Query 014434
Match_columns 424
No_of_seqs 128 out of 680
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 3E-110 7E-115 853.8 34.9 378 21-405 1-391 (391)
2 COG4575 ElaB Uncharacterized c 71.3 3.8 8.2E-05 34.2 2.7 20 387-407 81-100 (104)
3 PF09069 EF-hand_3: EF-hand; 63.8 14 0.0003 30.2 4.5 54 58-111 2-76 (90)
4 PHA02103 hypothetical protein 61.5 18 0.00039 30.3 4.8 78 252-332 6-104 (135)
5 PRK10404 hypothetical protein; 56.8 10 0.00022 31.6 2.7 25 379-407 73-97 (101)
6 PF12911 OppC_N: N-terminal TM 56.2 9.4 0.0002 27.6 2.2 34 381-414 8-41 (56)
7 PF07438 DUF1514: Protein of u 56.2 12 0.00027 28.3 2.7 22 390-411 2-23 (66)
8 PF14770 TMEM18: Transmembrane 55.9 15 0.00033 31.7 3.7 49 364-415 56-104 (123)
9 PF14579 HHH_6: Helix-hairpin- 54.1 90 0.002 24.9 7.9 83 251-337 1-87 (90)
10 PRK10132 hypothetical protein; 49.1 16 0.00034 30.8 2.7 20 387-407 84-103 (108)
11 PHA02680 ORF090 IMV phosphoryl 47.5 35 0.00076 27.6 4.2 34 388-421 43-76 (91)
12 PF05767 Pox_A14: Poxvirus vir 45.1 40 0.00088 27.4 4.3 34 388-421 42-76 (92)
13 PHA03048 IMV membrane protein; 38.0 65 0.0014 26.2 4.4 34 388-421 41-75 (93)
14 PF15103 G0-G1_switch_2: G0/G1 37.9 32 0.00069 28.6 2.7 28 392-419 28-55 (102)
15 PF10961 DUF2763: Protein of u 36.8 49 0.0011 27.0 3.7 31 388-418 14-47 (91)
16 PF05957 DUF883: Bacterial pro 34.5 36 0.00078 27.5 2.6 20 387-407 71-90 (94)
17 PF11293 DUF3094: Protein of u 34.4 92 0.002 22.9 4.3 36 363-403 9-44 (55)
18 PF04971 Lysis_S: Lysis protei 33.8 61 0.0013 25.0 3.5 32 377-408 20-51 (68)
19 KOG3110 Riboflavin kinase [Coe 33.1 36 0.00079 29.8 2.5 59 36-94 65-138 (153)
20 PHA02898 virion envelope prote 32.5 84 0.0018 25.5 4.2 34 388-421 42-76 (92)
21 PF05421 DUF751: Protein of un 29.2 93 0.002 23.5 3.8 30 385-414 30-59 (61)
22 PF00690 Cation_ATPase_N: Cati 29.2 1.4E+02 0.0031 22.3 5.0 59 334-400 4-68 (69)
23 PF02468 PsbN: Photosystem II 28.2 59 0.0013 22.8 2.4 29 395-423 5-34 (43)
24 PF09820 AAA-ATPase_like: Pred 27.1 76 0.0016 31.2 4.0 60 332-396 222-282 (284)
25 KOG4134 DNA-dependent RNA poly 24.7 55 0.0012 31.2 2.3 37 14-61 20-56 (253)
26 KOG3488 Dolichol phosphate-man 24.5 1.1E+02 0.0025 23.7 3.5 42 381-422 38-79 (81)
27 PF11446 DUF2897: Protein of u 24.0 88 0.0019 23.1 2.8 21 388-408 4-24 (55)
28 cd00925 Cyt_c_Oxidase_VIa Cyto 21.9 90 0.002 25.2 2.7 28 388-415 14-41 (86)
29 PF05915 DUF872: Eukaryotic pr 21.7 1.1E+02 0.0024 26.1 3.4 27 388-416 39-65 (115)
30 PF11662 DUF3263: Protein of u 20.7 1.3E+02 0.0027 23.9 3.2 31 288-318 8-51 (77)
31 COG4794 EscS Type III secretor 20.3 1.2E+02 0.0026 24.6 3.1 19 395-413 26-44 (89)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=3.3e-110 Score=853.81 Aligned_cols=378 Identities=43% Similarity=0.744 Sum_probs=336.1
Q ss_pred eeecCchhhhcCccCCcceEeeeccCCCCCcccchhHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHhccchhcc
Q 014434 21 IYRVPERLRQINEKAYTPQVVSIGPLHHGKANLQFMEDHKQRYLRYFLQRAI---ISFDEFVQFIKLREAELRGSYAEKI 97 (424)
Q Consensus 21 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~---~~l~~~~~~i~~~e~~~R~~Y~~~~ 97 (424)
|||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++|++ .++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc-CCCCccchhhHhhhhhhhcccchHHHHHHHHHHhhhcCCCCC
Q 014434 98 E-LSSDKFVEMILLDAGFIIELLLRYHFRQPQKKDDH-IFHKPYLIEDIWYDMWLLENQLPFFILEDLFALAAIEIPEQH 175 (424)
Q Consensus 98 ~-~~~~ef~~MmllDGcFlLe~~~~~~~~~~~~~~d~-~~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~~~~~~ 175 (424)
+ +++++|++||++|||||||+|+++.. ..+.+|| ++..+|....|++||+|||||||||||++||++ ..+....
