BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014434
(424 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 218/428 (50%), Gaps = 33/428 (7%)
Query: 18 NCCIYRVPERLRQINEKAYTPQVVSIGPLHHGKANLQFMEDHKQRYLRYFLQRAI---IS 74
+CCI+RVPE +N KAY P+VVSIGP H+G+ +LQ ++ HK R L+ FL A +
Sbjct: 45 SCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVE 104
Query: 75 FDEFVQFIKLREAELRGSYAEKIELSSDKFVEMILLDAGFIIELLLRYHFRQPQKKDDHI 134
+ V+ + E ++R SY+E+++ D + M++LD FI+ + L + +D I
Sbjct: 105 ENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFLIMS-GNIELSEDPI 162
Query: 135 FHKPYLIEDIWYDMWLLENQLPFFILEDLFALAAIEIPEQHENPTIITVTYEYFKGLEAV 194
F P+L+ I D+ LLENQ+PFF+L+ L+ + I + + + + +FK
Sbjct: 163 FSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD-----LNRIAFHFFKNPIDK 217
Query: 195 QGNRLKFPPYTEARVEHFLDFLRICHLPSSRNQEKQEGQ----QYRKGKT--VPSVTD-- 246
+G+ + + + +H LD +R LP++ +K Q +GK+ VPSV
Sbjct: 218 EGSY--WEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKA 275
Query: 247 ---------LHQAGVRFSL--SKSNDLFAIEFKNSTLHIPKLKLQLETESLFRNLIAFEQ 295
L G++F L SK + + + K + L IP+L+ S F N +AFEQ
Sbjct: 276 VPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQ 335
Query: 296 RHY-SENYINDYVFLIHHLVNTAKDVELLVQNG-IIENWLPDKEAASTLINNLSRGTTLL 353
+ S N I Y+ + L+N +DV L + IIEN S +S+
Sbjct: 336 FYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFE 395
Query: 354 ADRFYFSGLCKGLNDHCKRTCYKWRANLKQNYFNTPWAGISVCGAVFLLILTVIQAVCSV 413
D Y + + KG+N++ K+ A + +F +PW +S C +F+++LT++Q+ ++
Sbjct: 396 VDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQSTVAI 455
Query: 414 IQVLSPPK 421
+ L+ K
Sbjct: 456 LSYLNDKK 463
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 240 TVPSVTDLHQAGVRFSLSKSNDLFAIEFKNST--LHIPKLKLQLETESLFRNLIAFEQRH 297
T+PSV+DLH+AGVRF + ++ + F +++ ++P + L + TE++ RNL+A+E +
Sbjct: 344 TIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATN 403
Query: 298 YSENYI-NDYVFLIHHLVNTAKDVELLVQNGIIENWLPDKEAASTLINNLSRGTTLLADR 356
S + Y LI+ ++++ +DV LL + G++ + L + A+ + N +S+ L
Sbjct: 404 TSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVG 463
Query: 357 FYFSGLCKGLNDHCKRTCYKWRANLKQ 383
F L K + D + +W+ + +
Sbjct: 464 F----LDKTIEDVNRYYTGRWKVKIGR 486
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 1 MEECLQVKLEKLSPLPSNCCIYRVPERLRQINEKAYTPQVVSIGPLHHGKANLQFMEDHK 60
+++ L +LE+ I+ VP+ L + +YTP VSIGP H K L ME +K
Sbjct: 25 VQKSLDAELEEHDLEEVTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYK 84
Query: 61 QRYLRYFL-QRAIISFDEFVQFIKLREAELRGSYAEKIELSSDKFVEMILLDAGFIIELL 119
R Q F + V+ ++ E ++R Y + I + + + ++ +D+ F+IE L
Sbjct: 85 LMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFL 144
Query: 120 LRYHFRQPQKKDDHIFHKPYLIEDIWYDMWLLENQLPFFIL 160
Y FR+ + + + H +I D+ ++ENQ+P F+L
Sbjct: 145 KIYSFRKVETLINRVGHN-----EILRDIMMIENQIPLFVL 180
>sp|A8ESZ8|URE1_ARCB4 Urease subunit beta OS=Arcobacter butzleri (strain RM4018) GN=ureB
PE=3 SV=1
Length = 566
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 203 PYTEARVEHFLDFLRICHLPSSRNQEKQEGQQYR-KGKTVPSVTDLHQAGVRFSLSKSN 260
PYT+ +E LD L +CH S + E + R +GKT+ + LH G S++ S+
Sbjct: 303 PYTKNTIEEHLDMLMVCHHLSPKIPEDVSFAESRIRGKTIAAEDVLHDLGA-ISITSSD 360
>sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacillus subtilis (strain
168) GN=mfd PE=3 SV=1
Length = 1177
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 270 STLHIPKLKLQLETES-LFRNLIAFEQRH-----------YSENYINDYVFLIHHLVNTA 317
S +P +KL + TE LF+N + + R YSE I DYV I+H +
Sbjct: 457 SGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKY 516
Query: 318 KDVELLVQNGIIENWL 333
+E L NGI +++L
Sbjct: 517 LGIETLEINGIHKDYL 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,583,990
Number of Sequences: 539616
Number of extensions: 6601975
Number of successful extensions: 14571
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 14557
Number of HSP's gapped (non-prelim): 9
length of query: 424
length of database: 191,569,459
effective HSP length: 120
effective length of query: 304
effective length of database: 126,815,539
effective search space: 38551923856
effective search space used: 38551923856
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)