BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014435
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 232/435 (53%), Gaps = 49/435 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
++S I +++ +F LG+ + DVV++ PN F + FL GA A+ ANP +T
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 144
+E++KQ K SN KL+IT DK+K L N V++ D F +L
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTEL 206
Query: 145 IELSGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
+ + +++ D V + D AL YSSGTTG+ KGV+LTHK L+ S Q++ GE
Sbjct: 207 TQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGE 261
Query: 204 -------LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
D V+LCVLPMFH++ L+ I+ L+ G ++ M KF+I + L I++ +VTV
Sbjct: 262 NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTV 321
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
+VPPI+LA+AK+S K+D+SS+++V SGAAPLGKEL + P A + QGYGMTE
Sbjct: 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381
Query: 317 TCAPISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
+++ + P +SG+ GT+V E +IV DT L NQ GEI +RG +
Sbjct: 382 AGPVLAMSLGFAKEPF--PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439
Query: 372 TPVF-----------------------ELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELE 408
+ + + LF R + + K FQVAPAELE
Sbjct: 440 MKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY--KGFQVAPAELE 497
Query: 409 GLLVSHPEILDAVVI 423
LL+ HP+I D V+
Sbjct: 498 ALLIGHPDITDVAVV 512
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 217/419 (51%), Gaps = 45/419 (10%)
Query: 36 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
+V+ +GI + DV+++F P+S F + FLG GAI + ANP T +EL+K K S
Sbjct: 61 RVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKAS 120
Query: 96 NPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP 155
KL+IT ++KVKD + F +L + + P
Sbjct: 121 RAKLLITQACYYEKVKDF-------ARESDVKVMCVDSAPDGCLHFSELTQ--ADENEAP 171
Query: 156 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLP 213
V + D AL YSSGTTG+ KGV+LTHK I A + + L + V+LCVLP
Sbjct: 172 QVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231
Query: 214 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 273
MFH++ L+ I+ L+ G ++ M KF+I L IEKY+V++ VVPP+++++AK+ +
Sbjct: 232 MFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL 291
Query: 274 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET------CAPISLENPL 327
K D+SSL+++ SG APLGKEL + + P A + QGYGMTE C + E
Sbjct: 292 DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFD 351
Query: 328 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTVNC-- 381
+ + G+ GT+V E +IV +T LP NQ GEI +RG + + E T
Sbjct: 352 I---KPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408
Query: 382 -----------------NLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAVVI 423
LF R + + K FQVAPAELE LL++HPEI DA V+
Sbjct: 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY--KGFQVAPAELEALLIAHPEISDAAVV 465
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 205/429 (47%), Gaps = 43/429 (10%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+++ + + ++++ + + G+ +++ + NS+ F + LG + IG + AN +Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
EL + S P +V + K+ ++ LP + ++ SK
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
E +P+ + A ++ SSG+TG+ KGV L H+ A A
Sbjct: 177 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRT--ACVRFSHARDP 230
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
+ G D +L V+P H FG+ L L G VV M +F+ E+ LR+++ Y++
Sbjct: 231 IFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQS 289
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
+VP + AK++L+ K+D+S+L + SG APL KE+ E K I QGYG+TE
Sbjct: 290 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
T + I L P G + G+ G +V EA++V +DT K L NQ GE+ VRGP + +
Sbjct: 350 TTSAI-LITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYV 407
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
E T ++ +Y+ ++H FF K +QVAPAELE +L+
Sbjct: 408 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGYQVAPAELESILLQ 465
Query: 414 HPEILDAVV 422
HP I DA V
Sbjct: 466 HPNIFDAGV 474
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 205/429 (47%), Gaps = 43/429 (10%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+++ + + ++++ + + G+ +++ + NS+ F + LG + IG + AN +Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
EL + S P +V + K+ ++ LP + ++ SK
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
E +P+ + A ++ SSG+TG+ KGV L H+ A A
Sbjct: 172 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRT--ACVRFSHARDP 225
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
+ G D +L V+P H FG+ L L G VV M +F+ E+ LR+++ Y++
Sbjct: 226 IFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
