +..++... ..|..+.++..|+ .|+.-+.|+.|+.|+++....
T Consensus 158 ~~~fdr~g~yI-itGtsKGkllv~~a~t~e~---vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 158 HGVFDRRGKYI-ITGTSKGKLLVYDAETLEC---VASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred cccccCCCCEE-EEecCcceEEEEecchhee---eeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccC
Confidence 2245555544 4888899999999988654 55444444 6788899999888 588889999999999873211
Q ss_pred ------cceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcce
Q 014433 309 ------ALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISD 379 (424)
Q Consensus 309 ------~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~ 379 (424)
+.+.++. .+.+-.+++|+.+|.+++|+...-..++||.-..+ .++..+.|.. ....+
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--------------sLVKILhG~kgE~l~D 298 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--------------SLVKILHGTKGEELLD 298 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc--------------ceeeeecCCchhheee
Confidence 1122221 12345678999999866666666778999998876 6677777766 56788
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 380 FSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
+.|+|-.+ +|++. ..|.++||....
T Consensus 299 V~whp~rp-~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 299 VNWHPVRP-IIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccccccee-eeeec-cCCceEEEEeec
Confidence 99999988 67776 688999998764
No 128
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=174.95 Aligned_cols=206 Identities=19% Similarity=0.352 Sum_probs=171.1
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
+..+.|..-|.+++|+.+.. .|+||+.+..++|||++.. ..+...+.+|.+.|..+.|..... .|++++
T Consensus 94 lhsf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p---------~App~E~~ghtg~Ir~v~wc~eD~-~iLSSa 162 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRP---------KAPPKEISGHTGGIRTVLWCHEDK-CILSSA 162 (334)
T ss_pred hhhhhhhheeeeEEecccch-hhhccchHHHhhhhhccCC---------CCCchhhcCCCCcceeEEEeccCc-eEEeec
Confidence 44678999999999999775 7999999999999999873 234457889999999999998766 688889
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|++|++||.+++....++ . ...+|+++..+++|. ++ +....+.|.+||..+-.. +..+. -...|.+
T Consensus 163 dd~tVRLWD~rTgt~v~sL------~-~~s~VtSlEvs~dG~-il-Tia~gssV~Fwdaksf~~---lKs~k-~P~nV~S 229 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSL------E-FNSPVTSLEVSQDGR-IL-TIAYGSSVKFWDAKSFGL---LKSYK-MPCNVES 229 (334)
T ss_pred cCCceEEEEeccCcEEEEE------e-cCCCCcceeeccCCC-EE-EEecCceeEEeccccccc---eeecc-Ccccccc
Confidence 9999999999998554333 2 467899999999997 43 666788999999998553 43332 3567889
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
...+|+.. ++++|+.|..++.||..+ +..+..+ ++|-++|.|+.|+|+|. +.|+|+.||+|+||.+....
T Consensus 230 ASL~P~k~-~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 230 ASLHPKKE-FFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccCCCc-eEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCC
Confidence 99999886 799999999999999998 5666664 89999999999999997 79999999999999987653
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.9e-22 Score=181.29 Aligned_cols=251 Identities=11% Similarity=0.093 Sum_probs=172.8
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.+.+...+.+++|+|++..++++++.++.|++||... ......+..+. .+..++|+|++..++++++.+
T Consensus 26 ~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~----------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 26 TFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT----------GEVIGTLPSGP-DPELFALHPNGKILYIANEDD 94 (300)
T ss_pred EEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC----------CcEEEeccCCC-CccEEEECCCCCEEEEEcCCC
Confidence 3444455778999999886667888899999999876 22233344333 356789999988444556678
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
+.|++||+.+.. .+..+. +...+.+++|+|++..++ ++..+ ..+.+||.++... ..... ....+.++
T Consensus 95 ~~l~~~d~~~~~------~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~ 162 (300)
T TIGR03866 95 NLVTVIDIETRK------VLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEI---VDNVL-VDQRPRFA 162 (300)
T ss_pred CeEEEEECCCCe------EEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeE---EEEEE-cCCCccEE
Confidence 999999997642 222232 234568899999987554 55555 4577889877543 22222 23456789
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
+|+|++..+++++..++.|++||+++ ++.+..+..+. .....++|+|+++.++++.+.++.+.+||+.+..
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~- 240 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE- 240 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-
Confidence 99999986656666799999999997 45555443221 1235689999998656666667789999997642
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
+.... .+...+.+++|+|++++++++.+.+|.|++||+.++.+.
T Consensus 241 -------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 241 -------------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred -------------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 22222 123468899999999954444567999999999988653
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=181.15 Aligned_cols=247 Identities=17% Similarity=0.252 Sum_probs=191.8
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 218 (424)
+++++-.....+.+|.+.+. .......--.++|.+++-+|.|. +|+.|...|.|++|.+.++.
T Consensus 52 yllsaq~~rp~l~vw~i~k~----------~~~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~------ 114 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKK----------DQVVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGI------ 114 (476)
T ss_pred heeeecccCccccccccCch----------hhhhhhcccccceeeeecCCCce-EEEeecccCcEEEEEecccc------
Confidence 44555455568999999872 11112223567899999999887 67777799999999999884
Q ss_pred ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC------CCCCCCeeeeeccCCCeeEEEecCC--CCeEEE
Q 014433 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT------PSVSKPVQSVVAHQSEVNCLAFNPF--NEWILA 290 (424)
Q Consensus 219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~l~ 290 (424)
.+..+.+|-..|+++.|+.++.++| +|+.||.|.+|++-. ....+++..+..|.-+|+.+...+- .. .++
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~ii-TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~ 192 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHII-TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA-RLY 192 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEE-ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc-eEE
Confidence 4555678999999999999998654 999999999998742 1235788899999999999987664 33 589
Q ss_pred EEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC--CCCcCCCCCeeeE
Q 014433 291 TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT--PEDAEDGPPELLF 368 (424)
Q Consensus 291 tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~ 368 (424)
|++.|.++++||+.. +..+.++.. ...+.+++.+|.+. .++.|+.+|.|.+.++........ ...........+.
T Consensus 193 TaS~D~t~k~wdlS~-g~LLlti~f-p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSL-GVLLLTITF-PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EecCCceEEEEEecc-ceeeEEEec-CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 999999999999998 677777664 67899999999885 789999999999998876542111 0000011224466
Q ss_pred EEcCCCC--CcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 369 IHGGHTS--KISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 369 ~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
.+.||.+ .|++++.+-||. +|++|+.||.|+|||+....
T Consensus 270 ~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHH
Confidence 6788988 999999999999 89999999999999997754
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=191.18 Aligned_cols=245 Identities=19% Similarity=0.331 Sum_probs=195.0
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
+..|.+.-+.|+|.|+|. +|++++.||.|++|+.......+. .+.-+...|.+++-.. ++|++|+.+
T Consensus 9 Ryaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~---------ti~~~g~~v~~ia~~s---~~f~~~s~~ 75 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE---------TIDISGELVSSIACYS---NHFLTGSEQ 75 (933)
T ss_pred hhhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc---------hhhccCceeEEEeecc---cceEEeecc
Confidence 457888999999999998 899999999999999887432221 1222777788887643 379999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
++|.+|.+..+.... .+....-++++++++-+|. .+|.|+.|-.|++.++..... ...+.+|.++|.++.
T Consensus 76 ~tv~~y~fps~~~~~------iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDT------ILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLS 145 (933)
T ss_pred ceEEEeeCCCCCccc------eeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccch---heeecccCCceeeee
Confidence 999999998765432 2334567899999999886 567999999999999988664 667789999999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-------C-CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------H-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-------h-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
|+|.+. +||+.+.||.|++||+.+ +....++.+ . ...+..++|+|++.. |+..+.|+.|++|+......
T Consensus 146 ~~p~~~-fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 146 YDPKGN-FLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred EcCCCC-EEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCcee
Confidence 999998 799999999999999997 554444432 1 456788999999865 66777899999999987632
Q ss_pred ccCCCCcCCCCCeeeEEEc--CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 353 EQTPEDAEDGPPELLFIHG--GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
.+.+. .+...+..+.|+|+|.| ||+++.||.|.|||+.+
T Consensus 223 --------------~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 223 --------------QFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred --------------heeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 33332 23445899999999995 89999999999999997
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.8e-24 Score=187.81 Aligned_cols=254 Identities=21% Similarity=0.326 Sum_probs=201.2
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceeEEEecCCCCce
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~ 193 (424)
.+-+..+.|.+-|.+++.+...+ .+.||+ .|.|+|||+....+. .++..+.. ...-|.++...|++. .
T Consensus 410 arq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k-------~PvsqLdcl~rdnyiRSckL~pdgr-t 479 (705)
T KOG0639|consen 410 ARQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNK-------SPVSQLDCLNRDNYIRSCKLLPDGR-T 479 (705)
T ss_pred HHhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCC-------CccccccccCcccceeeeEecCCCc-e
Confidence 34556778999999999998765 788877 589999999875332 33333332 345688999999998 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
|++|+.-.++.|||+...... ....+....-.+.+++.+|+.+..| +++.||.|.|||+++... +..+++|.
T Consensus 480 LivGGeastlsiWDLAapTpr----ikaeltssapaCyALa~spDakvcF-sccsdGnI~vwDLhnq~~---VrqfqGht 551 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPR----IKAELTSSAPACYALAISPDAKVCF-SCCSDGNIAVWDLHNQTL---VRQFQGHT 551 (705)
T ss_pred EEeccccceeeeeeccCCCcc----hhhhcCCcchhhhhhhcCCccceee-eeccCCcEEEEEccccee---eecccCCC
Confidence 899999999999999875431 1112222334677899999987666 788899999999998664 88899999
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
..+.||..+++|.+ |.||+-|.+|+.||+|. +..+..... .+.|.++..+|.++ .|+.|-..+.+.|-..+..
T Consensus 552 DGascIdis~dGtk-lWTGGlDntvRcWDlre-grqlqqhdF-~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--- 624 (705)
T KOG0639|consen 552 DGASCIDISKDGTK-LWTGGLDNTVRCWDLRE-GRQLQQHDF-SSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--- 624 (705)
T ss_pred CCceeEEecCCCce-eecCCCccceeehhhhh-hhhhhhhhh-hhhheecccCCCcc-ceeeecccCcEEEEecCCc---
Confidence 99999999999985 99999999999999998 444444432 57899999999997 6899999998888777652
Q ss_pred cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
-.+.+.-|.+.|.++.|.+.|+| +++.+.|+.+..|+.--+
T Consensus 625 ------------~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 625 ------------EKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ------------cceeecccccEEEEEEecccCce-eeecCchhhhhhccCccc
Confidence 23445668899999999999995 888899999999998766
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.1e-22 Score=169.26 Aligned_cols=235 Identities=17% Similarity=0.207 Sum_probs=178.4
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+...+.|..++.+++|.+.. -+++|+.||.|+.+|+.. .....+..|...|.+|.+++-.. .+++|
T Consensus 47 l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~-----------~~~~~igth~~~i~ci~~~~~~~-~vIsg 112 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNT-----------GNEDQIGTHDEGIRCIEYSYEVG-CVISG 112 (323)
T ss_pred hhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecC-----------CcceeeccCCCceEEEEeeccCC-eEEEc
Confidence 45567899999999999855 589999999999999997 33456778999999999998554 79999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
+.|++|++||.+....... +. ....|.++... +. .|++|+.+..+.+||+|+..... ...-...+-.++
T Consensus 113 sWD~~ik~wD~R~~~~~~~------~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~-q~reS~lkyqtR 181 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGT------FD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPF-QRRESSLKYQTR 181 (323)
T ss_pred ccCccEEEEeccccccccc------cc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchh-hhccccceeEEE
Confidence 9999999999986422222 11 23478888765 33 45688999999999999866421 111123455789
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCC---CCcceEecCCC---------CCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKI---STALHTFDSHK---------EEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~~h~---------~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
||++.|++.- +++++-||.|.+=.+... ......|+.|. .+|++++|+|-.. .||||+.||.|.+|
T Consensus 182 ~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 182 CVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIW 259 (323)
T ss_pred EEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEc
Confidence 9999997774 788999999888666542 13345566664 3799999999875 69999999999999
Q ss_pred eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA 394 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 394 (424)
|+.+.+ .+..+......|..++|+.+|. +||.++
T Consensus 260 d~~~rK--------------rl~q~~~~~~SI~slsfs~dG~-~LAia~ 293 (323)
T KOG1036|consen 260 DLFNRK--------------RLKQLAKYETSISSLSFSMDGS-LLAIAS 293 (323)
T ss_pred cCcchh--------------hhhhccCCCCceEEEEeccCCC-eEEEEe
Confidence 998753 2444445556799999999999 677765
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.7e-25 Score=203.59 Aligned_cols=225 Identities=23% Similarity=0.454 Sum_probs=191.7
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 219 (424)
+++.....-.+++|+... +..|...+.++..-..+. .+++|+.|-.+.+|.+.... +
T Consensus 6 ~~m~~~~~t~Lr~~~~~~----------------~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~------~ 62 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE----------------FVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPN------A 62 (825)
T ss_pred ccceeeeeeccccccchh----------------hhhhhhhhceeeeeccce-eeccCCCceeeccccccCCc------h
Confidence 344444555677887665 446888888888755455 79999999999999986552 3
Q ss_pred eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~ 299 (424)
+..+.+|..+|.++.|++... ++++|+.+|+|++||+...+. ++++.+|...+.+++|+|.+. ++|.|+.|+.++
T Consensus 63 i~S~~~hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~---vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~ 137 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKI---VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLK 137 (825)
T ss_pred hheeeccCCcceeeecCcchh-hhcccccCCceeeeehhhhhh---hhhhhccccCcceeeeccceE-Eeccccccccce
Confidence 445789999999999999864 788999999999999998664 778889999999999999998 479999999999
Q ss_pred EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD 379 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 379 (424)
+||.|. ..+.+.+.+|...|..++|+|+|. +++.++.|..++|||+..+ .++..+.+|...+..
T Consensus 138 iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~ag--------------k~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 138 IWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAG--------------KLSKEFKSHEGKVQS 201 (825)
T ss_pred ehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccc--------------ccccccccccccccc
Confidence 999997 678999999999999999999996 7999999999999999875 667778899999999
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 380 FSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+.|+|..- ++++||.|+++++||+.+-.+
T Consensus 202 le~hp~e~-Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 202 LEFHPLEV-LLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred cccCchhh-hhccCCCCceeeeeccceeEE
Confidence 99999876 899999999999999996544
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=6e-23 Score=191.19 Aligned_cols=264 Identities=17% Similarity=0.282 Sum_probs=206.3
Q ss_pred EEEEeccC-CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceeEEEecCCCCceEE
Q 014433 118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 118 ~~~~~~h~-~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~ 195 (424)
++..+.|. +.|+.++|.-||..++|+|+..|.+.+||++. .+....+ ..|.+.|..+.|.|..+ .++
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~----------kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ 304 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK----------KKLINVTRNAHYGSVTGATFLPGEP-VLV 304 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC----------CeeeeeeeccccCCcccceecCCCc-eEe
Confidence 45567786 99999999999999999999999999999997 2223333 36888888888888655 788
Q ss_pred EEeCCCcEEEEeCCCCCCCCc---------------------------------c-------------------------
Q 014433 196 SGSDDAQICLWDINAAPKNKS---------------------------------L------------------------- 217 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~~~---------------------------------~------------------------- 217 (424)
+++.|..+++|=.+++..... +
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 888888888875542211000 0
Q ss_pred -------------------------------------cce------------ee-----eecCCccEeeEEEecCCCcEE
Q 014433 218 -------------------------------------EAM------------QI-----FKVHEGVVEDVAWHLRHEYLF 243 (424)
Q Consensus 218 -------------------------------------~~~------------~~-----~~~~~~~v~~~~~~~~~~~~~ 243 (424)
... .. ++.....+++++.++.|+..|
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~ 464 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVF 464 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEE
Confidence 000 00 111224678888888887554
Q ss_pred EEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEE
Q 014433 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV 323 (424)
Q Consensus 244 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~ 323 (424)
.|+..|.|-+|++.++-.......-.+|..+|+.++.+..++ ++++++.+|.+++||..+ +.++..+.. ...+..+
T Consensus 465 -IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~-k~l~~~l~l-~~~~~~i 540 (910)
T KOG1539|consen 465 -IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKK-KVLKKSLRL-GSSITGI 540 (910)
T ss_pred -EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCC-cceeeeecc-CCCccee
Confidence 888999999999999875444433468999999999998887 799999999999999998 566666664 5678888
Q ss_pred EEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
..+.... ++|.+..|-.|+++|+.+. ..++.+.||.+.|++++|||+|+| |++++.|++|++||
T Consensus 541 v~hr~s~-l~a~~~ddf~I~vvD~~t~--------------kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wD 604 (910)
T KOG1539|consen 541 VYHRVSD-LLAIALDDFSIRVVDVVTR--------------KVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWD 604 (910)
T ss_pred eeeehhh-hhhhhcCceeEEEEEchhh--------------hhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEe
Confidence 8887774 7999999999999999874 567788999999999999999996 88889999999999
Q ss_pred cCCccCCCC
Q 014433 404 MAENIYHDE 412 (424)
Q Consensus 404 ~~~~~~~~~ 412 (424)
+.++.+-+.
T Consensus 605 lpt~~lID~ 613 (910)
T KOG1539|consen 605 LPTGTLIDG 613 (910)
T ss_pred ccCcceeee
Confidence 999876543
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=187.93 Aligned_cols=256 Identities=18% Similarity=0.289 Sum_probs=181.9
Q ss_pred EEEecC--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433 130 RARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 130 ~~~~~p--~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 207 (424)
+..|++ ...++||.+..+|.|.++|.....-.. +.........|...|..+.|.| +...|++++.|.++++||
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~----ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL----EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWD 128 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcch----hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeee
Confidence 355554 566799999999999999987632221 1122345667999999999999 776899999999999999
Q ss_pred CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC------------------------
Q 014433 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------------ 263 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------------ 263 (424)
+++.... -...+.+|...|.+++|.|.++.+|++|+.||.|.|||+|.....
T Consensus 129 vk~s~l~----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 129 VKTSRLV----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eccceee----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9877442 233477899999999999999999999999999999999854310
Q ss_pred CCeeeeeccCCCeeE---EEecCCCCeEEEEEeC-CCcEEEEECCCCCC-----cc--eEecCC---CCCEEEEEEcCCC
Q 014433 264 KPVQSVVAHQSEVNC---LAFNPFNEWILATGST-DKTVKLFDLRKIST-----AL--HTFDSH---KEEVFQVGWNPKN 329 (424)
Q Consensus 264 ~~~~~~~~~~~~v~~---v~~~~~~~~~l~tg~~-dg~i~iwd~~~~~~-----~~--~~~~~h---~~~v~~~~~sp~~ 329 (424)
+.+....++...|.+ +.+..|.. .||+++. |+.|+|||+|+... +. ..+..| ...++++.....|
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 011122334444444 34445555 5777776 99999999997432 22 223333 3467888888888
Q ss_pred CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC--cceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK--ISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.+++|+|. |+.|++|++..... ..++.+.++... -..-..+|++. .|++|+.|...++|.++.-
T Consensus 284 t~L~AsCt-D~sIy~ynm~s~s~------------sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 284 TYLFASCT-DNSIYFYNMRSLSI------------SPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CeEEEEec-CCcEEEEeccccCc------------CchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCc
Confidence 76665555 99999999987542 333444444321 12234689999 5999999999999999875
Q ss_pred cC
Q 014433 408 IY 409 (424)
Q Consensus 408 ~~ 409 (424)
..
T Consensus 350 e~ 351 (720)
T KOG0321|consen 350 EA 351 (720)
T ss_pred cC
Confidence 43
No 137
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.2e-22 Score=166.82 Aligned_cols=239 Identities=15% Similarity=0.205 Sum_probs=181.0
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC-ceEEEE
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSG 197 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~ 197 (424)
.....|.++|.+++|+.+|. .+++|+.|+.+++||+.+ .....+..|.++|.++.|-+... ..|++|
T Consensus 66 ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S-----------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS-----------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred hhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC-----------CCeeeeeecccceeEEEEecCCCcceeEec
Confidence 34567999999999999996 788899999999999998 23567788999999999987433 268999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
|.|.+|+.||++.... +..+. -...+.++..- .+ +++++..++.|.+|+++.+........ ...+-.++
T Consensus 134 SWDKTlKfWD~R~~~p------v~t~~-LPeRvYa~Dv~--~p-m~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R 202 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNP------VATLQ-LPERVYAADVL--YP-MAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTR 202 (347)
T ss_pred ccccceeecccCCCCe------eeeee-ccceeeehhcc--Cc-eeEEEecCCcEEEEEcCCCcchhhhhc-Ccccceee
Confidence 9999999999986643 22222 34566666543 23 566888899999999987543111111 12344688
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCC-CCcceEecCCCC---------CEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSHKE---------EVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h~~---------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
||+..++... .|.|+-.|.+.|..+... ...-.+|+.|.. +|++|+|+|... .|+|++.||++.+||-
T Consensus 203 ~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 203 CVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK 280 (347)
T ss_pred EEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence 9999988884 799999999999988762 134456666652 589999999875 6999999999999998
Q ss_pred CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED 396 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 396 (424)
... ..+.....|..+|++.+|+.+|..+....|.|
T Consensus 281 dar--------------~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 281 DAR--------------TKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred hhh--------------hhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 764 33555677889999999999999655555544
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.7e-22 Score=166.67 Aligned_cols=272 Identities=15% Similarity=0.216 Sum_probs=185.6
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
...+|.+.|++++|+.+|+ .|||++.|+.|+||++..-..... +.+ ...-.-+-.+.+.|.|+-...++++-.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~-R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEH-----RCI-RQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred hhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhh-----hHh-hccccCCCceEEEECCCcceEEEEEcc
Confidence 3457999999999999997 799999999999999986222111 000 011111235789999998877888888
Q ss_pred CCcEEEEeCCCCCCCC-cc-----cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433 200 DAQICLWDINAAPKNK-SL-----EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~-~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
..++++|.+....... ++ .....-+.|...+..+-....+ .++++++.|..|.+|+++ ++. +..+....
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~---L~~idtnq 228 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQL---LQSIDTNQ 228 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cce---eeeecccc
Confidence 8899999876543221 11 1111123355566666655544 467799999999999999 443 55555556
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--C-----CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--S-----TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~--~-----~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
..-+..+.+|+|+ ++|+++..-.|++|.+--. + ..+..+.+|++.|..++|+++.. .+++.+.||+++|||
T Consensus 229 ~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 229 SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWD 306 (420)
T ss_pred ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEee
Confidence 6677788999998 5788888888999986321 1 34667889999999999999996 589999999999999
Q ss_pred CCCCCc----ccCC-------CCcCCCCCee--------eE--------EE------------cCCCCCcceEEeCCCCC
Q 014433 347 LSRIDE----EQTP-------EDAEDGPPEL--------LF--------IH------------GGHTSKISDFSWNPCED 387 (424)
Q Consensus 347 ~~~~~~----~~~~-------~~~~~~~~~~--------~~--------~~------------~~h~~~v~~~~~~~~~~ 387 (424)
+...-. +..+ ......|.++ +. .+ ..|...|.+++|+++|+
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK 386 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence 864311 1000 0000001000 00 00 13777899999999999
Q ss_pred cEEEEEeCCCcEEEEecCCc
Q 014433 388 WVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 388 ~~l~s~~~dg~i~vw~~~~~ 407 (424)
.++|+| |..+++..-..+
T Consensus 387 -~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 387 -YIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred -EEeeec-ceeeeeecCCCc
Confidence 478876 778888764433
No 139
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7e-23 Score=172.54 Aligned_cols=248 Identities=21% Similarity=0.356 Sum_probs=185.4
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC-CCceEEEEeCCCcEEEEeCCCCCCCCcc
Q 014433 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSL 217 (424)
Q Consensus 139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 217 (424)
..+|++.++|.|++||..+ ......++++...+..+.|... +++.+.+|+.||+|++||++......
T Consensus 41 ~~vav~lSngsv~lyd~~t----------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-- 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-- 108 (376)
T ss_pred eeEEEEecCCeEEEEeccc----------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--
Confidence 4799999999999999987 5567788999999999999875 66679999999999999999875532
Q ss_pred cceeeeecCC-ccEeeEEEecCCCcEEEEEe----CCCeEEEEEcCCCCCCCCeee-eeccCCCeeEEEecCCCCeEEEE
Q 014433 218 EAMQIFKVHE-GVVEDVAWHLRHEYLFGSVG----DDQYLLIWDLRTPSVSKPVQS-VVAHQSEVNCLAFNPFNEWILAT 291 (424)
Q Consensus 218 ~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~----~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~t 291 (424)
...+..++ .+..+++.+..+ +++++|. .+-.|.+||+|..+. ++.. ...|...|+++.|+|..+.+|++
T Consensus 109 --~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 109 --RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred --heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 22344444 456666665444 5777764 467899999998764 2332 35799999999999999999999
Q ss_pred EeCCCcEEEEECCCCC--CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC---------
Q 014433 292 GSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE--------- 360 (424)
Q Consensus 292 g~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------- 360 (424)
|+.||.|.|||+.... ..+.....|...|.++.|...+-.-+.+-+......+|+++.+.+......+.
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~ 263 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE 263 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence 9999999999998642 23444455788899999998873347778888899999999876543222110
Q ss_pred ----------------------C-CCCeee---------------EEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433 361 ----------------------D-GPPELL---------------FIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 361 ----------------------~-~~~~~~---------------~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 401 (424)
. .....+ ..+ .+|...|.++.|...+. ++.|||+||.+++
T Consensus 264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQA 342 (376)
T ss_pred hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEE
Confidence 0 000011 111 23666788888887777 8999999999999
Q ss_pred Eec
Q 014433 402 WQM 404 (424)
Q Consensus 402 w~~ 404 (424)
|..
T Consensus 343 Wk~ 345 (376)
T KOG1188|consen 343 WKV 345 (376)
T ss_pred Eec
Confidence 996
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=3.6e-23 Score=180.46 Aligned_cols=221 Identities=16% Similarity=0.250 Sum_probs=179.5
Q ss_pred CcEEEecCCCceeEEEecCCCC-ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 170 PDLRLRGHSTEGYGLSWSKFKE-GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
.....+-+...|++++|+|... .++++|+.-|.|-+||+.+... ....+..+..|..+|.+|.|+|.+...+.+.+.
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--ccCceEEeccCCccccceEecCCChhheeeecc
Confidence 3445667889999999999876 6899999999999999964322 223456678899999999999998888889999
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~ 328 (424)
||+|++-|+..... ..+.........+..+.|+..... ++.|..=|...+||+|..+.....+..|...|.+++++|.
T Consensus 256 DGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 256 DGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred Cceeeeeeecchhh-HHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 99999999987542 223333334556778889887775 5566666799999999987778888889999999999999
Q ss_pred CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
.+++|||++.|++++|||++......+ .+...-.|...|.++.|+|.+-. |+|.+.|+.|+|||.+
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 999999999999999999998654321 13344578889999999999884 8888999999999985
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1e-21 Score=173.44 Aligned_cols=240 Identities=16% Similarity=0.262 Sum_probs=187.7
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
..|.|++|.+++. ++||.++|.|.||+... .+.......|.+.|.+|+...+|. |++|+.|+.|..
T Consensus 247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~----------~~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~ 312 (626)
T KOG2106|consen 247 KFVLCVTFLENGD--VITGDSGGNILIWSKGT----------NRISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIIL 312 (626)
T ss_pred eEEEEEEEcCCCC--EEeecCCceEEEEeCCC----------ceEEeEeeecCCceEEEEEecCcc--EeecCccceEEe
Confidence 6899999999886 88999999999999876 344455559999999999998776 888999999999
Q ss_pred EeCCCCCCCCcc-----------------------------------cceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433 206 WDINAAPKNKSL-----------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (424)
Q Consensus 206 wd~~~~~~~~~~-----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 250 (424)
||-+-.+. ... .......+|....+.++.+|+.+ ++++++.|+
T Consensus 313 Wd~~y~k~-r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk 390 (626)
T KOG2106|consen 313 WDDNYRKL-RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDK 390 (626)
T ss_pred cccccccc-ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcc
Confidence 99332211 000 11223456888999999999876 456999999
Q ss_pred eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 330 (424)
.+++|+ ..+ +.- .+.-..++.|++|+|.| .+|.|+..|...+.|..+ ...+..... +.+++.++|+|+|.
T Consensus 391 ~v~lW~--~~k---~~w-t~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 391 HVRLWN--DHK---LEW-TKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred eEEEcc--CCc---eeE-EEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCC
Confidence 999999 222 122 22346789999999988 699999999999999998 455544444 89999999999996
Q ss_pred cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
+||.|+.|+.|+||.+..... .....-..|.++|+.+.|++|++ ++.+-+.|-.|..|...
T Consensus 461 -~lAvgs~d~~iyiy~Vs~~g~------------~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 461 -FLAVGSHDNHIYIYRVSANGR------------KYSRVGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWKPS 521 (626)
T ss_pred -EEEEecCCCeEEEEEECCCCc------------EEEEeeeecCceeEEeeecCCCc-eEEeccCceEEEEEccc
Confidence 899999999999999987543 22222223348899999999999 58888999999999443
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=6.5e-22 Score=165.52 Aligned_cols=250 Identities=18% Similarity=0.248 Sum_probs=185.0
Q ss_pred EEEEEEeccCCceeEEEecC------CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc---eeEEEe
Q 014433 116 VQIIQQINHDGEVNRARYMP------QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE---GYGLSW 186 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p------~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~ 186 (424)
.+..-+....+.|...+|-+ -...++|+.+.+.-|++||.-+ +..+.......|..+ ..+|+|
T Consensus 95 ~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaft--------G~lraSy~~ydh~de~taAhsL~F 166 (406)
T KOG2919|consen 95 KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFT--------GKLRASYRAYDHQDEYTAAHSLQF 166 (406)
T ss_pred cceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccc--------cccccchhhhhhHHhhhhheeEEe
Confidence 33444556677888888863 1345899999999999999988 333333333345543 468999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCCCCCCC-cccceee-eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433 187 SKFKEGHLLSGSDDAQICLWDINAAPKNK-SLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (424)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~ 264 (424)
+|+|. .|++| ....|+++|+....+.. ....+.. -.+..+-+.+++|+|....+++.|+....+-||.-....
T Consensus 167 s~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--- 241 (406)
T KOG2919|consen 167 SPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--- 241 (406)
T ss_pred cCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---
Confidence 99999 46655 45899999995433322 1111111 223467899999999998889999988888888766644
Q ss_pred CeeeeeccCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECCCCCCcceEecCCCC-CEEEEEE--cCCCCcEEEEEECCC
Q 014433 265 PVQSVVAHQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLRKISTALHTFDSHKE-EVFQVGW--NPKNETILASCCLGR 340 (424)
Q Consensus 265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~h~~-~v~~~~~--sp~~~~~l~s~~~dg 340 (424)
++..+.+|.+.|+.+.|+++|.. |.+|. .|-.|..||+|....++..+..|.. .=..|-| .|.++ +|++|+.||
T Consensus 242 pl~llggh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG 319 (406)
T KOG2919|consen 242 PLQLLGGHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDG 319 (406)
T ss_pred ceeeecccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCc
Confidence 68888899999999999999996 55555 5779999999998889888888765 3344444 57785 899999999
Q ss_pred eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA 394 (424)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 394 (424)
.|++||+.... .....+..|...++.++++|--+ ++++++
T Consensus 320 ~V~vwdlk~~g-------------n~~sv~~~~sd~vNgvslnP~mp-ilatss 359 (406)
T KOG2919|consen 320 SVRVWDLKDLG-------------NEVSVTGNYSDTVNGVSLNPIMP-ILATSS 359 (406)
T ss_pred cEEEEecCCCC-------------CcccccccccccccceecCcccc-eeeecc
Confidence 99999998743 22344567788899999999988 777765
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.4e-23 Score=181.54 Aligned_cols=214 Identities=16% Similarity=0.264 Sum_probs=180.2
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 218 (424)
.++++|+..+.|+|||+.. ......+++|...|+++.++-... +||+++..|.|.|..+.++.....+.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~----------kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA----------KLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred eeeeccCcCceeeehhhHH----------HHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcccccee
Confidence 4899999999999999986 345567889999999999998777 89999999999999998876543332
Q ss_pred ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i 298 (424)
......|.-+.|++..++++.+++.+|.|.+||+..... .......|..+...|+|+|.++.+|++.+.|..|
T Consensus 161 -----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 161 -----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred -----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCccceEEEecccceE
Confidence 122456779999999999999999999999999987553 2334467999999999999999999999999999
Q ss_pred EEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433 299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 299 ~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
.+||.+. ......+.. ..+.+.++|+++| .+|++|...|.|..||++... ..+.+...|...|+
T Consensus 234 ~~yD~~s-~~s~~~l~y-~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k-------------~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 234 NIYDIRS-QASTDRLTY-SHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK-------------APVAVRSAHDASVT 297 (673)
T ss_pred EEeeccc-ccccceeee-cCCcceeeecCCc-eEEEeecCCceEEEEecccCC-------------CCceEeeeccccee
Confidence 9999997 455545443 6789999999999 589999999999999999753 56777888999999
Q ss_pred eEEeCCCC
Q 014433 379 DFSWNPCE 386 (424)
Q Consensus 379 ~~~~~~~~ 386 (424)
+++|.|..
T Consensus 298 ~vafq~s~ 305 (673)
T KOG4378|consen 298 RVAFQPSP 305 (673)
T ss_pred EEEeeecc
Confidence 99998864
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1e-21 Score=171.56 Aligned_cols=248 Identities=17% Similarity=0.252 Sum_probs=188.8
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCCCceEEEEeCCCc
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
-..+|.+.+|.|+|...+++++.....+.||+.+ .....+..+.++. ..+.....+++++ +|+..+..|.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~--------ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~ 326 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET--------AKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGH 326 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccc--------cccccccCCCCcccchhheeEecCCCC-eEEEcccCce
Confidence 4568999999999987889999999999999987 3334444445554 3456677889888 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-CCCeeEEEe
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVNCLAF 281 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~v~~ 281 (424)
|.+....++....+ ++ ..+.|.+++|+.++..++ +++.+|.|.+||++...+ ++.+... .-.-++++.
T Consensus 327 I~lLhakT~eli~s------~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~---~~rf~D~G~v~gts~~~ 395 (514)
T KOG2055|consen 327 IHLLHAKTKELITS------FK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSC---LHRFVDDGSVHGTSLCI 395 (514)
T ss_pred EEeehhhhhhhhhe------ee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcce---EEEEeecCccceeeeee
Confidence 99998877644333 22 467899999999997666 566789999999999764 5555332 223467888
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-----CCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCeEEEeeCCCCCccc
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRK-----ISTALHTFDSHKEEVFQVGWNPKNETILASCCL--GRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~-----~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~i~iwd~~~~~~~~ 354 (424)
++++. +||+|+..|.|.|||..+ ..+|+..+..-...|++++|+|+.+ +||.+|. +..+++-.+.+.....
T Consensus 396 S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 396 SLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred cCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeec
Confidence 88888 699999999999999653 2467888877788999999999995 7887775 5678888876532211
Q ss_pred CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
++|.. ....+.|++++|+|.+. +++.|..+|.+.+|.+.
T Consensus 474 ------NfP~~-----n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 ------NFPTS-----NTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ------cCCCC-----CCcccceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence 11111 12345689999999998 69999999999999985
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=8.4e-23 Score=184.82 Aligned_cols=121 Identities=24% Similarity=0.435 Sum_probs=105.5
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
..|+.+.|+|.....||+++.||.|++|.+...+ .+-..+..|...|+++.|+|-...+|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3478888998877779999999999999987533 4567788999999999999987779999999999999999
Q ss_pred CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
++. .....+.||...|.+++|+|+|+ .+++.+.||+|+||+...+.-
T Consensus 708 ~~~--------------~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 708 ANA--------------KLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hhh--------------hhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCC
Confidence 986 34556789999999999999999 799999999999999987643
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=5.4e-22 Score=166.01 Aligned_cols=259 Identities=18% Similarity=0.350 Sum_probs=185.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC--CCCCCCCcEEEe-cCCCceeEEEecCC------CCceEEE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--LDGACSPDLRLR-GHSTEGYGLSWSKF------KEGHLLS 196 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~-~h~~~v~~l~~~~~------~~~~l~s 196 (424)
.-...+.|+|+|. .|.+-+.|..+++|++........ ..........++ .....|+..+|-+. ...++++
T Consensus 50 nf~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 3455789999998 566678899999999875321111 000111111222 13456888888532 2347999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCc---cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee---
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEG---VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV--- 270 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~--- 270 (424)
.+.+.-|++||.-+++...+.... .|.. ...+++|+|+|.++| ++....|++||+..+....+.....
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~y----dh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAY----DHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ccccCceeeeeccccccccchhhh----hhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcc
Confidence 999999999999988654443321 1322 356899999999876 4578999999994433223333322
Q ss_pred --ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 271 --AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 271 --~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
+..+.+.|++|+|....++|.|+...++-||.-.. ..|+..+.+|.+.|+.+.|.++|..++.-+-.|..|..||++
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 23678999999999888999999999999998776 788999999999999999999998644444448889999999
Q ss_pred CCCcccCCCCcCCCCCeeeEEEcCCCC-C--cceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 349 RIDEEQTPEDAEDGPPELLFIHGGHTS-K--ISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-~--v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
... ..+..+..|.. . -.-+...|+++ +|++|+.||.|++||+++
T Consensus 282 ~~~-------------~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 YSR-------------DPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hcc-------------chhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 854 44555556654 2 22355678899 799999999999999987
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.2e-22 Score=180.99 Aligned_cols=261 Identities=18% Similarity=0.291 Sum_probs=181.0
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
.-..+|.+.|.+|...|.|. .||+|+.||+|+||.+.+ ..++.++. ..+.|.+|+|+|.+...+++++
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~T----------gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIAT----------GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred eeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeec----------ceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 34458999999999999876 899999999999999998 45555554 4568999999998765555555
Q ss_pred CCCcEEEEeCCCCCCC----------------C------cc---------cceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433 199 DDAQICLWDINAAPKN----------------K------SL---------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~----------------~------~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 247 (424)
....+.|-+..-+... . .+ ..+...-.|...|..+.||..|.++..+..
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 5555666554322100 0 00 001222235555666666665554322211
Q ss_pred -------------------------------------------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433 248 -------------------------------------------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 248 -------------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 284 (424)
....|+|||+..... +..+......|.+++.+|.
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH---HHHHhcCCeeeeeeeecCC
Confidence 123344444443222 1222233456889999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCC
Q 014433 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP 364 (424)
Q Consensus 285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 364 (424)
|.+ |+.|+.|+.+..||+.-..++.+++..|...+++++|++.-+ +|++|+.||++.||.-..-.... .+.-.
T Consensus 619 GDn-li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~-----qnpli 691 (733)
T KOG0650|consen 619 GDN-LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLL-----QNPLI 691 (733)
T ss_pred CCe-EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhh-----cCCce
Confidence 997 778999999999999987789999999999999999999986 89999999999998654322110 01112
Q ss_pred eeeEEEcCCCCC----cceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433 365 ELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 365 ~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~dg~i~vw 402 (424)
..+..+.||... |.++.|||..+| |+++|.||+|++|
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 345677888765 889999999996 6777889999998
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=176.83 Aligned_cols=246 Identities=18% Similarity=0.269 Sum_probs=195.1
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCCCceEEEEeCCCc
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.+.+|.++||+.+.. .||.+-.+|.|.||++.. .+.....+.++. ..|-+|+|++.+ .|++.+.+|.
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~---------~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~ 91 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSN---------NWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGS 91 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCC---------CceeeEEEecCCCCceeeEEEccCC--eEEeecCCce
Confidence 578999999999775 699999999999999986 245555666654 579999999644 5999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|.-||+.+. ++...+....+.|++++.+|.+. .++.|++||.+..++...+.. .....+...++.|.+++|+
T Consensus 92 i~EwDl~~l------k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I-~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 92 ITEWDLHTL------KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKI-TYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred EEEEecccC------ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceE-EEEeecccccceEEEEEec
Confidence 999999766 34555666789999999999886 567899999777777766542 2222334456899999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEe-----cC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTF-----DS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-----~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|++.. +++|+.||.|++||..+ +..++.. .. ...-|+++.|-.++ .+++|..-|+|.+||...+
T Consensus 164 ~~~~~-i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~g---- 235 (691)
T KOG2048|consen 164 PTGTK-IAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFG---- 235 (691)
T ss_pred CCccE-EEecccCceEEEEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCc----
Confidence 99974 99999999999999998 4433311 11 22347888888666 5999999999999999876
Q ss_pred CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
.++..+..|.+.|.+++..+++. .++++|.|+.|.-+...++.
T Consensus 236 ----------TLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 236 ----------TLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred ----------chhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCc
Confidence 55667788899999999999988 58888999999999888773
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.7e-22 Score=178.19 Aligned_cols=241 Identities=17% Similarity=0.277 Sum_probs=196.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.-...|.++...|+++ -|++|+.-.++.|||+... .......+....-.+++|+.+|+.+ +.+++..||.
T Consensus 463 ~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAap--------TprikaeltssapaCyALa~spDak-vcFsccsdGn 532 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAP--------TPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGN 532 (705)
T ss_pred CcccceeeeEecCCCc-eEEeccccceeeeeeccCC--------CcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCc
Confidence 3456788999999997 5777888999999999872 1222233444445678999999887 7899999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
|.|||+... ..++.+++|.+.+.||..+++|..+. +|+-|.+|+.||+|.+.. +.. ....+.|.++.++
T Consensus 533 I~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrq---lqq-hdF~SQIfSLg~c 601 (705)
T KOG0639|consen 533 IAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQ---LQQ-HDFSSQIFSLGYC 601 (705)
T ss_pred EEEEEcccc------eeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhh---hhh-hhhhhhheecccC
Confidence 999999865 35778899999999999999998776 999999999999999764 222 1246789999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|.+.+ +|.|-.++.+-|...+. .....+..|.+-|.++.|.+.|+ ++++.+.|+.+..|....+.
T Consensus 602 P~~dW-lavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGa----------- 666 (705)
T KOG0639|consen 602 PTGDW-LAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGA----------- 666 (705)
T ss_pred CCccc-eeeecccCcEEEEecCC--ccceeecccccEEEEEEecccCc-eeeecCchhhhhhccCcccc-----------
Confidence 99995 99999999998888774 45567778999999999999997 68899999999999987753
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
.+|... ..+.|.++..+.+.+ +|+||+.|....||.+
T Consensus 667 ---siFqsk-E~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 ---SIFQSK-ESSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred ---ceeecc-ccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 344433 356799999999999 6999999999998875
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.5e-22 Score=164.83 Aligned_cols=228 Identities=17% Similarity=0.265 Sum_probs=173.2
Q ss_pred EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 252 (424)
.+++|...|++++|+.+|+ .|++++.|++|++|+++.-... .-++++.-- .-+..+.+.|.|+-+.+++++....++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENK-EHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhh-hhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 4889999999999999998 7999999999999999864221 111111111 123567899999999888888888899
Q ss_pred EEEEcCCCCCCC-C--------eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEE
Q 014433 253 LIWDLRTPSVSK-P--------VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV 323 (424)
Q Consensus 253 ~i~d~~~~~~~~-~--------~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~ 323 (424)
++|.+...+... + ......|...+..+-....+. +|++++.|..|.+|+++ ++.+..+......-+..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cceeeeeccccccccce
Confidence 999875432211 1 111134566777777766555 79999999999999999 68888888888888899
Q ss_pred EEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
+.||+|+ ++++++.---|++|.+-..+.-... .....+.+.||.+.|..++|+++.+ .++|.+.||.++|||
T Consensus 235 avSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fq------ev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 235 AVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQ------EVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWD 306 (420)
T ss_pred eeCCCCc-EEEEecCCCCceEEEEEeccCcchh------hhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEee
Confidence 9999996 7888888888999998554321111 1245678899999999999999999 699999999999999
Q ss_pred cCCccCCCCCC
Q 014433 404 MAENIYHDEDD 414 (424)
Q Consensus 404 ~~~~~~~~~~~ 414 (424)
..-.+-..++.
T Consensus 307 tdVrY~~~qDp 317 (420)
T KOG2096|consen 307 TDVRYEAGQDP 317 (420)
T ss_pred ccceEecCCCc
Confidence 98765544443
No 151
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.8e-21 Score=158.96 Aligned_cols=207 Identities=17% Similarity=0.264 Sum_probs=163.2
Q ss_pred EEEEEeccCCceeEEEecCCCC-cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433 117 QIIQQINHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 117 ~~~~~~~h~~~v~~~~~~p~~~-~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
++-..+.|.+.|+++.|.+.-. ..|++|+.||.|.+|+... +.....+++|.+.|+.|+.+|.++ +-+
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHPS~K-LAL 143 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----------WELLKSLKAHKGQVTDLSIHPSGK-LAL 143 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----------eEEeeeecccccccceeEecCCCc-eEE
Confidence 3344567999999999998542 3588899999999999987 888899999999999999999988 788
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+.+.|+.+++||+-.++....+. -....+.+.|+|.|.+++ .++. ..|-+|.+........+ .....
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~-------L~~~at~v~w~~~Gd~F~-v~~~-~~i~i~q~d~A~v~~~i----~~~~r 210 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLN-------LKNKATLVSWSPQGDHFV-VSGR-NKIDIYQLDNASVFREI----ENPKR 210 (362)
T ss_pred EEcCCceeeeehhhcCccceeec-------cCCcceeeEEcCCCCEEE-EEec-cEEEEEecccHhHhhhh----hcccc
Confidence 89999999999998875432221 122334499999998654 4443 56889998876542222 22355
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc--CCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN--PKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+.|+.|... . .|++|+.|+.|.+||... ..+...+.+|..+|-.+.+- |.+ .+|++++.||.|+|||++...
T Consensus 211 ~l~~~~l~~-~-~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 211 ILCATFLDG-S-ELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ceeeeecCC-c-eEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccc
Confidence 777877653 3 588999999999999998 78999999999999999853 445 589999999999999998753
No 152
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=166.50 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=197.3
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEE
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
....+|.+.|++|.|+.+++ +||+|+.|..++||++...-.. ...+|+.... .|...|.||+|...+. .+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~----k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG 123 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVR----KTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSG 123 (609)
T ss_pred hhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhh----cCCCCceeccCccccceEEEEEccCCe-eEecC
Confidence 34568999999999999875 9999999999999998752110 1124443333 3568999999998555 79999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
..+++|...|+++.+. +..+. ...+.|..+..+|.. ++|++.+.++.|.+||.|.......+.........
T Consensus 124 ~~~~~VI~HDiEt~qs------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQS------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred CCcceeEeeeccccee------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 9999999999987643 22222 234589999999995 57789999999999999986532223333345667
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-------------------------------------cC---
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-------------------------------------DS--- 315 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------------------------------------~~--- 315 (424)
..++.|+|..+.+|++.+..+-+.+||.|....++... ..
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 88999999999999999999999999998754321111 00
Q ss_pred --------CC-------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC----CcCCCC-----CeeeEEEc
Q 014433 316 --------HK-------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE----DAEDGP-----PELLFIHG 371 (424)
Q Consensus 316 --------h~-------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~-----~~~~~~~~ 371 (424)
|+ ..+.+++|..+. -+++|+.+-.|++|.+........+. +.+.-| ...+.+++
T Consensus 277 R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 277 RCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred cceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 11 134455555443 37899999999999987654332211 111111 23467789
Q ss_pred CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
||.+.++.+.|+|... +|++.+..+.++||..-..
T Consensus 355 GHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 355 GHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred cccccccceeecCCcc-eEeccchhhheeccccccC
Confidence 9999999999999877 8999999999999987554
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=6e-21 Score=174.59 Aligned_cols=260 Identities=18% Similarity=0.344 Sum_probs=198.6
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceeEEEecCCCCceEEEEe
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
++|.+-|+++.|+|.+. .|.+++.|.++.+|...+. .+.+.....+. +.....++..|+|++. .+++-+
T Consensus 264 ~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~------tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g 335 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDEN------TGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHG 335 (764)
T ss_pred cCcccceEEEEEccchh-hheecccCcceEEEecCCc------cceEEEEEEeecccccccceeeEEEcCCCC-EEEEec
Confidence 37999999999999885 5777899999999998761 11222223332 3345578999999886 788889
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC---------------
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------- 263 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~--------------- 263 (424)
..|..++|..... ..........+|...|.+++|+|.|.+++ +.+.|.+-|+|-.-..+..
T Consensus 336 ~~Gg~hlWkt~d~---~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 336 RTGGFHLWKTKDK---TFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred ccCcEEEEeccCc---cceeeccccccccccceeeeecCCCCEEE-Eeccccceeeecccccccceeeecccccccccce
Confidence 9999999983221 23334455778999999999999998665 7888888887633200000
Q ss_pred --------------------------------------------------------------------------------
Q 014433 264 -------------------------------------------------------------------------------- 263 (424)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (424)
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence
Q ss_pred ------------------------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCCCCCcceEec
Q 014433 264 ------------------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRKISTALHTFD 314 (424)
Q Consensus 264 ------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~ 314 (424)
..++.+.+|.-.|++++.+|++. ++|+++... .|++|+..+ ...++.+.
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~-W~~~~~L~ 569 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTAN-WLQVQELE 569 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccc-hhhhheec
Confidence 11233457888899999999887 799987643 699999988 56677899
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA 394 (424)
Q Consensus 315 ~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 394 (424)
.|.-.|+.++|||+++ +|++.+.|.++.+|......... .-....+.|+.-|++..|+|++.+ ++|+|
T Consensus 570 ~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e----------~~fa~~k~HtRIIWdcsW~pde~~-FaTaS 637 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDE----------FRFACLKAHTRIIWDCSWSPDEKY-FATAS 637 (764)
T ss_pred ccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchh----------hhhccccccceEEEEcccCcccce-eEEec
Confidence 9999999999999996 79999999999999985432110 112336789999999999999996 99999
Q ss_pred CCCcEEEEecCCc
Q 014433 395 EDNILQIWQMAEN 407 (424)
Q Consensus 395 ~dg~i~vw~~~~~ 407 (424)
.|.+|+||.....
T Consensus 638 RDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 638 RDKKVKVWEEPDL 650 (764)
T ss_pred CCceEEEEeccCc
Confidence 9999999999887
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-20 Score=156.94 Aligned_cols=235 Identities=17% Similarity=0.258 Sum_probs=174.9
Q ss_pred CCcEEEEEEe-ccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433 113 NGKVQIIQQI-NHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 113 ~~~~~~~~~~-~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
+++..+.... .|.+.|..+.|.+. -..++|+++.|+++.||.-.....+. ....+....++......|+.+.|.|..
T Consensus 46 s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~h 124 (361)
T KOG2445|consen 46 SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKH 124 (361)
T ss_pred CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc-ccceeEEEEEeecCCcceeEEEecchh
Confidence 3455555443 59999999999763 23499999999999999975322221 123456667788888999999999975
Q ss_pred Cc-eEEEEeCCCcEEEEeCCCCCCCCcccceeeee-------cCCccEeeEEEecC--CCcEEEEEeCC-----CeEEEE
Q 014433 191 EG-HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLR--HEYLFGSVGDD-----QYLLIW 255 (424)
Q Consensus 191 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~--~~~~~~s~~~d-----g~i~i~ 255 (424)
.+ .|++++.||.++||+.-.............++ .+..+..|+.|+|. ...+||+|+.+ +.++||
T Consensus 125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 44 48999999999999876554333332222222 46678899999874 34477777765 478888
Q ss_pred EcCCCC-CCCCeeeeeccCCCeeEEEecCCCC---eEEEEEeCCCcEEEEECCCCC-------------------CcceE
Q 014433 256 DLRTPS-VSKPVQSVVAHQSEVNCLAFNPFNE---WILATGSTDKTVKLFDLRKIS-------------------TALHT 312 (424)
Q Consensus 256 d~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~---~~l~tg~~dg~i~iwd~~~~~-------------------~~~~~ 312 (424)
...... ....+..+..|+.+|+.|+|.|.-. ++||+++.|| |+||.++... +.+..
T Consensus 205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred EecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 776543 3445667778999999999999633 5899999999 9999987311 12555
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 313 FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 313 ~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+..|++.|.++.|+-.| .+|++.+.||+|++|.....
T Consensus 284 ~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence 77899999999999999 58999999999999987654
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.6e-21 Score=161.41 Aligned_cols=253 Identities=19% Similarity=0.303 Sum_probs=187.4
Q ss_pred cCCceeEEEecCC---CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 124 HDGEVNRARYMPQ---NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 124 h~~~v~~~~~~p~---~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
|......++|+-+ +.-++|+|+.-|.|+|.|+.+ .+....+.+|..+|+.|.++|..++++++||.|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------hhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence 4555566677542 223788888999999999987 566778999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-----------------
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS----------------- 263 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~----------------- 263 (424)
.+|++|++++..+.. ...-+.+|.+.|.++.|++++. .|++++.|.+|++|++..++..
T Consensus 158 ~svRlwnI~~~~Cv~---VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p 233 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVA---VFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP 233 (385)
T ss_pred ceEEEEeccCCeEEE---EecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence 999999998874322 2233568999999999999998 5679999999999999843211
Q ss_pred -------CCe-eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-------------cceEecCCCCCEEE
Q 014433 264 -------KPV-QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-------------ALHTFDSHKEEVFQ 322 (424)
Q Consensus 264 -------~~~-~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------------~~~~~~~h~~~v~~ 322 (424)
-+. .+...|...|-|+.|- |. ++++-+-++.|..|-.-...+ .+..+......|.-
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred CCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 001 0223477778888886 45 677888889999998732222 23444444556665
Q ss_pred EEE--cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433 323 VGW--NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 323 ~~~--sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 400 (424)
+.| .|.++ +||.|...|.|.+||++...... .....+.-....|...+|+.++. +|+...+|++|.
T Consensus 311 irf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~~----------~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 311 IRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPPK----------CTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVW 378 (385)
T ss_pred EEEeecHHHH-HHhhccCCCcEEEEECCCCCCcc----------CceEEeccccceeeeeeecccCc-EEEEEeCCCcEE
Confidence 554 56664 79999999999999999864321 11222333356799999999999 677778899999
Q ss_pred EEecC
Q 014433 401 IWQMA 405 (424)
Q Consensus 401 vw~~~ 405 (424)
-||..
T Consensus 379 rwdrv 383 (385)
T KOG1034|consen 379 RWDRV 383 (385)
T ss_pred EEEee
Confidence 99853
No 156
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=3.5e-21 Score=165.21 Aligned_cols=217 Identities=20% Similarity=0.346 Sum_probs=175.0
Q ss_pred EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCc-ccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe
Q 014433 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS-LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 251 (424)
.+.+|+++|..++|+|.+.+.||+||.|.+|.||.+-.+..... ..++..+.+|...|.-++|+|...++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999999998999999999999999976544332 25677789999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC-CEEEEEEcCCCC
Q 014433 252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE-EVFQVGWNPKNE 330 (424)
Q Consensus 252 i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~-~v~~~~~sp~~~ 330 (424)
|.+|++.++.. +..+. |...|.++.|+.+|. +|+|++.|..|+|||.|+ +..+..-.+|.+ .-..+.|-.++.
T Consensus 156 v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 156 VSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred EEEEeccCCce---eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCc
Confidence 99999999875 44554 999999999999998 799999999999999998 777777777765 456777888885
Q ss_pred cEEEEEE---CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 331 TILASCC---LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 331 ~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
++.||- .+..+.+||..+..+. ..+..+.. .+.|.---|.++...+.++|-.|+.|+-|.+...
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP-----------~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEP-----------IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -eeeeccccccccceeccCcccccCc-----------ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 555553 3678999998876542 33334433 3345555678888855567778999999999876
Q ss_pred c
Q 014433 408 I 408 (424)
Q Consensus 408 ~ 408 (424)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 4
No 157
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=4.8e-21 Score=175.74 Aligned_cols=258 Identities=16% Similarity=0.238 Sum_probs=191.9
Q ss_pred EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC----------CCceEEEEeC
Q 014433 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----------KEGHLLSGSD 199 (424)
Q Consensus 130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----------~~~~l~s~~~ 199 (424)
++.|.|... .+.+--.|..++|||+..... ......+.-|...|+++.--|- .+..|++|+.
T Consensus 329 A~~Fdet~~-klscVYndhSlYvWDvrD~~k-------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 329 ACQFDETTD-KLSCVYNDHSLYVWDVRDVNK-------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred EEEecCCCc-eEEEEEcCceEEEEecccccc-------ccceeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence 577888776 566668899999999987321 2223445568888888876551 1225999999
Q ss_pred CCcEEEEeCCCCCCCCcc-------------------------------cceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 200 DAQICLWDINAAPKNKSL-------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
|++|++|++........+ +.....-.....+.+++.+|++.+| |+|..
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL-AsGDr 479 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL-ASGDR 479 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee-cccCc
Confidence 999999999863221110 0000111123468999999999865 79999
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC--CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF--NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s 326 (424)
-|.++|||+...+. ...+.+|...|.|+.|+.- +..+||+++.|+.|+|||+.....+++++.+|...|+++.|.
T Consensus 480 ~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred cCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 99999999988553 5667899999999999742 345899999999999999987678888899998888888886
Q ss_pred CCCC------------------------------------------------cEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 327 PKNE------------------------------------------------TILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 327 p~~~------------------------------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
..|- .++++++.|..|+||++.+++..+.
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~--- 633 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS--- 633 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee---
Confidence 5541 3567888888888888887654322
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
..--++|.+....+...|.|-| |++...|.++.++|+.++.+..
T Consensus 634 --------FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 634 --------FKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred --------ecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhh
Confidence 2223456677888999999995 7888889999999999987653
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-21 Score=171.42 Aligned_cols=246 Identities=17% Similarity=0.312 Sum_probs=185.7
Q ss_pred eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 128 v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 207 (424)
+..+.|+..+...+|+.+.|..|++|.-.....+ ......+.+. .-.|++...... ++++|+..+.|+|||
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~------Vp~~~k~~gd--~~~Cv~~~s~S~-y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE------VPRVRKLTGD--NAFCVACASQSL-YEISGGQSGCVKIWD 107 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCc------cceeeccccc--hHHHHhhhhcce-eeeccCcCceeeehh
Confidence 7889998766444555567789999987653111 1112222222 334444444344 899999999999999
Q ss_pred CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 287 (424)
++.. .+.+.++.|.+.|+++.++..+. .||+++..|.|.|..+.++....++. ......|.-+.|+|..++
T Consensus 108 l~~k------l~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~--~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 108 LRAK------LIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFT--IDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred hHHH------HHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcccccee--cCCCCeEEEeecccccce
Confidence 9843 24566788999999999998876 46899999999999999876422222 122445678999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
+|.+++++|.|.+||+............|..+...|+|+|..+.+|++.+.|..|.+||++...... .+.
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l~ 248 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RLT 248 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------eee
Confidence 9999999999999999985555566678999999999999999999999999999999998642111 111
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...+...++|.++|. .|+.|...|.|..||+...
T Consensus 249 -----y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 249 -----YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -----ecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 234689999999999 5888999999999999754
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=159.33 Aligned_cols=213 Identities=23% Similarity=0.427 Sum_probs=167.3
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
+-+.|.|+.|.|++.. +|+- .+..|.+|++........ ..+...-.+|....++-+|+|.....-+....|+++
T Consensus 122 avg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~va----ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVA----EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred HhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchhe----eecccccccccceecccccCCCCccceEEEeCCCcE
Confidence 5579999999998764 5543 388999999987433110 000111122566788899999544445555678999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~ 283 (424)
..||+++..+...+ -..|...|.++.|+|+-.+++++|++||.|+|||+|..+. ++..+.+|...|.++.|+|
T Consensus 196 ~~~D~RT~~~~~sI-----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSI-----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred EEEEccchhhhcch-----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecC
Confidence 99999977543333 3468889999999999999999999999999999998764 7888999999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCC----------------------------CcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433 284 FNEWILATGSTDKTVKLFDLRKIS----------------------------TALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 284 ~~~~~l~tg~~dg~i~iwd~~~~~----------------------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s 335 (424)
....++++|+.|..|.+|...... ..+.++..|...|.+++||.-.+.+||+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 888899999999999999754311 1255778899999999999999999999
Q ss_pred EECCCeEEEeeCCC
Q 014433 336 CCLGRRLMVWDLSR 349 (424)
Q Consensus 336 ~~~dg~i~iwd~~~ 349 (424)
-+.||++.|=.+..
T Consensus 349 LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 349 LSYDGRVIISSVPR 362 (370)
T ss_pred eccCceEEeecCCh
Confidence 99999999876643
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=4.7e-21 Score=164.38 Aligned_cols=215 Identities=17% Similarity=0.295 Sum_probs=171.1
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-+|.++|..++|+|.+.+.||+|+.|.+|.||.+....... ....+...|.+|...|.-++|+|...+.|++++.|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCccccc---CcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 48999999999999988999999999999999998743333 224678899999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC-CeeEEE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVNCLA 280 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~v~ 280 (424)
+|.+||+.++.. +..+. |.+.|.++.|+.+|. ++++++.|..|+|||.|++.. +....+|.+ .-..+.
T Consensus 155 ~v~iWnv~tgea------li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~---v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 155 TVSIWNVGTGEA------LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTV---VSEGVAHEGAKPARAI 223 (472)
T ss_pred eEEEEeccCCce------eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcE---eeecccccCCCcceeE
Confidence 999999998853 22333 999999999999987 667999999999999999875 444456654 344556
Q ss_pred ecCCCCeEEEEEeC---CCcEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 281 FNPFNEWILATGST---DKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 281 ~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|-.++. ++.||.. +..+.+||..+..+++..... .++.|.---|.++..-+.++|-.|+.|+-|.+....
T Consensus 224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 767776 5666553 678999999987777543332 245676667788886555666779999999997643
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=4.1e-20 Score=159.31 Aligned_cols=292 Identities=22% Similarity=0.325 Sum_probs=205.3
Q ss_pred CCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEE
Q 014433 74 ENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYV 152 (424)
Q Consensus 74 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~i 152 (424)
++.++.|++|.+....... ...+++....+ .|..+|++++|+|+|. ++|+|+.+|.|.+
T Consensus 32 ~G~D~~iriW~v~r~~~~~-------------------~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~l 91 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGG-------------------GDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFL 91 (434)
T ss_pred ccCccceeeeeeeecCCCC-------------------CceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEE
Confidence 5577889999985321100 11456666655 5899999999999997 9999999999999
Q ss_pred EeCCCCCC------CCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014433 153 FDYSKHPS------KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH 226 (424)
Q Consensus 153 w~~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 226 (424)
|....... .......+.....+.+|...|+.++|+|++. ++++++.|..+++||+..+. ....+..|
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~------l~~~~~dh 164 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ------LLAILDDH 164 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccce------eEeecccc
Confidence 99773111 0011233555677889999999999999888 79999999999999998874 45667789
Q ss_pred CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-----------------eee---ccCCCeeEEEecCCCC
Q 014433 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-----------------SVV---AHQSEVNCLAFNPFNE 286 (424)
Q Consensus 227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-----------------~~~---~~~~~v~~v~~~~~~~ 286 (424)
...+..++|.|.+.+ +++-+.|...+++.+........+. .+. .-..-...++|+|+|.
T Consensus 165 ~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred ccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 999999999999875 4677888877777665433211111 000 0112345678999998
Q ss_pred eEEEEEeC----C-----CcEEEEECCCCCCcceEecCCCCCEEEEEEcCC-----------------CCcEEEEEECCC
Q 014433 287 WILATGST----D-----KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----------------NETILASCCLGR 340 (424)
Q Consensus 287 ~~l~tg~~----d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~-----------------~~~~l~s~~~dg 340 (424)
+|++... . .+.++|+-....+|+..+.....++..+.|+|- .+.++|.++.+
T Consensus 244 -llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~- 321 (434)
T KOG1009|consen 244 -LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN- 321 (434)
T ss_pred -EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-
Confidence 6766542 2 345777777777888888887778878777762 11245555555
Q ss_pred eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.|.|||..... .+...-.-|-..|++++|+++|.. ++..+.||..-+-.+....+
T Consensus 322 svyvydtq~~~-------------P~~~v~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 322 SVYVYDTQTLE-------------PLAVVDNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eEEEecccccc-------------ceEEEeeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcchhc
Confidence 59999987642 223334457788999999999995 55558899888777666544
No 162
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.4e-19 Score=163.67 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=163.7
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 218 (424)
.++++++.|+.|++||+.+ ......+..+. .+.+++|+|++..++++++.++.|++||+.++..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t----------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----- 65 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT----------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV----- 65 (300)
T ss_pred cEEEEecCCCEEEEEECCC----------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----
Confidence 3788999999999999876 34455565544 4678999999874446778899999999987632
Q ss_pred ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-c
Q 014433 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-T 297 (424)
Q Consensus 219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-~ 297 (424)
...+..+. .+..++|+|+++.++++++.++.|++||+++... +..+. +...+.+++|+|++. ++++++.++ .
T Consensus 66 -~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~---~~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~ 138 (300)
T TIGR03866 66 -IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV---LAEIP-VGVEPEGMAVSPDGK-IVVNTSETTNM 138 (300)
T ss_pred -EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE---EeEee-CCCCcceEEECCCCC-EEEEEecCCCe
Confidence 22233232 3567899999987777777899999999987543 33333 234578899999998 466666654 5
Q ss_pred EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE-cCC--C
Q 014433 298 VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH-GGH--T 374 (424)
Q Consensus 298 i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h--~ 374 (424)
+.+||.++ ...+..... ...+..++|+|++..+++++..++.|++||+.+........ ... ..+ .
T Consensus 139 ~~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~----------~~~~~~~~~~ 206 (300)
T TIGR03866 139 AHFIDTKT-YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT----------FEIPGVHPEA 206 (300)
T ss_pred EEEEeCCC-CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee----------eccccccccc
Confidence 77889886 444433332 34567899999997555666679999999998754321110 000 001 1
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.....++|+|++++++++.+.++.+.+||+.++.+
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 12356889999996566666678899999987654
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.4e-21 Score=172.47 Aligned_cols=269 Identities=16% Similarity=0.184 Sum_probs=195.5
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
....|...|+.++|.|..+ .|++++.||.+.+|+++. ..........++.++.+|.++|.|++..+++. .+++|+.
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcc--cCCccccceeeeEEEecccCceEEEEecCCce-EEEeecc
Confidence 4556899999999999877 799999999999999954 22223355788999999999999999999888 7999999
Q ss_pred CCcEEEEeCCCCCCC----CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 200 DAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
||+|+.|++-..... ........+.+|.+.|+.+++++...++ ++++.||++++|+...... .......-.+.
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L-lscs~DgTvr~w~~~~~~~--~~f~~~~e~g~ 441 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL-LSCSSDGTVRLWEPTEESP--CTFGEPKEHGY 441 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccce-eeecCCceEEeeccCCcCc--cccCCccccCC
Confidence 999999977532211 1112345678999999999999987665 5999999999999876542 11111122334
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
..++++-.....+.++...-+.-.++++.. ...+..+.. -...+..+.++|..+ +.+++..|+.|+++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNK 519 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceeccccc
Confidence 456666543322222222233333333332 222222221 124578899999986 78899999999999998
Q ss_pred CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 412 (424)
++ .+++....|...++++++.|+|. .|++++.|+.+++|++....+..+
T Consensus 520 ~~--------------~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 520 TG--------------KILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cc--------------ccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchheeec
Confidence 86 56777778899999999999999 589999999999999976655443
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=6.4e-21 Score=159.95 Aligned_cols=269 Identities=17% Similarity=0.269 Sum_probs=194.8
Q ss_pred EeccCCceeEEEecC----CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE--ecCCCceeEEEecCC---CC
Q 014433 121 QINHDGEVNRARYMP----QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL--RGHSTEGYGLSWSKF---KE 191 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p----~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~---~~ 191 (424)
+..|..+|..++|++ +.+.++|+.+. ..+.+|...... ........ ..|....+.++|+-+ +.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~-------~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDG-------GIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcc-------ceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 446889999999985 45567888764 578999987621 01111111 136677888898754 23
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
-++|+|+.-|.|+|.|+.+++ ....+.+|...|+.|.++|..++++++++.|..|++|++++..+...+.-+.+
T Consensus 106 p~la~~G~~GvIrVid~~~~~------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQ------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred eeEEeecceeEEEEEecchhh------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 378999999999999998774 45567789999999999999999999999999999999999876444444578
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--C------------------------cc-eEecCCCCCEEEEE
Q 014433 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--T------------------------AL-HTFDSHKEEVFQVG 324 (424)
Q Consensus 272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~------------------------~~-~~~~~h~~~v~~~~ 324 (424)
|...|.++.|++++. .|++++.|.+|++|++.... . |. .+-..|...|-|+.
T Consensus 180 HrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred ccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 999999999999999 59999999999999998311 0 00 12234777788888
Q ss_pred EcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE--eCCCCCcEEEEEeCCCcEEEE
Q 014433 325 WNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS--WNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 325 ~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~dg~i~vw 402 (424)
|-- .++++-+-++.|..|......+......+.......+..+.-....|+-+. |.|-.+ +||.|...|.|.+|
T Consensus 259 w~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 259 WFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVW 334 (385)
T ss_pred HHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEE
Confidence 864 367888888999999884333221111111222234444444455566554 456677 69999999999999
Q ss_pred ecCCcc
Q 014433 403 QMAENI 408 (424)
Q Consensus 403 ~~~~~~ 408 (424)
|+....
T Consensus 335 dL~~~e 340 (385)
T KOG1034|consen 335 DLDNNE 340 (385)
T ss_pred ECCCCC
Confidence 998763
No 165
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3.8e-19 Score=157.29 Aligned_cols=244 Identities=19% Similarity=0.273 Sum_probs=188.0
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceeEEEecCCCCceEEEEeCCCc
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.++.|....|+|.+++++++++ .|.+..|+...... .+....+..+ +.-|.|++|.+++. +++|..+|.
T Consensus 199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l-------~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~ 268 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSL-------VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGN 268 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCce-------EEEeeccccccceEEEEEEEcCCCC--EEeecCCce
Confidence 4567889999999999999876 58999999876211 1112223322 25699999999887 999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-------------------
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------- 263 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------- 263 (424)
|.||+..+.. ..+....|.+.|.+++...+|. ++ +|+.|..|..||-.-.+..
T Consensus 269 i~Iw~~~~~~------~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 269 ILIWSKGTNR------ISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG 340 (626)
T ss_pred EEEEeCCCce------EEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence 9999996553 2333348999999999999885 54 7999999999983211100
Q ss_pred ------------------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEE
Q 014433 264 ------------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW 325 (424)
Q Consensus 264 ------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~ 325 (424)
.......+|......++.+|+.. +++|++.|+.+++|+ . .++..+... ..++.++.|
T Consensus 341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~-~k~~wt~~~-~d~~~~~~f 415 (626)
T KOG2106|consen 341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--D-HKLEWTKII-EDPAECADF 415 (626)
T ss_pred cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--C-CceeEEEEe-cCceeEeec
Confidence 00112346777888899999877 799999999999999 2 345544443 578899999
Q ss_pred cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
+|.| .+|.|...|...+.|..+. .++..+.. ..+++.++|+|+|. +||.|+.|+.|+||.++
T Consensus 416 hpsg--~va~Gt~~G~w~V~d~e~~--------------~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 416 HPSG--VVAVGTATGRWFVLDTETQ--------------DLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVS 477 (626)
T ss_pred cCcc--eEEEeeccceEEEEecccc--------------eeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEEC
Confidence 9998 6999999999999999873 45555555 78899999999999 79999999999999998
Q ss_pred Ccc
Q 014433 406 ENI 408 (424)
Q Consensus 406 ~~~ 408 (424)
.+.
T Consensus 478 ~~g 480 (626)
T KOG2106|consen 478 ANG 480 (626)
T ss_pred CCC
Confidence 763
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4e-20 Score=161.75 Aligned_cols=250 Identities=12% Similarity=0.172 Sum_probs=192.3
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
+.|+++.|+|..+ ++.+++.||+++||.++... ...+..+.--..+|.+.+|.|+|...+++++....++.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~--------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKV--------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCcc--------ChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 7899999999877 88899999999999998732 23345555567899999999999878999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433 206 WDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 284 (424)
||+.+.+.. .+....++. ..+.....+++++ +++..+..|.|.+....++.. +..++ -.+.|..++|+.+
T Consensus 285 yDle~ak~~----k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el---i~s~K-ieG~v~~~~fsSd 355 (514)
T KOG2055|consen 285 YDLETAKVT----KLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL---ITSFK-IEGVVSDFTFSSD 355 (514)
T ss_pred eeccccccc----cccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh---hheee-eccEEeeEEEecC
Confidence 999876542 223333333 4577788899987 567889999999999988775 43333 3678999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+.. |++.+.+|.|.+||++. ..+++.+.. .+. -++++.++++. +||+|+..|.|.|||..+... ..
T Consensus 356 sk~-l~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~--------s~ 423 (514)
T KOG2055|consen 356 SKE-LLASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFA--------ST 423 (514)
T ss_pred CcE-EEEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCCc-eEEeccCcceEEEeccchhhc--------cC
Confidence 985 55555688999999998 477777765 333 36777789986 899999999999999876432 22
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe--CCCcEEEEecCC
Q 014433 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMAE 406 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~ 406 (424)
.++.+..+..-...|+++.|+++.. +|+-+| ..+.+++-.+..
