Query 014434
Match_columns 424
No_of_seqs 128 out of 680
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 11:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 35.8 16 0.0012 27.2 3.8 52 58-109 3-77 (97)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 31.6 26 0.0019 19.1 3.2 22 401-422 5-26 (27)
3 d1v54g_ f.23.2.1 (G:) Mitochon 19.3 30 0.0022 24.9 2.5 23 389-411 15-37 (84)
4 d2i4ra1 c.149.1.1 (A:4-79) V-t 16.1 32 0.0023 24.0 2.0 23 22-44 54-76 (76)
5 d1f16a_ f.1.4.1 (A:) Proapopto 12.3 1.1E+02 0.008 24.9 4.7 37 358-395 132-175 (192)
6 d1awca_ a.4.5.21 (A:) GA bindi 11.6 92 0.0067 23.3 3.5 62 333-399 31-94 (110)
7 d1u9pa1 a.43.1.1 (A:72-107) Ar 11.2 29 0.0021 20.2 0.3 30 338-367 2-31 (36)
8 d2outa1 a.140.3.2 (A:94-131) U 10.8 34 0.0024 19.9 0.5 16 245-260 6-21 (38)
9 d1sbxa_ a.6.1.4 (A:) Ski oncog 10.5 98 0.0072 22.9 3.3 63 271-346 34-103 (106)
10 d1v8ca2 d.129.5.1 (A:88-165) M 10.4 47 0.0034 22.5 1.3 24 269-293 48-74 (78)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.75 E-value=16 Score=27.15 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcc-----cHHHHHHHHHH---------------HHHHHhccchhc---cCCChHHHHHHHH
Q 014434 58 DHKQRYLRYFLQRAII-----SFDEFVQFIKL---------------REAELRGSYAEK---IELSSDKFVEMIL 109 (424)
Q Consensus 58 ~~K~~~~~~~l~r~~~-----~l~~~~~~i~~---------------~e~~~R~~Y~~~---~~~~~~ef~~Mml 109 (424)
+.|+||+=..+...+. .++.++..+.. +|..+|+|+... -+++.++|+..|.
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 4589999888875532 24444443322 467788888532 2577777766554
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=31.61 E-value=26 Score=19.14 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCC
Q 014434 401 LLILTVIQAVCSVIQVLSPPKK 422 (424)
Q Consensus 401 ll~lt~~QT~~sv~~~~~~~~~ 422 (424)
+.+.|+-..+|+.++-|++|..
T Consensus 5 li~~tl~glf~aayqqykrpne 26 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYKRPNE 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCC
T ss_pred ehHHHHHHHHHHHHHHhcCCCC
Confidence 3455777788888887776653
No 3
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.34 E-value=30 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 014434 389 PWAGISVCGAVFLLILTVIQAVC 411 (424)
Q Consensus 389 pw~~is~~aA~~ll~lt~~QT~~ 411 (424)
-|+.|++++|+-+++++++.++.
T Consensus 15 lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 48889999999999988888763
No 4
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=16.14 E-value=32 Score=23.96 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.8
Q ss_pred eecCchhhhcCccCCcceEeeec
Q 014434 22 YRVPERLRQINEKAYTPQVVSIG 44 (424)
Q Consensus 22 ~rVP~~lr~~n~~aY~P~~VSIG 44 (424)
-++|+.+++.-.+.-.|.++.||
T Consensus 54 ~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 54 KKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp TTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHhhHHHHHHHhcCCCCEEEecC
Confidence 46788888887888999999998
No 5
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.27 E-value=1.1e+02 Score=24.91 Aligned_cols=37 Identities=19% Similarity=0.457 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHccCchhhhh------hhhcccccccc-cHHHHH
Q 014434 358 YFSGLCKGLNDHCKRTCYKWR------ANLKQNYFNTP-WAGISV 395 (424)
Q Consensus 358 y~~~v~~~l~~y~~~r~~~w~------a~l~~~yf~np-w~~is~ 395 (424)
+...+++-+-+|-..+-..|+ .. ..+||.+| |..+++
T Consensus 132 ~v~~i~~~~~~fl~~~l~~WI~~~GGW~g-~~~~f~~~~w~~~~~ 175 (192)
T d1f16a_ 132 LIRTIMGWTLDFLRERLLGWIQDQGGWDG-LLSYFGTPTWQTVTI 175 (192)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHTCSTHH-HHHHCCCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHCCCHHH-HHHHcCCCchHHHHH
Confidence 345555555555444333332 12 24556555 555444
No 6
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.62 E-value=92 Score=23.26 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHhhccCcccCCCCccHHHHHHHHHHHccCchh-hhh-hhhcccccccccHHHHHHHHH
Q 014434 333 LPDKEAASTLINNLSRGTTLLADRFYFSGLCKGLNDHCKRTCY-KWR-ANLKQNYFNTPWAGISVCGAV 399 (424)
Q Consensus 333 lg~deeva~lFn~L~~~~~~~~~~~y~~~v~~~l~~y~~~r~~-~w~-a~l~~~yf~npw~~is~~aA~ 399 (424)
+-+.++||+++-.- |+- . +-+ |.++...+..||++.-- +.. ..+.+.|..+||..++.-++-
T Consensus 31 l~d~e~VA~lWG~~-Knk-~--~M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~ 94 (110)
T d1awca_ 31 LNQPELVAQKWGQR-KNK-P--TMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAE 94 (110)
T ss_dssp CSSHHHHHHHHHHH-HTC-T--TCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHH
T ss_pred eCCHHHHHHHHHHh-hCC-C--ccc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHH
Confidence 34678999999543 432 1 345 99999999999987632 222 357788999999877655443
No 7
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=11.21 E-value=29 Score=20.17 Aligned_cols=30 Identities=3% Similarity=0.123 Sum_probs=20.5
Q ss_pred HHHHHHHhhccCcccCCCCccHHHHHHHHH
Q 014434 338 AASTLINNLSRGTTLLADRFYFSGLCKGLN 367 (424)
Q Consensus 338 eva~lFn~L~~~~~~~~~~~y~~~v~~~l~ 367 (424)
||.++.+..+.+...+.++..|..+++.+.