+VP + AK++L+ K+D+S+L + SG APL KE+ E K I QGYG+TE
Sbjct: 285 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
T + I L P G + G+ G +V EA++V +DT K L NQ GE+ VRGP + +
Sbjct: 345 TTSAI-LITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYV 402
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
E T ++ +Y+ ++H FF K +QVAPAELE +L+
Sbjct: 403 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 414 HPEILDAVV 422
HP I DA V
Sbjct: 461 HPNIFDAGV 469
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 205/429 (47%), Gaps = 43/429 (10%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+++ + + ++++ + + G+ +++ + NS+ F + LG + IG + AN +Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
EL + S P +V + K+ ++ LP + ++ SK
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
E +P+ + A ++ SSG+TG+ KGV L H+ A A
Sbjct: 172 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRT--ACVRFSHARDP 225
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
+ G D +L V+P H FG+ L L G VV M +F+ E+ LR+++ Y++
Sbjct: 226 IFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
+VP + AK++L+ K+D+S+L + SG APL KE+ E K I QGYG+TE
Sbjct: 285 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
T + I L P G + G+ G +V EA++V +DT K L NQ GE+ VRGP + +
Sbjct: 345 TTSAI-LITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYV 402
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
E T ++ +Y+ ++H FF K +QVAPAELE +L+
Sbjct: 403 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 414 HPEILDAVV 422
HP I DA V
Sbjct: 461 HPNIFDAGV 469
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 204/429 (47%), Gaps = 43/429 (10%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+++ + + ++++ + + G+ +++ + NS+ F + LG + IG + AN Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLN--LPAV----LLGSKDXXXXXXXXXXXXXXX 139
EL + S P +V + K+ ++ LP + ++ SK
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
E +P+ + A ++ SSG+TG+ KGV L H+ A A
Sbjct: 177 LPPGFNEYDF----VPESFDRDKTIALIMNSSGSTGLPKGVALPHRAL--AVRFSHARDP 230
Query: 200 LVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 256
+ G D +L V+P H FG+ L L G VV M +F+ E+ LR+++ Y++
Sbjct: 231 IFGNQIAPDTAILSVVPFHHGFGMFTTL-GYLISGFRVVLMYRFEEELFLRSLQDYKIQS 289
Query: 257 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTE 316
+VP + LAK++L+ K+D+S+L + SG APL KE+ E K I QGYG+TE
Sbjct: 290 ALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 317 TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF- 375
T + I L P G + G+ G +V EA++V +DT K L NQ GE+ VRGP + +
Sbjct: 350 TTSAI-LITP-KGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYV 407
Query: 376 ---ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLVS 413
E T ++ +Y+ ++H FF K QVAPAELE +L+
Sbjct: 408 NNPEATNALIDKDGWLHSGDIAYWDEDEH--FFIVDRLKSLIKYKGCQVAPAELESILLQ 465
Query: 414 HPEILDAVV 422
HP I DA V
Sbjct: 466 HPNIFDAGV 474
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 205/436 (47%), Gaps = 56/436 (12%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPVY 83
++S + + +++ + + G+ + + + + NS+ F P+C G + IG + N +Y
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVC--GALFIGVGVAPTNDIY 143
Query: 84 TVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPA----VLLGSKDXXXXXXXXXXXXX 137
EL + S P +V K+ + LP V+L S++
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQS------ 197
Query: 138 XXXFHDLIE--LSGSVTD---IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 192
+ IE L + IPD ++T A ++ SSG+TG+ KGV LTHKN
Sbjct: 198 ---MYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVR-- 252
Query: 193 MISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 249
+ G D +L V+P H FG+ L L G +V M +F+ E+ LR++
Sbjct: 253 FSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSL 311
Query: 250 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 309
+ Y++ +VP + AK++LV K+D+S+L + SG APL KE+ E K I
Sbjct: 312 QDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIR 371
Query: 310 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 369
QGYG+TET + I + P + G+ G +V A+IV +DT K L NQ GE+ V+GP
Sbjct: 372 QGYGLTETTSAIII-TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGP 430
Query: 370 NVTPVF----ELT---------VNCNLFSYFRSNDHNDFFC----------KLFQVAPAE 406
+ + E T ++ +Y+ + + FF K +QV PAE
Sbjct: 431 MIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGY--FFIVDRLKSLIKYKGYQVPPAE 488
Query: 407 LEGLLVSHPEILDAVV 422
LE +L+ HP I DA V
Sbjct: 489 LESILLQHPFIFDAGV 504
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 198/430 (46%), Gaps = 41/430 (9%)
Query: 24 DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 83
D S++ + + + ++ G+ + + + N F I + + IG + N +Y
Sbjct: 52 DYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111