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccc
Confidence 3466666666677899999999998 666554 566777766544
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=2e-19 Score=168.76 Aligned_cols=241 Identities=20% Similarity=0.302 Sum_probs=180.5
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE 227 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 227 (424)
+.+.||++... ..+...+. -...|.++.|+|..+++++.|..+|.|.+||++.+........-.....|.
T Consensus 222 ~~~~vW~~~~p---------~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNP---------NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCC---------CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 47999999872 34444444 567899999999999999999999999999999876532222223344689
Q ss_pred ccEeeEEEecCCCc-EEEEEeCCCeEEEEEcCCCCCCCCeeee---e------ccCCCeeEEEecCCCCeEEEEEeCCCc
Q 014433 228 GVVEDVAWHLRHEY-LFGSVGDDQYLLIWDLRTPSVSKPVQSV---V------AHQSEVNCLAFNPFNEWILATGSTDKT 297 (424)
Q Consensus 228 ~~v~~~~~~~~~~~-~~~s~~~dg~i~i~d~~~~~~~~~~~~~---~------~~~~~v~~v~~~~~~~~~l~tg~~dg~ 297 (424)
.+++.+.|..+..+ -|++++.||.|..|+++.-......... . .....+++++|.+...+.|+.|+.+|.
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 99999999765433 2458889999999998864331111111 1 123468999999999999999999999
Q ss_pred EEEEECC---CCC----CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE
Q 014433 298 VKLFDLR---KIS----TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH 370 (424)
Q Consensus 298 i~iwd~~---~~~----~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 370 (424)
|.--+.. ... +....+..|.++|.++.++|.+..++++++ |.+++||...... ..++.+
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-------------~Pl~~~ 437 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-------------SPLLSL 437 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-------------Ccchhh
Confidence 8874332 212 234466778999999999999987777777 8899999876321 345555
Q ss_pred cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433 371 GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 371 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 412 (424)
..+...|++++|||..+.+++++..||.|.+||+.....++.
T Consensus 438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 666777999999999998999999999999999988766543
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-18 Score=158.99 Aligned_cols=249 Identities=13% Similarity=0.193 Sum_probs=193.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+-.+.|.+++|++.++ |.+.+.+|.|.-||+.+ .++...+....+.|++++.+|.+. .++.|+.||.
T Consensus 67 ~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~----------lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGv 133 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHT----------LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGV 133 (691)
T ss_pred CCCCceeeEEEccCCe--EEeecCCceEEEEeccc----------CceeEEecCCCcceeEEEeCCccc-eEEeecCCce
Confidence 4557899999997553 66677899999999998 677778888889999999999887 6999999997
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC----eeeee-ccCCCee
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP----VQSVV-AHQSEVN 277 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~----~~~~~-~~~~~v~ 277 (424)
+..++...+ .+.....+...++.|.+++|+|++..+ ++|+.||.|++||...+..... +..+. .....|.
T Consensus 134 l~~~s~~p~----~I~~~r~l~rq~sRvLslsw~~~~~~i-~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 134 LYDFSIGPD----KITYKRSLMRQKSRVLSLSWNPTGTKI-AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred EEEEecCCc----eEEEEeecccccceEEEEEecCCccEE-EecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 777777544 223344455567899999999998654 6999999999999998765220 00111 1234578
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
++.|-.++ .|++|...|+|.+||... +..++.+..|...|.+++..+++. .+++++.|+.|.-|.......+
T Consensus 209 Sv~~Lrd~--tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~---- 280 (691)
T KOG2048|consen 209 SVLFLRDS--TIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSE---- 280 (691)
T ss_pred EEEEeecC--cEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccc----
Confidence 88888665 599999999999999998 789999999999999999999986 6889999999888877664321
Q ss_pred CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
.........|...|.+++..++ .+++||.|..+.+=....
T Consensus 281 ------wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 ------WVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ------eeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 1122233567777888888766 788999999888766655
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=7.8e-19 Score=167.85 Aligned_cols=267 Identities=19% Similarity=0.243 Sum_probs=182.4
Q ss_pred CceeEEEecC-CCCcEEEEEeCCCeEEEEeCCCCC-CCCCCCCCCCCcEE-EecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 126 GEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHP-SKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 126 ~~v~~~~~~p-~~~~~latg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
..|+.+.+-. ++..++.+|+.||.|+||+-.... ..++....+..+.. +.+..+.-.-++|..... +|++++.-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRS 1188 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeE
Confidence 4566666644 445589999999999999865422 12111111111111 111222234567887665 5777776889
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC--eeEEE
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE--VNCLA 280 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~v~ 280 (424)
|+|||.........+ ..+....|+++.-+-.+.+++++|..||.|++||.|.......+...+.|... |..+.
T Consensus 1189 IRIWDa~~E~~~~di-----P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADI-----PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred EEEEecccceeEeec-----ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 999999866443222 12345567777766556678999999999999999987665567777888887 99999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCC-CCcceEecCCC---CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSHK---EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h~---~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
+.+.|-.-|++|+.+|.|++||+|.. .....++..|. +.++++..+++.+ ++|+|+. +.|+||++.........
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccc
Confidence 99877656999999999999999983 22233333333 3599999999986 7888888 89999999753221110
Q ss_pred CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
. .+..+ ....+.+.+++|||..- ++++|+.|.+|.||....+..
T Consensus 1342 ~-----n~~F~---~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1342 Y-----NPGFM---GQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred c-----Ccccc---cCcCCCcceeeecchhH-hhhhccCCceEEEeecCCcCC
Confidence 0 00111 11234579999999987 799999999999999877643
No 170
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.6e-19 Score=167.35 Aligned_cols=222 Identities=18% Similarity=0.297 Sum_probs=173.0
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
+...|.+++... ..|++|+.+++|.+|.+.. ......+....-++.+++++-+|. +++.||.|-.|
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps----------~~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~v 120 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPS----------GEEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAV 120 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCC----------CCccceeeeeeccceEEEEecCCc-EEEeecCceeE
Confidence 677788887654 3789999999999999987 333334555677899999999888 79999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-----cCCCeeE
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-----HQSEVNC 278 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~ 278 (424)
++-++.... ....+.+|.++|.++.|+|.+. ++|+.+.||.|++||+.++.....+..+.. ....+..
T Consensus 121 K~~~~~D~s------~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~ 193 (933)
T KOG1274|consen 121 KLLNLDDSS------QEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTR 193 (933)
T ss_pred EEEeccccc------hheeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeee
Confidence 999997763 3566788999999999999986 778999999999999998765333222211 1456778
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
++|+|++.. |+....|+.|++|+... ......+. .+...+..++|+|+|. +||+++.||.|.|||..+...
T Consensus 194 ~aW~Pk~g~-la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~---- 266 (933)
T KOG1274|consen 194 LAWHPKGGT-LAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER---- 266 (933)
T ss_pred eeecCCCCe-EEeeccCCeEEEEccCC-ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh----
Confidence 899999885 66777899999999887 55555554 3444599999999996 799999999999999986211
Q ss_pred CCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
......|.+++|.|+.+
T Consensus 267 --------------~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 267 --------------HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred --------------ccccceeEEEecCCCCC
Confidence 11234688889988876
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=3.3e-20 Score=151.23 Aligned_cols=251 Identities=17% Similarity=0.217 Sum_probs=184.0
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
+|.+.|+++.|..++. |.+|...|.|++|.+++ ......+. .|...|+.+.--|++ .|.+-+.|+
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt----------~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~ 77 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQT----------ERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDP 77 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeec----------CccchhhhhhccceeeceeecCCc--chhhcCCCc
Confidence 9999999999988764 88899999999999998 34444555 467788999888864 389999999
Q ss_pred cEEEEeCCCCCCC--------------Ccc----c---c----------------------eee----eecCCccEeeEE
Q 014433 202 QICLWDINAAPKN--------------KSL----E---A----------------------MQI----FKVHEGVVEDVA 234 (424)
Q Consensus 202 ~i~iwd~~~~~~~--------------~~~----~---~----------------------~~~----~~~~~~~v~~~~ 234 (424)
.+.+|++...... ..+ + . +.. -.+..+.+.+..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 9999998762110 000 0 0 000 001123344444
Q ss_pred Eec--CCCcEEEEEeCCCeEEEEEcCCCCC-------CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433 235 WHL--RHEYLFGSVGDDQYLLIWDLRTPSV-------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 235 ~~~--~~~~~~~s~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~ 305 (424)
+.. ....++++|..+|.+.+||+.++.. .+.......|..+|.++.+.+.-.. =++|+.+..+..|.+..
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNH 236 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCccccceeeeecc
Confidence 322 1234667888999999999998621 1223334568999999999875442 45677778899998875
Q ss_pred CCC---cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe
Q 014433 306 IST---ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW 382 (424)
Q Consensus 306 ~~~---~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 382 (424)
... ....+...+-.|..+..-|+++ ++|+++.|++|+||..++. +.+..+.-|...|++++|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl--------------~pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL--------------NPLAVLKYHSAGVNAVAF 301 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC--------------CchhhhhhhhcceeEEEe
Confidence 211 1223333456789999999996 9999999999999999986 557777889999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEec
Q 014433 383 NPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 383 ~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
+|+.+ ++++++.|++|.+|++
T Consensus 302 spd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCCCc-hhhhccCCceEEeeec
Confidence 99988 8999999999999986
No 172
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=2.4e-19 Score=164.20 Aligned_cols=277 Identities=16% Similarity=0.259 Sum_probs=199.4
Q ss_pred cEEEEE-EeccCCceeEEEecCCC--CcEEEEEeCCCeEEEEeCCCCCCCC----C------CC-CCCCCc---------
Q 014433 115 KVQIIQ-QINHDGEVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKP----P------LD-GACSPD--------- 171 (424)
Q Consensus 115 ~~~~~~-~~~h~~~v~~~~~~p~~--~~~latg~~dg~v~iw~~~~~~~~~----~------~~-~~~~~~--------- 171 (424)
++.... .-+|.+-|.+|+|...+ ..+||+++.|..||||.+.-..... . .. ......
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 444443 34799999999998754 4689999999999999986432111 0 00 000001
Q ss_pred -EEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc-cceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433 172 -LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 172 -~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d 249 (424)
..+.||.+-|+++.|+|.+. .|++++.|.++.+|......-...- -.+....+.........|+|++. .+++-+..
T Consensus 260 eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~ 337 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRT 337 (764)
T ss_pred hhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC-EEEEeccc
Confidence 12348999999999999886 5999999999999988655322111 01112223345688999999986 45577889
Q ss_pred CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC----------CC------------
Q 014433 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK----------IS------------ 307 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~----------~~------------ 307 (424)
|..++|...............+|...|..|+|+|.|++ |++.+.|-+-++|-.-. ++
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 99999995554433444556789999999999999994 66777888877763210 00
Q ss_pred --------------------------------------------------------------------------------
Q 014433 308 -------------------------------------------------------------------------------- 307 (424)
Q Consensus 308 -------------------------------------------------------------------------------- 307 (424)
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence
Q ss_pred -------------------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCC-----eEEEeeCCCCCcccCCCCcCCCC
Q 014433 308 -------------------TALHTFDSHKEEVFQVGWNPKNETILASCCLGR-----RLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 308 -------------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
..++.+-+|...|.+++.+|++. ++|+++... .|++|+..+..
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~------------ 563 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWL------------ 563 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchh------------
Confidence 00334457888999999999995 899988643 59999998753
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
....+.+|.-.|+.++|+|+++ +|++.+.|.++.+|........
T Consensus 564 --~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 564 --QVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred --hhheecccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccch
Confidence 2446789999999999999999 5888899999999999766543
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.8e-17 Score=151.75 Aligned_cols=268 Identities=10% Similarity=0.140 Sum_probs=173.5
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
++++.++.+.+.+....++++|+++.+++++..++.|.+|++... +......... .......++++|+++.
T Consensus 23 g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-------g~l~~~~~~~-~~~~p~~i~~~~~g~~- 93 (330)
T PRK11028 23 GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-------GALTFAAESP-LPGSPTHISTDHQGRF- 93 (330)
T ss_pred CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-------CceEEeeeec-CCCCceEEEECCCCCE-
Confidence 456667777777888899999999865566567899999998731 1111111111 2335678999999984
Q ss_pred EEEE-eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC----eee
Q 014433 194 LLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP----VQS 268 (424)
Q Consensus 194 l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~----~~~ 268 (424)
|+++ ..++.|.+|+++...... ..+..+. +......++++|+++.++++...++.|.+||+.+.....+ ...
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 5554 458999999997432211 1122222 2344677889999998888888889999999986432211 011
Q ss_pred eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC-C--CcceEecCC------CCCEEEEEEcCCCCcEEEEEECC
Q 014433 269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-S--TALHTFDSH------KEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~--~~~~~~~~h------~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
. ........++|+|++++++++...++.|.+||+... + ..+..+..+ ......+.++|+++.++++...+
T Consensus 171 ~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 171 T-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred c-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence 1 123456789999999965555555899999999742 1 223333221 12334689999997544444557
Q ss_pred CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
+.|.+|++...... ..++..... ......++++|++++++++...++.|.+|++.
T Consensus 250 ~~I~v~~i~~~~~~----------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 250 SLISVFSVSEDGSV----------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEEEEeCCCCe----------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 89999999653211 011222111 12456899999999766666669999999885
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=152.46 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=156.1
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.+|++...|.|++||..+++ .+..+++++..++.+.|... +.+.+.+|+.||+|++||+|..... +......
T Consensus 42 ~vav~lSngsv~lyd~~tg~------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~ 114 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQ------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQ 114 (376)
T ss_pred eEEEEecCCeEEEEeccchh------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccC
Confidence 68889999999999998763 45667788999999999875 7778889999999999999987643 3334444
Q ss_pred cC-CCeeEEEecCCCCeEEEEEeC----CCcEEEEECCCCCCcceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433 272 HQ-SEVNCLAFNPFNEWILATGST----DKTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 272 ~~-~~v~~v~~~~~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
+. .+..|++.+-.+. ++++|.. +-.|.+||+|+..+++.. ...|...|+++.|+|..+.+|++|+.||.|.||
T Consensus 115 ~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 115 QSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 44 5778888776555 7888864 568999999997775555 457999999999999999999999999999999
Q ss_pred eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
|+....+. ..+.....|.+.|..+.|...+-..|.+-+......+|+++.+.
T Consensus 194 D~~~d~Ee-----------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 194 DTKKDNEE-----------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ecCCCcch-----------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 99875332 12222335667799999998873347777889999999999886
No 175
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=2.1e-18 Score=161.20 Aligned_cols=267 Identities=18% Similarity=0.248 Sum_probs=204.4
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
++........|.+.|.-+. |-|. .++++..++.+.||+......+. ......++...+.|+++.--+.--+.
T Consensus 103 gk~i~~~~~~~~a~v~~l~--~fGe-~lia~d~~~~l~vw~~s~~~~e~-----~l~~~~~~~~~~~Ital~HP~TYLNK 174 (910)
T KOG1539|consen 103 GKHIRHTTLLHGAKVHLLL--PFGE-HLIAVDISNILFVWKTSSIQEEL-----YLQSTFLKVEGDFITALLHPSTYLNK 174 (910)
T ss_pred cceEEEEeccccceEEEEe--eecc-eEEEEEccCcEEEEEeccccccc-----cccceeeeccCCceeeEecchhheee
Confidence 3344444456776776654 3465 45556889999999988731110 11122233333337777643333345
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
++.|+.+|.+.+|+++++ +.+..++++...|+++.-+|-=. ++|.|..+|+|.+++++.++. +..++...
T Consensus 175 IvvGs~~G~lql~Nvrt~------K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dki---l~sFk~d~ 244 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTG------KVVYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKI---LMSFKQDW 244 (910)
T ss_pred EEEeecCCcEEEEEeccC------cEEEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCcE---EEEEEccc
Confidence 999999999999999988 45778888999999999888754 788999999999999999775 66766556
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
+.|++++|.-+|..++|+|+..|.+.+||+............|.+.|..+.|.|..+ ++++++.|..+++|-..++
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~--- 320 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSG--- 320 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCC---
Confidence 999999999999999999999999999999984333444558999999999999886 8999999999999877654
Q ss_pred cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
++.+++++.-.||..+..+++|.-...+.+.+++.|++++.+++.....
T Consensus 321 -------dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~ 369 (910)
T KOG1539|consen 321 -------DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ 369 (910)
T ss_pred -------CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence 3446888999999999999999844334799999999999988865543
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.8e-18 Score=137.73 Aligned_cols=248 Identities=16% Similarity=0.205 Sum_probs=175.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 206 (424)
.|.+-+++|.++ ++++|..+|.|.++.+....+.........++...++|.++++.++|.. . +|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEe
Confidence 566678999876 7999999999999999875443332233445566789999999999983 3 577766 4999998
Q ss_pred eCCCCCCCCccc-------ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 207 DINAAPKNKSLE-------AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 207 d~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
.-+........+ +.+.-...--.|+++...|..+.+| .++.|+.++-||+.+++. ...+++|+..|.++
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i---~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI---QREYRGHTDYVHSV 162 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE---EEEEcCCcceeeee
Confidence 765433211111 1111011123689999999888777 455899999999999875 67889999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---------C-CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---------H-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---------h-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.--..+. .+++|+.||++++||.++ .+.+..+.. | ...|.+++-+. . .|++| ....+.+|.++.
T Consensus 163 v~R~~~~-qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~e--d-WlvCG-gGp~lslwhLrs 236 (325)
T KOG0649|consen 163 VGRNANG-QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--D-WLVCG-GGPKLSLWHLRS 236 (325)
T ss_pred eecccCc-ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccC--c-eEEec-CCCceeEEeccC
Confidence 9844344 488999999999999998 666665542 1 23466666554 3 45444 455699999998
Q ss_pred CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
... .+++.+.+| +..+.|..+ ++++++..+.|.-|.+..-
T Consensus 237 se~------------t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 237 SES------------TCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred CCc------------eEEEecccc---eeEeeeecc---eEEEeccccceeeeeeccE
Confidence 643 556666554 566777644 6778888888999988643
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=1.1e-18 Score=158.44 Aligned_cols=241 Identities=15% Similarity=0.264 Sum_probs=176.5
Q ss_pred EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-Ccccceee
Q 014433 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQI 222 (424)
Q Consensus 144 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~ 222 (424)
.+.-|.|-||+++.....+. ...-.+ .....|+.+.|.|.....|++++.||.|++|.+..+... ....+...
T Consensus 599 ~g~gG~iai~el~~PGrLPD-----gv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~ 672 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPD-----GVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI 672 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCc-----cccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence 45578999999987433321 001112 245679999999998889999999999999999876543 34456677
Q ss_pred eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014433 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd 302 (424)
+..|...|+++.|+|-...++++++.|.+|++||+++... ...+.+|.+.|..++|+|+|+ .+|+.+.||+|++|.
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYE 748 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeC
Confidence 8899999999999998888999999999999999999764 567789999999999999998 699999999999999
Q ss_pred CCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEECC----CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCc
Q 014433 303 LRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLG----RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377 (424)
Q Consensus 303 ~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 377 (424)
.|+..++++.-.+.. ..-..+.|.-+|..++ +.+.| ..|.+||....... +.....+..-. .+
T Consensus 749 Prs~e~pv~Eg~gpvgtRgARi~wacdgr~vi-v~Gfdk~SeRQv~~Y~Aq~l~~~----------pl~t~~lDvap-s~ 816 (1012)
T KOG1445|consen 749 PRSREQPVYEGKGPVGTRGARILWACDGRIVI-VVGFDKSSERQVQMYDAQTLDLR----------PLYTQVLDVAP-SP 816 (1012)
T ss_pred CCCCCCccccCCCCccCcceeEEEEecCcEEE-EecccccchhhhhhhhhhhccCC----------cceeeeecccC-cc
Confidence 998777777655432 3446788999997544 44444 45778877654210 01111111111 11
Q ss_pred ceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 378 SDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 378 ~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
.--.+.+|...++++|-.|..|.+|.+-.
T Consensus 817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 817 LVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ccccccCCCceEEEecCCCceEEEEEecC
Confidence 12235566776888888899999998754
No 178
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.81 E-value=7.6e-21 Score=129.75 Aligned_cols=71 Identities=54% Similarity=0.943 Sum_probs=54.1
Q ss_pred HHHHHhHHhcChhHHHHhhhcCCCCCccEEEEccCCC-CCCCCCCceEEEEEeecCCCCCCCeEEEEEEECC
Q 014433 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRE-EPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP 88 (424)
Q Consensus 18 ~~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~ 88 (424)
+|+|++||+|+|++||+++++.++||||||||+|+.. +..+..+..+++++||+|+++++|+|.|+++.+|
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p 72 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP 72 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence 5789999999999999999999999999999999988 5544345689999999999999999999999887
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=155.52 Aligned_cols=230 Identities=20% Similarity=0.247 Sum_probs=169.5
Q ss_pred EEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCC
Q 014433 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQ 250 (424)
Q Consensus 172 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg 250 (424)
..+.||.+.|++|+|+.+|. +|++||.|-.+.|||.-..+.. ...-.+|...|.++.|-|. +..++++|..|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kll-----hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLL-----HSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhccccceecceeecCCCC-EEeecCCcceEEeecchhccee-----eeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 46889999999999999998 8999999999999999754322 2224589999999999994 456788999999
Q ss_pred eEEEEEcCCCCC-------CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---------
Q 014433 251 YLLIWDLRTPSV-------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--------- 314 (424)
Q Consensus 251 ~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--------- 314 (424)
.|++||+...+. ..+...+..|...|..|+-.|.+++.+.+++.||+|+-+|+|.+..+.....
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 999999985221 2244555678999999999999989999999999999999997543322221
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc-CCCCC---eeeE-EEcCCC-----------CCcc
Q 014433 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA-EDGPP---ELLF-IHGGHT-----------SKIS 378 (424)
Q Consensus 315 ~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~---~~~~-~~~~h~-----------~~v~ 378 (424)
..--...++..+|..+.+||.|+.|-..++||.+........... ...|+ .++. -..+|. ..++
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 112356889999999999999999999999996544322211111 11111 1111 112222 1256
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 379 DFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
-+.|+|+|.-+|++-+.+ .|+++++..+.
T Consensus 278 ~vtfnpNGtElLvs~~gE-hVYlfdvn~~~ 306 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGE-HVYLFDVNEDK 306 (758)
T ss_pred EEEECCCCcEEEEeeCCe-EEEEEeecCCC
Confidence 789999999888887754 59999998763
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=1.6e-17 Score=139.37 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=169.6
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
..++|+|.+|+++.. .+|++..+..|.||..... ..+.+..++..|...|++++|+|..+ .|++|+.|..-
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~-------~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drna 79 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGA-------DLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNA 79 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCC-------CCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCc
Confidence 357999999999887 7999999999999998872 22777889999999999999999887 69999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-CCeeeeeccCCCeeEEEec
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~v~~~ 282 (424)
++|....+ ...++...+..+...++++.|+|.++ .||+|+.-..|.||-....... ...+.-+.+.+.|++++|+
T Consensus 80 yVw~~~~~---~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 80 YVWTQPSG---GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred cccccCCC---CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 99998543 34445555666889999999999875 7889999999999988775532 1112223567889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCC-----C------------CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433 283 PFNEWILATGSTDKTVKLFDLRK-----I------------STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~-----~------------~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
|++- +|++|+.|+..++|..-- . ++.+..+....+.|..+.|+|.|. .|+-.+.|+.+.+-
T Consensus 156 pnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 156 PNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFV 233 (361)
T ss_pred CCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEe
Confidence 9876 899999999999986421 0 122344445568899999999996 69999999999999
Q ss_pred eCCCCC
Q 014433 346 DLSRID 351 (424)
Q Consensus 346 d~~~~~ 351 (424)
|.....
T Consensus 234 da~~p~ 239 (361)
T KOG1523|consen 234 DAAGPS 239 (361)
T ss_pred ecCCCc
Confidence 877643
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=154.76 Aligned_cols=220 Identities=22% Similarity=0.362 Sum_probs=166.1
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCceeEEEecCCC-CceEEEEe
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFK-EGHLLSGS 198 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~~l~s~~ 198 (424)
..+|++.|+|+.|+.+|. +||+|+.|-.+.|||.-. .++... -.+|...|.++.|-|.. ..++++|+
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFE----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchh----------cceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 348999999999999997 999999999999999875 344443 35899999999999963 33688999
Q ss_pred CCCcEEEEeCCCCCCC----CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-------
Q 014433 199 DDAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ------- 267 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~------- 267 (424)
.|..|+++|+...+.. ........+..|...|..|+..|.+++.|-+++.||+|+-+|+|.+....+-.
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 9999999999853321 12234556778999999999999999999999999999999999854322211
Q ss_pred eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-----------------cceEec-CCC-----------C
Q 014433 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-----------------ALHTFD-SHK-----------E 318 (424)
Q Consensus 268 ~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-----------------~~~~~~-~h~-----------~ 318 (424)
.+...--...|+..+|..+++||+|+.|-..++||.|...+ ++.-+. +|- .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 11122235679999999999999999999999999653211 122221 121 1
Q ss_pred CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
.++-+.|+|+|.-+|++-+.+ .|+++|+.....
T Consensus 275 ~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence 256788999998777776655 599999987654
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=152.85 Aligned_cols=248 Identities=15% Similarity=0.186 Sum_probs=183.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 206 (424)
.|+.++|-|+|..+++++ +..+.|||.+. .....++++|...|++++|+.+|+ ++++|+.|..|.+|
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~nd----------G~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSD----------GTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCC----------cccccccccccceEEEEEEccCCc-eeccCCCceeEEEe
Confidence 899999999998777654 45899999987 566788999999999999999998 79999999999999
Q ss_pred eCCCCCCC-----Ccccce------------------------eeeec--CCccEeeEEEecCCCcEEEEEeCCCeEEEE
Q 014433 207 DINAAPKN-----KSLEAM------------------------QIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (424)
Q Consensus 207 d~~~~~~~-----~~~~~~------------------------~~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~ 255 (424)
+..-.... ..+++. +.... ....+.+++|..+|. +++.|-.+|+|.+-
T Consensus 81 ~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 81 TSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIR 159 (1081)
T ss_pred cccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCc-EEEEeccCceEEee
Confidence 86543211 111000 00001 234677888888886 55688899999887
Q ss_pred EcCCCCCCCCeeeeeccCCCeeEEEecCCCC----eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE----WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~----~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 331 (424)
+-.. +....+....+..++|.+++|+|... .++++.....++.+|.+.. +.+..-..-+-...|+.+.++|+
T Consensus 160 Nk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGE- 235 (1081)
T KOG1538|consen 160 NKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGE- 235 (1081)
T ss_pred cCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCc-
Confidence 5433 22233444455778999999999632 2677777788888888763 33333333344567899999997
Q ss_pred EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
++..|+.|+.+++|.-.. ..+.+.......|+.++..|+++ .++.|+.||+|.-|++....
T Consensus 236 y~LiGGsdk~L~~fTR~G---------------vrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRDG---------------VRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEEEccCCCceEEEeecC---------------eEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhHHhH
Confidence 677888899999997543 45666666778999999999999 58889999999999886553
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=2.6e-16 Score=148.92 Aligned_cols=254 Identities=24% Similarity=0.453 Sum_probs=195.2
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEe-cCCCCceEEEE
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSW-SKFKEGHLLSG 197 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~~~l~s~ 197 (424)
....|...+.++.+.+.+. .++.++.++.+.+|+..... .....+.++. ..+..+.+ ++++..+++..
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGE---------KLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCc---------eeEEEEeccCCCceeeEEEECCCcceEEecc
Confidence 3567899999999999886 67777889999999998721 1344555533 36777777 67666345554
Q ss_pred eC-CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-CCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 198 SD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 198 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+. |+.+.+|++... ......+..|...|..++|+|++. .+++++. |+.+++|++.... .+..+..|...
T Consensus 130 ~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 200 (466)
T COG2319 130 SSLDGTVKLWDLSTP-----GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK---PLSTLAGHTDP 200 (466)
T ss_pred CCCCccEEEEEecCC-----CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc---eEEeeccCCCc
Confidence 44 999999999761 134566778999999999999998 4456664 9999999999844 36667779999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
+.+++|+|++..++++++.|+.|++||.+. +..+. .+..|...+ -..|+|++ .++++++.|+.+++|++.....
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-- 275 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS-- 275 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc--
Confidence 999999998874555568999999999885 56666 688888775 44899998 4788999999999999987532
Q ss_pred CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.+....+|...|..+.|+|++. .+++++.|+.+++|+......
T Consensus 276 -----------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 276 -----------LLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred -----------EEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce
Confidence 1222367888999999999888 455588889999998877654
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1e-16 Score=137.06 Aligned_cols=244 Identities=13% Similarity=0.202 Sum_probs=171.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC--cEE
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QIC 204 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~ 204 (424)
.++.+.|+.+.. +|..|+.|| -++|+.... ............|..+-|+. .++|..+.+. .++
T Consensus 7 ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~----------~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lk 71 (391)
T KOG2110|consen 7 TINFIGFNQDST-LLSVGSKDG-YKIFSCSPF----------EKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLK 71 (391)
T ss_pred ceeeeeecccee-EEEccCCCc-eeEEecCch----------HHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEE
Confidence 455566887664 888999887 678887751 11111111223455556654 2566555543 488
Q ss_pred EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 284 (424)
+.+++.... +..+. ...+|.++.++.+ .++ ++-. ..|+|||+++.+....+.....+...+.++++++.
T Consensus 72 v~~~Kk~~~------ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~ 140 (391)
T KOG2110|consen 72 VVHFKKKTT------ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA 140 (391)
T ss_pred EEEcccCce------EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCC
Confidence 888875532 22222 4678999998854 344 4433 45999999997765555555556677888888887
Q ss_pred CCeEEEEEeC-CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe-EEEeeCCCCCcccCCCCcCCC
Q 014433 285 NEWILATGST-DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 285 ~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+.++..-++. .|.|.|||+.+ -+++..+..|++++.+++|+++|. +|||++..|+ ||||.+..+
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G------------ 206 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG------------ 206 (391)
T ss_pred CceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc------------
Confidence 7653333443 58999999998 688999999999999999999995 8999999987 789999876
Q ss_pred CCeeeEEEcCC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433 363 PPELLFIHGGH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 363 ~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 413 (424)
+.++.++.. ...|.+++|+|+++ +|++.|..++|+||++.+...+..+
T Consensus 207 --~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~~~ 256 (391)
T KOG2110|consen 207 --QKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNPPE 256 (391)
T ss_pred --cEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCCCC
Confidence 344444432 23588999999999 6888889999999999988744433
No 185
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.4e-18 Score=140.33 Aligned_cols=199 Identities=12% Similarity=0.214 Sum_probs=151.2
Q ss_pred eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~ 260 (424)
..|+.|++.|. +||+|..||.|.|||+.+.. ..+.+.+|..+|.+++|+++|+.+ ++++.|..|.+||+..+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~------iar~lsaH~~pi~sl~WS~dgr~L-ltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR------IARMLSAHVRPITSLCWSRDGRKL-LTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccc------hhhhhhccccceeEEEecCCCCEe-eeecCCceeEEEeccCC
Confidence 78999999998 89999999999999998764 345567899999999999999865 59999999999999998
Q ss_pred CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC---CCCEEEEEEcCCCCcEEEEEE
Q 014433 261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH---KEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h---~~~v~~~~~sp~~~~~l~s~~ 337 (424)
.. ++.+. ..++|....|+|...+..++.-.+..-.+-++..+...+...... +..-.+..|.+.|+ ++++|.
T Consensus 98 s~---l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGt 172 (405)
T KOG1273|consen 98 SP---LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGT 172 (405)
T ss_pred Cc---eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEec
Confidence 85 44443 478999999999887766666666666666666422211111111 11223346888886 789999
Q ss_pred CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
..|.+.++|..+. +++..++-.. ..|..+.++..|+ +|+.-+.|..|+.|+++.-
T Consensus 173 sKGkllv~~a~t~--------------e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 173 SKGKLLVYDAETL--------------ECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDI 228 (405)
T ss_pred CcceEEEEecchh--------------eeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhh
Confidence 9999999999886 3344433333 5688899999999 5777788999999999743
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=2.3e-19 Score=167.51 Aligned_cols=248 Identities=22% Similarity=0.315 Sum_probs=192.6
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
+.++|..+|+|+.|...|. ++++|+.|..|+||...+ ......+.||.+.|+.++.+.++. ++++++.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et----------~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~ 252 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMET----------ARCLASCRGHSGDITDLAVSSNNT-MIAAASN 252 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccc----------hhhhccCCCCccccchhccchhhh-hhhhccc
Confidence 3457999999999999885 899999999999999877 566778999999999999998666 7999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC-CCCCCCCeeeeeccCCCeeE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR-TPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~ 278 (424)
|..|++|.+..+ .++..+.+|++.|++|+|+|-. +.+.||++++||.+ ......+...-......+.+
T Consensus 253 D~vIrvWrl~~~------~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 253 DKVIRVWRLPDG------APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred CceEEEEecCCC------chHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 999999999877 4567788999999999999853 77899999999998 21110000000122456777
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+.|...+. -++||+.|+.-..|.+... ..+...+.-+.++.+...+.+++-.+-.+++|++..+
T Consensus 322 ~~~~~~~~-~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-------- 385 (1113)
T KOG0644|consen 322 ILFENNGD-RFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-------- 385 (1113)
T ss_pred eecccccc-ccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeecccc--------
Confidence 88888777 4889999998888765431 1223333333343344356777778888999999886
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 412 (424)
.+.....+|...++.+.++|-.+.+..+++.||...|||+..+.-...
T Consensus 386 ------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 386 ------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred ------hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 556777899999999999999887778999999999999998865443
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.9e-16 Score=149.41 Aligned_cols=268 Identities=15% Similarity=0.202 Sum_probs=183.9
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.-.+++.+++|.+. ++|+|..||.|.+|.--... ........+.-|..+|.+++|+++|. +|++|+..|.
T Consensus 203 ~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~V 274 (792)
T KOG1963|consen 203 HHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGV 274 (792)
T ss_pred hhcccceeEEeccccc-eEEEeccCCcEEEEeccccc------cccccceEEEecccccceeEEecCCc-eEeecccceE
Confidence 4677799999999885 89999999999999854411 12233456777999999999999998 7999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec--------cCC
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--------HQS 274 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~ 274 (424)
+.+|.+.++++ . .+..-.++|..+.++|++. +.+....|..|.+....+......+..+.. ..+
T Consensus 275 Lv~Wq~~T~~k--q-----fLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 275 LVLWQLETGKK--Q-----FLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred EEEEeecCCCc--c-----cccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 99999998752 1 2334578999999999987 556778899999987754332211221111 233
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc---------------------------------------------
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--------------------------------------------- 309 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--------------------------------------------- 309 (424)
-.+.++++|.-+ .++-.+..|.|.+||+-+....
T Consensus 347 l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~ 425 (792)
T KOG1963|consen 347 LTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNF 425 (792)
T ss_pred cceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhc
Confidence 455667777333 3555566677777776432100
Q ss_pred ----------------------ceEecCCCCCEEEEEEcCCCCc-EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433 310 ----------------------LHTFDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL 366 (424)
Q Consensus 310 ----------------------~~~~~~h~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 366 (424)
......|...+...++.+..+. .+++++.||.++||-+.......... ....+
T Consensus 426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~----s~W~c 501 (792)
T KOG1963|consen 426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS----SNWTC 501 (792)
T ss_pred cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc----cceEE
Confidence 0111246665556655544333 78899999999999996544332221 12244
Q ss_pred eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC-ccCCCCC
Q 014433 367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE-NIYHDED 413 (424)
Q Consensus 367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~~~~ 413 (424)
.....-|..+++.++|+.||. +++.+.|++|.+||..+ ..+....
T Consensus 502 ~~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 502 KAIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDTKNELLCTE 547 (792)
T ss_pred eeeeccccCcccchhhcCCCc--EEEEecCCEEEEecCCChhhhhccc
Confidence 444445888999999999998 44557799999999998 5544433
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.6e-17 Score=141.52 Aligned_cols=198 Identities=16% Similarity=0.276 Sum_probs=147.1
Q ss_pred eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 182 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
..++|+.+|. .+++|+.||++|+|+.... ..+.....|...|.++.|+|++. ++++.+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~------~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSM------LTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcc------hhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc
Confidence 6799999888 7999999999999996433 23334456899999999999997 55688888 99999999985
Q ss_pred CCCCeeeee--ccCCCeeEEEecCCC---Ce-EEEEEeCCCcEEEEECCCCCC----cceEecCCCCCEEEEEEcCCCCc
Q 014433 262 VSKPVQSVV--AHQSEVNCLAFNPFN---EW-ILATGSTDKTVKLFDLRKIST----ALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 262 ~~~~~~~~~--~~~~~v~~v~~~~~~---~~-~l~tg~~dg~i~iwd~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~ 331 (424)
. +.... ..+.....+.|..++ .. +++.-..-+.|+.||+..... +..+...-...|++++.+++|+
T Consensus 219 ~---~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk- 294 (398)
T KOG0771|consen 219 A---LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK- 294 (398)
T ss_pred h---hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-
Confidence 3 32221 223345566676655 22 233333456777777654322 2222223345899999999996
Q ss_pred EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
++|.|+.||.|.|++....+ .+.+..+.|...|+.+.|+|+.++ +++.+.|....|..+.-
T Consensus 295 f~AlGT~dGsVai~~~~~lq-------------~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQ-------------RLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeccCCcEEEEEeceee-------------eeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence 89999999999999998764 455666789999999999999995 77788899999988876
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1e-17 Score=149.49 Aligned_cols=209 Identities=17% Similarity=0.215 Sum_probs=162.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 219 (424)
.++.++.||.+.|.+-.. +....+.+|.+.+.+-.|+|+|.+ |++++.||.|++|.-...-
T Consensus 77 ~~~i~s~DGkf~il~k~~-----------rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSrsGML------- 137 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-----------RVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSRSGML------- 137 (737)
T ss_pred eEEEEcCCceEEEecccc-----------hhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEeccchH-------
Confidence 577778999999988654 444567889999999999999995 9999999999999864321
Q ss_pred eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~ 299 (424)
...+.....+|.|++|.|+...++.+. .+.+.|=-+.... .+...++|.+-|.++.|++... ++++|+.|-..+
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK 211 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANS---KIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK 211 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccc---ceeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence 111223567899999999998877553 4566666665533 3667889999999999999887 899999999999
Q ss_pred EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD 379 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 379 (424)
+||-. +.++..-..|..+|++++|.|+. +++.++.. ++++ . ....+.|..
T Consensus 212 vWD~~--G~~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R~---~----------------------~p~~GSifn 261 (737)
T KOG1524|consen 212 IWDAQ--GANLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TARF---S----------------------SPRVGSIFN 261 (737)
T ss_pred eeccc--CcccccCChhccceeeeeecccc--ceeeeeee-eeee---c----------------------CCCccceEE
Confidence 99976 68888888999999999999993 46565543 3431 1 123456999
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 380 FSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
++|++||. .+++|...|.+.+=-.
T Consensus 262 lsWS~DGT-Q~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 262 LSWSADGT-QATCGTSTGQLIVAYA 285 (737)
T ss_pred EEEcCCCc-eeeccccCceEEEeee
Confidence 99999999 5888888887765433
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.2e-18 Score=148.79 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=195.9
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceeEEEecCCC-CceEEEEeC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFK-EGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~~~l~s~~~ 199 (424)
-.|.+.|+.|.|+..|. .+++|+.|..|.+||... ..+.. -..+|...|..-.|.|.. ..-+++++.
T Consensus 139 ~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~----------~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVS----------GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred cCCCCccceeeecccCc-eeeccCccceEEeehhhc----------cCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 36999999999999886 899999999999999987 23333 345798889888898863 335999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC---Ce
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS---EV 276 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v 276 (424)
||.+++=.+-...... ....+..|.++|..++.-|+.++-|.+++.|+.+.-+|+++......+..-..+.. ..
T Consensus 208 dgqvr~s~i~~t~~~e---~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVE---NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred cCceeeeeecccccee---cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence 9999987765443322 22335569999999999999999999999999999999998764333333333344 57
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc-----ceEecCC------CCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-----LHTFDSH------KEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-----~~~~~~h------~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
.+++.+|.+.+.+|+|+.|-.+++||.|...+. +..+..| .-.|++++++.++.-+|++-. |-.|++|
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF 363 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLF 363 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEe
Confidence 899999999999999999999999999864322 3333322 347999999987766676655 4458888
Q ss_pred eCCCCCcccCCCCcCCCCCeeeEEEcCCCC--CcceEEe-CCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTS--KISDFSW-NPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~-~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.-..+ ....+.......+.....++||.+ .|..+-| -|... ++++|++-|.|.||+-.++.+
T Consensus 364 ~~~~~-~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 364 NKSMG-DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred ccccc-cCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHH
Confidence 43322 111111101011222334788864 4666665 57777 699999999999999988743
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=7.3e-17 Score=156.84 Aligned_cols=284 Identities=12% Similarity=0.189 Sum_probs=188.6
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
..+.....|...|..++.++....++++|+.||+|++|+..+..... +..+...++..-...+.++...+.+. .+|
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~-~~A 1114 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMCGNGD-QFA 1114 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEeccCCC-eEE
Confidence 34455667999999999999775699999999999999998743332 12233344444567888999988787 699
Q ss_pred EEeCCCcEEEEeCCCCCCC-CcccceeeeecC-CccEee-EEEecCCC-cEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433 196 SGSDDAQICLWDINAAPKN-KSLEAMQIFKVH-EGVVED-VAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~-~~~v~~-~~~~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.++.||.|++.+++..... ......+....+ .+.+.+ -++..... .+++.+...+.|..||++.......++. ..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QL 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-Cc
Confidence 9999999999999873211 111112222222 233333 34433333 3777888999999999998664322322 22
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCC--cEEEEEE--CCCeEEEee
Q 014433 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNE--TILASCC--LGRRLMVWD 346 (424)
Q Consensus 272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~--~~l~s~~--~dg~i~iwd 346 (424)
..+.|++++.+|.+. .+++|+..|.+.+||+|- +.++..+. .+..++..+..+|-.+ ...++++ ..+.|.+|+
T Consensus 1194 ~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cccceeEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 347899999999888 699999999999999996 66766655 4557888888887554 4444444 467899999
Q ss_pred CCCCCcccCCCCcCCCCCeeeEEEc------CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 347 LSRIDEEQTPEDAEDGPPELLFIHG------GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
+.++.+.+........+ .+-.... .+.-......+..-+. ++.+|+.|..|+.||.....
T Consensus 1272 ~~~g~~~~vl~~s~~~p-~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAP-ILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cccCcceEEEEcCCCCc-chhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcc
Confidence 99987655443331111 1111000 1121222233333334 78999999999999997653
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=9.8e-17 Score=153.77 Aligned_cols=258 Identities=19% Similarity=0.284 Sum_probs=179.1
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CCCceeEEEecC-CCCceEEEEeCCC
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HSTEGYGLSWSK-FKEGHLLSGSDDA 201 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~-~~~~~l~s~~~dg 201 (424)
.+...+.|+|-.+ .++++...-.|+|||.+.. .....+.. ....|+.+.+-. +...++++|+.||
T Consensus 1065 ~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~----------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP-QIAAADDRERIRVWDWEKG----------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred CCCceeeecCCCc-eeEEcCCcceEEEEecccC----------ceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence 3567788999877 6777776779999999872 22222222 234678887643 3445899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeee---cC----CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccC
Q 014433 202 QICLWDINAAPKNKSLEAMQIFK---VH----EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQ 273 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~---~~----~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~ 273 (424)
.|+||+--.... ...+.+..+. ++ .+.-.-+.|.....+++ ++|.-..|+|||...... +..+ .+..
T Consensus 1134 vIRIwk~y~~~~-~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~---~~diP~~s~ 1208 (1387)
T KOG1517|consen 1134 VIRIWKDYADKW-KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQV---VADIPYGSS 1208 (1387)
T ss_pred eEEEeccccccc-CCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEeccccee---EeecccCCC
Confidence 999997544321 1111111111 11 11113456777777777 445578999999987654 2222 2345
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--cceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
..|+++.-+..+.+++++|..||.|++||.|.... .+.....|+.. |..+.+.+.|-.-|++|+.||.|++||++.
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 67888877666656999999999999999997543 67788888887 999999997755599999999999999998
Q ss_pred CCcccCCCCcCCCCCeeeEEEcCC---CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433 350 IDEEQTPEDAEDGPPELLFIHGGH---TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 413 (424)
.... .......| .+.++++..|++.+ ++|||+. +.|+||++....++...
T Consensus 1289 ~~~e------------~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1289 SSKE------------TFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred Cccc------------ccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccc
Confidence 4211 11111222 22589999999999 8999887 99999999988765443
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=3.3e-15 Score=141.37 Aligned_cols=247 Identities=27% Similarity=0.468 Sum_probs=186.0
Q ss_pred CceeEEEe-cCCCCcEEEE-EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-CCc
Q 014433 126 GEVNRARY-MPQNPFLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DAQ 202 (424)
Q Consensus 126 ~~v~~~~~-~p~~~~~lat-g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~ 202 (424)
..+..+.+ ++++..+++. +..++.+.+|+... .......+..|...|..++|+|++. .+++++. |+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~ 179 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST---------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGT 179 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC---------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCc
Confidence 36777777 7777634444 34499999999875 1244667888999999999999988 6888875 999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-eeeccCCCeeEEEe
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAF 281 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~ 281 (424)
+++|++... ..+..+..|...|.+++|+|++..++++++.|+.|++||.+.+.. +. .+..|.... ...|
T Consensus 180 ~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~-~~~~ 249 (466)
T COG2319 180 IKLWDLRTG------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL---LRSTLSGHSDSV-VSSF 249 (466)
T ss_pred eEEEEcCCC------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE---EeeecCCCCcce-eEeE
Confidence 999999863 245556669999999999998875665668999999998885442 33 466677665 4489
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|++. ++++++.|+.+++||++.....+..+..|...|.++.|+|++. .+++++.|+.+.+|++.....
T Consensus 250 ~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~--------- 318 (466)
T COG2319 250 SPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL--------- 318 (466)
T ss_pred CCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce---------
Confidence 99885 6789999999999999975443445567889999999999776 466688888899998876432
Q ss_pred CCCeeeEE--EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 362 GPPELLFI--HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 362 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
... ...|...+..+.|.+++..+..++..|+.+.+|++....
T Consensus 319 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 319 -----LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred -----EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 222 246777789999943324344444688999999998876
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=1.5e-17 Score=143.68 Aligned_cols=213 Identities=21% Similarity=0.318 Sum_probs=161.2
Q ss_pred CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC---cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK---SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 253 (424)
...++..+.|.++..+.|++|+.|..|++|.++...... .+..+..+..|...|+.+.|+|++. ++|+|+++|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 346799999999887789999999999999998765543 5566677888999999999999996 789999999999
Q ss_pred EEEcC--------C-----CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCE
Q 014433 254 IWDLR--------T-----PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEV 320 (424)
Q Consensus 254 i~d~~--------~-----~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v 320 (424)
+|-.. + .+.......+.+|...|..++|+|++. ++++|+.|.++++||++. +.....+..|...|
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYV 168 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecc-ceeEeecccccccc
Confidence 99776 2 111222345567999999999999998 699999999999999998 88999999999999
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC------C-cCCCCCeeeEEEcC--CCCCcceEEeCCCCCcEEE
Q 014433 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE------D-AEDGPPELLFIHGG--HTSKISDFSWNPCEDWVIS 391 (424)
Q Consensus 321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~-~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~ 391 (424)
..++|.|.++ ++++-+.|...+++.+......+... . ...........+.. -......++|+|+|. +++
T Consensus 169 qgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llv 246 (434)
T KOG1009|consen 169 QGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLV 246 (434)
T ss_pred ceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEE
Confidence 9999999985 68888888877777765443222111 0 01111122222211 123456789999998 666
Q ss_pred EEe
Q 014433 392 SVA 394 (424)
Q Consensus 392 s~~ 394 (424)
+.+
T Consensus 247 tPa 249 (434)
T KOG1009|consen 247 TPA 249 (434)
T ss_pred ccc
Confidence 643
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8e-16 Score=124.43 Aligned_cols=251 Identities=17% Similarity=0.220 Sum_probs=170.4
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cC-----CCceeEE
Q 014433 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GH-----STEGYGL 184 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l 184 (424)
+.++..++....|.++|+.++|.. .+|.+|+ ||.|+=|......+... .++...++ -| --+|+++
T Consensus 49 ~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~----~K~lwe~~~P~~~~~~evPeINam 120 (325)
T KOG0649|consen 49 PPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLA----TKRLWEVKIPMQVDAVEVPEINAM 120 (325)
T ss_pred CCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhcc----chhhhhhcCccccCcccCCcccee
Confidence 456777788889999999999983 3566665 59999999876322111 11111111 12 2368899
Q ss_pred EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (424)
Q Consensus 185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~ 264 (424)
...|.... ++.++.|+.++-||++++ +..+.+++|++.|.++.--.....+| +|+.||++++||+++.+..+
T Consensus 121 ~ldP~enS-i~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 121 WLDPSENS-ILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred EeccCCCc-EEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeE
Confidence 99998775 666668999999999988 45677899999999999855555565 99999999999999987633
Q ss_pred Ceeeee------cc-CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE
Q 014433 265 PVQSVV------AH-QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 265 ~~~~~~------~~-~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~ 337 (424)
.+...+ .| ...|.+++-+ .. .|++|+ ...+.+|.+|. .++...+.. ..+|..+.|..+ .+++++
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~--ed-WlvCGg-Gp~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d---~vl~~G 263 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVN--ED-WLVCGG-GPKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD---CVLIGG 263 (325)
T ss_pred EeccccChhhcCcccCceeEEEecc--Cc-eEEecC-CCceeEEeccC-CCceEEEec-ccceeEeeeecc---eEEEec
Confidence 222221 11 2346666655 34 365554 56799999998 677777764 678888889764 477788
Q ss_pred CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433 338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 402 (424)
..+.|.-|.+.. .+...........++..|+-+--.+|..++..+.+.|+
T Consensus 264 ~g~~v~~~~l~G---------------vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 264 EGNHVQSYTLNG---------------VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cccceeeeeecc---------------EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 888899998864 33333333333345555654433356666666667665
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=2.3e-15 Score=137.89 Aligned_cols=242 Identities=14% Similarity=0.154 Sum_probs=155.8
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE-EeCCCcEEEEeCCCCCCCCccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS-GSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~ 218 (424)
++++...++.|++|++... +.......+. +.+....++++|+++ +|++ +..++.|.+|+++.... +.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~-------g~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~---l~ 71 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHE-------GALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGA---LT 71 (330)
T ss_pred EEEEcCCCCCEEEEEECCC-------CceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCc---eE
Confidence 4555577899999999641 1122333443 345677899999988 4554 45688999999973211 11
Q ss_pred ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc
Q 014433 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT 297 (424)
Q Consensus 219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~ 297 (424)
...... .......++++|+++.++++...++.|.+|++..... ...+... .+.....+++++|++++++++...++.
T Consensus 72 ~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 72 FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCE
Confidence 122111 2335678999999998887776799999999975332 1222222 233456788999999987777778899
Q ss_pred EEEEECCCCCCcc------eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc
Q 014433 298 VKLFDLRKISTAL------HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371 (424)
Q Consensus 298 i~iwd~~~~~~~~------~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (424)
|.+||+.+.+... .... .......++|+|+++.++++...++.|.+|++...... ...+....
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~----------~~~~~~~~ 218 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE----------IECVQTLD 218 (330)
T ss_pred EEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC----------EEEEEEEe
Confidence 9999998633221 1111 23456789999999754455455899999999742110 01111111
Q ss_pred C------CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 372 G------HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 372 ~------h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
. +......+.++|++++++++...++.|.+|++..
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 1 1122346889999996555545688999999964
No 197
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.74 E-value=1.6e-16 Score=131.86 Aligned_cols=260 Identities=18% Similarity=0.204 Sum_probs=185.3
Q ss_pred CceeEEEecC---CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 126 GEVNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 126 ~~v~~~~~~p---~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
..++.+.|.- ++...++-+..+|.|.+|.......... ..++....-......++.|++.+.. ++++..+|.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~----L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~ 144 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH----LRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGS 144 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeee----ecccchhhhhheeeeEEEeeccCce-EEEEcCCCc
Confidence 3556666653 3433667778889999999876221111 1111111111113568899998884 888889999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
+.+-+... ..++..+.++.|.-+++...|+...++++.+|++|+.+..||+|.++. ......+.|...|.+|.-+
T Consensus 145 ~~~v~~t~----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss 219 (339)
T KOG0280|consen 145 ISGVYETE----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSS 219 (339)
T ss_pred EEEEecce----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecC
Confidence 98555433 233445578889999999999999999999999999999999996552 2233356789999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc-EEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
|..++.++||+.|-.|++||.|+.++|+..-.. .+.|+.+.++|.-.. +|+++-..| .+|-+.+....+.
T Consensus 220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~------- 290 (339)
T KOG0280|consen 220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEF------- 290 (339)
T ss_pred CCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccch-------
Confidence 988889999999999999999998999877664 589999999996543 355555555 8888887654321
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEE-EEecCCc
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQ-IWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~-vw~~~~~ 407 (424)
...+..+..|.+-.+.-.|..... +|+|++ .|+.++ +|-.-++
T Consensus 291 --~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 291 --QIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred --heeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccC
Confidence 135666778888888888855544 677765 677755 8865443
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.8e-17 Score=140.93 Aligned_cols=202 Identities=17% Similarity=0.185 Sum_probs=153.2
Q ss_pred eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 208 (424)
.+++|+++|. .+|+|+.||++|||+... .........|..+|.+|.|+|+++ +|++-+.| ..+||++
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps----------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~ 214 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPS----------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSV 214 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCc----------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEe
Confidence 6789999886 899999999999999876 455667778999999999999998 79999999 9999999
Q ss_pred CCCCCCCcccceeeeecCCccEeeEEEecCC---C-cEEEEEeCCCeEEEEEcCCCCCCC--CeeeeeccCCCeeEEEec
Q 014433 209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH---E-YLFGSVGDDQYLLIWDLRTPSVSK--PVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~~~~s~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~v~~~ 282 (424)
+++.......+ ..-......+.|+.++ . .+++....-+.|+.||+....... +......-...|++++.+
T Consensus 215 ~~g~~~a~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 215 NTGAALARKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred ccCchhhhcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 98844332221 1123345667777654 2 233334456678888776433211 111222234579999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
++|+ ++|.|+.||.|.|++..+.......-+.|...|+.+.|+|+.+ .+++.+.|..+.|..+..
T Consensus 291 ~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 DDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEee
Confidence 9998 7999999999999999986666666678999999999999986 688899999999888765
No 199
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.5e-17 Score=146.13 Aligned_cols=204 Identities=18% Similarity=0.282 Sum_probs=162.5
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
+...+.|...|+.+.|+..|. +||+... ...|.|+++.. ...+..++...+.|.++.|+|... +|
T Consensus 514 v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK----------~~sQ~PF~kskG~vq~v~FHPs~p-~l 581 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSK----------RKSQSPFRKSKGLVQRVKFHPSKP-YL 581 (733)
T ss_pred eEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccc----------ccccCchhhcCCceeEEEecCCCc-eE
Confidence 556789999999999999997 6776554 35899999987 222334555667799999999887 56
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
++++. ..|+|||+.... .++.+......|..++.+|.|.++| .|+.|+.+..||+.-.. ++.+++..|..
T Consensus 582 fVaTq-~~vRiYdL~kqe------lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlss--kPyk~lr~H~~ 651 (733)
T KOG0650|consen 582 FVATQ-RSVRIYDLSKQE------LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSS--KPYKTLRLHEK 651 (733)
T ss_pred EEEec-cceEEEehhHHH------HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCc--chhHHhhhhhh
Confidence 66654 689999997642 2333444567899999999999887 78999999999998654 47888889999
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCC--------CCCcceEecCCCCC----EEEEEEcCCCCcEEEEEECCCeE
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRK--------ISTALHTFDSHKEE----VFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~--------~~~~~~~~~~h~~~----v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
.+++|+||+.-+ +|++|+.||++.||--+- .-.|+..+.+|... |..+.|+|..+ .|++++.||+|
T Consensus 652 avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~ti 729 (733)
T KOG0650|consen 652 AVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTI 729 (733)
T ss_pred hhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceE
Confidence 999999999877 899999999999985331 12367788888765 99999999998 58899999999
Q ss_pred EEe
Q 014433 343 MVW 345 (424)
Q Consensus 343 ~iw 345 (424)
++|
T Consensus 730 rlf 732 (733)
T KOG0650|consen 730 RLF 732 (733)
T ss_pred Eee
Confidence 998
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=4.3e-16 Score=139.28 Aligned_cols=254 Identities=20% Similarity=0.288 Sum_probs=176.2
Q ss_pred EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEec-----CCCCceEEEEeCCCcEE
Q 014433 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS-----KFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s~~~dg~i~ 204 (424)
...++-.+..++.- ....+++|+..... ....++....-......|-+|+ +.+- -|+.|-.-|.|+
T Consensus 128 ~~~~~~~gd~lcFn--vg~~lyv~~~~g~~------~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq 198 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFN--VGRELYVYSYRGAA------DLSKPIDKREYKGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQ 198 (636)
T ss_pred eccccCCCCEEEEe--cCCeEEEEEccCcc------hhccchhhhcccCCCCceecccccccCCCCc-ceEEeeccCceE
Confidence 33444455543332 23468888887411 1122222211122223334442 3333 377888889999
Q ss_pred EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC-----------------------
Q 014433 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS----------------------- 261 (424)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~----------------------- 261 (424)
+.|.......+-+. ......+..|+++.|-|.++.+|+++-.+|.+++||.....
T Consensus 199 ~idp~~~~~sklfn--e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 199 LIDPINFEVSKLFN--EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred EecchhhHHHHhhh--hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence 99876522111010 00111347899999999999999999999999999864210
Q ss_pred --CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433 262 --VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 262 --~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
...|+..+....+.|+.++|+|+|+ +||+.+.||.++|||..+ .+.+..++.-=+...|++|||||+ ++++|+.|
T Consensus 277 k~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGED 353 (636)
T KOG2394|consen 277 KKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGED 353 (636)
T ss_pred cccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCcc-EEEecCCc
Confidence 0023333333456889999999998 599999999999999997 566666665567899999999997 79999999
Q ss_pred CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC-----------------------------------
Q 014433 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP----------------------------------- 384 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----------------------------------- 384 (424)
..|.||.+... +++..-+||.++|+.|+|.|
T Consensus 354 DLVtVwSf~er--------------RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 354 DLVTVWSFEER--------------RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred ceEEEEEeccc--------------eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 99999999764 67888899999999999983
Q ss_pred C------------CCcEEEEEeCCCcEEEEecCCccCCC
Q 014433 385 C------------EDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 385 ~------------~~~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
. -.|.|.+.+.|-.+.+||+....+..
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0 14668899999999999999887766
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=141.96 Aligned_cols=266 Identities=18% Similarity=0.286 Sum_probs=183.6
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC------------CCCCCCc------EEEe
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL------------DGACSPD------LRLR 175 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~------------~~~~~~~------~~~~ 175 (424)
.++++++.+.|+...+.|..+|+|++++|||...-.|++||+......... ....... ..+.
T Consensus 40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 467788889999999999999999999999999999999999864332210 0001111 1111
Q ss_pred cCC-----------CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEE
Q 014433 176 GHS-----------TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG 244 (424)
Q Consensus 176 ~h~-----------~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 244 (424)
-|. .....++++.-... |++++....|+=++++.+.. +..+....+.++++..++.+. ||+
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrf------L~P~~~~~~~lN~v~in~~hg-Lla 191 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRF------LNPFETDSGELNVVSINEEHG-LLA 191 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEcccccc------ccccccccccceeeeecCccc-eEE
Confidence 121 12345555554443 55555566788889988743 333444568999999999875 888
Q ss_pred EEeCCCeEEEEEcCCCCCCCCeee---eeccCC-----CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC
Q 014433 245 SVGDDQYLLIWDLRTPSVSKPVQS---VVAHQS-----EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH 316 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~-----~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h 316 (424)
+|+.+|.|-.||.|.......+.. +..|.. .|+++.|+.+|- .+++|+.+|.|.|||+|.....+..-...
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCC
Confidence 999999999999998664222211 122333 499999998876 69999999999999999843333333444
Q ss_pred CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433 317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED 396 (424)
Q Consensus 317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 396 (424)
.-+|..+.|.+.+..--+.......++|||-.++.. .... .....++++++-|++. ++.++.++
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~--------------~asi-Ept~~lND~C~~p~sG-m~f~Ane~ 334 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP--------------MASI-EPTSDLNDFCFVPGSG-MFFTANES 334 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCCc--------------eeec-cccCCcCceeeecCCc-eEEEecCC
Confidence 568999999876433233344456799999887642 2222 2244599999999888 78888888
Q ss_pred CcEEEEec
Q 014433 397 NILQIWQM 404 (424)
Q Consensus 397 g~i~vw~~ 404 (424)
+.+..|=+
T Consensus 335 ~~m~~yyi 342 (703)
T KOG2321|consen 335 SKMHTYYI 342 (703)
T ss_pred CcceeEEc
Confidence 87766544
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=6.2e-16 Score=129.89 Aligned_cols=226 Identities=13% Similarity=0.256 Sum_probs=175.6
Q ss_pred EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (424)
Q Consensus 174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 253 (424)
+.--..+|+|.+|++++. .+|.+-....|.||.....+ ..+....+..|...|+.|.|+|..+.+ ++|+.|..-+
T Consensus 6 ~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~---~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~drnay 80 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGAD---LWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHDRNAY 80 (361)
T ss_pred eeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCC---CceeceehhhhCcceeEEeecCCCCce-eEccCCCCcc
Confidence 334457899999999988 59999999999999987653 235667788899999999999998765 5999999999
Q ss_pred EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC---cceEecCCCCCEEEEEEcCCCC
Q 014433 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~sp~~~ 330 (424)
||....+...++...+..+...+++|.|+|... .||+|+....|.||-+..... ..+.-+.+.+.|+++.|+|++-
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 999977666778778888999999999999776 699999999999998765211 2233445688999999999984
Q ss_pred cEEEEEECCCeEEEeeCCCCCcccCC----CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 331 TILASCCLGRRLMVWDLSRIDEEQTP----EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
+|++|+.|+.++||..--....... ......-.+++..+....+.|.++.|+|+|. .|+=.+.|..+.+=|...
T Consensus 160 -LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 160 -LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred -eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCC
Confidence 8999999999999976432211111 1111111244555555677899999999999 688889999999988766
Q ss_pred c
Q 014433 407 N 407 (424)
Q Consensus 407 ~ 407 (424)
.
T Consensus 238 p 238 (361)
T KOG1523|consen 238 P 238 (361)
T ss_pred C
Confidence 5
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.1e-15 Score=129.95 Aligned_cols=256 Identities=15% Similarity=0.169 Sum_probs=185.4
Q ss_pred cCCceeEEEecCCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 124 HDGEVNRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
-...|..++|.-++..-+..+. .+..+..+.+....-.. .............+|.++.... ..|++|-.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s----~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS----SLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGN 126 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccc----ccccccccccccccccchhhcC---CEEEEEecCCc
Confidence 3446667777765543344443 56667766666521111 0111123445566777777642 35999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC--CeEEEEEcCCCCCCCCeeeeec---------
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVA--------- 271 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~i~d~~~~~~~~~~~~~~~--------- 271 (424)
+.+|....+.... ..+..+.. ...+..+.-++..++++|+|+.. ..+.|||+.+... +..-+.
T Consensus 127 l~~~~~k~~d~hs--s~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q---iw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 127 LQVRHDKSGDLHS--SKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ---IWSAKNVPNDRLGLR 200 (412)
T ss_pred EEEEeccCCcccc--ccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeeccccee---eeeccCCCCccccce
Confidence 9999998654221 12222332 35677888888889999999998 8899999988632 222111
Q ss_pred cCCCeeEEEecCC-CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 272 HQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 272 ~~~~v~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
-.-.++.+.|-+. -.+.||+++.-+.+++||.+...+|+..+..-..+|+++...|.+. ++++|..-|.+..||++.+
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheecccCc
Confidence 1224567788764 1457999999999999999998899999999999999999999995 7899999999999999986
Q ss_pred CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
. .+...+.+-.+.|+++..+|.++ +++++|-|..|||+|+.+.
T Consensus 280 k-------------l~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 280 K-------------LLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred e-------------eeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 3 22233778889999999999999 7999999999999999984
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=140.43 Aligned_cols=248 Identities=17% Similarity=0.270 Sum_probs=167.7
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEe-CCCCCCCC-CCCCCCCCcEEEecCCCceeEEEec-CCCCceE
Q 014433 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFD-YSKHPSKP-PLDGACSPDLRLRGHSTEGYGLSWS-KFKEGHL 194 (424)
Q Consensus 118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~-~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l 194 (424)
+.++-.|..-|.|+.|+.... ++.+ +.|..+.+|. +.....+. .......+. .-|.. ...-- ..+...|
T Consensus 7 ~~~k~r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt---~~h~~---~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 7 ICKKNRNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPT---DMHLG---GRSSGGGKGSDTL 78 (737)
T ss_pred hhhccccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCCcccCCc---ccccc---ccccCCCCCcceE
Confidence 334446777778999998665 4444 4566666655 43311110 000000000 00110 00000 0122368
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
+.++.||.+.+.+-... .......|.+.+.+-.|+|+|.-++ +++.||.|++|.-...- ..++.....
T Consensus 79 ~i~s~DGkf~il~k~~r-------VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGML----RStl~Q~~~ 146 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR-------VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGML----RSTVVQNEE 146 (737)
T ss_pred EEEcCCceEEEecccch-------hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchH----HHHHhhcCc
Confidence 99999999999875432 2344567999999999999998665 99999999999854321 122234577
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
+|+|++|.|+.+.++.+.+ +.+.|=.+.. ...+..+++|.+-|.++.|++... ++++|+.|-..+|||-..
T Consensus 147 ~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G----- 217 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG--GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG----- 217 (737)
T ss_pred eeEEEEECCCCCceEEecC--CeEEEeeccc-ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC-----
Confidence 8999999999988776654 5677777765 455667889999999999999985 899999999999999764
Q ss_pred CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
..++....|..+|++++|+|+ . +++.++. +++++=.++.|
T Consensus 218 ----------~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~G 257 (737)
T KOG1524|consen 218 ----------ANLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVG 257 (737)
T ss_pred ----------cccccCChhccceeeeeeccc-c-ceeeeee-eeeeecCCCcc
Confidence 667888899999999999999 4 4666553 45665444444
No 205
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=4.4e-16 Score=140.03 Aligned_cols=221 Identities=19% Similarity=0.217 Sum_probs=155.8
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
.+...-+|.++|.|+++.+.+. .+.+|+.||+|+.|++..................+.||.+.|+.+++++... .|++
T Consensus 336 pi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Lls 413 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLS 413 (577)
T ss_pred eeEEEecccCceEEEEecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceee
Confidence 3455568999999999999886 7999999999999988732111111222344567889999999999999777 6999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-----
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----- 271 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----- 271 (424)
++.||++++|+...... ..+. ... -.+...++.+-.....+.++...-+.-.++++.... .+..+..
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~---~~~-e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s---~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFG---EPK-EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS---DLLIFESSASPG 485 (577)
T ss_pred ecCCceEEeeccCCcCc-cccC---Ccc-ccCCcceEeeccchhHhhhhhcccccccchhhhhhh---heeeccccCCCc
Confidence 99999999999865532 1111 111 122334455443332222222223333333333322 2222211
Q ss_pred --cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 272 --HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 272 --~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
....++-+.++|.+. +.+++..|+.|+++|..+ +.+++....|...++++++.|+|. +|++++.|+.+++|.+..
T Consensus 486 ~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccccCccceEEecCCCC-eeEecccCCceecccccc-cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence 124577889999887 788999999999999998 899999999999999999999997 799999999999999865
Q ss_pred C
Q 014433 350 I 350 (424)
Q Consensus 350 ~ 350 (424)
.
T Consensus 563 k 563 (577)
T KOG0642|consen 563 K 563 (577)
T ss_pred h
Confidence 3
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=3.2e-15 Score=141.30 Aligned_cols=213 Identities=15% Similarity=0.131 Sum_probs=143.2
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeee
Q 014433 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIF 223 (424)
Q Consensus 147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 223 (424)
+..|++||... .....+..|...+.+.+|+|++. .|+.++.+ ..|++||+.++.. ..+..+
T Consensus 183 ~~~i~i~d~dg-----------~~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~----~~l~~~ 246 (429)
T PRK01742 183 PYEVRVADYDG-----------FNQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGAR----KVVASF 246 (429)
T ss_pred eEEEEEECCCC-----------CCceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCce----EEEecC
Confidence 46899999876 12345677888899999999998 56665543 4699999976532 112222
Q ss_pred ecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEE
Q 014433 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF 301 (424)
Q Consensus 224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iw 301 (424)
.+ ....++|+|+++.++.+.+.+|.+.|| |+.++. ...+..+...+....|+|+|+.+++++..+|...||
T Consensus 247 ~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 247 RG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred CC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence 22 344689999998777666678876655 555433 344555667788999999999766666678888999
Q ss_pred ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE
Q 014433 302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381 (424)
Q Consensus 302 d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 381 (424)
++...+.....+ .+.. ....|+|+++ .|+..+.++ +.+||+..+.. ..+ ...+ ....+.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~------------~~l--t~~~--~~~~~~ 378 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGST------------EVL--SSTF--LDESPS 378 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCe------------EEe--cCCC--CCCCce
Confidence 876533333333 3333 4678999997 465666565 66699876532 111 1111 235678
Q ss_pred eCCCCCcEEEEEeCCCcEEEEec
Q 014433 382 WNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 382 ~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
|+|+++ +|+.++.++...+|.+
T Consensus 379 ~sPdG~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 379 ISPNGI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred ECCCCC-EEEEEEcCCCceEEEE
Confidence 999999 5777777888887775
No 207
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=1.4e-13 Score=126.24 Aligned_cols=304 Identities=12% Similarity=0.174 Sum_probs=198.4
Q ss_pred EEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEe
Q 014433 66 MILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT 145 (424)
Q Consensus 66 ~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~ 145 (424)
+++|+++. +..+.|++.+++- ..+++.......-......++++|++..+.++..
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d~------------------------~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e 56 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFDE------------------------ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNE 56 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEET------------------------TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEET
T ss_pred EEEEcCCC-CCCCcEEEEEEcC------------------------CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEc
Confidence 67899887 4557788887731 2456777777777778888999999886555544
Q ss_pred ---CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceee
Q 014433 146 ---VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI 222 (424)
Q Consensus 146 ---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 222 (424)
..|.|..|.+.... +....+............++.+|++..++++...+|.|.++++..............
T Consensus 57 ~~~~~g~v~~~~i~~~~------g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 57 GSGDSGGVSSYRIDPDT------GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp TSSTTTEEEEEEEETTT------TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE
T ss_pred cccCCCCEEEEEECCCc------ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc
Confidence 36899999988621 122333344434455678999999985444445699999999987522211111111
Q ss_pred ee--------cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeee-eccCCCeeEEEecCCCCeEEEEE
Q 014433 223 FK--------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSV-VAHQSEVNCLAFNPFNEWILATG 292 (424)
Q Consensus 223 ~~--------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg 292 (424)
.. .......++.++|+++.++++.-....|.+|++..... ..+...+ .......+.++|+|++++++++.
T Consensus 131 ~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 131 HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence 10 12345788999999998887776777899999987552 1111222 23456788999999999878888
Q ss_pred eCCCcEEEEECCCC-CC--cceEecC------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433 293 STDKTVKLFDLRKI-ST--ALHTFDS------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 293 ~~dg~i~iwd~~~~-~~--~~~~~~~------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
-.++.|.+|++... +. .+..+.. .......|+++|+++.++++....+.|.+|++.... +.
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----------g~ 280 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----------GT 280 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----------TT
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----------Cc
Confidence 88999999999831 21 1222211 122678999999998777777778899999994321 11
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC--CccCC
Q 014433 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA--ENIYH 410 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~--~~~~~ 410 (424)
...+............++++|++++++++...++.|.+|++. ++.+.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 133333333334478999999999877777788899999874 55443
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.7e-15 Score=125.01 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=161.3
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
.-.+..++|++. -..+|++..|-.|++|+-.. .....++ .....|++++|-|.+...|+.|+. +-|
T Consensus 98 ~~dlr~~aWhqH-~~~fava~nddvVriy~kss-----------t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gI 164 (445)
T KOG2139|consen 98 EIDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-----------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGI 164 (445)
T ss_pred hcceeeEeechh-hhhhhhhccCcEEEEeccCC-----------CCCceecchhhcceeEEEeccCCcceeeeeec-cee
Confidence 456788999984 34688899999999999765 1112233 244679999999998877888776 558
Q ss_pred EEEeCCCCCCCCc------ccc--eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 204 CLWDINAAPKNKS------LEA--MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 204 ~iwd~~~~~~~~~------~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
++|.......... ... +....+| .+|++++|++++..++-+.-.|..|.|||..++.. .++. ....+.
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~--~~glgg 240 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLI--PKGLGG 240 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-cccc--ccCCCc
Confidence 8998754322111 011 1122334 68999999999986654445788899999999874 2333 234567
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
+.-+.|+|++.+ |.++.-|+..++|.............+ .+.|...+|+|.|+.+|.+++..- ++|.+....+...