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l--~~~~~~~ 156 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFEL--LFGSKSD 156 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHH--hcccccC
Confidence 7 99999999999999999999998876 2346788 888999999999999999999999999999999 5433334
Q ss_pred CcchHHHHHHHhccCcccccCCCCCCCCCccccccchhHHHHHHhCCCCCCC-c-ccccc----cccCCccccCHHHHHH
Q 014434 176 ENPTIITVTYEYFKGLEAVQGNRLKFPPYTEARVEHFLDFLRICHLPSSRNQ-E-KQEGQ----QYRKGKTVPSVTDLHQ 249 (424)
Q Consensus 176 ~~~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~~~~-~-~~~~~----~~~~~~~~~sAteL~~ 249 (424)
...++.+++.+||....+...+. .. ....+++|||||+|++++|++... + +..+. .......|||||||++
T Consensus 157 ~~~~l~~l~~~~~~~~~~~~~~~-~~--~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~ 233 (391)
T PF03140_consen 157 VDESLIDLVLKFFYKHWPSWPPD-EP--ISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELRE 233 (391)
T ss_pred ccchHHHHHHhHhcccccccccc-cc--ccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHh
Confidence 45789999999994322211111 11 112578999999999999932211 1 11110 0123568999999999
Q ss_pred cCcEEEecCCC-CccceEEcCcEEeeceeEeccchhHHHHHHHHHHHhcCC-CcchhhHHHHHHHhhCChhhHHHHHHCC
Q 014434 250 AGVRFSLSKSN-DLFAIEFKNSTLHIPKLKLQLETESLFRNLIAFEQRHYS-ENYINDYVFLIHHLVNTAKDVELLVQNG 327 (424)
Q Consensus 250 aGVkfk~~~~~-~llDV~F~~G~L~IP~l~id~~T~~llrNLiA~Eq~~~~-~~~vtsYv~fM~~LI~t~eDV~lL~~~g 327 (424)
|||+||++++. +++||+|++|+|+||+|.||++|+++||||||||||++. +.+|||||.||++||+|++||++|+++|
T Consensus 234 aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kg 313 (391)
T PF03140_consen 234 AGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKG 313 (391)
T ss_pred CCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCC
Confidence 99999999876 699999999999999999999999999999999999988 8999999999999999999999999999
Q ss_pred ceeccCCChHHHHHHHHhhccCcccCCCCccHHHHHHHHHHHccCchhhhhhhhcccccccccHHHHHHHHHHHHHHH
Q 014434 328 IIENWLPDKEAASTLINNLSRGTTLLADRFYFSGLCKGLNDHCKRTCYKWRANLKQNYFNTPWAGISVCGAVFLLILT 405 (424)
Q Consensus 328 Ii~~~lg~deeva~lFn~L~~~~~~~~~~~y~~~v~~~l~~y~~~r~~~w~a~l~~~yf~npw~~is~~aA~~ll~lt 405 (424)
||+|++|+||||++|||+||++++.+.+.+||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|++|
T Consensus 314 Ii~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 314 IIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred eEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999887789999999999999999999999999999999999999999999999997
No 2
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=71.35 E-value=3.8 Score=34.17 Aligned_cols=20 Identities=30% Similarity=0.793 Sum_probs=14.8
Q ss_pred ccccHHHHHHHHHHHHHHHHH
Q 014434 387 NTPWAGISVCGAVFLLILTVI 407 (424)
Q Consensus 387 ~npw~~is~~aA~~ll~lt~~ 407 (424)
-|||..|++-| +++|+++++
T Consensus 81 e~PWq~VGvaA-aVGlllGlL 100 (104)
T COG4575 81 ENPWQGVGVAA-AVGLLLGLL 100 (104)
T ss_pred cCCchHHHHHH-HHHHHHHHH
Confidence 49999999855 567766664
No 3
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=63.81 E-value=14 Score=30.16 Aligned_cols=54 Identities=13% Similarity=0.327 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcc-----cHHHHHHHHHH-------------HHHHHhccchh---ccCCChHHHHHHHHHH
Q 014434 58 DHKQRYLRYFLQRAII-----SFDEFVQFIKL-------------REAELRGSYAE---KIELSSDKFVEMILLD 111 (424)
Q Consensus 58 ~~K~~~~~~~l~r~~~-----~l~~~~~~i~~-------------~e~~~R~~Y~~---~~~~~~~ef~~MmllD 111 (424)