Query: 84 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHD 143
T+ EL + S P +V + + DKV + + + F
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171
Query: 144 LIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----FIAASLMISAH 197
G + V V + + AL+ SSG+TG+ KGV LTH+N F A I +
Sbjct: 172 RNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
Q G VL V+P H FG+ L L G VV + KFD E L+ ++ Y+ T
Sbjct: 232 QVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDYKCTSV 287
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMT 315
+VP + L K+ L+ K+D+S+L + SG APL KE+ E + N+PG + QGYG+T
Sbjct: 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLT 345
Query: 316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
ET + I + G + G++G +V +A+++ +DT K L PN+ GE+ V+GP + +
Sbjct: 346 ETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 376 -------------ELTVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLV 412
E ++ Y+ H FF K +QV PAELE +L+
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKH--FFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 413 SHPEILDAVV 422
HP I DA V
Sbjct: 462 QHPSIFDAGV 471
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 198/430 (46%), Gaps = 41/430 (9%)
Query: 24 DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 83
D S++ + + + ++ G+ + + + N F I + + IG + N +Y
Sbjct: 52 DYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111
Query: 84 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHD 143
T+ EL + S P +V + + DKV + + + F
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171
Query: 144 LIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----FIAASLMISAH 197
G + V V + + AL+ SSG+TG+ KGV LTH+N F A I +
Sbjct: 172 RNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
Q G VL V+P H FG+ L L G VV + KFD E L+ ++ Y+ T
Sbjct: 232 QVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDYKCTSV 287
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMT 315
+VP + L K+ L+ K+D+S+L + SG APL KE+ E + N+PG + QGYG+T
Sbjct: 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLT 345
Query: 316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
ET + I + G + G++G +V +A+++ +DT K L PN+ GE+ V+GP + +
Sbjct: 346 ETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 376 -------------ELTVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLV 412
E ++ Y+ H FF K +QV PAELE +L+
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKH--FFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 413 SHPEILDAVV 422
HP I DA V
Sbjct: 462 QHPSIFDAGV 471
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 198/430 (46%), Gaps = 41/430 (9%)
Query: 24 DPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 83
D S++ + + + ++ G+ + + + N F I + + IG + N +Y
Sbjct: 52 DYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111
Query: 84 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHD 143
T+ EL + S P +V + + DKV + + + F
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171
Query: 144 LIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----FIAASLMISAH 197
G + V V + + AL+ SSG+TG+ KGV LTH+N F A I +
Sbjct: 172 RNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
Q G VL V+P H FG+ L L G VV + KFD E L+ ++ Y+ T
Sbjct: 232 QVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDYKCTNV 287
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMT 315
+VP + L K+ L+ K+D+S+L + SG APL KE+ E + N+PG + QGYG+T
Sbjct: 288 ILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLT 345
Query: 316 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF 375
ET + I + G + G++G +V +A+++ +DT K L PN+ GE+ V+GP + +
Sbjct: 346 ETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 376 -------------ELTVNCNLFSYFRSNDHNDFFC----------KLFQVAPAELEGLLV 412
E ++ Y+ H FF K +QV PAELE +L+
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKH--FFIVDRLKSLIKYKGYQVPPAELESVLL 461
Query: 413 SHPEILDAVV 422
HP I DA V
Sbjct: 462 QHPSIFDAGV 471
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 178/443 (40%), Gaps = 55/443 (12%)
Query: 18 PLVLPSDPSFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 77
P P +F + K++ G+ K + V + PNSI + + + A
Sbjct: 46 PSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPV 105
Query: 78 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXX 137
NP Y EL + DS ++ L++ N VL
Sbjct: 106 PINPXYKSFELEHILNDSEATTLVVHSXLYE-----NFKPVL-------EKTGVERVFVV 153
Query: 138 XXXFHDLIELSGSVT-DIPDVSVK-QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 195
+ L E+ S + D +V V + D A + Y+ GTTG KGV LTH N A +L ++
Sbjct: 154 GGEVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLA 213
Query: 196 AHQELVGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
L D +V C P FH FGL + + GN V G F+ E IEKY+