T Consensus 241 ~slLkwSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 241 FSLLKWSPDGDV-LFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSV 316 (445)
T ss_pred eeeEEEcCCCCE-EEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCcc
Confidence 889999999996 666778999999966553443333333 559999999999998888877654 4455443332221
Q ss_pred CCCcCCC-CCeeeEEE------cC---CCCCcceEEeCCCCCcEEEEE
Q 014433 356 PEDAEDG-PPELLFIH------GG---HTSKISDFSWNPCEDWVISSV 393 (424)
Q Consensus 356 ~~~~~~~-~~~~~~~~------~~---h~~~v~~~~~~~~~~~~l~s~ 393 (424)
....... ...++..+ .+ -.+.+.+++|.|.|.|+.++-
T Consensus 317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 1111100 00111111 11 135678899999999754443
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=6.7e-15 Score=139.08 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=144.1
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..|...+...+|+|+++. ||..+.+ ..|++||+.+ +....+..+.+| ...++|+|++..++++.+
T Consensus 200 t~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~t--------g~~~~l~~~~g~---~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRS--------GARKVVASFRGH---NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred ccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCC--------CceEEEecCCCc---cCceeECCCCCEEEEEEe
Confidence 356778999999999985 5554432 4799999876 111222223333 346899999984344445
Q ss_pred CCCcEEEE--eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 199 DDAQICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 199 ~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
.+|.+.|| |+.++. ...+..+...+....|+|+++.++.++..+|...||++...... ...+ .+..
T Consensus 268 ~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--~~~l-~~~~-- 335 (429)
T PRK01742 268 KDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--ASLV-GGRG-- 335 (429)
T ss_pred cCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEe-cCCC--
Confidence 78876666 554331 23344466678899999999877766667888899987653321 2222 3333
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.+.+|+|+++. |+.++.++ +.+||+.+ +........ ....++.|+|+++ +|+.++.++.+.+|++....
T Consensus 336 ~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~-g~~~~lt~~--~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~----- 404 (429)
T PRK01742 336 YSAQISADGKT-LVMINGDN-VVKQDLTS-GSTEVLSST--FLDESPSISPNGI-MIIYSSTQGLGKVLQLVSAD----- 404 (429)
T ss_pred CCccCCCCCCE-EEEEcCCC-EEEEECCC-CCeEEecCC--CCCCCceECCCCC-EEEEEEcCCCceEEEEEECC-----
Confidence 46789999995 55555554 66699987 333222122 2335688999997 67777788888888764311
Q ss_pred CCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 357 EDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
......+.+|.+.+...+|+|-
T Consensus 405 -------G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 -------GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -------CCceEEccCCCCCCCCcccCCC
Confidence 1345556677888899999985
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=2.7e-16 Score=138.15 Aligned_cols=231 Identities=16% Similarity=0.270 Sum_probs=176.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 206 (424)
....+.|..+|. .++.|+..|.|..+|..+ ......+. -...|.++.|..+.. +||++ ....+.||
T Consensus 131 GPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t----------~~L~~Ei~-v~Etv~Dv~~LHneq-~~AVA-QK~y~yvY 196 (545)
T KOG1272|consen 131 GPYHLDYTRNGR-HLLLGGRKGHLAAFDWVT----------KKLHFEIN-VMETVRDVTFLHNEQ-FFAVA-QKKYVYVY 196 (545)
T ss_pred CCeeeeecCCcc-EEEecCCccceeeeeccc----------ceeeeeee-hhhhhhhhhhhcchH-HHHhh-hhceEEEe
Confidence 345688999887 566788899999999987 23222332 345788999987655 56555 55789999
Q ss_pred eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC
Q 014433 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE 286 (424)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 286 (424)
|-... . +..+.. ...|..+.|.|.. +||++++..|.++.-|+.+++. +..+....+.+..++-+|.+.
T Consensus 197 D~~Gt----E---lHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl---Va~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 197 DNNGT----E---LHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL---VASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred cCCCc----E---Eeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhh---hHHHHccCCccchhhcCCccc
Confidence 96532 1 222332 3578999999986 6889999999999999999886 555555678889999999887
Q ss_pred eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433 287 WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL 366 (424)
Q Consensus 287 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 366 (424)
++-+|...|+|.+|.... ..|+..+..|.++|.+|++.+.|. ++||++.|..++|||++.... +
T Consensus 265 -Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~q-------------l 328 (545)
T KOG1272|consen 265 -VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQ-------------L 328 (545)
T ss_pred -eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccc-------------c
Confidence 799999999999999987 788888999999999999999995 899999999999999998642 2
Q ss_pred eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
..... ..+...+++|..| +||. |....|.||.=
T Consensus 329 ~t~~t--p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~d 361 (545)
T KOG1272|consen 329 HTYRT--PHPASNLSLSQKG--LLAL-SYGDHVQIWKD 361 (545)
T ss_pred ceeec--CCCcccccccccc--ceee-ecCCeeeeehh
Confidence 22222 2346778888665 4554 45567999964
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=123.91 Aligned_cols=165 Identities=19% Similarity=0.310 Sum_probs=124.2
Q ss_pred CceeEEEecCC-CCc-eEEEEeCCCcEEEEeCCCCCCCCc----ccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433 179 TEGYGLSWSKF-KEG-HLLSGSDDAQICLWDINAAPKNKS----LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (424)
Q Consensus 179 ~~v~~l~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 252 (424)
+.+.+..|... +.. +|++|..+|.+.+||+.++...-. .+.......|..+|.++.+.+.-..= ++|+.+..+
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isgga~dkl 229 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISGGADDKL 229 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCCCccccc
Confidence 45666664332 222 467788999999999988633211 12233455699999999998754433 378888889
Q ss_pred EEEEcCCCCCCCCee-eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433 253 LIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 253 ~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 331 (424)
..|.+......-++. ......-.|..+..-|+++ ++||++.|+.|+||..|+ ..++..+..|+..|++++|+|+.+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~- 306 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCE- 306 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCc-
Confidence 999987643211221 1222344688889999998 899999999999999999 689999999999999999999975
Q ss_pred EEEEEECCCeEEEeeC
Q 014433 332 ILASCCLGRRLMVWDL 347 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~ 347 (424)
++|+++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 8999999999999986
No 212
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.5e-12 Score=112.10 Aligned_cols=299 Identities=12% Similarity=0.168 Sum_probs=196.4
Q ss_pred EEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEE
Q 014433 64 QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT 143 (424)
Q Consensus 64 ~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lat 143 (424)
+.+++||+|... ..-|+++.+.-+ .+++...++..+.+.++-|+|+|+++.+.+.
T Consensus 3 ~~~YiGtyT~~~-s~gI~v~~ld~~------------------------~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v 57 (346)
T COG2706 3 QTVYIGTYTKRE-SQGIYVFNLDTK------------------------TGELSLLQLVAELGNPTYLAVNPDQRHLYVV 57 (346)
T ss_pred eEEEEeeecccC-CCceEEEEEeCc------------------------ccccchhhhccccCCCceEEECCCCCEEEEE
Confidence 678899998553 456787777422 3456666777888899999999988755554
Q ss_pred EeC--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE-eCCCcEEEEeCCCCCCCCcccce
Q 014433 144 KTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-SDDAQICLWDINAAPKNKSLEAM 220 (424)
Q Consensus 144 g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 220 (424)
... .|.|..|.++.... ....+........+.+.++.+++++ +++++ ...|.|.++-++...... ..
T Consensus 58 ~~~~~~ggvaay~iD~~~G------~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~---~~ 127 (346)
T COG2706 58 NEPGEEGGVAAYRIDPDDG------RLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQ---PV 127 (346)
T ss_pred EecCCcCcEEEEEEcCCCC------eEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccc---cc
Confidence 444 68888888876211 1111111122223347899999998 45555 457899999997753322 12
Q ss_pred eeeecCCcc----------EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEE
Q 014433 221 QIFKVHEGV----------VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290 (424)
Q Consensus 221 ~~~~~~~~~----------v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 290 (424)
.....|.+. +....+.|++++++++.-.--.|.+|++..+.........-......+.|.|+|+++...+
T Consensus 128 v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~ 207 (346)
T COG2706 128 VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYL 207 (346)
T ss_pred eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEE
Confidence 122234444 8889999999887766555567999999966532111111234567899999999997666
Q ss_pred EEeCCCcEEEEECCCCCCcceEecC---------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 291 TGSTDKTVKLFDLRKISTALHTFDS---------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 291 tg~~dg~i~iwd~~~~~~~~~~~~~---------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+.--+++|.+|........+..++. .......|..+|+|+.+.|+--....|.+|.+.....
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g--------- 278 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG--------- 278 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC---------
Confidence 6777999999998874333333332 2456788999999985444444455788888865321
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...++.....+...-.++.+++.+++|+++.-.+..|.+|.....
T Consensus 279 -~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 279 -KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred -EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 113333344445557899999999976666666677999987643
No 213
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.4e-15 Score=128.63 Aligned_cols=175 Identities=15% Similarity=0.227 Sum_probs=137.6
Q ss_pred cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCC
Q 014433 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d 249 (424)
...+.+|.+.|.+|.|+.++. +|++|+.|..+++|++...-..+.-+++.... .|.+.|.|++|...+..+ .+|+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~-~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL-YSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE-ecCCCc
Confidence 345778999999999999876 89999999999999997654433334555444 355899999999877655 599999
Q ss_pred CeEEEEEcCCCCCCCCeeee--eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEE
Q 014433 250 QYLLIWDLRTPSVSKPVQSV--VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGW 325 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~ 325 (424)
++|.+.|+.+.+. +..+ ....+.|+.+..+|... +|++.+.++.|.+||.|....++..+. ........+.|
T Consensus 127 ~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 127 GTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred ceeEeeeccccee---eeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 9999999998664 3332 22345899999999865 799999999999999997443444433 23456788999
Q ss_pred cCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 326 NPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+|..+.+|++.+..+-+.+||++...
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred cCCCceeEEeccccCCCCceeecccc
Confidence 99999999999999999999998654
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.9e-13 Score=115.42 Aligned_cols=188 Identities=17% Similarity=0.301 Sum_probs=138.2
Q ss_pred EEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc
Q 014433 140 LIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL 217 (424)
Q Consensus 140 ~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 217 (424)
++|..+.+ ..+++++..+ ...+..+. ...+|.++.++.+ .|+++-.+ .|+|||++..+...++
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk----------~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKK----------KTTICEIF-FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTI 122 (391)
T ss_pred eeEEEecCCCceEEEEEccc----------CceEEEEe-cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhh
Confidence 55554443 3588888876 22233333 5678999998752 57777665 4999999876443332
Q ss_pred cceeeeecCCccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC
Q 014433 218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK 296 (424)
Q Consensus 218 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg 296 (424)
.....+...+.++++++.+.++..-++ ..|.|.+||+.+ .+++..+.+|++.+-|++|+++|. +|||++..|
T Consensus 123 ---~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~-llATASeKG 195 (391)
T KOG2110|consen 123 ---ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGT-LLATASEKG 195 (391)
T ss_pred ---hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCC-EEEEeccCc
Confidence 223345566777777766655543333 468999999988 446888889999999999999998 899999999
Q ss_pred c-EEEEECCCCCCcceEecCC--CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 297 T-VKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 297 ~-i~iwd~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+ ||||.+.+ ++.+..|.-. ...|.+++|+|+++ +|++.+..++|+||.+....
T Consensus 196 TVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 196 TVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 6 89999988 6777777632 34689999999996 89999999999999997654
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.1e-13 Score=116.47 Aligned_cols=238 Identities=13% Similarity=0.213 Sum_probs=155.4
Q ss_pred EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE-EEeCC------Cc
Q 014433 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL-SGSDD------AQ 202 (424)
Q Consensus 130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~d------g~ 202 (424)
.++|+.|.. .+++|..+| .+||+++.... ........-.-.+..+-|- .++|+ +|+.+ ..
T Consensus 10 svs~NQD~S-cFava~~~G-friyn~~P~ke--------~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNk 76 (346)
T KOG2111|consen 10 SVSFNQDHS-CFAVATDTG-FRIYNCDPFKE--------SASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNK 76 (346)
T ss_pred EEEEccCCc-eEEEEecCc-eEEEecCchhh--------hhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCce
Confidence 489998775 788877666 89999876111 0011111111122222232 12333 33332 46
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--eccCCCeeEEE
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVNCLA 280 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~v~ 280 (424)
|.|||=... .++..+. ...+|.++.+.++. ++ +. ..+.|+||...+.- +.++.+ ......+.+++
T Consensus 77 viIWDD~k~------~~i~el~-f~~~I~~V~l~r~r--iV-vv-l~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 77 VIIWDDLKE------RCIIELS-FNSEIKAVKLRRDR--IV-VV-LENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred EEEEecccC------cEEEEEE-eccceeeEEEcCCe--EE-EE-ecCeEEEEEcCCCh--hheeeeecccCCCceEeec
Confidence 999993222 2233333 56789999998752 43 33 46889999987322 123332 22234466665
Q ss_pred ecCCCCeEEEE-EeCCCcEEEEECCCCCC-cceEecCCCCCEEEEEEcCCCCcEEEEEECCCe-EEEeeCCCCCcccCCC
Q 014433 281 FNPFNEWILAT-GSTDKTVKLFDLRKIST-ALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQTPE 357 (424)
Q Consensus 281 ~~~~~~~~l~t-g~~dg~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~ 357 (424)
-+.... +||. |..-|.|.|-|+..... +...+.+|.+.|.+++.+.+| .++||+|..|+ |||||..++..
T Consensus 144 ~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~----- 216 (346)
T KOG2111|consen 144 PTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTL----- 216 (346)
T ss_pred CCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcE-----
Confidence 554444 4544 55679999999987433 467889999999999999999 58999999997 89999998743
Q ss_pred CcCCCCCeeeEEEc-C-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 358 DAEDGPPELLFIHG-G-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 358 ~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
+..++ | ....|.+++|+|+.. +|+++|+-|+|+|+.+......
T Consensus 217 ---------l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 217 ---------LQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred ---------eeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCC
Confidence 33322 2 245699999999999 6888899999999999876543
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.7e-13 Score=116.06 Aligned_cols=210 Identities=16% Similarity=0.269 Sum_probs=140.1
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC----CCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP----LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
-+..|+|++|-|.+..-||.|+.. -|.||..+...+... .......+..-.+| ..|+++.|+++|. .+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeeccc
Confidence 457899999999887789998865 599999876332221 01111223333455 6899999999998 5777664
Q ss_pred -CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 200 -DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 200 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
|..|.|||+.++.... +. ....+.++-+.|+|++..+| ++..|+..++|........ .......+.|..
T Consensus 216 gsssi~iWdpdtg~~~p----L~--~~glgg~slLkwSPdgd~lf-aAt~davfrlw~e~q~wt~---erw~lgsgrvqt 285 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIP----LI--PKGLGGFSLLKWSPDGDVLF-AATCDAVFRLWQENQSWTK---ERWILGSGRVQT 285 (445)
T ss_pred CcceEEEEcCCCCCccc----cc--ccCCCceeeEEEcCCCCEEE-Eecccceeeeehhccccee---cceeccCCceee
Confidence 7789999999885532 11 12356788999999998777 6778999999976554321 122223558999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------ceEe-----cC----CCCCEEEEEEcCCCCcEEEE
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTA--------------LHTF-----DS----HKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--------------~~~~-----~~----h~~~v~~~~~sp~~~~~l~s 335 (424)
.+|+|.|+++|.+.+..- ++|.+.-.+++ +..+ .. -.+.+.+++|.|.|. +||+
T Consensus 286 acWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav 362 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAV 362 (445)
T ss_pred eeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEE
Confidence 999999998888876544 44444321111 0000 11 146789999999997 5666
Q ss_pred EECCC--------eEEEeeCCC
Q 014433 336 CCLGR--------RLMVWDLSR 349 (424)
Q Consensus 336 ~~~dg--------~i~iwd~~~ 349 (424)
.-..+ .|.+||.+.
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEcCCchhhhhhhhhhhhcccc
Confidence 54433 256677765
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.9e-13 Score=128.44 Aligned_cols=221 Identities=11% Similarity=0.111 Sum_probs=145.7
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeee
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|... .....+..|...+.+.+|+|+|+ .|+..+. +..|.+||+.++.. ..+.
T Consensus 182 ~~l~~~d~dg-----------~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~-------~~l~ 242 (435)
T PRK05137 182 KRLAIMDQDG-----------ANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQR-------ELVG 242 (435)
T ss_pred eEEEEECCCC-----------CCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcE-------EEee
Confidence 4788888765 33455677888999999999998 4655542 46899999977632 2233
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEE
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKL 300 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~i 300 (424)
.+.+.+...+|+|+++.++++.+.++. |++||+.++. ...+..+........|+|+++.++++...+| .|++
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 455677889999999988777776665 7777887754 3344455666778999999996554443444 5778
Q ss_pred EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
+|+.. .....+..+...+....|+|+|+.++++.... ..|.+||+..... ..+ . .+ ..+.
T Consensus 319 ~d~~g--~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~------------~~l-t-~~--~~~~ 380 (435)
T PRK05137 319 MNADG--SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE------------RIL-T-SG--FLVE 380 (435)
T ss_pred EECCC--CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce------------Eec-c-CC--CCCC
Confidence 88764 23344444455677889999997544444333 3577788754221 111 1 11 2367
Q ss_pred eEEeCCCCCcEEEEEeCC-----CcEEEEecCCccC
Q 014433 379 DFSWNPCEDWVISSVAED-----NILQIWQMAENIY 409 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~~ 409 (424)
...|+|+|+.+++++... ..|.+.++..+..
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 889999999655555433 2577778766543
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=3.1e-14 Score=118.59 Aligned_cols=160 Identities=19% Similarity=0.450 Sum_probs=112.1
Q ss_pred eeEEEecCCCcEEEEEeC---------CCeEEEEEcCCCCCCCCeeeeec-cCCCeeEEEecCCCCeEEEE-EeCCCcEE
Q 014433 231 EDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWILAT-GSTDKTVK 299 (424)
Q Consensus 231 ~~~~~~~~~~~~~~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~t-g~~dg~i~ 299 (424)
..+.|++.|..+++.... -|...+|.++.... +...+.. ..++|.+++|+|++..++++ |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 467899999888766652 24466666655443 2333322 34579999999999865433 45678999
Q ss_pred EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC---CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC
Q 014433 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL---GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK 376 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 376 (424)
+||++ ..++..+. ...++.+.|+|+|+ +|++++. .|.|.+||++.. ..+.... | ..
T Consensus 87 lyd~~--~~~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~--------------~~i~~~~-~-~~ 145 (194)
T PF08662_consen 87 LYDVK--GKKIFSFG--TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK--------------KKISTFE-H-SD 145 (194)
T ss_pred EEcCc--ccEeEeec--CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC--------------EEeeccc-c-Cc
Confidence 99997 46666664 56788999999997 5666654 467999999864 3333332 3 34
Q ss_pred cceEEeCCCCCcEEEEEe-----CCCcEEEEecCCccCCCCC
Q 014433 377 ISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYHDED 413 (424)
Q Consensus 377 v~~~~~~~~~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~ 413 (424)
++.++|+|+|++++.+++ .|+.++||++....+....
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 789999999997665554 3899999999877665544
No 219
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=4.1e-15 Score=137.79 Aligned_cols=271 Identities=21% Similarity=0.386 Sum_probs=199.7
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC--ceeEEEecCCC--CceEEE
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST--EGYGLSWSKFK--EGHLLS 196 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~--~~~l~s 196 (424)
.+.-.+.+.++..+|.|+. +|.++.-| +++-|+... ..+-.-+. |.. .|-.+.|+|.. +..+++
T Consensus 20 sl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p---------~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDP---------FTPPRWLH-HITPWQVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred EEEecCcccceeeccccch-hhhhhhcC-eEEEeccCC---------CCCceeee-ccCcchhcceecccCCCCceeEEe
Confidence 4456788999999998875 66666655 666787762 22222232 333 46678888763 323444
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
.+ ...-.+|++..... .. .-..+.+|...|+++.|+|+.+.++++++.|..+..||++++.. ++.....-....
T Consensus 88 ts-~qkaiiwnlA~ss~-~a--Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 88 TS-NQKAIIWNLAKSSS-NA--IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAA 161 (1081)
T ss_pred cC-cchhhhhhhhcCCc-cc--eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccC
Confidence 44 44556899875433 11 22346689999999999999999999999999999999999764 666666666778
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
..|+|+...+.++| .+....|.+||+|..+.++..+++|-..|+.++|...-...+.+++.|++|++||......+...
T Consensus 162 sqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred ceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 89999988887554 45667899999999899999999999999999998766567889999999999998764322100
Q ss_pred CCc--------------------------------------C---CCCCeeeEEEcCCCCCcceEEeCCCC---------
Q 014433 357 EDA--------------------------------------E---DGPPELLFIHGGHTSKISDFSWNPCE--------- 386 (424)
Q Consensus 357 ~~~--------------------------------------~---~~~~~~~~~~~~h~~~v~~~~~~~~~--------- 386 (424)
... + -..+..+..+.||...|..+.|-..+
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence 000 0 01245678888999999888885432
Q ss_pred CcEEEEEeCCCcEEEEecCCccCC
Q 014433 387 DWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 387 ~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
.+.|+|-+.|..+++|-+...+++
T Consensus 321 dfQLVTWSkD~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDSQIQR 344 (1081)
T ss_pred ceeEEEeecCCceEeeeccHHHHH
Confidence 357999999999999999988664
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=7.1e-13 Score=125.06 Aligned_cols=219 Identities=11% Similarity=0.074 Sum_probs=138.8
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe---CCCcEEEEeCCCCCCCCcccceeeee
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---DDAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|.+. .....+..+...+.+.+|+|+|+. |+..+ .+..|.+|++.++.. ..+..
T Consensus 179 ~~l~~~d~dg-----------~~~~~lt~~~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~----~~l~~-- 240 (429)
T PRK03629 179 YELRVSDYDG-----------YNQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAV----RQVAS-- 240 (429)
T ss_pred eeEEEEcCCC-----------CCCEEeecCCCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCe----EEccC--
Confidence 3788888875 223445556778999999999984 55433 245799999976532 11122
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEE-
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF- 301 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iw- 301 (424)
..+.+...+|+|+++.++.+.+.+| .|++||+.++. +..+..+...+....|+|+|+.++++...++...||
T Consensus 241 -~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 241 -FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred -CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 2334557899999998876656555 48889998765 333444455678899999999655555445555555
Q ss_pred -ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433 302 -DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 302 -d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
|+.. + ....+..+........|+|+|+.+++++..++ .|.+||+..+.. . .+... ....
T Consensus 316 ~d~~~-g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------------~---~Lt~~-~~~~ 377 (429)
T PRK03629 316 VNING-G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------Q---VLTDT-FLDE 377 (429)
T ss_pred EECCC-C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe------------E---EeCCC-CCCC
Confidence 5554 2 33444444455678999999986544444443 478888876431 1 11111 1235
Q ss_pred eEEeCCCCCcEEEEEeCCCc---EEEEecCCcc
Q 014433 379 DFSWNPCEDWVISSVAEDNI---LQIWQMAENI 408 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~dg~---i~vw~~~~~~ 408 (424)
...|+|+|+. |+.++.++. +.++++....
T Consensus 378 ~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 378 TPSIAPNGTM-VIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CceECCCCCE-EEEEEcCCCceEEEEEECCCCC
Confidence 6789999995 555554543 6777876543
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.5e-13 Score=128.31 Aligned_cols=219 Identities=13% Similarity=0.106 Sum_probs=135.7
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-C--CcEEEEeCCCCCCCCcccceeeee
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-D--AQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|... .....+..+...+.+.+|+|++. .|+..+. + ..|.+||+.++.. ..+.
T Consensus 176 ~~L~~~D~dG-----------~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~-------~~l~ 236 (427)
T PRK02889 176 YQLQISDADG-----------QNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR-------RVVA 236 (427)
T ss_pred cEEEEECCCC-----------CCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE-------EEee
Confidence 4577777644 22344556778899999999998 4665543 2 3599999987632 1122
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~ 304 (424)
...+.+...+|+|+++.++++.+.+|...||.+..... ....+..+........|+|+|+.+++++..+|...||.+.
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 23445678999999988876778888766665542211 1334444555567789999999765555555666777654
Q ss_pred CCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC-C--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE
Q 014433 305 KISTALHTFDSHKEEVFQVGWNPKNETILASCCLG-R--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381 (424)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 381 (424)
..+.....+..+.......+|+|+|+. ++..+.+ + .|.+||+..+.. ..+ .. ........
T Consensus 315 ~~~g~~~~lt~~g~~~~~~~~SpDG~~-Ia~~s~~~g~~~I~v~d~~~g~~------------~~l---t~-~~~~~~p~ 377 (427)
T PRK02889 315 ASGGAAQRVTFTGSYNTSPRISPDGKL-LAYISRVGGAFKLYVQDLATGQV------------TAL---TD-TTRDESPS 377 (427)
T ss_pred CCCCceEEEecCCCCcCceEECCCCCE-EEEEEccCCcEEEEEEECCCCCe------------EEc---cC-CCCccCce
Confidence 322222333223334456899999975 5444443 3 699999876432 111 11 12346789
Q ss_pred eCCCCCcEEEEEeCCCc--EEEEec
Q 014433 382 WNPCEDWVISSVAEDNI--LQIWQM 404 (424)
Q Consensus 382 ~~~~~~~~l~s~~~dg~--i~vw~~ 404 (424)
|+|+++.++++....|. +.+-++
T Consensus 378 ~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 378 FAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred ECCCCCEEEEEEecCCCEEEEEEEC
Confidence 99999976666655554 444444
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=133.58 Aligned_cols=204 Identities=17% Similarity=0.327 Sum_probs=156.9
Q ss_pred ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.|..++|-|+|..++++++ ..+.+||.+.+. .+..+++|.+.|.+++|+.+|. .||+|+.|..|.+|..+-
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~------llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGT------LLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcc------cccccccccceEEEEEEccCCc-eeccCCCceeEEEecccc
Confidence 7899999999997555543 579999999884 4566789999999999999997 789999999999998765
Q ss_pred CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
... +. ..|...|.|+.|+|-.. .|++++-. ..-+|.... +.+...+ ....+.+++|..+|. +|+.|-.+
T Consensus 85 EG~---Lk--YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~q--K~V~K~k-ss~R~~~CsWtnDGq-ylalG~~n 153 (1081)
T KOG1538|consen 85 EGI---LK--YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQ--KSVSKHK-SSSRIICCSWTNDGQ-YLALGMFN 153 (1081)
T ss_pred cce---ee--eccCCeeeEeecCchHH-Hhhhcchh-hccccChhh--hhHHhhh-hheeEEEeeecCCCc-EEEEeccC
Confidence 442 22 26899999999999876 58787653 467887664 3333333 256889999999995 89999999
Q ss_pred CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC----CcEEEEEeCCCcEEEEecCCccCCCCCCC
Q 014433 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE----DWVISSVAEDNILQIWQMAENIYHDEDDL 415 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 415 (424)
|+|.|-+-... +...+....|.+++|++++|+|.. ..+++......++.++.++......+...
T Consensus 154 GTIsiRNk~gE------------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L 221 (1081)
T KOG1538|consen 154 GTISIRNKNGE------------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL 221 (1081)
T ss_pred ceEEeecCCCC------------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC
Confidence 99998743321 113344456778899999999963 23788889999999999988877654443
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.4e-15 Score=130.02 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=190.6
Q ss_pred eccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 122 INHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
-+|...|....|.|. +..-+++++.||.|++=.+... +.......+..|.+.|.-++.-|..+.-|.+++.|
T Consensus 182 SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t-------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 182 SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET-------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred cccccchhhhhccCCCCCcCceeccccCceeeeeeccc-------cceecceecccccCccceeeecCCCCCcccccccc
Confidence 368888888889884 3346889999999999777651 23343556778999999999999988889999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCc---cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC---CCeeee-----
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEG---VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---KPVQSV----- 269 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~---~~~~~~----- 269 (424)
+.+.-+|++.......+. .-..+.. ...+++.+|.+.+.|++++.|..+++||.+.-... ..+..+
T Consensus 255 ~~v~~~Dlr~~~pa~~~~---cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl 331 (559)
T KOG1334|consen 255 AVVFHIDLRQDVPAEKFV---CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL 331 (559)
T ss_pred cceeeeeeccCCccceee---eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc
Confidence 999999998775433332 1222333 67899999999999999999999999999863211 111111
Q ss_pred -eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC-C----------Ccce-EecCCCC--CEEEEEEc-CCCCcEE
Q 014433 270 -VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-S----------TALH-TFDSHKE--EVFQVGWN-PKNETIL 333 (424)
Q Consensus 270 -~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~----------~~~~-~~~~h~~--~v~~~~~s-p~~~~~l 333 (424)
......|++++|+.++.-+||+ -.|-.|++|.-... + ..+. .+++|.. .|..+-|- |... ++
T Consensus 332 ~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yV 409 (559)
T KOG1334|consen 332 VEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YV 409 (559)
T ss_pred cccCcccceeEEecCCccceeee-ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eE
Confidence 1234569999999777755554 55778999943221 1 1122 3677764 57777664 5554 79
Q ss_pred EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
++|+.=|.|.||+-.++ +++..+.+-...|+++.=+|.-+ +|||+|-|..|+||...+.
T Consensus 410 vSGSDCGhIFiW~K~t~--------------eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTG--------------EIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred EecCccceEEEEecchh--------------HHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCcc
Confidence 99999999999998875 45555566566899999999999 8999999999999998543
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.7e-13 Score=128.51 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=141.5
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeee
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.+||... .....+..+...+.+.+|+|++. .|+.++. +..|.+||+.++.. ..+.
T Consensus 184 ~~l~i~D~~g-----------~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~-------~~l~ 244 (433)
T PRK04922 184 YALQVADSDG-----------YNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR-------ELVA 244 (433)
T ss_pred EEEEEECCCC-----------CCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE-------EEec
Confidence 4688898765 22345666777899999999998 5666553 34699999976532 1122
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc--EEE
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT--VKL 300 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~--i~i 300 (424)
...+.....+|+|+++.++++.+.+| .|++||+.++. +..+..+.......+|+|+++.++++...+|. |++
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 23444567899999998876766666 59999998765 33344455556788999999965555545555 666
Q ss_pred EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
+|+.. +. ...+..+.......+|+|+|+.++++...++ .|.+||+..+.. . .+. +.....
T Consensus 321 ~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------------~---~Lt-~~~~~~ 382 (433)
T PRK04922 321 VAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------------R---TLT-PGSLDE 382 (433)
T ss_pred EECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------------E---ECC-CCCCCC
Confidence 66655 22 3333333344557899999985444443333 589999876421 1 111 122345
Q ss_pred eEEeCCCCCcEEEEEeCC--CcEEEEecCCcc
Q 014433 379 DFSWNPCEDWVISSVAED--NILQIWQMAENI 408 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d--g~i~vw~~~~~~ 408 (424)
...|+|+|+.++++.... +.|.++++..+.
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 679999999655555433 357777776543
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=129.28 Aligned_cols=196 Identities=17% Similarity=0.306 Sum_probs=146.0
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE--EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC----
Q 014433 141 IATKTVSAEVYVFDYSKHPSKPPLDGACSPDL--RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---- 214 (424)
Q Consensus 141 latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---- 214 (424)
+..|-..|.|++.|..... ...+. ...-.+..|+++.|-|.+...++++-.+|.+.++|.......
T Consensus 188 llIGf~tGqvq~idp~~~~--------~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE--------VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred eEEeeccCceEEecchhhH--------HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 5557778888888865410 00000 011134789999999988888899999999999976432100
Q ss_pred ------------------CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 215 ------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 215 ------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
..-.++..+..-.+.|+.++|+|++++ +|+.+.||.++|||..+... +..++..-+..
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eL---lg~mkSYFGGL 335 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQEL---LGVMKSYFGGL 335 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHH---HHHHHhhccce
Confidence 000222333334568999999999874 57999999999999998664 44444556789
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC----------------------------
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK---------------------------- 328 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~---------------------------- 328 (424)
.|++|+|||+ +|++|+.|--|.||.+.. ++.+..-++|++.|+.++|.|-
T Consensus 336 LCvcWSPDGK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~ 413 (636)
T KOG2394|consen 336 LCVCWSPDGK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA 413 (636)
T ss_pred EEEEEcCCcc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence 9999999999 599999999999999997 7889999999999999999831
Q ss_pred -------C------------CcEEEEEECCCeEEEeeCCCC
Q 014433 329 -------N------------ETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 329 -------~------------~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+ .+.|.+.+.|-.+.+||+...
T Consensus 414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred CCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 0 135788889999999999643
No 226
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3e-13 Score=128.14 Aligned_cols=259 Identities=15% Similarity=0.177 Sum_probs=187.0
Q ss_pred eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC--ceEEEEeCCCcEEEE
Q 014433 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE--GHLLSGSDDAQICLW 206 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~iw 206 (424)
..-.|+++++.+++. ....|.||...+ ...+..+.+|..++..+.+.|... .++.+++.+|.|++|
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~T----------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTAT----------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecch----------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 345788888755554 356899999988 555678999999999999998766 467799999999999
Q ss_pred eCCCCCCCCcc---------------------------------------------------------------------
Q 014433 207 DINAAPKNKSL--------------------------------------------------------------------- 217 (424)
Q Consensus 207 d~~~~~~~~~~--------------------------------------------------------------------- 217 (424)
|-..+...+.+
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 97764221100
Q ss_pred --------------------cce--ee------eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC-CCCCCCeee
Q 014433 218 --------------------EAM--QI------FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQS 268 (424)
Q Consensus 218 --------------------~~~--~~------~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~ 268 (424)
... +. -..|.-.+++.+++|.++ .+|++..||.|.+|.--. .........
T Consensus 168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTL 246 (792)
T ss_pred EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceE
Confidence 000 00 012444578899999986 567999999999995433 222334556
Q ss_pred eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
+.-|...|++++|+++|.+ |.+|+..|.+.+|.+.+.+ .+-+.--.++|..+.++|++. +.+....|+.|.+-...
T Consensus 247 lHWH~~~V~~L~fS~~G~~-LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDGAY-LLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEecccccceeEEecCCce-EeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEecc
Confidence 6778999999999999995 8899999999999999844 334444578999999999996 67788889999999887
Q ss_pred CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
+..............+.. ..+..+-.+.++++|.-+ .++-.+..|.|++||+-+..
T Consensus 323 dl~~k~tIsgi~~~~~~~---k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPST---KTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred chhhhhhccCccCCCccc---cccccccceeEEEcCCCC-ceeecCCCceEEEEeccccc
Confidence 765444433222111111 122344567889999555 56677889999999997763
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1e-13 Score=119.77 Aligned_cols=212 Identities=16% Similarity=0.218 Sum_probs=158.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC--Cc
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD--AQ 202 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~ 202 (424)
.+.|..++... + .|++|-.+|.+.+|........ ..+...+..+ ..+..+.-++..++++++|+.. ..
T Consensus 105 ~~~I~gl~~~d-g--~Litc~~sG~l~~~~~k~~d~h------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 105 TKSIKGLKLAD-G--TLITCVSSGNLQVRHDKSGDLH------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred cccccchhhcC-C--EEEEEecCCcEEEEeccCCccc------cccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 34555555442 3 5777889999999998852211 2334444434 4567788888888778889998 88
Q ss_pred EEEEeCCCCCCCCcccceee-eec--CCccEeeEEEecC-CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 203 ICLWDINAAPKNKSLEAMQI-FKV--HEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
+.+||+++.......+.+.. .-+ -.-.++++.|.+. -.+.||+++.-+.+++||.+.+. +|+..+.-...++++
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISS 252 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCccee
Confidence 99999987643222111110 001 1234677888775 13567899999999999999665 578888778899999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+...|.+. ++++|..-|.+..||+|........+.+-.+.|+++..+|.++ ++|+|+-|..++|+|+.+.
T Consensus 253 ~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 253 TGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eeecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 99999887 6999999999999999985555556888899999999999986 8999999999999999874
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=4.8e-12 Score=106.77 Aligned_cols=179 Identities=18% Similarity=0.290 Sum_probs=127.8
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec--
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-- 225 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 225 (424)
..|.|||-.. ..++..+. ...+|.++.+.++ .|++.- .+.|.||......+ .+..+..
T Consensus 75 NkviIWDD~k----------~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k-----~l~~~et~~ 134 (346)
T KOG2111|consen 75 NKVIIWDDLK----------ERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPK-----LLHVIETRS 134 (346)
T ss_pred ceEEEEeccc----------CcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChh-----heeeeeccc
Confidence 5899999433 34455554 6788999999863 455554 47899999874421 2222221
Q ss_pred CCccEeeEEEecCCCcEEEE-EeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc-EEEEEC
Q 014433 226 HEGVVEDVAWHLRHEYLFGS-VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT-VKLFDL 303 (424)
Q Consensus 226 ~~~~v~~~~~~~~~~~~~~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~-i~iwd~ 303 (424)
....+.+++-+ .+..++|. |-.-|.|+|-|+...... +...+.+|.+.|.|++.+.+|. ++||++..|+ |+|||.
T Consensus 135 NPkGlC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 135 NPKGLCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDT 211 (346)
T ss_pred CCCceEeecCC-CCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEc
Confidence 12223333222 22334433 445799999999876532 3456789999999999999998 7999999996 899999
Q ss_pred CCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 304 RKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 304 ~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.+ +.++..+.- ....|.+++|||+.. +||++|..|+++||.++...
T Consensus 212 ~~-g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 212 ED-GTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CC-CcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCC
Confidence 98 677777653 345799999999995 89999999999999998754
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.1e-13 Score=126.58 Aligned_cols=221 Identities=13% Similarity=0.130 Sum_probs=138.5
Q ss_pred ccCCceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
.|...+...+|+|++.. ||..+. ...|++|++.. +. ...+..+.+...+.+|+|++..++++.+.
T Consensus 201 ~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~--------g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 201 RSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLAT--------GQ---RELVASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred cCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCC--------CC---EEEeccCCCCccCceECCCCCEEEEEEeC
Confidence 46678889999999984 554442 34699999876 11 12333344455678999999865566666
Q ss_pred CC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCC
Q 014433 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+| .|.+||+.++.. ..+..+.......+|+|+++.++.+...+|. |+++|+.++. ...+..+...
T Consensus 269 ~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt~~g~~ 337 (433)
T PRK04922 269 DGNPEIYVMDLGSRQL-------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLTFQGNY 337 (433)
T ss_pred CCCceEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 66 589999976532 2233344455678999999877655545555 6666766544 2222223344
Q ss_pred eeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCC
Q 014433 276 VNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRID 351 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~ 351 (424)
...++|+|+|+.++++...++ .|.+||+.+ +... .+. +........|+|+|+.++++....+ .|.++++...
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~- 413 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR- 413 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 557899999996544443333 699999976 3332 333 2334567899999986555554433 4666666432
Q ss_pred cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP 384 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 384 (424)
....+..+.+.+...+|+|
T Consensus 414 --------------~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --------------VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --------------ceEEcccCCCCCCCCccCC
Confidence 2233333445577778876
No 230
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=4.2e-15 Score=139.42 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=177.9
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-+|.+.|+.++.+..+. ++|+++.|..|++|.+.. +.++..+.+|++.|++|+|+|- .+.+.||
T Consensus 229 rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~----------~~pvsvLrghtgavtaiafsP~-----~sss~dg 292 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPD----------GAPVSVLRGHTGAVTAIAFSPR-----ASSSDDG 292 (1113)
T ss_pred CCCccccchhccchhhh-hhhhcccCceEEEEecCC----------CchHHHHhccccceeeeccCcc-----ccCCCCC
Confidence 37999999999998665 899999999999999988 7888889999999999999993 3778999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
++++||.+-......-.+.. +. ....+.++.|...+. -+++++.|+.-..|.+..-.. +...+.-+.+
T Consensus 293 t~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~---------~~~~lif~t~ 360 (1113)
T KOG0644|consen 293 TCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFENNGD-RFLTGSRDGEARNHEFEQLAW---------RSNLLIFVTR 360 (1113)
T ss_pred ceEeccccccccccCCCCCC-cc-cccceeeeecccccc-ccccccCCcccccchhhHhhh---------hccceEEEec
Confidence 99999987221111111111 11 234566677776665 456999999988887654221 1222222222
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+.+-..+.+++-.+-.+.+|++.. +...+.+.+|...+..+.++|..+.+..+++.||...|||+-.+..
T Consensus 361 ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--------- 430 (1113)
T KOG0644|consen 361 SSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--------- 430 (1113)
T ss_pred cccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---------
Confidence 222233566777788899999998 7888899999999999999999988888999999999999987542
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...+. .+|. .+.+-+|+++|. -++....-|.++|.....+
T Consensus 431 ---ik~y~-~gh~-kl~d~kFSqdgt-s~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 431 ---IKHYF-IGHG-KLVDGKFSQDGT-SIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ---ceeee-cccc-eeeccccCCCCc-eEecCCCCCceEEeccCCC
Confidence 22222 4444 577889999999 4666677788888766543
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=9.2e-13 Score=124.31 Aligned_cols=222 Identities=8% Similarity=0.065 Sum_probs=138.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.+.+.+...+|+|+|+.++.+.. .+..|++|++.. +... .+......+..+.|+|+|..++++.+.+
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--------G~~~---~l~~~~~~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--------GAVR---QVASFPRHNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--------CCeE---EccCCCCCcCCeEECCCCCEEEEEEcCC
Confidence 45668899999999985444432 245799999876 2122 2222333345689999998544455555
Q ss_pred C--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccCCCe
Q 014433 201 A--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 201 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v 276 (424)
| .|.+||+.++.. ..+..+...+....|+|+++.++.+...++...|| |+.++. ...+.......
T Consensus 265 g~~~I~~~d~~tg~~-------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~~ 333 (429)
T PRK03629 265 GSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQN 333 (429)
T ss_pred CCcEEEEEECCCCCE-------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCCc
Confidence 5 488899876532 22233445678899999998776555445554555 665543 23333344456
Q ss_pred eEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe---EEEeeCCCCC
Q 014433 277 NCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR---LMVWDLSRID 351 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~---i~iwd~~~~~ 351 (424)
.+..|+|+|+.+++++..++ .|.+||+.+ +. ...+.. ........|+|+|.. |+.++.++. +.++++..
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~-~~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G-- 407 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD-TFLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDG-- 407 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCC-CCCCCCceECCCCCE-EEEEEcCCCceEEEEEECCC--
Confidence 67899999996555554443 588899876 33 233332 223456889999975 555555543 66677643
Q ss_pred cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
.....+.+|.+.+...+|+|-
T Consensus 408 -------------~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 -------------RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -------------CCeEECccCCCCcCCcccCCC
Confidence 223445567778889999873
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=8.2e-14 Score=115.99 Aligned_cols=239 Identities=14% Similarity=0.151 Sum_probs=162.4
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecC---CCCceEEEEeCCCcEEEEeCCCCCCCCcccceee
Q 014433 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI 222 (424)
Q Consensus 147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 222 (424)
.|.+.+|++... ...+...++ .....+..+.|.- ++.-.++-+...|.|.++..........+..+..
T Consensus 45 ~Gkl~Lys~~d~--------~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~ 116 (339)
T KOG0280|consen 45 SGKLHLYSLEDM--------KLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS 116 (339)
T ss_pred ccceEEEeeccc--------ccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence 456777777652 122222222 1334456666653 1222466777789999998765433333333222
Q ss_pred eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014433 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd 302 (424)
.........++.|++.+..++ ++-.+|.+.+.+..... .+.++..+.|.-.+....|+...++++.+|+.|+.+..||
T Consensus 117 ~ki~~~~~lslD~~~~~~~i~-vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 117 KKISVVEALSLDISTSGTKIF-VSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred hhhhheeeeEEEeeccCceEE-EEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 222222356788888887655 77788998866665544 3456678899999999999998888999999999999999
Q ss_pred CCCCCCcceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE
Q 014433 303 LRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381 (424)
Q Consensus 303 ~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 381 (424)
+|.++..+.. .+.|...|.+|.-+|..+.++++|+.|..|++||.++..++. +.-. -.+.|+.+.
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-------------~~~~-v~GGVWRi~ 260 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-------------FKAK-VGGGVWRIK 260 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-------------ccCc-cccceEEEE
Confidence 9965655544 567899999999999888899999999999999999875432 2111 126799999
Q ss_pred eCCCCCc-EEEEEeCCCcEEEEecCCccCC
Q 014433 382 WNPCEDW-VISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 382 ~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
++|.... +++++-..| .+|-+++.+..+
T Consensus 261 ~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred ecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence 9996443 344444444 777777776555
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.8e-12 Score=120.14 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=132.8
Q ss_pred eccCCceeEEEecCCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..|.+.+...+|+|+++.++.+.. .+..|++||+.+ + ....+..+.+.+.+.+|+|+|..++++.+.
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~--------g---~~~~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET--------G---QRELVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC--------C---cEEEeecCCCcccCcEECCCCCEEEEEEec
Confidence 367789999999999985444332 246899999976 1 123455566677889999999865567776
Q ss_pred CCc--EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 200 DAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
++. |.+||+.++.. ..+..+........|+|++..++.+...+| .|+++|+..+. ...+..+...
T Consensus 267 ~g~~~Iy~~d~~~~~~-------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~ 335 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR 335 (435)
T ss_pred CCCceEEEEECCCCce-------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence 665 66778766522 223345556678999999987765544444 57888876644 2333334556
Q ss_pred eeEEEecCCCCeEEEEEeCC--CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCC
Q 014433 276 VNCLAFNPFNEWILATGSTD--KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLS 348 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~ 348 (424)
+....|+|+|+.++++.... ..|.+||+.. + ....+. ....+....|+|+|+.+++++... ..+.++|+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 67789999999654444333 3688888754 2 223332 233577899999998655555433 257777775
Q ss_pred C
Q 014433 349 R 349 (424)
Q Consensus 349 ~ 349 (424)
.
T Consensus 413 g 413 (435)
T PRK05137 413 G 413 (435)
T ss_pred C
Confidence 4
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.1e-13 Score=125.66 Aligned_cols=227 Identities=14% Similarity=0.166 Sum_probs=137.7
Q ss_pred eccCCceeEEEecCCCCcEEEEEeC-C--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTV-S--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~-d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..+.+.+.+.+|+|+++. ||..+. + ..|++||+.. + . ...+....+.+.+.+|+|++..++++.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~--------g--~-~~~l~~~~g~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLAT--------G--R-RRVVANFKGSNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred ccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCC--------C--C-EEEeecCCCCccceEECCCCCEEEEEEc
Confidence 356788999999999975 544442 2 4699999976 1 1 2233334455678999999986555677
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.+|...||.++.... ....+..+........|+|+++.++.+...+|...||.+..... ....+.........
T Consensus 260 ~~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~lt~~g~~~~~ 332 (427)
T PRK02889 260 RDGNSQIYTVNADGS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRVTFTGSYNTS 332 (427)
T ss_pred cCCCceEEEEECCCC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEEecCCCCcCc
Confidence 888877776543211 12223334455667899999987765555566667776543211 12222222334456
Q ss_pred EEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCCCCCccc
Q 014433 279 LAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRIDEEQ 354 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~~~~ 354 (424)
.+|+|+|+++++++...+ .|.+||+.. +.. ..+.. ........|+|+++.++++....|. +.+.++..
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g----- 404 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG----- 404 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCC-----
Confidence 789999996444433333 699999986 332 23332 2344678999999866666655554 33444422
Q ss_pred CCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
.....+..+.+.+...+|+|-
T Consensus 405 ----------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 ----------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ----------CceEEeecCCCCCCCCccCCC
Confidence 222333345566777888874
No 235
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2.6e-13 Score=132.69 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=156.2
Q ss_pred CCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEE
Q 014433 168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246 (424)
Q Consensus 168 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 246 (424)
+..+..+..|...+..++.++....+|++||.||+|++|+++.-... ...+...++..-...+.++...+.+. -+|.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVS 1116 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEE
Confidence 34455677788899999998877569999999999999999765433 33444444554567888888888776 45788
Q ss_pred eCCCeEEEEEcCCCCCCCCe----eeeecc-CCCeeE-EEecCCCC-eEEEEEeCCCcEEEEECCCCCCcceEe--cCCC
Q 014433 247 GDDQYLLIWDLRTPSVSKPV----QSVVAH-QSEVNC-LAFNPFNE-WILATGSTDKTVKLFDLRKISTALHTF--DSHK 317 (424)
Q Consensus 247 ~~dg~i~i~d~~~~~~~~~~----~~~~~~-~~~v~~-v~~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~ 317 (424)
+.||.|++.++......+.. .....+ .+.+.+ -+|..... ..++.+...+.|..||+|+. ..+.++ ....
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRLKNQLRH 1195 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhhhcCccc
Confidence 99999999999873221111 111111 223333 34443333 37888888999999999983 333333 2345
Q ss_pred CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC---cEEEEEe
Q 014433 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED---WVISSVA 394 (424)
Q Consensus 318 ~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~ 394 (424)
+.|++++.+|.+. .++.|+..|.+.+||++..... .-.. .++..+|..+..+|-.+ +.+++++
T Consensus 1196 G~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i------------~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPI------------LSWE-HPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred cceeEEEecCCce-EEEEecCCceEEEEEeecCcee------------eccc-CcccCCcceEEeeccCCCCceEEEecc
Confidence 7899999999996 7999999999999999975321 1122 23446788888777543 3444444
Q ss_pred -CCCcEEEEecCCccC
Q 014433 395 -EDNILQIWQMAENIY 409 (424)
Q Consensus 395 -~dg~i~vw~~~~~~~ 409 (424)
..+.|.+|++.++..
T Consensus 1262 ~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLR 1277 (1431)
T ss_pred cCCCceeeeecccCcc
Confidence 678899999999843
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.2e-13 Score=112.50 Aligned_cols=153 Identities=17% Similarity=0.344 Sum_probs=103.8
Q ss_pred eEEEecCCCCceEEEEeC---------CCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEE-EeCCC
Q 014433 182 YGLSWSKFKEGHLLSGSD---------DAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGS-VGDDQ 250 (424)
Q Consensus 182 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s-~~~dg 250 (424)
..+.|+|.|..+++.... -|...+|.++.... +...+. ...++|.+++|+|++..++++ |..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-----ccceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 468899999866555542 23456666644322 112222 134579999999999876433 44678
Q ss_pred eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp 327 (424)
.|.+||++. .++..+ +...++.|.|+|+|++ |++|+. .|.|.+||.++ .+.+..... ..++.++|+|
T Consensus 84 ~v~lyd~~~----~~i~~~--~~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~-~~~i~~~~~--~~~t~~~WsP 153 (194)
T PF08662_consen 84 KVTLYDVKG----KKIFSF--GTQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVRK-KKKISTFEH--SDATDVEWSP 153 (194)
T ss_pred ccEEEcCcc----cEeEee--cCCCceEEEECCCCCE-EEEEEccCCCcEEEEEECCC-CEEeecccc--CcEEEEEEcC
Confidence 999999973 234443 3567899999999995 555543 46799999997 566666543 3578999999
Q ss_pred CCCcEEEEEEC-----CCeEEEeeCCC
Q 014433 328 KNETILASCCL-----GRRLMVWDLSR 349 (424)
Q Consensus 328 ~~~~~l~s~~~-----dg~i~iwd~~~ 349 (424)
+|+.++.+.+. |+.++||++..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecC
Confidence 99854444432 78899999853
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=9.9e-15 Score=128.46 Aligned_cols=242 Identities=17% Similarity=0.281 Sum_probs=175.0
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
.++...+.-...|..++|..+.. ++|++ ....++|||-.. ..+..++.| ..|..|.|.|..- +|+
T Consensus 161 ~~L~~Ei~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~~G-----------tElHClk~~-~~v~rLeFLPyHf-LL~ 225 (545)
T KOG1272|consen 161 KKLHFEINVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDNNG-----------TELHCLKRH-IRVARLEFLPYHF-LLV 225 (545)
T ss_pred ceeeeeeehhhhhhhhhhhcchH-HHHhh-hhceEEEecCCC-----------cEEeehhhc-Cchhhhcccchhh-eee
Confidence 34555666778899999988664 77775 467899999765 344555544 4688999999765 789
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+++..|.++.-|+..++.. ..+....+.+..++-+|-+. ++-+|...|+|.+|...... ++..+..|.++
T Consensus 226 ~~~~~G~L~Y~DVS~GklV------a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ske---PLvKiLcH~g~ 295 (545)
T KOG1272|consen 226 AASEAGFLKYQDVSTGKLV------ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKE---PLVKILCHRGP 295 (545)
T ss_pred ecccCCceEEEeechhhhh------HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcc---hHHHHHhcCCC
Confidence 9999999999999988543 33444567888888889875 77799999999999988755 57777889999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|.+|++++.|. ++||.+.|..++|||+|+.. .+.++.. ..+...+++|..| +| +++....|.||.=......
T Consensus 296 V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~-- 367 (545)
T KOG1272|consen 296 VSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSG-- 367 (545)
T ss_pred cceEEECCCCc-EEeecccccceeEeeecccc-ccceeec-CCCcccccccccc--ce-eeecCCeeeeehhhhcCCC--
Confidence 99999999998 69999999999999999965 4444443 4577889999876 35 4555667999953321100
Q ss_pred CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc
Q 014433 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI 398 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 398 (424)
........+. ..+.|.++.|.|-.. +|..|-..|.
T Consensus 368 ------~~~~pYm~H~-~~~~V~~l~FcP~ED-vLGIGH~~G~ 402 (545)
T KOG1272|consen 368 ------HGETPYMNHR-CGGPVEDLRFCPYED-VLGIGHAGGI 402 (545)
T ss_pred ------CCCcchhhhc-cCcccccceeccHHH-eeeccccCCc
Confidence 0001111111 134799999999766 5555554443
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2.6e-14 Score=120.65 Aligned_cols=220 Identities=16% Similarity=0.252 Sum_probs=151.2
Q ss_pred EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014433 131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA 210 (424)
Q Consensus 131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 210 (424)
.+|+|+|+ ++|+.+.- .+.|-|..+ .+ +..+...-..|.-+.|..+....|.....++.|.+|++..
T Consensus 14 c~fSp~g~-yiAs~~~y-rlviRd~~t----------lq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q 80 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLSRY-RLVIRDSET----------LQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ 80 (447)
T ss_pred eeECCCCC-eeeeeeee-EEEEeccch----------hh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec
Confidence 57999886 89987754 777878766 11 1122223457888999988876677788899999999976
Q ss_pred CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEE
Q 014433 211 APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290 (424)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 290 (424)
..- ...+.....++..++|+|+|++++.+..-+-.|.+|.+.+.+. ..++-.+..+..++|+|+|++ .+
T Consensus 81 pew------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f-~a 149 (447)
T KOG4497|consen 81 PEW------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQF-CA 149 (447)
T ss_pred cee------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCce-ee
Confidence 532 2334556788999999999999999999999999999998653 222333456788999999985 55
Q ss_pred EEeC-CC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433 291 TGST-DK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 291 tg~~-dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
..+. |. .+.|..-.. ...+..+....-..+.+.|+|+|. .| .+||---.- . +
T Consensus 150 i~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg~-~l---------aVwd~~Ley-------------k-v 204 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDGN-WL---------AVWDNVLEY-------------K-V 204 (447)
T ss_pred eeecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCCc-EE---------EEecchhhh-------------e-e
Confidence 5443 22 122221111 234555666666788999999996 34 356542210 1 1
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 401 (424)
..+. -.-.+..++|+|.++ +|+.|+.|+.+||
T Consensus 205 ~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrv 236 (447)
T KOG4497|consen 205 YAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRV 236 (447)
T ss_pred eeee-eccceeEEEeccccc-eEEeeccchhhhh
Confidence 1111 123488899999999 8999999999987
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.3e-12 Score=110.51 Aligned_cols=246 Identities=16% Similarity=0.240 Sum_probs=160.9
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
--..|..|.|..+..++|.....++.|.+|++.. ..-...+......+.+++|+|+|..+|.+...+-.|
T Consensus 47 cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lri 116 (447)
T KOG4497|consen 47 CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRI 116 (447)
T ss_pred HHHHhhheeeeccceeeeeeeeccceEEEEEeec----------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEE
Confidence 3456777889988888888889999999999987 222345666778899999999998888888899999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE-----------------------------------eC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV-----------------------------------GD 248 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------------------------~~ 248 (424)
.+|.+.+.+. ..+.-.+..+..++|+|+++...+.. -+
T Consensus 117 TVWSL~t~~~-------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 117 TVWSLNTQKG-------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred EEEEecccee-------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 9999987532 11222234556777888776432111 11
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---------------------
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--------------------- 307 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--------------------- 307 (424)
+..+.+||---.- .+..+ ...-.+..++|+|.++ +|+.|+.|+.+++.+--+.+
T Consensus 190 g~~laVwd~~Ley---kv~aY-e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 190 GNWLAVWDNVLEY---KVYAY-ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred CcEEEEecchhhh---eeeee-eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 2234445432111 11111 1235788999999888 79999999998885421100
Q ss_pred --------------------------------------------CcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCe
Q 014433 308 --------------------------------------------TALHTFDSHKEEVFQVGWNPKNETILASCCL--GRR 341 (424)
Q Consensus 308 --------------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~ 341 (424)
+|...+......+.-++|+++. ++++|-.. -+.
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~Pna 343 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNA 343 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCce
Confidence 0001111223467889999998 46666543 246
Q ss_pred EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
+-+||++..+. +..--...+|..+.|+|..+.++++.+ ...+++|.++.-.
T Consensus 344 lW~Wdlq~l~l---------------~avLiQk~piraf~WdP~~prL~vctg-~srLY~W~psg~~ 394 (447)
T KOG4497|consen 344 LWLWDLQNLKL---------------HAVLIQKHPIRAFEWDPGRPRLVVCTG-KSRLYFWAPSGPR 394 (447)
T ss_pred EEEEechhhhh---------------hhhhhhccceeEEEeCCCCceEEEEcC-CceEEEEcCCCce
Confidence 89999987432 111223557999999999886555544 5569999987643
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=7.6e-13 Score=112.59 Aligned_cols=267 Identities=16% Similarity=0.282 Sum_probs=180.4
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC------------CceeEEEecCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS------------TEGYGLSWSKF 189 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~ 189 (424)
+.-.+-|.++.|...|. +||||..+|.|.+|.-...... .......++.|. ..|..+.|.++
T Consensus 22 vteadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~-----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKG-----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD 95 (433)
T ss_pred echhcceeeEEeecccc-eEeecCCCCeEEEeeccccccc-----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence 34456788999999887 8999999999999987653220 111223344443 36889999887
Q ss_pred CC-ceEEEEeCCCcEEEEeCCCCCCCC---------------cc--------------cceeee-ecCCccEeeEEEecC
Q 014433 190 KE-GHLLSGSDDAQICLWDINAAPKNK---------------SL--------------EAMQIF-KVHEGVVEDVAWHLR 238 (424)
Q Consensus 190 ~~-~~l~s~~~dg~i~iwd~~~~~~~~---------------~~--------------~~~~~~-~~~~~~v~~~~~~~~ 238 (424)
+. ..++....|.+|++|.+....... .+ .+.+.+ ..|.-.|++|.++.+
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 54 357778899999999987543221 00 111222 357888999999999
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-----CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc---
Q 014433 239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-----QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL--- 310 (424)
Q Consensus 239 ~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--- 310 (424)
...++ + .+|=.|.+|.+.-....-.+.-++.+ ..-|++..|+|..-++|+-.+..|+|++-|+|...-+-
T Consensus 176 ~Et~l-S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 176 KETFL-S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred cceEe-e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 87654 4 47888999998765433233333333 24588999999888889999999999999999522110
Q ss_pred eEe------------cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC----
Q 014433 311 HTF------------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT---- 374 (424)
Q Consensus 311 ~~~------------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---- 374 (424)
..+ ..--..|..+.|++.|+ ++++-.. -+|++||+.... ..+.+.+-|.
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~-------------~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEA-------------KPVETYPVHEYLRS 318 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccC-------------CcceEEeehHhHHH
Confidence 111 11124688999999996 5555433 579999996542 2222222221
Q ss_pred --------CCc---ceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433 375 --------SKI---SDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 375 --------~~v---~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 412 (424)
..| ..++|+-++. .++||+..+.++++++..+..++.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceee
Confidence 123 3578998888 699999999999999888766544
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=8.1e-12 Score=114.53 Aligned_cols=264 Identities=11% Similarity=0.125 Sum_probs=155.5
Q ss_pred EEEEEEeccCCce-eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433 116 VQIIQQINHDGEV-NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 116 ~~~~~~~~h~~~v-~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
.+++.++...+.+ ..+.|+|+++. +.+++.||.|.++|+.+ .+.+.++.. .....+++++++|+.++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~-~yv~~rdg~vsviD~~~----------~~~v~~i~~-G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRY-LYVANRDGTVSVIDLAT----------GKVVATIKV-GGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSE-EEEEETTSEEEEEETTS----------SSEEEEEE--SSEEEEEEE--TTTEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCE-EEEEcCCCeEEEEECCc----------ccEEEEEec-CCCcceEEEcCCCCEEE
Confidence 3445566655554 44779999984 55567899999999988 455566654 44578899999999544
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
++....+.+.++|.++.+....+.. .... .....+..+..+|..+.++++.-..+.|.+.|....+. ........
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~-~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~~i~~ 170 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPT-GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVTTIKV 170 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEEEEE-
T ss_pred EEecCCCceeEeccccccceeeccc-ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--cceeeecc
Confidence 5556799999999977643222211 0011 12356778888888776665666668898889877542 12222334
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--------------------------------------------
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-------------------------------------------- 308 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------------------------------------------- 308 (424)
........|+|++++++++...+..|.++|..+...
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence 566788999999998777766677888888765210
Q ss_pred ----------cceEecCCCCCEEEEEEcCCCCcEEEE---EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-CC
Q 014433 309 ----------ALHTFDSHKEEVFQVGWNPKNETILAS---CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-HT 374 (424)
Q Consensus 309 ----------~~~~~~~h~~~v~~~~~sp~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~ 374 (424)
.++++.....+ .-+.-+|+++++.+. +...+.|.++|.++. +....+.. ..
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------------~~~~~i~~~~~ 315 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------------KVVKTITPGPG 315 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------------EEEE-HHHHHT
T ss_pred cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------------ceeEEEeccCC
Confidence 01122222223 567778998754444 345678999999875 22333221 12
Q ss_pred CCcceEEeCCCCCcEEEEEeCCC-cEEEEecCCccC
Q 014433 375 SKISDFSWNPCEDWVISSVAEDN-ILQIWQMAENIY 409 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~dg-~i~vw~~~~~~~ 409 (424)
..+..+.|+++|+++.+|.-..+ .|.|+|..+..+
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 24889999999998888777666 899999988654
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=1.1e-12 Score=111.62 Aligned_cols=215 Identities=18% Similarity=0.357 Sum_probs=154.0
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+|.+.|+....-|..+ -+.+.+.|.+++||--... ++.-+.. ...-..+++++.+.+... .|+.|-..|
T Consensus 21 eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds-------~q~wpsI-~~~mP~~~~~~~y~~e~~-~L~vg~~ng 90 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDS-------GQYWPSI-YHYMPSPCSAMEYVSESR-RLYVGQDNG 90 (404)
T ss_pred cCchhhhhhheeccCCC-CeEEccccceeeeEEeccc-------cccCchh-hhhCCCCceEeeeeccce-EEEEEEecc
Confidence 36888899888888666 4777899999999976541 1122211 122456788999988665 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE---------------------------
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI--------------------------- 254 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i--------------------------- 254 (424)
++.-+.+...- .....++.+..|...+..+-|+-....++ +.+.|..+.-
T Consensus 91 tvtefs~sedf--nkm~~~r~~~~h~~~v~~~if~~~~e~V~-s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~ 167 (404)
T KOG1409|consen 91 TVTEFALSEDF--NKMTFLKDYLAHQARVSAIVFSLTHEWVL-STGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY 167 (404)
T ss_pred eEEEEEhhhhh--hhcchhhhhhhhhcceeeEEecCCceeEE-EeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence 99988775431 12233455666777777777765554333 4444443322
Q ss_pred ------------EEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEE
Q 014433 255 ------------WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ 322 (424)
Q Consensus 255 ------------~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~ 322 (424)
..+.... ..++..+.+|...+++++|.+... +|.+|..|..+.+||+--.........+|...|..
T Consensus 168 ~fvGd~~gqvt~lr~~~~~-~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNG-CQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA 245 (404)
T ss_pred EEecccccceEEEEEeecC-CceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence 1111111 245677789999999999999766 79999999999999998756677788899999999
Q ss_pred EEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 323 VGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
+...+.-. .|.+++.||.|.+|+++....
T Consensus 246 l~~~~~t~-~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 246 LSYAQHTR-QLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhe-eeeeccCCCeEEEEeccceee
Confidence 98888775 588999999999999986543
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=2.9e-13 Score=115.08 Aligned_cols=289 Identities=19% Similarity=0.316 Sum_probs=184.8
Q ss_pred CCCCCCCCcEEEEEEeccCCceeEEEecCCC-CcEEEEEeCCCeEEEEeCCCCCCCCCC---------------------
Q 014433 107 GGFGCANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPL--------------------- 164 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~latg~~dg~v~iw~~~~~~~~~~~--------------------- 164 (424)
..+.+..+.+..++.+.-...|+.++|.+++ ...+...+.|.+|++|.+.........
T Consensus 66 t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~ 145 (433)
T KOG1354|consen 66 TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEG 145 (433)
T ss_pred eeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeec
Confidence 3444556677777888888999999999864 335566688999999998764332200
Q ss_pred ----CCCCCCcEE-EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee--eeecCCccEeeEEEec
Q 014433 165 ----DGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--IFKVHEGVVEDVAWHL 237 (424)
Q Consensus 165 ----~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~ 237 (424)
.-...+.+. ..+|.--|.+++++.+.. .++++ .|-.|.+|+++-......+.-++ .+..-..-|++..|+|
T Consensus 146 ~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp 223 (433)
T KOG1354|consen 146 RHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP 223 (433)
T ss_pred cccceeeeeeeeeccccceeEeeeeeecCccc-eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH
Confidence 000011111 124777899999999887 45554 57899999997553322221111 0111234688999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCCC---Cee----------eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014433 238 RHEYLFGSVGDDQYLLIWDLRTPSVSK---PVQ----------SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~---~~~----------~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~ 304 (424)
...++|+-.+..|+|++.|+|...... .+. -+..--..|..+.|++.|++ +++-+ --+|++||+.
T Consensus 224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~n 301 (433)
T KOG1354|consen 224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLN 301 (433)
T ss_pred hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEecc
Confidence 999999999999999999999543110 010 01112245788999999985 55543 2589999997
Q ss_pred CCCCcceEecCCCC------------C---EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC-C-CcCCCCC---
Q 014433 305 KISTALHTFDSHKE------------E---VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP-E-DAEDGPP--- 364 (424)
Q Consensus 305 ~~~~~~~~~~~h~~------------~---v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~--- 364 (424)
...+|+.+++.|.. . -..++|+-++. .++||+.....++|++..+...... . .....++
T Consensus 302 me~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~ 380 (433)
T KOG1354|consen 302 MEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV 380 (433)
T ss_pred ccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceeecccccccCCccccc
Confidence 77889888887742 2 25689998885 7899999999999997665432211 0 0001001
Q ss_pred -eeeEEEc-C-------------CCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433 365 -ELLFIHG-G-------------HTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 365 -~~~~~~~-~-------------h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 402 (424)
.+-.+.. | ....+...+|+|... .||.+.. +.+.||
T Consensus 381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en-~ia~aat-nnlyif 431 (433)
T KOG1354|consen 381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN-SIAVAAT-NNLYIF 431 (433)
T ss_pred ccceeeecCCCccccccccchhhhhhHHHhhccCCccc-eeeeeec-CceEEe
Confidence 1111111 1 123467789999988 6777664 446665
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.5e-11 Score=112.46 Aligned_cols=229 Identities=13% Similarity=0.183 Sum_probs=135.8
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce--EEEEeCCC--cEEEEeCCCCCCCCcccceeee
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH--LLSGSDDA--QICLWDINAAPKNKSLEAMQIF 223 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~--l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~ 223 (424)
+.|.+.|.+. .....+........+-.|+|+|..+ +++...+| .|.+.++.++.. ..+.
T Consensus 165 ~~l~~~d~dG-----------~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~----~~lt-- 227 (428)
T PRK01029 165 GELWSVDYDG-----------QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG----KKIL-- 227 (428)
T ss_pred ceEEEEcCCC-----------CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc----eEee--
Confidence 3566666654 1123344455566778999998752 23454444 477778876532 1122
Q ss_pred ecCCccEeeEEEecCCCcEEEEEeCCC----eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~ 299 (424)
...+.....+|+|+|+.++.+...+| .+.+|++..+....+..............+|+|+|+.++.+...+|...
T Consensus 228 -~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ 306 (428)
T PRK01029 228 -ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPR 306 (428)
T ss_pred -cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCce
Confidence 23344556899999988776654433 3444677653211122222222234567899999997665555667555
Q ss_pred EE--ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC
Q 014433 300 LF--DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375 (424)
Q Consensus 300 iw--d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 375 (424)
+| ++...+.....+..+...+....|+|+|+.+++++..+ ..|.+||+..+.. . .+.....
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------~---~Lt~~~~ 371 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------Y---QLTTSPE 371 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------E---EccCCCC
Confidence 55 44322233444544556778899999998655454443 3688999876532 1 1122223
Q ss_pred CcceEEeCCCCCcEEEEEeC--CCcEEEEecCCccC
Q 014433 376 KISDFSWNPCEDWVISSVAE--DNILQIWQMAENIY 409 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~ 409 (424)
.+....|+|+|+++++++.. ...|.+|++..+..
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 46778999999976666543 34688888877644
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.6e-11 Score=116.43 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=133.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.+...+...+|+|+|+.++.+...++ .|++||+.+ +.. ..+....+.....+|+|++..++++.+.+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t--------g~~---~~lt~~~g~~~~~~wSPDG~~La~~~~~~ 283 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT--------QVR---EKVTSFPGINGAPRFSPDGKKLALVLSKD 283 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC--------CCe---EEecCCCCCcCCeeECCCCCEEEEEEeCC
Confidence 34567788999999986555544443 588888865 111 12222233345789999999655566777
Q ss_pred Cc--EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 201 AQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 201 g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
|. |.++|+.++.. ..+..+.......+|+|+++.++.+...++. |.++|+.+++. ..+.......
T Consensus 284 g~~~Iy~~dl~tg~~-------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~Lt~~g~~~ 352 (448)
T PRK04792 284 GQPEIYVVDIATKAL-------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRLTFEGEQN 352 (448)
T ss_pred CCeEEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEEecCCCCC
Confidence 75 77778765421 2233344556778999999887766655554 66667766542 2222222334
Q ss_pred eEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCCCCCc
Q 014433 277 NCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRIDE 352 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~~ 352 (424)
...+|+|+|+.+++++..++ .|.++|+.+ +. ...+... .......|+|+++.++++...++. +.+++...
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G--- 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG--- 426 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC---
Confidence 45789999997666655555 455567765 33 2233221 122345899999876666666665 55566532
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
.....+..+.+.+...+|+|-
T Consensus 427 ------------~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 ------------RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ------------CceEECcCCCCCcCCCccCCC
Confidence 222333344455677788873
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=3.7e-11 Score=113.98 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=138.9
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeeee
Q 014433 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|... .....+..+...+...+|+|+++ +|+.++.. ..|++||+.++.. ..+.
T Consensus 170 ~~l~~~d~~g-----------~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~-------~~~~ 230 (417)
T TIGR02800 170 YELQVADYDG-----------ANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQR-------EKVA 230 (417)
T ss_pred ceEEEEcCCC-----------CCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCE-------EEee
Confidence 3677777654 22345566777788999999998 46655433 4799999976532 1223
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEE
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKL 300 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~i 300 (424)
.+...+.+++|+|+++.++++.+.++ .|++||+.++. ...+..+........|+|+++.++++....+ .|++
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEE
Confidence 34556677899999987776666555 58888988754 2333344455567899999987555554444 5777
Q ss_pred EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC---eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCc
Q 014433 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR---RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377 (424)
Q Consensus 301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 377 (424)
+|+.. +. ...+..+...+....|+|++.. ++.++.++ .|.+||+..... ..+ ... ...
T Consensus 307 ~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~------------~~l---~~~-~~~ 367 (417)
T TIGR02800 307 MDADG-GE-VRRLTFRGGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGE------------RVL---TDT-GLD 367 (417)
T ss_pred EECCC-CC-EEEeecCCCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCe------------EEc---cCC-CCC
Confidence 78775 22 3444445567788999999974 55555554 688888875321 111 111 123
Q ss_pred ceEEeCCCCCcEEEEEeCCC--cEEEEecCC
Q 014433 378 SDFSWNPCEDWVISSVAEDN--ILQIWQMAE 406 (424)
Q Consensus 378 ~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~ 406 (424)
....|+|++++++++...++ .+.+.+...
T Consensus 368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 45689999996666555444 355555444
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.7e-11 Score=112.22 Aligned_cols=219 Identities=13% Similarity=0.129 Sum_probs=133.7
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC--cEEEEeCCCCCCCCcccceeeeecC
Q 014433 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QICLWDINAAPKNKSLEAMQIFKVH 226 (424)
Q Consensus 149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 226 (424)
.|.++|... .....+..+...+.+..|+|+|..++++...++ .|.+||+.++.. ..+.. .