+.|.||+=+++...+. .++.++..+.. .|..+|+|+.. .-+++.++|+..|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 3589999888876432 34444433322 67889999976 4578999999888765
No 4
>PHA02103 hypothetical protein
Probab=61.47 E-value=18 Score=30.28 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=51.0
Q ss_pred cEEEe---cCCCCcc--ceEEc----CcEE--eeceeEeccchhHHHHHHHHHHHhcCC-----C-----cchhhHHHHH
Q 014434 252 VRFSL---SKSNDLF--AIEFK----NSTL--HIPKLKLQLETESLFRNLIAFEQRHYS-----E-----NYINDYVFLI 310 (424)
Q Consensus 252 Vkfk~---~~~~~ll--DV~F~----~G~L--~IP~l~id~~T~~llrNLiA~Eq~~~~-----~-----~~vtsYv~fM 310 (424)
.||++ .+.++.+ .|.|+ +.+| +||++..|....-+-|=.+-+|.|... + .++-+|-.
T Consensus 6 lkf~~fk~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyr-- 83 (135)
T PHA02103 6 LKFTPFKPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYR-- 83 (135)
T ss_pred eeeeccCCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHH--
Confidence 45554 3344444 34454 3554 899999999999999999999999643 1 23444443
Q ss_pred HHhhCChhhHHHHHHCCceecc
Q 014434 311 HHLVNTAKDVELLVQNGIIENW 332 (424)
Q Consensus 311 ~~LI~t~eDV~lL~~~gIi~~~ 332 (424)
-+-..+|-|++-.+-||=.-|
T Consensus 84 -yf~ee~e~ie~we~ygve~l~ 104 (135)
T PHA02103 84 -YFGEEAEGVELWEEYGVEGLC 104 (135)
T ss_pred -HhcccchhhhHHHHhCcceee
Confidence 334567777777777775433
No 5
>PRK10404 hypothetical protein; Provisional
Probab=56.79 E-value=10 Score=31.57 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=18.1
Q ss_pred hhhcccccccccHHHHHHHHHHHHHHHHH
Q 014434 379 ANLKQNYFNTPWAGISVCGAVFLLILTVI 407 (424)
Q Consensus 379 a~l~~~yf~npw~~is~~aA~~ll~lt~~ 407 (424)
..++|+ |||..+++ ||.++|+++++
T Consensus 73 d~yV~e---~Pw~avGi-aagvGlllG~L 97 (101)
T PRK10404 73 DDYVHE---KPWQGIGV-GAAVGLVLGLL 97 (101)
T ss_pred HHHHHh---CcHHHHHH-HHHHHHHHHHH
Confidence 444564 99999997 44588888776
No 6
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=56.24 E-value=9.4 Score=27.61 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=27.2
Q ss_pred hcccccccccHHHHHHHHHHHHHHHHHHHHHHHh
Q 014434 381 LKQNYFNTPWAGISVCGAVFLLILTVIQAVCSVI 414 (424)
Q Consensus 381 l~~~yf~npw~~is~~aA~~ll~lt~~QT~~sv~ 414 (424)
..+.+++|+..+++++.-+++++++++..+++-+
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3577888999999998888888888888777554
No 7
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=56.24 E-value=12 Score=28.32 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 014434 390 WAGISVCGAVFLLILTVIQAVC 411 (424)
Q Consensus 390 w~~is~~aA~~ll~lt~~QT~~ 411 (424)
|.++|.+.|+++|++-.+|+-.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 8999999999999998888754
No 8
>PF14770 TMEM18: Transmembrane protein 18
Probab=55.91 E-value=15 Score=31.72 Aligned_cols=49 Identities=31% Similarity=0.299 Sum_probs=37.2
Q ss_pred HHHHHHccCchhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014434 364 KGLNDHCKRTCYKWRANLKQNYFNTPWAGISVCGAVFLLILTVIQAVCSVIQ 415 (424)
Q Consensus 364 ~~l~~y~~~r~~~w~a~l~~~yf~npw~~is~~aA~~ll~lt~~QT~~sv~~ 415 (424)
|.+|++..+.|+... +++||.+-=.+||++-++=+|+.+++..+..+++
T Consensus 56 E~iN~~~a~nW~~Fs---~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l~~ 104 (123)
T PF14770_consen 56 EYINEYAARNWRSFS---KQNYFDSSGVFISVVFSAPLLLNCLIILVNWLYQ 104 (123)
T ss_pred HHHHHHHHHHHHHHh---hccCcCCCCeeehHHHHHhHHHHHHHHHHHHHHH
Confidence 889999988875443 6799999999999998876666666665555544
No 9