Sbjct: 214 VATGL-SHXDTIVGCX-PXFHSAEFGLVNL---XVTVGNEYVVXGXFNQEXLAENIEKYK 268
Query: 254 VTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQK------NIPG 305
T W VPP + L S + +D S LK+ +GA P+ L+E K N P
Sbjct: 269 GTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR 328
Query: 306 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 365
Q +G TE C P NP + + +S + G + +E +++S++ + L + GEI
Sbjct: 329 LRHNQIWGXTEAC-PXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIV 387
Query: 366 VRGPNVTPVFELTVNCNLFSYFRSNDHNDFF-------------------------CKLF 400
+RGPN+ + N ++ FF K +
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGY 447
Query: 401 QVAPAELEGLLVSHPEILDAVVI 423
+AP ELE LL H + D VI
Sbjct: 448 TIAPFELEALLXKHEAVXDVAVI 470
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 149/354 (42%), Gaps = 34/354 (9%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S++ + +V++ G+ D V S+ + +L + G + N YT+
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
EL + D+ PK+V+ P D + + A +G+
Sbjct: 90 HELDYFITDAEPKIVVCDPSKRDGIAAI---AAKVGATVETLGP---------------- 130
Query: 146 ELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH 197
+ GS+TD + D AA+LY+SGTTG SKG L+H N + SL + +
Sbjct: 131 DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDY 190
Query: 198 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 257
D V++ LP++H GL V L + + KFD + L R TV
Sbjct: 191 WRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVL 246
Query: 258 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET 317
VP L ++ + K +L SG+APL + + G + + YG TET
Sbjct: 247 XGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKT-GHAVLERYGXTET 305
Query: 318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
S NP G R G+ G + GV A++ +T K LP +G I V+GPNV
Sbjct: 306 NXNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNV 357
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 177/426 (41%), Gaps = 54/426 (12%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+++ ++ + + LGI K D V + PNS+ F F G +GA+A N
Sbjct: 45 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 104
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
E+S + DS K+VI G+ D I
Sbjct: 105 PEVSFILSDSGSKVVI------------------YGAPSAPVIDAIRAQADPPGTVTDWI 146
Query: 146 -------ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
L + D P V D ++Y+SGTTG KGV+ TH++ +A+ ++
Sbjct: 147 GADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 206
Query: 199 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
++ +L LPMFHV L+ +++ + +G ++SM +FD I + RV +
Sbjct: 207 DV--RYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGG 263
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME-DCQKNIPGATIFQGYGMTET 317
VP I+ + + + D + +G AP+ + L++ KNI + QGY +TE+
Sbjct: 264 AVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTES 320
Query: 318 CAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF-- 375
C +L +R++GSAG + + D + + + GE+ ++ + +
Sbjct: 321 CGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWN 378
Query: 376 --ELTVNCNLFSYFRSNDHNDFFCKLF----------------QVAPAELEGLLVSHPEI 417
E T + +FR+ D + + + V PAE+E +++ P +
Sbjct: 379 RPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGV 438
Query: 418 LDAVVI 423
+ VI
Sbjct: 439 SEVAVI 444
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 32/320 (10%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+++ ++ + + LGI K D V + PNS+ F F G +GA+A N
Sbjct: 31 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
E+S + DS K+VI G+ D I
Sbjct: 91 PEVSFILSDSGSKVVI------------------YGAPSAPVIDAIRAQADPPGTVTDWI 132
Query: 146 -------ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 198
L + D P V D ++Y+SGTTG KGV+ TH++ +A+ ++
Sbjct: 133 GADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 192
Query: 199 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
++ +L LPMFHV L+ +++ + +G ++SM +FD I + RV +
Sbjct: 193 DV--RYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGG 249
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME-DCQKNIPGATIFQGYGMTET 317
VP I+ + + + D + +G AP+ + L++ KNI + QGY +TE+
Sbjct: 250 AVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTES 306
Query: 318 CAPISLENPLVGVRRSGSAG 337
C +L +R++GSAG
Sbjct: 307 CGGGTLLLSEDALRKAGSAG 326
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 146/358 (40%), Gaps = 42/358 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S++ + +V++ G+ D V S+ + +L + G + N YT+
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXXXXXXXXXXF 141
EL + D+ P +V+ P D + + LG
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG----------------- 132
Query: 142 HDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 193
GS+TD + D AA+LY+SGTTG S G +L+H N + SL
Sbjct: 133 ------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLT 186