T Consensus 199 ~l~i~d~dG-----------~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~----~~lt~---~ 260 (448)
T PRK04792 199 QLMIADYDG-----------YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR----EKVTS---F 260 (448)
T ss_pred EEEEEeCCC-----------CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe----EEecC---C
Confidence 566677654 112345566778889999999985334433343 588889876532 11111 2
Q ss_pred CccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc--EEEEE
Q 014433 227 EGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT--VKLFD 302 (424)
Q Consensus 227 ~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~--i~iwd 302 (424)
.+.....+|+|+++.++++.+.+|. |+++|+.++. ...+..+.......+|+|+++.++++...++. |.++|
T Consensus 261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 2334578999999988777777775 7777887654 33444455566788999999976666655554 66667
Q ss_pred CCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE--EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceE
Q 014433 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL--MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF 380 (424)
Q Consensus 303 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 380 (424)
+.. ++ ...+..........+|+|+|+.++++...++.. .++|+..+.. ..+ ... ......
T Consensus 337 l~~-g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------~~l---t~~-~~d~~p 398 (448)
T PRK04792 337 LAS-GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------QVL---TST-RLDESP 398 (448)
T ss_pred CCC-CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe------------EEc---cCC-CCCCCc
Confidence 765 33 233322233345679999998665655555544 4456654321 111 111 112345
Q ss_pred EeCCCCCcEEEEEeCCCc--EEEEecCCc
Q 014433 381 SWNPCEDWVISSVAEDNI--LQIWQMAEN 407 (424)
Q Consensus 381 ~~~~~~~~~l~s~~~dg~--i~vw~~~~~ 407 (424)
.|+|+|+.++++...++. +.+++....
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 899999977776666664 666676543
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=5.3e-13 Score=134.82 Aligned_cols=193 Identities=19% Similarity=0.386 Sum_probs=152.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+-..|.++.-+|..+ +.+||+.||.|++|.... ...+..++ .....|+.+.|+.+|. .+..+..||
T Consensus 2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~----------~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg 2273 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGH----------GQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDG 2273 (2439)
T ss_pred cccCceeeecCCCCCc-eEEecCCCceEEEEeccC----------CCeEEEeeccCcchhhhhhhcccCC-ceeeeccCC
Confidence 3457788888899887 788999999999999876 23333332 2337899999999988 589999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe---CCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.+.+|.+.. ++....+.|.....++.|-. .++++++ .++.+.+||..-+.....+. .+|.+.+++
T Consensus 2274 ~l~l~q~~p-------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2274 DLSLWQASP-------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATV 2341 (2439)
T ss_pred ceeecccCC-------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceE
Confidence 999999862 34566778999999999876 3555654 57889999987655433444 689999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
+++-|..+ +|++|+.+|.|++||+|. .+.+++++. +. .+.++++|+..|.++||++.....
T Consensus 2342 l~~~P~~q-llisggr~G~v~l~D~rq-rql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2342 LAYAPKHQ-LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred EEEcCcce-EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh--hhheeeccCcccceEEEEccccch
Confidence 99999887 899999999999999998 677777665 44 234799999999999999987543
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=3.5e-11 Score=110.39 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=153.2
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 219 (424)
++++-..+|.|.|.|..+ .+.+..+......-..+.++|++. ++++++.||.|.++|+.+.+ .
T Consensus 8 ~~V~~~~~~~v~viD~~t----------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~------~ 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT----------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK------V 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-----------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS------E
T ss_pred EEEEecCCCEEEEEECCC----------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCccc------E
Confidence 335556789999999887 455666765544445678999988 68888899999999998774 3
Q ss_pred eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-------cCCCeeEEEecCCCCeEEEEE
Q 014433 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-------HQSEVNCLAFNPFNEWILATG 292 (424)
Q Consensus 220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~tg 292 (424)
+..+.. ......++++++|++++++....+.+.++|.++.+. +..+.. ....+..|..+|....++++-
T Consensus 71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~---v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP---VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E---EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc---eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 333432 445788999999999988888999999999998654 444432 234677888888777545454
Q ss_pred eCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc-------------
Q 014433 293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA------------- 359 (424)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------- 359 (424)
-..+.|-+.|......+...............|+|++++++++...++.|.++|.............
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence 4558898999887544433333345678889999999877777777788989988765432110000
Q ss_pred ----------------------------CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEE---EeCCCcEEEEecCCc
Q 014433 360 ----------------------------EDGPPELLFIHGGHTSKISDFSWNPCEDWVISS---VAEDNILQIWQMAEN 407 (424)
Q Consensus 360 ----------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s---~~~dg~i~vw~~~~~ 407 (424)
.....+.+......... ..+..+|+++++.+. +...+.|.|+|..+.
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 00111233333333333 567789999976665 466789999999876
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.7e-11 Score=112.94 Aligned_cols=218 Identities=13% Similarity=0.104 Sum_probs=135.3
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe-CC--CcEEEEeCCCCCCCCcccceeeeec
Q 014433 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DD--AQICLWDINAAPKNKSLEAMQIFKV 225 (424)
Q Consensus 149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~ 225 (424)
.|.++|.+. .....+..+...+....|+|+++. |+..+ .+ ..|.+|++.++.. ..+..
T Consensus 180 ~l~~~d~~g-----------~~~~~l~~~~~~~~~p~wSpDG~~-la~~s~~~~~~~l~~~~l~~g~~-------~~l~~ 240 (430)
T PRK00178 180 TLQRSDYDG-----------ARAVTLLQSREPILSPRWSPDGKR-IAYVSFEQKRPRIFVQNLDTGRR-------EQITN 240 (430)
T ss_pred EEEEECCCC-----------CCceEEecCCCceeeeeECCCCCE-EEEEEcCCCCCEEEEEECCCCCE-------EEccC
Confidence 477777665 223445567778899999999984 55444 33 3688999976632 11222
Q ss_pred CCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEEE
Q 014433 226 HEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKLF 301 (424)
Q Consensus 226 ~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iw 301 (424)
..+.+...+|+|+++.++.+...+| .|+++|+.++. ...+..+........|+|+++.++++...+| .|+++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 2344557899999987776666555 58888998765 2334445555677899999997666655454 57777
Q ss_pred ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433 302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD 379 (424)
Q Consensus 302 d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 379 (424)
|+.. ++ ...+...........|+|+++.++++...++ .|.++|+..+.. ..+. . ......
T Consensus 317 d~~~-g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------~~lt--~--~~~~~~ 378 (430)
T PRK00178 317 NVNG-GR-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------RILT--D--TSLDES 378 (430)
T ss_pred ECCC-CC-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------EEcc--C--CCCCCC
Confidence 7765 33 2222222233456789999986555544444 477888876431 1111 1 112235
Q ss_pred EEeCCCCCcEEEEEeCCCc--EEEEecCCc
Q 014433 380 FSWNPCEDWVISSVAEDNI--LQIWQMAEN 407 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~dg~--i~vw~~~~~ 407 (424)
..|+|+|+.++++...++. |.++++..+
T Consensus 379 p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 379 PSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 6899999976666655544 566666543
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.8e-11 Score=113.48 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=134.6
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..+...+...+|+|+++.++.+...+ ..|++|++.+ +.. ..+....+.+....|+|+|..++++.+.
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~--------g~~---~~l~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT--------GRR---EQITNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC--------CCE---EEccCCCCCcCCeEECCCCCEEEEEEcc
Confidence 35667889999999998554444333 3688999876 111 2233333445578999999854456665
Q ss_pred CC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+| .|.+||+.++.. ..+..+........|+|+++.++.+...+| .|+++|+.+++. ..+......
T Consensus 264 ~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~~~~ 332 (430)
T PRK00178 264 DGNPEIYVMDLASRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFVGNY 332 (430)
T ss_pred CCCceEEEEECCCCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCC
Confidence 65 578888876532 222334445667899999987776655444 477777766542 222212223
Q ss_pred eeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCCCCC
Q 014433 276 VNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRID 351 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~ 351 (424)
.....|+|++..++++...++ .|.++|+.+ +.. ..+.. ........|+|+|+.++++...+|. +.++++...
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~- 408 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR- 408 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCC-CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 445789999997555554444 588889886 332 22322 2223356899999876666655554 555555321
Q ss_pred cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
....+..+.+.+...+|+|-
T Consensus 409 --------------~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 --------------VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --------------ceEECcCCCCCcCCCccCCC
Confidence 11222233445677778763
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=8e-12 Score=113.80 Aligned_cols=195 Identities=15% Similarity=0.251 Sum_probs=153.5
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEe-------------------cCCCcEEEEEeCC
Q 014433 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-------------------LRHEYLFGSVGDD 249 (424)
Q Consensus 189 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~~~~~~s~~~d 249 (424)
.+..++|....||.+++|+...++....+.+.... ++..++..|. ..+..+++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 34448999999999999999887655444443322 2344444441 1123466778889
Q ss_pred CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC
Q 014433 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~ 329 (424)
|.|.+|++..++. ........|.+.|+++.++.+-. .|.+++.|+.+..|+... ...++.+...+..+.+++.+|++
T Consensus 80 g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 80 GSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred ccEEEEEecCCeE-EEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCC
Confidence 9999999998874 11222256999999999998776 799999999999999998 78888888888999999999998
Q ss_pred CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC-----CCcEEEEEeCCCcEEEEec
Q 014433 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC-----EDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~dg~i~vw~~ 404 (424)
. +|++++ +.|++||+++. +.+..+.||.++|+.+.|... |.++|.+...+..+.+|-+
T Consensus 157 ~-~l~~as--~~ik~~~~~~k--------------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 157 K-ILLTAS--RQIKVLDIETK--------------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred C-EEEecc--ceEEEEEccCc--------------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 6 677665 56999999985 788999999999999999877 7778888888888999988
Q ss_pred CC
Q 014433 405 AE 406 (424)
Q Consensus 405 ~~ 406 (424)
..
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 66
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=5.7e-11 Score=108.35 Aligned_cols=199 Identities=20% Similarity=0.284 Sum_probs=147.7
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEec------C-------------CCCceEE
Q 014433 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS------K-------------FKEGHLL 195 (424)
Q Consensus 135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~-------------~~~~~l~ 195 (424)
|....++|....||.++||+........ ...|...+ .+..++..|. | .+..+++
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~----e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQ----EFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeee----eeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 3344589999999999999987622111 01122111 2223333331 1 1233688
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
-|...|.|.+|++..++... ...-..|.+.|+++.++.+-. .|.+++.|+.+..|+...... +.........
T Consensus 75 lgt~~g~v~~ys~~~g~it~----~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~---~~~~~~~~~~ 146 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITA----KLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI---IRIWKEQKPL 146 (541)
T ss_pred eecCCccEEEEEecCCeEEE----EEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee---eeeeccCCCc
Confidence 89999999999998774321 222346899999999988765 556999999999999998664 6666777888
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC-----CCcEEEEEECCCeEEEeeCCCC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~-----~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+.+++.+|++. ++++++ +.|++||+.+ ++.+.+|.+|.++|++++|-.. |.++|.+...+.-+.+|-+...
T Consensus 147 ~~sl~is~D~~-~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 147 VSSLCISPDGK-ILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred cceEEEcCCCC-EEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99999999987 687775 7899999998 8999999999999999999877 6677777777778999988764
Q ss_pred Cc
Q 014433 351 DE 352 (424)
Q Consensus 351 ~~ 352 (424)
..
T Consensus 223 ~k 224 (541)
T KOG4547|consen 223 DK 224 (541)
T ss_pred cc
Confidence 43
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=1.1e-10 Score=110.90 Aligned_cols=198 Identities=14% Similarity=0.161 Sum_probs=125.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
.+...+...+|+|+++. ||..... ..|++|++.+ + ....+..+...+.+++|+|++..++++.+.
T Consensus 187 ~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~--------g---~~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 187 RSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLAT--------G---QREKVASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred cCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCC--------C---CEEEeecCCCCccceEECCCCCEEEEEECC
Confidence 45567888999999985 5544432 4799999876 1 122344455667789999999865556655
Q ss_pred CC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
++ .|.+|++.++.. ..+..+........|+|+++.++.+....+ .|+++|+.+++ ...+..+...
T Consensus 255 ~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred CCCccEEEEECCCCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 55 588888876532 222234444557789999987765554444 57777877644 2334445566
Q ss_pred eeEEEecCCCCeEEEEEeCCC---cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeC
Q 014433 276 VNCLAFNPFNEWILATGSTDK---TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDL 347 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~ 347 (424)
+..+.|+|++.. ++.++.++ .|.+||+.+ +. ...+.. ........|+|++..++++...++. +.+.+.
T Consensus 324 ~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 324 NASPSWSPDGDL-IAFVHREGGGFNIAVMDLDG-GG-ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ccCeEECCCCCE-EEEEEccCCceEEEEEeCCC-CC-eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 778899999985 55555554 788899876 32 233332 2234567899999865555554443 444443
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=1e-11 Score=120.03 Aligned_cols=203 Identities=11% Similarity=0.124 Sum_probs=149.1
Q ss_pred EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC
Q 014433 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS 263 (424)
Q Consensus 184 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~ 263 (424)
..+.-... .++.+..+..+.+||.........+..-.... -....-+.+++. ...+++|+.-+.|.+|+.....
T Consensus 93 ~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~--l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn-- 166 (967)
T KOG0974|consen 93 AKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCT--LYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDN-- 166 (967)
T ss_pred cchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEE--EEeEEEEeccCc-EEEEEeccccccEEEEeccccC--
Confidence 33333344 58888888999999997653322221100000 001112223333 3456789999999999998333
Q ss_pred CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM 343 (424)
Q Consensus 264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~ 343 (424)
++. .+.+|.+.|.++.|+-+|. ++++.++|+++++|++.+......+.-+|...|..+.|.|+ .+++++.|.+.+
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence 233 5789999999999999998 69999999999999999855555577789999999999998 599999999999
Q ss_pred EeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433 344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 413 (424)
+|+... ..+..+.+|. ..|..++..+... +++|++.|+.+++|++....++...
T Consensus 242 vW~~~~---------------~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~~e~~~ 296 (967)
T KOG0974|consen 242 VWGVNG---------------TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRGLEGHV 296 (967)
T ss_pred EEeccc---------------ceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccccccce
Confidence 996654 2333566664 4589999998887 7999999999999999887766443
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.4e-10 Score=107.57 Aligned_cols=209 Identities=10% Similarity=0.088 Sum_probs=123.2
Q ss_pred cCCceeEEEecCCCCc--EEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 124 HDGEVNRARYMPQNPF--LIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~--~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
....+..-+|+|+|+. ++.+...+| .|++.++.. +.. ..+....+.....+|+|+|..++++...
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~--------g~~---~~lt~~~g~~~~p~wSPDG~~Laf~s~~ 251 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN--------PAG---KKILALQGNQLMPTFSPRKKLLAFISDR 251 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCC--------CCc---eEeecCCCCccceEECCCCCEEEEEECC
Confidence 3455667799999875 323444444 577777765 222 2333344445678999999854444433
Q ss_pred CC----cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccC
Q 014433 200 DA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 200 dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~ 273 (424)
+| .+.+|++..+.... ...............+|+|+|+.++.+...+|...+| ++.... .....+..+.
T Consensus 252 ~g~~di~~~~~~~~~g~~g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~lt~~~ 326 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIGK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRLLTKKY 326 (428)
T ss_pred CCCcceeEEEeecccCCCCc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEEeccCC
Confidence 33 34446765431111 1111222223446789999998776565566755555 443211 1133333444
Q ss_pred CCeeEEEecCCCCeEEEEEeCC--CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCC
Q 014433 274 SEVNCLAFNPFNEWILATGSTD--KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSR 349 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~ 349 (424)
..+....|+|+|+.+++++..+ ..|.+||+.+ ++. ..+......+....|+|+++.+++++... ..|.++|+..
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 5677899999999755555443 3699999986 333 33333344677899999998665555443 4577788765
Q ss_pred C
Q 014433 350 I 350 (424)
Q Consensus 350 ~ 350 (424)
+
T Consensus 405 g 405 (428)
T PRK01029 405 K 405 (428)
T ss_pred C
Confidence 4
No 257
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=3.9e-11 Score=108.86 Aligned_cols=206 Identities=13% Similarity=0.175 Sum_probs=151.4
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
..-..++++.-...++++|+ ...|+-+++.. ..-+..+....+.++++..++... +|++|+.+|.|..
T Consensus 134 ~~GRDm~y~~~scDly~~gs-g~evYRlNLEq----------GrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEf 201 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQ----------GRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEF 201 (703)
T ss_pred cCCccccccCCCccEEEeec-CcceEEEEccc----------cccccccccccccceeeeecCccc-eEEecccCceEEE
Confidence 34445666665555555544 45677778876 344555666678899999999766 8999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCCcc-----EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee-eeccCCCeeEE
Q 014433 206 WDINAAPKNKSLEAMQIFKVHEGV-----VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS-VVAHQSEVNCL 279 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~v 279 (424)
||.+.......+........|.+. |+++.|+.++- -+++|..+|.+.|||+|+.+. +.. -....-+|..+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKKL 277 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCc---eeecccCCccceeee
Confidence 999988766665554444455544 99999998864 568999999999999999663 332 23345689999
Q ss_pred EecCCCC-eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 280 AFNPFNE-WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 280 ~~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.|.+.+. ..+++ .....++|||-.+ +++...+.. ...++.+++-|++. ++.++-.++.+..|=+....
T Consensus 278 ~~~~~~~q~~v~S-~Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 278 DWQDTDQQNKVVS-MDKRILKIWDECT-GKPMASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cccccCCCceEEe-cchHHhhhccccc-CCceeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence 9977632 23444 3467899999887 777777765 56699999999986 78899988888888776543
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.37 E-value=1.3e-09 Score=112.87 Aligned_cols=261 Identities=10% Similarity=0.111 Sum_probs=161.6
Q ss_pred eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--------------cCCCceeEEEecCCCCceE
Q 014433 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--------------GHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l 194 (424)
..+++.+.+..++++-+.++.|++||..... ...+. ++-....+|++.+++. .|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-----------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-----------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-----------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EE
Confidence 4578887655578887888999999976521 11111 1112357899998776 45
Q ss_pred EEE-eCCCcEEEEeCCCCCCCCcccce----eeeec-------CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433 195 LSG-SDDAQICLWDINAAPKNKSLEAM----QIFKV-------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 195 ~s~-~~dg~i~iwd~~~~~~~~~~~~~----~~~~~-------~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
+++ ...+.|+++|+.++.. ..+... ..+.+ .-....+++++|++..++++.+.++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 554 4467899999865421 000000 00000 0113468999997777888888899999999876542
Q ss_pred CCCeeeeec---------------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce------------EecC
Q 014433 263 SKPVQSVVA---------------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH------------TFDS 315 (424)
Q Consensus 263 ~~~~~~~~~---------------~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~------------~~~~ 315 (424)
..+.+ .-.....|+++|++..++++-+.++.|++||+.+....+. .+..
T Consensus 718 ----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 718 ----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred ----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 11110 1124567999999987777878889999999886321110 0100
Q ss_pred C--------CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433 316 H--------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 316 h--------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
+ -.....++++++|. ++++-..+++|++||...+...........+... -....+.-....+++++++|+
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d-G~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD-GKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC-CcccccccCCceEEEEeCCCC
Confidence 0 11346899999985 7888888999999998764321100000000000 000112223567899999998
Q ss_pred cEEEEEeCCCcEEEEecCCccC
Q 014433 388 WVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 388 ~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
++++-+.+++|++|++.++..
T Consensus 872 -lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 872 -LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -EEEEECCCCEEEEEECCCCcc
Confidence 788888999999999988754
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.4e-10 Score=105.21 Aligned_cols=244 Identities=17% Similarity=0.285 Sum_probs=157.7
Q ss_pred eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce-EEE-----EeCCCc
Q 014433 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH-LLS-----GSDDAQ 202 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-l~s-----~~~dg~ 202 (424)
.++.|+++.. +++=-..+.+++|+.... . ...-.-|...|..+.++|.+... +|+ .+.-+.
T Consensus 129 W~~qfs~dEs--l~arlv~nev~f~~~~~f----------~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 129 WVPQFSIDES--LAARLVSNEVQFYDLGSF----------K-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred cccccccchh--hhhhhhcceEEEEecCCc----------c-ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 5888888764 443345678999998861 1 11223367789999999963433 333 345568
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-----------CCeEEEEEcCCCCCCCCeeeeec
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-----------DQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----------dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
|+||..........+.. +.+ ....-..+.|++-+.-+|+.++. ..+++++++..... ... -.
T Consensus 196 vri~~~~~~~~~~~~a~-ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~---~V~-L~ 268 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQPVAN-KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV---SVP-LL 268 (566)
T ss_pred EEEeccccccccchhhh-ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE---EEe-cC
Confidence 99998863322211111 111 22333467788877666554432 34688888874332 111 22
Q ss_pred cCCCeeEEEecCCCCeEEE-EEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC---CCeEEEeeC
Q 014433 272 HQSEVNCLAFNPFNEWILA-TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL---GRRLMVWDL 347 (424)
Q Consensus 272 ~~~~v~~v~~~~~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~---dg~i~iwd~ 347 (424)
..++|.++.|+|.+.-+.+ -|-.-..+.|||++ +.++..+. .++=+++-|+|.|. +++.++. -|.|-|||+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCC-EEEEeecCCCCCceEEEec
Confidence 4789999999999874333 35556789999999 46666654 67888999999996 5555554 478999999
Q ss_pred CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-----CCCcEEEEecCCccCCCCC
Q 014433 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYHDED 413 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~ 413 (424)
.+.. ++..+..- .-+-+.|+|+|.+++.+.. .|+.++||+.....+...+
T Consensus 344 ~n~K--------------~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~ 398 (566)
T KOG2315|consen 344 PNRK--------------LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM 398 (566)
T ss_pred cchh--------------hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh
Confidence 8743 33333322 2456899999997555444 3888999999888765443
No 260
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=3.2e-10 Score=93.71 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=157.2
Q ss_pred EEEecCC----CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 130 RARYMPQ----NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 130 ~~~~~p~----~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
.+.|-|. ...+||.|+..|...+|...+.. ........|...|+-+.=.-+...-+..++.|.++++
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~---------~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~ 142 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND---------GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKT 142 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcc---------cceeeecccccchhhhhhhcccccceeeccCCcceeE
Confidence 3555551 23479999999999999998621 1112222343333222111112224777889999999
Q ss_pred EeCCCCCCCCcccceeeeecCCc--cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-eeeccCCCeeEEEec
Q 014433 206 WDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFN 282 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~~ 282 (424)
.++..+.... ..|.. .+++++++++++ +.++.++...|..|.+..... ..+. ........-.+..|+
T Consensus 143 ~~~~~~s~~~--------~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~se-y~~~~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 143 MVVSGDSNKF--------AVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESE-YIENIYEAPTSDHGFYNSFS 212 (344)
T ss_pred EEEecCcccc--------eeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccc-eeeeeEecccCCCceeeeec
Confidence 9987653321 12333 388999999987 556888889999999987553 1122 233445667889999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEe----cCCCCCEEEEEEcCCCCc-EEEEEECCCeEEEeeCCCCCcccCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTF----DSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
.... .+|+++.||++.|||+|..+.|.... ..|++++..+.|++.|.. +|...-.-+.+.+-|+++....+...
T Consensus 213 ~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 213 ENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 8777 79999999999999999877665433 468999999999986642 34444445679999999876433221
Q ss_pred CcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 358 DAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
-.+ .. ...|. ..|....|+.++.- +.+.+++ .+.=|++..
T Consensus 292 i~~----d~---~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 292 IPD----DV---ERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS 332 (344)
T ss_pred cCc----cc---cccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence 111 00 12233 33778888877763 4443433 345565544
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=2.1e-09 Score=98.70 Aligned_cols=244 Identities=11% Similarity=0.171 Sum_probs=156.3
Q ss_pred EEEeCC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC----CCcEEEEeCCCCCC
Q 014433 142 ATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD----DAQICLWDINAAPK 213 (424)
Q Consensus 142 atg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~ 213 (424)
.+|+.. +.|++|+++... +........ .-......|+++|++. +|+++.. +|.|..|++....
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~------g~l~~~~~~-~~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~- 73 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEET------GTLTLVQTV-AEGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT- 73 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTT------TEEEEEEEE-EESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT-
T ss_pred EEEcCCCCCCCcEEEEEEcCCC------CCceEeeee-cCCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc-
Confidence 344554 789999995411 112222222 2344567799999887 6777665 5799999987642
Q ss_pred CCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee-----------ccCCCeeEEEec
Q 014433 214 NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-----------AHQSEVNCLAFN 282 (424)
Q Consensus 214 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~v~~v~~~ 282 (424)
..+..+............++++|+++.++++...+|.|.++++............. .......++.++
T Consensus 74 -g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 74 -GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp -TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred -ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 23333444443445667899999999998877789999999998743221111111 123457899999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcc---eEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTAL---HTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
|++++++++.-....|.+|++......+ ..+. ........++|+|+++.++++.-.++.|.++++......
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~----- 227 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS----- 227 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-----
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-----
Confidence 9999776666556789999998643222 1222 345678999999999877777777899999998822110
Q ss_pred cCCCCCeeeEEEc----CC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 359 AEDGPPELLFIHG----GH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 359 ~~~~~~~~~~~~~----~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
...+.... +. ......++++|++++++++....+.|.+|++.
T Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 228 -----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred -----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 01111111 11 12467899999999888888788999999994
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.31 E-value=1.6e-10 Score=95.11 Aligned_cols=261 Identities=14% Similarity=0.168 Sum_probs=147.8
Q ss_pred eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC--CCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP--PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 128 v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
|+.+.+..+ ..|+++..++.+..+......... +......+...+..|..+-.+-+.+-.+. .++++..||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence 444445432 356666666555555443211000 00112233444554554433333333344 4999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE-----eCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV-----GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
++.+..... ..........-.+.+....+. ++.++ ..-+..+.|+++..+. +.........|++++
T Consensus 116 ~s~~~~~~~-----~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~~~~~~~~v~~l~ 186 (319)
T KOG4714|consen 116 FSTDKDLAL-----MSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKT---LIPSKKALDAVTALC 186 (319)
T ss_pred EechHHHhh-----hhhcccccccccccceeeccc-EEecCCcceEeeccceeeeccccccc---ccccccccccchhhh
Confidence 998752111 111111111111222223333 22222 1234456677665432 111112234499999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC-----
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT----- 355 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~----- 355 (424)
-+|..++++++|+.||.+.+||.|+...++..+..|+.+|+.+-|+|..+.-|.+++.||.+.-||....-..-.
T Consensus 187 ~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~ 266 (319)
T KOG4714|consen 187 SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASV 266 (319)
T ss_pred CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccc
Confidence 999999999999999999999999988888899999999999999998877899999999999999874211100
Q ss_pred --CCCcCCCCCeee---EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 356 --PEDAEDGPPELL---FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 356 --~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
.....+.-...+ -.+......|+++.. .|+ .|++|+.-+.|++.+
T Consensus 267 ~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~-~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 267 ISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGP-CLVCGTDAEAIYLTR 316 (319)
T ss_pred ccccccCCcccceEeeeccccccceeeeeeec--cCc-eEEeccccceEEEec
Confidence 000000000101 111111223444444 467 588988888888865
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=3.5e-11 Score=112.21 Aligned_cols=213 Identities=18% Similarity=0.312 Sum_probs=156.0
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
-..+|...|+.+.|+|+.+.++|+++.|..|..||+... ..+......-......+.|+-..++ +++.+.
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp---------~~p~ys~~~w~s~asqVkwnyk~p~-vlassh 178 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP---------HRPFYSTSSWRSAASQVKWNYKDPN-VLASSH 178 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCC---------CcceeeeecccccCceeeecccCcc-hhhhcc
Confidence 356899999999999999999999999999999999872 3445555555556778999988885 556667
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
...|++||++.+.. ++..+++|...|+.+.|+..-...+.+++.||+|+.||...... ..........+|..-
T Consensus 179 g~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~ 251 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRG 251 (1081)
T ss_pred CCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceec
Confidence 78899999987753 56677789999999999876555667999999999999876432 111222335566666
Q ss_pred EecCCCCeEEEEEeC-CCcEEE---------EECCCCCCcceEecCCCCCEEEEEEcCCC---------CcEEEEEECCC
Q 014433 280 AFNPFNEWILATGST-DKTVKL---------FDLRKISTALHTFDSHKEEVFQVGWNPKN---------ETILASCCLGR 340 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~-dg~i~i---------wd~~~~~~~~~~~~~h~~~v~~~~~sp~~---------~~~l~s~~~dg 340 (424)
.+-|.|+-..+--.. +..+.+ |+..+..+++++|.+|...|....|-..+ +.-|+|=+.|.
T Consensus 252 r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~ 331 (1081)
T KOG0309|consen 252 RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ 331 (1081)
T ss_pred cccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC
Confidence 777766532222111 113333 44444567899999999999888776433 24588999999
Q ss_pred eEEEeeCCC
Q 014433 341 RLMVWDLSR 349 (424)
Q Consensus 341 ~i~iwd~~~ 349 (424)
.+++|-+..
T Consensus 332 ~lrlWpI~~ 340 (1081)
T KOG0309|consen 332 TLRLWPIDS 340 (1081)
T ss_pred ceEeeeccH
Confidence 999999865
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=1e-10 Score=98.53 Aligned_cols=262 Identities=17% Similarity=0.268 Sum_probs=169.5
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC------------CceeEEEecCC-C
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS------------TEGYGLSWSKF-K 190 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~-~ 190 (424)
....|+++.|...|. ++|+|...|.|.+|....... -..+-...+++|. ..|..+.|..+ +
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~-----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYG-----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccc-----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 456788999988775 899999999999998765210 0112223345554 35788888754 4
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCC----------------------Ccc--------------cceeee-ecCCccEeeE
Q 014433 191 EGHLLSGSDDAQICLWDINAAPKN----------------------KSL--------------EAMQIF-KVHEGVVEDV 233 (424)
Q Consensus 191 ~~~l~s~~~dg~i~iwd~~~~~~~----------------------~~~--------------~~~~~~-~~~~~~v~~~ 233 (424)
...++..+.|.+|++|.+...... ..+ .+.+.+ ..|.-.|+++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 456888889999999988654110 000 111222 4577789999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-----CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC
Q 014433 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-----SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308 (424)
Q Consensus 234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~ 308 (424)
.++.+...++ + +.|-.|.+|++......-.+.-++.|. .-|++..|+|..-.++.-.+..|.|++-|+|...-
T Consensus 179 S~NsD~et~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 179 SFNSDKETLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eecCchheee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9998877554 3 467889999988655433333344443 35889999998877888888999999999995221
Q ss_pred c-----ce----------EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC
Q 014433 309 A-----LH----------TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373 (424)
Q Consensus 309 ~-----~~----------~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 373 (424)
+ +. -+..-...|..+.|+++|+ ++++-+ =-+|+|||++.... ++++..-|
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~-------------pikTi~~h 321 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNMAKN-------------PIKTIPMH 321 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEecccccC-------------CceeechH
Confidence 1 11 1112235788999999996 555544 34799999987542 23332222
Q ss_pred C------------CCc---ceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 374 T------------SKI---SDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 374 ~------------~~v---~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
. ..| ..+.|+-+.. -+.+|+..+..-++-..+...
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~ssg~ 371 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYPTDSSGF 371 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeeccccCCC
Confidence 1 122 2366777776 467777777777776544433
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=9.5e-10 Score=99.90 Aligned_cols=207 Identities=19% Similarity=0.322 Sum_probs=137.8
Q ss_pred EEEeccCCceeEEEecCC-CCcEEEE-----EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433 119 IQQINHDGEVNRARYMPQ-NPFLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~-~~~~lat-----g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 192 (424)
....-|...|+.+.++|. ....+|+ ++.-+.|+||.+....... .....++ ....=..+.|++-+..
T Consensus 159 ~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-----~~a~ksF--Fkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 159 IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-----PVANKSF--FKADKVQMKWNKLGTA 231 (566)
T ss_pred eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-----hhhhccc--cccceeEEEeccCCce
Confidence 333446788999999996 3445554 4556799999987411111 1111112 2223346889998887
Q ss_pred eEEEEeC--C---------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcE-EEEEeCCCeEEEEEcCCC
Q 014433 193 HLLSGSD--D---------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 193 ~l~s~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~s~~~dg~i~i~d~~~~ 260 (424)
+|+.++. | .++++.+++.... ...+ ...++|.++.|+|++..+ ++.|-.-..+.|||++..
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESV------SVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceE------EEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 7665543 2 3577777763211 1111 247899999999998644 334556788999999863
Q ss_pred CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433 261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
++.. -..++=+++-|+|.|..++++|.. -|.+-|||+.+ .+.+..+.... -+-+.|+|+|++ |+|++.
T Consensus 305 ----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~-flTATT 374 (566)
T KOG2315|consen 305 ----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEY-FLTATT 374 (566)
T ss_pred ----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcE-EEEEec
Confidence 2333 346788999999999865555543 48999999998 77888877644 456899999985 545543
Q ss_pred ------CCeEEEeeCCC
Q 014433 339 ------GRRLMVWDLSR 349 (424)
Q Consensus 339 ------dg~i~iwd~~~ 349 (424)
|+.++||+...
T Consensus 375 aPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccEEecCCeEEEEecC
Confidence 77899999864
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=4.9e-10 Score=95.80 Aligned_cols=226 Identities=19% Similarity=0.309 Sum_probs=161.6
Q ss_pred CcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCC-CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
....+.||.+.+++...-|..++ +++.+.|.+++||--+.. +.-+.+ ......+++++.+.+....| ++|-.
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~g-v~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L-~vg~~ 88 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEG-VISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRL-YVGQD 88 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCC-eEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEE-EEEEe
Confidence 34567899999999998887775 999999999999965433 221111 22346789999999987654 58889
Q ss_pred CCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEE---------------------------
Q 014433 249 DQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL--------------------------- 300 (424)
Q Consensus 249 dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~i--------------------------- 300 (424)
.|++.-+.+...-. ...++....|...+..+-|+-.-+. +++.+.|..+.-
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~ 167 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY 167 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence 99998887653211 2234445567777777777655442 444444432221
Q ss_pred ------------EECC-CCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433 301 ------------FDLR-KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 301 ------------wd~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
-.+. +.-.++.++.+|...+.+++|.|... +|.+|..|..+.+||+-... ...
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~-------------g~~ 233 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRK-------------GTA 233 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCc-------------cee
Confidence 1111 01245778889999999999999874 89999999999999997543 456
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCCCCCC
Q 014433 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGD 418 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 418 (424)
..+.+|...|..+..-+.-+ .+.+++.||.|.+|+++....+..+-++.+
T Consensus 234 ~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~etpewl~s~ 283 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVETPEWLDSD 283 (404)
T ss_pred eeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecCccccccc
Confidence 67789999999988887777 688899999999999998877666554443
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.7e-10 Score=108.77 Aligned_cols=192 Identities=20% Similarity=0.274 Sum_probs=143.0
Q ss_pred EecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-----eeEEEecCCCCceEEEEeCCCcEEEE
Q 014433 132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-----GYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 132 ~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~dg~i~iw 206 (424)
.+.-.+. .++.++.+..+.+||..... ....+. +... ..-+..+++. -++++|+.-+.|.+|
T Consensus 94 ~l~~e~k-~i~l~~~~ns~~i~d~~~~~----------~~~~i~-~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW 160 (967)
T KOG0974|consen 94 KLFEENK-KIALVTSRNSLLIRDSKNSS----------VLSKIQ-SDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVW 160 (967)
T ss_pred chhhhcc-eEEEEEcCceEEEEecccCc----------eehhcC-CCceEEEEeEEEEeccCcE-EEEEeccccccEEEE
Confidence 3333344 67778888999999987621 111111 2211 1122234433 379999999999999
Q ss_pred eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC
Q 014433 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE 286 (424)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 286 (424)
+....+. +. .+.+|.+.|.++.|+.++. .+++.++|.++++|++.+.+... ....+|...|..+.|.|.
T Consensus 161 ~~~~dn~-----p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 161 KPHEDNK-----PI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred eccccCC-----cc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--
Confidence 9973322 11 4678999999999999987 55799999999999999987632 355689999999999996
Q ss_pred eEEEEEeCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 287 WILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 287 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.++|++.|.+.++|+.. ...+..+..|. ..|..++..+... +++|++.|+.+++|++....
T Consensus 230 -~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence 48999999999999766 35556777775 4789999998874 79999999999999987643
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=6.7e-08 Score=83.87 Aligned_cols=244 Identities=14% Similarity=0.173 Sum_probs=155.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeee
Q 014433 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIF 223 (424)
Q Consensus 147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~ 223 (424)
+.-|++|++.+.... .. ...+..+.+.++-|+|+|+.+ +|+++-. +|.|..|.++... ..+..+...
T Consensus 15 s~gI~v~~ld~~~g~------l~-~~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~--G~Lt~ln~~ 84 (346)
T COG2706 15 SQGIYVFNLDTKTGE------LS-LLQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDD--GRLTFLNRQ 84 (346)
T ss_pred CCceEEEEEeCcccc------cc-hhhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCC--CeEEEeecc
Confidence 467999999863222 11 223445677889999999887 5777654 5778888776431 111222222
Q ss_pred ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC----------eeEEEecCCCCeEEEEEe
Q 014433 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE----------VNCLAFNPFNEWILATGS 293 (424)
Q Consensus 224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------v~~v~~~~~~~~~l~tg~ 293 (424)
.....+...++++++++.+|++....|.|.++-++.............|.+. +.+..+.|++++++++--
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 2223444889999999999888888899999999875444444344445555 888999999996555544
Q ss_pred CCCcEEEEECCCCCCcc----eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc-CCCCcCCCCCeeeE
Q 014433 294 TDKTVKLFDLRKISTAL----HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ-TPEDAEDGPPELLF 368 (424)
Q Consensus 294 ~dg~i~iwd~~~~~~~~----~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~ 368 (424)
.--.|.+|++.. +... ..+ .....-..|.|+|+++...+.+=.+++|.+|......... ..... ..+-.
T Consensus 165 G~Dri~~y~~~d-g~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i----~tlP~ 238 (346)
T COG2706 165 GTDRIFLYDLDD-GKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI----DTLPE 238 (346)
T ss_pred CCceEEEEEccc-Ccccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee----ccCcc
Confidence 445799999985 3321 112 3356788999999998545555569999999998742110 00000 00011
Q ss_pred EEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 369 IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 369 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.+.+ .....++..+++|++|.+|--....|.++.+...
T Consensus 239 dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 239 DFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 1122 2346778899999965555444557888877654
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.4e-08 Score=95.03 Aligned_cols=257 Identities=13% Similarity=0.203 Sum_probs=161.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC-----CCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL-----DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+......|+.|+.... +||+|+.||.++|..+.+.....+. ........++.||+..|.-+.|+.+.+ .|-+.
T Consensus 12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence 3455678999998664 9999999999999998874333221 122333457889999999999998777 59999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC--------------
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------- 263 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-------------- 263 (424)
..+|.|.+|-+-.++-...+ .-....+.|.+++|+.+|..+ +....||.|.|=.+......
T Consensus 90 Dt~GlIiVWmlykgsW~EEM----iNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEM----INNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred CCCceEEEEeeecccHHHHH----hhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceee
Confidence 99999999988765321111 112245678899999888644 46666776665444332110
Q ss_pred -------------------------------CCeee----eeccCCCeeEEEec--------CCCCeEEEEEeCCCcEEE
Q 014433 264 -------------------------------KPVQS----VVAHQSEVNCLAFN--------PFNEWILATGSTDKTVKL 300 (424)
Q Consensus 264 -------------------------------~~~~~----~~~~~~~v~~v~~~--------~~~~~~l~tg~~dg~i~i 300 (424)
..... +......|..+.|. |+.+ .||.+-..|.+.|
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQI 243 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehh
Confidence 00000 01111224445553 3455 5888888888887
Q ss_pred EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC---------eEEEeeCCCCCcccCCCCcCCCCCeeeEEEc
Q 014433 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR---------RLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371 (424)
Q Consensus 301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (424)
-.-.+...|+..-. .-.+..+.|+++|. +||.++.+. .|.+|..- ...+.+++
T Consensus 244 MR~eND~~Pvv~dt--gm~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~---------------G~i~gtlk 305 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT--GMKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPY---------------GHIVGTLK 305 (1189)
T ss_pred hhhcCCCCCeEEec--ccEeecceecCCCc-EEEEccCcccccCccccceEEEeccc---------------hhheEEEe
Confidence 65554334433322 36789999999995 888887653 23333221 14455555
Q ss_pred CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.....|++++|-..|- =+.-..|+.|.+=++...
T Consensus 306 vpg~~It~lsWEg~gL--riA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 306 VPGSCITGLSWEGTGL--RIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred cCCceeeeeEEcCCce--EEEEEecceEEEEeeccc
Confidence 5667788899876553 233345677766555543
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.8e-10 Score=117.15 Aligned_cols=192 Identities=17% Similarity=0.264 Sum_probs=144.7
Q ss_pred CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEE
Q 014433 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d 256 (424)
+-..|.++.=+|..+ +.++|+.||.|++|.-..++... +.+. .....|+.+.|+.+|+ -+..+..||.+.+|.
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~---~~rt--~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVV---CFRT--AGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEE---Eeec--cCcchhhhhhhcccCC-ceeeeccCCceeecc
Confidence 345677777788777 68999999999999887664321 1111 2237899999999886 456888999999999
Q ss_pred cCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEE
Q 014433 257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l 333 (424)
+. .++....+.|......+.|-. . ++++++ .++.+.+||.-.+...-..-..|.+.++++++.|..+ +|
T Consensus 2280 ~~----pk~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-ll 2351 (2439)
T KOG1064|consen 2280 AS----PKPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LL 2351 (2439)
T ss_pred cC----CcceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EE
Confidence 87 346777788999888888875 3 577765 3679999997654433333378999999999999984 89
Q ss_pred EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 408 (424)
++|+.+|.|++||++... +...++ . ++ ... .+++++..|.++||+++.-.
T Consensus 2352 isggr~G~v~l~D~rqrq--------------l~h~~~-----~----~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQ--------------LRHTFQ-----A----LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EecCCcCcEEEeehHHHH--------------HHHHhh-----h----hh-hhh-eeeccCcccceEEEEccccc
Confidence 999999999999998742 222221 1 44 333 68999999999999998753
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=4e-10 Score=102.06 Aligned_cols=222 Identities=12% Similarity=0.195 Sum_probs=150.0
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
..+.+....+|+..|.+++-..+. +-+++++.|.+|++|.+....... +......+++.|+.+|.++.|..+.. +
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~---~tsaCQfTY~aHkk~i~~igfL~~lr-~ 798 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI---GTSACQFTYQAHKKPIHDIGFLADLR-S 798 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc---ccceeeeEhhhccCcccceeeeeccc-e
Confidence 456677777899999998876544 468889999999999998633222 23445678889999999999987654 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcE-EEEEeCCCeEEEEEcCCCCCCCCeeee--
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYL-FGSVGDDQYLLIWDLRTPSVSKPVQSV-- 269 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~~s~~~dg~i~i~d~~~~~~~~~~~~~-- 269 (424)
++ +.||-|.+||.--+.....+ .. ....+.+..+..-+. .+.+ ++.++...+|+++|.|.......+...
T Consensus 799 i~--ScD~giHlWDPFigr~Laq~---~d-apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 799 IA--SCDGGIHLWDPFIGRLLAQM---ED-APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred ee--eccCcceeecccccchhHhh---hc-CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 55 45799999998655322111 11 111222333333332 3344 444478899999999987643333322
Q ss_pred eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEE-eeCC
Q 014433 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV-WDLS 348 (424)
Q Consensus 270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i-wd~~ 348 (424)
.+....+.+++..+.|.+ +|+|-.+|.|.+.|.|+ +..+..+..-......++- |.. +.|+....|.++.+ |...
T Consensus 873 ~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~-G~vINswrpmecdllqlaa-psd-q~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNK-LAAALSNGCIAILDARN-GKVINSWRPMECDLLQLAA-PSD-QALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred CCCchheeEEEeccCcch-hhHHhcCCcEEEEecCC-CceeccCCcccchhhhhcC-chh-HHHHhhcccceeEeeehhc
Confidence 334466899999999985 89999999999999998 6777666654444444443 333 36777777888888 7655
Q ss_pred CC
Q 014433 349 RI 350 (424)
Q Consensus 349 ~~ 350 (424)
.+
T Consensus 949 dg 950 (1034)
T KOG4190|consen 949 DG 950 (1034)
T ss_pred CC
Confidence 43
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.5e-08 Score=95.70 Aligned_cols=245 Identities=18% Similarity=0.191 Sum_probs=168.8
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC-----------Cce
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-----------EGH 193 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~ 193 (424)
...-.++.|+|.| +||-|+. ..|.|-|..+ .+.+..+.-|...|+.+.|.|.. .-+
T Consensus 15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s----------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ll 81 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS----------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLL 81 (1062)
T ss_pred cccccccccCccc--eEEEecC-ceEEEEehhh----------hhhhhccccCccceeEEEeccCCCchhccCcccccee
Confidence 3345678999977 7888764 5788888776 56677788899999999998742 115
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec---CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
|+++...|.|.+||...... +..+..|..++.+++|-+ +.+.++++-....++.+|+..++.. +-...
T Consensus 82 iAsaD~~GrIil~d~~~~s~------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ 152 (1062)
T KOG1912|consen 82 IASADISGRIILVDFVLASV------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYD 152 (1062)
T ss_pred EEeccccCcEEEEEehhhhh------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccc
Confidence 78888899999999987643 233455778899999865 3446777888889999999999874 44444
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---CcceEe---cCCCC------------C-------------
Q 014433 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS---TALHTF---DSHKE------------E------------- 319 (424)
Q Consensus 271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~---~~h~~------------~------------- 319 (424)
.......|+.++|.....+..-+..|.+.+-+.-... .+.+.+ ..|.. .
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 4556788899999877667777777877777653212 122222 12211 0
Q ss_pred EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEEeCCCc
Q 014433 320 VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSVAEDNI 398 (424)
Q Consensus 320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~ 398 (424)
...++|+|.-++++... .-..+.|+|+... .++....-..+.+.-+.|-|+.+ ..|.+.-.||.
T Consensus 233 ~a~faf~p~~rn~lfi~-~prellv~dle~~--------------~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFIT-FPRELLVFDLEYE--------------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR 297 (1062)
T ss_pred HHhhhcChhhhceEEEE-eccceEEEcchhh--------------ceeEEEEeccCCcceeEeccCCCcceEEEEecCCe
Confidence 13467788776655443 4556999999864 33444433445566677777653 26888889999
Q ss_pred EEEEecCC
Q 014433 399 LQIWQMAE 406 (424)
Q Consensus 399 i~vw~~~~ 406 (424)
+.+|.-+.
T Consensus 298 ltirvrk~ 305 (1062)
T KOG1912|consen 298 LTIRVRKE 305 (1062)
T ss_pred EEEEEeec
Confidence 99997654
No 273
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.13 E-value=5.2e-11 Score=109.59 Aligned_cols=211 Identities=18% Similarity=0.308 Sum_probs=143.7
Q ss_pred CceeEEEecCCC-CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe----CC
Q 014433 126 GEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----DD 200 (424)
Q Consensus 126 ~~v~~~~~~p~~-~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~d 200 (424)
..+.|+++.-+. +-++++|..+|.|-+-.+.... -.......+|...+++++|++-..+.||+|- .|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--------dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--------DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc--------cccceecccccccccccccccccHHHHHhhhhhhccc
Confidence 355666665533 3589999999999999887621 1123345678889999999998777777774 36
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
..+.|||+.+.-..+.-... ...+......+++|..+.+ ++.+|.....++++|+|..... ... -.+..+..+.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~-fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~--~~s--vnTk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPL-FSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDS--VSS--VNTKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCccccc-cccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhh--hhh--hhhhhcccce
Confidence 78999999876332111111 1112344566899997765 5568888899999999954321 111 1234556677
Q ss_pred ecCCCCeEEEEEeCCCcEEEEE-CCCCCCcceEecCCCC----CEEEEEEcCCCCcEEEEEECC-CeEEEeeCCCCC
Q 014433 281 FNPFNEWILATGSTDKTVKLFD-LRKISTALHTFDSHKE----EVFQVGWNPKNETILASCCLG-RRLMVWDLSRID 351 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd-~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~l~s~~~d-g~i~iwd~~~~~ 351 (424)
.+|....++++- .||.|.+|| .++...++..+...+. .+..++|+|....++++.+.| ++|+++|+....
T Consensus 203 Vdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 203 VDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred ecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 777555556554 599999999 7776666666554333 499999999877778888775 679999987644
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=1.9e-07 Score=87.50 Aligned_cols=197 Identities=10% Similarity=0.018 Sum_probs=119.2
Q ss_pred ceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC--CeEEE
Q 014433 180 EGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLI 254 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~i 254 (424)
....-.|+|++...++..+. +..|.++|+.++.. ..+....+......|+|+++.++++.+.+ ..|.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 67789999999853544333 35688889876632 11222345566778999998887666544 46778
Q ss_pred EEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcE
Q 014433 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 255 ~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 332 (424)
+|+..+. ...+..+........|+|+|+.++++....+ .|.+.|+.. +.. ..+...... ...|+|+|+.+
T Consensus 262 ~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g~~--~~~~SPDG~~I 333 (419)
T PRK04043 262 YDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHGKN--NSSVSTYKNYI 333 (419)
T ss_pred EECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCCCc--CceECCCCCEE
Confidence 8887654 2333333333445689999997766665544 577778775 332 222211111 24899999866
Q ss_pred EEEEECC--------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc--EEEE
Q 014433 333 LASCCLG--------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI--LQIW 402 (424)
Q Consensus 333 l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~--i~vw 402 (424)
+++.... ..|.+.|+..+.. ..+ ... .......|+|+|+.++++....+. +.+.
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~------------~~L---T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYI------------RRL---TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCe------------EEC---CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 6555443 3577777765431 111 111 123358899999966665544444 5566
Q ss_pred ecCCc
Q 014433 403 QMAEN 407 (424)
Q Consensus 403 ~~~~~ 407 (424)
++..+
T Consensus 398 ~l~g~ 402 (419)
T PRK04043 398 RLNYN 402 (419)
T ss_pred ecCCC
Confidence 66554
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1e-07 Score=89.39 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=118.3
Q ss_pred CceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC--
Q 014433 126 GEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-- 200 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 200 (424)
+.+...+|+|+++.+++..+. ...|+++|+.+ + ....+....+......|+|+|..++++.+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t--------g---~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT--------G---KKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC--------C---cEEEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 466789999999754443332 35788888876 1 1223333455566788999998666666555
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
..|.++|+.++.. ..+..+........|+|+++.++.+....+ .|.++|+.++.. ..+..... ..
T Consensus 257 ~~Iy~~dl~~g~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rlt~~g~--~~ 323 (419)
T PRK04043 257 PDIYLYDTNTKTL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQVVFHGK--NN 323 (419)
T ss_pred cEEEEEECCCCcE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeCccCCC--cC
Confidence 4577778765521 122223333345689999988776665444 577778876553 11111111 12
Q ss_pred EEecCCCCeEEEEEeCC--------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCC
Q 014433 279 LAFNPFNEWILATGSTD--------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLS 348 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~ 348 (424)
..|+|+|+.++++.... ..|.+.|+.. +. ...+... .......|+|+|+.++++....+. +.+.++.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 48999999766665543 3688888876 33 3334332 233468999999866666554444 4444553
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=1e-07 Score=85.77 Aligned_cols=254 Identities=14% Similarity=0.057 Sum_probs=140.6
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCc
Q 014433 117 QIIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STE 180 (424)
Q Consensus 117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-------~~~ 180 (424)
+++..+.-......+ ++|+++.+.++.+ .+..|.+||..+ .+....+.-- ...
T Consensus 38 ~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t----------~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 38 RVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT----------HLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred EEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc----------CcEEeEEccCCCchhhccCc
Confidence 334444433333344 9999987777777 789999999988 3444333321 222
Q ss_pred eeEEEecCCCCceEEEEe-C-CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433 181 GYGLSWSKFKEGHLLSGS-D-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
...++++|+|+ +|+... . +..|.+.|+.+++....+ .. .+...-...++. .++ +-+.||......+.
T Consensus 107 ~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei------~v-p~~~~vy~t~e~-~~~--~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 107 PWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMM------DV-PDCYHIFPTAND-TFF--MHCRDGSLAKVGYG 175 (352)
T ss_pred cceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEE------eC-CCCcEEEEecCC-ccE--EEeecCceEEEEec
Confidence 34789999998 455444 4 789999999887543222 11 111111112111 111 22344444443333
Q ss_pred CCCCCC--CeeeeeccCCCeeE-EEecC-CCCeEEEEEeCCCcEEEEECCCC----CCcceEecC-------CCCCEEEE
Q 014433 259 TPSVSK--PVQSVVAHQSEVNC-LAFNP-FNEWILATGSTDKTVKLFDLRKI----STALHTFDS-------HKEEVFQV 323 (424)
Q Consensus 259 ~~~~~~--~~~~~~~~~~~v~~-v~~~~-~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~~-------h~~~v~~~ 323 (424)
...... ....+..-..++.. -.|.+ ++.. +.+... |+|.+.|+... ..++..+.. ..+.+.-+
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CCCceEEeeeeeecCCccccccCCceEcCCCcE-EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 221100 00001010011100 03445 6764 444443 99999997542 122222221 23344559
Q ss_pred EEcCCCCcEEEEEE---------CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEE
Q 014433 324 GWNPKNETILASCC---------LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSV 393 (424)
Q Consensus 324 ~~sp~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~ 393 (424)
+++|+++.+++... ..+.|.++|..+. +.+..+.. ...+..++++|+++ .++++.
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--------------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--------------KRLRKIEL-GHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--------------eEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence 99999986665442 1257999998875 33333332 23689999999999 555565
Q ss_pred eCCCcEEEEecCCccC
Q 014433 394 AEDNILQIWQMAENIY 409 (424)
Q Consensus 394 ~~dg~i~vw~~~~~~~ 409 (424)
..++.|.+.|..++..
T Consensus 319 ~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 319 TGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCCcEEEEECcCCeE
Confidence 5789999999988854
No 277
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.05 E-value=1.2e-09 Score=89.90 Aligned_cols=151 Identities=12% Similarity=0.147 Sum_probs=100.3
Q ss_pred EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-----CCcEEEEECCCCCCcceEecCC
Q 014433 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-----DKTVKLFDLRKISTALHTFDSH 316 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~h 316 (424)
-+++++.||.+.+++.+.-.. .......-...-.+.+....+. ++.++.. -+..+.|+++..+..+.....
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~--~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~- 178 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLA--LMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA- 178 (319)
T ss_pred ceEecCCCceEEEEechHHHh--hhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccc-
Confidence 357999999999999876221 1111111111222233333344 3333321 234566776653333222222
Q ss_pred CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433 317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED 396 (424)
Q Consensus 317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 396 (424)
...|++++-+|..+.++++|+.||.+.+||.++.. .....+..|...|+.+.|+|..+--|.++++|
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEccccc-------------chHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 23499999999998899999999999999999863 22334578999999999999877678899999
Q ss_pred CcEEEEecCCccC
Q 014433 397 NILQIWQMAENIY 409 (424)
Q Consensus 397 g~i~vw~~~~~~~ 409 (424)
|.+-.||-++..+
T Consensus 246 Gslw~wdas~~~l 258 (319)
T KOG4714|consen 246 GSLWHWDASTTFL 258 (319)
T ss_pred CcEEEEcCCCceE
Confidence 9999999986544
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=8.1e-08 Score=87.50 Aligned_cols=122 Identities=19% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCC-CCCc--ceEecCCCCCEEEEEEcCCCCcEEEEE--ECCCeEEEe
Q 014433 273 QSEVNCLAFNPFNEWILATGST--DKTVKLFDLRK-ISTA--LHTFDSHKEEVFQVGWNPKNETILASC--CLGRRLMVW 345 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~-~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s~--~~dg~i~iw 345 (424)
...|...+|.|.|..+.+..+. ..++.+|-+.+ ...+ +..+. ....+.+.|+|.|+.+++++ |..|.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 4567888999999864444333 35789998873 2332 33333 46678899999997544433 347889999
Q ss_pred eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-----CCCcEEEEecCCccCC
Q 014433 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYH 410 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----~dg~i~vw~~~~~~~~ 410 (424)
|+...... ......|. ..+.+.|.|.|+|+..+.+ .|.--++|++....+.
T Consensus 523 D~~~a~~k-------------~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 523 DTDYADLK-------------DTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLK 578 (698)
T ss_pred ecchhhhh-------------hccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHH
Confidence 98752211 11112233 3678999999997444433 3666788998877553
No 279
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=8.1e-09 Score=87.33 Aligned_cols=223 Identities=18% Similarity=0.283 Sum_probs=144.8
Q ss_pred CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC------------ccEeeEEEecC-CCcEE
Q 014433 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE------------GVVEDVAWHLR-HEYLF 243 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~~ 243 (424)
....|+++.|...|. +|++|...|.|.++.-+... ....+....+++|. ..|+.+.|..+ ++.-|
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 345689999988777 89999999999999765432 22222333344443 35778888654 44456
Q ss_pred EEEeCCCeEEEEEcCCCCCC---------------------------------------CCeeee-eccCCCeeEEEecC
Q 014433 244 GSVGDDQYLLIWDLRTPSVS---------------------------------------KPVQSV-VAHQSEVNCLAFNP 283 (424)
Q Consensus 244 ~s~~~dg~i~i~d~~~~~~~---------------------------------------~~~~~~-~~~~~~v~~v~~~~ 283 (424)
...+.|.+|++|.+...... ++.+.. .+|.-.++++.|+.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 67789999999988654100 011111 45677789999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcce--EecCCC-----CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc--
Q 014433 284 FNEWILATGSTDKTVKLFDLRKISTALH--TFDSHK-----EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ-- 354 (424)
Q Consensus 284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~~h~-----~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~-- 354 (424)
+.+. +++ ..|-.|.+|.+........ .++.|+ .-|++..|+|..-.++.-.+..|.|++-|++....-.
T Consensus 183 D~et-~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 DKET-LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred chhe-eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 8874 444 4577899999886544433 233443 3589999999877788888889999999998532110
Q ss_pred --CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 355 --TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
......++ .-.--+.+-.+.|.++.|+++|+| |++-+ =.+|+|||+.-.
T Consensus 261 ~klfe~~~D~--v~~~ff~eivsSISD~kFs~ngry-IlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 261 KKLFELTIDG--VDVDFFEEIVSSISDFKFSDNGRY-ILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred hhhhhhccCc--ccchhHHHHhhhhcceEEcCCCcE-EEEec-cceEEEEecccc
Confidence 00000000 000111222456899999999994 66644 467999998643
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.8e-07 Score=97.29 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=135.0
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----------------CCceeEEEecCC
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----------------STEGYGLSWSKF 189 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~~~ 189 (424)
....|++.+++..++++-..++.|+++|..+. .+.++.+- -....+++++|+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-----------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~ 693 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNE-----------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV 693 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCC-----------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC
Confidence 35778898877645555555678999997651 11111110 113468999996
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcccc---eeeeec------CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEA---MQIFKV------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~------~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~ 260 (424)
+..++++.+.++.|++||..++... .+.. .....+ .-...+.|+++|++..++++-+.++.|++||+.++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 5556777778899999998765210 0000 000000 11345679999999888888888999999999865
Q ss_pred CCCC----------Ceeeeec--------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-------
Q 014433 261 SVSK----------PVQSVVA--------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS------- 315 (424)
Q Consensus 261 ~~~~----------~~~~~~~--------~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~------- 315 (424)
.... ....+.. .-.....++++++|. ++++-..++.|++||..+ +.. .++.+
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t-g~v-~tiaG~G~~G~~ 849 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT-KRV-TTLAGTGKAGFK 849 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC-CeE-EEEeccCCcCCC
Confidence 4200 0000000 011246889999887 788888899999999876 322 22221
Q ss_pred -------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 316 -------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 316 -------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.-.....++++++|. ++++.+.++.|++||+.+..
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence 113567899999995 88888889999999998764
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=2.8e-06 Score=74.32 Aligned_cols=224 Identities=14% Similarity=0.102 Sum_probs=143.0
Q ss_pred EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCC
Q 014433 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209 (424)
Q Consensus 130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 209 (424)
++.|.+....++.+-...+.|+.|+... .....+... . ..++++...+. .|+.+...+ +.++|+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-----------~~~~~~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-----------GEVEVIDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-----------TEEEEEESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-----------CeEEEEecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecC
Confidence 5788885556888877889999999876 112222222 2 67788873333 466666654 4555887
Q ss_pred CCCCCCcccceeeee--c-CCccEeeEEEecCCCcEEEEEeCC--------CeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 210 AAPKNKSLEAMQIFK--V-HEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 210 ~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~s~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
+++. ..+.... . .....+++++.++|. ++++.... |.|..++.. ++ +......-...+.
T Consensus 69 ~g~~----~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pNG 138 (246)
T PF08450_consen 69 TGKV----TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPNG 138 (246)
T ss_dssp TTEE----EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEEE
T ss_pred CCcE----EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce----EEEEecCcccccc
Confidence 6522 2222221 1 346789999999987 55565433 557777766 33 2333333456789
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCC------cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKIST------ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~------~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
|+|+|+++.++++-+..+.|..|++..... .+..+....+..-.+++..+|. +.++....+.|.+++.. +
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G-- 214 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G-- 214 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S--
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c--
Confidence 999999997777888889999999975333 1122222223478899999995 77777788899999987 3
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEe-CCCCCcEEEEEe
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSW-NPCEDWVISSVA 394 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~ 394 (424)
.++....-....+++++| .++...|++|.+
T Consensus 215 ------------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 215 ------------KLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ------------CEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ------------cEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 344444433447899999 466665777754
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=2e-06 Score=72.62 Aligned_cols=240 Identities=10% Similarity=0.075 Sum_probs=133.6
Q ss_pred EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---CceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433 131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---TEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 207 (424)
++.+++|+ +||. -.|..|.|-..... -...+.+..-.+ -.-..++|+|++. +||.+...|+|+++|
T Consensus 3 ~~~~~~Gk-~lAi-~qd~~iEiRsa~Dd--------f~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDGK-LLAI-LQDQCIEIRSAKDD--------FSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFD 71 (282)
T ss_pred eeecCCCc-EEEE-EeccEEEEEeccCC--------chheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEe
Confidence 45667776 5665 45777777665541 112222222222 2457899999888 899999999999999
Q ss_pred CCCCCCCCcccceeeee-cCCccEeeEEEecCC-----CcEEEEEeCCCeEEEEEcCCC--CCCCCeeeee---ccCCCe
Q 014433 208 INAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTP--SVSKPVQSVV---AHQSEV 276 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~i~d~~~~--~~~~~~~~~~---~~~~~v 276 (424)
+.... ...+.+..... .....|..+.|.+.. ...|.+....|.++-|-+..+ +.-+....+. .+...|
T Consensus 72 l~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 72 LMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred cccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 97532 12222211111 123466677675432 224446677888887776432 2112222222 246789
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEE-EEECCCe------EEEeeCCC
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILA-SCCLGRR------LMVWDLSR 349 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~-s~~~dg~------i~iwd~~~ 349 (424)
+++.++|..+ +|++|+.... .. . .-.+....+++-..-.+.+++.. +...|+. -.+|.+-+
T Consensus 151 ~~~vy~p~h~-LLlVgG~~~~------~~--~---~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 151 NSAVYHPKHR-LLLVGGCEQN------QD--G---MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred eEEEEcCCCC-EEEEeccCCC------CC--c---cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 9999999877 5555553221 00 0 01122334444444333333222 2222221 12232221
Q ss_pred CCcccCCCCcCCCCCeeeEEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 350 IDEEQTPEDAEDGPPELLFIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
..++.. ......|..+..+|+|. +||+...+|.|.+|++..-.+.
T Consensus 219 ---------------~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 219 ---------------FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ---------------eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhh
Confidence 111221 22356799999999999 8999999999999999775443
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.01 E-value=1.5e-07 Score=78.24 Aligned_cols=196 Identities=10% Similarity=0.050 Sum_probs=126.2
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
+|+.|+.-|...+|...+... .+.....|...|+-+.=..+...-+..++.|.+++++++..+.....++. .
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~-----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~--~- 157 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDG-----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN--Q- 157 (344)
T ss_pred EEEeccccceeeeecccCccc-----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec--c-
Confidence 699999999999999986532 12222223332222111111122233677888888888876554222221 1
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE--ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.-.+++++++++++ ++++.+....|..|.+...+..+.. .......-.+..|+.... .+|++..||++.|||++..
T Consensus 158 ~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence 12388999999998 5888888889999999875544333 223345567889999885 7999999999999999986
Q ss_pred CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCc-EEEEEeCCCcEEEEecCCc
Q 014433 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-VISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~ 407 (424)
...-.. ....-..|.+.+..+.|++-|.. ||.-.-.=+.+.|-|+.+.
T Consensus 236 ~tpm~~---------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 236 ATPMAE---------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred ccchhh---------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 532211 11122357889999999986642 2333233467888888776
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=2.1e-07 Score=78.42 Aligned_cols=201 Identities=14% Similarity=0.213 Sum_probs=110.8
Q ss_pred eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCC-----CceEEEEeCCCc
Q 014433 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFK-----EGHLLSGSDDAQ 202 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-----~~~l~s~~~dg~ 202 (424)
..++|+||+. +||.+...|+|++||+....... ..+..... .-...|.++.|.+.. ...|++-..+|.
T Consensus 47 Rkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~-----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 47 RKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFV-----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred eEEEECCCCc-EEEEEcCCCeEEEEecccceeEE-----cCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 4689999987 89999999999999997521110 00000011 123456677675533 224677778888
Q ss_pred EEEEeCCCCCCCCcccceeee---ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 203 ICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
++-|-+..+.. ........+ ..+...|+++.++|..+.+++.|+....-... .+....+++-
T Consensus 121 L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s--------------~a~~~GLtaW 185 (282)
T PF15492_consen 121 LRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS--------------KASSCGLTAW 185 (282)
T ss_pred eeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc--------------cccccCceEE
Confidence 88887633211 111112222 23467899999999987666555444310000 0112223332
Q ss_pred EecCCCCeEEE-EEeCCCc------EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 280 AFNPFNEWILA-TGSTDKT------VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 280 ~~~~~~~~~l~-tg~~dg~------i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
..-.+.+++.- +...|+. ..+|.+-+ .............|..+..||+|. +||+...+|.|.+|++.....
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchh
Confidence 22222222221 1111211 12222221 000111122467899999999995 899999999999999987654
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=3.1e-07 Score=93.78 Aligned_cols=278 Identities=17% Similarity=0.224 Sum_probs=162.4
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC-----------CC--C----------C--CC-C
Q 014433 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP-----------SK--P----------P--LD-G 166 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~-----------~~--~----------~--~~-~ 166 (424)
...++++-. -...|.+++||||+. +||..+.++++.+-..+-.. .. . + +. +
T Consensus 110 ~~~~E~VG~--vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~g 186 (928)
T PF04762_consen 110 EDEIEIVGS--VDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAG 186 (928)
T ss_pred CceeEEEEE--EcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchh
Confidence 344454443 367899999999987 77777888888886643100 00 0 0 00 0
Q ss_pred C------CCCc------EEEecCCCceeEEEecCCCCceEEEEeC---C---CcEEEEeCCCCCCCCcccceeeeecCCc
Q 014433 167 A------CSPD------LRLRGHSTEGYGLSWSKFKEGHLLSGSD---D---AQICLWDINAAPKNKSLEAMQIFKVHEG 228 (424)
Q Consensus 167 ~------~~~~------~~~~~h~~~v~~l~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 228 (424)
+ ..+. ..+. +...-..|+|-.+|. +||+.+. . ..++||+-+ +.. ......-.+
T Consensus 187 K~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L------~stSE~v~g 257 (928)
T PF04762_consen 187 KAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GEL------QSTSEPVDG 257 (928)
T ss_pred hhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceE------EeccccCCC
Confidence 0 0000 1122 334556899999998 7877664 2 579999875 211 111112233
Q ss_pred cEeeEEEecCCCcEEEEEeC---CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433 229 VVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~ 305 (424)
--.+++|.|.|. ++|+... ...|.+|.-+.-+.......+......|..++|++++. +||.-..|. |.+|-..+
T Consensus 258 Le~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 258 LEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred ccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeC
Confidence 345789999996 6666543 34466665433221111111123456799999999998 788876554 99998877
Q ss_pred CCC-cceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC----CCccc------------------CCCCcCC
Q 014433 306 IST-ALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR----IDEEQ------------------TPEDAED 361 (424)
Q Consensus 306 ~~~-~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~----~~~~~------------------~~~~~~~ 361 (424)
..= ..+.+.. ....+..+.|+|..+..|...+.+|.+..+++.- ..... .+....-
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V 414 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV 414 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence 321 2222222 2334556999998877788888777776655432 11100 0000111
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.||-..+.+. -...|.+++|++++. .+++-..||.|.+|.....
T Consensus 415 PPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 415 PPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCC
Confidence 2222233332 346799999999987 4777788999999996554
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.7e-09 Score=96.83 Aligned_cols=217 Identities=16% Similarity=0.237 Sum_probs=140.2
Q ss_pred cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d 249 (424)
...+.||...|..++-..+.. -+++++.|.+|++|.++..... .+..+..+++.|+.+|.++-|..+.+.+ ++.|
T Consensus 728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i---~ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI---ASCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee---eecc
Confidence 346778999998887666555 5999999999999999754322 2333566778899999999999876533 4568
Q ss_pred CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC-CCeEEEEE-eCCCcEEEEECCCCCCcceEec-----CCCCCEEE
Q 014433 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATG-STDKTVKLFDLRKISTALHTFD-----SHKEEVFQ 322 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~ 322 (424)
|.|++||.--+.....+.--.. .+.+..+..-++ .+.++.+| +...+|+++|.|. ..-...++ +.+..+.+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk-~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPK-EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred CcceeecccccchhHhhhcCcc-cCCCceeEecccCcchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeE
Confidence 9999999876553211111111 223333333333 33355555 6788999999997 44333332 44567899
Q ss_pred EEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE-
Q 014433 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI- 401 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v- 401 (424)
++..+.|. .++++-..|+|.+.|.+++... ...+.-.-....++ .|..+ .++....|.++.|
T Consensus 882 iaVa~~GN-~lAa~LSnGci~~LDaR~G~vI--------------Nswrpmecdllqla-apsdq-~L~~saldHslaVn 944 (1034)
T KOG4190|consen 882 IAVADKGN-KLAAALSNGCIAILDARNGKVI--------------NSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVN 944 (1034)
T ss_pred EEeccCcc-hhhHHhcCCcEEEEecCCCcee--------------ccCCcccchhhhhc-CchhH-HHHhhcccceeEee
Confidence 99999996 6889999999999999987422 11111111122222 23344 4566666777777
Q ss_pred EecCCccCC
Q 014433 402 WQMAENIYH 410 (424)
Q Consensus 402 w~~~~~~~~ 410 (424)
|.-..++..
T Consensus 945 Whaldgimh 953 (1034)
T KOG4190|consen 945 WHALDGIMH 953 (1034)
T ss_pred ehhcCCeee
Confidence 766666543
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.7e-08 Score=85.63 Aligned_cols=221 Identities=14% Similarity=0.134 Sum_probs=131.3
Q ss_pred CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
++..-+.+|...|.+++|+|...+++..++.+..|.|.|+++... ...+..+ ..+++++|.-+..+.+.+|-.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCCcceeEEecc
Confidence 334456778889999999999888899999999999999987643 3334445 789999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCCeeeeec--cCCCeeEEEec------CCCCeEEEEEeCCCcEEEEECCCCC-C--cceEecCCC
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVA--HQSEVNCLAFN------PFNEWILATGSTDKTVKLFDLRKIS-T--ALHTFDSHK 317 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~v~~~------~~~~~~l~tg~~dg~i~iwd~~~~~-~--~~~~~~~h~ 317 (424)
.|.|.|||+|..+. ++..+.+ ...+|..++.- +.+. +|+....+ +..|.+.... . ++..+. ..
T Consensus 257 nG~VlvyD~R~~~~--~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 257 NGMVLVYDMRQPEG--PLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred CceEEEEEccCCCc--hHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 99999999998764 2222222 23455554432 2343 34443332 4556554311 1 222222 24
Q ss_pred CCEEEEEEcCCCCcEEEEEECCCe---EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC----CCC---cceEEeCCCCC
Q 014433 318 EEVFQVGWNPKNETILASCCLGRR---LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH----TSK---ISDFSWNPCED 387 (424)
Q Consensus 318 ~~v~~~~~sp~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~---v~~~~~~~~~~ 387 (424)
+...+++..+..+.+|++.-.+-+ ++.-=.+. +..++.+.+. .-.++ ... -..+.-.++.+
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~--------d~~dG~pVc~-~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRI--------DFRDGFPVCG-KRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeee--------ccccCceeee-ecccccCCcccccccccceecccccc
Confidence 566777777766667776655311 11000000 0000100100 00111 000 11122234557
Q ss_pred cEEEEEeCCCcEEEEecCCccCCC
Q 014433 388 WVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 388 ~~l~s~~~dg~i~vw~~~~~~~~~ 411 (424)
+++..++..+.+.+||+.+..+..