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=54.11 E-value=90 Score=24.95 Aligned_cols=83 Identities=8% Similarity=0.185 Sum_probs=57.0
Q ss_pred CcEEEecC-CCCccceEEcC--cEEeeceeEeccchhHHHHHHHHHHHhcCCCcchhhHHHHHHHh-hCChhhHHHHHHC
Q 014434 251 GVRFSLSK-SNDLFAIEFKN--STLHIPKLKLQLETESLFRNLIAFEQRHYSENYINDYVFLIHHL-VNTAKDVELLVQN 326 (424)
Q Consensus 251 GVkfk~~~-~~~llDV~F~~--G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~vtsYv~fM~~L-I~t~eDV~lL~~~ 326 (424)
||++.+.+ ..+-.+-+..+ +.+.+|=-.|..-.+.....+++-=+ . ..++|+--|...+ --+..+++.|.+.
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~---g~f~s~~df~~R~~~i~~~~le~Li~a 76 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N---GPFKSLEDFIQRLPKINKRQLEALIKA 76 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C---SS-SSHHHHHHHS-TS-HHHHHHHHHT
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c---CCCCCHHHHHHHHhcCCHHHHHHHHHC
Confidence 77887743 22334555555 79999999999999998888877655 3 4588999999988 7889999999999
Q ss_pred CceeccCCChH
Q 014434 327 GIIENWLPDKE 337 (424)
Q Consensus 327 gIi~~~lg~de 337 (424)
|.+...-+++.
T Consensus 77 Gafd~~~~~~R 87 (90)
T PF14579_consen 77 GAFDSFGKSRR 87 (90)
T ss_dssp TTTTTCSSCHH
T ss_pred CCccccChhhh
Confidence 99987655443
No 10
>PRK10132 hypothetical protein; Provisional
Probab=49.13 E-value=16 Score=30.83 Aligned_cols=20 Identities=15% Similarity=0.567 Sum_probs=15.3
Q ss_pred ccccHHHHHHHHHHHHHHHHH
Q 014434 387 NTPWAGISVCGAVFLLILTVI 407 (424)
Q Consensus 387 ~npw~~is~~aA~~ll~lt~~ 407 (424)
.|||..+++. |.++++++++
T Consensus 84 ~~Pw~svgia-agvG~llG~L 103 (108)
T PRK10132 84 ERPWCSVGTA-AAVGIFIGAL 103 (108)
T ss_pred hCcHHHHHHH-HHHHHHHHHH
Confidence 4999999974 4577777776
No 11
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=47.51 E-value=35 Score=27.56 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVCSVIQVLSPPK 421 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~sv~~~~~~~~ 421 (424)
++|.++|.++-+++.++++==-+||.+.|..|.+
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~C~~~~ 76 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRKCSGSM 76 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 4677777777777777666667899998877654
No 12
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=45.12 E-value=40 Score=27.40 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=26.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCC
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVCSVI-QVLSPPK 421 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~sv~-~~~~~~~ 421 (424)
++|+++|.++-+++.++++=--+||.+ .|.+|.+
T Consensus 42 ~~wRalSii~FI~giil~lG~~i~s~ygr~C~~s~ 76 (92)
T PF05767_consen 42 YTWRALSIICFILGIILTLGIVIFSMYGRYCRPSS 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 478888888888888888877889988 5766543
No 13
>PHA03048 IMV membrane protein; Provisional
Probab=38.00 E-value=65 Score=26.17 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCC
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVCSVIQ-VLSPPK 421 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~sv~~-~~~~~~ 421 (424)
++|.++|.++-+++.++|+==-+||.+. |..|.+
T Consensus 41 ~~wRalsii~FIlgivl~lG~~ifsmy~r~C~~~~ 75 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGMLIYSMWGRYCTPSK 75 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 5788888888777777777777999999 777765
No 14