Query: 194 ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
+ + D V++ LP++H GL V L ++ + FD + L + R
Sbjct: 187 LVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--R 242
Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
TV VP L ++ + ++L SG+APL + + G + + YG
Sbjct: 243 ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT-GHAVLERYG 301
Query: 314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
MTET ++ NP G R G+ G + GV A++ +T LP +G I V GPNV
Sbjct: 302 MTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 146/358 (40%), Gaps = 42/358 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S++ + +V++ G+ D V S+ + +L + G + N YT+
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXXXXXXXXXXF 141
EL + D+ P +V+ P D + + LG
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG----------------- 132
Query: 142 HDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 193
GS+TD + D AA+LY+SGTTG S G +L+H N + SL
Sbjct: 133 ------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLT 186
Query: 194 ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
+ + D V++ LP++H GL V L ++ + FD + L + R
Sbjct: 187 LVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--R 242
Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
TV VP L ++ + ++L SG+APL + + G + + YG
Sbjct: 243 ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT-GHAVLERYG 301
Query: 314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
MTET ++ NP G R G+ G + GV A++ +T LP +G I V GPNV
Sbjct: 302 MTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 147/358 (41%), Gaps = 42/358 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S++ + +V++ G+ D V S+ + +L + G + N YT+
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXXXXXXXXXXF 141
EL + D+ P +V+ P D + + LG
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP------------------- 130
Query: 142 HDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 193
+ GS+TD + D AA+LY+SGTTG S G +L+H N + SL
Sbjct: 131 ----DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLT 186
Query: 194 ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 253
+ + D V++ LP++H GL V L ++ + FD + L + R
Sbjct: 187 LVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--R 242
Query: 254 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 313
TV VP L ++ + ++L SG+APL + + G + + YG
Sbjct: 243 ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXT-GHAVLERYG 301
Query: 314 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 371
MTET ++ NP G R G+ G + GV A++ +T LP +G I V GPNV
Sbjct: 302 MTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNV 357
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 159/374 (42%), Gaps = 67/374 (17%)
Query: 80 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 139
NP EL+ + DS P LV+ P D LP L G+ +
Sbjct: 99 NPKSGDKELAHILSDSAPSLVLAPP-------DAELPPAL-GALERVDVD---------- 140
Query: 140 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 199
+ G+V P+ D A ++Y+SGTTG KG ++ + ++ +
Sbjct: 141 -----VRARGAV---PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 200 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 259
GE V++ LP+FHV GL + + L++G V +G+F E A R + T+ +
Sbjct: 193 WTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFG 249
Query: 260 VPPIILALAKN-----SLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGY 312
VP + +A+ L + + L + GS A P+ D ++ G + + Y
Sbjct: 250 VPTMYHRIAETLPADPELAKALAGARLLVSGSAALPV-----HDHERIAAATGRRVIERY 304
Query: 313 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT--LKPLPPNQLGEIWVRGPN 370
GMTET S+ G R+G+ G + GVE ++V D + L +GEI VRGPN
Sbjct: 305 GMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPN 362
Query: 371 VTPVF--ELTVNCNLFS---YFRSND----HNDFFCKL-------------FQVAPAELE 408
+ + F+ +FR+ D D + ++ +++ E+E
Sbjct: 363 LFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIE 422
Query: 409 GLLVSHPEILDAVV 422
L+ HPE+ +A V
Sbjct: 423 NALLEHPEVREAAV 436
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 172/404 (42%), Gaps = 49/404 (12%)
Query: 45 GITKKDVVLIFAPNSIHFPICFLGVIA-IGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
G+ D V I + N I +G +A IGAI N E++ + D P +V+
Sbjct: 52 GVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAG 110
Query: 104 PELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTD 163
+ D V + LP+ L G K F DL S T D
Sbjct: 111 TDYRDIVAGV-LPS-LGGVK---KAYAIGDGSGPFAPFKDL----ASDTPFSAPEFGAAD 161
Query: 164 AAALLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 222
+++++ G +G +++ N IA S ++ A + + E D V L +LP+FHV GL +
Sbjct: 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR--LTEAD-VNLGMLPLFHVTGLGL 218
Query: 223 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 282