T Consensus 402 ~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEEecCCcceeEEeccchhheee
Confidence 677777888999999999876543
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=4.6e-09 Score=90.03 Aligned_cols=146 Identities=21% Similarity=0.261 Sum_probs=110.4
Q ss_pred EEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC----CCcceEecCCCCCE
Q 014433 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI----STALHTFDSHKEEV 320 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v 320 (424)
+.+.+..+-+-|+.++-. +.+ ...+.|.++.|...++ ++..|..+|.|..+|+|.. +.+.+.+ .|.+.|
T Consensus 229 s~G~sqqv~L~nvetg~~----qsf-~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv 301 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQ----QSF-QSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSV 301 (425)
T ss_pred cccccceeEEEEeecccc----ccc-ccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence 566778899999988653 222 2578899999998776 8999999999999999974 3344444 478999
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceE--EeCCCCCcEEEEEeCCCc
Q 014433 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF--SWNPCEDWVISSVAEDNI 398 (424)
Q Consensus 321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~~~dg~ 398 (424)
+++..-...+++|++.+.+|+|++||++..++. .-+..+.||.+.-.-+ ..++... +++++|.|..
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-----------~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcy 369 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCK-----------KSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCY 369 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcc-----------cceeeeecccccccccccccccccc-eEEEccCeeE
Confidence 999887744467889999999999999976432 2366778886543333 3345555 7888999999
Q ss_pred EEEEecCCccC
Q 014433 399 LQIWQMAENIY 409 (424)
Q Consensus 399 i~vw~~~~~~~ 409 (424)
.+||.+..+-+
T Consensus 370 tRiWsl~~ghL 380 (425)
T KOG2695|consen 370 TRIWSLDSGHL 380 (425)
T ss_pred EEEEecccCce
Confidence 99999997744
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=2.3e-07 Score=87.88 Aligned_cols=269 Identities=17% Similarity=0.167 Sum_probs=171.7
Q ss_pred ccCCceeEEEecCC-----------CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--
Q 014433 123 NHDGEVNRARYMPQ-----------NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-- 189 (424)
Q Consensus 123 ~h~~~v~~~~~~p~-----------~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-- 189 (424)
.|+..|+.++|.|- ...+||++...|.|.+||... ...+..+..|..++..++|-+.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----------~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----------ASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----------hhhhhhhcCCCcchhheeeeeccC
Confidence 36788999999772 234788899999999999987 4556678889999999999764
Q ss_pred -CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-C---C
Q 014433 190 -KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-S---K 264 (424)
Q Consensus 190 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~---~ 264 (424)
...+|++-....++.+|+..++..... .........|+.+.|.+..-|..-+..|.+.+.+.-..+. . +
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWK------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeec------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 224677777778999999998854322 2223456677999997766666666778777776543211 1 1
Q ss_pred CeeeeeccCC----------------C---------eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC
Q 014433 265 PVQSVVAHQS----------------E---------VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE 319 (424)
Q Consensus 265 ~~~~~~~~~~----------------~---------v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~ 319 (424)
.++....|.. . .-.++|+|.-++++... ....+.++|+.- ..++.......+.
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~-~~~l~vvpier~~ 274 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEY-ECCLAVVPIERGG 274 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchh-hceeEEEEeccCC
Confidence 1111111111 0 12346788777655443 567899999987 5777777777777
Q ss_pred EEEEEEcCCCC-cEEEEEECCCeEEEeeCCCCCcccCCCCc-----CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE
Q 014433 320 VFQVGWNPKNE-TILASCCLGRRLMVWDLSRIDEEQTPEDA-----EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393 (424)
Q Consensus 320 v~~~~~sp~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 393 (424)
+.-+.|-|+++ ..|.+...||.+.||-.+....+...... ......++.... .-.+......|..+..++.-
T Consensus 275 akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~sa~avl 352 (1062)
T KOG1912|consen 275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPSALAVL 352 (1062)
T ss_pred cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCChhhhhhh
Confidence 77788887653 36888999999999987664333222110 011112222222 12233444556543344444
Q ss_pred eCCCcEEEEecCCccCCC
Q 014433 394 AEDNILQIWQMAENIYHD 411 (424)
Q Consensus 394 ~~dg~i~vw~~~~~~~~~ 411 (424)
-.+|.+.+|.+..+....
T Consensus 353 ~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 353 YSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred hhcchhHHHhhhcCCcCc
Confidence 457889999999776544
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=3.9e-08 Score=86.17 Aligned_cols=159 Identities=15% Similarity=0.198 Sum_probs=104.6
Q ss_pred EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEE--EeCCCeEEEEEcCCCC
Q 014433 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS--VGDDQYLLIWDLRTPS 261 (424)
Q Consensus 184 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s--~~~dg~i~i~d~~~~~ 261 (424)
+..++.+. +||++..+....++++...... .+...... ....-+++.+..+....+++ .++...+.+|....+.
T Consensus 68 ~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 68 VLTSDSGR-LVAVATSSKQRAVFDYRENPKG--AKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccCCCce-EEEEEeCCCceEEEEEecCCCc--ceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455454 6777777777667776655431 11222111 22233444444444444322 2333444445444322
Q ss_pred CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433 262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 262 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
....-+|-+.++.|+|+|+++ +++++..|..|++-..... ..+..+. +|+.-|..++.-++. .|++++.|+
T Consensus 144 ----~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~ 215 (390)
T KOG3914|consen 144 ----CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDNY--LLLSGSGDK 215 (390)
T ss_pred ----cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccCc--eeeecCCCC
Confidence 334458999999999999998 6889999999999887763 3444444 699999999999875 589999999
Q ss_pred eEEEeeCCCCCccc
Q 014433 341 RLMVWDLSRIDEEQ 354 (424)
Q Consensus 341 ~i~iwd~~~~~~~~ 354 (424)
++++||+.+++...
T Consensus 216 tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 216 TLRLWDITSGKLLD 229 (390)
T ss_pred cEEEEecccCCccc
Confidence 99999999987654
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=1.6e-06 Score=77.81 Aligned_cols=195 Identities=11% Similarity=0.067 Sum_probs=126.9
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE---EEecCCCceeEEE-ecCCCCceEEEEeCCCcEEEEeCCC
Q 014433 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL---RLRGHSTEGYGLS-WSKFKEGHLLSGSDDAQICLWDINA 210 (424)
Q Consensus 135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~-~~~~~~~~l~s~~~dg~i~iwd~~~ 210 (424)
.+|+.++. +..|.|++||..+...+.-.. ..+.. .......+..-+. |++....+++..|. |...+.+...
T Consensus 276 sDGkrIvF--q~~GdIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 276 SDGKRIVF--QNAGDIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCCcEEEE--ecCCcEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 45665444 456889999987632211000 00000 0000111111222 44444447777776 6777777654
Q ss_pred CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC-eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEE
Q 014433 211 APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL 289 (424)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l 289 (424)
+.. .--++.+.|.-..+..+.. -++.|..|| .+-|+|.++++ +..+...-+.|.++..+|+|++ +
T Consensus 351 ~~~--------iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~-~ 416 (668)
T COG4946 351 GYS--------IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKK-V 416 (668)
T ss_pred Cee--------EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCCcE-E
Confidence 411 1224677788888877766 456888888 89999999876 3455566788999999999984 7
Q ss_pred EEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC----eEEEeeCCCC
Q 014433 290 ATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR----RLMVWDLSRI 350 (424)
Q Consensus 290 ~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg----~i~iwd~~~~ 350 (424)
+++.....|-+.|+.+ +.+...-+...+-|+.+.|||+++ ++|-+--+| .|+++|+..+
T Consensus 417 vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 417 VVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCC
Confidence 7777788999999998 554444445567899999999996 677766555 5899999874
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=5e-08 Score=85.51 Aligned_cols=158 Identities=12% Similarity=0.137 Sum_probs=101.5
Q ss_pred eEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCC
Q 014433 232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKIS 307 (424)
Q Consensus 232 ~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~~~ 307 (424)
.+..++.+ .++|++..+....+++.+.... .+.+.. ..-...-+++.|..+....+ .+..-| .+.+|....
T Consensus 67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~~~~sv~-v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIREDTSVL-VADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeeeccceEE-EEeecCCceeeeeecccc--
Confidence 33444544 4667777777766777765442 122222 12233344455544444322 333334 444554443
Q ss_pred CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
.+...+-+|-+-++.++|+||++ +++++..|..|+|-...... ..-.-.-||...|..++.-++.
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-------------~IesfclGH~eFVS~isl~~~~- 206 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-------------VIESFCLGHKEFVSTISLTDNY- 206 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-------------chhhhccccHhheeeeeeccCc-
Confidence 34455668999999999999995 79999999999997765421 1112235899999999998765
Q ss_pred cEEEEEeCCCcEEEEecCCccCC
Q 014433 388 WVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 388 ~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
+|+|+|.|++|++||+.++..-
T Consensus 207 -~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 207 -LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -eeeecCCCCcEEEEecccCCcc
Confidence 5889999999999999998643
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=1.4e-06 Score=78.29 Aligned_cols=261 Identities=13% Similarity=0.155 Sum_probs=158.4
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
-.++|.+.|.-.++.-++. -++.|..|| .+-|+|... .....+...-+.|.++..+++|+ .++.+.
T Consensus 354 iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~-----------~e~kr~e~~lg~I~av~vs~dGK-~~vvaN 420 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG-----------GEVKRIEKDLGNIEAVKVSPDGK-KVVVAN 420 (668)
T ss_pred EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCC-----------ceEEEeeCCccceEEEEEcCCCc-EEEEEc
Confidence 3567888899988888776 688889999 999999987 23455666778899999999998 688888
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC----CeEEEEEcCCCCCCCCeeeeeccCC
Q 014433 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
....+.+.|+.++.. ...-+...+-|+.+.|||+++ .+|-+--+ ..|+++|+..++. .......+
T Consensus 421 dr~el~vididngnv------~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Ki----y~vTT~ta 489 (668)
T COG4946 421 DRFELWVIDIDNGNV------RLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKI----YDVTTPTA 489 (668)
T ss_pred CceEEEEEEecCCCe------eEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeE----EEecCCcc
Confidence 888999999988743 111223457899999999987 45555444 4689999988663 33333344
Q ss_pred CeeEEEecCCCCeEEEEEe------CCCcEEEEECCCCCCcc----------------eEecCCCCC--EEEEE--EcC-
Q 014433 275 EVNCLAFNPFNEWILATGS------TDKTVKLFDLRKISTAL----------------HTFDSHKEE--VFQVG--WNP- 327 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~------~dg~i~iwd~~~~~~~~----------------~~~~~h~~~--v~~~~--~sp- 327 (424)
.=.+-+|.|+++++...+. .|..+.=+......+|. .......+. +..+. ..|
T Consensus 490 ~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~ 569 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPF 569 (668)
T ss_pred cccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhccccccc
Confidence 4566788898886433322 23333222222111110 011100000 00000 001
Q ss_pred ---CCCcEEEEEECCCeEEEeeCCCCCcccCC-CCcCCCCCeeeEEEcC-----CCCCcceEEeCCCCCcEEEEEeCCCc
Q 014433 328 ---KNETILASCCLGRRLMVWDLSRIDEEQTP-EDAEDGPPELLFIHGG-----HTSKISDFSWNPCEDWVISSVAEDNI 398 (424)
Q Consensus 328 ---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~dg~ 398 (424)
.+.+..+++-.+|.|.++...-..+.... ..+........+.+.. -...+.++..|+++..+++ -.||.
T Consensus 570 pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv--k~d~k 647 (668)
T COG4946 570 PVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV--KLDGK 647 (668)
T ss_pred ccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE--EeCCe
Confidence 12344556666777777766543322211 1110000111222221 1346899999999997665 68999
Q ss_pred EEEEecCC
Q 014433 399 LQIWQMAE 406 (424)
Q Consensus 399 i~vw~~~~ 406 (424)
+++++++.
T Consensus 648 l~~f~vek 655 (668)
T COG4946 648 LRLFDVEK 655 (668)
T ss_pred EEEEeccc
Confidence 99999976
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.2e-08 Score=87.54 Aligned_cols=155 Identities=13% Similarity=0.176 Sum_probs=111.7
Q ss_pred eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014433 145 TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 145 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
+.+-.|.+-++.+ .....+. .++.|.++.|...++ ++..|..+|.|..+|++......... ...+
T Consensus 231 G~sqqv~L~nvet-----------g~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~-a~rl- 295 (425)
T KOG2695|consen 231 GLSQQVLLTNVET-----------GHQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWC-AQRL- 295 (425)
T ss_pred cccceeEEEEeec-----------ccccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcc-eEEE-
Confidence 4456677778776 1222333 667899999998776 89999999999999999875543332 2222
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE--ecCCCCeEEEEEeCCCcEEEEE
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA--FNPFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~--~~~~~~~~l~tg~~dg~i~iwd 302 (424)
.|.+.|+++.........+.+.+.+|+|++||+|.-+..+.+..+.+|-..-.-+- .++... .++++++|...+||.
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWS 374 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEe
Confidence 38999999988773334555778999999999998776666888888755433333 344444 677899999999999
Q ss_pred CCCCCCcceEecCC
Q 014433 303 LRKISTALHTFDSH 316 (424)
Q Consensus 303 ~~~~~~~~~~~~~h 316 (424)
++. +..+.++...
T Consensus 375 l~~-ghLl~tipf~ 387 (425)
T KOG2695|consen 375 LDS-GHLLCTIPFP 387 (425)
T ss_pred ccc-CceeeccCCC
Confidence 998 6777666543
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.2e-07 Score=80.56 Aligned_cols=248 Identities=10% Similarity=0.102 Sum_probs=144.0
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...|..++|+|.+..++..++.+..|.|.|+.+ ......+..+ ..+++++|.-+..++|+.|...|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet----------~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET----------SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEeccc----------ceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 46678999999998877899999999999999988 3344455556 789999999999989999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeec--CCccEeeEEE------ecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAW------HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~------~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
|.+||++..... +..+.+ ...+|..++. .+.+. +++.... .+..|.+.......+...-....+
T Consensus 260 VlvyD~R~~~~~-----~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 260 VLVYDMRQPEGP-----LMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred EEEEEccCCCch-----HhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence 999999876432 111111 1223433332 22333 3323222 355666654332222211123356
Q ss_pred CeeEEEecCCCCeEEEEEeCCC------cEEE-EECCCCCCcceE-ecCC-CCC-----EEEEEE-cCCCCcEEEEEECC
Q 014433 275 EVNCLAFNPFNEWILATGSTDK------TVKL-FDLRKISTALHT-FDSH-KEE-----VFQVGW-NPKNETILASCCLG 339 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg------~i~i-wd~~~~~~~~~~-~~~h-~~~-----v~~~~~-sp~~~~~l~s~~~d 339 (424)
...++++++...++|++.-.+. .|-. -|.+. +.++.. ...+ .+. -+...+ .++...++..+...
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 7777888887777777765531 1111 11111 111111 1111 000 011222 34444455566667
Q ss_pred CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC-CCCcEEEEEeCCCcEEEEecCC
Q 014433 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP-CEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
+.+.+||..+....+ .+. -..+|.+++... ++..+|+.- .|..++|++.+.
T Consensus 411 n~lil~D~~s~evvQ--------------~l~-~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQ--------------TLA-LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred ceeEEeccchhheee--------------ecc-cCcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 889999999864333 222 124677666543 333345443 467799987653
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=4.1e-06 Score=85.83 Aligned_cols=251 Identities=15% Similarity=0.264 Sum_probs=151.4
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
..+.|.++.|.++.. -++.+..+|.|.+........ .........-...|.+++|||++. +|+....++++
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~-------~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l 144 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPD-------EDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNL 144 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCC-------CceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEE
Confidence 346788999999776 566678899999993332100 122233334567899999999988 78888888888
Q ss_pred EEEeCCC-----------------------CCCCCcc-----c--------ce------eeeecCCccEeeEEEecCCCc
Q 014433 204 CLWDINA-----------------------APKNKSL-----E--------AM------QIFKVHEGVVEDVAWHLRHEY 241 (424)
Q Consensus 204 ~iwd~~~-----------------------~~~~~~~-----~--------~~------~~~~~~~~~v~~~~~~~~~~~ 241 (424)
.+-.-.- |++..++ + +. ..+. +...-..|+|-.||.+
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 7754211 0000000 0 00 0111 3345667899999975
Q ss_pred EEEEEeC---C---CeEEEEEcCCCCCCCCeeee-eccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCCCcce
Q 014433 242 LFGSVGD---D---QYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKISTALH 311 (424)
Q Consensus 242 ~~~s~~~---d---g~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~ 311 (424)
+ |+.+. . ..++||+-. +. +... ..-.+--.+++|.|.|. +||+.-. ...|.+|.-.....--.
T Consensus 224 F-AVss~~~~~~~~R~iRVy~Re-G~----L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 224 F-AVSSVEPETGSRRVIRVYSRE-GE----LQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred E-EEEEEEcCCCceeEEEEECCC-ce----EEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 4 45442 2 578999875 22 2221 12233345789999997 6777654 34677776443221112
Q ss_pred Ee--cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CCCCCcceEEeCCCCCc
Q 014433 312 TF--DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GHTSKISDFSWNPCEDW 388 (424)
Q Consensus 312 ~~--~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 388 (424)
.+ ......|..++|++++. +||....|. |.+|-..+..- -+...+. .....+..+.|+|..+.
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHW------------YLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHW------------YLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred ecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEE------------EEEEEEEccCCCCCCceEECCCCCC
Confidence 22 23456899999999995 788877665 99999877531 1111111 12233555899998876
Q ss_pred EEEEEeCCCcEEEEecC
Q 014433 389 VISSVAEDNILQIWQMA 405 (424)
Q Consensus 389 ~l~s~~~dg~i~vw~~~ 405 (424)
.|.....+|.+..+++.
T Consensus 363 ~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEEecCCcEEEEEEE
Confidence 67776766777655443
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=1.1e-06 Score=79.61 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=127.8
Q ss_pred CceeEEEecCCCC-cEEEE-----EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe-
Q 014433 126 GEVNRARYMPQNP-FLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS- 198 (424)
Q Consensus 126 ~~v~~~~~~p~~~-~~lat-----g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~- 198 (424)
..|....|+|.+. .-||. .+..+.++||.+.. ...+.+-.-....-..+.|++.|..+|+-.-
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~----------~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK----------NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC----------CCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 5677778888522 23443 34678899999875 1222222212233457889998885443221
Q ss_pred ---------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcE-EEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433 199 ---------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLRTPSVSKPVQS 268 (424)
Q Consensus 199 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~s~~~dg~i~i~d~~~~~~~~~~~~ 268 (424)
....+.|+++..... .......++|.+.+|.|.++.+ +++|..+..+.++|++..- .
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------~ 310 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSI-------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------R 310 (561)
T ss_pred eeecccceeccceEEEEeeccccc-------ceeccccccceeeeecccCCceeEEecccccceeecccccce------E
Confidence 124577888864321 1122457899999999987654 3344688899999998742 2
Q ss_pred eeccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE------CCC
Q 014433 269 VVAHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC------LGR 340 (424)
Q Consensus 269 ~~~~~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~------~dg 340 (424)
+......=+.+.|+|.++++|+.|.. -|.|-+||.......+..+.+. ..+-+.|+|+++. +.+.. .|.
T Consensus 311 ~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF-~~~~~ts~k~~~Dn 387 (561)
T COG5354 311 FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQF-YDTDTTSEKLRVDN 387 (561)
T ss_pred EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceE-EEecCCCcccccCc
Confidence 23445666788999999976655443 3789999988744555566653 3456889999974 44432 277
Q ss_pred eEEEeeCCC
Q 014433 341 RLMVWDLSR 349 (424)
Q Consensus 341 ~i~iwd~~~ 349 (424)
.|+|||+..
T Consensus 388 ~i~l~~v~g 396 (561)
T COG5354 388 SIKLWDVYG 396 (561)
T ss_pred ceEEEEecC
Confidence 899999975
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.6e-07 Score=83.50 Aligned_cols=271 Identities=12% Similarity=0.061 Sum_probs=176.0
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
+...|++.|+.+.... ..++.+++.||.++.|.-... .-..-+..+..|...+.+++.+-++- ++.|.+.
T Consensus 4 ksymhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~i-------sGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d 73 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRI-------SGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVED 73 (558)
T ss_pred hhhcccceeeeEeeeh--hheEEeeecchhhhhcCCCCc-------cceeehhhhHHHHHHHHhhhccccce-eEeeccC
Confidence 3467888888877654 348999999999999986541 11222344567888899999988776 6888777
Q ss_pred -CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC--cEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433 200 -DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 200 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
|..++++|+..-.....++ +..-.+.+..+ .++... .+-++.-.+|.+.++|-+...+ .....-.-|..+|
T Consensus 74 ~Dhs~KvfDvEn~DminmiK----L~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV 147 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIK----LVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPV 147 (558)
T ss_pred cccceeEEEeeccchhhhcc----cccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCce
Confidence 9999999998654322111 11122222222 122211 2333445789999999887664 2334446699999
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCC-CCCc-------------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433 277 NCLAFNPFNEWILATGSTDKTVKLFDLRK-ISTA-------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~-------------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
.++.+++.+. .+++....|.|.-|.... ...| +..+...+....++.|+|++. .+.+-+.|..|
T Consensus 148 ~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkV 225 (558)
T KOG0882|consen 148 KKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKV 225 (558)
T ss_pred EEEEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEE
Confidence 9999999988 588888889999998772 1111 111222346778999999997 58888899999
Q ss_pred EEeeCCCCCcccCCCCcC-------CCCCeeeE-----------EEcCCCC-CcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 343 MVWDLSRIDEEQTPEDAE-------DGPPELLF-----------IHGGHTS-KISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~-------~~~~~~~~-----------~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
+++++.++...+..+... ..+..+.. .+..|.. .-+.+.|...+.++| -++-=| |+|.+
T Consensus 226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fll-y~t~~g-ikvin 303 (558)
T KOG0882|consen 226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLL-YGTILG-IKVIN 303 (558)
T ss_pred EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEE-eeccee-EEEEE
Confidence 999999987655433211 00111110 0111222 345678998999544 444444 89999
Q ss_pred cCCccCC
Q 014433 404 MAENIYH 410 (424)
Q Consensus 404 ~~~~~~~ 410 (424)
+.++.+.
T Consensus 304 ~~tn~v~ 310 (558)
T KOG0882|consen 304 LDTNTVV 310 (558)
T ss_pred eecCeEE
Confidence 9888654
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.7e-06 Score=81.89 Aligned_cols=202 Identities=13% Similarity=0.132 Sum_probs=132.3
Q ss_pred EecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC-----cEEEE
Q 014433 132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-----QICLW 206 (424)
Q Consensus 132 ~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iw 206 (424)
+|++.+. .+|.|+.+|.|.+.+-.- +....++.+...+...-|.-++..+|++.+.|+ .+++|
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 3556554 899999999999888553 334556667666444445555655788877665 48999
Q ss_pred eCCCCCCCCcccce---eeee----cCCccEeeEEEecCCCcEEEEEeCCCeEEEEE--cCCCCCCCCeeeeeccCCCee
Q 014433 207 DINAAPKNKSLEAM---QIFK----VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD--LRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 207 d~~~~~~~~~~~~~---~~~~----~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~v~ 277 (424)
+++......+-.++ +.+. ....++.+++.+.+- ..+|+|-.+|.|..+. +...... ...-......+|+
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pIT 175 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPIT 175 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCce
Confidence 99876433322222 1111 135678889998875 4677999999999884 2222211 1222223467999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.+++..++...+.++. -..|.+|.+.........+..|+.++.|..+++....++ +++ +..+.+|+....
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGR 245 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCc
Confidence 9999988886333333 357999999863323455788889999999998775444 333 345999998753
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=3.4e-07 Score=88.32 Aligned_cols=182 Identities=16% Similarity=0.237 Sum_probs=130.1
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 218 (424)
..++.|+-...+..+|+.+ .+......-....|+-+..+ +. ++.+|...|+|.+-|.++. +
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~----------~~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~------~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNT----------EKETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSF------E 208 (1118)
T ss_pred cceeecchhhheeeeeccc----------ceeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcC------c
Confidence 3456666666777788876 22222222222235555543 44 7999999999999999765 5
Q ss_pred ceeeeecCCccEeeEEEecCCCcEEEEEe---------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEE
Q 014433 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVG---------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL 289 (424)
Q Consensus 219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l 289 (424)
.++.+..|++.|.++..+ |+ +++++| .|..|+|||+|..+...|+... .+ ..-+.|+|.-...+
T Consensus 209 ~iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~-P~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 209 TIHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YG-PQFLRFHPSLTTRL 281 (1118)
T ss_pred eeeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc---cC-chhhhhcccccceE
Confidence 678888999999988765 44 555665 3667899999998776666542 22 25677888777779
Q ss_pred EEEeCCCcEEEEECCCCCCc---ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433 290 ATGSTDKTVKLFDLRKISTA---LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 290 ~tg~~dg~i~iwd~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
++.+..|...+-|......+ +..+......+..+.++++++ .+|.|..+|.|.+|--
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 99999999999994433333 444555566799999999995 8999999999999973
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=5.2e-07 Score=87.06 Aligned_cols=190 Identities=17% Similarity=0.228 Sum_probs=133.4
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~ 269 (424)
++..++.|+....+..+|+++.+.. +......+.|.-++.+ ++ ++.+|...|+|.+-|.++-+ .++++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~------r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~---~iht~ 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET------RTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFE---TIHTF 213 (1118)
T ss_pred CCcceeecchhhheeeeecccceee------eeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcCc---eeeee
Confidence 3345788888888889999876432 1122223345555543 44 45589999999999999855 58999
Q ss_pred eccCCCeeEEEecCCCCeEEEEEeC---------CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433 270 VAHQSEVNCLAFNPFNEWILATGST---------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 270 ~~~~~~v~~v~~~~~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
.+|.+.|..+... |. +|++++. |..|+|||+|+. +.+.-+..+.++ .-+.|+|.-...++.++..|
T Consensus 214 ~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 214 DAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred eccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEeccc
Confidence 9999999877765 55 5777664 557899999984 444444444333 56888998777899999999
Q ss_pred eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...+-|...... |+.-++....-.+.+..+++++++. .++.|..+|.|.+|.-..+
T Consensus 289 q~q~vd~~~lsN----------P~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~~~ 344 (1118)
T KOG1275|consen 289 QFQFVDTATLSN----------PPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADRPQ 344 (1118)
T ss_pred ceeeccccccCC----------CccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCCCC
Confidence 999998544322 1122333333345599999999999 7999999999999985443
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.73 E-value=3e-05 Score=67.66 Aligned_cols=233 Identities=16% Similarity=0.106 Sum_probs=143.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE-----eC
Q 014433 126 GEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-----SD 199 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-----~~ 199 (424)
.....++.+|.....+|.+-.-| ...+||..+...... ....+-..+.+| -.|+++|. +|++. ..
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~--~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g 75 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR--LWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETG 75 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE--EcCCCCCEEecC------EEEcCCCC-EEEEeccccCCC
Confidence 34556888887777888887776 466788876322111 011223345556 57999998 56664 33
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-----------------CCCeEEEEEcCCCCC
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLRTPSV 262 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------------~dg~i~i~d~~~~~~ 262 (424)
.|.|-|||... .+..+..+..|.-.-..+.+.|+++.|+++-+ .+-.+.+.|.+++..
T Consensus 76 ~G~IgVyd~~~-----~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 76 RGVIGVYDAAR-----GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred cEEEEEEECcC-----CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 68899999972 22445666677777788999999977764422 233455566666654
Q ss_pred CCCeeee--eccCCCeeEEEecCCCCeEEEEEeCCC-------cEEEEECCCCCCcceEec-------CCCCCEEEEEEc
Q 014433 263 SKPVQSV--VAHQSEVNCLAFNPFNEWILATGSTDK-------TVKLFDLRKISTALHTFD-------SHKEEVFQVGWN 326 (424)
Q Consensus 263 ~~~~~~~--~~~~~~v~~v~~~~~~~~~l~tg~~dg-------~i~iwd~~~~~~~~~~~~-------~h~~~v~~~~~s 326 (424)
... ..+ .-|...|..++++++|. +++..-..| .|.+++.. ..+..+. .-.+.+-+|+++
T Consensus 151 l~q-~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 151 LEQ-VELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred eee-eecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEe
Confidence 211 123 33677899999999886 333332222 23344332 2222222 234679999999
Q ss_pred CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC
Q 014433 327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395 (424)
Q Consensus 327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 395 (424)
+++..+.+|+=..+.+.+||..++. ++.... -..+..++-.+++ +++|.+.
T Consensus 226 ~~g~~ia~tsPrGg~~~~~d~~tg~--------------~~~~~~--l~D~cGva~~~~~--f~~ssG~ 276 (305)
T PF07433_consen 226 RDGRLIAVTSPRGGRVAVWDAATGR--------------LLGSVP--LPDACGVAPTDDG--FLVSSGQ 276 (305)
T ss_pred CCCCEEEEECCCCCEEEEEECCCCC--------------Eeeccc--cCceeeeeecCCc--eEEeCCC
Confidence 9997666777789999999998863 222221 2235667766665 5666553
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.2e-07 Score=82.63 Aligned_cols=225 Identities=16% Similarity=0.146 Sum_probs=149.5
Q ss_pred CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-CCeEEEE
Q 014433 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIW 255 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~ 255 (424)
|...|+.+.-.. ..++.+++.||.++.|.-..- .-...+..+..|-..|.+++.+-++ .++++++. |..++++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~i---sGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRI---SGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCc---cceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEE
Confidence 777777766443 348999999999999976431 1223345566788899999988877 47778777 9999999
Q ss_pred EcCCCCCCCCeeeeeccCCCeeEEEecCC-CCeEEEEE-eCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcE
Q 014433 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATG-STDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~tg-~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~ 332 (424)
|+.+-....-+ .+.-..+.+.++. ++. -..++|++ ..+|.+.++|-+... +....-..|..+|..+.++|-+. .
T Consensus 82 DvEn~Dminmi-KL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s 158 (558)
T KOG0882|consen 82 DVENFDMINMI-KLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S 158 (558)
T ss_pred Eeeccchhhhc-ccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence 99875431111 1111222222222 221 11234443 457899999988754 44555567999999999999997 5
Q ss_pred EEEEECCCeEEEeeCCCCCcccCCCCcCCCCC---eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP---ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+++....|.|.-|.... ..+.+....+... .-++.+.-......++.|+|++. .+.+-+.|..|+++.+.++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~--~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEG--PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeeccccceeEeecCCC--cccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchh
Confidence 77888889999998873 1111111111110 11222223345678999999999 688889999999999999987
Q ss_pred CCCC
Q 014433 410 HDED 413 (424)
Q Consensus 410 ~~~~ 413 (424)
..+-
T Consensus 236 vqei 239 (558)
T KOG0882|consen 236 VQEI 239 (558)
T ss_pred hhhh
Confidence 6653
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=8e-07 Score=84.76 Aligned_cols=187 Identities=15% Similarity=0.206 Sum_probs=127.3
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
....+.|++++. .++|-|+-+|.|++++... .+ .+...|... .-.|. ++++|+.||.|
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-----------~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv 95 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQG-----------NP-KTNFDHSSS------ILEGE-YVASCSDDGKV 95 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecCC-----------cc-ccccccccc------ccCCc-eEEEecCCCcE
Confidence 456788888864 4899999999999999876 22 233345443 44466 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecC----CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
.|-.+-+.....+ + ....++.+++++|+ ....|++|+.-| +.++.-+=-.....+ .+....++|.++
T Consensus 96 ~I~sl~~~~~~~~------~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i 166 (846)
T KOG2066|consen 96 VIGSLFTDDEITQ------Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSI 166 (846)
T ss_pred EEeeccCCcccee------E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEE
Confidence 9998877643211 1 24578999999998 223466898888 777754432222222 345667899999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC------CEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE------EVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.|. |. ++|=++.+| |++||+.. ++.+..+..... --..+.|.+... |+.|= ..+|+|..++.
T Consensus 167 ~W~--g~-lIAWand~G-v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 167 KWR--GN-LIAWANDDG-VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGW-GDSVKICSIKK 234 (846)
T ss_pred Eec--Cc-EEEEecCCC-cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCe--EEEec-CCeEEEEEEec
Confidence 997 44 788887776 89999987 444444443222 235678887763 55554 44699998883
No 305
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.71 E-value=5.5e-09 Score=96.62 Aligned_cols=212 Identities=14% Similarity=0.204 Sum_probs=136.7
Q ss_pred CceeEEEecCCCC-ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe----CCCeEE
Q 014433 179 TEGYGLSWSKFKE-GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG----DDQYLL 253 (424)
Q Consensus 179 ~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~dg~i~ 253 (424)
.-+.|+++.-+.. .++++|..+|.|.+-.++..-.. ......+|..++++++|++-+...+|+|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 3456676654433 47889999999999988754221 12334567889999999998777776663 467899
Q ss_pred EEEcCCCCC-CCCeeeee-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433 254 IWDLRTPSV-SKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 254 i~d~~~~~~-~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 331 (424)
|||+.+.-. .+.-..+. +......+++|..+.+ ++.+|...+.++++|+|... .......+..+..+...|-...
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCC
Confidence 999987621 11111112 2345667899997665 78899999999999999522 2222223456777888885545
Q ss_pred EEEEEECCCeEEEee-CCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC-CCcEEEEecCCc
Q 014433 332 ILASCCLGRRLMVWD-LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE-DNILQIWQMAEN 407 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~ 407 (424)
++++.. ||.|.+|| .++...... ..+..-......+..++|+|..+.++++... .++|+++++...
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~---------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQ---------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHH---------HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 665554 99999999 443321110 0000000111248889999988777777664 568889888653
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.68 E-value=9.4e-06 Score=73.70 Aligned_cols=206 Identities=14% Similarity=0.206 Sum_probs=126.4
Q ss_pred EeccCCceeEEEecCCCCcEEEEEeCCC---------------eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc--ee-
Q 014433 121 QINHDGEVNRARYMPQNPFLIATKTVSA---------------EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GY- 182 (424)
Q Consensus 121 ~~~h~~~v~~~~~~p~~~~~latg~~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~- 182 (424)
++.|+ .|.-+.|+|.+. +|.+-+..+ .+.+||+.+ ...+..+..-..+ .+
T Consensus 68 ~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----------g~iv~sf~~~~q~~~~Wp 135 (561)
T COG5354 68 RFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----------GMIVFSFNGISQPYLGWP 135 (561)
T ss_pred eeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCceeEEeccC----------ceeEeeccccCCcccccc
Confidence 44444 567788888775 777765433 488999887 3334444443333 44
Q ss_pred EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCc-EEEE-----EeCCCeEEEEE
Q 014433 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY-LFGS-----VGDDQYLLIWD 256 (424)
Q Consensus 183 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~s-----~~~dg~i~i~d 256 (424)
-+.|+-++. ++|-- ....+.|+++ +.... ..+...+. ...|....|+|.+.+ .||. .+..+++++|.
T Consensus 136 ~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~--~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 136 VLKFSIDDK-YVARV-VGSSLYIHEI-TDNIE--EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeeeecch-hhhhh-ccCeEEEEec-CCccc--cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 577887665 44433 3457999997 32211 01111121 357888999997433 2332 35678899999
Q ss_pred cCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC----------CCcEEEEECCCCCCcceEecCCCCCEEEEEEc
Q 014433 257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST----------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s 326 (424)
+..+.. +....-....-..+.|++.|.++++-.-. ...++|++++. ..+.....-.++|...+|.
T Consensus 209 Ip~~s~---l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 209 IPKNSV---LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWE 283 (561)
T ss_pred ccCCCe---eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeec
Confidence 985543 33222233444678899999876554321 24688888885 2233332557899999999
Q ss_pred CCCCcEEEEE-ECCCeEEEeeCCCC
Q 014433 327 PKNETILASC-CLGRRLMVWDLSRI 350 (424)
Q Consensus 327 p~~~~~l~s~-~~dg~i~iwd~~~~ 350 (424)
|.++.+.+.. -.+..+.++|++..
T Consensus 284 p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 284 PLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccCCceeEEecccccceeecccccc
Confidence 9987643333 46778999998763
No 307
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=3.4e-07 Score=85.98 Aligned_cols=165 Identities=14% Similarity=0.162 Sum_probs=119.7
Q ss_pred CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC---------CcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
.....+++|+.... ++++|+.||.+++..+.+.... ..+..-+.+.+|...|.-+.|+.....+ .+...
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL-TtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL-TTSDT 91 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc-cccCC
Confidence 34578999998655 8999999999999988765432 2334455688999999999999887654 57788
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~ 328 (424)
+|.|.||-+-.+.-.... .-...++-|.+++|+.+|.. ++..-.||.|.+=.+.. ..+.--.........+.|+++
T Consensus 92 ~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdG--NRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDG--NRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecc--ceecchhcchheccceeeccc
Confidence 999999999876531111 11234677999999999985 88888899888877764 222111112234457999999
Q ss_pred CCcEEEEEECCCeEEEeeCCC
Q 014433 329 NETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.+. +..+-..|.+.++|...
T Consensus 168 ~~~-~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 168 LEQ-ALFKKANGETHLYDNQG 187 (1189)
T ss_pred HHH-HHhhhcCCcEEEecccc
Confidence 874 55677789999999754
No 308
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.64 E-value=2e-05 Score=71.14 Aligned_cols=200 Identities=11% Similarity=0.108 Sum_probs=114.6
Q ss_pred EEEecCCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433 130 RARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (424)
Q Consensus 130 ~~~~~p~~~~~latg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 208 (424)
.++++|+|+.++++--. +..|.+.|+.. .+.+..+.- .+...-...+. .. +.+-+.||......+
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~----------~kvv~ei~v-p~~~~vy~t~e-~~--~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEG----------KAFVRMMDV-PDCYHIFPTAN-DT--FFMHCRDGSLAKVGY 174 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCC----------CcEEEEEeC-CCCcEEEEecC-Cc--cEEEeecCceEEEEe
Confidence 78999999865554424 78999999987 333333332 11111122221 11 223344555555444
Q ss_pred CCCCCCCcccceeeeec-----CCccEeeEEEec-CCCcEEEEEeCCCeEEEEEcCCCCC--CCCeeeeec-------cC
Q 014433 209 NAAPKNKSLEAMQIFKV-----HEGVVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSV--SKPVQSVVA-------HQ 273 (424)
Q Consensus 209 ~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~s~~~dg~i~i~d~~~~~~--~~~~~~~~~-------~~ 273 (424)
....... ......+.. ...+ .|.+ ++..++++ ..|.|.+.|+..... ..++..+.. ..
T Consensus 175 d~~g~~~-~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 175 GTKGNPK-IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred cCCCceE-EeeeeeecCCccccccCC----ceEcCCCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCC
Confidence 4332211 111111111 0112 3455 77666644 339999999755332 111222111 23
Q ss_pred CCeeEEEecCCCCeEEEEEe---------CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC-cEEEEEECCCeEE
Q 014433 274 SEVNCLAFNPFNEWILATGS---------TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE-TILASCCLGRRLM 343 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~~l~s~~~dg~i~ 343 (424)
....-++++|+++++++... ..+.|.++|..+ .+.+..+.. ...+..++++|+++ .++++...++.|.
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 34445999999997666442 124799999998 677777665 56899999999998 5454555788899
Q ss_pred EeeCCCCCc
Q 014433 344 VWDLSRIDE 352 (424)
Q Consensus 344 iwd~~~~~~ 352 (424)
++|..+.+.
T Consensus 326 ViD~~t~k~ 334 (352)
T TIGR02658 326 IFDAETGKE 334 (352)
T ss_pred EEECcCCeE
Confidence 999988643
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1.2e-07 Score=56.33 Aligned_cols=38 Identities=29% Similarity=0.661 Sum_probs=35.0
Q ss_pred CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
+++.++.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788999999999999999985 899999999999997
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=8.1e-06 Score=78.72 Aligned_cols=198 Identities=16% Similarity=0.247 Sum_probs=124.9
Q ss_pred EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC-----eEEEEEcCC
Q 014433 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-----YLLIWDLRT 259 (424)
Q Consensus 185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-----~i~i~d~~~ 259 (424)
+|++.+. .++.|+.+|.|.+.+-. +..+..++.+...+...-|.-++..++++.+.|+ .++|||+..
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc-------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 3556555 79999999999888743 2234556666666333334444444555665554 599999976
Q ss_pred CCCCC-C--e--eeee-----ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC---CCCCCcceEecCCCCCEEEEEEc
Q 014433 260 PSVSK-P--V--QSVV-----AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL---RKISTALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 260 ~~~~~-~--~--~~~~-----~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~h~~~v~~~~~s 326 (424)
..... | + ..+. ....++.+++.+.+-. .+|+|..+|.|..+-= |..+....-....+.+|+.+++.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 42211 1 2 1111 1356788999998866 7999999999999842 22122222222346799999999
Q ss_pred CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
.++..++.++.. ..|.+|.+.... ..+..+..|...+++..+++.... +++++ +..+.+|+...
T Consensus 181 ~d~~s~lFv~Tt-~~V~~y~l~gr~-------------p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 181 SDGKSVLFVATT-EQVMLYSLSGRT-------------PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDG 244 (933)
T ss_pred cCCceeEEEEec-ceeEEEEecCCC-------------cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCC
Confidence 988764444443 359999987421 234456677777888888876653 44444 35688988875
Q ss_pred c
Q 014433 407 N 407 (424)
Q Consensus 407 ~ 407 (424)
.
T Consensus 245 ~ 245 (933)
T KOG2114|consen 245 R 245 (933)
T ss_pred c
Confidence 4
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1.7e-07 Score=55.66 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=35.2
Q ss_pred eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 365 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
+++..+.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788899999999999999988 799999999999997
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=1.7e-05 Score=73.86 Aligned_cols=133 Identities=18% Similarity=0.322 Sum_probs=94.6
Q ss_pred CCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEe----CCCe----EEEEeCCCCCCCCCCCCCCCCc-EEEecCCCce
Q 014433 111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT----VSAE----VYVFDYSKHPSKPPLDGACSPD-LRLRGHSTEG 181 (424)
Q Consensus 111 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~----~dg~----v~iw~~~~~~~~~~~~~~~~~~-~~~~~h~~~v 181 (424)
...++++++..+.-.....++.|+-..++.+.|-. .+|. -.+|++.. ...+.. .+-......|
T Consensus 191 ~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r--------~klqrvsvtsipL~s~v 262 (545)
T PF11768_consen 191 CSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR--------NKLQRVSVTSIPLPSQV 262 (545)
T ss_pred ecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec--------CceeEEEEEEEecCCcc
Confidence 34558888888888888899999986655555532 2343 34566654 111111 1223477889
Q ss_pred eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 182 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
.+++++|+.. .|+.|+.||+|.+||...+. .......-..+.++|||+|. +|++|+..|.+.+||+.-..
T Consensus 263 ~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~--------t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 263 ICCARSPSED-KLVLGCEDGSIILYDTTRGV--------TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred eEEecCcccc-eEEEEecCCeEEEEEcCCCe--------eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 9999999887 79999999999999997652 11222445678999999986 66799999999999987543
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.52 E-value=7.9e-05 Score=65.16 Aligned_cols=200 Identities=12% Similarity=0.120 Sum_probs=123.9
Q ss_pred EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEe-cCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-LRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 183 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
++.|.+....++++-...+.|..|+..++.. ..+.. . ....+++. +++ .++ .+.. +.+.++|+.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------~~~~~-~-~~~G~~~~~~~g-~l~-v~~~-~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------EVIDL-P-GPNGMAFDRPDG-RLY-VADS-GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------EEEES-S-SEEEEEEECTTS-EEE-EEET-TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------EEEec-C-CCceEEEEccCC-EEE-EEEc-CceEEEecCCCc
Confidence 6788885554667766789999999976521 11221 2 27777887 554 455 4444 445666988865
Q ss_pred CCCCeeeee--c-cCCCeeEEEecCCCCeEEEEEeCC--------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433 262 VSKPVQSVV--A-HQSEVNCLAFNPFNEWILATGSTD--------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 262 ~~~~~~~~~--~-~~~~v~~v~~~~~~~~~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 330 (424)
. ..+.... . .....+.+++.|+|. +.++.... |.|..++.. ++ +..+...-...+.++|+|+++
T Consensus 72 ~-~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 72 V-TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp E-EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSS
T ss_pred E-EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcch
Confidence 3 2233322 1 335678999999998 56665543 456666665 22 222222345678999999998
Q ss_pred cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.++++-+..+.|..+++........ ..+.+..+....+..-.+++..+|. +.++.-..+.|.+++....
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELS-------NRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEE-------EEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSC
T ss_pred heeecccccceeEEEecccccccee-------eeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCcc
Confidence 7777788889999999864321000 0122333333333467899999998 6777777899999998844
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=0.00037 Score=65.17 Aligned_cols=175 Identities=18% Similarity=0.265 Sum_probs=106.2
Q ss_pred cEeeEEEecCCCcEEEEE----eCCCe----EEEEEcCCCCCCCCee-eeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433 229 VVEDVAWHLRHEYLFGSV----GDDQY----LLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~----~~dg~----i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~ 299 (424)
...++.|+...++.+.+. +.+|. -.+|++...+. +.+. +-...++.|.|++++|+.. .|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence 345666766555544443 23343 34677665442 2222 2234678999999999888 589999999999
Q ss_pred EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE---EcCCCCC
Q 014433 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI---HGGHTSK 376 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~ 376 (424)
+||.... +..+....-.++.++|+|+|. ++++|+.-|.+.+||+.-......... ++..+..... +-.+...
T Consensus 285 LyD~~~~---~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls-Ed~~P~~~L~Ls~yf~~~~~ 359 (545)
T PF11768_consen 285 LYDTTRG---VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS-EDATPKSTLQLSKYFRVSSS 359 (545)
T ss_pred EEEcCCC---eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecc-ccCCCccEEeeehhccCcch
Confidence 9998762 223333456789999999995 899999999999999976543222111 1222222222 2234556
Q ss_pred cceEEeCCCCC------------cEEEEEeCCCcEEEEecCCccCC
Q 014433 377 ISDFSWNPCED------------WVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 377 v~~~~~~~~~~------------~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
+..+.|.+... .+++-.=+.|=+-+-.+..|...
T Consensus 360 L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~~ 405 (545)
T PF11768_consen 360 LVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVFT 405 (545)
T ss_pred hheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeecccc
Confidence 77888884321 12333334455555555555443
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.4e-07 Score=90.62 Aligned_cols=197 Identities=18% Similarity=0.237 Sum_probs=131.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC-
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA- 201 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg- 201 (424)
.|...-+|++|+-.. +.|++|+-.|.|++|++.+ ........+|..+|+-+.=+.+|..+|.+++...
T Consensus 1099 d~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s----------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS----------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccccceeeEEeecCC-ceEEeeeccceEEEEEccC----------ccccccccccccccccccccCCcceeeeeccccCc
Confidence 377889999999865 4899999999999999988 3444567889999999999988885555554444
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-eeeccCCCeeEEE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLA 280 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~ 280 (424)
-..+|++... ..+.+.+ ..-.++.|+......+ .|+.-....+||+.+........ ...+..-.-++..
T Consensus 1168 lsaLW~~~s~-----~~~~Hsf----~ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1168 LSALWDASST-----GGPRHSF----DEDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred hHHHhccccc-----cCccccc----cccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 5689998642 1222222 2446778877644333 45555678899999876422111 1111222337888
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|+|... +++ .|| .+||+|. .+.++.|..-+.. ..-.|+|+|..++ .. --|||+++.+...
T Consensus 1238 FsP~D~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~-~~G~FHP~g~eVI-IN-----SEIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1238 FSPCDT-LIL---NDG--VLWDVRI-PEAIHRFDQFTDY-GGGGFHPSGNEVI-IN-----SEIWDMRTFKLLH 1297 (1516)
T ss_pred cCCCcc-eEe---eCc--eeeeecc-HHHHhhhhhheec-ccccccCCCceEE-ee-----chhhhhHHHHHHh
Confidence 999887 342 455 4899998 4777777654422 2346999996544 32 3589999875443
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=0.00015 Score=72.86 Aligned_cols=206 Identities=15% Similarity=0.242 Sum_probs=123.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 205 (424)
+.|.++.|.-+.. -++.+...|.|.+-|..+ ........-...|.+++|+|+.. .++..+..+++.+
T Consensus 69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et-----------~~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN-SICVITALGDIILVDPET-----------LELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEecccc-eEEEEecCCcEEEEcccc-----------cceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEE
Confidence 5678888888665 566678889999988766 22223333556799999999988 6887777777765
Q ss_pred EeCC----CCCCC--------C--cc---cceeeeec---------------------CCccEeeEEEecCCCcEEEEE-
Q 014433 206 WDIN----AAPKN--------K--SL---EAMQIFKV---------------------HEGVVEDVAWHLRHEYLFGSV- 246 (424)
Q Consensus 206 wd~~----~~~~~--------~--~~---~~~~~~~~---------------------~~~~v~~~~~~~~~~~~~~s~- 246 (424)
-.-. ..+.. . .. +....+.+ ..+.=+.|.|--+|. +||+.
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~ 214 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSF 214 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEE
Confidence 4321 00000 0 00 00001111 111223588988886 44442
Q ss_pred ---eCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCC--CcceEecCCC
Q 014433 247 ---GDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKIS--TALHTFDSHK 317 (424)
Q Consensus 247 ---~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~---~dg~i~iwd~~~~~--~~~~~~~~h~ 317 (424)
..+ ..|+|||-. +.. .... ......-.+++|-|.|. ++|+-. .|+.|.+|.-.... .-...+....
T Consensus 215 ~~~~~~~RkirV~drE-g~L-ns~s--e~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GAL-NSTS--EPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EeccCCceeEEEeccc-chh-hccc--CcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 223 789999987 221 1111 11233446899999887 566643 35679999754321 1122233334
Q ss_pred CCEEEEEEcCCCCcEEEE---EECCCeEEEeeCCCCC
Q 014433 318 EEVFQVGWNPKNETILAS---CCLGRRLMVWDLSRID 351 (424)
Q Consensus 318 ~~v~~~~~sp~~~~~l~s---~~~dg~i~iwd~~~~~ 351 (424)
..|..++|+.++. +||+ ......|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 4599999999986 7776 4445569999987653
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.44 E-value=8.4e-05 Score=64.94 Aligned_cols=214 Identities=11% Similarity=0.120 Sum_probs=132.0
Q ss_pred eeEEEecCCCCceEEEEeCCCc-EEEEeCCCCCCCCcccc--eeeeecCCccEeeEEEecCCCcEEEEE----eCCCeEE
Q 014433 181 GYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLEA--MQIFKVHEGVVEDVAWHLRHEYLFGSV----GDDQYLL 253 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~----~~dg~i~ 253 (424)
..+++.+|.....++.+-.-|+ ..+||..++.....+.. -+.|.+| -.|+++++.|+++- ...|.|-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEE
Confidence 3467888866656677766665 67889988754322211 1223333 57999999887653 3468899
Q ss_pred EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEE-Ee----------------CCCcEEEEECCCCCCcceE--e-
Q 014433 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILAT-GS----------------TDKTVKLFDLRKISTALHT--F- 313 (424)
Q Consensus 254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~t-g~----------------~dg~i~iwd~~~~~~~~~~--~- 313 (424)
|||.+.. ...+..+..|.-...-+.+.|+++.+++. |+ .+.++.+.|.++ +..+.. +
T Consensus 81 Vyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp 157 (305)
T PF07433_consen 81 VYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELP 157 (305)
T ss_pred EEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecC
Confidence 9999832 33566777777777888999999754433 21 123455556665 555555 3
Q ss_pred -cCCCCCEEEEEEcCCCCcEEEEEECCCe-------EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 314 -DSHKEEVFQVGWNPKNETILASCCLGRR-------LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 314 -~~h~~~v~~~~~sp~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
..|...|..+++.++|. +++..-..|. |.+++.... .+.. ..+.... ..-.+.+-+|+++++
T Consensus 158 ~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~----~~p~~~~---~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA--LRLL----PAPEEQW---RRLNGYIGSIAADRD 227 (305)
T ss_pred ccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc--ceec----cCChHHH---HhhCCceEEEEEeCC
Confidence 33778899999999984 4444333321 222222110 0000 0000111 122456889999999
Q ss_pred CCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433 386 EDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 386 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 413 (424)
+..+.+|+-..|++.+||..++.+....
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 9966678779999999999998775443
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.40 E-value=0.0004 Score=59.82 Aligned_cols=205 Identities=12% Similarity=0.177 Sum_probs=114.5
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceeEEEecCCCCceEEEEeCCCc
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
-...+..|+|+|+...++|+....+.|..++.+. ..+..+.-. -+..-+|++..++. ++++.-.++.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~ 87 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQR 87 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCc
Confidence 3456999999998777999999999998888653 223333322 24577888876553 4444445899
Q ss_pred EEEEeCCCCCCCCcccceeee-----ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC--CCCCCCeeee------
Q 014433 203 ICLWDINAAPKNKSLEAMQIF-----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT--PSVSKPVQSV------ 269 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~--~~~~~~~~~~------ 269 (424)
+.++++..............+ ..+...+..++|++.+..+++ +-...-..+|.++. ..........
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccccccc
Confidence 999998554322111111111 124466899999999887874 45555666776654 1110001111
Q ss_pred eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC---------CCEEEEEEcCCCCcEEEEEECCC
Q 014433 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK---------EEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~---------~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
......+.+++++|....+++....+..|..+|.. ++++..+.... ...-.|+|.++|. |...+.-+
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEpN 242 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEPN 242 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTT
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCCc
Confidence 12334678999999988888888889999999944 56655554322 2467899999984 44555655
Q ss_pred eEEEe
Q 014433 341 RLMVW 345 (424)
Q Consensus 341 ~i~iw 345 (424)
..++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55444
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.39 E-value=7.4e-05 Score=74.00 Aligned_cols=146 Identities=21% Similarity=0.291 Sum_probs=96.9
Q ss_pred CCceEEEE-eCCCcEEEEeCCCCCCCCcccceeeeecCCcc-EeeEEEec-----CCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433 190 KEGHLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHL-----RHEYLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 190 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
...+|+.. .....|+-.|++.++. +..+..+... |.+++-.. .....| .|-.+..+..||.|-...
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKV------V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~ 564 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKV------VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGN 564 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcE------EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCC
Confidence 34444443 3457788889988844 4445545433 55554321 122344 677788999999997541
Q ss_pred CCCeee---eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433 263 SKPVQS---VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 263 ~~~~~~---~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
+.+.. .........|++-+.+| .||+|+.+|.|++||-- ..+....+.+-..+|..|..+.+|+++|||| +
T Consensus 565 -k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~ 638 (794)
T PF08553_consen 565 -KLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC--K 638 (794)
T ss_pred -ceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee--c
Confidence 11210 11245568888888877 49999999999999943 2445555667789999999999999877766 4
Q ss_pred CeEEEeeCC
Q 014433 340 RRLMVWDLS 348 (424)
Q Consensus 340 g~i~iwd~~ 348 (424)
..+.+++..
T Consensus 639 tyLlLi~t~ 647 (794)
T PF08553_consen 639 TYLLLIDTL 647 (794)
T ss_pred ceEEEEEEe
Confidence 568888764
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=3.3e-05 Score=74.09 Aligned_cols=191 Identities=12% Similarity=0.146 Sum_probs=126.3
Q ss_pred CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
..+.|++++ +. .|+-|..+|.|++++..... .....|+.. .-.|. .+++|+.||+|.|..+-
T Consensus 40 D~is~~av~--~~-~~~~GtH~g~v~~~~~~~~~--------~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DK-FFALGTHRGAVYLTTCQGNP--------KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cc-eeeeccccceEEEEecCCcc--------ccccccccc------ccCCc-eEEEecCCCcEEEeecc
Confidence 456667765 33 79999999999999986542 111224333 44565 56799999999999988
Q ss_pred CCCCCCCeeeeeccCCCeeEEEecCC----CCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCCCcEE
Q 014433 259 TPSVSKPVQSVVAHQSEVNCLAFNPF----NEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~l 333 (424)
+.+. ...+ ....++.+|+++|+ ....+++|+..| +.++.-+-.+.... .+..-.++|.++.|.. .++
T Consensus 102 ~~~~---~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lI 173 (846)
T KOG2066|consen 102 TDDE---ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLI 173 (846)
T ss_pred CCcc---ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEE
Confidence 8664 2222 34678999999997 223688999988 88876554333322 2455578999999973 478
Q ss_pred EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
|-++.+| |+|||+...........+...+ .....-..+.|.++.+ +++ |+..+|+|..++.+
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~--------R~e~fpphl~W~~~~~-LVI--GW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSV--------RPELFPPHLHWQDEDR-LVI--GWGDSVKICSIKKR 235 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCC--------CcccCCCceEecCCCe-EEE--ecCCeEEEEEEecc
Confidence 8888888 9999998765433222111000 0111235678988876 443 45557999988833
No 321
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.37 E-value=7.2e-05 Score=69.99 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=103.1
Q ss_pred EEecCCCceeEEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d 249 (424)
.+..-...+..-+|+|++..+....-.. ..+.+++++++...... . ..+.-..-+|+|+++.++.+...|
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~----~---~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL----N---FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee----c---cCCccCCccCCCCCCEEEEEECCC
Confidence 3444445667778999888644443322 35999999887553222 1 233445668999999998888888
Q ss_pred Ce--EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433 250 QY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 250 g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp 327 (424)
|. |.++|+..... ..+....+.-+.-.|+|+|++++.+.+..|.-.||-....+.....+......-..-.|+|
T Consensus 260 g~~~iy~~dl~~~~~----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 260 GSPDIYLMDLDGKNL----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCccEEEEcCCCCcc----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence 87 55557766552 2232223333366899999998888777786555544433333344443333333788999
Q ss_pred CCCcEEEEEECCCe--EEEeeCCCC
Q 014433 328 KNETILASCCLGRR--LMVWDLSRI 350 (424)
Q Consensus 328 ~~~~~l~s~~~dg~--i~iwd~~~~ 350 (424)
+|+.++.....+|. |.+.|+...
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCC
Confidence 99865555544555 555555543
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.5e-05 Score=75.40 Aligned_cols=209 Identities=14% Similarity=0.212 Sum_probs=122.6
Q ss_pred cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
|+..|.--++...+. +++.|++.|.+++|+.... ... .....+..+.+..+..+++.. ++|.|+..|.|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~--------~~~-~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V 100 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTG--------EMR-KLKNEGATGITCVRSVSSVEY-LVAAGTASGRV 100 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCch--------hhh-cccccCccceEEEEEecchhH-hhhhhcCCceE
Confidence 344444445555554 8999999999999998762 111 112222344566677787665 78899999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC-CCCCCCeeeeeccCCCeeEEEec
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
.++.++.............-..|+..|++++|++++..++ +|...|+|..-.+.. .....+.+.+..-.+.|..+...
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9999987543322211111234788999999999998776 999999999988876 22222334444456777777765
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCC--EEEEEEcCC---CCcEEEEEECCCeEEEeeCCCCC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEE--VFQVGWNPK---NETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~--v~~~~~sp~---~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
. .++|++... . -.+++... +. +..+. ..... -...+|-|. ++.-.+.|+.-| .|+|..+..+
T Consensus 180 q--~~LLVStl~-r-~~Lc~tE~-et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G 247 (726)
T KOG3621|consen 180 Q--SYLLVSTLT-R-CILCQTEA-ET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAG 247 (726)
T ss_pred c--ceehHhhhh-h-hheeecch-hH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecce
Confidence 3 344544433 2 23444432 11 11111 01111 234555553 122344455554 6788776543
No 323
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.23 E-value=0.00075 Score=58.55 Aligned_cols=214 Identities=12% Similarity=0.066 Sum_probs=116.7
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecC--CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014433 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 224 (424)
+|.|..||..+ .+.+....-- .....+... +.+. .+++++.++.|..||..+++.... ..
T Consensus 2 ~g~l~~~d~~t----------G~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~------~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRT----------GKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWR------FD 63 (238)
T ss_dssp TSEEEEEETTT----------TEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEE------EE
T ss_pred CCEEEEEECCC----------CCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEE------ee
Confidence 57788888765 2333333221 111221122 2244 588888999999999988743222 22
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee-eecc--CC---CeeEEEecCCCCeEEEEEeCCCcE
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS-VVAH--QS---EVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~-~~~~--~~---~v~~v~~~~~~~~~l~tg~~dg~i 298 (424)
. ...+...... .+..++ .++.++.|+.+|.++++. +-. .... .. ......+. +. .++++..++.|
T Consensus 64 ~-~~~~~~~~~~-~~~~v~-v~~~~~~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~l 134 (238)
T PF13360_consen 64 L-PGPISGAPVV-DGGRVY-VGTSDGSLYALDAKTGKV---LWSIYLTSSPPAGVRSSSSPAVD--GD-RLYVGTSSGKL 134 (238)
T ss_dssp C-SSCGGSGEEE-ETTEEE-EEETTSEEEEEETTTSCE---EEEEEE-SSCTCSTB--SEEEEE--TT-EEEEEETCSEE
T ss_pred c-cccccceeee-cccccc-cccceeeeEecccCCcce---eeeeccccccccccccccCceEe--cC-EEEEEeccCcE
Confidence 1 1111111122 233344 566788999999998875 332 1111 11 11223333 55 47777789999
Q ss_pred EEEECCCCCCcceEecCCCCC----------EEEEEEcCCCCcEEEEEECCCe-EEEeeCCCCCcccCCCCcCCCCCeee
Q 014433 299 KLFDLRKISTALHTFDSHKEE----------VFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 299 ~iwd~~~~~~~~~~~~~h~~~----------v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
..+|+++ ++.+......... +..-....++ .++.++.++. +.+ |+.++. .+
T Consensus 135 ~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~--------------~~ 196 (238)
T PF13360_consen 135 VALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGE--------------KL 196 (238)
T ss_dssp EEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTE--------------EE
T ss_pred EEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCC--------------EE
Confidence 9999998 6766666553322 1122222233 4556666664 555 888753 22
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.... ...+..+ ....+. .|+.++.++.|..||++++..
T Consensus 197 w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 197 WSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTEE
T ss_pred EEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCCE
Confidence 3222 2223332 334556 455556899999999998753
No 324
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00022 Score=66.81 Aligned_cols=189 Identities=14% Similarity=0.156 Sum_probs=111.7
Q ss_pred CceeEEEecCCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 126 GEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
..+..-+|+|++..+....-.. ..++++++.. +....+..+.++ -..-+|+|+|+.++++...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--------g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--------GKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccC--------CccceeeccCCc---cCCccCCCCCCEEEEEECCCCC
Confidence 4556678888887544432222 3588899887 223333333443 3467899999987888888887
Q ss_pred EEEE--eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccCCCeeE
Q 014433 203 ICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 203 i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
..|| |+..... ..+....+.-..=.|+|+|+.++.+.+..|.-.|| |+..... ..+......-..
T Consensus 262 ~~iy~~dl~~~~~-------~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~ 330 (425)
T COG0823 262 PDIYLMDLDGKNL-------PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSN 330 (425)
T ss_pred ccEEEEcCCCCcc-------eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcC
Confidence 5555 5554431 11222222233667999999998888888875555 4444332 222222222237
Q ss_pred EEecCCCCeEEEEEeCCCc--EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433 279 LAFNPFNEWILATGSTDKT--VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~--i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
-.|+|+|.+++..+..+|. |.+.|+.+... .+.+. +......-.|.|++..++.+++.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 7899999976666644555 67777766332 33332 34445566778888654444443
No 325
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.16 E-value=0.0013 Score=61.46 Aligned_cols=217 Identities=13% Similarity=0.028 Sum_probs=116.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-----eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-----YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN 214 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 214 (424)
.++.++.+|.++.||..+ .+.+.......... .+.... +. .++.+..+|.+..+|++++...
T Consensus 147 ~v~v~~~~g~l~a~d~~t----------G~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAAT----------GERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred EEEEECCCCeEEEEEcCC----------CceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEe
Confidence 455567789999999876 22222222111110 011111 22 5778888899999999877543
Q ss_pred CcccceeeeecCC--cc---E-eeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeE
Q 014433 215 KSLEAMQIFKVHE--GV---V-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWI 288 (424)
Q Consensus 215 ~~~~~~~~~~~~~--~~---v-~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 288 (424)
..... ....+.. .. + ....+. +..++ +++.+|.++.+|.++++. +-... .. ....... .+. .
T Consensus 214 W~~~~-~~~~g~~~~~~~~~~~~~p~~~--~~~vy-~~~~~g~l~a~d~~tG~~---~W~~~-~~-~~~~p~~--~~~-~ 281 (377)
T TIGR03300 214 WEQRV-ALPKGRTELERLVDVDGDPVVD--GGQVY-AVSYQGRVAALDLRSGRV---LWKRD-AS-SYQGPAV--DDN-R 281 (377)
T ss_pred eeecc-ccCCCCCchhhhhccCCccEEE--CCEEE-EEEcCCEEEEEECCCCcE---EEeec-cC-CccCceE--eCC-E
Confidence 22110 0000000 00 0 011111 33444 677899999999988764 22221 11 1112222 244 4
Q ss_pred EEEEeCCCcEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433 289 LATGSTDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 289 l~tg~~dg~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
+++++.+|.+..+|..+ ++.+..... ......+... .+. .+++++.+|.|.++|..++ +.+
T Consensus 282 vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG--------------~~~ 343 (377)
T TIGR03300 282 LYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDG--------------SFV 343 (377)
T ss_pred EEEECCCCeEEEEECCC-CcEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCC--------------CEE
Confidence 66778899999999987 555443321 1112222222 233 6788899999999998875 344
Q ss_pred EEEcCCCCCcc-eEEeCCCCCcEEEEEeCCCcEEEE
Q 014433 368 FIHGGHTSKIS-DFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 368 ~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vw 402 (424)
.....+...+. ...+. +++ |+.++.||.|+.|
T Consensus 344 ~~~~~~~~~~~~sp~~~-~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 344 ARLKTDGSGIASPPVVV-GDG--LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEcCCCccccCCEEE-CCE--EEEEeCCceEEEe
Confidence 44444433222 22232 333 5566789988776
No 326
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.16 E-value=0.0015 Score=61.16 Aligned_cols=230 Identities=13% Similarity=0.025 Sum_probs=120.0
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 219 (424)
.+++++.+|.++.+|..+ .+....... ...+.+.-.. .+. .++.++.+|.|..||.++++.......
T Consensus 107 ~v~v~~~~g~l~ald~~t----------G~~~W~~~~-~~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAED----------GKELWRAKL-SSEVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred EEEEEcCCCEEEEEECCC----------CcEeeeecc-CceeecCCEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 566778899999999876 222222221 1122111111 133 577788899999999988754332211
Q ss_pred eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-CC---eeEEEecC--CCCeEEEEEe
Q 014433 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SE---VNCLAFNP--FNEWILATGS 293 (424)
Q Consensus 220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~---v~~v~~~~--~~~~~l~tg~ 293 (424)
.......... ...... + . .++.+..+|.+..+|+++++............ .. +..+.-+| .+. .+.+++
T Consensus 174 ~~~~~~~~~~-~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~vy~~~ 248 (377)
T TIGR03300 174 VTPALTLRGS-ASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QVYAVS 248 (377)
T ss_pred CCCceeecCC-CCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EEEEEE
Confidence 0000000000 111111 2 2 34577788999999998876421111000000 00 00010011 134 466777
Q ss_pred CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC
Q 014433 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373 (424)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 373 (424)
.+|.++.||..+ ++.+..... . ....... .+. .++.++.+|.+..+|..++.. +......
T Consensus 249 ~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~--------------~W~~~~~ 308 (377)
T TIGR03300 249 YQGRVAALDLRS-GRVLWKRDA-S-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE--------------LWKNDEL 308 (377)
T ss_pred cCCEEEEEECCC-CcEEEeecc-C-CccCceE--eCC-EEEEECCCCeEEEEECCCCcE--------------EEccccc
Confidence 899999999987 555444332 1 1122222 233 466778899999999987642 2211110
Q ss_pred -CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 374 -TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 374 -~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
......... .+. .+++++.+|.|++++..++.+.
T Consensus 309 ~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 309 KYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred cCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEE
Confidence 111122222 244 5777889999999999877553
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.11 E-value=0.00064 Score=68.64 Aligned_cols=204 Identities=14% Similarity=0.270 Sum_probs=123.9
Q ss_pred CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
..|.++.|..+.. -++.+..+|.|.+-|..+.. +.....-...|.+++|+|++. +++..+..+++.+-+-.
T Consensus 69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~-------~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN-SICVITALGDIILVDPETLE-------LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKD 139 (1265)
T ss_pred cceEEEEEecccc-eEEEEecCCcEEEEcccccc-------eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEecc
Confidence 5899999998877 48888889999999876642 222334567899999999987 55566666676654321
Q ss_pred ----CCCC--------CCCe--------eeeec---------------------cCCCeeEEEecCCCCeEEEEEe----
Q 014433 259 ----TPSV--------SKPV--------QSVVA---------------------HQSEVNCLAFNPFNEWILATGS---- 293 (424)
Q Consensus 259 ----~~~~--------~~~~--------~~~~~---------------------~~~~v~~v~~~~~~~~~l~tg~---- 293 (424)
..+. .+.+ ..+.+ ..+.=++|.|--+|+ ++|+..
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~ 218 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESE 218 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEecc
Confidence 0000 0000 01110 111234689999998 466622
Q ss_pred CC-CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE---CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE
Q 014433 294 TD-KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC---LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI 369 (424)
Q Consensus 294 ~d-g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 369 (424)
.+ +.|++||-. +..-.+-....+.-.+++|-|.|. ++++-. .|+.|.+|.-+..... .....
T Consensus 219 ~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg-----------~f~l~ 284 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHG-----------EFVLP 284 (1265)
T ss_pred CCceeEEEeccc--chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCcccc-----------ccccC
Confidence 23 789999966 222222222233446799999885 666653 3567888886543211 11111
Q ss_pred EcCCCCCcceEEeCCCCCcEEEE---EeCCCcEEEEecCCc
Q 014433 370 HGGHTSKISDFSWNPCEDWVISS---VAEDNILQIWQMAEN 407 (424)
Q Consensus 370 ~~~h~~~v~~~~~~~~~~~~l~s---~~~dg~i~vw~~~~~ 407 (424)
..-....+..++|+.++. +|+. ......|++|-+..-
T Consensus 285 ~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 111223489999999998 6665 445555999987653
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.00019 Score=66.49 Aligned_cols=258 Identities=13% Similarity=0.131 Sum_probs=130.0
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC------CC---------------------------CCCCCCcEE
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP------PL---------------------------DGACSPDLR 173 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~------~~---------------------------~~~~~~~~~ 173 (424)
.|+.+.|++... -||+|..+|.|.||......... .. .....|..-
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578899999765 68889999999999876432211 00 001223333
Q ss_pred EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee--eeecCCccEeeEEEec---CC----CcEEE
Q 014433 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--IFKVHEGVVEDVAWHL---RH----EYLFG 244 (424)
Q Consensus 174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~---~~----~~~~~ 244 (424)
+....++|++++.+.-| +++.|..+|.+.|.|++............ ........++++.|.- .+ .-++.
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 44557899999997543 79999999999999997653221100000 0111334677888752 11 13455
Q ss_pred EEeCCCeEEEEEcCC-CCCC---CCeeeeeccCCCeeEEE-ecCC-C-------------------CeEEEEEeCCCcEE
Q 014433 245 SVGDDQYLLIWDLRT-PSVS---KPVQSVVAHQSEVNCLA-FNPF-N-------------------EWILATGSTDKTVK 299 (424)
Q Consensus 245 s~~~dg~i~i~d~~~-~~~~---~~~~~~~~~~~~v~~v~-~~~~-~-------------------~~~l~tg~~dg~i~ 299 (424)
+|...|.+.+|.+.- .... ........+.++|..|. ++.+ | +.++++ ..+..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceE
Confidence 888999999998852 1110 01111124556666554 3221 1 113333 3467899
Q ss_pred EEECCCCCCcceEecCCCCCEEEEEEcC----CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC---
Q 014433 300 LFDLRKISTALHTFDSHKEEVFQVGWNP----KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG--- 372 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--- 372 (424)
++...+ .+..+...........+.+-+ .+...|++-..+|.|++|.+...++. ....-
T Consensus 239 v~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei--------------~~~~l~~~ 303 (395)
T PF08596_consen 239 VFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI--------------KSVSLPPP 303 (395)
T ss_dssp EE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE--------------EEEE-SS-
T ss_pred EEeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh--------------hcccCCCc
Confidence 999887 344433332222334444531 23357888899999999999876432 11111
Q ss_pred -CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 373 -HTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 373 -h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
+...+....++++|. +++-.+ ...+.++.+-
T Consensus 304 ~d~~~~~~ssis~~Gd-i~~~~g-psE~~l~sv~ 335 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGD-IFYWTG-PSEIQLFSVW 335 (395)
T ss_dssp --HHHHTT-EE-TTS--EEEE-S-SSEEEEEEEE
T ss_pred cccccccccEECCCCC-EEEEeC-cccEEEEEEE
Confidence 223456778889998 454444 3345555443
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.07 E-value=0.0061 Score=56.38 Aligned_cols=252 Identities=15% Similarity=0.131 Sum_probs=126.4
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---------CceeEEEecCCCCceEE
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---------TEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~l~ 195 (424)
...+....|+|++. .+|.. .++.|++++........- ..... ...+.|-. +.-.++-|||++..+++
T Consensus 42 ~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~~~~~~~~l-T~dg~-~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 42 PPKLQDAKWSPDGK-YIAFV-RDNNLYLRDLATGQETQL-TTDGE-PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp ETTBSEEEE-SSST-EEEEE-ETTEEEEESSTTSEEEES-ES--T-TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred ccccccceeecCCC-eeEEE-ecCceEEEECCCCCeEEe-ccccc-eeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 56788899999987 45554 467999998765211000 00000 00111111 12357889999885333
Q ss_pred EEeCCCcEEE-----------------------------------EeCCCCCCCCcccceeeeecCCccEeeEEEecCCC
Q 014433 196 SGSDDAQICL-----------------------------------WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240 (424)
Q Consensus 196 s~~~dg~i~i-----------------------------------wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 240 (424)
.--.+..|.. +|+.+++.. .+........-...+..+.|.+++.