T Consensus 2 evldlvrkvaeeng~s~ns~iy~~vmes~k 31 (36)
T d1u9pa1 2 EVLDLVRKVAEENGRSVNSEIYQRVMESFK 31 (36)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 677888888776555445666777776654
No 8
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=10.81 E-value=34 Score=19.94 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=12.5
Q ss_pred HHHHHcCcEEEecCCC
Q 014434 245 TDLHQAGVRFSLSKSN 260 (424)
Q Consensus 245 teL~~aGVkfk~~~~~ 260 (424)
.+|-+.||.||.+.+.
T Consensus 6 aqltergitfkqsatk 21 (38)
T d2outa1 6 AQLTERGITFKQSATK 21 (38)
T ss_dssp HHHHHHTCCCSSSCCS
T ss_pred HHHHHcCceeeccchh
Confidence 4688999999987553
No 9
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.49 E-value=98 Score=22.92 Aligned_cols=63 Identities=30% Similarity=0.373 Sum_probs=42.4
Q ss_pred EEeeceeEeccchhHHHHHHHHHHHhcCC--CcchhhHHHHHHHhhCChhhHHHHHHCCceeccCC-----ChHHHHHHH
Q 014434 271 TLHIPKLKLQLETESLFRNLIAFEQRHYS--ENYINDYVFLIHHLVNTAKDVELLVQNGIIENWLP-----DKEAASTLI 343 (424)
Q Consensus 271 ~L~IP~l~id~~T~~llrNLiA~Eq~~~~--~~~vtsYv~fM~~LI~t~eDV~lL~~~gIi~~~lg-----~deeva~lF 343 (424)
.|.+|++ -+.+|+|+ .+.|-+.. .-.++ +..+|++-+++|+..|+|...-. +.+|+..+.
T Consensus 34 rlCLpQi-----~~~vLk~~-s~~~I~~~~~~L~I~-------~~~Ct~eQL~~Lk~~gaip~~~~~C~LItk~DaErL~ 100 (106)
T d1sbxa_ 34 RLCLPQI-----LNSVLRDF-SLQQINAVCDELHIY-------CSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLC 100 (106)
T ss_dssp EEEHHHH-----HTTTTTTS-CHHHHHHHHHHTTCC-------CEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHHH
T ss_pred EEEhHHH-----HHHHHhhC-CHHHHHHHHHHhCce-------eccCCHHHHHHHHHcCCCCCCCCcccceeHHHHHHHH
Confidence 5677776 56677776 66666543 11221 23589999999999999997643 466666776
Q ss_pred Hhh
Q 014434 344 NNL 346 (424)
Q Consensus 344 n~L 346 (424)
+.+
T Consensus 101 ~~l 103 (106)
T d1sbxa_ 101 NAL 103 (106)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 10
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.41 E-value=47 Score=22.50 Aligned_cols=24 Identities=42% Similarity=0.722 Sum_probs=15.9
Q ss_pred CcEEeeceeEec---cchhHHHHHHHHH
Q 014434 269 NSTLHIPKLKLQ---LETESLFRNLIAF 293 (424)
Q Consensus 269 ~G~L~IP~l~id---~~T~~llrNLiA~ 293 (424)
-|.|+||+|.+. +..++++-- |||
T Consensus 48 vgsl~ip~lrvevege~ae~w~~r-ia~ 74 (78)
T d1v8ca2 48 VGSLSIPQLRVEVEGEEAERWFER-IAF 74 (78)
T ss_dssp ETTEEEEEEEEEEEETTHHHHHHH-HHH
T ss_pred ecceecceEEEEeccHHHHHHHHH-HHh
Confidence 389999999986 344555533 444
Done!