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=37.92 E-value=32 Score=28.57 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014434 392 GISVCGAVFLLILTVIQAVCSVIQVLSP 419 (424)
Q Consensus 392 ~is~~aA~~ll~lt~~QT~~sv~~~~~~ 419 (424)
.++-+.|+++.++++++|+|+-++...+
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs~~~~ 55 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFSAASR 55 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccccCCC
Confidence 3567778999999999999998876554
No 15
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=36.80 E-value=49 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=21.2
Q ss_pred cccH---HHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014434 388 TPWA---GISVCGAVFLLILTVIQAVCSVIQVLS 418 (424)
Q Consensus 388 npw~---~is~~aA~~ll~lt~~QT~~sv~~~~~ 418 (424)
+||. ++-++-+++-+|..++||+++.-...+
T Consensus 14 spWrls~I~d~Fwgi~~fI~lFF~Tl~~p~~~~~ 47 (91)
T PF10961_consen 14 SPWRLSRITDFFWGIINFIVLFFQTLFSPDSSRS 47 (91)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 5663 555666777777888999988755433
No 16
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=34.54 E-value=36 Score=27.51 Aligned_cols=20 Identities=15% Similarity=0.659 Sum_probs=14.4
Q ss_pred ccccHHHHHHHHHHHHHHHHH
Q 014434 387 NTPWAGISVCGAVFLLILTVI 407 (424)
Q Consensus 387 ~npw~~is~~aA~~ll~lt~~ 407 (424)
.|||..+++.++ ++++++++
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 599998887555 66666654
No 17
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.43 E-value=92 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHccCchhhhhhhhcccccccccHHHHHHHHHHHHH
Q 014434 363 CKGLNDHCKRTCYKWRANLKQNYFNTPWAGISVCGAVFLLI 403 (424)
Q Consensus 363 ~~~l~~y~~~r~~~w~a~l~~~yf~npw~~is~~aA~~ll~ 403 (424)
.++|++|-++.|+.- -|+-|+ ||..+..+.|+++.+
T Consensus 9 Q~~Vd~yL~a~~~~V----ER~PFr-P~~Ll~~li~Vv~gl 44 (55)
T PF11293_consen 9 QQRVDEYLQAGVNQV----ERKPFR-PWRLLIVLIVVVIGL 44 (55)
T ss_pred HHHHHHHHhCCCCcc----ccCCcc-hHHHHHHHHHHHHHH
Confidence 378999999999753 466675 898888887765443
No 18
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=33.81 E-value=61 Score=25.01 Aligned_cols=32 Identities=31% Similarity=0.701 Sum_probs=24.4
Q ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHH
Q 014434 377 WRANLKQNYFNTPWAGISVCGAVFLLILTVIQ 408 (424)
Q Consensus 377 w~a~l~~~yf~npw~~is~~aA~~ll~lt~~Q 408 (424)
|...+.-.+-+.-|.+|++++++++-++|.+-
T Consensus 20 wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 20 WLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 55555566667889999999998877777653
No 19
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=33.12 E-value=36 Score=29.81 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=36.9
Q ss_pred CcceEeeec--cCCCCCc---ccchhHHHHHHHHHHHHHH-------hc---ccHHHHHHHHHHHHHHHhccch
Q 014434 36 YTPQVVSIG--PLHHGKA---NLQFMEDHKQRYLRYFLQR-------AI---ISFDEFVQFIKLREAELRGSYA 94 (424)
Q Consensus 36 Y~P~~VSIG--PyHhg~~---~L~~mE~~K~~~~~~~l~r-------~~---~~l~~~~~~i~~~e~~~R~~Y~ 94 (424)
--|+|+||| ||+.++. ++-.+++.|.-+-.+.++- .. .+++++.++|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 458999999 8887653 2333444444333333321 11 2689999999988888887543
No 20
>PHA02898 virion envelope protein; Provisional
Probab=32.47 E-value=84 Score=25.49 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCC
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVCSVIQ-VLSPPK 421 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~sv~~-~~~~~~ 421 (424)