+L Q Q G V KFD A R IE ++VTV P++ + + + ++SL+
Sbjct: 219 MLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ--LASLR 275
Query: 283 LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG 342
V P E +E + P AT + +G +ET +S P R SAG +
Sbjct: 276 AVTGLDTP---ETIERFEATCPNATFWATFGQSETSG-LSTFAPYR--DRPKSAGRPLFW 329
Query: 343 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHN-------DF 395
+V + +PLPP ++GEI +RGP V + + FR+ H+ D
Sbjct: 330 RTVAVVDAED-RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHA-FRNGWHHTGDMGRFDA 387
Query: 396 FCKLF----------------QVAPAELEGLLVSHPEILDAVVI 423
LF V PAE+EG L HP I DAVVI
Sbjct: 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVI 431
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 163/351 (46%), Gaps = 30/351 (8%)
Query: 30 FKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI----CFLGVIAIGAIASTANPVYTV 85
++++ + S + L ++ V ++ NSI I C+L I I I + P
Sbjct: 29 YQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTP---- 84
Query: 86 SELSKQVKDSNPKLVI-TVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXX-XXXXXFHD 143
+E++ Q++ + +L+ T+P + ++L + +D ++
Sbjct: 85 NEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNE 144
Query: 144 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
+ S ++I + S D A+++++SGTTG K V T +N A++ I + L +
Sbjct: 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASA--IGCKESLGFD 202
Query: 204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 263
D L VLP++H+ GLSV+L ++ G V + KF+ E L I+ R+T +VP
Sbjct: 203 RDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQT 261
Query: 264 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQGYGMTETCAPIS 322
+ L + L +++ + L G A L ++E Q N+P I+ +GMTETC+
Sbjct: 262 LNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP---IYNSFGMTETCSQFL 315
Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--LGEIWVRGPNV 371
P + R + G A V+ +I + PN+ GE+ ++G NV
Sbjct: 316 TATPEMLHARPDTVGMPSANVDVKIKN--------PNKEGHGELMIKGANV 358
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/427 (24%), Positives = 179/427 (41%), Gaps = 46/427 (10%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ + +++ F+ LGI +KD V++ PN F + +GA+ A P +
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
SE++ + + I +P D + ++ + F L
Sbjct: 112 SEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
+L +P+V K +D A L S G+TG+SK + TH ++I SL S V LD
Sbjct: 168 DLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYIY-SLKRSVE---VCWLD 221
Query: 206 H--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
H V L LPM H + LS +LY G VV + A IE+ +VT+
Sbjct: 222 HSTVYLAALPMAHNYPLSSPGVLGVLY----AGGRVVLSPSPSPDDAFPLIEREKVTITA 277
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 318
+VPP+ + + R+ D+SSL+++ G A E K + G T+ Q +GM E
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGL 336
Query: 319 APIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFEL 377
+ L++P + + G ++ + V D + + P + G + RGP +
Sbjct: 337 VNYTRLDDPEEII--VNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK 394
Query: 378 TVNCNLFS-----YFRSND----HNDFFCKL------------FQVAPAELEGLLVSHPE 416
N S ++R+ D D + + +VA E+E L++HP
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 417 ILDAVVI 423
+ DA ++
Sbjct: 455 VHDAAMV 461
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/423 (22%), Positives = 176/423 (41%), Gaps = 37/423 (8%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
++ + + + + R LG+ ++ +L+ +++ P+ FLG + G + AN + T
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
++ + S+ + VI L V A G + F +LI
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEELI 168
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
+ + D A LYSSG+TG KG + TH N + + + + E D
Sbjct: 169 DAAAPAAKAAATGCD--DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND 226
Query: 206 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA-IEKYRVTVWWVVPPII 264
VV +F +GL L L G + M + A+ A + ++R TV++ VP +
Sbjct: 227 -VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
Query: 265 L-ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISL 323
L +L + D+ ++++ S L +E+ E + G I G G TE I L
Sbjct: 286 ANMLVSPNLPARADV-AIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLH-IFL 342
Query: 324 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVF----ELTV 379
N G G+ G V G E ++ + +P ++G+++++GP+ ++ E +
Sbjct: 343 SN-RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400
Query: 380 NCNLFSYFRSNDHNDFFCKLFQ-------------------VAPAELEGLLVSHPEILDA 420
L + RS D +C+L V+P E+E +LV H +L+A
Sbjct: 401 ATFLGEWIRSGDK---YCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEA 457
Query: 421 VVI 423
V+
Sbjct: 458 AVV 460
