BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014434
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
Length = 853
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 45 PLHHGKANLQFMEDHKQRYLRYFLQRAIISFDEFVQFIKLREAELRGSYAEKIELSSDKF 104
PL +A QF++D+K R LR ++ + +LR+ G K
Sbjct: 41 PLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALPRLRQMVEDG-----------KL 89
Query: 105 VEMILLDAGFIIELLLRYHFRQPQKKDDHIFHKPYLIEDIWYDMWLLENQLPFFILEDLF 164
+ + + G Y F +P + F P D+ LL+ QL FF+LE+ F
Sbjct: 90 KDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFGAP--------DITLLK-QLTFFLLENDF 140
Query: 165 ALAAIEIPEQHENPTIITVTYEYFKGLEAVQGNRL 199
PE T +Y G + Q NRL
Sbjct: 141 PTG----PETLRQVREAIATLQYGSGSYSGQLNRL 171
>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 799
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 45 PLHHGKANLQFMEDHKQRYLRYFLQRAIISFDEFVQFIKLREAELRGSYAEKIELSSDKF 104
PL +A QF++D+K R LR ++ + +LR+ G K
Sbjct: 41 PLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALPRLRQMVEDG-----------KL 89
Query: 105 VEMILLDAGFIIELLLRYHFRQPQKKDDHIFHKPYLIEDIWYDMWLLENQLPFFILEDLF 164
+ + + G Y F +P + F P D+ LL+ QL FF+LE+ F
Sbjct: 90 KDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFGAP--------DITLLK-QLTFFLLENDF 140
Query: 165 ALAAIEIPEQHENPTIITVTYEYFKGLEAVQGNRL 199
PE T +Y G + Q NRL
Sbjct: 141 PTG----PETLRQVREAIATLQYGSGSYSGQLNRL 171
>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 770
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 45 PLHHGKANLQFMEDHKQRYLRYFLQRAIISFDEFVQFIKLREAELRGSYAEKIELSSDKF 104
PL +A QF++D+K R LR ++ + +LR+ G K
Sbjct: 41 PLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALPRLRQMVEDG-----------KL 89
Query: 105 VEMILLDAGFIIELLLRYHFRQPQKKDDHIFHKPYLIEDIWYDMWLLENQLPFFILEDLF 164
+ + + G Y F +P + F P D+ LL+ QL FF+LE+ F
Sbjct: 90 KDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFGAP--------DITLLK-QLTFFLLENDF 140
Query: 165 ALAAIEIPEQHENPTIITVTYEYFKGLEAVQGNRL 199
PE T +Y G + Q NRL
Sbjct: 141 PTG----PETLRQVREAIATLQYGSGSYSGQLNRL 171
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G
Trapped With A Gtp Analogue
Length = 691
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 36 YTPQVVSIGPLHHGKANLQFMEDHKQRYL 64
YT ++ IG +H G A + FME ++R +
Sbjct: 35 YTGRIHKIGEVHEGAATMDFMEQERERGI 63
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 36 YTPQVVSIGPLHHGKANLQFMEDHKQRYL 64
YT ++ IG +H G A + FME ++R +
Sbjct: 35 YTGRIHKIGEVHEGAATMDFMEQERERGI 63
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 36 YTPQVVSIGPLHHGKANLQFMEDHKQRYL 64
YT ++ IG +H G A + FME ++R +
Sbjct: 35 YTGRIHKIGEVHEGAATMDFMEQERERGI 63
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With
Ef-G, Gdp And Fusidic Acid
Length = 691
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 36 YTPQVVSIGPLHHGKANLQFMEDHKQRYL 64
YT ++ IG +H G A + FME ++R +
Sbjct: 35 YTGRIHKIGEVHEGAATMDFMEQERERGI 63
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 36 YTPQVVSIGPLHHGKANLQFMEDHKQRYL 64
YT ++ IG +H G A + FME ++R +
Sbjct: 35 YTGRIHKIGEVHEGAATMDFMEQERERGI 63
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With
The Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of
4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of
4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (30s Subunit)
Length = 691
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 36 YTPQVVSIGPLHHGKANLQFMEDHKQRYL 64
YT ++ IG +H G A + FME ++R +
Sbjct: 35 YTGRIHKIGEVHEGAATMDFMEQERERGI 63
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 36 YTPQVVSIGPLHHGKANLQFMEDHKQRYL 64
YT ++ IG +H G A + FME ++R +
Sbjct: 35 YTGRIHKIGEVHEGAATMDFMEQERERGI 63
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 21/166 (12%)
Query: 250 AGVRFSLSKSND----LFAIEFKNSTLHIPKLKLQLETESLFRNLIAFEQRHYSENYIND 305
AG R+ K+N L + FK T + P+ L+ E ES+ +L A+ R ++ YI
Sbjct: 43 AGSRYESEKNNGAGYFLEHLAFKG-TKNRPQNALEKEVESMGAHLNAYSSREHTAYYIKA 101
Query: 306 YVFLIHHLVNTAKDVELLVQNGIIENWLPDKEAASTLINNLSRGTT---------LLADR 356
+ V D+ VQN +E+ +KE ++ L T L A
Sbjct: 102 LSKDVPKAVELLADI---VQNCSLEDSQIEKE-RDVIVRELQENDTSMREVVFNYLHATA 157
Query: 357 FYFSGLCKGLNDHCKRTCYKWRANLKQ---NYFNTPWAGISVCGAV 399
F +GL + + + RA+L + ++ P ++ G V
Sbjct: 158 FQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTAPRMVLAAAGGV 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,583,568
Number of Sequences: 62578
Number of extensions: 519617
Number of successful extensions: 1089
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 13
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)