++|.++|.++-+++.++++==-+|+.+. |..|.+
T Consensus 42 ~~wRalSii~FIlgivl~lG~~ifs~y~r~C~~~~ 76 (92)
T PHA02898 42 SALRSISIISFILAIILILGIIFFKGYNMFCGGNT 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 4677777776666666666666788887 666543
No 21
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=29.20 E-value=93 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=25.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHh
Q 014434 385 YFNTPWAGISVCGAVFLLILTVIQAVCSVI 414 (424)
Q Consensus 385 yf~npw~~is~~aA~~ll~lt~~QT~~sv~ 414 (424)
-++||-+.+++++++++.+..+.+|+=++.
T Consensus 30 llk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 30 LLKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357899999999999999999988887664
No 22
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=29.15 E-value=1.4e+02 Score=22.27 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=31.5
Q ss_pred CChHHHHHHHH-hhccCcccCCCCccHHHHHHHHHHHccCc-----hhhhhhhhcccccccccHHHHHHHHHH
Q 014434 334 PDKEAASTLIN-NLSRGTTLLADRFYFSGLCKGLNDHCKRT-----CYKWRANLKQNYFNTPWAGISVCGAVF 400 (424)
Q Consensus 334 g~deeva~lFn-~L~~~~~~~~~~~y~~~v~~~l~~y~~~r-----~~~w~a~l~~~yf~npw~~is~~aA~~ 400 (424)
.+-+++++.|+ +...|+. =.++-+....|=.+. -..|...+ -+.|.||+..+=++||++
T Consensus 4 ~~~~~v~~~l~t~~~~GLs-------~~ev~~r~~~~G~N~l~~~~~~s~~~~~-~~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLS-------SEEVEERRKKYGPNELPEPKKKSLWRIF-LKQFKNPFIILLLIAAIL 68 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBT-------HHHHHHHHHHHSSSSTTTTTSSSHHHHH-HHHTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCCCCCCC-------HHHHHHHHHhcccccccccccCcHHHHH-HHHHHhHHHHHHHHHHHH
Confidence 35567777776 5555542 144445555553222 12333333 344688987766666654
No 23
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.22 E-value=59 Score=22.79 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-CCC
Q 014434 395 VCGAVFLLILTVIQAVCSVIQVLSPP-KKI 423 (424)
Q Consensus 395 ~~aA~~ll~lt~~QT~~sv~~~~~~~-~~~ 423 (424)
++.++.+.++.+-=|.|+++..+-|+ |++
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppSk~L 34 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPSKEL 34 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCcccc
Confidence 34445555555555678898888655 344
No 24
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=27.15 E-value=76 Score=31.17 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=40.4
Q ss_pred cCC-ChHHHHHHHHhhccCcccCCCCccHHHHHHHHHHHccCchhhhhhhhcccccccccHHHHHH
Q 014434 332 WLP-DKEAASTLINNLSRGTTLLADRFYFSGLCKGLNDHCKRTCYKWRANLKQNYFNTPWAGISVC 396 (424)
Q Consensus 332 ~lg-~deeva~lFn~L~~~~~~~~~~~y~~~v~~~l~~y~~~r~~~w~a~l~~~yf~npw~~is~~ 396 (424)
.+| +++||.++|+...+...... . ....+++|.++|+.-.--+.. ...-..|||.++..+
T Consensus 222 ~~GFT~~Ev~~ll~~~~~~~~~~~--~-~~~~~~~lk~wYdGY~F~~~~--~~~~iYNP~Svl~~l 282 (284)
T PF09820_consen 222 YFGFTEEEVETLLKYYIENLAEEQ--D-REELLEELKEWYDGYHFGESS--EGERIYNPWSVLNYL 282 (284)
T ss_pred hcCcCHHHHHHHHHHHHHHhhhcc--c-hHHHHHHHHHHcCCcccCCCC--CCCCEEChHHHHHHh
Confidence 456 88999999998866654321 2 677889999998865322111 034567999987765
No 25
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=24.68 E-value=55 Score=31.20 Aligned_cols=37 Identities=11% Similarity=0.282 Sum_probs=27.5
Q ss_pred CCCCCceeeecCchhhhcCccCCcceEeeeccCCCCCcccchhHHHHH
Q 014434 14 PLPSNCCIYRVPERLRQINEKAYTPQVVSIGPLHHGKANLQFMEDHKQ 61 (424)
Q Consensus 14 ~~~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~ 61 (424)