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/427 (24%), Positives = 174/427 (40%), Gaps = 46/427 (10%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ + +++ F+ LGI +KD V++ PN F + +GA+ A P +
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
SE++ + + I +P D + ++ + F L
Sbjct: 112 SEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 205
+L +P+V K +D A L S G+TG+SK + TH ++I SL S V LD
Sbjct: 168 DLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYI-YSLKRSVE---VCWLD 221
Query: 206 H--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWW 258
H V L LP H + LS +LY G VV + A IE+ +VT+
Sbjct: 222 HSTVYLAALPXAHNYPLSSPGVLGVLY----AGGRVVLSPSPSPDDAFPLIEREKVTITA 277
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC 318
+VPP+ + R+ D+SSL+++ G A E K + G T+ Q +G E
Sbjct: 278 LVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAEGL 336
Query: 319 APIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFEL 377
+ L++P + + G + + V D + + P + G + RGP +
Sbjct: 337 VNYTRLDDPEEII--VNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK 394
Query: 378 TVNCNLFS-----YFRSND----HNDFFCKL------------FQVAPAELEGLLVSHPE 416
N S ++R+ D D + + +VA E+E L++HP
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 417 ILDAVVI 423
+ DA +
Sbjct: 455 VHDAAXV 461
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 170/418 (40%), Gaps = 48/418 (11%)
Query: 40 SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 99
R LG+ D V N + V +GA+ TANP + E++ + + K+
Sbjct: 63 GLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 122
Query: 100 VITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSV 159
++ P L V+ + + + E G D V V
Sbjct: 123 LLFDPNLLPLVEAIR-------GELKTVQHFVVMDEKAPEGYLAYEEALGEEAD--PVRV 173
Query: 160 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG 219
+ A + Y++GTTG+ KGV+ +H+ + SL S VVL V+PMFHV
Sbjct: 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 233
Query: 220 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS 279
+ L V+ + D + + VT VP + LALA +
Sbjct: 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK 293
Query: 280 SLK--LVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAG 337
+L+ +VG AAP + L+ ++ G + QGYG+TET +P+ ++N + S S
Sbjct: 294 TLRRLVVGGSAAP--RSLIARFERM--GVEVRQGYGLTET-SPVVVQNFVKSHLESLSEE 348
Query: 338 ---TLVAGVEAQI------VSVDTLKPLPPN--QLGEIWVRGPNVTPVF---ELTVNCNL 383
TL A I V+ + +P+P + LGE+ ++GP +T + E L
Sbjct: 349 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 408
Query: 384 F--SYFRSND-----------HNDFFCKLFQ-----VAPAELEGLLVSHPEILDAVVI 423
+FR+ D D L + ++ +LE L+ HP++ +A V+
Sbjct: 409 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/427 (22%), Positives = 165/427 (38%), Gaps = 39/427 (9%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+F K K ++ F GI K D V++ + F C LG+ +GAIA A +
Sbjct: 88 TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
++ +++ + K+++ + E D + ++ G F +
Sbjct: 148 RDIVYRIEKAGLKMIVCIAED-DVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKEL 206
Query: 146 ELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 203
E S + + P +VS K D + +SSGT G K ++ H N +++A E
Sbjct: 207 EESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAKYWQNVE 264
Query: 204 LDHVVLCVLPMFHVFGLSVILYDQLQKGNC--VVSMGKFDIEMALRAIEKYRVTVWWVVP 261
D + V + LY Q G V +F+ + L KY VT + P
Sbjct: 265 DDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPP 324
Query: 262 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC--- 318
I L K L ++ S+LK PL E+ + G + +G+G TET
Sbjct: 325 TIYRFLIKEDLSH-YNFSTLKYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTI 382
Query: 319 --------APISLENPLVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLP-------- 357
P S+ P G + R G + G E +IV ++T++ P
Sbjct: 383 ATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEV--GEEGEIV-INTMEGKPVGLFVHYG 439
Query: 358 --PNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHP 415
P + E W G T ++ + + +F + ++V P E+E L+ HP
Sbjct: 440 KDPERTEETWHDGYYHTGDMAW-MDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498
Query: 416 EILDAVV 422
+L+ +
Sbjct: 499 AVLECAI 505
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 23/309 (7%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+ + ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
+EL++ +K ++ V + +V D + GS DL+
Sbjct: 91 AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
+ P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
+ ALA + + SL+ V A + ++E +++PG + GYG TE
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNS 312
Query: 321 ISLENPLVG 329
+ + P G
Sbjct: 313 LYMRQPKTG 321
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+ + ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
+EL++ +K ++ V + +V D + GS DL+
Sbjct: 91 AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
+ P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNS 312
