Query 014434
Match_columns 424
No_of_seqs 128 out of 680
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 21.7 30 0.001 22.4 0.9 22 275-297 1-22 (38)
2 2rmf_A Urocortin, HUCN1; CRF l 16.2 40 0.0014 22.1 0.5 20 275-295 3-22 (40)
3 1v54_G Cytochrome C oxidase po 14.0 1E+02 0.0036 23.7 2.5 24 388-411 14-37 (85)
4 3s8f_C Cytochrome C oxidase po 12.1 1.6E+02 0.0056 18.6 2.5 24 394-417 7-30 (34)
5 2y69_G Cytochrome C oxidase po 11.3 1.4E+02 0.0047 23.6 2.5 24 388-411 26-49 (97)
6 1sbx_A SKI oncogene, C-SKI; wi 10.5 2E+02 0.0069 23.0 3.2 64 270-346 33-103 (106)
7 2x4i_A CAG38848, uncharacteriz 10.1 3E+02 0.01 22.3 4.2 32 317-349 29-60 (114)
8 2l8s_A Integrin alpha-1; trans 9.7 4.8E+02 0.017 18.2 4.9 6 415-420 34-39 (54)
9 2j6b_A AFV3-109; sulfolobus, c 8.9 2.9E+02 0.0099 22.2 3.6 33 316-349 26-58 (109)
10 4hw4_A Induced myeloid leukemi 8.7 3.3E+02 0.011 23.0 4.2 81 282-379 53-137 (157)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=21.66 E-value=30 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=17.2
Q ss_pred ceeEeccchhHHHHHHHHHHHhc
Q 014434 275 PKLKLQLETESLFRNLIAFEQRH 297 (424)
Q Consensus 275 P~l~id~~T~~llrNLiA~Eq~~ 297 (424)
||+.+| -|--+||||+-.....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~e 22 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKAE 22 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHHG
T ss_pred CCcchh-HHHHHHHHHHHHHHHH
Confidence 777777 7889999998765543
No 2
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=16.18 E-value=40 Score=22.08 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=16.0
Q ss_pred ceeEeccchhHHHHHHHHHHH
Q 014434 275 PKLKLQLETESLFRNLIAFEQ 295 (424)
Q Consensus 275 P~l~id~~T~~llrNLiA~Eq 295 (424)
||+.|| -|--+||||+-...
T Consensus 3 PpiSiD-LTFHlLR~miemar 22 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELAR 22 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHH
Confidence 777777 78899999987654
No 3
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=13.96 E-value=1e+02 Score=23.70 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVC 411 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~ 411 (424)
+-|+-|++++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999888888888764
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=12.11 E-value=1.6e+02 Score=18.63 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 014434 394 SVCGAVFLLILTVIQAVCSVIQVL 417 (424)
Q Consensus 394 s~~aA~~ll~lt~~QT~~sv~~~~ 417 (424)
+++++++++-+.++=+.+.++..|
T Consensus 7 GTl~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHHHeee
Confidence 566777777777887888877654
No 5
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=11.30 E-value=1.4e+02 Score=23.61 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Q 014434 388 TPWAGISVCGAVFLLILTVIQAVC 411 (424)
Q Consensus 388 npw~~is~~aA~~ll~lt~~QT~~ 411 (424)
+-|+.|++++|+=+++++.+.++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999998888888888764
No 6
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=10.49 E-value=2e+02 Score=23.03 Aligned_cols=64 Identities=30% Similarity=0.352 Sum_probs=43.7
Q ss_pred cEEeeceeEeccchhHHHHHHHHHHHhcCC--CcchhhHHHHHHHhhCChhhHHHHHHCCceeccCC-----ChHHHHHH
Q 014434 270 STLHIPKLKLQLETESLFRNLIAFEQRHYS--ENYINDYVFLIHHLVNTAKDVELLVQNGIIENWLP-----DKEAASTL 342 (424)
Q Consensus 270 G~L~IP~l~id~~T~~llrNLiA~Eq~~~~--~~~vtsYv~fM~~LI~t~eDV~lL~~~gIi~~~lg-----~deeva~l 342 (424)
..|-+|++ -+.+|+|+. +.|-+.. .-.++ +-.+++|-+++|+..|+|...-. +-+|+..+