T Consensus 118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTE
T ss_pred EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCc
Confidence 3333333332 333322211 0000001122345678899999887
Q ss_pred cEE-EEEeCCC---eEEEEEcCCCCCCCCeeeeeccCCCe---eEEEec-CCCCeEEEEEeCCCcEEEEECCCCCCcceE
Q 014433 241 YLF-GSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSEV---NCLAFN-PFNEWILATGSTDKTVKLFDLRKISTALHT 312 (424)
Q Consensus 241 ~~~-~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v---~~v~~~-~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 312 (424)
.++ .....+. .+.++|..++... .+. .......| ..+.|. +++..+|.....+|.-+||-+...+.....
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~-~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~ 274 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETR-VVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ 274 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCE-EEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred EEEEEEcccCCCEEEEEEEECCCCcee-EEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence 343 3333332 3667787765531 111 11222222 345554 667667777778886555544433444556
Q ss_pred ecCCCCCEEE-EEEcCCCCcEEEEEECCC--eEEEeeCCCC-CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014433 313 FDSHKEEVFQ-VGWNPKNETILASCCLGR--RLMVWDLSRI-DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 313 ~~~h~~~v~~-~~~sp~~~~~l~s~~~dg--~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 388 (424)
+....-.|.. +.|++.++.++.++..++ .-.||.+... . ..+..+......-..+.|+|++++
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-------------~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-------------GEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-------------TEEEESSTTSSTTEEEEE-TTSSE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-------------CCeEeccCCCCCceEEEECCCCCE
Confidence 6655667755 778888877777777633 3444443322 1 112222322222258999999998
Q ss_pred EEEEEeCC
Q 014433 389 VISSVAED 396 (424)
Q Consensus 389 ~l~s~~~d 396 (424)
++.+++.-
T Consensus 342 ~v~~~s~~ 349 (353)
T PF00930_consen 342 YVDTYSGP 349 (353)
T ss_dssp EEEEEESS
T ss_pred EEEEEcCC
Confidence 88777653
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00037 Score=67.60 Aligned_cols=109 Identities=16% Similarity=0.291 Sum_probs=79.2
Q ss_pred eEEEecCCCCcEEEEEeC----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433 129 NRARYMPQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
+-+.|+|..+ ++|+++. .|.|-||--... .....+..-| +++++|+|..- +|+.|-.-|.+.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE---------Pqr~Vt~P~h---atSLCWHpe~~-vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGE---------PQRDVTYPVH---ATSLCWHPEEF-VLAQGWEMGVSD 84 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecCCC---------CCccccccee---hhhhccChHHH-HHhhccccceeE
Confidence 4467999887 7777763 588988865431 1111122223 56799999665 789999999999
Q ss_pred EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
+|..++... -.....|+.+|..+.|+++|..+ +++..-|.+.+|...
T Consensus 85 v~~~~~~e~------htv~~th~a~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 85 VQKTNTTET------HTVVETHPAPIQGLDWSHDGTVL-MTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEecCCcee------eeeccCCCCCceeEEecCCCCeE-EEcCCCceeEEEEee
Confidence 999876532 22344699999999999999754 599999999999776
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.04 E-value=0.0066 Score=52.36 Aligned_cols=206 Identities=14% Similarity=0.172 Sum_probs=111.5
Q ss_pred EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC-CccEeeEEEecCCCcEEEEEeCCCe
Q 014433 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQY 251 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~dg~ 251 (424)
.+.+-...+.+|+|+|+...++++....+.|..++.+ ++ .++.+.-. .+....|++..++. ++++--.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~------vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK------VLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQR 87 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC------EEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCc
Confidence 3445556799999999877678888888898888874 32 22222222 35678889886664 3334445899
Q ss_pred EEEEEcCCCCCCCCee---ee-----eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC--CCCcceE--------e
Q 014433 252 LLIWDLRTPSVSKPVQ---SV-----VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK--ISTALHT--------F 313 (424)
Q Consensus 252 i~i~d~~~~~~~~~~~---~~-----~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~--------~ 313 (424)
+.++++.......... .+ ..+...+-.++|+|.+..++++ -...-..+|.++. ....+.. .
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccc
Confidence 9999985433211111 11 1244568999999988865554 4555566666553 1111111 1
Q ss_pred cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-C------CCCcceEEeCCCC
Q 014433 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-H------TSKISDFSWNPCE 386 (424)
Q Consensus 314 ~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h------~~~v~~~~~~~~~ 386 (424)
...-..+.+++++|....+++.+..+..|.++|... .. .-...+.. . -...-+++|.++|
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~------------~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-RV------------VSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---E------------EEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-CE------------EEEEEeCCcccCcccccCCccEEEECCCC
Confidence 123346789999998888888888899999998433 21 11122221 1 1235689999999
Q ss_pred CcEEEEEeCCCcEEEE
Q 014433 387 DWVISSVAEDNILQIW 402 (424)
Q Consensus 387 ~~~l~s~~~dg~i~vw 402 (424)
+ +.++ ++-+..+++
T Consensus 234 ~-LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 234 N-LYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEE-ETTTEEEEE
T ss_pred C-EEEE-cCCceEEEe
Confidence 8 4444 677766665
No 332
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.02 E-value=0.0089 Score=56.71 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=131.7
Q ss_pred eeEEEecCCCCcEEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceeEEEecCCCCceEEEEeCC--
Q 014433 128 VNRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDD-- 200 (424)
Q Consensus 128 v~~~~~~p~~~~~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 200 (424)
+...+++|+++.++.+-+..| .++++|+.+ ...+. .+.. .....+.|.+++..++++...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t----------g~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET----------GKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT----------TEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTT
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC----------CcCcCCcccc--cccceEEEeCCCCEEEEEEeCccc
Confidence 335788999986555545545 599999987 22111 1111 1123499999988656665433
Q ss_pred --------CcEEEEeCCCCCCCCcccceeeeecCCcc--EeeEEEecCCCcEEEEEeCCC---eEEEEEcCCCC-CCCCe
Q 014433 201 --------AQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPS-VSKPV 266 (424)
Q Consensus 201 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~s~~~dg---~i~i~d~~~~~-~~~~~ 266 (424)
..|..|.+.+.... ....+...... ...+..+++++.+++...... .+.+.|+.... .....
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSE----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred ccccCCCCcEEEEEECCCChHh----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 23778888665321 12233333322 567889999998887665444 47888887741 11123
Q ss_pred eeeeccCCCee-EEEecCCCCeEEEEEeC---CCcEEEEECCCCCC--cceEecCCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433 267 QSVVAHQSEVN-CLAFNPFNEWILATGST---DKTVKLFDLRKIST--ALHTFDSHKEEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 267 ~~~~~~~~~v~-~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
..+......+. .+... +..+++.... .+.|.-.++..... ....+..+...+.-..+...+..+++....++
T Consensus 270 ~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 33333333443 34443 3334443322 45777788887442 12245555554333333344555777777776
Q ss_pred e--EEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CCCCCcceEEeCCCCCcEEEEEe---CCCcEEEEecCCccC
Q 014433 341 R--LMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GHTSKISDFSWNPCEDWVISSVA---EDNILQIWQMAENIY 409 (424)
Q Consensus 341 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~vw~~~~~~~ 409 (424)
. |+++++..+ ....... .-.+.|..+...++++.+.++.+ .-+++..||+.++.+
T Consensus 348 ~~~l~v~~~~~~--------------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 348 SSRLRVYDLDDG--------------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETT-T--------------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ccEEEEEECCCC--------------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4 778888711 1122211 12333566666666665555544 244677788877654
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=1.2e-05 Score=77.84 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=113.6
Q ss_pred cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-
Q 014433 218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK- 296 (424)
Q Consensus 218 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg- 296 (424)
+..+.+..|....+|++|+-..+++ +.|+..|.|++|++.++.. ......|.++|+-+.-+.+|..+|.+++...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL-~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHL-AVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceE-EeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccCc
Confidence 4556677788999999999887655 6999999999999999875 5566789999999999999996555555444
Q ss_pred cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC
Q 014433 297 TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK 376 (424)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 376 (424)
-..+|++.....+.+++... .++.|+..... -+.|+......|||+.+....++.-.. ..+....
T Consensus 1168 lsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~----------~~~~~y~ 1232 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDED----KAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTD----------TVTSSYS 1232 (1516)
T ss_pred hHHHhccccccCcccccccc----ceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCc----------chhhhhh
Confidence 57899998877788777653 46788776432 333444456899999987643321110 0011112
Q ss_pred cceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 377 ISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 377 v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
-+.+.|+|+.. +|. .|| .+||+...
T Consensus 1233 ~n~a~FsP~D~-LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSPCDT-LIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ccccccCCCcc-eEe---eCc--eeeeeccH
Confidence 25567888777 443 355 35776543
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.017 Score=53.95 Aligned_cols=246 Identities=11% Similarity=0.096 Sum_probs=152.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 206 (424)
....+.+.|++..+.++-.....+.+.+... .........-......++.++.+....+....+..|.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~----------n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vi 101 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS----------NTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVI 101 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc----------ceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEE
Confidence 5667788888865555544444444444331 000011111113345778888888666667677999999
Q ss_pred eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe--CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 284 (424)
|.......... . -......+++++++..+.++-. .++.+.+.|..+... +........+ ..++++|+
T Consensus 102 d~~~~~~~~~~------~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---~~~~~vG~~P-~~~a~~p~ 170 (381)
T COG3391 102 DTATNTVLGSI------P-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---TATIPVGNTP-TGVAVDPD 170 (381)
T ss_pred cCcccceeeEe------e-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE---EEEEecCCCc-ceEEECCC
Confidence 97655332111 1 1226678999999988887777 478899999888664 3333332334 88999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcce-E---ecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCCCCcccCCCC
Q 014433 285 NEWILATGSTDKTVKLFDLRKISTALH-T---FDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~-~---~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~ 358 (424)
+..++++-..++.|.++|... ..... . ...-...-..+.++|++..+.++...+ +.+...|.....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------- 242 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------- 242 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-------
Confidence 997777777899999999775 22221 0 011123456799999997655555554 588888887642
Q ss_pred cCCCCCeeeEE--EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 359 AEDGPPELLFI--HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 359 ~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
.... ..+.. ....+..+|++.+..+.-+..+.+.+-|..+..+
T Consensus 243 -------v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 243 -------VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred -------EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 1111 11111 3567889999996444445567888888777544
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.91 E-value=0.0031 Score=59.46 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=85.8
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc
Q 014433 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG 228 (424)
Q Consensus 149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 228 (424)
.|+.+|+..................+.........+.++|++. .+++ ..||...|+..... +. ...+
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~---------r~--k~~G 69 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAW---------RN--KAFG 69 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTT---------EE--EEEE
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCC---------cc--cccC
Confidence 4666666653221111111223344555556688999999887 4555 55788888873221 11 1235
Q ss_pred cEeeEEEecCCCcEEEEEeCCCeEEEE-EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014433 229 VVEDVAWHLRHEYLFGSVGDDQYLLIW-DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS 307 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~ 307 (424)
....++|.+.+ -+|+-...+.|.|+ ++.... .+.+. . ...+..|-. |. +|+..+. +.|.+||+.+ +
T Consensus 70 ~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~-~k~i~---~-~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~-~ 136 (443)
T PF04053_consen 70 SGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV-VKSIK---L-PFSVEKIFG---GN-LLGVKSS-DFICFYDWET-G 136 (443)
T ss_dssp E-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T-T---------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT--
T ss_pred ceeEEEEecCc--cEEEEECCCeEEEEEcCcccc-ceEEc---C-CcccceEEc---Cc-EEEEECC-CCEEEEEhhH-c
Confidence 66788899854 36677778899996 333222 11121 1 122344433 65 5555554 4899999998 6
Q ss_pred CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+.+..+... +|..+.|++++. ++|..+.+ .+.|++...
T Consensus 137 ~~i~~i~v~--~vk~V~Ws~~g~-~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 137 KLIRRIDVS--AVKYVIWSDDGE-LVALVTKD-SIYILKYNL 174 (443)
T ss_dssp -EEEEESS---E-EEEEE-TTSS-EEEEE-S--SEEEEEE-H
T ss_pred ceeeEEecC--CCcEEEEECCCC-EEEEEeCC-eEEEEEecc
Confidence 888888753 489999999996 56666655 588877654
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.001 Score=63.84 Aligned_cols=109 Identities=12% Similarity=0.221 Sum_probs=76.7
Q ss_pred ecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC------
Q 014433 236 HLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST------ 308 (424)
Q Consensus 236 ~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~------ 308 (424)
.++++..++ .++.|.+.|.++... ...+...-.-......++++|+|+++++++..+.+|.|+|+.+...
T Consensus 285 vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 456765553 367899999987100 0012333334567788999999999888888999999999987442
Q ss_pred -----cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 309 -----ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 309 -----~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.+..... .......+|.++|. .+.|...|..|..|++..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 1223332 33445788999984 778888899999999876
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.90 E-value=0.022 Score=53.62 Aligned_cols=177 Identities=12% Similarity=0.129 Sum_probs=88.5
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc-ceeeeecCC
Q 014433 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE-AMQIFKVHE 227 (424)
Q Consensus 149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~ 227 (424)
.|+||+... ..+..+.-..+.+.++.|..+. .|++-..||.++++|+.... ...+. .........
T Consensus 62 ~I~iys~sG-----------~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e 127 (410)
T PF04841_consen 62 SIQIYSSSG-----------KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLE 127 (410)
T ss_pred EEEEECCCC-----------CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCccc
Confidence 488998775 3344433333889999998854 37778899999999986432 10010 000011111
Q ss_pred ccEeeEEEecCCCcEEEEEeCCCeEEEEEc-CCCCCCCCeeeeec-----cCC-CeeE-EEecCCCCeEEEEEeCCCcEE
Q 014433 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDL-RTPSVSKPVQSVVA-----HQS-EVNC-LAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 228 ~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~-~~~~~~~~~~~~~~-----~~~-~v~~-v~~~~~~~~~l~tg~~dg~i~ 299 (424)
..+....+...| ++ .-..++.+.+..- ......+....... +.. .... ..++.+.. ..+....++.+.
T Consensus 128 ~~i~~~~~~~~G--iv-vLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~ 203 (410)
T PF04841_consen 128 CRIFAIWFYKNG--IV-VLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIY 203 (410)
T ss_pred ccccccccCCCC--EE-EECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEE
Confidence 222222333233 22 2233444444322 21100000000000 000 1111 22333333 333444455666
Q ss_pred EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+.+-... .. +. ..+++..++.||+++ ++|.-..+|.+.|.....
T Consensus 204 ~i~~~~~-~~---i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 204 IIDENSF-KQ---ID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDF 247 (410)
T ss_pred EEEcccc-cc---cc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcc
Confidence 5543321 11 22 246899999999996 788888899988886544
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0097 Score=55.55 Aligned_cols=207 Identities=14% Similarity=0.078 Sum_probs=133.4
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe--CCCcE
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS--DDAQI 203 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i 203 (424)
.....++.++.+....++...++.|.+.|... ....... .-......+++++++..+.++-. .++++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~----------~~~~~~~-~vG~~P~~~~~~~~~~~vYV~n~~~~~~~v 142 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT----------NTVLGSI-PVGLGPVGLAVDPDGKYVYVANAGNGNNTV 142 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc----------cceeeEe-eeccCCceEEECCCCCEEEEEecccCCceE
Confidence 34457788888887788777789999999655 1111111 12225678999999885444444 36888
Q ss_pred EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC-CeeeeeccCCCeeEEEec
Q 014433 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~v~~~ 282 (424)
.+.|..+.... .....-..+ ..+++.|++..++++-..++.|.+.|........ .......-......+.++
T Consensus 143 svid~~t~~~~------~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~ 215 (381)
T COG3391 143 SVIDAATNKVT------ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD 215 (381)
T ss_pred EEEeCCCCeEE------EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEEC
Confidence 88888766332 222211233 8899999999888777789999999977654321 000011223345678899
Q ss_pred CCCCeEEEEEeCC--CcEEEEECCCCCCcceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 283 PFNEWILATGSTD--KTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 283 ~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|++.++.++-..+ +.+...|..+ +..... ..........+..+|.+..+.+.-+..+.+.+-|.....
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 9999766665554 6899999887 333332 222111566789999997555444556888888887643
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.85 E-value=0.00098 Score=66.30 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=97.0
Q ss_pred CCcEEE-EEeCCCeEEEEEcCCCCCCCCeeeeeccCCC-eeEEEecC-----CCCeEEEEEeCCCcEEEEECCCCCCcce
Q 014433 239 HEYLFG-SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VNCLAFNP-----FNEWILATGSTDKTVKLFDLRKISTALH 311 (424)
Q Consensus 239 ~~~~~~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~v~~~~-----~~~~~l~tg~~dg~i~iwd~~~~~~~~~ 311 (424)
...+++ .......|+-.|+..++. +..+..+... |..++-.. ... -...|-.+..+..||.|-.+..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKV---V~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKV---VEEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcE---EEEeecCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCcee
Confidence 334443 334567899999999886 6677666543 55554321 122 245677888999999997543322
Q ss_pred EecC----CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433 312 TFDS----HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 312 ~~~~----h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
.-.. .....+|++-+.+| .||.|+.+|.||+||-- +. +....+.+-..+|.++..+.||+
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~-------------~AKT~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK-------------RAKTALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred eccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch-------------hhhhcCCCCCCCeeEEEecCCCc
Confidence 2122 24456788877777 59999999999999942 21 22223345568999999999999
Q ss_pred cEEEEEeCCCcEEEEecC
Q 014433 388 WVISSVAEDNILQIWQMA 405 (424)
Q Consensus 388 ~~l~s~~~dg~i~vw~~~ 405 (424)
|+|+|+ +..|.+.+..
T Consensus 632 wilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 632 WILATC--KTYLLLIDTL 647 (794)
T ss_pred EEEEee--cceEEEEEEe
Confidence 988875 4578887763
No 340
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.0008 Score=62.26 Aligned_cols=140 Identities=17% Similarity=0.329 Sum_probs=90.1
Q ss_pred eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-----------CC
Q 014433 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------DD 249 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------~d 249 (424)
=+-+.|||.|. +|++--..| |.+|--..- ..++.+. | ..|.-+.|||...+|+ +-+ ..
T Consensus 213 etyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f------~r~~RF~-H-p~Vq~idfSP~EkYLV-T~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFHKQG-IALWGGESF------DRIQRFY-H-PGVQFIDFSPNEKYLV-TYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeEEecCCce-EEEEEeccc-eeeecCccH------HHHHhcc-C-CCceeeecCCccceEE-EecCCccccCcccCCC
Confidence 35689999998 788876654 778854332 2222222 4 3588899999988665 533 22
Q ss_pred CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC
Q 014433 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~ 329 (424)
..++|||++++...+....+......-.-+.|+.++.+ +|.-.. .+|.||+..+ -.++..-...-..|....|+|.+
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy-~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY-FARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCce-eEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCc
Confidence 57999999998864444333222223344689998884 666554 5799998776 23332222334678999999987
Q ss_pred CcEEEE
Q 014433 330 ETILAS 335 (424)
Q Consensus 330 ~~~l~s 335 (424)
. +||-
T Consensus 359 ~-llAY 363 (698)
T KOG2314|consen 359 N-LLAY 363 (698)
T ss_pred c-eEEE
Confidence 4 5653
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00055 Score=66.48 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=59.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 206 (424)
.+++++|+|.. .+||.|-.-|.+.+|.... ...-.....|+.+|..+.||++|. .++++..-|.|.+|
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~----------~e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lw 128 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNT----------TETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLW 128 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCC----------ceeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEE
Confidence 45569999965 5899999999999999876 222233446999999999999998 79999999999999
Q ss_pred eCCC
Q 014433 207 DINA 210 (424)
Q Consensus 207 d~~~ 210 (424)
....
T Consensus 129 r~d~ 132 (1416)
T KOG3617|consen 129 RYDV 132 (1416)
T ss_pred Eeee
Confidence 8763
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.0028 Score=58.88 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=111.2
Q ss_pred ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC-------------------------------------cccceee
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-------------------------------------SLEAMQI 222 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------------------~~~~~~~ 222 (424)
.|+.+.|.+... -|++|...|.|.||.....+... .+.+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 478889988765 59999999999998654332110 1123334
Q ss_pred eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--ec------cCCCeeEEEecC-----C--CCe
Q 014433 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VA------HQSEVNCLAFNP-----F--NEW 287 (424)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~------~~~~v~~v~~~~-----~--~~~ 287 (424)
+....++|++++.+.-| ++|.|..+|.+.|.|+|.+.. +..- .. ....++++.|.. + ..-
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPav---I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAV---IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEE---EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeE---EeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 44557899999998766 778999999999999998764 2221 11 234678888752 1 123
Q ss_pred EEEEEeCCCcEEEEECCC-C-C----CcceEecCCCCCEEEEE-EcCC-C-------------------CcEEEEEECCC
Q 014433 288 ILATGSTDKTVKLFDLRK-I-S----TALHTFDSHKEEVFQVG-WNPK-N-------------------ETILASCCLGR 340 (424)
Q Consensus 288 ~l~tg~~dg~i~iwd~~~-~-~----~~~~~~~~h~~~v~~~~-~sp~-~-------------------~~~l~s~~~dg 340 (424)
++++|...|.+.+|.+-- . + ........+.++|..+. ++.+ + +.++++++ +.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~ 235 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES 235 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence 788999999999998752 1 1 11112224556666555 3221 1 12444444 55
Q ss_pred eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC----CCCCcEEEEEeCCCcEEEEecCC
Q 014433 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN----PCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
.++++...+.+. ....+ ........+.+- ..+...|++-..+|.++++.+-.
T Consensus 236 ~irv~~~~~~k~-------------~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 236 DIRVFKPPKSKG-------------AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEE-TT---E-------------EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred ceEEEeCCCCcc-------------cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 699998876432 11111 111112223332 12233678888999999999865
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.70 E-value=0.018 Score=52.45 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=90.5
Q ss_pred CceEEEEeC----------CCcEEEEeCCCC-CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433 191 EGHLLSGSD----------DAQICLWDINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 191 ~~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
..+|++|.. .|.|.++++... .....++.+.... ..++|++++-- +..++++ ..+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF--NGRLVVA--VGNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE--TTEEEEE--ETTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh--CCEEEEe--ecCEEEEEEccC
Confidence 346776643 289999999874 2122333333333 47889998866 3345433 458999999998
Q ss_pred CCCCCCeeeeecc--CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--cCCCCCEEEEEEcCCCCcEEEE
Q 014433 260 PSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 260 ~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~l~s 335 (424)
.+. +.....+ ...+.++... +. +++.|.....+.++..+.....+..+ ......++++.|-+++. .+++
T Consensus 117 ~~~---l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 117 SKT---LLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp TSS---EEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE
T ss_pred ccc---chhhheecceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE
Confidence 662 2222222 3356666655 44 68889888888888655422322222 22355789999987775 7889
Q ss_pred EECCCeEEEeeCCC
Q 014433 336 CCLGRRLMVWDLSR 349 (424)
Q Consensus 336 ~~~dg~i~iwd~~~ 349 (424)
+..+|.+.++....
T Consensus 190 ~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 190 GDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTSEEEEEEE-S
T ss_pred EcCCCeEEEEEECC
Confidence 99999999998864
No 344
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.65 E-value=0.018 Score=49.87 Aligned_cols=184 Identities=13% Similarity=0.050 Sum_probs=99.4
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 219 (424)
.+.+++.++.++.||..+ .+....... ...+...... .+. .++.++.++.|..+|..+++.......
T Consensus 38 ~v~~~~~~~~l~~~d~~t----------G~~~W~~~~-~~~~~~~~~~-~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKT----------GKVLWRFDL-PGPISGAPVV-DGG-RVYVGTSDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp EEEEEETTSEEEEEETTT----------SEEEEEEEC-SSCGGSGEEE-ETT-EEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCC----------CCEEEEeec-cccccceeee-ccc-ccccccceeeeEecccCCcceeeeecc
Confidence 455567899999999876 333444443 2222111111 233 577777888999999888754322100
Q ss_pred eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC----------e-eEEEecCCCCeE
Q 014433 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE----------V-NCLAFNPFNEWI 288 (424)
Q Consensus 220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------v-~~v~~~~~~~~~ 288 (424)
....... ..........+..+ +++..++.|..+|+++++. +-........ + ..+.+. ++ .
T Consensus 105 -~~~~~~~-~~~~~~~~~~~~~~-~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~- 175 (238)
T PF13360_consen 105 -TSSPPAG-VRSSSSPAVDGDRL-YVGTSSGKLVALDPKTGKL---LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-R- 175 (238)
T ss_dssp --SSCTCS-TB--SEEEEETTEE-EEEETCSEEEEEETTTTEE---EEEEESSTT-SS--EEEETTEEEEEECC-TT-E-
T ss_pred -ccccccc-cccccCceEecCEE-EEEeccCcEEEEecCCCcE---EEEeecCCCCCCcceeeecccccceEEE-CC-E-
Confidence 0000011 11112222224444 4677799999999998874 3333222211 1 233333 23 3
Q ss_pred EEEEeCCCc-EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 289 LATGSTDKT-VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 289 l~tg~~dg~-i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+..++.++. +.+ |+.+ ++.+.... ...+..+ ....+. .|+.++.++.|..||+++++
T Consensus 176 v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTE
T ss_pred EEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCC
Confidence 555666675 555 9998 44333222 2233332 345554 56666699999999999863
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.65 E-value=0.037 Score=52.34 Aligned_cols=224 Identities=12% Similarity=0.176 Sum_probs=111.9
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
...-.+..+.++|+++ ++++ +.+|.-.|+.... ... . ..+.....+|.+.+ .+|+-...+.
T Consensus 30 ~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~----------~r~--k---~~G~g~~~vw~~~n--~yAv~~~~~~ 90 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALA----------WRN--K---AFGSGLSFVWSSRN--RYAVLESSST 90 (443)
T ss_dssp E-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTT----------TEE--E---EEEE-SEEEE-TSS--EEEEE-TTS-
T ss_pred CCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccC----------Ccc--c---ccCceeEEEEecCc--cEEEEECCCe
Confidence 3455688999999887 5555 5578888888433 111 1 12445678899833 4888887899
Q ss_pred EEEE-eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 203 ICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 203 i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
|.++ +++.. ....+. ....+..|-. |. +|+..+ ++.|.+||..+++. +..+.. .+|..|.|
T Consensus 91 I~I~kn~~~~-~~k~i~-------~~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~---i~~i~v--~~vk~V~W 152 (443)
T PF04053_consen 91 IKIYKNFKNE-VVKSIK-------LPFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKL---IRRIDV--SAVKYVIW 152 (443)
T ss_dssp EEEEETTEE--TT------------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--E---EEEESS---E-EEEEE
T ss_pred EEEEEcCccc-cceEEc-------CCcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcce---eeEEec--CCCcEEEE
Confidence 9996 44322 111211 1123444432 55 443444 45899999998764 555442 24899999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCC--------C--CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 282 NPFNEWILATGSTDKTVKLFDLRKI--------S--TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~~~~--------~--~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
++++. ++|..+ +..+.|++.... + ..+..+..-...|.+.+|..+ -++.|.. . .++- +..+.
T Consensus 153 s~~g~-~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge 224 (443)
T PF04053_consen 153 SDDGE-LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGE 224 (443)
T ss_dssp -TTSS-EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTE
T ss_pred ECCCC-EEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCC
Confidence 99998 466655 446788775531 0 023333322568899999865 3444433 3 5665 22221
Q ss_pred cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...+..+ ..++.=+.+.+... .+.....|+.+..+.+...
T Consensus 225 ------------~~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 225 ------------TGIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ------------EEEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred ------------cceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence 1222222 33566667777555 5777788888888877654
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.59 E-value=0.004 Score=59.95 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=98.0
Q ss_pred ecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe----------------------
Q 014433 236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS---------------------- 293 (424)
Q Consensus 236 ~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~---------------------- 293 (424)
.|++..+..+.-..+.+.+.|..+.+. ..++.- .....-++++|++.++++++.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV---~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEV---AWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceE---EEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 445544433433456677777776442 222221 223455677777775444431
Q ss_pred -----------------CCCcEEEEECCC----CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 294 -----------------TDKTVKLFDLRK----ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 294 -----------------~dg~i~iwd~~~----~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
.++.|.+.|.++ ....+..+. -......+.++|+|+++++++..+.+|.|.|+.+...
T Consensus 277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 124577788775 223333333 3556788999999998888888899999999988653
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...-. -+....+.....- ...-...+|.++|. ...|---|..|..|++...
T Consensus 356 ~~~~~--~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 356 LFDGK--IKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred hhhcc--CCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHHH
Confidence 21100 0000122222222 22346678999987 7888889999999999873
No 347
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.59 E-value=0.029 Score=52.83 Aligned_cols=182 Identities=13% Similarity=0.002 Sum_probs=95.2
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEec--CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHL--RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~ 269 (424)
.++.++.+|.+..+|..+++.............+. .....+.-+| .+..++ .++.+|.+..+|+.+++. +-..
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy-~~~~~g~l~ald~~tG~~---~W~~ 282 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY-ALAYNGNLVALDLRSGQI---VWKR 282 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE-EEEcCCeEEEEECCCCCE---EEee
Confidence 46677788999999988775433221100000000 0001111111 134454 566789999999998764 1111
Q ss_pred eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
. ......+.. .+. .++.++.+|.+..+|..+ ++.+-....-. ....+.... +. .|+.++.+|.+.+.|..
T Consensus 283 ~--~~~~~~~~~--~~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 283 E--YGSVNDFAV--DGG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINRE 353 (394)
T ss_pred c--CCCccCcEE--ECC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECC
Confidence 1 111112222 244 366677899999999987 44332222111 112222222 32 57788999999999988
Q ss_pred CCCcccCCCCcCCCCCeeeEEEcCCCCCcc-eEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKIS-DFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
++. .+....-....+. ...+ .++ .|+.++.||.|+.+++
T Consensus 354 tG~--------------~~~~~~~~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 354 DGR--------------FVAQQKVDSSGFLSEPVV-ADD--KLLIQARDGTVYAITR 393 (394)
T ss_pred CCC--------------EEEEEEcCCCcceeCCEE-ECC--EEEEEeCCceEEEEeC
Confidence 763 3333322212222 1122 133 3666688999988764
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00041 Score=65.20 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=73.5
Q ss_pred CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee-EEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN-CLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~tg~~dg~i~iwd~~~ 305 (424)
...+.-+.|+|.-+ ++|.+..+|.|.++.+.-. .+-++..+...++ +++|.|+|. +||.|-.||+|++.|+.+
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~q----Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQ----RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEeccc----eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccC
Confidence 45678899999875 8899999999999988733 3556665677777 999999988 899999999999999998
Q ss_pred CCCcceEecCCCCCEEEEEEcC
Q 014433 306 ISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 306 ~~~~~~~~~~h~~~v~~~~~sp 327 (424)
+.........-...|.++-|++
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 4433322223356788888874
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0032 Score=58.24 Aligned_cols=142 Identities=17% Similarity=0.248 Sum_probs=94.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC-------cEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-------YLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
|.++.....++-.|++.++. +..+..+.. |+-+.+.|+.. .-| .|-.|..|.-||.|-... ..+
T Consensus 349 l~~~~~~~~l~klDIE~GKI------VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~-~kl 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKI------VEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGK-NKL 419 (644)
T ss_pred eeCCCCcCcceeeeccccee------eeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCc-cee
Confidence 44556666777888887744 344444444 66666666532 123 466788899999996442 122
Q ss_pred eeeecc----CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433 267 QSVVAH----QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 267 ~~~~~~----~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
...+.| .....|++-..+| .+|+|+.+|.|++||- ...+....+.+-..+|..+..+.+|.++|+|| +..+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyL 494 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYL 494 (644)
T ss_pred eeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEE
Confidence 222222 3456677766655 5999999999999997 43556667788889999999999998766665 5567
Q ss_pred EEeeCCC
Q 014433 343 MVWDLSR 349 (424)
Q Consensus 343 ~iwd~~~ 349 (424)
.+-++.-
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 7666643
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00044 Score=64.97 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=74.5
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCcee-EEEecCCCCceEEEEeCCC
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY-GLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg 201 (424)
.-+-.|..+.|+|.-. +||++..+|.|.+..++- ..+.++.-|...++ +++|.|+|+ +||.|-.||
T Consensus 18 ~l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG 84 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMD-LIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDG 84 (665)
T ss_pred ccccceEEEEEcCccc-hhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCC-EEEEEecCC
Confidence 3445677899999765 999999999999999874 55667776777777 999999988 899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL 237 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 237 (424)
+|++.|+.++...... .......|.++-|.+
T Consensus 85 ~I~L~Dve~~~~l~~~-----~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSF-----LFSVETDISKGIWDR 115 (665)
T ss_pred eEEEEEccCCCceecc-----ccccccchheeeccc
Confidence 9999999887543221 112345677777763
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0041 Score=57.60 Aligned_cols=146 Identities=13% Similarity=0.160 Sum_probs=97.4
Q ss_pred cCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe------EEEEEeCCCcEEEEECCCCCC-c
Q 014433 237 LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW------ILATGSTDKTVKLFDLRKIST-A 309 (424)
Q Consensus 237 ~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~------~l~tg~~dg~i~iwd~~~~~~-~ 309 (424)
.+...++.++.....++-.|+..++. +....-+.. |+-+.+.|+... --+.|-.+..|.-||.|-.+. .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKI---VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKI---VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cccceEeeCCCCcCcceeeeccccee---eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 34445566667777788899999875 556655554 777777776431 123567788999999996444 2
Q ss_pred ceEecCCC----CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 310 LHTFDSHK----EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 310 ~~~~~~h~----~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
+...+.|. ..-.|.+-..+| ++|+||.+|.|++||- .+. +....+.+-..+|..+..+.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~-------------~AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR-------------RAKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhh-------------hhhhcccccCCceeeEEeecc
Confidence 33333332 234555555555 6999999999999997 332 222334566778999999999
Q ss_pred CCcEEEEEeCCCcEEEEec
Q 014433 386 EDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 386 ~~~~l~s~~~dg~i~vw~~ 404 (424)
|+++|+|+ +..+.+-++
T Consensus 483 GKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 483 GKWILATC--KTYLLLIDT 499 (644)
T ss_pred CcEEEEec--ccEEEEEEE
Confidence 99877664 455655554
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.49 E-value=0.0085 Score=43.91 Aligned_cols=102 Identities=10% Similarity=-0.028 Sum_probs=66.2
Q ss_pred eeEEEecC---CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433 128 VNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 128 v~~~~~~p---~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
|++++++. ++.+-|++|+.|..|+||+-.. .+..+. -...|++|+-... ..|+.+..+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~~--~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLGG--GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcCC--CEEEEEecCCEEE
Confidence 56666655 5667899999999999999665 123333 4556778876654 3699999999999
Q ss_pred EEeCCCCCCCCcccceeeeecCCccEeeEEEec---CCCcEEEEEeCCCeEE
Q 014433 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLL 253 (424)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~s~~~dg~i~ 253 (424)
+|+-... ... .+ .+..+.++++.. ++..-|++|-.+|.|-
T Consensus 67 vY~~~~R--lWR------iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQR--LWR------IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcce--eee------ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9976322 111 11 123466665543 3334456888888764
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.00096 Score=63.58 Aligned_cols=113 Identities=14% Similarity=0.211 Sum_probs=83.3
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
+++..++ +++.|+.-|.+++|+-...........+..+.+..+..+++. .++|+|+..|.|.++-+....
T Consensus 40 c~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~-------- 109 (726)
T KOG3621|consen 40 CVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKEL-------- 109 (726)
T ss_pred EeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccC--------
Confidence 3444466 699999999999998765333333443444566677778877 589999999999999987732
Q ss_pred CCCCCeeeEE---EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 360 EDGPPELLFI---HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 360 ~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
|+...+. ...|...|++++|++++. -+++|..-|.|..-.+..
T Consensus 110 ---p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 ---PRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ---CCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEech
Confidence 1222222 223678899999999999 699999999999988887
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.076 Score=47.60 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=125.5
Q ss_pred EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014433 131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA 210 (424)
Q Consensus 131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 210 (424)
-.|.+....++.+--..+.|.-|+..+ .....+ .+.+.+.++.....+. .|+++.. -+.+++++.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~-----------g~~~~~-~~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~ 94 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPET-----------GKKRVF-PSPGGFSSGALIDAGG-RLIACEH--GVRLLDPDT 94 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCc-----------CceEEE-ECCCCcccceeecCCC-eEEEEcc--ccEEEeccC
Confidence 356676665677766778888888764 111222 2334444554444343 4555543 355666644
Q ss_pred CCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEe-----C-----CCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433 211 APKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVG-----D-----DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 211 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~-----~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v 279 (424)
+.....+ .....+ .....+++...|+|...|-+-+ . -|.|+.+|. .+.. +.....+-..-+.|
T Consensus 95 ~~~~t~~--~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~---~~l~~~~~~~~NGl 168 (307)
T COG3386 95 GGKITLL--AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV---VRLLDDDLTIPNGL 168 (307)
T ss_pred CceeEEe--ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE---EEeecCcEEecCce
Confidence 3221111 011111 1246678888999875443222 0 133444443 2221 33333344566889
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCC-CC----C-cceEecCCCCCEEEEEEcCCCCcEEEEEECCC-eEEEeeCCCCCc
Q 014433 280 AFNPFNEWILATGSTDKTVKLFDLRK-IS----T-ALHTFDSHKEEVFQVGWNPKNETILASCCLGR-RLMVWDLSRIDE 352 (424)
Q Consensus 280 ~~~~~~~~~l~tg~~dg~i~iwd~~~-~~----~-~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg-~i~iwd~~~~~~ 352 (424)
+|+|+++.++++=+..+.|.-|++.. .. + ....+....+..-.++...+|. +.+++..+| .|.+|+.. +
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G-- 244 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-G-- 244 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-C--
Confidence 99999997666666678898888762 11 1 1122223445666777777774 443444443 89999887 3
Q ss_pred ccCCCCcCCCCCeeeEEEcCCCCCcceEEeC-CCCCcEEEEEeCC
Q 014433 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWN-PCEDWVISSVAED 396 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d 396 (424)
+++....-....+++++|- |+.+.|++|+...
T Consensus 245 ------------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 ------------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ------------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 4455555554567788885 4455567776655
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.41 E-value=0.038 Score=51.14 Aligned_cols=231 Identities=12% Similarity=0.108 Sum_probs=117.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce---eee
Q 014433 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM---QIF 223 (424)
Q Consensus 147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~ 223 (424)
.+.+.|||+.+ .....+......+....|+|+|. .++-.. ++.|.++++.++.. ..+..- ..+
T Consensus 22 ~~~y~i~d~~~-----------~~~~~l~~~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~ 87 (353)
T PF00930_consen 22 KGDYYIYDIET-----------GEITPLTPPPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEETTT-----------TEEEESS-EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEE-EESES--TTTEE
T ss_pred ceeEEEEecCC-----------CceEECcCCccccccceeecCCC-eeEEEe-cCceEEEECCCCCe-EEeccccceeEE
Confidence 46799999987 11222222256788999999987 455554 57899998765521 111000 000
Q ss_pred ecC---------CccEeeEEEecCCCcEEEEEeCCCeEE-----------------------------------EEEcCC
Q 014433 224 KVH---------EGVVEDVAWHLRHEYLFGSVGDDQYLL-----------------------------------IWDLRT 259 (424)
Q Consensus 224 ~~~---------~~~v~~~~~~~~~~~~~~s~~~dg~i~-----------------------------------i~d~~~ 259 (424)
.+- -+.-..+.|+|++++++..--++..|. |+|+.+
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~ 167 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS 167 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS
T ss_pred cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC
Confidence 000 112356889999987654433333333 344443
Q ss_pred CCCCCCeeee---eccCCCeeEEEecCCCCeEEE-EEeCCC---cEEEEECCCCCCcceEecCCCCCE---EEEEEc-CC
Q 014433 260 PSVSKPVQSV---VAHQSEVNCLAFNPFNEWILA-TGSTDK---TVKLFDLRKISTALHTFDSHKEEV---FQVGWN-PK 328 (424)
Q Consensus 260 ~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~-tg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v---~~~~~s-p~ 328 (424)
++.. .+... ......+..+.|.+++..+++ ....+. .+.++|..+....+.........| ....|. ++
T Consensus 168 ~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 168 GKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp TCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred CcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence 3321 11111 122345778889888773333 333332 466777766322222222222222 355554 77
Q ss_pred CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce-EEeCCCCCcEEEEEeCCC--cEEEEecC
Q 014433 329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD-FSWNPCEDWVISSVAEDN--ILQIWQMA 405 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg--~i~vw~~~ 405 (424)
+..+|.....+|--+||-+.... .....+....-.|.. +.|++++..++.++..++ .-.||.+.
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~-------------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDG-------------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTS-------------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred CCEEEEEEEcCCCcEEEEEcccc-------------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 77777777788876666554422 112233333344544 678888886666766533 44455443
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.41 E-value=0.054 Score=49.36 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=75.4
Q ss_pred ccEeeEEEecCCCcEEEEEeC---CC-eEEEEEcCCCCCCCCeeeeecc--CCCeeEEEecCCCCeEEEEEe----CCCc
Q 014433 228 GVVEDVAWHLRHEYLFGSVGD---DQ-YLLIWDLRTPSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGS----TDKT 297 (424)
Q Consensus 228 ~~v~~~~~~~~~~~~~~s~~~---dg-~i~i~d~~~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~tg~----~dg~ 297 (424)
..+..+.|+|..+.+++-|-. +. .-+||-+++... ....+..+ ...+..=-|.|+|..+...+. .+..
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 456678899998888866543 22 136676654332 11222222 223344468999987665443 2335
Q ss_pred EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC----------------eEEEeeCCCCCcccCCCCcCC
Q 014433 298 VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR----------------RLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 298 i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~~~~ 361 (424)
|.-+|+.+... ..... ......+--++++. +++.=+.|. -|.++++.....
T Consensus 266 i~~~d~~t~~~-~~~~~--~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~--------- 332 (386)
T PF14583_consen 266 IAGYDPDTGER-RRLME--MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF--------- 332 (386)
T ss_dssp EEEE-TTT--E-EEEEE--E-SEEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTEE---------
T ss_pred EEeeCCCCCCc-eEEEe--CCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCce---------
Confidence 77777776322 22122 12344566678885 554433332 344556554321
Q ss_pred CCCeeeEE-------EcCCCC-CcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433 362 GPPELLFI-------HGGHTS-KISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 362 ~~~~~~~~-------~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~vw~~ 404 (424)
..+.. ..++.. .=-...|+||++++|.++...|...||-+
T Consensus 333 ---~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 333 ---RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ---eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 11111 122221 11357899999999999999998888754
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.41 E-value=0.014 Score=42.87 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=66.8
Q ss_pred EeeEEEe---cCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433 230 VEDVAWH---LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI 306 (424)
Q Consensus 230 v~~~~~~---~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~ 306 (424)
|+++++. .++.+-|++|+.|..|++|+-.. .+..+. -...|++++-...+ .|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc-
Confidence 4555554 34556677999999999998653 244443 35678888776654 489999999999997543
Q ss_pred CCcceEecCCCCCEEEEEEcC---CCCcEEEEEECCCeEE
Q 014433 307 STALHTFDSHKEEVFQVGWNP---KNETILASCCLGRRLM 343 (424)
Q Consensus 307 ~~~~~~~~~h~~~v~~~~~sp---~~~~~l~s~~~dg~i~ 343 (424)
.+-..+. +..++++++.. +|..-|++|-.+|.|-
T Consensus 73 --RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 --RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2333333 34466666543 3333588888888764
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.37 E-value=0.00063 Score=39.10 Aligned_cols=38 Identities=26% Similarity=0.615 Sum_probs=32.1
Q ss_pred eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433 365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 365 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~ 403 (424)
.....+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 34555667888999999999887 789999999999996
No 359
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.37 E-value=0.029 Score=55.10 Aligned_cols=237 Identities=11% Similarity=0.091 Sum_probs=119.9
Q ss_pred CcEEEEEeCC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC------CcEEE
Q 014433 138 PFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD------AQICL 205 (424)
Q Consensus 138 ~~~latg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~i 205 (424)
..+++.|+.. ..+..||..+ ..+.....+. +...-.+++... + .+.++|+.| .++..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~--------~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~ 353 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKT--------NEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVER 353 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCc--------CcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEE
Confidence 3477777766 3677788776 2233333333 222234455443 3 378888888 34667
Q ss_pred EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe-----EEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-----LLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~v~ 280 (424)
||....+ +..+..+....... ....-+..++|+||.||. +-.||.++.+ ...+..+.. .....+
T Consensus 354 YD~~~~~----W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m~~---~r~~~g 422 (571)
T KOG4441|consen 354 YDPRTNQ----WTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPMLT---RRSGHG 422 (571)
T ss_pred ecCCCCc----eeccCCccCccccc---eeEEECCEEEEEeccccccccccEEEecCCCCc-ccccCCCCc---ceeeeE
Confidence 8877653 22222222222111 122224568899998865 6678887765 222222221 222222
Q ss_pred ecCCCCeEEEEEeCCC------cEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe-----EEEeeCC
Q 014433 281 FNPFNEWILATGSTDK------TVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-----LMVWDLS 348 (424)
Q Consensus 281 ~~~~~~~~l~tg~~dg------~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~-----i~iwd~~ 348 (424)
...-+..+.++|+.++ ++..||..+.. ..+..+........ ++.- ++ .+++.|+.|+. |..||..
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCC
Confidence 2222445888888654 56778876521 12222222122222 2222 23 57888887763 5667665
Q ss_pred CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC-----cEEEEecCCccCCCCCC
Q 014433 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN-----ILQIWQMAENIYHDEDD 414 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vw~~~~~~~~~~~~ 414 (424)
+..- ..+.........+-.+.+ ++. +.+.|+.|| +|..||..++.+....+
T Consensus 500 ~~~W------------~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 500 TNQW------------TMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred CCce------------eEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 5321 112111112222222222 233 778888776 47788888887765554
No 360
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.0006 Score=56.22 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=85.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEE
Q 014433 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF 321 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~ 321 (424)
++...+.||.|+-++++..+.. ...-.-+...-.-+.+ +. -+++|+.+|.|++|.....+.....+..-...|.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID 105 (238)
T ss_pred hhccccCCcccccchhhhhhhh--hhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccce
Confidence 3446678899988888764421 1111112222111222 23 4889999999999988743333333333233443
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEE--eCCCc
Q 014433 322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSV--AEDNI 398 (424)
Q Consensus 322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~--~~dg~ 398 (424)
++.-.-+...+..+++.||.|+.|++... ..+.....|. ..+..+.....++ +++.+ |.|..
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--------------k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPN--------------KVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRV 170 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccC--------------ceeeeeccccCCCcceeEEecCCc-eEEeeccccchh
Confidence 33333233348889999999999998754 3344444555 4555555555566 56666 77888
Q ss_pred EEEEecCCc
Q 014433 399 LQIWQMAEN 407 (424)
Q Consensus 399 i~vw~~~~~ 407 (424)
++.|++..-
T Consensus 171 ~k~W~ve~~ 179 (238)
T KOG2444|consen 171 LKKWNVEKI 179 (238)
T ss_pred hhhcchhhh
Confidence 888887654
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.28 E-value=0.00067 Score=38.99 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=31.9
Q ss_pred CcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 207 (424)
+...+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 3456778889999999999775 799999999999996
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.054 Score=46.54 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=72.3
Q ss_pred ccEeeEEEecCCCcEEEEEeCCCe-EEEEEcCCCCCCCCeeeeeccCC--CeeEEEecCCCCeEEEEEeC----CCcEEE
Q 014433 228 GVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGST----DKTVKL 300 (424)
Q Consensus 228 ~~v~~~~~~~~~~~~~~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~tg~~----dg~i~i 300 (424)
.....|+++|..+.-++.+-.-|+ ..++|...... ...+...+. .--.=.|+|+|.++.||-.. -|.|-|
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~---pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQE---PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcC---cEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE
Confidence 344578888888777777766666 56889887664 222211111 11123689999965555322 378999
Q ss_pred EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s 335 (424)
||.+..-+.+..+..|.-....+.|.++|+.++++
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 99998777888899999889999999999854444
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.23 E-value=0.033 Score=47.09 Aligned_cols=128 Identities=11% Similarity=-0.060 Sum_probs=79.7
Q ss_pred ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC
Q 014433 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP 265 (424)
Q Consensus 186 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~ 265 (424)
..++.+.+++.|+..+.+.--|..+++...... -...+.+-+.- -++ .++.|+..|.+++.+.+++..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-------lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~--- 85 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-------LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQ--- 85 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-------hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhh---
Confidence 334455578889999999888888775322111 12333333322 244 466899999999999999864
Q ss_pred eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp 327 (424)
+..+.....--......+++. ++..|+.|++.+..|.++ ..++...+...+.-.+-+..|
T Consensus 86 ~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 86 IWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred eeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecccCCceeccceecC
Confidence 333322222112233456676 899999999999999998 566666554333333344445
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.19 E-value=0.0016 Score=39.83 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=31.4
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCC
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK 157 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~ 157 (424)
+........|.+++|+|... +||.|+.+|.|.||.++-
T Consensus 5 ~~~k~l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 5 LGEKNLPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNW 42 (47)
T ss_pred ecccCCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence 33444566799999999886 999999999999999853
No 365
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.16 E-value=0.22 Score=46.83 Aligned_cols=227 Identities=7% Similarity=-0.014 Sum_probs=116.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeE-EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 218 (424)
.+..++.+|.++.+|..+ .+...+..... .+.+ .... +. .++.+..+|.+..+|.++++......
T Consensus 122 ~v~v~~~~g~l~ald~~t----------G~~~W~~~~~~-~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 122 KVYIGSEKGQVYALNAED----------GEVAWQTKVAG-EALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred EEEEEcCCCEEEEEECCC----------CCCcccccCCC-ceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeec
Confidence 455677889999999876 22233222211 1111 1111 23 57778888999999998886543332
Q ss_pred cee---eeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-CC---CeeEEEecC--CCCeEE
Q 014433 219 AMQ---IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QS---EVNCLAFNP--FNEWIL 289 (424)
Q Consensus 219 ~~~---~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~---~v~~v~~~~--~~~~~l 289 (424)
... ...+...++ .. +..+ +.++.+|.+..+|..+++........... .. ....+..+| .+. .+
T Consensus 188 ~~~~~~~~~~~~sP~----v~--~~~v-~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~v 259 (394)
T PRK11138 188 LDVPSLTLRGESAPA----TA--FGGA-IVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VV 259 (394)
T ss_pred CCCCcccccCCCCCE----EE--CCEE-EEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EE
Confidence 100 000111111 11 2234 46678899999999887642211110000 00 001111112 134 35
Q ss_pred EEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE
Q 014433 290 ATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI 369 (424)
Q Consensus 290 ~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 369 (424)
+.++.+|.+..+|..+ ++.+-.... .....+.. .+. .++.++.+|.+..+|..++...-...
T Consensus 260 y~~~~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~------------ 321 (394)
T PRK11138 260 YALAYNGNLVALDLRS-GQIVWKREY--GSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQS------------ 321 (394)
T ss_pred EEEEcCCeEEEEECCC-CCEEEeecC--CCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEccc------------
Confidence 5667789999999988 444433321 11112222 233 46677789999999998764211000
Q ss_pred EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 370 HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 370 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
...+ ....+.... +. .|+.++.+|.|.+.|..++.+.
T Consensus 322 ~~~~-~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 322 DLLH-RLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred ccCC-CcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEE
Confidence 0000 011111221 33 4666788899999888887653
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.14 E-value=0.18 Score=47.54 Aligned_cols=172 Identities=10% Similarity=0.107 Sum_probs=83.9
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC---CCCCeeeeeccCCCeeE
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS---VSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~v~~ 278 (424)
.|.+|+.... .+..+.-..+.+.++.|+.+. .|+ +...||.+++||+.... ....+....-....+..
T Consensus 62 ~I~iys~sG~-------ll~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~ 132 (410)
T PF04841_consen 62 SIQIYSSSGK-------LLSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFA 132 (410)
T ss_pred EEEEECCCCC-------EeEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccc
Confidence 4888887543 222222223789999998865 354 66799999999996432 00011111111222333
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---C-----CCC-CEEE-EEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---S-----HKE-EVFQ-VGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~-----h~~-~v~~-~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
..+...| ..+.+ .++.+.+..--........+. . +.. .... ..++.+.. +.+....++.+.+.+-.
T Consensus 133 ~~~~~~G-ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 133 IWFYKNG-IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDEN 208 (410)
T ss_pred cccCCCC-EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcc
Confidence 3333334 12333 344444432211010111110 0 000 1111 22333332 33444445555533322
Q ss_pred CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
... .. ...+++..++.||+++ .+|.-..+|.+.|..-.
T Consensus 209 ~~~-----------------~i-~~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 209 SFK-----------------QI-DSDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSD 246 (410)
T ss_pred ccc-----------------cc-cCCCCeEEEEECCCCC-EEEEEECCCCEEEEECc
Confidence 110 01 1235799999999999 68888888988887644
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.17 Score=45.40 Aligned_cols=202 Identities=11% Similarity=0.058 Sum_probs=112.8
Q ss_pred EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 183 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
+-.|.+....++.+--..+.|.-|+..++.. ..+. +.+.+.++..-..+..++ ++ +..+.++++.++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-------RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-------EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCce
Confidence 4457776665666666788899998875522 2222 334445555444444444 33 23466677654442
Q ss_pred CCCeeeee--ccCCCeeEEEecCCCCeEEEEEe-----C-----CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433 263 SKPVQSVV--AHQSEVNCLAFNPFNEWILATGS-----T-----DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 263 ~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~-----~-----dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 330 (424)
...+.... ......+.+...|+|...+-+.+ . -|.|+.+|. . +..++.+..+-..-+.|+|||+++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence 11111111 11245677888999884333322 1 133444443 2 445555555555668899999998
Q ss_pred cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC-cEEEEecC
Q 014433 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN-ILQIWQMA 405 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-~i~vw~~~ 405 (424)
.++++=+..+.|.-|++....-. ..............+..-.++...+|. +.+++..+| .|.+|+..
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGP-------IGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCc-------cCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC
Confidence 77767677788888888631000 001122222333445566788888888 443444443 89999988
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.14 Score=44.37 Aligned_cols=178 Identities=15% Similarity=0.239 Sum_probs=105.0
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+-...|.++.|+|+.+.++++....-.|.=.+.+. .......+.+- ...-+|.|...+. +.++--.++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G---------dlirtiPL~g~-~DpE~Ieyig~n~-fvi~dER~~~ 151 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG---------DLIRTIPLTGF-SDPETIEYIGGNQ-FVIVDERDRA 151 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC---------ceEEEeccccc-CChhHeEEecCCE-EEEEehhcce
Confidence 34455999999999887888765544443333322 12212223332 2334677776554 4555556888
Q ss_pred EEEEeCCCCCCCCcccc----eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc------
Q 014433 203 ICLWDINAAPKNKSLEA----MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH------ 272 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 272 (424)
+.++.+........... +............++|.|.+..++ .+-.-.-+.||.+......-.......+
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 88888876533222111 111222255688999999988776 5556666777766543311111111111
Q ss_pred -CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec
Q 014433 273 -QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314 (424)
Q Consensus 273 -~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 314 (424)
-..|.++.|++...++|+-+..++.+.-.|... .++..+.
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G--~~~~~ls 271 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG--EVIELLS 271 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCC--CeeeeEE
Confidence 235778889988888898888888888888774 4444443
No 369
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.019 Score=52.48 Aligned_cols=160 Identities=15% Similarity=0.201 Sum_probs=105.4
Q ss_pred cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--
Q 014433 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-- 306 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-- 306 (424)
.-+.+-|...++.+|++ ..|.+.-|-++......++..-....++|.+|.|+++++ +||+--.+.+|.+++....
T Consensus 24 esngvFfDDaNkqlfav--rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAV--RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred cccceeeccCcceEEEE--ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCch
Confidence 34556666666666655 345666676665544344444445677999999999998 7999999999999998431
Q ss_pred -CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433 307 -STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 307 -~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
.....+.+..+..|....|+...+ +|..+..| +-+|-..... +.++....|...|+-..|+++
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pek-------------rslRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEK-------------RSLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhh-------------hhhhhhhhcccCccEEEEccc
Confidence 122333344456799999998754 66666555 7777765432 234444567778999999998
Q ss_pred CCcEEEEEe-CCCcEEEEecCCc
Q 014433 386 EDWVISSVA-EDNILQIWQMAEN 407 (424)
Q Consensus 386 ~~~~l~s~~-~dg~i~vw~~~~~ 407 (424)
.+..+.+.+ ..+++.=+.++++
T Consensus 165 t~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 165 TAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred cceEeeeccccccccccEEEeec
Confidence 885555555 5555555555554
No 370
>PHA02713 hypothetical protein; Provisional
Probab=97.02 E-value=0.066 Score=52.73 Aligned_cols=149 Identities=11% Similarity=0.139 Sum_probs=72.5
Q ss_pred CcEEEEEeCCC-----eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC------------------
Q 014433 240 EYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK------------------ 296 (424)
Q Consensus 240 ~~~~~s~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg------------------ 296 (424)
..+++.||.++ .+..||..+.. ...+..+.........+.. +..+.+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence 45778888754 47889988754 1222221111111222233 334778887653
Q ss_pred -----cEEEEECCCC-CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC------eEEEeeCCC-CCcccCCCCcCCCC
Q 014433 297 -----TVKLFDLRKI-STALHTFDSHKEEVFQVGWNPKNETILASCCLGR------RLMVWDLSR-IDEEQTPEDAEDGP 363 (424)
Q Consensus 297 -----~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg------~i~iwd~~~-~~~~~~~~~~~~~~ 363 (424)
.+..||..+. ...+..+.........+++ ++ .+.+.|+.++ .+..||..+ ..-
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W----------- 493 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGW----------- 493 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCe-----------
Confidence 4677887652 1112222111111111222 24 4666776542 356677665 221
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC--cEEEEecCCccCC
Q 014433 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN--ILQIWQMAENIYH 410 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~~~~ 410 (424)
..+..+.........+.+ +++ +.+.||.++ .+..||+.++.+.
T Consensus 494 -~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 494 -ELITTTESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred -eEccccCcccccceeEEE--CCE-EEEEeeecceeehhhcCccccccc
Confidence 111112111222222233 345 888999888 6778888877654
No 371
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.052 Score=53.41 Aligned_cols=93 Identities=9% Similarity=0.073 Sum_probs=48.5
Q ss_pred eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC------cEEEEECCC--CCCcceEecCCCCCEEE
Q 014433 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK------TVKLFDLRK--ISTALHTFDSHKEEVFQ 322 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg------~i~iwd~~~--~~~~~~~~~~h~~~v~~ 322 (424)
.+..||.++.. ...+..+.........+.+. + .+.+.|+.++ .+..||..+ ....+..+.........
T Consensus 433 ~ve~YDP~td~-W~~v~~m~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 433 KVIRYDTVNNI-WETLPNFWTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred eEEEECCCCCe-EeecCCCCcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 47778887754 22222221111111222222 4 4777787642 467898875 23334444433333333
Q ss_pred EEEcCCCCcEEEEEECCC--eEEEeeCCCC
Q 014433 323 VGWNPKNETILASCCLGR--RLMVWDLSRI 350 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg--~i~iwd~~~~ 350 (424)
+.+ ++ .+.++|+.+| .+..||..+.
T Consensus 509 ~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 509 ILH--DN-TIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEE--CC-EEEEEeeecceeehhhcCcccc
Confidence 333 23 5888999888 5666766653
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.94 E-value=0.12 Score=43.88 Aligned_cols=111 Identities=6% Similarity=0.050 Sum_probs=76.1
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe
Q 014433 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313 (424)
Q Consensus 234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 313 (424)
...++.+.+++.|+..+.+.-.|..+++.. ... .-...+.+-+.- -|. +++.|...|.+++.+..+ +.....+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~--We~--ilg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~t-Gs~~w~f 89 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLI--WEA--ILGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKT-GSQIWNF 89 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEE--eeh--hhCceeeeeeEE-ECC-EEEEEEccCcEEEEEecc-hhheeee
Confidence 344566677888999999999999887741 111 123334333332 255 589999999999999998 5555555
Q ss_pred cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 314 ~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
.....--.+....+++. ++..++.|+..+..|.++..+
T Consensus 90 ~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 90 VILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred eehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce
Confidence 54332223445566774 899999999999999987543
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.92 E-value=0.21 Score=49.21 Aligned_cols=186 Identities=13% Similarity=0.073 Sum_probs=98.3
Q ss_pred CceeEEEecCCCCcEEEEEe-----CCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433 126 GEVNRARYMPQNPFLIATKT-----VSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~-----~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..+...+++|++..+.++.. .|+ .|.+++... .......+. ..+.-.|+|++. .|++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----------~~~~lt~g~--~~t~PsWspDG~-~lw~v~ 415 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----------VAVQVLEGH--SLTRPSWSLDAD-AVWVVV 415 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----------cceeeecCC--CCCCceECCCCC-ceEEEe
Confidence 35778899999986655542 233 555555432 111112222 377889999877 355543
Q ss_pred CC------------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE---EEcCCCCC-
Q 014433 199 DD------------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI---WDLRTPSV- 262 (424)
Q Consensus 199 ~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i---~d~~~~~~- 262 (424)
.. +.+.+.++..+.. .. .....|..+.|+|+|..+.+.. +|.|.+ -....+..
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~-------~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAV-------AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchh-------hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCcee
Confidence 22 2333333332211 00 2356799999999999776554 477777 33222220
Q ss_pred CCCeeeee-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECC
Q 014433 263 SKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 263 ~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
......+. .-...+.++.|.+++. ++ ++..++...+|-+.-.+.....+.. ...++..++=++. . ++....+
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~-iyv~~~~ 559 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--T-VYVTDAR 559 (591)
T ss_pred ecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--e-EEEEcCC
Confidence 11111222 2333468899999887 44 5555554445554432322222222 2456777777763 2 4445556
Q ss_pred Ce
Q 014433 340 RR 341 (424)
Q Consensus 340 g~ 341 (424)
|.
T Consensus 560 g~ 561 (591)
T PRK13616 560 AV 561 (591)
T ss_pred ce
Confidence 63
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.25 Score=42.70 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=121.5
Q ss_pred eccCCceeEEEecCCCCcEEEEEeCCCe-EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-
Q 014433 122 INHDGEVNRARYMPQNPFLIATKTVSAE-VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD- 199 (424)
Q Consensus 122 ~~h~~~v~~~~~~p~~~~~latg~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~- 199 (424)
+.-+.....|+|+|..+.-++.+-.-|+ ..++|.+........ .......+.+|. .|||+|. +|+..-+
T Consensus 64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~--~s~~~RHfyGHG------vfs~dG~-~LYATEnd 134 (366)
T COG3490 64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL--VSQEGRHFYGHG------VFSPDGR-LLYATEND 134 (366)
T ss_pred eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE--ecccCceeeccc------ccCCCCc-EEEeecCC
Confidence 3445555678999988777887777764 567888763221110 011123345553 6899998 5665433
Q ss_pred ----CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-----------------CCCeEEEEEcC
Q 014433 200 ----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLR 258 (424)
Q Consensus 200 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------------~dg~i~i~d~~ 258 (424)
-|.|-|||.+.+ +..+..+..|.-....+.|.++++.++++.+ ..-++.+.|..
T Consensus 135 fd~~rGViGvYd~r~~-----fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 135 FDPNRGVIGVYDAREG-----FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred CCCCCceEEEEecccc-----cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 378999999743 2344556678777889999999986654432 01123334433
Q ss_pred CCCCCCCeeeee--ccCCCeeEEEecCCCCeEEEEEeCCCc----EEEEECCCCCCcceEecCC-------CCCEEEEEE
Q 014433 259 TPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKT----VKLFDLRKISTALHTFDSH-------KEEVFQVGW 325 (424)
Q Consensus 259 ~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~~dg~----i~iwd~~~~~~~~~~~~~h-------~~~v~~~~~ 325 (424)
++....+ .++. .+.-.|..++..++|. +++.+-..|. --+.-....++++..+... ...|-+++.
T Consensus 210 tG~liek-h~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~ 287 (366)
T COG3490 210 TGNLIEK-HTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAA 287 (366)
T ss_pred ccchhhh-ccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheee
Confidence 4332111 1122 2344677788888776 3333222221 0011111123444444322 245778888
Q ss_pred cCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 326 NPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+.+...+.+|+=..+...+||..++.
T Consensus 288 n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 288 NRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred cccCCeEEEecCCCCeEEEEEcCCCc
Confidence 87766555566667778899999874
No 375
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.86 E-value=0.086 Score=50.05 Aligned_cols=125 Identities=12% Similarity=0.253 Sum_probs=75.9
Q ss_pred CCCceeEEEecCCC----CceEEEEeCCCcEEEEeCCCCCCCC-cccceeeee---cCCccEeeEEEecCCCcEEEEEeC
Q 014433 177 HSTEGYGLSWSKFK----EGHLLSGSDDAQICLWDINAAPKNK-SLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 177 h~~~v~~l~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~~~ 248 (424)
.=.-|.++.|.|-+ + .|++......|.||.+.-..... .+-..+... ...---..+.|+|... ++++-..
T Consensus 55 qFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~ 132 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTA 132 (671)
T ss_pred ccceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEec
Confidence 33458999999863 3 35556667899999987332211 110111111 0111224678999876 4445444
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~ 305 (424)
...-.+++++.... .+..-....+.|.|.+|.++|.+++++.+..=.-++||-..
T Consensus 133 ~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 44445677776553 22222245678999999999998777777666788998643
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.018 Score=58.09 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=69.2
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
.++.|+..|.+...|+...- .+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++. ++.+..|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~---l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKI---LKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcc---eeeeeec
Confidence 58889999999998886541 11122223467999999999987 556899999999999998664 5555555
Q ss_pred CCCeeEE---EecCCCCeEEEEEeCCCcEEEEEC
Q 014433 273 QSEVNCL---AFNPFNEWILATGSTDKTVKLFDL 303 (424)
Q Consensus 273 ~~~v~~v---~~~~~~~~~l~tg~~dg~i~iwd~ 303 (424)
..+.+.+ .+..++. .+.++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5554444 4555555 5778777776 5554
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.82 E-value=0.44 Score=44.55 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=27.5
Q ss_pred CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
...+.+++.+|.+. +.|+...-|+|.++|+..+.
T Consensus 307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh
Confidence 34578899999985 77777777999999998763
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.79 E-value=0.41 Score=47.25 Aligned_cols=192 Identities=13% Similarity=0.036 Sum_probs=98.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
.++..-.+++... + .+.++|+.+ .++..||... ..+.....+............ .|. +.++
T Consensus 320 ~~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~--------~~W~~~a~M~~~R~~~~v~~l--~g~-iYav 386 (571)
T KOG4441|consen 320 PSPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRT--------NQWTPVAPMNTKRSDFGVAVL--DGK-LYAV 386 (571)
T ss_pred CcccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCC--------CceeccCCccCccccceeEEE--CCE-EEEE
Confidence 3444455566665 3 588899988 3667777766 334443333332222211222 143 7788
Q ss_pred EeCCCc-----EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC------eEEEEEcCCCCCCCC
Q 014433 197 GSDDAQ-----ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ------YLLIWDLRTPSVSKP 265 (424)
Q Consensus 197 ~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg------~i~i~d~~~~~~~~~ 265 (424)
|+.||. |-.||..+.+- .....+. ..........-+..++++||.++ ++..||..+..- ..
T Consensus 387 GG~dg~~~l~svE~YDp~~~~W----~~va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-~~ 458 (571)
T KOG4441|consen 387 GGFDGEKSLNSVECYDPVTNKW----TPVAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-TL 458 (571)
T ss_pred eccccccccccEEEecCCCCcc----cccCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-ee
Confidence 888864 66677765432 1111111 12222222222456888888544 467888887652 22
Q ss_pred eeeeeccCCCeeEEEecCCCCeEEEEEeCCCc-----EEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKT-----VKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~-----i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
+..+..-........+ +..+.+.|+.|+. |..||.++.. ..+..+......+..+.+ +..+.+.|+.|
T Consensus 459 ~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~ 532 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFD 532 (571)
T ss_pred cCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEeccc
Confidence 2222222222222222 3358899998873 6778877521 122222222333322333 33578888877
Q ss_pred Ce
Q 014433 340 RR 341 (424)
Q Consensus 340 g~ 341 (424)
|.
T Consensus 533 ~~ 534 (571)
T KOG4441|consen 533 GN 534 (571)
T ss_pred Cc
Confidence 64
No 379
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.77 E-value=0.069 Score=50.67 Aligned_cols=155 Identities=14% Similarity=0.213 Sum_probs=94.3
Q ss_pred CceeEEEecCCCCceEEEEe--CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC----CCcEEEEEeCCCeE
Q 014433 179 TEGYGLSWSKFKEGHLLSGS--DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYL 252 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~s~~~dg~i 252 (424)
.++.+++|-. |+..+++.- .+|.+++=|-. .+ +.-..|..+.|.|- .+.++ +......|
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~---------vi----GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK---------VI----GQFEHVHGLSWAPPCTADTPALL-AVQHKKHV 84 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCcc---------Ee----eccceeeeeeecCcccCCCCceE-EEeccceE
Confidence 4688999975 766666643 23443332221 11 23346889999885 34566 56677899
Q ss_pred EEEEcCCC--CCCCCeeeeec-cCC----CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEE
Q 014433 253 LIWDLRTP--SVSKPVQSVVA-HQS----EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW 325 (424)
Q Consensus 253 ~i~d~~~~--~~~~~~~~~~~-~~~----~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~ 325 (424)
.||-+... +..+.+..... ... -...+.|||... +|++-.....-.+++++.....++.--...+.|.|.+|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW 163 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence 99998632 11122221111 111 123467999887 56665555555677777644444433345789999999
Q ss_pred cCCCCcEEEEEECCCeEEEeeCCC
Q 014433 326 NPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.++|..++++.+..=.-+|||-..
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCch
Confidence 999988777766655677888543
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.0082 Score=60.33 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=70.3
Q ss_pred EEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
.++.|+..|.+...|.+..-.+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+...+.. +.+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l-----------~~i 168 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKIL-----------KVI 168 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcce-----------eee
Confidence 5889999999999999863233333333467999999999995 7889999999999999875321 222
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
..+......|..+.+..++. .+.++...|. +|++.
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 22222223344555555666 6777776665 66654
No 381
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.73 E-value=0.23 Score=44.54 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=91.8
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccE-eeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
|.++.-|.+-+.||++.-..+....+.. .+....+..-..++ ..-++...+..++ -.+.+|.|+-.|+..... +..
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~-F~Sy~G~v~~~dlsg~~~-~~~ 220 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLY-FVSYEGNVYSADLSGDSA-KFG 220 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEE-EEBTTSEEEEEEETTSSE-EEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEE-EEecCCEEEEEeccCCcc-ccc
Confidence 4454468899999999999998554322 11112222222222 2334444443333 467889999988876542 112
Q ss_pred eeeec----------cCCCeeEEEecCCCCeEEEEEe--C-----CC--cEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433 267 QSVVA----------HQSEVNCLAFNPFNEWILATGS--T-----DK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 267 ~~~~~----------~~~~v~~v~~~~~~~~~l~tg~--~-----dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp 327 (424)
..+.. -.+.-.-+++++....+++.-. . |+ .|-++|+.+ ++.+..+.. ..++.+|+.+.
T Consensus 221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsq 298 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQ 298 (342)
T ss_dssp EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEES
T ss_pred CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEcc
Confidence 22111 1123445777775554444322 1 22 477778887 677777775 45788999999
Q ss_pred CCCcEEEEEE-CCCeEEEeeCCCCCc
Q 014433 328 KNETILASCC-LGRRLMVWDLSRIDE 352 (424)
Q Consensus 328 ~~~~~l~s~~-~dg~i~iwd~~~~~~ 352 (424)
+..-+|++.+ .++.+.+||..+++.
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--E
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 8776776554 578999999998743
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.70 E-value=0.31 Score=44.44 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=95.9
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceeEEEecCCCC
Q 014433 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
..+++.+.....+++|++++-.. + .++++ . .+.|.+|++... . ......+. ....+.++... +.