..+++-|++++|-. +.+|+||||-.++.-..||+|=-
T Consensus 20 ~nsp~sclv~~t~d-----------lhlalaP~yl~npl~~~i~ehld 56 (253)
T KOG4134|consen 20 ANSPESCLVCITTD-----------LHLALAPYYLANPLHALIEEHLD 56 (253)
T ss_pred hcCCcceEEEeeeh-----------eeeeecchhhcchhHHHHHHHhh
Confidence 34567789999977 37999999988765546766643
No 26
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=24.50 E-value=1.1e+02 Score=23.66 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=27.4
Q ss_pred hcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014434 381 LKQNYFNTPWAGISVCGAVFLLILTVIQAVCSVIQVLSPPKK 422 (424)
Q Consensus 381 l~~~yf~npw~~is~~aA~~ll~lt~~QT~~sv~~~~~~~~~ 422 (424)
..|+||-.---+|+.=.|+-++++.++.|+.|..-...++|+
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMlKskkKK 79 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVMLKSKKKK 79 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 357777543334555556666777889999988776665553
No 27
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=24.03 E-value=88 Score=23.08 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=17.1
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q 014434 388 TPWAGISVCGAVFLLILTVIQ 408 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~Q 408 (424)
+||.+|.++.|+++--+.++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 689999999888877776665
No 28
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=21.90 E-value=90 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVCSVIQ 415 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~sv~~ 415 (424)
+-|+.||+++|+-+++++++.|+..-..
T Consensus 14 ~~WkkiS~~va~P~v~l~~~n~y~~~~e 41 (86)
T cd00925 14 ELWKKISFYVALPAVALCMLNAYLKHKE 41 (86)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhhc
Confidence 4588899999999999999998876543
No 29
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.69 E-value=1.1e+02 Score=26.07 Aligned_cols=27 Identities=33% Similarity=0.741 Sum_probs=15.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVCSVIQV 416 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~sv~~~ 416 (424)
.||+.|++ |+++++++.+=.+.+++-+
T Consensus 39 ~pwK~I~l--a~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 39 IPWKSIAL--AVFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 46997776 4455555554444444433
No 30
>PF11662 DUF3263: Protein of unknown function (DUF3263); InterPro: IPR021678 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.73 E-value=1.3e+02 Score=23.91 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCC-------------CcchhhHHHHHHHhhCChh
Q 014434 288 RNLIAFEQRHYS-------------ENYINDYVFLIHHLVNTAK 318 (424)
Q Consensus 288 rNLiA~Eq~~~~-------------~~~vtsYv~fM~~LI~t~e 318 (424)
+-|++||...+. +---|.|-..++.||++++
T Consensus 8 ~~iL~fE~~ww~~~GaKe~aIre~fGls~~rYyq~Ln~LiD~p~ 51 (77)
T PF11662_consen 8 RAILDFERRWWRHGGAKEEAIREEFGLSPTRYYQRLNALIDDPA 51 (77)
T ss_pred HHHHHHHHHhCcCCCCcHHHHHHHHCCCHHHHHHHHHHHhCChH
Confidence 457899988764 2346899999999999986
No 31
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=20.26 E-value=1.2e+02 Score=24.57 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014434 395 VCGAVFLLILTVIQAVCSV 413 (424)
Q Consensus 395 ~~aA~~ll~lt~~QT~~sv 413 (424)
.+|++++++.+++||+-.+
T Consensus 26 ivAsvvGllVslvQA~TQi 44 (89)
T COG4794 26 IVASVVGLLVSLVQALTQI 44 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677899999999988655
Done!