T Consensus 33 ~rlCLPQi-----~~~~Lk~~~-l~~I~~~~~~L~I~-------~~~Ct~eQl~~Lk~~g~ip~~a~~CgLItk~DaerL 99 (106)
T 1sbx_A 33 KRLCLPQI-----LNSVLRDFS-LQQINAVCDELHIY-------CSRCTADQLEILKVMGILPFSAPSCGLITKTDAERL 99 (106)
T ss_dssp EEEEHHHH-----HTTTTTTSC-HHHHHHHHHHTTCC-------CEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHH
T ss_pred EEEehHHH-----HHHHHHhCC-HHHHHHHHHHhCcc-------cccCCHHHHHHHHHcCccCCCCcccCceeHHHHHHH
Confidence 47888887 566777766 5555443 11222 23689999999999999997643 45666677
Q ss_pred HHhh
Q 014434 343 INNL 346 (424)
Q Consensus 343 Fn~L 346 (424)
.+.+
T Consensus 100 ~~~l 103 (106)
T 1sbx_A 100 CNAL 103 (106)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 7
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=10.14 E-value=3e+02 Score=22.30 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=24.7
Q ss_pred hhhHHHHHHCCceeccCCChHHHHHHHHhhccC
Q 014434 317 AKDVELLVQNGIIENWLPDKEAASTLINNLSRG 349 (424)
Q Consensus 317 ~eDV~lL~~~gIi~~~lg~deeva~lFn~L~~~ 349 (424)
.++++.+..++=+++.-|. +++|++.++||.-
T Consensus 29 ~~EAk~~v~~~~~iSaIGH-~sTA~lls~Llg~ 60 (114)
T 2x4i_A 29 RLEFCENIDNEDIINSIGH-DSTIQLINSLCGT 60 (114)
T ss_dssp HHHHHHHHCCTTEEECCCC-HHHHHHHHHHHCC
T ss_pred HHHHHHHhcccCeEEeecc-HHHHHHHHHHhCC
Confidence 5677777777777788776 4689999999963
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.66 E-value=4.8e+02 Score=18.18 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.8
Q ss_pred hccCCC
Q 014434 415 QVLSPP 420 (424)
Q Consensus 415 ~~~~~~ 420 (424)
.+++++
T Consensus 34 GFFKR~ 39 (54)
T 2l8s_A 34 GFFKRP 39 (54)
T ss_dssp HHTTSC
T ss_pred CcccCC
Confidence 445544
No 9
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=8.88 E-value=2.9e+02 Score=22.21 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.8
Q ss_pred ChhhHHHHHHCCceeccCCChHHHHHHHHhhccC
Q 014434 316 TAKDVELLVQNGIIENWLPDKEAASTLINNLSRG 349 (424)
Q Consensus 316 t~eDV~lL~~~gIi~~~lg~deeva~lFn~L~~~ 349 (424)
|.++++.+..++-+++.-|. ++.|++.++||.-
T Consensus 26 s~~Ea~~~l~~~~~vSaIGH-~sTA~lls~Llg~ 58 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSAIGH-QATAELLSSILGV 58 (109)
T ss_dssp CHHHHHHHHHHSCEEECBCS-HHHHHHHHHHHTS
T ss_pred CHHHHHHHhcccceEEeecc-HHHHHHHHHHhCC
Confidence 45677777666677777776 5689999999963
No 10
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=8.68 E-value=3.3e+02 Score=23.03 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHHhcCC-CcchhhHHHHHHHhhCChhhHHHHHHCCceeccCCChHHHHHHHH---hhccCcccCCCCc
Q 014434 282 ETESLFRNLIAFEQRHYS-ENYINDYVFLIHHLVNTAKDVELLVQNGIIENWLPDKEAASTLIN---NLSRGTTLLADRF 357 (424)
Q Consensus 282 ~T~~llrNLiA~Eq~~~~-~~~vtsYv~fM~~LI~t~eDV~lL~~~gIi~~~lg~deeva~lFn---~L~~~~~~~~~~~ 357 (424)
.-...|.||. +|.+.. ...+.+|...|+.|.. .|| .|| .-|+.||. .||+.+.-...+.
T Consensus 53 ~~~~~f~~m~--~~L~it~~~a~~~F~~Va~elF~----------dGi-~NW----GRIVaLfaFgg~la~~~~~~~~~~ 115 (157)
T 4hw4_A 53 NHETAFQGML--RKLDIKNEDDVKSLSRVMIHVFS----------DGV-TNW----GRIVTLISFGAFVAKHLKTINQES 115 (157)
T ss_dssp HTHHHHHHHH--HHHCCCSHHHHHHHHHHHHHHGG----------GSC-CCH----HHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHH--HhcCCCCchHHHHHHHHHHHHhc----------cCC-ccH----HHHHHHHHHHHHHHHHHHHcCchh
Confidence 3456788877 465544 3445567777776663 355 344 56777775 7776553211234
Q ss_pred cHHHHHHHHHHHccCchhhhhh
Q 014434 358 YFSGLCKGLNDHCKRTCYKWRA 379 (424)
Q Consensus 358 y~~~v~~~l~~y~~~r~~~w~a 379 (424)
+...+.+-+-+|-..+-..|+.
T Consensus 116 ~v~~l~~~i~~~l~~~l~~WI~ 137 (157)
T 4hw4_A 116 CIEPLAESITDVLVRTKRDWLV 137 (157)
T ss_dssp GHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 5678888888887776666653
Done!