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~~~-~-~lv~~-~-g~~l~v~~l~~~--------~~l~~~~~~~-~~~~i~sl~~~--~~ 140 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICSFN-G-RLVVA-V-GNKLYVYDLDNS--------KTLLKKAFYD-SPFYITSLSVF--KN 140 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEET-T-EEEEE-E-TTEEEEEEEETT--------SSEEEEEEE--BSSSEEEEEEE--TT
T ss_pred ceEEEEEEEEeecCcceEhhhhC-C-EEEEe-e-cCEEEEEEccCc--------ccchhhheec-ceEEEEEEecc--cc
Confidence 34788888888999999999873 4 34443 3 479999999872 2 12222222 22356666654 44
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC---C-CC-Ce
Q 014433 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS---V-SK-PV 266 (424)
Q Consensus 192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~---~-~~-~~ 266 (424)
+++.|..-..+.++..+... ..+..+. -......++++.+-+++. .++++..+|.+.++...... . .. .+
T Consensus 141 -~I~vgD~~~sv~~~~~~~~~--~~l~~va-~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 141 -YILVGDAMKSVSLLRYDEEN--NKLILVA-RDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp -EEEEEESSSSEEEEEEETTT--E-EEEEE-EESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred -EEEEEEcccCEEEEEEEccC--CEEEEEE-ecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 79999988888888665421 1222222 122355688999986665 66689999999999876311 0 11 11
Q ss_pred eee--eccCCCeeEE---EecCC--CC-----eEEEEEeCCCcEEEE
Q 014433 267 QSV--VAHQSEVNCL---AFNPF--NE-----WILATGSTDKTVKLF 301 (424)
Q Consensus 267 ~~~--~~~~~~v~~v---~~~~~--~~-----~~l~tg~~dg~i~iw 301 (424)
... ......|+++ ++.|. +. ..++.++.+|.|.+.
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 111 1234567777 55552 22 236777788888844
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.45 E-value=0.86 Score=43.24 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=107.2
Q ss_pred EEecCCCCcEEEEEeCC----------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc--eeEEEecCCCCceEEEEe
Q 014433 131 ARYMPQNPFLIATKTVS----------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 131 ~~~~p~~~~~latg~~d----------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~ 198 (424)
+.|.+++..++.+.... ..|+.|.+.+. .......+...... ...+..++++..+++...
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~--------~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP--------QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS---------GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC--------hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence 99999988777775433 24788888762 12212344443332 568889998885454444
Q ss_pred CC---CcEEEEeCCCCCCCCcccceeeeecCCccE-eeEEEecCCCcEEEEEe---CCCeEEEEEcCCCCCCCCeeeeec
Q 014433 199 DD---AQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 199 ~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.. ..+.+.++.... ... .....+......+ ..+... +..+++... ..+.|...++...........+..
T Consensus 247 ~~~~~s~v~~~d~~~~~-~~~-~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 247 SGTSESEVYLLDLDDGG-SPD-AKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp SSSSEEEEEEEECCCTT-TSS--SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred ccccCCeEEEEeccccC-CCc-CCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence 43 347777876541 001 1122222233333 333333 333443332 346777788877552111224445
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEEC---CCeEEEe
Q 014433 272 HQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCL---GRRLMVW 345 (424)
Q Consensus 272 ~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~---dg~i~iw 345 (424)
+...+.-..+...+.++++....++ .|+++|+.. +.....+.. -.+.|..+...++++.++++.+. -+++.-|
T Consensus 323 ~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 401 (414)
T PF02897_consen 323 EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRY 401 (414)
T ss_dssp -SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEE
T ss_pred CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 5554333333344666777777766 588889882 233333332 23456666666666666555544 3457777
Q ss_pred eCCCCC
Q 014433 346 DLSRID 351 (424)
Q Consensus 346 d~~~~~ 351 (424)
|+.++.
T Consensus 402 d~~t~~ 407 (414)
T PF02897_consen 402 DLATGE 407 (414)
T ss_dssp ETTTTC
T ss_pred ECCCCC
Confidence 777653
No 384
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.098 Score=53.36 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=91.4
Q ss_pred ceeEEEecCCCCce-EEEEeCCCcEEEEeCCCCCCCCcc--ccee---eeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433 180 EGYGLSWSKFKEGH-LLSGSDDAQICLWDINAAPKNKSL--EAMQ---IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (424)
Q Consensus 180 ~v~~l~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 253 (424)
++..+...+++... ++..+++-.|..||++.-...... .++. ..........++.|+|.=...++++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555555654422 333444457889999764322111 1111 11112345678899998776677888999999
Q ss_pred EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC----CCCCEEEEEEcCCC
Q 014433 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS----HKEEVFQVGWNPKN 329 (424)
Q Consensus 254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~----h~~~v~~~~~sp~~ 329 (424)
+..+..... .... .......+|++|+|.|. .++.|...|++.-|-..- +....+.. ....|.+|+|-...
T Consensus 182 V~~~~~~~~--~v~s-~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~l--eik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQ--NVTS-FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSL--EIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhh--hhcc-cCcccceeeEEeccccc-eeeEecCCCeEEEeeccc--ceeecccCCCcCCCcceeEEEEecce
Confidence 988765331 1111 23456789999999998 699999999999886542 21112211 14789999998776
Q ss_pred CcEEE
Q 014433 330 ETILA 334 (424)
Q Consensus 330 ~~~l~ 334 (424)
..+++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 54333
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.38 E-value=0.19 Score=49.65 Aligned_cols=155 Identities=9% Similarity=0.048 Sum_probs=83.7
Q ss_pred ccEeeEEEecCCCcEEEEEe-----CCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----
Q 014433 228 GVVEDVAWHLRHEYLFGSVG-----DDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD----- 295 (424)
Q Consensus 228 ~~v~~~~~~~~~~~~~~s~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d----- 295 (424)
..+.+.+++|++..+.++.. .|. .|.+++. +....++ .. ....+.-.|+|+|.. +++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~l--t~--g~~~t~PsWspDG~~-lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQV--LE--GHSLTRPSWSLDADA-VWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceee--ec--CCCCCCceECCCCCc-eEEEecCcceEE
Confidence 46788999999987765552 233 4555554 2221222 12 224788899999874 4444322
Q ss_pred -------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC---CCCCcccCCCCcCCCCCe
Q 014433 296 -------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL---SRIDEEQTPEDAEDGPPE 365 (424)
Q Consensus 296 -------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~ 365 (424)
+.+.+.++.. +.... .....|..+.|||+|..+++.. +|.|.+=-+ ..+. ... . .
T Consensus 423 v~~~~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~--~~l-----~--~ 487 (591)
T PRK13616 423 VIRDPATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ--YAL-----T--N 487 (591)
T ss_pred EeccCCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc--eee-----c--c
Confidence 2333334433 22211 2356799999999998655544 467766322 2221 000 0 1
Q ss_pred eeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 366 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
......+-...+.++.|..++. |++ +..++...+|.+.-
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~-L~V-~~~~~~~~v~~v~v 526 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDS-LVV-GRSDPEHPVWYVNL 526 (591)
T ss_pred cEEeecccCCccccceEecCCE-EEE-EecCCCCceEEEec
Confidence 1111122233467899999998 553 34445555666543
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.29 E-value=0.94 Score=42.04 Aligned_cols=207 Identities=15% Similarity=0.144 Sum_probs=89.3
Q ss_pred eEEEE-eCCCcEEEEeCCCCCCCCcccceeeeec---CC----ccEeeEEEecCCCcEEEEEe------CCCeEEEEEcC
Q 014433 193 HLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKV---HE----GVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLR 258 (424)
Q Consensus 193 ~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~~~~s~~------~dg~i~i~d~~ 258 (424)
+|+.. -..+.|.|.|+.+......+ .+.+.. +. .....+..-|+++.+ +++- .-|-+.++|-.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l--~KvIe~~ev~~k~g~s~PHT~Hclp~G~im-IS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRL--HKVIEPEEVFEKTGLSRPHTVHCLPDGRIM-ISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EE--EEEE-HHHHHHHH-EEEEEEEEE-SS--EE-EEEEEETTS-S--EEEEE-TT
T ss_pred cEEeeeeccCcEEEEECCCCCCCCce--EeeeCHHHHHhhcCCCCCceeeecCCccEE-EEeccCCCCCCCCcEEEEcCc
Confidence 55554 47889999999866544333 122221 11 222334445677544 3432 23457777776
Q ss_pred CCCCCCCeeeeec---cCCCeeEEEecCCCCeEEEEEe--------------------CCCcEEEEECCCCCCcceEecC
Q 014433 259 TPSVSKPVQSVVA---HQSEVNCLAFNPFNEWILATGS--------------------TDKTVKLFDLRKISTALHTFDS 315 (424)
Q Consensus 259 ~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~tg~--------------------~dg~i~iwd~~~~~~~~~~~~~ 315 (424)
+-.. ...... ....-..+-|.|... +++|.. ...++.+||+.+ .++++++..
T Consensus 166 tf~v---~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idL 240 (461)
T PF05694_consen 166 TFEV---KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDL 240 (461)
T ss_dssp T--E---EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES
T ss_pred cccc---cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEec
Confidence 5432 222222 122345667777555 565543 235899999998 788888875
Q ss_pred CCC--CEEEEEEc--CCCCcEEEEEECCCeEEEeeCCCCCcccC---CCC----cCCC-CCeeeEEEcCCCCCcceEEeC
Q 014433 316 HKE--EVFQVGWN--PKNETILASCCLGRRLMVWDLSRIDEEQT---PED----AEDG-PPELLFIHGGHTSKISDFSWN 383 (424)
Q Consensus 316 h~~--~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~----~~~~-~~~~~~~~~~h~~~v~~~~~~ 383 (424)
... ....+.|. |....=++.+...++|..|--.....=+. ..- .+.. -+.++..+..-..-|+++..|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 432 35566665 44444455555555555554322111000 000 0000 000100001112458999999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCc
Q 014433 384 PCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 384 ~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.|+++|.+++=.+|.|+.||++..
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 999988888889999999999874
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.12 Score=52.84 Aligned_cols=151 Identities=12% Similarity=0.144 Sum_probs=92.1
Q ss_pred ccEeeEEEecCCCcEEEEE-eCCCeEEEEEcCCCCCC-----CCeee---eeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433 228 GVVEDVAWHLRHEYLFGSV-GDDQYLLIWDLRTPSVS-----KPVQS---VVAHQSEVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 228 ~~v~~~~~~~~~~~~~~s~-~~dg~i~i~d~~~~~~~-----~~~~~---~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i 298 (424)
.++..+...++.....+.- +.+-.|..||++.-... .++.. .........++.|+|.-....|+...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566666666654333333 33446889999863321 11111 111223456888999776667778889999
Q ss_pred EEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433 299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 299 ~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
++.-+......+..+.. ...+++++|+|.|.+ ++.|-..|++.-|...-.-. ..+. +|+.. ....|.
T Consensus 181 ~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik-~~ip----~Pp~~------e~yrvl 247 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIK-SEIP----EPPVE------ENYRVL 247 (1405)
T ss_pred hhhhhhhhhhhhcccCc-ccceeeEEeccccce-eeEecCCCeEEEeeccccee-eccc----CCCcC------CCccee
Confidence 99887764444444443 567899999999975 88899999988886643211 1110 01110 135688
Q ss_pred eEEeCCCCCcEEE
Q 014433 379 DFSWNPCEDWVIS 391 (424)
Q Consensus 379 ~~~~~~~~~~~l~ 391 (424)
++.|-....++++
T Consensus 248 ~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 248 SVTWLSTQEFLVV 260 (1405)
T ss_pred EEEEecceeEEEE
Confidence 8999876664433
No 388
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.23 E-value=0.8 Score=40.61 Aligned_cols=229 Identities=14% Similarity=0.151 Sum_probs=118.2
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 218 (424)
..|+.|+.+| +++++.... ..... .. +...|..+...+.-. .|++- .|+.+.++++..-.......
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~---------~~~~~-i~-~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDP---------SKPTR-IL-KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CEEEEEECCC-EEEEEecCC---------cccee-Ee-ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccc
Confidence 3688888888 999998320 11121 21 233499999988665 33333 35999999997654332110
Q ss_pred cee--------eeecCCccEeeEE--EecCCCcEEEEEeCCCeEEEEEcCCCCC-C-CCeeeeeccCCCeeEEEecCCCC
Q 014433 219 AMQ--------IFKVHEGVVEDVA--WHLRHEYLFGSVGDDQYLLIWDLRTPSV-S-KPVQSVVAHQSEVNCLAFNPFNE 286 (424)
Q Consensus 219 ~~~--------~~~~~~~~v~~~~--~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~-~~~~~~~~~~~~v~~v~~~~~~~ 286 (424)
... ........+...+ -...+...+ +......|.+|....... . +....+. -...+.+++|.+ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L-~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~ 149 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRL-CVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--N 149 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEE-EEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--C
Confidence 000 0011223344444 112333334 344556899998877422 1 2344433 357889999983 3
Q ss_pred eEEEEEeCCCcEEEEECCCCCCcceEecC------------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433 287 WILATGSTDKTVKLFDLRKISTALHTFDS------------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 287 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~------------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
.++.|..+ ...+.|+.+ +.+...+.. ...++..+.... +. +|++. |..-.+.|... ...+
T Consensus 150 -~i~v~~~~-~f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e-~Ll~~--~~~g~fv~~~G-~~~r 221 (275)
T PF00780_consen 150 -KICVGTSK-GFYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NE-FLLCY--DNIGVFVNKNG-EPSR 221 (275)
T ss_pred -EEEEEeCC-ceEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeCC-ce-EEEEe--cceEEEEcCCC-CcCc
Confidence 46666644 588889885 333222211 112343444433 33 44432 33333334322 1110
Q ss_pred CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
...... .....++++. .+|+++. + ++.|.||++.++.+.
T Consensus 222 ----------~~~i~W---~~~p~~~~~~--~pyli~~-~-~~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 222 ----------KSTIQW---SSAPQSVAYS--SPYLIAF-S-SNSIEVRSLETGELV 260 (275)
T ss_pred ----------ccEEEc---CCchhEEEEE--CCEEEEE-C-CCEEEEEECcCCcEE
Confidence 011111 2245566664 5655544 4 356999999998654
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.016 Score=48.00 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=80.8
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
.+...+.||.|+-++++..+... +.-..+...-..+. .+. -+++|+.+|.|.+|....-... ...+..-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~-----rse~~~~e~~~v~~---~~~-~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC-----RSERFIDEGQRVVT---ASA-KLMVGTSDGAVYVFNWNLEGAH--SDRVCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhhhhh-----hhhhhhhcceeecc---cCc-eEEeecccceEEEecCCccchH--HHhhhcc
Confidence 35556778888888876542210 00001111111111 123 3458999999999988732210 0111112
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEE--ECCCeEEEeeCCC
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASC--CLGRRLMVWDLSR 349 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~--~~dg~i~iwd~~~ 349 (424)
...|-++--.-+...+..+++.||.|+.|++.- .+.+.....|+ .++..+..+..++ +++.+ |.|..++.|++..
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 233434333322333788999999999999875 55555555666 4555555555553 46666 6777777777765
Q ss_pred C
Q 014433 350 I 350 (424)
Q Consensus 350 ~ 350 (424)
.
T Consensus 179 ~ 179 (238)
T KOG2444|consen 179 I 179 (238)
T ss_pred h
Confidence 4
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.16 E-value=0.8 Score=40.04 Aligned_cols=155 Identities=11% Similarity=0.062 Sum_probs=87.5
Q ss_pred ceeEEEecCCCCcEEEEE--eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433 127 EVNRARYMPQNPFLIATK--TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
.+...++++++..+.++. .....++++.... .....+. ...+..-.|.+++. +.+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----------~~~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----------PVRPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----------cceeecc--CCccccccccCCCC-EEEEEcCCCceE
Confidence 577899999998655555 2334555555443 1111122 23677889999865 555555566666
Q ss_pred EEe-CCCCCCCCcccceee-eecCCccEeeEEEecCCCcEEEEE--eCCCeEEEEEcCCCCCC------CCeeeeeccCC
Q 014433 205 LWD-INAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSV--GDDQYLLIWDLRTPSVS------KPVQSVVAHQS 274 (424)
Q Consensus 205 iwd-~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~--~~dg~i~i~d~~~~~~~------~~~~~~~~~~~ 274 (424)
++. ...+.. . .... ...-...|..+.++|+|..+.+.. ..++.|.+--+...... .++........
T Consensus 91 ~~~~~~~g~~-~---~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 91 VVRDSASGTG-E---PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EEEecCCCcc-e---eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 664 222211 1 1111 111112899999999998776555 23577777765432221 12222223356
Q ss_pred CeeEEEecCCCCeEEEEEe-CCCcEEE
Q 014433 275 EVNCLAFNPFNEWILATGS-TDKTVKL 300 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~-~dg~i~i 300 (424)
.++.++|.+++. +++.+. .++.+..
T Consensus 167 ~v~~v~W~~~~~-L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 167 DVTDVAWSDDST-LVVLGRSAGGPVVR 192 (253)
T ss_pred cceeeeecCCCE-EEEEeCCCCCceeE
Confidence 889999999887 444444 3443443
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.12 E-value=0.023 Score=34.73 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=29.0
Q ss_pred CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
...|..++|+|... +||.+..+|.|.+++++..
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 34688999999999 8999999999999999544
No 392
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.11 E-value=1.2 Score=41.64 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=34.6
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC
Q 014433 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE 318 (424)
Q Consensus 272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~ 318 (424)
....+.+|+.+|.+. +.|+...=|.|.++|+.+ ...++.+++-..
T Consensus 306 ~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~-~~vvrmWKGYRd 350 (415)
T PF14655_consen 306 SKREGESICLSPSGR-LAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD 350 (415)
T ss_pred CCceEEEEEECCCCC-EEEEEcCCCcEEEEECCC-ChhhhhhccCcc
Confidence 344578999999977 677777779999999998 677777766443
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.11 E-value=1.1 Score=41.03 Aligned_cols=248 Identities=15% Similarity=0.165 Sum_probs=114.7
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE----ecCCCceeEEEecCC--CCceEEEEeCC
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL----RGHSTEGYGLSWSKF--KEGHLLSGSDD 200 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~--~~~~l~s~~~d 200 (424)
..+.|+|.|++. ++++ ...|.|++++.... ....+..+ .........++++|+ ...+|+.....
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~~~g~--------~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVDKDGS--------LKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEETTTE--------ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEeCCCc--------CcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 357899999985 5554 66999999993331 00111111 123446789999994 11234433321
Q ss_pred ---------CcEEEEeCCCCCCC-Cccc-ceeeeec---CCccEeeEEEecCCCcEEEEEeCC-------------CeEE
Q 014433 201 ---------AQICLWDINAAPKN-KSLE-AMQIFKV---HEGVVEDVAWHLRHEYLFGSVGDD-------------QYLL 253 (424)
Q Consensus 201 ---------g~i~iwd~~~~~~~-~~~~-~~~~~~~---~~~~v~~~~~~~~~~~~~~s~~~d-------------g~i~ 253 (424)
..|.-|........ ...+ .+..... ....-..|.|.|++ .|+++.+.. |.|.
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~il 151 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKIL 151 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEE
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEE
Confidence 23444444333100 0011 1111111 22345669999999 455555433 2333
Q ss_pred EEEcCCCC-----------CCCCeeeeeccCCCeeEEEecCC-CCeEEEE-EeCCCcEEEEECCCCC-------------
Q 014433 254 IWDLRTPS-----------VSKPVQSVVAHQSEVNCLAFNPF-NEWILAT-GSTDKTVKLFDLRKIS------------- 307 (424)
Q Consensus 254 i~d~~~~~-----------~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~t-g~~dg~i~iwd~~~~~------------- 307 (424)
-.+....- ....+. ..++. ....++|+|. +. ++++ -+.++.=.|--++...
T Consensus 152 ri~~dG~~p~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~ 228 (331)
T PF07995_consen 152 RIDPDGSIPADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY 228 (331)
T ss_dssp EEETTSSB-TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred EecccCcCCCCCccccCCCceEEEE-EeCCC-ccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence 33332110 000010 11222 2467899998 54 4433 2233322222222110
Q ss_pred ---------------CcceEecCCCCCEEEEEEcCCCC------cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433 308 ---------------TALHTFDSHKEEVFQVGWNPKNE------TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL 366 (424)
Q Consensus 308 ---------------~~~~~~~~h~~~v~~~~~sp~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 366 (424)
.|+..+..| ..++.+.|..... .+|++.-..+.|....+....... ..
T Consensus 229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~----------~~ 297 (331)
T PF07995_consen 229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT----------EE 297 (331)
T ss_dssp TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE----------EE
T ss_pred CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc----------ce
Confidence 234444443 5677777764321 355555556677777765332110 11
Q ss_pred eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433 367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 400 (424)
...+......+.++++.|+|. |+++...+|.|.
T Consensus 298 ~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 298 EEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp EEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred EEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 111234455799999999999 777777788764
No 394
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=1.7 Score=42.95 Aligned_cols=183 Identities=12% Similarity=0.174 Sum_probs=90.0
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec
Q 014433 146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV 225 (424)
Q Consensus 146 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 225 (424)
..-.|+||++.. .....+.-...++..+.|+.+.. |++...+|++++|++-....... . .....
T Consensus 62 a~~~I~If~~sG-----------~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~ie~~-s--vg~e~ 125 (829)
T KOG2280|consen 62 ARPYIRIFNISG-----------QLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEFIESN-S--VGFES 125 (829)
T ss_pred cceeEEEEeccc-----------cchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhhhccc-c--ccccc
Confidence 345688999876 22323332333788999998654 88889999999999864422110 0 00122
Q ss_pred CCccEeeEEEecCCCcEEEEEeCCCeEEE-EEcCCCCCCCCeeeeeccCCCeeEEEecCCC--CeEEEEEe-CCCcEEEE
Q 014433 226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLI-WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--EWILATGS-TDKTVKLF 301 (424)
Q Consensus 226 ~~~~v~~~~~~~~~~~~~~s~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~l~tg~-~dg~i~iw 301 (424)
....|..+.+...| ++ +-..+|.+.+ -+...+.. ...........+-+|-...+.+ ..+++--. ..+ ..++
T Consensus 126 ~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~ 200 (829)
T KOG2280|consen 126 QMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHIC 200 (829)
T ss_pred ccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccc
Confidence 23345555555554 22 3334455443 33333221 1111111111111222222221 11111111 111 1111
Q ss_pred ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 302 d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
-..........+....+.+..+..||+.+ +|+--...|.|.+-.+...
T Consensus 201 q~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 201 QVEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDLS 248 (829)
T ss_pred ceecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecchh
Confidence 11211122233333346788999999986 7888888998888776654
No 395
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.92 E-value=1.3 Score=41.72 Aligned_cols=152 Identities=13% Similarity=0.174 Sum_probs=87.7
Q ss_pred EEecCCCCceEE-EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC-------cEEEEEeCCCeEEEE
Q 014433 184 LSWSKFKEGHLL-SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-------YLFGSVGDDQYLLIW 255 (424)
Q Consensus 184 l~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~s~~~dg~i~i~ 255 (424)
+-.+.+..++|+ .|..-..++-.|++.++. +..+..|..- -+.|.|... .-+ +|-.+..|.-.
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkv------veeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrI 542 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKV------VEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRI 542 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeeccccee------eeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEe
Confidence 333333333443 455555666667766643 3334444433 455655432 123 45566777777
Q ss_pred EcCCCCCCCCeeeee--ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEE
Q 014433 256 DLRTPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 256 d~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l 333 (424)
|.|.....-.+...+ .......|..-...| ++|+|+..|-|++||--. .+....+.+-...|..+..+.+|..+|
T Consensus 543 DPR~~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~il 619 (776)
T COG5167 543 DPRARGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHIL 619 (776)
T ss_pred cccccCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEE
Confidence 877654211111111 112233344433333 599999999999999653 344455667788999999999999777
Q ss_pred EEEECCCeEEEeeCCC
Q 014433 334 ASCCLGRRLMVWDLSR 349 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~ 349 (424)
||| ...+.+-|++-
T Consensus 620 aTC--k~yllL~d~~i 633 (776)
T COG5167 620 ATC--KNYLLLTDVPI 633 (776)
T ss_pred Eee--cceEEEEeccc
Confidence 776 34577777753
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.91 E-value=1.1 Score=39.29 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=88.1
Q ss_pred cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE-CCCCC
Q 014433 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD-LRKIS 307 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd-~~~~~ 307 (424)
.+.+.++++++..+.+....++.-.+|-.+.+.....+. ....+..-.|++++. +.+....+...+++. .....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999998665554233333344333333211111 234788889999965 565655566666663 22212
Q ss_pred CcceEecCC--CCCEEEEEEcCCCCcEEEEEE--CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC
Q 014433 308 TALHTFDSH--KEEVFQVGWNPKNETILASCC--LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN 383 (424)
Q Consensus 308 ~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 383 (424)
......... ...|+.+.+||+|..+.+... .++.|.+=-+......... .-...+.........+.+++|.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~-----~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR-----RLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc-----eeccceEecccccCcceeeeec
Confidence 222222222 128999999999987555542 3566776655432211000 0001122222334578999999
Q ss_pred CCCCcEEEEEeCCCcEEE
Q 014433 384 PCEDWVISSVAEDNILQI 401 (424)
Q Consensus 384 ~~~~~~l~s~~~dg~i~v 401 (424)
+++..++++...++.+..
T Consensus 175 ~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCEEEEEeCCCCCceeE
Confidence 999843344344443443
No 397
>PHA03098 kelch-like protein; Provisional
Probab=95.66 E-value=0.81 Score=45.08 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=48.1
Q ss_pred CcEEEEEeCC------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--------cEEEEECCC
Q 014433 240 EYLFGSVGDD------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--------TVKLFDLRK 305 (424)
Q Consensus 240 ~~~~~s~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--------~i~iwd~~~ 305 (424)
..+++.||.+ ..+..||+.+..- ..+..+........++.. +..+++.|+.++ .+.+||..+
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEEE---CCEEEEECCccCCCCCcccceEEEecCCC
Confidence 4577777732 4588899887542 222211111111122222 334777776532 388888875
Q ss_pred CC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCCC
Q 014433 306 IS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSR 349 (424)
Q Consensus 306 ~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~ 349 (424)
.. ..+..+.........+.+ ++ .+++.|+.+ ..+.+||..+
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence 21 111111111111122222 34 466666654 3567777665
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.58 E-value=0.0061 Score=60.03 Aligned_cols=135 Identities=11% Similarity=0.097 Sum_probs=77.3
Q ss_pred CcEEEEEEeccCCceeEEEecCC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEE------
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS------ 185 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~--~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~------ 185 (424)
+.+.+.-.-+-...+.-+.|+|- +...+..+-.++.|++.+++.. ....+.+|...++.++
T Consensus 169 ~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~ 237 (1283)
T KOG1916|consen 169 PQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGV 237 (1283)
T ss_pred cceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH-----------HHHHHHhcCCCcccHHHHhhch
Confidence 34444433344456677788772 3346777888899999888762 1122445666555544
Q ss_pred -----ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEecCC---------CcEEEEEeCCC
Q 014433 186 -----WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRH---------EYLFGSVGDDQ 250 (424)
Q Consensus 186 -----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~---------~~~~~s~~~dg 250 (424)
.+|+|. .|+.++.||.++.|.+.-... ....++..++.|. .+-.|.-++... ..+|-+...+.
T Consensus 238 ~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nr 315 (1283)
T KOG1916|consen 238 LKLASLSPDGT-VFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNR 315 (1283)
T ss_pred hhheeeCCCCc-EEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCc
Confidence 477777 688888888888887653322 2224455566666 333333333221 12232333456
Q ss_pred eEEEEEcCCCC
Q 014433 251 YLLIWDLRTPS 261 (424)
Q Consensus 251 ~i~i~d~~~~~ 261 (424)
.+++|....-+
T Consensus 316 e~k~w~~a~w~ 326 (1283)
T KOG1916|consen 316 EEKFWAEAPWQ 326 (1283)
T ss_pred ceeEeeccchh
Confidence 67888765543
No 399
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.56 E-value=2.5 Score=41.05 Aligned_cols=154 Identities=8% Similarity=0.055 Sum_probs=77.2
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccE-eeEEEecCCCcEEEEEe---------CCCeEEEEEcCCCCC
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVG---------DDQYLLIWDLRTPSV 262 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~s~~---------~dg~i~i~d~~~~~~ 262 (424)
.++.++.+|.|..+|.++++............ ....+ ....+. +..++ .++ .+|.+..+|..+++.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCce
Confidence 68888889999999998886543322110000 00001 111122 12233 333 367889999988774
Q ss_pred CCCeeeeec----------------cC-CCe-eEEEecCCCCeEEEEEeCCC------------------cEEEEECCCC
Q 014433 263 SKPVQSVVA----------------HQ-SEV-NCLAFNPFNEWILATGSTDK------------------TVKLFDLRKI 306 (424)
Q Consensus 263 ~~~~~~~~~----------------~~-~~v-~~v~~~~~~~~~l~tg~~dg------------------~i~iwd~~~~ 306 (424)
.-....... +. ..+ .+.++++.+. +++.++.++ .|.-+|+.+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t- 265 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT- 265 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC-
Confidence 211111000 00 001 1234444444 466666554 688889887
Q ss_pred CCcceEecCCCCCE------EEEEEc----CCC--CcEEEEEECCCeEEEeeCCCCCc
Q 014433 307 STALHTFDSHKEEV------FQVGWN----PKN--ETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 307 ~~~~~~~~~h~~~v------~~~~~s----p~~--~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
++.+-.++.-.... ....+. -++ ..+++.++.+|.+...|..++..
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 55554443211100 000111 112 12567777888888888887754
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.47 E-value=0.0032 Score=61.91 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=61.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceeEEEecCC--CCceEEEE
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKF--KEGHLLSG 197 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~--~~~~l~s~ 197 (424)
+.+|.|-.++|...+.-.++ -.-|...||++.....+ ..+...+ ..-...+.-+.|.|- .+.++..+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~------iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~ 201 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE------IQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG 201 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccc------cccceEEeecCcCCCCcceeeecccccccceeeec
Confidence 45678888888542211122 33478899998763222 2222211 122334455666653 22357777
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEE
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS 245 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 245 (424)
-.++.|++.+.+... ...+.+|...+.+++|...|-.+++.
T Consensus 202 ~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~ 242 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLAS 242 (1283)
T ss_pred cCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhhee
Confidence 788999988876542 13355688888888876665444433
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=1.6 Score=38.09 Aligned_cols=172 Identities=12% Similarity=0.194 Sum_probs=98.8
Q ss_pred cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-cCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC
Q 014433 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWILATGSTDKTVKLFDL 303 (424)
Q Consensus 225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~ 303 (424)
+-...+.++.|+|+.+.+|++....-.| |+=...+.. +.++.- .-...-.|.+...|. +.++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~i-VElt~~Gdl---irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAI-VELTKEGDL---IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceE-EEEecCCce---EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence 4455699999999999998665544444 443333443 333211 123445677776565 3445556778888877
Q ss_pred CCCCCc---------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC-CeeeEEEcCC
Q 014433 304 RKISTA---------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP-PELLFIHGGH 373 (424)
Q Consensus 304 ~~~~~~---------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~h 373 (424)
...... +......+..--.++|.|.... |..+-.-.-+.||.+.............+.. ..-++
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f----- 231 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF----- 231 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccccCcccccceE-----
Confidence 642211 1111222567788999999875 5566666667787776432111111000000 00111
Q ss_pred CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
-..|.++.|++....+++-+.+++.+.--+...+
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 2247888999876667888788888777777665
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.35 E-value=1.6 Score=43.44 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=74.6
Q ss_pred cEeeEEEecC-CCcEEEEEeCCCeEEEEEcCC-------C----------CCCCCeeeeeccCCCeeEEEec--CCCCeE
Q 014433 229 VVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRT-------P----------SVSKPVQSVVAHQSEVNCLAFN--PFNEWI 288 (424)
Q Consensus 229 ~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~-------~----------~~~~~~~~~~~~~~~v~~v~~~--~~~~~~ 288 (424)
.|+.|....- +..+|+.|.+||.|.+|.+++ . ...+|...+. ....+..++++ ... ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence 4566654432 345778899999999997631 0 0112222222 34578889987 544 48
Q ss_pred EEEEeCCCcEEEEECCCCCC--cceEecCCCCCEEEEEEcCCC--C---cEEEEEECCCeEEEeeC
Q 014433 289 LATGSTDKTVKLFDLRKIST--ALHTFDSHKEEVFQVGWNPKN--E---TILASCCLGRRLMVWDL 347 (424)
Q Consensus 289 l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~~~~sp~~--~---~~l~s~~~dg~i~iwd~ 347 (424)
||+++....|.||-...... ....-..|...|-+|+|-++. + -.+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888876554211 111111356788999998754 2 26778888999999888
No 403
>PRK10115 protease 2; Provisional
Probab=95.29 E-value=3.9 Score=41.59 Aligned_cols=200 Identities=6% Similarity=0.026 Sum_probs=99.6
Q ss_pred ceeEEEecCCCCcEEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC--
Q 014433 127 EVNRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-- 200 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 200 (424)
.+..+.++|+++.++.+...+| .|++.|+.+. ... ...+.+ . -..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--------~~l-~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--------NWY-PELLDN-V--EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--------CCC-CccccC-c--ceEEEEeeCCCEEEEEEecCCC
Confidence 4567889999984444433333 6888888651 100 111111 1 14699999988655654432
Q ss_pred ---CcEEEEeCCCCCCCCcccceeeeecCCccEe-eEEEecCCCcEEEEEe--CCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433 201 ---AQICLWDINAAPKNKSLEAMQIFKVHEGVVE-DVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 201 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
..|..+++.++.... ...+........ .+..+.++..+++... .++.+.+++...... .+...+.....
T Consensus 196 ~~~~~v~~h~lgt~~~~d----~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 270 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQD----ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKD 270 (686)
T ss_pred CCCCEEEEEECCCChhHC----eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCC
Confidence 357778887663211 112222222222 2333446666664443 346788888643221 11111211122
Q ss_pred CeeEEEecCCCCeEEEEEeCC---CcEEEEECCCCCCcceEecCC-C-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433 275 EVNCLAFNPFNEWILATGSTD---KTVKLFDLRKISTALHTFDSH-K-EEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~h-~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
....+. +..+. +++....+ ..|...++.... ....+..+ . ..|..+.+.. +.++++...+|.-+++-+.
T Consensus 271 ~~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 271 HEYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CEEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence 222222 33233 33333222 234444554322 22344444 2 3688888873 3578888888876666554
No 404
>PHA03098 kelch-like protein; Provisional
Probab=95.06 E-value=1.2 Score=44.02 Aligned_cols=152 Identities=11% Similarity=0.083 Sum_probs=70.5
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC------CcEEEEECCCCC-
Q 014433 240 EYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD------KTVKLFDLRKIS- 307 (424)
Q Consensus 240 ~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d------g~i~iwd~~~~~- 307 (424)
..+++.||.+ ..+..||..+..- .....+...... .+++.. +..+++.|+.+ ..+..||..+..
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKW-REEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCce-eeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 4577788765 3477788876542 111111111111 122222 33477777742 358888887521
Q ss_pred CcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--------eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGR--------RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD 379 (424)
Q Consensus 308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 379 (424)
..+..+....... +++. .++ .+++.|+.++ .+.+||..+..-.... .+.. .......
T Consensus 419 ~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~--------~~~~----~r~~~~~ 483 (534)
T PHA03098 419 SKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS--------SLNF----PRINASL 483 (534)
T ss_pred eecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCC--------CCCc----ccccceE
Confidence 1111111111111 1222 233 4666665431 3777887654321110 0000 0001111
Q ss_pred EEeCCCCCcEEEEEeCC-----CcEEEEecCCccCCCCC
Q 014433 380 FSWNPCEDWVISSVAED-----NILQIWQMAENIYHDED 413 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~~~~~~ 413 (424)
+.+ ++. +++.||.+ +.+.+||+.++.+....
T Consensus 484 ~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 484 CIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred EEE--CCE-EEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 222 455 67777654 47889999888765443
No 405
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.06 E-value=2.1 Score=42.71 Aligned_cols=121 Identities=10% Similarity=0.058 Sum_probs=73.5
Q ss_pred eeEEEecCC-CCceEEEEeCCCcEEEEeCCCC--------------CCCCcccceeeeecCCccEeeEEEe--cCCCcEE
Q 014433 181 GYGLSWSKF-KEGHLLSGSDDAQICLWDINAA--------------PKNKSLEAMQIFKVHEGVVEDVAWH--LRHEYLF 243 (424)
Q Consensus 181 v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~ 243 (424)
|+.|....- +...|+.|..||.|.+|.++.- .....+++...+. ....++.++++ ... .++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEE
Confidence 444443322 3347899999999999976321 0001112222222 35588999998 554 578
Q ss_pred EEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC--C---eEEEEEeCCCcEEEEEC
Q 014433 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--E---WILATGSTDKTVKLFDL 303 (424)
Q Consensus 244 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~---~~l~tg~~dg~i~iwd~ 303 (424)
|+++....|.||-............-..+..-|.+|+|-++. + -.+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888887655422111111112356678899987654 1 25778888999999888
No 406
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=2.4 Score=39.43 Aligned_cols=123 Identities=15% Similarity=0.239 Sum_probs=79.0
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.-.|+|.+|+|++|++ ++|+--.+.+|.+++....... .....+.+..+..|.+..|+.+.. +|.....|
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~------l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G- 133 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ------LEYTQECKTKNANILGFCWTSSTE--IAFITDQG- 133 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh------hHHHHHhccCcceeEEEEEecCee--EEEEecCC-
Confidence 3457899999999986 8999999999999998542111 111222333445689999987633 66555444
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCC
Q 014433 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTP 260 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~ 260 (424)
+-+|.+.... ..++..+.|...|+...|.++.+.++.+.+ ...++.=+-++++
T Consensus 134 ~e~y~v~pek-----rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 134 IEFYQVLPEK-----RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEEchhh-----hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 5566554322 234556678888999999998776555544 3444444444443
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.51 E-value=0.15 Score=30.18 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=26.5
Q ss_pred CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCC
Q 014433 274 SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 274 ~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~ 305 (424)
+.+.++.|+|... -+|+.+-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999997544 5788888889999999995
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.45 E-value=4.4 Score=38.11 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=81.1
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC---CCCceEEEEeCCCcEEEEeCCCC
Q 014433 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAA 211 (424)
Q Consensus 135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~ 211 (424)
+++...|++|+..|.++||+.......+ ....--..-..+|..+..-+ ......++.-.-..+.+|.+...
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~------~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~ 107 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQP------EDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLV 107 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCC------ccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEec
Confidence 4455689999999999999985521111 11111223456787777532 22222333355577888887432
Q ss_pred CCC----CcccceeeeecCC--ccEeeEEEecC----CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 212 PKN----KSLEAMQIFKVHE--GVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 212 ~~~----~~~~~~~~~~~~~--~~v~~~~~~~~----~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
... .... +.....|. .....+++-|- +..++++=+.||.+.+|+-+.-.. ..+...---.-.+.|
T Consensus 108 ~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~~llPgPl~Y 182 (418)
T PF14727_consen 108 DGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPDFLLPGPLCY 182 (418)
T ss_pred CCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCCCCCCcCeEE
Confidence 211 1111 22222232 23334444332 246778889999999998765221 111111111223455
Q ss_pred cCCCCeEEEEEeCCCcEEEEEC
Q 014433 282 NPFNEWILATGSTDKTVKLFDL 303 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iwd~ 303 (424)
.+... .|++++.+..+..|..
T Consensus 183 ~~~tD-sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 183 CPRTD-SFVTASSSWTLECYKY 203 (418)
T ss_pred eecCC-EEEEecCceeEEEecH
Confidence 55444 3556666666666543
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.43 E-value=3.1 Score=41.09 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=67.8
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEc--CCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWN--PKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.+.-+.-+..++ +.++-+....+.|||.+. +..-.... ...+.|..+.|. |+++. +++.+....|.++--....
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchh
Confidence 334444444454 333333445799999987 33222111 346789999996 67764 5566667778887543211
Q ss_pred cccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 352 EEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
. ....+ ...+........|+ .+|.+..|.++|. +++.+ ++.+.|++-.-
T Consensus 108 y--~~~~p-~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 108 Y--TNKGP-SWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKWL 157 (631)
T ss_pred h--hcCCc-ccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCCc
Confidence 1 00000 01111112223443 5799999999998 44433 45688876543
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.42 E-value=4.3 Score=37.87 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=85.6
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CC----CceeEEEecCCCCceEEEEe--C----CCcE
Q 014433 137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HS----TEGYGLSWSKFKEGHLLSGS--D----DAQI 203 (424)
Q Consensus 137 ~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~l~~~~~~~~~l~s~~--~----dg~i 203 (424)
.+++++-|-.++.|+|+|+.+.+..+. ....+.. +. .....+---|+|. +++|+- . -|-+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf 159 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPR------LHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGF 159 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-E------EEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCc------eEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcE
Confidence 444555566889999999987544432 1122221 10 1112222335565 566542 2 2346
Q ss_pred EEEeCCCCCCCCcccceeeeec---CCccEeeEEEecCCCcEEEEEe--------------------CCCeEEEEEcCCC
Q 014433 204 CLWDINAAPKNKSLEAMQIFKV---HEGVVEDVAWHLRHEYLFGSVG--------------------DDQYLLIWDLRTP 260 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~~--------------------~dg~i~i~d~~~~ 260 (424)
.+.|-++.. ....+.. ....-.++.|.|..+.++ |.. ...++.+||+.+.
T Consensus 160 ~llD~~tf~------v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 160 VLLDGETFE------VKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp EEE-TTT--------EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred EEEcCcccc------ccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 666665432 2222221 123456778888765443 432 3468999999986
Q ss_pred CCCCCeeeeeccCC--CeeEEE--ecCCCCeEEEEEeCCCcEEEEECCCCC----CcceEecC-----------------
Q 014433 261 SVSKPVQSVVAHQS--EVNCLA--FNPFNEWILATGSTDKTVKLFDLRKIS----TALHTFDS----------------- 315 (424)
Q Consensus 261 ~~~~~~~~~~~~~~--~v~~v~--~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~~----------------- 315 (424)
+. ++++.-... .+.-|. .+|...+-++.+...++|..|--...+ +.+..+..
T Consensus 233 ~~---~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 233 KL---LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp EE---EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred cE---eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 64 555543222 233444 456566555555555555555332111 11111111
Q ss_pred CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 316 h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
-..-|+.|..|.+.+.+.+++=.+|.|+.||+....
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 124579999999998777777789999999998754
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.39 E-value=0.16 Score=30.12 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.1
Q ss_pred CceeEEEecCCCC--cEEEEEeCCCeEEEEeCCC
Q 014433 126 GEVNRARYMPQNP--FLIATKTVSAEVYVFDYSK 157 (424)
Q Consensus 126 ~~v~~~~~~p~~~--~~latg~~dg~v~iw~~~~ 157 (424)
++|.+++|+|... .+||..-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998554 6888888889999999984
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.27 E-value=2.4 Score=37.92 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=75.5
Q ss_pred ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.-.+.+..+..++++. ++|++..-....-|+-.. ..+.+ .-+.....|..+.|.|++. |......|.
T Consensus 142 ~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~--------~~w~~--~~r~~~~riq~~gf~~~~~--lw~~~~Gg~ 208 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQ--------TTWQP--HNRNSSRRIQSMGFSPDGN--LWMLARGGQ 208 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------SS-EE--EE--SSS-EEEEEE-TTS---EEEEETTTE
T ss_pred CCcceeEeEEECCCCc-EEEEECcccEEEEecCCC--------ccceE--EccCccceehhceecCCCC--EEEEeCCcE
Confidence 3447788888899886 777765444445677543 11222 2223457899999999865 444458888
Q ss_pred EEEEeCCCCCCCCccc-ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433 203 ICLWDINAAPKNKSLE-AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 203 i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~ 281 (424)
|+.=+..... ..+. .+.......-.+.+++|.+.+. ++|+|+ .|.+ +.....++..+.......-...++.|.|
T Consensus 209 ~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 209 IQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp EEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred EEEccCCCCc--cccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEE
Confidence 8887621110 1110 0111111233588999998864 665554 5543 4555555543222222233456888888
Q ss_pred cCCCCeEEEEEeCCCcEEEE
Q 014433 282 NPFNEWILATGSTDKTVKLF 301 (424)
Q Consensus 282 ~~~~~~~l~tg~~dg~i~iw 301 (424)
.+... -++.| .+|.|.-|
T Consensus 284 ~~~~~-gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 284 VNPDK-GFVLG-QDGVLLRY 301 (302)
T ss_dssp EETTE-EEEE--STTEEEEE
T ss_pred cCCCc-eEEEC-CCcEEEEe
Confidence 76544 46555 57776544
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.25 E-value=1.4 Score=43.45 Aligned_cols=114 Identities=19% Similarity=0.229 Sum_probs=67.3
Q ss_pred cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec--CCCCeEEEEEeCCCcEEEEECC--
Q 014433 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN--PFNEWILATGSTDKTVKLFDLR-- 304 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~~~l~tg~~dg~i~iwd~~-- 304 (424)
.+.-+.-+..++ +.++-+....+.|||.+.+.. ..-..+ ...+.|..+.|. |+++.+|++| ..+.|.+|...
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~l-E~~~~f-~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVL-EYEESF-SEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRY 106 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEE-EEeeee-cCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccch
Confidence 333444444443 323344456799999987652 111122 347789999885 6788656555 56788887542
Q ss_pred ---CC---CCcceEe--cCCC-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433 305 ---KI---STALHTF--DSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 305 ---~~---~~~~~~~--~~h~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+. ..++..+ ..|+ .+|.+..|.++|. |+.|+ ++.+.|+|-..
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDKWL 157 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECCCc
Confidence 11 1233333 2333 6899999999994 44444 44688887544
No 414
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.23 E-value=0.75 Score=43.16 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=89.9
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe------EEEEEeCCCcEEEEECCCCCCcce
Q 014433 238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW------ILATGSTDKTVKLFDLRKISTALH 311 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~------~l~tg~~dg~i~iwd~~~~~~~~~ 311 (424)
+...++..|+.-..++-.|+..++. +.....|..- -+.|.|...+ .-++|-.+..|.-.|.|-.+..+.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv---veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV---VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeeccccee---eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 3444555666677788889888775 5555555443 6777775321 123566677777778886554443
Q ss_pred EecCCCCCE-----EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014433 312 TFDSHKEEV-----FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 312 ~~~~h~~~v-----~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
.... ...+ .+..-...| ++|+++..|-|++||--.... ...+.+-...|..+..+.+|
T Consensus 553 v~es-KdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA--------------KtalP~lG~aIk~idvta~G 615 (776)
T COG5167 553 VVES-KDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA--------------KTALPGLGDAIKHIDVTANG 615 (776)
T ss_pred eeee-hhccccccccccccccCc--eEEEecCCCceeeehhhcchh--------------hhcCcccccceeeeEeecCC
Confidence 3332 2222 233333334 799999999999999643221 22234445678899999999
Q ss_pred CcEEEEEeCCCcEEEEecC
Q 014433 387 DWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 387 ~~~l~s~~~dg~i~vw~~~ 405 (424)
.++|+||- ..+.+-|+.
T Consensus 616 k~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 616 KHILATCK--NYLLLTDVP 632 (776)
T ss_pred cEEEEeec--ceEEEEecc
Confidence 98777753 467776664
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.19 E-value=7.3 Score=39.60 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=51.8
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC---CCCCCCCCCCCcEEE--------ecCCCceeEEEecCCC--Cc
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP---SKPPLDGACSPDLRL--------RGHSTEGYGLSWSKFK--EG 192 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~---~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~--~~ 192 (424)
-.|..|.++|.|. ++|..|..| |.|-.+...- .............++ ..+...|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4788999999997 566656554 5555554311 111000000111111 1345678999999974 23
Q ss_pred eEEEEeCCCcEEEEeCCCCC
Q 014433 193 HLLSGSDDAQICLWDINAAP 212 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~ 212 (424)
.|+.=..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 68888889999999997544
No 416
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.15 E-value=4.2 Score=36.71 Aligned_cols=244 Identities=12% Similarity=0.051 Sum_probs=118.3
Q ss_pred EEecCCCCcEEEE---------EeCCCeEEEEeCCCCCCCCCCCCCCCCcEE--EecC-C----CceeEEEecCCCCceE
Q 014433 131 ARYMPQNPFLIAT---------KTVSAEVYVFDYSKHPSKPPLDGACSPDLR--LRGH-S----TEGYGLSWSKFKEGHL 194 (424)
Q Consensus 131 ~~~~p~~~~~lat---------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~--~~~h-~----~~v~~l~~~~~~~~~l 194 (424)
+..+|+++.+.++ |-..-.|.+||..+ ..+... +... . .....++++.+++ ++
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T----------L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~ 109 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT----------LSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FL 109 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT----------TEEEEEEEETTS-B--BS--GGGEEE-TTSS-EE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc----------CcccceEecCCcchheecccccceEEccCCc-EE
Confidence 5678888743332 22345899999988 222222 2211 1 1123345566665 33
Q ss_pred EEE--eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee--eee
Q 014433 195 LSG--SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVV 270 (424)
Q Consensus 195 ~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~--~~~ 270 (424)
+.. +--.+|.|.|+...+. +..+. -.+ +. ..-|.++.-|.+.|.||.+.-..+.......... .+.
T Consensus 110 ~V~N~TPa~SVtVVDl~~~kv------v~ei~-~PG-C~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAKKV------VGEID-TPG-CW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEEEESSSEEEEEEETTTTEE------EEEEE-GTS-EE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred EEEccCCCCeEEEEECCCCce------eeeec-CCC-EE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 332 2244566677765422 22221 111 22 2224444456788999999999998543211000 111
Q ss_pred ccCCCe-eEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-cceEecCC----------CCCEEEEEEcCCCCcEEEEEEC
Q 014433 271 AHQSEV-NCLAFNPFNEWILATGSTDKTVKLFDLRKIST-ALHTFDSH----------KEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 271 ~~~~~v-~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~h----------~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
.-..++ ..-++...+.. ++--+..|.|+-.|+..... ....+..- .+.-.-+++++....+++.-..
T Consensus 180 ~~~dp~f~~~~~~~~~~~-~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 180 PDDDPLFEHPAYSRDGGR-LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp TTTS-B-S--EEETTTTE-EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred CCCcccccccceECCCCe-EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 111222 22233333443 33467889999999886321 11111110 1233446676654433332221
Q ss_pred -------CC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE-eCCCcEEEEecCCcc
Q 014433 339 -------GR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV-AEDNILQIWQMAENI 408 (424)
Q Consensus 339 -------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~~ 408 (424)
|+ .|-++|+.+. +.+..+.. ...+.++..+.+.+-+|++. ..++.|.+||..++.
T Consensus 259 g~~gsHKdpgteVWv~D~~t~--------------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTH--------------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTT--------------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCCCCccCCceEEEEEECCCC--------------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 12 2555566554 33333331 22477899988766466554 568999999999986
Q ss_pred CCC
Q 014433 409 YHD 411 (424)
Q Consensus 409 ~~~ 411 (424)
+..
T Consensus 324 ~~~ 326 (342)
T PF06433_consen 324 LVR 326 (342)
T ss_dssp EEE
T ss_pred EEe
Confidence 644
No 417
>PRK10115 protease 2; Provisional
Probab=94.12 E-value=7.6 Score=39.53 Aligned_cols=203 Identities=10% Similarity=0.117 Sum_probs=100.9
Q ss_pred ceeEEEecCCCCceEEEEeCCC----cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-----C
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-----Q 250 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g 250 (424)
.+..+.|+|++..+.++.+.+| .|++.|+.++.... ..+. ..-..++|.+++..++.+...+ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----ELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----cccc---CcceEEEEeeCCCEEEEEEecCCCCCCC
Confidence 4567889999884444433334 58888987663211 1111 1114589999988777665433 3
Q ss_pred eEEEEEcCCCCCCCCeeeeeccCCCee-EEEecCCCCeEEEEEeC--CCcEEEEECCCC-CCcceEecCCCCCEEEEEEc
Q 014433 251 YLLIWDLRTPSVSKPVQSVVAHQSEVN-CLAFNPFNEWILATGST--DKTVKLFDLRKI-STALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~tg~~--dg~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~s 326 (424)
.|+.+++.++.. .....+........ .+..+.+++++++.... ++.+.+++.... ..+...+.........+. +
T Consensus 200 ~v~~h~lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 277 (686)
T PRK10115 200 QVWRHTIGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H 277 (686)
T ss_pred EEEEEECCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e
Confidence 677888887631 11222222223333 33334477765544443 357888885432 222222222222223332 3
Q ss_pred CCCCcEEEEEEC-CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 327 PKNETILASCCL-GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 327 p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
..+ .+++.... ....+|..+..... ...+.+.... ....|..+.+. +.+++++...+|.-+++-+.
T Consensus 278 ~~~-~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~-~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQH-RFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPR-ENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCC-EEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCC-CCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence 223 33333332 22344443322100 0112222211 12357777776 44578888888877766554
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.09 E-value=4.2 Score=36.44 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=74.0
Q ss_pred EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (424)
Q Consensus 174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 253 (424)
...-.+.+..+.-++++. ++++++......-||.... ...+ .-..-...|..|.|.|++. +.+ ....|.|+
T Consensus 140 ~~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~----~w~~--~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~ 210 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT----TWQP--HNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQ 210 (302)
T ss_dssp E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S----S-EE--EE--SSS-EEEEEE-TTS--EEE-EETTTEEE
T ss_pred ccCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCc----cceE--EccCccceehhceecCCCC-EEE-EeCCcEEE
Confidence 344557788888888887 6777666555567776432 1111 1122457899999999975 443 44888888
Q ss_pred EEEcC-CCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCC
Q 014433 254 IWDLR-TPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPK 328 (424)
Q Consensus 254 i~d~~-~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~ 328 (424)
.=+.. .... .+++.......-.+..++|.+.+. +.|+|+ .|.+ +..... ++.-+... .-......+.|.+.
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDG-GKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESST-TSS-EE-GGGTTSSS---EEEEEET
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCC-CccceECccccCCCCceEEEEEcCC
Confidence 87721 1111 011111112233478999999876 566655 4543 233333 33333322 22446788888765
Q ss_pred CCcEEEEEECCCeEEEe
Q 014433 329 NETILASCCLGRRLMVW 345 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iw 345 (424)
.. -.+.+.+|.|.-|
T Consensus 287 ~~--gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 DK--GFVLGQDGVLLRY 301 (302)
T ss_dssp TE--EEEE-STTEEEEE
T ss_pred Cc--eEEECCCcEEEEe
Confidence 43 3345667766544
No 419
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.09 E-value=0.008 Score=55.30 Aligned_cols=145 Identities=13% Similarity=0.178 Sum_probs=99.3
Q ss_pred CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
.......|-+.+.+ ++.++.+..+..||-...... -...++...+++|..+++.+++.+-..+.+.+||+.
T Consensus 35 v~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~l--------e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVIL--------ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cccceeeEecCCCc-eehhhhhhHHHhhhhhcceec--------ccCCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 34456778888876 777788888888986433111 112356677899999888887788889999999998
Q ss_pred CCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433 259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
+... ..+..-..+.... +.|++-.+ .++.|...|.+.|+..+. .+.+.....|..++++++|.+.+. .+.++.
T Consensus 106 ~eyt-qqLE~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~--vil~dc 178 (615)
T KOG2247|consen 106 SEYT-QQLESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDY--VILCDC 178 (615)
T ss_pred hhhH-HHHhccCcchHHH--HhhccCCc-cccccccccceEEEeccc-hhhhhhhcccccceeEEEecccce--eeecCc
Confidence 7542 1121111122222 67888776 588888999999999887 444444445889999999999873 444544
Q ss_pred C
Q 014433 339 G 339 (424)
Q Consensus 339 d 339 (424)
|
T Consensus 179 d 179 (615)
T KOG2247|consen 179 D 179 (615)
T ss_pred H
Confidence 4
No 420
>PHA02790 Kelch-like protein; Provisional
Probab=93.97 E-value=3.4 Score=40.07 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC---eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433 240 EYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 240 ~~~~~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~ 305 (424)
..+++.||.++ .+..||.++..- ..+..+.........+++ +..+.+.|+ .+.+||.++
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQW-QFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEE-EeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCC
Confidence 46777887654 467888876541 111111111111222222 334677764 577888765
No 421
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.25 E-value=8.7 Score=37.39 Aligned_cols=98 Identities=7% Similarity=0.059 Sum_probs=55.3
Q ss_pred EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEE-----------------EeCCCcEEEEECC
Q 014433 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILAT-----------------GSTDKTVKLFDLR 304 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~t-----------------g~~dg~i~iwd~~ 304 (424)
+++.++.+|.+..+|.++++..-..... ...++.+| +. +++. ...+|.+.-.|++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 5667888999999999998752211110 11123333 21 2221 1235678888887
Q ss_pred CCCCcceEecCCC--------CCE--EEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 305 KISTALHTFDSHK--------EEV--FQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 305 ~~~~~~~~~~~h~--------~~v--~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+ ++.+-+..... .+. ..+.. .+ .+++.++.||.|+.+|..+++
T Consensus 375 t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 375 T-GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred C-CcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCc
Confidence 7 44444333210 111 11222 23 367788899999999998874
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.98 E-value=7.8 Score=36.09 Aligned_cols=152 Identities=10% Similarity=0.088 Sum_probs=75.8
Q ss_pred CceeEEEecCCCCcEEEEEe-----------CCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 126 GEVNRARYMPQNPFLIATKT-----------VSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~-----------~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
.....|+|.++|. ++++-. ..+ .|.+++-.... +.......+...-....++++.+++ +
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd------G~~d~~~vfa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGD------GKYDKSNVFAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC------CCcceeEEeecCCCCccceeEecCC--E
Confidence 4566789999887 444421 223 77777654311 1111222333334456889988765 3
Q ss_pred EEEEeCCCcEEEEeCCCCCCCC-ccc-ceeeeec----CCccEeeEEEecCCCcEEEEEeC------------------C
Q 014433 194 LLSGSDDAQICLWDINAAPKNK-SLE-AMQIFKV----HEGVVEDVAWHLRHEYLFGSVGD------------------D 249 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~------------------d 249 (424)
++ ++.....++.|........ ..+ .+..+.. +......++|.|++...++.++. .
T Consensus 85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 44 4444433344554322111 111 1111221 23457889999998644433321 1
Q ss_pred CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEE
Q 014433 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg 292 (424)
|.|.-+|..... +..+...-.....++|+|+|. ++++-
T Consensus 164 g~i~r~~pdg~~----~e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 164 GGLFRYNPDGGK----LRVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred ceEEEEecCCCe----EEEEecCcCCCccceECCCCC-EEEEc
Confidence 345555554432 222222223356899999887 55553
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.87 E-value=5.2 Score=33.84 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=70.2
Q ss_pred cEeeEEEecCCCcEEEEEeCCCeEEEEE--cCCCCCCCC--eeeeec---cCC-CeeEEEecCCCCeEEEEEeCCCcEEE
Q 014433 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWD--LRTPSVSKP--VQSVVA---HQS-EVNCLAFNPFNEWILATGSTDKTVKL 300 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d--~~~~~~~~~--~~~~~~---~~~-~v~~v~~~~~~~~~l~tg~~dg~i~i 300 (424)
--+.++|+.+.+.+..+-+.+-.|.-|| ..++....+ +..++. ... ..-.++....|. +.++.-..++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEE
Confidence 3467899988887877888888887787 555543222 222211 011 112234455565 6777778889999
Q ss_pred EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEE
Q 014433 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC 336 (424)
Q Consensus 301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~ 336 (424)
+|..+ ++.+.++......|++++|--..-.+|++.
T Consensus 238 ~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 238 VDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 99998 788999988899999999974322344433
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=92.74 E-value=8.9 Score=37.20 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=32.8
Q ss_pred CCcEEEEEeCC--CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC---cEEEEECCC
Q 014433 239 HEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK---TVKLFDLRK 305 (424)
Q Consensus 239 ~~~~~~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~ 305 (424)
+..+++.||.+ ..+..||..+.. ...+..+.........+.. +..+.+.|+.++ .+..||.++
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~-W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAA-WVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCe-EEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCC
Confidence 34677788754 357788876543 1111111111111222222 334788888654 467788765
No 425
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.67 E-value=1.8 Score=35.39 Aligned_cols=32 Identities=13% Similarity=0.439 Sum_probs=26.9
Q ss_pred CcceEEeCCC-----CCcEEEEEeCCCcEEEEecCCc
Q 014433 376 KISDFSWNPC-----EDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 376 ~v~~~~~~~~-----~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
.|..++|+|. ++.+|++...++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 6889999995 3568999999999999998743
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.55 E-value=6.8 Score=36.47 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=53.7
Q ss_pred ccEeeEEEecCCCcEEEEEe-----------CCC-eEEEEEcCCCC-CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC
Q 014433 228 GVVEDVAWHLRHEYLFGSVG-----------DDQ-YLLIWDLRTPS-VSKPVQSVVAHQSEVNCLAFNPFNEWILATGST 294 (424)
Q Consensus 228 ~~v~~~~~~~~~~~~~~s~~-----------~dg-~i~i~d~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~ 294 (424)
.....|+|.+++. ++++-. ..+ .|.+++-..+. .......+...-...+.+++.+++ ++++ ..
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP 89 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence 3456788888886 443432 223 67666544322 111223333334456889998876 4554 33
Q ss_pred CCcEEEEECCCCC----C--cc-eEecC----CCCCEEEEEEcCCCCcEEEEEE
Q 014433 295 DKTVKLFDLRKIS----T--AL-HTFDS----HKEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 295 dg~i~iwd~~~~~----~--~~-~~~~~----h~~~v~~~~~sp~~~~~l~s~~ 337 (424)
....++.|..... + .+ ..+.. +......++|.|+|. +.++.+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 3333343443211 1 11 12222 234578899999996 444433
No 427
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.49 E-value=7.2 Score=34.47 Aligned_cols=143 Identities=13% Similarity=0.189 Sum_probs=84.8
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-----
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ----- 267 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~----- 267 (424)
.|+.|..+| +.++++..... ..... +...|..+...+.-+.+++- .|+.++++++..-.......
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~-----~~~i~--~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSK-----PTRIL--KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred EEEEEECCC-EEEEEecCCcc-----ceeEe--ecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccccc
Confidence 688999888 89999832211 11111 23349999999877655533 35999999998644321100
Q ss_pred ------eeeccCCCeeEEE--ecCCCCeEEEEEeCCCcEEEEECCCC---C-CcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433 268 ------SVVAHQSEVNCLA--FNPFNEWILATGSTDKTVKLFDLRKI---S-TALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 268 ------~~~~~~~~v~~v~--~~~~~~~~l~tg~~dg~i~iwd~~~~---~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s 335 (424)
........+..++ -...+...|+++. ...|.+|..... . ...+.+.. ...+..++|.++ .++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~~---~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLGN---KICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeCC---EEEE
Confidence 0111223344444 2233444455444 558998887652 1 34455554 478899999943 4666
Q ss_pred EECCCeEEEeeCCCCC
Q 014433 336 CCLGRRLMVWDLSRID 351 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~ 351 (424)
|..++ ..+.|+.++.
T Consensus 154 ~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGS 168 (275)
T ss_pred EeCCc-eEEEecCCCC
Confidence 66555 7888988654
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=5.7 Score=32.99 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=92.2
Q ss_pred cEEEEEEeccCCcee--EEEecCCCCcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433 115 KVQIIQQINHDGEVN--RARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~--~~~~~p~~~~~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
..+++++..|..... .+.+. ++ +++.+.+.- ..|++||+... +......-....+.+=-...-+
T Consensus 33 ~~evi~~yphDs~sfTQGL~~~-~g-~i~esTG~yg~S~ir~~~L~~g----------q~~~s~~l~~~~~FgEGit~~g 100 (262)
T COG3823 33 VYEVIRTYPHDSTSFTQGLEYL-DG-HILESTGLYGFSKIRVSDLTTG----------QEIFSEKLAPDTVFGEGITKLG 100 (262)
T ss_pred ceEEEEeccCchhhhhcceeee-CC-EEEEeccccccceeEEEeccCc----------eEEEEeecCCccccccceeecc
Confidence 346777788875433 33333 23 566665543 47999999862 1111111001111111111113
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
..+.+-.-.+|.-..+|.++-+.... +. ..+.=+.++ .++.+++ .+....+++.-|.++-.....+...
T Consensus 101 d~~y~LTw~egvaf~~d~~t~~~lg~------~~-y~GeGWgLt--~d~~~Li-msdGsatL~frdP~tfa~~~~v~VT- 169 (262)
T COG3823 101 DYFYQLTWKEGVAFKYDADTLEELGR------FS-YEGEGWGLT--SDDKNLI-MSDGSATLQFRDPKTFAELDTVQVT- 169 (262)
T ss_pred ceEEEEEeccceeEEEChHHhhhhcc------cc-cCCcceeee--cCCcceE-eeCCceEEEecCHHHhhhcceEEEE-
Confidence 32334455678888888876543222 21 234445555 3455565 4444556666666553332222211
Q ss_pred ccCCC---eeEEEecCCCCeEEEEEeCCCcEEEE-----------ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEE
Q 014433 271 AHQSE---VNCLAFNPFNEWILATGSTDKTVKLF-----------DLRKISTALHTFDSHKEEVFQVGWNPKNETILASC 336 (424)
Q Consensus 271 ~~~~~---v~~v~~~~~~~~~l~tg~~dg~i~iw-----------d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~ 336 (424)
....+ ++-+.|- +|. +.|-.-.+..|... |+......+..-..|..-.+.+++.|++..++++|
T Consensus 170 ~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 170 DDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11112 2223332 132 33333333333333 43332222222233455678899999987778776
No 429
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.17 E-value=8 Score=34.27 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=115.7
Q ss_pred ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceeEEEecCCC-----------
Q 014433 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSKFK----------- 190 (424)
Q Consensus 127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~----------- 190 (424)
.-..|+++|.+. +-++....+...+||........ ........+.. .....+.+.|+...
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g---~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPL---VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccC---CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 346799999886 56666678899999987321110 00111222221 22356777776432
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccE-eeEEEe--cCCCcEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVV-EDVAWH--LRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~--~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
...++.+++||+|.-|...-....-. .....+. .....| ..+++. ..+..|+++--..++|.|||-.-.....+
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~-~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~- 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT-RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP- 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc-ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-
Confidence 12367789999999998654322000 0011111 112223 334443 33567777777889999998654321100
Q ss_pred eee-----eccCCC-----------eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCC
Q 014433 267 QSV-----VAHQSE-----------VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPK 328 (424)
Q Consensus 267 ~~~-----~~~~~~-----------v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~ 328 (424)
..+ .+.-.+ |+-..-.+... -=+.|..-|.|-+||+. +..++++.. .-..-+.|+..|-
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChh
Confidence 000 000001 11111112111 12223344789999987 567776642 2234566777652
Q ss_pred -----CCcEEEEEECCCeEEEeeCCCCC
Q 014433 329 -----NETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 329 -----~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
...+|+.--.||+|..||..++.
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 22477777779999999998764
No 430
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.03 E-value=11 Score=35.55 Aligned_cols=156 Identities=10% Similarity=0.154 Sum_probs=89.7
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec---C-CCcEEEEEeCCCeEEEEEcCCCCCC
Q 014433 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---R-HEYLFGSVGDDQYLLIWDLRTPSVS 263 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~-~~~~~~s~~~dg~i~i~d~~~~~~~ 263 (424)
+++...|++||..|.++||+......... ..+-. ..-..+|..+..-+ . ....+ +.-.-..+.||.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE-~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLE-TQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cEEEE-EecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCC
Confidence 44555799999999999999965432211 11111 12356777776543 2 23344 4456788888988432211
Q ss_pred ------CCeeeeeccC--CCeeEEEecCC----CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433 264 ------KPVQSVVAHQ--SEVNCLAFNPF----NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 264 ------~~~~~~~~~~--~~v~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 331 (424)
..+.....|. .....+++-|. +..++++=+.||.+.+|+-+.. ....+-..---...+.+.+..+
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~tD- 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRTD- 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecCC-
Confidence 1122222232 23344444332 2457888999999999997651 1112111122223467777775
Q ss_pred EEEEEECCCeEEEeeCCC
Q 014433 332 ILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~ 349 (424)
.|++++.+..+.-|....
T Consensus 188 sfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQD 205 (418)
T ss_pred EEEEecCceeEEEecHHH
Confidence 577888888888887654
No 431
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=2.3 Score=40.17 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=49.4
Q ss_pred CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC-------CCCCeeeEEEcCCCCCcceEEeCCCC--CcE
Q 014433 319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE-------DGPPELLFIHGGHTSKISDFSWNPCE--DWV 389 (424)
Q Consensus 319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~ 389 (424)
.|..+..++.|. .++-.+.+|.+.++=.+..+....+.+.. -+-...+++... .-.+..++|+|+. .-.
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~-~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST-SLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC-ceeeeeccccCCccCCce
Confidence 578888999996 67777788855444323332222111110 000112222222 2247789999986 223
Q ss_pred EEEEeCCCcEEEEecCCc
Q 014433 390 ISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 390 l~s~~~dg~i~vw~~~~~ 407 (424)
+..-..|+.+++|+++..
T Consensus 183 L~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEEecCcEEEEEecCCc
Confidence 444567999999999864
No 432
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.56 E-value=9.7 Score=34.00 Aligned_cols=182 Identities=10% Similarity=0.149 Sum_probs=86.2
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-----CcEEEEEeCCCeEEEEEcCCCCCCCCeee--------
Q 014433 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTPSVSKPVQS-------- 268 (424)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~i~d~~~~~~~~~~~~-------- 268 (424)
.|.+||+.+++....+..........+.++++.+.... .+.+++=+..+.|.|+|+.+++..+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 34555655553322222111122245678888887633 34555666667899999998653111000
Q ss_pred --e------eccCCCeeEEEecC---CCCeEEEEEeCCCcEEEEE---CCCCCC--------cceEecCCCCCEEEEEEc
Q 014433 269 --V------VAHQSEVNCLAFNP---FNEWILATGSTDKTVKLFD---LRKIST--------ALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 269 --~------~~~~~~v~~v~~~~---~~~~~l~tg~~dg~i~iwd---~~~~~~--------~~~~~~~h~~~v~~~~~s 326 (424)
+ ......+..++.+| +++.+....-....++--. +++... .+..+.........++.+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 0 01122356666654 4543333322222222222 122110 112221112466788999
Q ss_pred CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC--CCCcEEEEE
Q 014433 327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP--CEDWVISSV 393 (424)
Q Consensus 327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~ 393 (424)
++| .++++--..+.|..|+....-.... ...+..-...-..+.++++.+ ++. |.+.+
T Consensus 195 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~~--------~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 195 PNG-NLYFTDVEQNAIGCWDPDGPYTPEN--------FEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp TTT-EEEEEECCCTEEEEEETTTSB-GCC--------EEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred CCC-cEEEecCCCCeEEEEeCCCCcCccc--------hheeEEcCceeeccceeeeccccCce-EEEEE
Confidence 988 4777888888999999876221110 122322222235677888888 776 45544
No 433
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.51 E-value=8.8 Score=33.42 Aligned_cols=197 Identities=13% Similarity=0.153 Sum_probs=105.2
Q ss_pred cEEEEEEeccCC--ceeEEEecCCCCcEEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433 115 KVQIIQQINHDG--EVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 115 ~~~~~~~~~h~~--~v~~~~~~p~~~~~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
.+++++.++|.. -...+.|..++. ++-+.+.-| .|+.+|+.+ ++......+. ..--.-+++.. +
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~t--------g~~~~~~~l~-~~~FgEGit~~--~ 99 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLET--------GKVLQSVPLP-PRYFGEGITIL--G 99 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTT--------SSEEEEEE-T-TT--EEEEEEE--T
T ss_pred eeEEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCC--------CcEEEEEECC-ccccceeEEEE--C
Confidence 467888888875 455688866664 666666655 788888877 1111111121 11122334443 2
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
..+....-.++...+||.++- +.+..+. ..+.=+.++ .++..++.| .....|+++|..+-+....+.. .
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl------~~~~~~~-y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V-~ 168 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTL------KKIGTFP-YPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQV-T 168 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTT------EEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE--E
T ss_pred CEEEEEEecCCeEEEEccccc------eEEEEEe-cCCcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEE-E
Confidence 335556677889999999754 3344443 345566776 456667644 4466789999876443222211 1
Q ss_pred ccC---CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---------------CCCCCEEEEEEcCCCCcE
Q 014433 271 AHQ---SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---------------SHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 271 ~~~---~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---------------~h~~~v~~~~~sp~~~~~ 332 (424)
... ..++-+.|- +| .+.|-.=....|...|..+ +..+..+. ....-.+.||+.|..+.+
T Consensus 169 ~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 169 DNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp ETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred ECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 112 234455554 23 3555555555666666666 44433321 113457999999998888
Q ss_pred EEEEE
Q 014433 333 LASCC 337 (424)
Q Consensus 333 l~s~~ 337 (424)
++||-
T Consensus 246 ~vTGK 250 (264)
T PF05096_consen 246 FVTGK 250 (264)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 88873
No 434
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.50 E-value=11 Score=32.82 Aligned_cols=203 Identities=8% Similarity=0.020 Sum_probs=109.0
Q ss_pred ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.-..++-.|+|. .-+++...|.|--.|..+++. ...--+....-..|..-|++..-| +-+.. .|.-.|-++
T Consensus 63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev------~~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt 133 (353)
T COG4257 63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEV------ETYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKT 133 (353)
T ss_pred CccccccCCCCc-eEEecCccccceecCCCCCce------EEEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcc
Confidence 345677778776 677777777777777776632 111122344556677788876444 32222 455566655
Q ss_pred CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-CCCEEEEEEcCCCCcEEEEEEC
Q 014433 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-KEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
.....................|++.|. +-.++. .|.---.|.. ...+..+... ...-..|+-.|+|+ +.++.-.
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa--~~~i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA--RNVISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc--cCceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 442111111122345678889999887 666765 2221111111 2233444332 33567889999996 5556555
Q ss_pred CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
+..|-..|...... +.+-...+.......+--+|.++ +-+|....+.+..+|.+....
T Consensus 209 gnaiaridp~~~~a------------ev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 209 GNAIARIDPFAGHA------------EVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred ccceEEcccccCCc------------ceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccc
Confidence 66666666655422 11111111112233444456666 556666666777777665543
No 435
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.44 E-value=5.1 Score=36.65 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=56.6
Q ss_pred ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce-eeeecCCccEeeEEEecC---CCcEEEEEeCC------
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM-QIFKVHEGVVEDVAWHLR---HEYLFGSVGDD------ 249 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~---~~~~~~s~~~d------ 249 (424)
..++|+|.|++. ++++...|.|++++.. +.....+..+ ............++++|+ +..++++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 357899999875 5556779999999932 2211111111 112234567899999994 34565555422
Q ss_pred --CeEEEEEcCCCCC-C---CCe-eeeec---cCCCeeEEEecCCCCeEEEEEeC
Q 014433 250 --QYLLIWDLRTPSV-S---KPV-QSVVA---HQSEVNCLAFNPFNEWILATGST 294 (424)
Q Consensus 250 --g~i~i~d~~~~~~-~---~~~-~~~~~---~~~~v~~v~~~~~~~~~l~tg~~ 294 (424)
..|.-|....... . +.+ ..... .......|+|.|++. |.++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 2344444433210 0 011 11111 234567799999996 5555443
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.38 E-value=6.3 Score=37.45 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=49.0
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--------Ccce---E-------ec-CCCCCEEEEEEcCCC--CcEE
Q 014433 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--------TALH---T-------FD-SHKEEVFQVGWNPKN--ETIL 333 (424)
Q Consensus 275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--------~~~~---~-------~~-~h~~~v~~~~~sp~~--~~~l 333 (424)
.|..+..++.|+ .++-.+.+|.+.++=.+..+ ++.. + |. ...-.+..++|+|+. +..|
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 467778888888 46666667765554322211 1110 0 11 112356789999987 5567
Q ss_pred EEEECCCeEEEeeCCCCCc
Q 014433 334 ASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~ 352 (424)
..-+.|..|+||++....+
T Consensus 184 ~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEecCcEEEEEecCCcch
Confidence 7888899999999987654
No 437
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.37 E-value=10 Score=32.18 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=78.8
Q ss_pred CccEeeEEEecCCCcEEEEEeC--------CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433 227 EGVVEDVAWHLRHEYLFGSVGD--------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 227 ~~~v~~~~~~~~~~~~~~s~~~--------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i 298 (424)
....++-..+|+|++...+-+. .|.++.|-.... +..+...-..-+.++|+.+.+.+..+-+.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-----VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC-----ceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 3466777788999863222111 234444433221 122222233456789998887777777777788
Q ss_pred EEEECC--CC----CCcceEecC----CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeE
Q 014433 299 KLFDLR--KI----STALHTFDS----HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368 (424)
Q Consensus 299 ~iwd~~--~~----~~~~~~~~~----h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 368 (424)
.-||.. +. .+.+..++. ..-..-.++....| .+.+++-..++|...|..++ .++.
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tG--------------K~L~ 247 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTG--------------KILL 247 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCC--------------cEEE
Confidence 778733 21 111222221 01112234445566 47777888889999999886 4444
Q ss_pred EEcCCCCCcceEEeCC
Q 014433 369 IHGGHTSKISDFSWNP 384 (424)
Q Consensus 369 ~~~~h~~~v~~~~~~~ 384 (424)
.+.-....|++++|--
T Consensus 248 eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 248 EIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEcCCCceEEEEecC
Confidence 4444567799999963
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.29 E-value=23 Score=36.14 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=50.8
Q ss_pred CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCC-C------CCcccceee------e-ecCCccEeeEEEecCC--Cc
Q 014433 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP-K------NKSLEAMQI------F-KVHEGVVEDVAWHLRH--EY 241 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~------~~~~~~~~~------~-~~~~~~v~~~~~~~~~--~~ 241 (424)
...|..|..+|.|. +|+..+..|.+.+.=.+... . ...+.+... + ..+...|..+.|+|.+ ..
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34788999999998 57777765544433222110 0 011111100 1 1244688999999974 23
Q ss_pred EEEEEeCCCeEEEEEcCCCCC
Q 014433 242 LFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~ 262 (424)
.|++-..|+++++||+.....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred eEEEEecCCEEEEEecCCCCC
Confidence 445778899999999976543
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.18 E-value=1.7 Score=25.06 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEECC--CeEEEe
Q 014433 315 SHKEEVFQVGWNPKNETILASCCLG--RRLMVW 345 (424)
Q Consensus 315 ~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iw 345 (424)
.....-....|+|+|+.++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999999888888877 776666
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.13 E-value=0.035 Score=51.29 Aligned_cols=147 Identities=10% Similarity=0.136 Sum_probs=97.2
Q ss_pred cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC
Q 014433 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308 (424)
Q Consensus 229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~ 308 (424)
..-...|-+.+.++ +.++.+..+..||-..... .. ...++....++|+.++..+++.+-..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~nl-avaca~tiv~~YD~agq~~----le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey- 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNL-AVACANTIVIYYDKAGQVI----LE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY- 108 (615)
T ss_pred ccceeeEecCCCce-ehhhhhhHHHhhhhhccee----cc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-
Confidence 33455678887775 4777788888898765332 11 12345567788988888777778888999999998632
Q ss_pred cceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433 309 ALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 309 ~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
...+.. -...-.-+.|++..+ .++.+...|.+.|++.... +.+.....|...++.++|.+.+.
T Consensus 109 -tqqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgts--------------R~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 109 -TQQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTS--------------RRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred -HHHHhccCcchHHHHhhccCCc-cccccccccceEEEeccch--------------hhhhhhcccccceeEEEecccce
Confidence 222221 112222378998876 5778888899999998764 22333344888899999999876
Q ss_pred cEEEEEeCCCcEE
Q 014433 388 WVISSVAEDNILQ 400 (424)
Q Consensus 388 ~~l~s~~~dg~i~ 400 (424)
.+.++.|..+.
T Consensus 173 --vil~dcd~~L~ 183 (615)
T KOG2247|consen 173 --VILCDCDNTLS 183 (615)
T ss_pred --eeecCcHHHHH
Confidence 44445555443
No 441
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=12 Score=39.85 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=29.9
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCC
Q 014433 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK 157 (424)
Q Consensus 119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~ 157 (424)
..+.+.+.....++|.|... ++|.|..+|.|++|-...
T Consensus 29 ~~~~G~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 29 TNRHGFPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred ceecCCCCCCcceeeccccc-eEEEEEecccEEEecccc
Confidence 33445556777899999764 999999999999998765
No 442
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.82 E-value=1.7 Score=25.09 Aligned_cols=29 Identities=10% Similarity=0.354 Sum_probs=22.3
Q ss_pred CCCcceEEeCCCCCcEEEEEeCC--CcEEEE
Q 014433 374 TSKISDFSWNPCEDWVISSVAED--NILQIW 402 (424)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~~~d--g~i~vw 402 (424)
...-....|+|+|++++.++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567789999999888888888 877777
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=89.66 E-value=16 Score=33.44 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=80.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEE-eCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVF-DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
.+.++++.+.|++. ++++| ..|.+..- +-.. ..+... ...-...++++.+.+++. .+++ +..|.+
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~gg--------~tW~~~--~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~ 237 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEPGQ--------TAWTPH--QRNSSRRLQSMGFQPDGN-LWML-ARGGQI 237 (334)
T ss_pred cceEEEEEECCCCe-EEEEe-CCceEEEEcCCCC--------CeEEEe--eCCCcccceeeeEcCCCC-EEEE-ecCCEE
Confidence 45688899998764 56554 45655432 2111 012111 122345788999999776 4444 456766
Q ss_pred EEEeCCCCCCCCcccceeee-ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433 204 CLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 282 (424)
.+=..+.+. .......- ......+.++.+.+++. ++ .++.+|.+. .....++....+.....-....+.+.|.
T Consensus 238 ~~~s~d~G~---sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 238 RFNDPDDLE---SWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred EEccCCCCC---ccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe
Confidence 532233221 11111100 01123578888988764 55 455677664 3444444322221111223457778877
Q ss_pred CCCCeEEEEEeCCCcEEEEE
Q 014433 283 PFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd 302 (424)
..+. .+++ +..|.|.-|+
T Consensus 312 ~~~~-~~~~-G~~G~il~~~ 329 (334)
T PRK13684 312 DPEK-GFVL-GQRGVLLRYV 329 (334)
T ss_pred CCCc-eEEE-CCCceEEEec
Confidence 6565 4554 5678887765
No 444
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.59 E-value=4.4 Score=33.04 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=25.3
Q ss_pred ceeEEEecCCC-----CceEEEEeCCCcEEEEeCCC
Q 014433 180 EGYGLSWSKFK-----EGHLLSGSDDAQICLWDINA 210 (424)
Q Consensus 180 ~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 210 (424)
.+.+++|||.| ..+|++...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999964 33688899999999998653
No 445
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.42 E-value=18 Score=33.53 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=73.7
Q ss_pred EEecCCCCceEEEEeCCCc--EEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433 184 LSWSKFKEGHLLSGSDDAQ--ICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 184 l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~ 260 (424)
=+|.++|..+|+++..||. +.+.|+.++. +..+.... .......++++++.++. ......|+-.|+++.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------i~QLTdg~g~~~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGE-------ITQLTDGPGDNTFGGFLSPDDRALYY-VKNGRSLRRVDLDTL 112 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------EEE---SS-B-TTT-EE-TTSSEEEE-EETTTEEEEEETTT-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCE-------EEECccCCCCCccceEEecCCCeEEE-EECCCeEEEEECCcC
Confidence 3577888877777777775 4555665542 22222222 22335667788876653 445578999999986
Q ss_pred CCCCCeeeeeccCCCeeEEEe--cCCCCeEEEEEeC-----------------------CCcEEEEECCCCCCcceEecC
Q 014433 261 SVSKPVQSVVAHQSEVNCLAF--NPFNEWILATGST-----------------------DKTVKLFDLRKISTALHTFDS 315 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~v~~--~~~~~~~l~tg~~-----------------------dg~i~iwd~~~~~~~~~~~~~ 315 (424)
+. ...+......+-...| +.++.. + +|.. ...|.-.|+++ ++.. .+..
T Consensus 113 e~---~~vy~~p~~~~g~gt~v~n~d~t~-~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-G~~~-~v~~ 185 (386)
T PF14583_consen 113 EE---RVVYEVPDDWKGYGTWVANSDCTK-L-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-GERK-VVFE 185 (386)
T ss_dssp -E---EEEEE--TTEEEEEEEEE-TTSSE-E-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EE-EEEE
T ss_pred cE---EEEEECCcccccccceeeCCCccE-E-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-Ccee-EEEe
Confidence 63 2223333444434444 333442 2 2211 12344456655 3332 2222
Q ss_pred CCCCEEEEEEcCCCCcEEEEEEC---CCe-EEEeeCCCC
Q 014433 316 HKEEVFQVGWNPKNETILASCCL---GRR-LMVWDLSRI 350 (424)
Q Consensus 316 h~~~v~~~~~sp~~~~~l~s~~~---dg~-i~iwd~~~~ 350 (424)
-...+.-+.|+|..+.+|+-|-. +.. -+||-++..
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 35678899999998887777654 221 367766643
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.98 E-value=8.8 Score=29.46 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=67.8
Q ss_pred eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC----CCceEEEEeCCCcEE
Q 014433 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLSGSDDAQIC 204 (424)
Q Consensus 129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~ 204 (424)
..-+|....+ .|++++..|.|.|++.......... ....+ .+-.-...|++|+--+- +...|+.|+. ..+.
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt~-t~ll 76 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR--QDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLL 76 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc--ccCce-eEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEE
Confidence 3456777677 5777888999999998763222210 11222 33346677888865442 3345666665 6889
Q ss_pred EEeCCCCCCCCcccceeeeecCCccEeeEEEecC---CCcEEEEEeCCCeEEEEEcCC
Q 014433 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---HEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.||+....... ++.-.+.|+++.+-.- ...++ ..+.+..|.-||...
T Consensus 77 aYDV~~N~d~F-------yke~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 77 AYDVENNSDLF-------YKEVPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYEG 126 (136)
T ss_pred EEEcccCchhh-------hhhCccceeEEEEEecCCCCCcEE-EECceEEEEEeCCCC
Confidence 99998764311 2223466777766322 12233 344456666666544
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.74 E-value=4.4 Score=37.72 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=86.6
Q ss_pred ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccCC----Cee-EEEecCCCCeEEEEEeCCCc
Q 014433 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQS----EVN-CLAFNPFNEWILATGSTDKT 297 (424)
Q Consensus 224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~----~v~-~v~~~~~~~~~l~tg~~dg~ 297 (424)
......|..+-..|+++.+.+-.+ ..+.++++.+.... ...+ ....+ .|+ ++..-. |..-+.+++.||-
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~--~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQ--IRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccc--hhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCc
Confidence 334567788889999987764433 67888888764421 1111 11111 122 111112 3335777888888
Q ss_pred EEEE-ECCCCCCc----ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC
Q 014433 298 VKLF-DLRKISTA----LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG 372 (424)
Q Consensus 298 i~iw-d~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (424)
|.-| |.|..+.+ ++.++....++.-+.-..+. .-+++-...|++.++.....+ .+++..
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~-------------~lL~~~-- 355 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEK-------------LLLFER-- 355 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCc-------------ceehhh--
Confidence 7765 77764433 11222222333333222222 346677777777776544321 122211
Q ss_pred CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433 373 HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 373 h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 407 (424)
--..+.-++++|.+.+ +++ -..|.++++.+++.
T Consensus 356 ~~~~~~~~~~Sp~~~~-Ll~-e~~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAY-LLS-EDQGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccch-hee-ecCCceEEEEecCC
Confidence 1224667899999986 444 34677999988765
No 448
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.62 E-value=26 Score=34.46 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCCCCCeeeeeccC-------CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcc
Q 014433 251 YLLIWDLRTPSVSKPVQSVVAHQ-------SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTAL 310 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~ 310 (424)
.|.-.|+++++..-..+. ..|. ....-+....+|+ .+++.+..+|.++++|.++ ++++
T Consensus 272 s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t-G~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN-GKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC-Ccee
Confidence 577778888774221111 1121 1112222323454 5788999999999999987 5553
No 449
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.21 E-value=35 Score=35.41 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=99.0
Q ss_pred ceeEEEecCCCCceEEEEe----------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433 180 EGYGLSWSKFKEGHLLSGS----------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d 249 (424)
.+.++.|..+...++++|. ..|.|.++.+... ..++.+.... -.+.+.++..- +..++ ++-+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~---~~L~~v~e~~-v~Gav~aL~~f--ngkll--A~In 847 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL---NSLELVAETV-VKGAVYALVEF--NGKLL--AGIN 847 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC---Cceeeeeeee-eccceeehhhh--CCeEE--EecC
Confidence 3555668777455677764 2578888887763 2222222222 23455555433 23354 3456
Q ss_pred CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc--eEecCCCCCEEEEEEcC
Q 014433 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL--HTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~~h~~~v~~~~~sp 327 (424)
..|++|+..+.+. ++.-..+..++..+...-.+. .+++|..-+++.+.-.+...... .....+...++++.+-.
T Consensus 848 ~~vrLye~t~~~e---Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 848 QSVRLYEWTTERE---LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD 923 (1096)
T ss_pred cEEEEEEccccce---ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence 7899999988643 444456778888888888787 58899988888887766533222 22235677888888877
Q ss_pred CCCcEEEEEECCCeEEEeeCCC
Q 014433 328 KNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 328 ~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+. .++.+..+|.+.+-...+
T Consensus 924 ~d--~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 924 DD--TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred Cc--eEEeecccccEEEEEecC
Confidence 65 355666778787776654
No 450
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=8.9 Score=40.71 Aligned_cols=156 Identities=11% Similarity=0.170 Sum_probs=88.1
Q ss_pred EEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE--------ecCCCCeEEEEEeCCCcEEEEECCCCC--Cc-----
Q 014433 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA--------FNPFNEWILATGSTDKTVKLFDLRKIS--TA----- 309 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~----- 309 (424)
-.+.|..+.+|+..++.. ...+.+-...|..|. |.|.=+++|+.+.. -.|.++-+.... ..
T Consensus 94 WiTiDn~L~lWny~~~~e---~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNE---LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred EEEeCCeEEEEEcCCCCc---cccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccc
Confidence 345789999999998554 344444444555543 33334455555543 345555432110 01
Q ss_pred -ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc-------CCCC----cCCCCCeeeEEEcCCCCCc
Q 014433 310 -LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ-------TPED----AEDGPPELLFIHGGHTSKI 377 (424)
Q Consensus 310 -~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~----~~~~~~~~~~~~~~h~~~v 377 (424)
..++...+..|+++....+|+ ++.+| .|| .||.+.-..... .... ...--+.++.....+..+|
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI 245 (1311)
T ss_pred cceeeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence 122223356789999778885 56554 555 556553221110 0000 0000112222224677799
Q ss_pred ceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 378 SDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 378 ~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
..+....... ++.+-++.|+|++|++..+..
T Consensus 246 ~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 246 RQITIDNSRN-ILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred eeeEeccccc-eeeeeccCceEEEEEccCCCc
Confidence 9999987766 899999999999999988543
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.68 E-value=7.8 Score=41.09 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=80.0
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEE--------EecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe---
Q 014433 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA--------WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV--- 266 (424)
Q Consensus 198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~--- 266 (424)
+.|..+.+|+.+++.... .+.+-...|..+. |-|.=+++++.+ .--.|.++-+.-.......
T Consensus 96 TiDn~L~lWny~~~~e~~------~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELA------EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCccc------cccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCccccc
Confidence 457889999999854322 1222233333332 223334455333 3345555544322111001
Q ss_pred ---eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC----------C-------------CcceEec-CCCCC
Q 014433 267 ---QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI----------S-------------TALHTFD-SHKEE 319 (424)
Q Consensus 267 ---~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~----------~-------------~~~~~~~-~h~~~ 319 (424)
..+......|+|+....+|+ +|.+| .|| .+|.+.-. . ..+..+. .+..+
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 11223356789999777776 56555 566 45543210 0 0122233 56779
Q ss_pred EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433 320 VFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|..++..... .++.+-+..|+|.+|++....
T Consensus 245 I~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 245 IRQITIDNSR-NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ceeeEecccc-ceeeeeccCceEEEEEccCCC
Confidence 9999998766 589999999999999998743
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.61 E-value=2.5 Score=24.63 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceEecC
Q 014433 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDS 315 (424)
Q Consensus 283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~ 315 (424)
|++++++++...+++|.++|..+ ...+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 56777777777789999999976 555555554
No 453
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.33 E-value=40 Score=35.05 Aligned_cols=142 Identities=12% Similarity=0.162 Sum_probs=84.2
Q ss_pred CCeEEEEEcCCCCCCCCeeeeecc--CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s 326 (424)
.|.|.||.....+. +.....+ ++.+.++.- .+..++| +-...|++|++.+ .+.++.-..|..++..+...
T Consensus 806 ~GRIivfe~~e~~~---L~~v~e~~v~Gav~aL~~--fngkllA--~In~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~ 877 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNS---LELVAETVVKGAVYALVE--FNGKLLA--GINQSVRLYEWTT-ERELRIECNISNPIIALDLQ 877 (1096)
T ss_pred cceEEEEEEecCCc---eeeeeeeeeccceeehhh--hCCeEEE--ecCcEEEEEEccc-cceehhhhcccCCeEEEEEE
Confidence 45666666655222 2222122 334444432 2332343 3467899999987 55667777788899999998
Q ss_pred CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee-EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL-FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
-.++ .++.|..-+++.+-..+.... ... ..-.-+..+++.+.+-.+.. ++.+-.+|.+.+-...
T Consensus 878 v~gd-eI~VgDlm~Sitll~y~~~eg------------~f~evArD~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 878 VKGD-EIAVGDLMRSITLLQYKGDEG------------NFEEVARDYNPNWMTAVEILDDDT--YLGAENSGNLFTVRKD 942 (1096)
T ss_pred ecCc-EEEEeeccceEEEEEEeccCC------------ceEEeehhhCccceeeEEEecCce--EEeecccccEEEEEec
Confidence 8886 688888877777766554321 111 11223556777888776665 3344567778777776
Q ss_pred CccCCCCC
Q 014433 406 ENIYHDED 413 (424)
Q Consensus 406 ~~~~~~~~ 413 (424)
+..-.+++
T Consensus 943 ~~~~td~e 950 (1096)
T KOG1897|consen 943 SDATTDEE 950 (1096)
T ss_pred CCCCchhh
Confidence 55444333
No 454
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.28 E-value=41 Score=35.21 Aligned_cols=139 Identities=10% Similarity=0.182 Sum_probs=73.5
Q ss_pred CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEc
Q 014433 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWN 326 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~s 326 (424)
+|.++.|++-.... .+.-+....-+-.-.+.+|...++| +| ....+++||+-+ +++++.... -...|+++.+.
T Consensus 911 ~g~~ytyk~~~~g~--~lellh~T~~~~~v~Ai~~f~~~~L-ag-vG~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGD--KLELLHKTEIPGPVGAICPFQGRVL-AG-VGRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTY 985 (1205)
T ss_pred CCceEEEEEEecCc--eeeeeeccCCCccceEEeccCCEEE-Ee-cccEEEEeeCCh-HHHHhhhhhccCceEEEEEeec
Confidence 45577776644332 1222211122222345567676544 33 356899999987 555444332 24567888876
Q ss_pred CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee-EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL-FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
-. .++.|..-..+.++..+.... +++ +.-..-...|+.+.+-..+. ++.+..=|.+.+-++.
T Consensus 986 ~~---RI~VgD~qeSV~~~~y~~~~n------------~l~~fadD~~pR~Vt~~~~lD~~t--vagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 986 GA---RIVVGDIQESVHFVRYRREDN------------QLIVFADDPVPRHVTALELLDYDT--VAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ce---EEEEeeccceEEEEEEecCCC------------eEEEEeCCCccceeeEEEEecCCc--eeeccccCcEEEEECC
Confidence 43 355555444466555544221 222 22222234567666655554 6666777777777776
Q ss_pred CccC
Q 014433 406 ENIY 409 (424)
Q Consensus 406 ~~~~ 409 (424)
....
T Consensus 1049 ~d~~ 1052 (1205)
T KOG1898|consen 1049 PDVS 1052 (1205)
T ss_pred Ccch
Confidence 5543
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.87 E-value=42 Score=34.86 Aligned_cols=172 Identities=10% Similarity=0.094 Sum_probs=98.2
Q ss_pred cCCCceeEEEec---CC--CCceEEEEeCCCcEEEEeCCCCCC-------C--Ccccceeeee---cCCccEeeEEEecC
Q 014433 176 GHSTEGYGLSWS---KF--KEGHLLSGSDDAQICLWDINAAPK-------N--KSLEAMQIFK---VHEGVVEDVAWHLR 238 (424)
Q Consensus 176 ~h~~~v~~l~~~---~~--~~~~l~s~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~~---~~~~~v~~~~~~~~ 238 (424)
.-..+|..|+|. .. ....++..-....+.|+...-... . -...++..+. ....+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 466789999987 21 121244445556777887322211 0 1112222222 12357889999998
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCC--CCCCeeeeeccC----------CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433 239 HEYLFGSVGDDQYLLIWDLRTPS--VSKPVQSVVAHQ----------SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI 306 (424)
Q Consensus 239 ~~~~~~s~~~dg~i~i~d~~~~~--~~~~~~~~~~~~----------~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~ 306 (424)
....||.....|...|||+.... ....+.....+. +.-..|.|.++...+| ..+ ...+.++|+.+.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence 88889999999999999992111 111111111111 2234778877766544 433 467999999874
Q ss_pred CCcc-eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 307 STAL-HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 307 ~~~~-~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
...- .........|..+.-+|.....++.-. ...|...++...
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 3311 122234568999999887433232222 245777777763
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.63 E-value=18 Score=30.39 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=61.7
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC---C---cEEEE---eCCC
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---A---QICLW---DINA 210 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g---~i~iw---d~~~ 210 (424)
++++ .....|.+|++.. ....+..++. .-+.|..+.++..|. +|++--.+ . .+|+| +...
T Consensus 31 Lfva-~~g~~Vev~~l~~--------~~~~~~~~F~-Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 31 LFVA-ASGCKVEVYDLEQ--------EECPLLCTFS-TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred EEEE-cCCCEEEEEEccc--------CCCceeEEEc-chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhc
Confidence 4343 5567899999985 2345555555 447899999999888 78874322 1 45554 3221
Q ss_pred CCCC----------------Cccc-ceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433 211 APKN----------------KSLE-AMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 211 ~~~~----------------~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.... .... .+.... .-..++.+++..|...+++ .| .++.+.+|.++.
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg-~~~~l~lf~l~~ 164 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VG-CGNKLVLFTLKY 164 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EE-cCCEEEEEEEEE
Confidence 1000 0000 011111 1234677888888777776 33 357888888764
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.52 E-value=4.7 Score=34.32 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=46.3
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE------ec-------CCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT------FD-------SHKEEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~------~~-------~h~~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
.++..+.. .+.+ |++-+.+|.+++||+.+....+.. +. .....|..+..+.+|- -+++-+ +|
T Consensus 13 s~~~~l~~--~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng 87 (219)
T PF07569_consen 13 SPVSFLEC--NGSY-LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NG 87 (219)
T ss_pred CceEEEEe--CCCE-EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CC
Confidence 34444443 4664 667788999999999984322111 11 3456789999998885 344443 57
Q ss_pred eEEEeeCCC
Q 014433 341 RLMVWDLSR 349 (424)
Q Consensus 341 ~i~iwd~~~ 349 (424)
..+.|+..-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 788888764
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=86.50 E-value=26 Score=32.12 Aligned_cols=155 Identities=8% Similarity=-0.037 Sum_probs=80.7
Q ss_pred CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEc
Q 014433 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~ 257 (424)
...+.++.+.|++. ++..+..|.+..- .+.+. .++..+ ...-...++++.+.+++. ++++ +..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg--~tW~~~--~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQ--TAWTPH--QRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCC--CeEEEe--eCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccC
Confidence 45678889888664 4444555655431 11111 112111 112346788999999876 4434 45676653234
Q ss_pred CCCCCCCCeeee-eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCCcEE
Q 014433 258 RTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l 333 (424)
..+.....+... ......+..+.+.+++. ++++ +.+|.+.. .... ++.-.... .-......+.|..++. .+
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~-G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAG-GGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEK-GF 317 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCC-EEEE-cCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCCc-eE
Confidence 444332222111 01224578899998776 4544 45675543 3222 33322222 1123577788876664 44
Q ss_pred EEEECCCeEEEeeC
Q 014433 334 ASCCLGRRLMVWDL 347 (424)
Q Consensus 334 ~s~~~dg~i~iwd~ 347 (424)
..+..|.|.-|+-
T Consensus 318 -~~G~~G~il~~~~ 330 (334)
T PRK13684 318 -VLGQRGVLLRYVG 330 (334)
T ss_pred -EECCCceEEEecC
Confidence 4566777776653
No 459
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.31 E-value=22 Score=31.06 Aligned_cols=161 Identities=13% Similarity=0.152 Sum_probs=79.7
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
+++.....+...----.++... +. +...-=.++...+||..+ .+.+.++. ..++.++|+. ++. .
T Consensus 78 g~~~~~~~l~~~~FgEGit~~~-d~-l~qLTWk~~~~f~yd~~t----------l~~~~~~~-y~~EGWGLt~--dg~-~ 141 (264)
T PF05096_consen 78 GKVLQSVPLPPRYFGEGITILG-DK-LYQLTWKEGTGFVYDPNT----------LKKIGTFP-YPGEGWGLTS--DGK-R 141 (264)
T ss_dssp SSEEEEEE-TTT--EEEEEEET-TE-EEEEESSSSEEEEEETTT----------TEEEEEEE--SSS--EEEE--CSS-C
T ss_pred CcEEEEEECCccccceeEEEEC-CE-EEEEEecCCeEEEEcccc----------ceEEEEEe-cCCcceEEEc--CCC-E
Confidence 3444334444333333344443 22 444445678999999987 44455554 4567888883 455 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-----e
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-----S 268 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-----~ 268 (424)
|+.+.....+..+|..+-+....+... .-...-..++.+.|- + ..+.|=.=....|...|..++.+...+- .
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~-G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~ 218 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-N-GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRP 218 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-T-TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-c-CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhh
Confidence 666666678999998765432222110 000011245556665 2 2355444455566666666655311000 0
Q ss_pred -------eeccCCCeeEEEecCCCCeEEEEEe
Q 014433 269 -------VVAHQSEVNCLAFNPFNEWILATGS 293 (424)
Q Consensus 269 -------~~~~~~~v~~v~~~~~~~~~l~tg~ 293 (424)
......-.+.||++|....+++||=
T Consensus 219 ~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 219 EVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp HHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 0011345789999999988888874
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.16 E-value=3.7 Score=34.95 Aligned_cols=68 Identities=4% Similarity=0.047 Sum_probs=43.5
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCCCCCcc-cceeeee-------cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433 189 FKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFK-------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 189 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.+. +|++-..+|.+++||+.+.+..-.. .....+. .....|..+.++.+|. .+++- .+|..+.|+..-
T Consensus 21 ~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred CCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEE-eCCCEEEecccc
Confidence 355 7888899999999999987543221 1111111 3456788888887765 34343 457788887764
No 461
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.84 E-value=25 Score=31.31 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=112.6
Q ss_pred ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC-cccceeeeec-----CCccEeeEEEecCCC-----------cE
Q 014433 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-SLEAMQIFKV-----HEGVVEDVAWHLRHE-----------YL 242 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~-----~~~~v~~~~~~~~~~-----------~~ 242 (424)
..+.|+++|.+. +.++...-+...+||........ ....+..+.. .....+.+.|+.... ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 458899999776 67777778899999997221110 0011111111 224567777764432 22
Q ss_pred EEEEeCCCeEEEEEcCCCCCC--CCeeeeec-cCCCee-EEEe--cCCCCeEEEEEeCCCcEEEEECCCCCCcc--eEec
Q 014433 243 FGSVGDDQYLLIWDLRTPSVS--KPVQSVVA-HQSEVN-CLAF--NPFNEWILATGSTDKTVKLFDLRKISTAL--HTFD 314 (424)
Q Consensus 243 ~~s~~~dg~i~i~d~~~~~~~--~~~~~~~~-~~~~v~-~v~~--~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~ 314 (424)
|+.+++||+|.-|...-.... .....+.. ....|+ -+++ ...+.+|.++-...++|.+||-.- .++. ..+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCcc
Confidence 456789999999985433210 11222221 123332 2333 344566777777889999998653 1110 0111
Q ss_pred CCC----------------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE--cCCCCC
Q 014433 315 SHK----------------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH--GGHTSK 376 (424)
Q Consensus 315 ~h~----------------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~ 376 (424)
... --|+-..-.+... -=+.+..-|.|-+||+.- .+++.+ .+.-..
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~G---------------~l~~r~as~g~LNa 245 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLNG---------------QLLRRVASSGRLNA 245 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCCC---------------cEEEEeccCCcccC
Confidence 100 0011111112111 112223345777887764 444433 333445
Q ss_pred cceEEeCC------CCCcEEEEEeCCCcEEEEecCCccCC
Q 014433 377 ISDFSWNP------CEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 377 v~~~~~~~------~~~~~l~s~~~dg~i~vw~~~~~~~~ 410 (424)
-+.++..| .+. +|+.-=.||+|..+|..++.+.
T Consensus 246 PWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCcee
Confidence 66777755 355 6665557999999999877643
No 462
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.44 E-value=32 Score=31.38 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=108.8
Q ss_pred CceeEEEecCCCCceEEEEeCCCc------EEEEeCCCCC-CCCcccce--eeeecCC--------ccEeeEEEecCCCc
Q 014433 179 TEGYGLSWSKFKEGHLLSGSDDAQ------ICLWDINAAP-KNKSLEAM--QIFKVHE--------GVVEDVAWHLRHEY 241 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~------i~iwd~~~~~-~~~~~~~~--~~~~~~~--------~~v~~~~~~~~~~~ 241 (424)
+.+.+|.+.+.+. .+++.+.+|. +...++.... ....+... ..+..-. ....+|++.+++.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 4567889987555 5777777777 6666655411 11111111 1111111 1455788866654
Q ss_pred EEEEEeCC------CeEEEEEcCCCCCCCCee------------eeeccCCCeeEEEecCCCCeEEEEEeC-----CC--
Q 014433 242 LFGSVGDD------QYLLIWDLRTPSVSKPVQ------------SVVAHQSEVNCLAFNPFNEWILATGST-----DK-- 296 (424)
Q Consensus 242 ~~~s~~~d------g~i~i~d~~~~~~~~~~~------------~~~~~~~~v~~v~~~~~~~~~l~tg~~-----dg-- 296 (424)
++++.-.+ ..|..++.. +.....+. .-.......-+|+++|+|..++++ .. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~-~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA-MESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE-ECccccCCCcc
Confidence 55455455 678888866 33221110 111234578899999999854433 22 22
Q ss_pred c-------EEE--EECCCCCCcceE----ecC-----CCCCEEEEEEcCCCCcEEEEE-E----CCCeEEEeeCCCCCc-
Q 014433 297 T-------VKL--FDLRKISTALHT----FDS-----HKEEVFQVGWNPKNETILASC-C----LGRRLMVWDLSRIDE- 352 (424)
Q Consensus 297 ~-------i~i--wd~~~~~~~~~~----~~~-----h~~~v~~~~~sp~~~~~l~s~-~----~dg~i~iwd~~~~~~- 352 (424)
. +++ ||..+.+.+... +.. ....|+.+.+-++++ +|+.= + ....++|+.+.....
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~at 254 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSDAT 254 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEccccc
Confidence 1 444 454442323222 222 356789999999996 44332 2 234566665543221
Q ss_pred -ccCCCCcC-----CCCCeeeEEEcC---CCCCcceEEeCC--CCCcEEEEEeCCCc
Q 014433 353 -EQTPEDAE-----DGPPELLFIHGG---HTSKISDFSWNP--CEDWVISSVAEDNI 398 (424)
Q Consensus 353 -~~~~~~~~-----~~~~~~~~~~~~---h~~~v~~~~~~~--~~~~~l~s~~~dg~ 398 (424)
........ .....+++.+.. ....+-.++|.| ++...|+..++|+.
T Consensus 255 ~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 255 DVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred ccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 11110000 111223322222 144578899976 56655666676664
No 463
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.06 E-value=30 Score=30.64 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=96.9
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
..++..+.-++-+..++++.+ ++..+..+.-++|.|+.+..+.. ....+. ..+--+++.. .|. +..
T Consensus 77 ~~l~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~-------~~~~ln-t~gyaygv~v--sGn-~aY 142 (370)
T COG5276 77 DVLLSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPT-------LIGFLN-TDGYAYGVYV--SGN-YAY 142 (370)
T ss_pred cceEEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcc-------eecccc-CCceEEEEEe--cCC-EEE
Confidence 345566777888888999863 34445666779999998742221 111111 1122233333 365 677
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
.+..|.-+.+.|+.+.+.. . ....+......-..++.+ |++-+ .+..|+-+.+.|+..+.....+.... ....
T Consensus 143 VadlddgfLivdvsdpssP-~--lagrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n-~g~g 215 (370)
T COG5276 143 VADLDDGFLIVDVSDPSSP-Q--LAGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYN-TGPG 215 (370)
T ss_pred EeeccCcEEEEECCCCCCc-e--eeeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEe-cCCc
Confidence 7876667778899876442 1 112223333444666666 44444 55678889999999877533333222 2336
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014433 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKIS 307 (424)
Q Consensus 276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~ 307 (424)
+.++..+++.. +++.. +--+.+-|...+.
T Consensus 216 ~~sv~vsdnr~-y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 216 TYSVSVSDNRA-YLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred eEEEEecCCee-EEEEc--ccceEEEecCCCC
Confidence 78888887554 23332 3346666666543
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.84 E-value=5.4 Score=23.15 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=20.2
Q ss_pred cCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433 237 LRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 237 ~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
|+++.++++...++.|.++|..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 5677788888789999999997654
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.47 E-value=7.1 Score=38.62 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=25.3
Q ss_pred CCEEEEEEcC---CCCcEEEEEECCCeEEEeeCCCCCc
Q 014433 318 EEVFQVGWNP---KNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 318 ~~v~~~~~sp---~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
..+..++.++ ++..+|++.+.|+.+|+||+.++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3456666666 2445899999999999999999876
No 466
>PLN02193 nitrile-specifier protein
Probab=82.30 E-value=50 Score=31.98 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=31.1
Q ss_pred CcEEEEEeCCC-----eEEEEEcCCCCCCCCeee---eeccCCCeeEEEecCCCCeEEEEEeCC----CcEEEEECCC
Q 014433 240 EYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQS---VVAHQSEVNCLAFNPFNEWILATGSTD----KTVKLFDLRK 305 (424)
Q Consensus 240 ~~~~~s~~~dg-----~i~i~d~~~~~~~~~~~~---~~~~~~~v~~v~~~~~~~~~l~tg~~d----g~i~iwd~~~ 305 (424)
..+++.|+.++ .+..||+.+..- ..+.. ..........+.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~~~~~~~--~gk-iyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGGAGLEVV--QGK-VWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCCcEEEEE--CCc-EEEEECCCCCccCceEEEECCC
Confidence 45777777543 467788776441 11110 0011111112222 244 66777655 4588999876
No 467
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.98 E-value=37 Score=30.20 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=65.1
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe------CCCeEEEEEcCCCCCCCCeeeeec--
Q 014433 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVA-- 271 (424)
Q Consensus 200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~------~dg~i~i~d~~~~~~~~~~~~~~~-- 271 (424)
-..|++||....+-. ..-.+-.+.|+++.|..+ ..++++|. ....+..||..+.. ...+..
T Consensus 15 C~~lC~yd~~~~qW~------~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~----w~~~~~~~ 83 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWS------SPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQT----WSSLGGGS 83 (281)
T ss_pred CCEEEEEECCCCEee------cCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCe----eeecCCcc
Confidence 346999998765321 111224678999999855 45776664 45668889988755 222222
Q ss_pred ---cCCCeeEEEecC-CCCeEEEEEe-CCC--cEEEEECCCCCCcceE-ecCCCCCEEEEEEcC
Q 014433 272 ---HQSEVNCLAFNP-FNEWILATGS-TDK--TVKLFDLRKISTALHT-FDSHKEEVFQVGWNP 327 (424)
Q Consensus 272 ---~~~~v~~v~~~~-~~~~~l~tg~-~dg--~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~sp 327 (424)
-.++|+.+.+.. ++..+.+.|. .+| .|..||=.+. ..+.. .......|..+.+-|
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W-~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW-SSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce-EeccccccCCCCEEEEEEEEe
Confidence 247788887743 3334555554 333 4667765542 22222 222244566655543
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.70 E-value=30 Score=29.07 Aligned_cols=105 Identities=16% Similarity=0.302 Sum_probs=62.5
Q ss_pred CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-C--C---cEEEE-ECCC---CCCc
Q 014433 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-D--K---TVKLF-DLRK---ISTA 309 (424)
Q Consensus 240 ~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-d--g---~i~iw-d~~~---~~~~ 309 (424)
+.+|++ .....|.+|++.... ..++..+.. -+.|..+.++..|.+ ++|--. . . .+++| +.|. ...+
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~-~~~~~~F~T-v~~V~~l~y~~~GDY-lvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEE-CPLLCTFST-VGRVLQLVYSEAGDY-LVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCC-CceeEEEcc-hhheeEEEeccccce-EEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 456544 556789999999444 345555544 478999999999996 555322 1 1 45665 2221 1122
Q ss_pred ce-EecC---------------------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433 310 LH-TFDS---------------------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 310 ~~-~~~~---------------------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+. .+-+ -+.++.+++..|-...++ .|+ ++.+.||.+...
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 22 1112 134677888888665644 444 456999988764
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.65 E-value=55 Score=31.38 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=36.8
Q ss_pred CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCC
Q 014433 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRH 239 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 239 (424)
.-...+.|+|.|++. +|++--..|.|++++................. ........|+++|+-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345578999999885 45544436999999865432211111011111 135678999999873
No 470
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.03 E-value=71 Score=32.27 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=34.1
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
-.|+|++..... +....-....+-.+.|+.+.. ++ +...+|++++|++-...
T Consensus 64 ~~I~If~~sG~l-------L~~~~w~~~~lI~mgWs~~ee-LI-~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNISGQL-------LGRILWKHGELIGMGWSDDEE-LI-CVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEeccccc-------hHHHHhcCCCeeeecccCCce-EE-EEeccceEEEeecchhh
Confidence 457788775331 111111233788999998764 44 67899999999986543
No 471
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=79.24 E-value=84 Score=32.62 Aligned_cols=204 Identities=10% Similarity=0.093 Sum_probs=106.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCccc--ceeeeecCCccEeeEEEe--cCCCcEEEEEeC--CCeEEEEEcCCCCC-----
Q 014433 194 LLSGSDDAQICLWDINAAPKNKSLE--AMQIFKVHEGVVEDVAWH--LRHEYLFGSVGD--DQYLLIWDLRTPSV----- 262 (424)
Q Consensus 194 l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~--~~~~~~~~s~~~--dg~i~i~d~~~~~~----- 262 (424)
+++-...|.+++|=.+......... .+..+..-...++..++. ..|..+++++.. .+.|++|.+.-.-.
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 6666778999998763332211111 001111223455555544 555556555443 58888886532110
Q ss_pred CC----Ceeee-ec--------------------cCCCeeEEEecC------CCCeEEEEEeC----CCcEEEEECCCCC
Q 014433 263 SK----PVQSV-VA--------------------HQSEVNCLAFNP------FNEWILATGST----DKTVKLFDLRKIS 307 (424)
Q Consensus 263 ~~----~~~~~-~~--------------------~~~~v~~v~~~~------~~~~~l~tg~~----dg~i~iwd~~~~~ 307 (424)
.. |...+ .. .-..++.+.|-+ ....++++.+. ...|.-|.++...
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence 00 11111 00 112455666644 23345555443 3479999988643
Q ss_pred CcceEec-------------------------CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC----CC
Q 014433 308 TALHTFD-------------------------SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP----ED 358 (424)
Q Consensus 308 ~~~~~~~-------------------------~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~ 358 (424)
..++... .....|.++.-...+ .+++.+-.||+|.++|-.+....... ..
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 3322211 012456677766666 47889999999999999887554333 10
Q ss_pred cC--CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433 359 AE--DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 359 ~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 400 (424)
.. ......-+.+. +...+..++|||.+. .++.-..+|.+.
T Consensus 304 ~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~c-~~v~~~~~~~~~ 345 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFP-CIQPPLHVAFSPTMC-SLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccccc-cCCCCceEEECcccc-eEEEEecCCCce
Confidence 00 00011112221 122456799999998 677778888866
No 472
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.07 E-value=69 Score=31.57 Aligned_cols=67 Identities=16% Similarity=0.049 Sum_probs=37.7
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc-----cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG-----VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
.++.++.++.|.-.|..+++................ .-..+++. +..++ .++.|+.|.-+|.++++.
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~-v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVF-FGTLDARLVALDAKTGKV 142 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEE-EEcCCCEEEEEECCCCCE
Confidence 577777788888888888765433321100000000 00112222 23344 677899999999998875
No 473
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=78.70 E-value=94 Score=33.35 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
...|++.+..-...|+|.+++=.. | .|++|. ...|.||+++.. ....++. +. .-+++-.....-++
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV~-G--~l~~~~-GqKI~v~~l~r~-------~~ligVa-Fi--D~~~yv~s~~~vkn 1149 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEVR-G--HLLSSQ-GQKIIVRKLDRD-------SELIGVA-FI--DLPLYVHSMKVVKN 1149 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEec-c--EEEEcc-CcEEEEEEeccC-------CcceeeE-Ee--ccceeEEehhhhhh
Confidence 345777777777889999887653 4 466543 458999999651 1111111 11 11222222222233
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcE-EEEEeCCCeEEEEEcC
Q 014433 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLR 258 (424)
Q Consensus 192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~s~~~dg~i~i~d~~ 258 (424)
+|+.|.--..|.+.-...... .+..+. -....-.+.++.|.-+|.++ |+++..++.|++|--.
T Consensus 1150 -lIl~gDV~ksisfl~fqeep~--rlsL~s-rd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1150 -LILAGDVMKSISFLGFQEEPY--RLSLLS-RDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred -heehhhhhhceEEEEEccCce--EEEEee-cCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 667776666666665543311 111100 01122357778887777665 6677789998887543
No 474
>PLN02153 epithiospecifier protein
Probab=78.57 E-value=54 Score=30.07 Aligned_cols=22 Identities=5% Similarity=0.096 Sum_probs=14.1
Q ss_pred CcEEEEEeCC-----------CeEEEEEcCCCC
Q 014433 240 EYLFGSVGDD-----------QYLLIWDLRTPS 261 (424)
Q Consensus 240 ~~~~~s~~~d-----------g~i~i~d~~~~~ 261 (424)
..+++.|+.+ ..+.+||+.+..
T Consensus 138 ~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 138 NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 3466677653 247788987654
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.13 E-value=91 Score=32.45 Aligned_cols=178 Identities=12% Similarity=0.192 Sum_probs=102.1
Q ss_pred eccCCceeEEEec---C--C-CCcEEEEEeCCCeEEEEeCCCCCC-----CCCCCCCCCCcEEEecC---CCceeEEEec
Q 014433 122 INHDGEVNRARYM---P--Q-NPFLIATKTVSAEVYVFDYSKHPS-----KPPLDGACSPDLRLRGH---STEGYGLSWS 187 (424)
Q Consensus 122 ~~h~~~v~~~~~~---p--~-~~~~latg~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~~~~~h---~~~v~~l~~~ 187 (424)
+.-..+|..|+|. . + ...+|++ -....+.|+...-... .....-...++..+..+ ..+...++|+
T Consensus 76 i~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 76 IDDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFN 154 (765)
T ss_pred cCCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEec
Confidence 3567788889988 2 1 2235665 3456788888322111 00011122334444422 2356789999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCC--CcccceeeeecC-------CccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433 188 KFKEGHLLSGSDDAQICLWDINAAPKN--KSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
|.....||.....|...||++...... ..+.......++ .+.-..|.|.++...+|+ + .-..+.++|++
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~-~r~~l~~~d~~ 232 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-C-NRSKLMLIDFE 232 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-E-cCCceEEEECC
Confidence 988778999999999999999322211 111111111110 123347889877766663 3 45779999999
Q ss_pred CCCCCCCeeeeeccCCCeeEEEecCCCCe-EEEEEeCCCcEEEEECCC
Q 014433 259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEW-ILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~tg~~dg~i~iwd~~~ 305 (424)
+......+. .......|..+.-+|.... +|+.. ...|...|+..
T Consensus 233 ~~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEYLV-TAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCCccchhc-cCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 876422121 1234567888888876332 33332 36788888887
No 476
>PLN02193 nitrile-specifier protein
Probab=77.68 E-value=30 Score=33.51 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=14.2
Q ss_pred cEEEEEeCC----CeEEEEEcCCCC
Q 014433 241 YLFGSVGDD----QYLLIWDLRTPS 261 (424)
Q Consensus 241 ~~~~s~~~d----g~i~i~d~~~~~ 261 (424)
.+++.++.+ ..+.+||+.+..
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE
Confidence 356666654 458899998754
No 477
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.53 E-value=11 Score=38.15 Aligned_cols=150 Identities=11% Similarity=0.007 Sum_probs=80.5
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 219 (424)
-+..|+.+|.+.|+.-....... ........-...+.++.+++ + -+..|.-||++-.+--.-... ....+
T Consensus 549 Tic~gtq~ssisissss~~s~ke------~~~~~~spe~~~v~~l~~ss-~--Slgagl~dgt~a~y~rap~gS-wd~ep 618 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKE------VTSEPPSPEHESVKLLLFSS-G--SLGAGLIDGTLAVYGRAPSGS-WDGEP 618 (925)
T ss_pred cccccCccceeEEeeccCCcccc------eeccCCCCchhhhhhhhccc-c--ccccCccCCccccccCCCCCC-CCCCC
Confidence 36778889999998866211000 00001111233455666655 2 256666666665543221111 11111
Q ss_pred eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~ 299 (424)
...+..-..+|...++..+ . +.++.+|.|.++...+............|...|+++.....+- +++-.....++
T Consensus 619 ~~~~~~g~lPvrsla~~ed---~-~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gV--wvafasG~~~r 692 (925)
T KOG3522|consen 619 NISIPTGSLPVRSLAFQED---F-VWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGV--WVAFASGDEER 692 (925)
T ss_pred ccccccCCccccchhhhhc---e-eeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCce--EEEEcCCCEEE
Confidence 1222224567888887754 2 3677899999999887554333334445677899999886553 33322233555
Q ss_pred EEECCC
Q 014433 300 LFDLRK 305 (424)
Q Consensus 300 iwd~~~ 305 (424)
+++..+
T Consensus 693 lfhtet 698 (925)
T KOG3522|consen 693 LFHTET 698 (925)
T ss_pred Eecccc
Confidence 555444
No 478
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.81 E-value=65 Score=30.02 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=76.8
Q ss_pred CceeEEEe--cC-CCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE
Q 014433 179 TEGYGLSW--SK-FKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254 (424)
Q Consensus 179 ~~v~~l~~--~~-~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i 254 (424)
..++.+|+ ++ ++..+++....+|.+..|.+...... ...+.++.+.. .+.+..|........++ .+-.+.-|.-
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY-vgEE~~GIW~ 233 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY-VGEEDVGIWR 233 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE-EEETTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE-EecCccEEEE
Confidence 35677776 33 34546777889999999988643221 23344566654 45788899888777665 7778887877
Q ss_pred EEcCCCCCCCC--eeeee--ccCCCeeEEEec--CCC-CeEEEEEeCCCcEEEEECCCCCCcceEe
Q 014433 255 WDLRTPSVSKP--VQSVV--AHQSEVNCLAFN--PFN-EWILATGSTDKTVKLFDLRKISTALHTF 313 (424)
Q Consensus 255 ~d~~~~~~~~~--~~~~~--~~~~~v~~v~~~--~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 313 (424)
|+.+....... +.... .....|-.|+.- .++ .++|++.-.+++..+||.......+..|
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 87764332212 11111 134567777653 344 3566666668899999987644434333
No 479
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.61 E-value=69 Score=30.22 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=61.2
Q ss_pred CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEE
Q 014433 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~ 255 (424)
...+.++.|.+++. ++.++.+|.+.. ....+.. .......... .....+.++.|.+++. ++ .++..|.+..-
T Consensus 280 ~~~l~~v~~~~dg~--l~l~g~~G~l~~-S~d~G~~-~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s 353 (398)
T PLN00033 280 ARRIQNMGWRADGG--LWLLTRGGGLYV-SKGTGLT-EEDFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRS 353 (398)
T ss_pred ccceeeeeEcCCCC--EEEEeCCceEEE-ecCCCCc-ccccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEe
Confidence 45678899988776 444456676543 3333311 0000111111 1123588899987764 55 55677866554
Q ss_pred EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEE
Q 014433 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF 301 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iw 301 (424)
...++..+.......-...++.+.|.+++. .+++ +.+|.|.-|
T Consensus 354 -~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 354 -TDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred -CCCCcceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 333333222211122345788999977665 4545 467776544
No 480
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=75.42 E-value=38 Score=35.08 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCCCCCeeee-eccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCCCCCcceEecCCCCCEEE
Q 014433 249 DQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRKISTALHTFDSHKEEVFQ 322 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~h~~~v~~ 322 (424)
.+.|.+-|...... +.+ ..+..+|.+-+|+|+|+.+..+.+..+ .|++-|+++.+.-+..+...+..|..
T Consensus 328 ~~~L~~~D~dG~n~----~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaipr 403 (912)
T TIGR02171 328 TGNLAYIDYTKGAS----RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPR 403 (912)
T ss_pred CCeEEEEecCCCCc----eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccc
Confidence 35788888876542 222 346788999999999997665344444 58999999877666777777888888
Q ss_pred EEEcCCCCcEEEEEE
Q 014433 323 VGWNPKNETILASCC 337 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~ 337 (424)
-...++|...++-.+
T Consensus 404 wrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 404 WRVLENGDTVIVYVS 418 (912)
T ss_pred eEecCCCCeEEEEEc
Confidence 888888876554433
No 481
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=75.37 E-value=8.2 Score=20.33 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=20.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCeEEEEe
Q 014433 126 GEVNRARYMPQNPFLIATKTVSAEVYVFD 154 (424)
Q Consensus 126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~ 154 (424)
..|.+++..+ .++|++.+.+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577788765 4889899999999984
No 482
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.76 E-value=9.5 Score=37.76 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=25.6
Q ss_pred CeeEEEecC---CCCeEEEEEeCCCcEEEEECCCCCCcceEe
Q 014433 275 EVNCLAFNP---FNEWILATGSTDKTVKLFDLRKISTALHTF 313 (424)
Q Consensus 275 ~v~~v~~~~---~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 313 (424)
.+.+++.+. .+..++++-+.|+++++||+.+ +.++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t-~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLET-GQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTT-TCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCC-CeEEEEe
Confidence 455566655 2334788999999999999998 5664443
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=74.59 E-value=97 Score=31.40 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=41.9
Q ss_pred CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEc
Q 014433 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~ 257 (424)
..++++.-+|.+. -++++..||+|++|+.......+.. ....+-..+.|...| +++...|..+.-|.-
T Consensus 15 e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~-------~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKIC-------EEAKPKENLVFTNHG---LVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhh-------hhcCCccceeeeccc---eEEEeccchhheeec
Confidence 3466777788777 5999999999999998654321111 012233445555444 335666777766754
No 484
>PLN02153 epithiospecifier protein
Probab=74.32 E-value=63 Score=29.63 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=12.4
Q ss_pred cEEEEEeCC-----CeEEEEeCCC
Q 014433 139 FLIATKTVS-----AEVYVFDYSK 157 (424)
Q Consensus 139 ~~latg~~d-----g~v~iw~~~~ 157 (424)
.+++.|+.+ ..+.+||..+
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCC
Confidence 477777653 3577788765
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.81 E-value=87 Score=30.08 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=37.0
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEec-----CCCCCEEEEEEcCCC
Q 014433 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFD-----SHKEEVFQVGWNPKN 329 (424)
Q Consensus 273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~-----~h~~~v~~~~~sp~~ 329 (424)
-...+.|+|.|++. +|++--..|.|++++..... ..+..+. ........|+++|+-
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34578899999986 66665446999999865421 1221111 135778999999874
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=73.55 E-value=72 Score=28.98 Aligned_cols=107 Identities=10% Similarity=0.063 Sum_probs=47.6
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCCCCCCeeeeeccCCCe--eEEEecCCCCeEEEEEeCC-----CcEEEEECCCCC
Q 014433 240 EYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEV--NCLAFNPFNEWILATGSTD-----KTVKLFDLRKIS 307 (424)
Q Consensus 240 ~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~l~tg~~d-----g~i~iwd~~~~~ 307 (424)
..+++.|+.+ ..+..||+.+............-..+. .+++.. +..+.+.|+.. ..+..||+.+..
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 4577777754 356677876644200011111111111 122222 23467777742 358888887521
Q ss_pred -CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe----EEEeeCCCC
Q 014433 308 -TALHTFDSHKEEVFQVGWNPKNETILASCCLGRR----LMVWDLSRI 350 (424)
Q Consensus 308 -~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~----i~iwd~~~~ 350 (424)
..+..+... ......+...++ .+++.|+.++. +.+||..+.
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECC-EEEEEcCCCCccccceEEEecCCC
Confidence 111111111 111112222234 47777776542 456777653
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.47 E-value=44 Score=31.52 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=91.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC----cee-EEEecCCCCceEEEEeC
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST----EGY-GLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~~l~s~~~ 199 (424)
..+|..+-..|+++.+.+- +. ..+.|+++.+..... ..-.....+ .|+ .+..-.-+. -|++++.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~-~g-~~~~v~~L~~r~l~~--------rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~ 288 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVR-TG-SELVVALLDKRSLQI--------RKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHE 288 (733)
T ss_pred ccchHhhEECCCCCEEEEe-cC-CeEEEEeecccccch--------hhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcC
Confidence 4677788889998744333 32 578888887632211 000111111 122 222222233 4888889
Q ss_pred CCcEEEE-eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433 200 DAQICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 200 dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
||.|.-| |++.... ..+..++.++-...++..+.-. +.+.-|++-+..|++.++.....+. +- +..--..+.-
T Consensus 289 dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~---lL-~~~~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKL---LL-FERAYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcc---ee-hhhhhcCcce
Confidence 9988776 6655433 4444444444334445444322 2345677888899998887655332 21 1122235677
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433 279 LAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 279 v~~~~~~~~~l~tg~~dg~i~iwd~~~ 305 (424)
++++|.+.+ +++ -..|.|+++.+.+
T Consensus 363 ~~~Sp~~~~-Ll~-e~~gki~~~~l~N 387 (733)
T COG4590 363 VAMSPNQAY-LLS-EDQGKIRLAQLEN 387 (733)
T ss_pred eeeCcccch-hee-ecCCceEEEEecC
Confidence 899999886 444 3457899999887
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=73.41 E-value=79 Score=29.45 Aligned_cols=193 Identities=12% Similarity=0.167 Sum_probs=104.1
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEe----cCCCcE-EEEEe-CC---CeEEEEEcCCCCC
Q 014433 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH----LRHEYL-FGSVG-DD---QYLLIWDLRTPSV 262 (424)
Q Consensus 192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-~~s~~-~d---g~i~i~d~~~~~~ 262 (424)
.+++...+++-+.+||+.... +..+. .+.++.+..- -.++.+ |++++ .+ ..|++|.+.....
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~-------lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKE-------LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-E-------EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred ceEEEEeCCCCEEEEcCCCcE-------EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 378888889999999997542 22222 2233333221 122221 33333 32 4699998864221
Q ss_pred CCCeeeeec-------cCCCeeEEEe--cC-CCCeEEEEEeCCCcEEEEECCCC--C----CcceEecCCCCCEEEEEEc
Q 014433 263 SKPVQSVVA-------HQSEVNCLAF--NP-FNEWILATGSTDKTVKLFDLRKI--S----TALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 263 ~~~~~~~~~-------~~~~v~~v~~--~~-~~~~~l~tg~~dg~i~iwd~~~~--~----~~~~~~~~h~~~v~~~~~s 326 (424)
.+..+.. ....++.+|+ +| ++..+++....+|.+..|-+... + ++++.|.. .+.+-.|...
T Consensus 140 --~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVD 216 (381)
T PF02333_consen 140 --ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVD 216 (381)
T ss_dssp --EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEE
T ss_pred --cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEe
Confidence 1222211 1123556665 33 46666777888998888877521 2 34677765 4578888888
Q ss_pred CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC--CCCCcceEEeC--CCC-CcEEEEEeCCCcEEE
Q 014433 327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG--HTSKISDFSWN--PCE-DWVISSVAEDNILQI 401 (424)
Q Consensus 327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~--~~~-~~~l~s~~~dg~i~v 401 (424)
.... .|+.+-.+--|.-|+...... ....++....+ ....|-.++.- .++ .|||+|.-.+++..|
T Consensus 217 De~g-~LYvgEE~~GIW~y~Aep~~~---------~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~V 286 (381)
T PF02333_consen 217 DETG-RLYVGEEDVGIWRYDAEPEGG---------NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAV 286 (381)
T ss_dssp TTTT-EEEEEETTTEEEEEESSCCC----------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred cccC-CEEEecCccEEEEEecCCCCC---------CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEE
Confidence 7765 577888886566565543211 11233433332 23456677763 343 478888888899999
Q ss_pred EecCC
Q 014433 402 WQMAE 406 (424)
Q Consensus 402 w~~~~ 406 (424)
|+...
T Consensus 287 y~r~~ 291 (381)
T PF02333_consen 287 YDREG 291 (381)
T ss_dssp EESST
T ss_pred EecCC
Confidence 99875
No 489
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=73.22 E-value=69 Score=28.64 Aligned_cols=131 Identities=13% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCeeEEEecCCC-----CeEEEEEeCCCcEEEEECCCCCCcceEecC-------------------CCCCEEEEEEcC-
Q 014433 273 QSEVNCLAFNPFN-----EWILATGSTDKTVKLFDLRKISTALHTFDS-------------------HKEEVFQVGWNP- 327 (424)
Q Consensus 273 ~~~v~~v~~~~~~-----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-------------------h~~~v~~~~~sp- 327 (424)
.+.++.+.+.... .+..++=+..+-|.|+|+.+ ++..+.... ....+..++.+|
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~-~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT-GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT-TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC-CcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 4567777776532 23444544556899999987 322211111 123467777766
Q ss_pred --CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433 328 --KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 328 --~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 405 (424)
+++ .|.-+...+ -++|.+.+.............-...+..+.........++.+++|. ++++--..+.|..|+..
T Consensus 139 ~~d~r-~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~ 215 (287)
T PF03022_consen 139 SPDGR-WLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPD 215 (287)
T ss_dssp STTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETT
T ss_pred CCCcc-EEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCC
Confidence 553 344333332 2333333211100000000000011122211123456788999888 78888889999999998
Q ss_pred Cc
Q 014433 406 EN 407 (424)
Q Consensus 406 ~~ 407 (424)
+.
T Consensus 216 ~~ 217 (287)
T PF03022_consen 216 GP 217 (287)
T ss_dssp TS
T ss_pred CC
Confidence 73
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.18 E-value=74 Score=29.02 Aligned_cols=162 Identities=16% Similarity=0.162 Sum_probs=81.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCe------EEEEeCCCCCCCCCCCCCCCCcEEEecCCC--------ceeEEEecCCC
Q 014433 125 DGEVNRARYMPQNPFLIATKTVSAE------VYVFDYSKHPSKPPLDGACSPDLRLRGHST--------EGYGLSWSKFK 190 (424)
Q Consensus 125 ~~~v~~~~~~p~~~~~latg~~dg~------v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~l~~~~~~ 190 (424)
-+.+..|.+.|++..++| -+.+|. ++.+++......... -.......+..-.+ ..-+|++.+++
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGG-VTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccc-eEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 356778899875554444 466777 666666541111100 00011111221111 33477885555
Q ss_pred CceEEEEeCC------CcEEEEeCCCCCCCCcccceeee---------ecCCccEeeEEEecCCCcEEEEEe----CCC-
Q 014433 191 EGHLLSGSDD------AQICLWDINAAPKNKSLEAMQIF---------KVHEGVVEDVAWHLRHEYLFGSVG----DDQ- 250 (424)
Q Consensus 191 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~s~~----~dg- 250 (424)
. ++++.-.+ ..|..++.. +.....+.....+ ........+|+++|++..++++.- .|+
T Consensus 97 ~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 97 S-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred C-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 4 55555455 678888866 3332222111111 124567899999999986664321 122
Q ss_pred --------eEEE--EEcCCCC-CCCC-eeeeec-----cCCCeeEEEecCCCCeEEEE
Q 014433 251 --------YLLI--WDLRTPS-VSKP-VQSVVA-----HQSEVNCLAFNPFNEWILAT 291 (424)
Q Consensus 251 --------~i~i--~d~~~~~-~~~~-~~~~~~-----~~~~v~~v~~~~~~~~~l~t 291 (424)
.+++ ||..+.. .... ...+.. ....+..+.+-++++. |+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l-LvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL-LVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE-EEE
Confidence 1444 4544422 1111 111111 3467888899898874 443
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=72.62 E-value=25 Score=24.73 Aligned_cols=31 Identities=3% Similarity=0.188 Sum_probs=26.6
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
..+++.++|+++++.++....+.|++++...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4688999999998888888899999998764
No 492
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.26 E-value=43 Score=25.84 Aligned_cols=112 Identities=10% Similarity=0.119 Sum_probs=64.8
Q ss_pred EecCCCCceEEEEeCCCcEEEEeCCCCCCCC--cccceeeeecCCccEeeEEEec----CCCcEEEEEeCCCeEEEEEcC
Q 014433 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNK--SLEAMQIFKVHEGVVEDVAWHL----RHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~s~~~dg~i~i~d~~ 258 (424)
.|....+ .|++++.-|.|.|++........ .-..+..+. ....|++|+-.+ ++..+|+.|+ ...+..||+.
T Consensus 5 kfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4555556 58888888999999876543211 111223333 456777776544 2344565554 5679999998
Q ss_pred CCCCCCCeeeeeccCCCeeEEEecCC---CCeEEEEEeCCCcEEEEECC
Q 014433 259 TPSVSKPVQSVVAHQSEVNCLAFNPF---NEWILATGSTDKTVKLFDLR 304 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~l~tg~~dg~i~iwd~~ 304 (424)
.... +. ++.-...|+++.+-.. ...++++|+ +..|.=||..
T Consensus 82 ~N~d---~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~ 125 (136)
T PF14781_consen 82 NNSD---LF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYE 125 (136)
T ss_pred cCch---hh-hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCC
Confidence 8664 22 2234567888776321 223455543 5566666654
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=71.84 E-value=79 Score=28.72 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=32.1
Q ss_pred CcEEEEEeC-----CCeEEEEEcCCCCCCCCeeeeecc-CCCeeEEEecCCCCeEEEEEeCCC----cEEEEECCC
Q 014433 240 EYLFGSVGD-----DQYLLIWDLRTPSVSKPVQSVVAH-QSEVNCLAFNPFNEWILATGSTDK----TVKLFDLRK 305 (424)
Q Consensus 240 ~~~~~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~tg~~dg----~i~iwd~~~ 305 (424)
..+++.|+. ...+..||+.+..- ..+..+... .....++.. .+ .+.+.|+.++ .+.+||..+
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~~r~~~~~~~~--~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEW-FELPDFPGEPRVQPVCVKL--QN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCe-eECCCCCCCCCCcceEEEE--CC-EEEEEcCCCCccccceEEEecCC
Confidence 457777764 24588899887542 222211111 111111222 23 4788887664 356788875
No 494
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=70.28 E-value=29 Score=24.46 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.3
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~ 305 (424)
...+.|.++|+++.+.++....+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45678999999998888888889999998653
No 495
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=69.85 E-value=1.3e+02 Score=30.37 Aligned_cols=228 Identities=11% Similarity=0.159 Sum_probs=110.4
Q ss_pred CCCcEEEEEEeccCCceeEEEecCC--CCcEEEEEeCC-CeEEEEeCCCCCCCC---CCCCCCCCcEEEecCCCceeEEE
Q 014433 112 ANGKVQIIQQINHDGEVNRARYMPQ--NPFLIATKTVS-AEVYVFDYSKHPSKP---PLDGACSPDLRLRGHSTEGYGLS 185 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~latg~~d-g~v~iw~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~ 185 (424)
++|++.--.-+.-...|.|+..... +..+.++|-.+ +.-++-.+....... ...........+. -...|.++.
T Consensus 58 PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik 136 (670)
T PF10395_consen 58 PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELK-LDDKVVGIK 136 (670)
T ss_pred CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEE-cccceEEEE
Confidence 4566666666667777888776542 23455666444 334544444321110 0111122223333 467889999
Q ss_pred ecCCCCceEEEEeCCCcEEEEeCCCCCCCC--cccceeee-ecCCccEeeEEEecCCCcEEEEEe-CC--CeEEEEEcCC
Q 014433 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNK--SLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVG-DD--QYLLIWDLRT 259 (424)
Q Consensus 186 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~-~d--g~i~i~d~~~ 259 (424)
+.+++. .+++...+|.|.+||........ .+...... ..+..-|.....-.....+|+.+. .+ -..+++.+..
T Consensus 137 ~~~~~~-~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~ 215 (670)
T PF10395_consen 137 FSSDGK-IIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSN 215 (670)
T ss_pred EecCCC-EEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEecc
Confidence 998777 68899999999999993322111 11000000 001122222222122334443333 12 3466777722
Q ss_pred CCCCCCeeeee---ccCCCeeEEEecC-CCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-----C-CCEEEEE-EcCC
Q 014433 260 PSVSKPVQSVV---AHQSEVNCLAFNP-FNEWILATGSTDKTVKLFDLRKISTALHTFDSH-----K-EEVFQVG-WNPK 328 (424)
Q Consensus 260 ~~~~~~~~~~~---~~~~~v~~v~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-----~-~~v~~~~-~sp~ 328 (424)
.. .++..+. .+........|+- +|. +..- .+++|.+|++... +..+++... . ..+.++. .+++
T Consensus 216 ~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l--~~~~i~~ysip~f-~~~~tI~l~~ii~~~~~~~vSl~~~s~n 289 (670)
T PF10395_consen 216 ES--SSIFELSSTILENFGLEDSKFCYQFGK-LYQL--SKKTISSYSIPNF-QIQKTISLPSIIDKESDDLVSLKPPSPN 289 (670)
T ss_pred CC--cceEEeehheeccCCcccceEEEeCCE-EEEE--eCCEEEEEEcCCc-eEEEEEEechhhccccccceEeecCCCC
Confidence 11 1222222 1222222222322 343 2322 6789999999873 444443321 1 1233332 3333
Q ss_pred CCcEEEEEECCCeEEEeeCCCCC
Q 014433 329 NETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
++|++. ++.|++.|+....
T Consensus 290 --RvLLs~--~nkIyLld~~~~s 308 (670)
T PF10395_consen 290 --RVLLSV--NNKIYLLDLKFES 308 (670)
T ss_pred --eEEEEc--CCEEEEEeehhhh
Confidence 355443 5679999987654
No 496
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=69.25 E-value=96 Score=28.67 Aligned_cols=35 Identities=6% Similarity=0.058 Sum_probs=22.0
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 409 (424)
...+.++.+|++.++|++=..-..|+=+-++....
T Consensus 219 ~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 219 YFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA 253 (376)
T ss_pred cccccccCCCCCCEEEEEeeccceeeeeEecCCcc
Confidence 34688999999997666655444444444554443
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=68.89 E-value=69 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.567 Sum_probs=24.4
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 406 (424)
..|..++..+..+ ++++...+|.|++|++..
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 3489999998887 799999999999999975
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.45 E-value=87 Score=27.88 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe------CCCcEEEEECCCCCCcceEecC-----CCC
Q 014433 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS------TDKTVKLFDLRKISTALHTFDS-----HKE 318 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~-----h~~ 318 (424)
..|++||..+.+-..+- ..-.+.|+++.|....+ +++.|. ....+..||+.+ .....+.. -.+
T Consensus 16 ~~lC~yd~~~~qW~~~g---~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG---NGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEeecCC---CCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCC
Confidence 46999998876531111 12457899999985444 777775 345788899886 23333333 236
Q ss_pred CEEEEEEcC-CCCcEEEEEE-CCC--eEEEeeCCCC
Q 014433 319 EVFQVGWNP-KNETILASCC-LGR--RLMVWDLSRI 350 (424)
Q Consensus 319 ~v~~~~~sp-~~~~~l~s~~-~dg--~i~iwd~~~~ 350 (424)
+|..+.+.. ++..+.++|. .+| .|..||-...
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 788888753 3334555554 333 4666765544
No 499
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=65.12 E-value=1.8e+02 Score=30.28 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=44.7
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE------------ec------CCCCCEEEEEEcCCCCcEEEE
Q 014433 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT------------FD------SHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~------------~~------~h~~~v~~~~~sp~~~~~l~s 335 (424)
..|.+|.....+. +++....||+|.++|..+....... +. .+-..+..++|||.+- .++.
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQ 337 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc-eEEE
Confidence 4577777766665 6888899999999998774221111 00 0111344588999985 5777
Q ss_pred EECCCeEE
Q 014433 336 CCLGRRLM 343 (424)
Q Consensus 336 ~~~dg~i~ 343 (424)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 77788755
No 500
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=61.47 E-value=1.4e+02 Score=27.70 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=70.8
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccc--eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433 193 HLLSGSDDAQICLWDINAAPKNKSLEA--MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
++.+|..+|-|..-+............ ......-.+....++|...+..++++ |...-+|.+.-.........-.
T Consensus 78 l~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~Va---DAYlGL~~V~p~g~~a~~l~~~ 154 (376)
T KOG1520|consen 78 LKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVA---DAYLGLLKVGPEGGLAELLADE 154 (376)
T ss_pred EEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEE---ecceeeEEECCCCCcceecccc
Confidence 456666666666665531111111110 01111123567789999988667643 4555555443221110000000
Q ss_pred ccC---CCeeEEEecCCCC--------------eEEE--EEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433 271 AHQ---SEVNCLAFNPFNE--------------WILA--TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 271 ~~~---~~v~~v~~~~~~~--------------~~l~--tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 331 (424)
... .-.+.+..++.|. .+++ .+..+|.+.-||..+ +..+.+...-.-.+.++.||++..
T Consensus 155 ~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t--K~~~VLld~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 155 AEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST--KVTKVLLDGLYFPNGLALSPDGSF 232 (376)
T ss_pred ccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcc--cchhhhhhcccccccccCCCCCCE
Confidence 000 0112333333221 2222 344567788888775 333333333445678999999986
Q ss_pred EEEEEECCCeEEEeeCC
Q 014433 332 ILASCCLGRRLMVWDLS 348 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~ 348 (424)
++++=+.-..|+=|-+.
T Consensus 233 vl~~Et~~~ri~rywi~ 249 (376)
T KOG1520|consen 233 VLVAETTTARIKRYWIK 249 (376)
T ss_pred EEEEeeccceeeeeEec
Confidence 55554444444433343
Done!