Query: 321 ISLENPLVG 329
+ + P G
Sbjct: 313 LYMRQPKTG 321
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 161/422 (38%), Gaps = 70/422 (16%)
Query: 45 GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI--- 101
G+ K D L+ PN F I F ++ G + A + EL+ +K PKL+I
Sbjct: 76 GLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR 135
Query: 102 -----TVPELWDKVKDLNL-PAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP 155
+ + D + D+NL P ++L D IE
Sbjct: 136 QHEVFSNNQFIDSLHDVNLSPEIIL----------MLNHQATDFGLLDWIETPAET--FV 183
Query: 156 DVSVKQTDAAALLY-SSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLP 213
D S D A S G+TG K + TH ++ + A E+ G + +LC LP
Sbjct: 184 DFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDY---DYSVRASAEICGLNSNTRLLCALP 240
Query: 214 MFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 272
H F LS L G CVV + I++++V + +VP ++ + +
Sbjct: 241 APHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA 300
Query: 273 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRR 332
K I SLKL+ G A + L + + + Q +GM E LV R
Sbjct: 301 QYKDQIQSLKLLQVGGASFPESLARQVPE-VLNCKLQQVFGMAEG---------LVNYTR 350
Query: 333 SGSAGTLVAGVEAQIVSVD--------TLKPLPPNQLGEIWVRGP-----------NVTP 373
+ + + + +S D + +P ++G + RGP + +
Sbjct: 351 LDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410
Query: 374 VF------------ELTVNCNLFSYFRSNDHNDFFCKLFQVAPAELEGLLVSHPEILDAV 421
VF + T + NL R D + + ++A E+E L++ HPE++ A
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGE--KIASEEIEKLILLHPEVMHAA 468
Query: 422 VI 423
++
Sbjct: 469 LV 470
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+ + ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
+EL++ +K ++ V + +V D + GS DL+
Sbjct: 91 AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
+ P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNS 312
Query: 321 ISLENPLVG 329
+ + P G
Sbjct: 313 LYMRQPKTG 321
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+ + ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
+EL++ +K ++ V + +V D + GS DL+
Sbjct: 91 AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
+ P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNS 312
Query: 321 ISLENPLVG 329
+ + P G
Sbjct: 313 LYMRQPKTG 321
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+ + ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
+EL++ +K ++ V + +V D + GS DL+
Sbjct: 91 AELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
+ P + Q + A + Y+SGTTG+ K I+ + + L +S L
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
+VVL ++P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
+ ALA + + SL+ V A + ++E +++PG + YG TE
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNS 312
Query: 321 ISLENPLVG 329
+ + P G
Sbjct: 313 LYMRQPKTG 321
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ V + +++ LGI K DVV I+ P + L IGA+ S ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86 SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T ++ AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
+ G+ + C + V G S +LY L G + G + R
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
++K++V + + P I AL + + D SSL+++GS P+ E E K I
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
+ + TET + P ++GSA GV+ +V +
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
+ P Q ++ + T FS + D + +
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
++ AE+E LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ V + +++ LGI K DVV I+ P + L IGA+ S ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86 SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T ++ AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
+ G+ + C + V G S +LY L G + G + R
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
++K++V + + P I AL + + D SSL+++GS P+ E E K I
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
+ + TET + P ++GSA GV+ +V +
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
+ P Q ++ + T FS + D + +
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
++ AE+E LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ V + +++ LGI K DVV I+ P + L IGA+ S ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86 SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T ++ AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
+ G+ + C + V G S +LY L G + G + R
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
++K++V + + P I AL + + D SSL+++GS P+ E E K I
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
+ + TET + P ++GSA GV+ +V +
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
+ P Q ++ + T FS + D + +
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
++ AE+E LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ V + +++ LGI K DVV I+ P + L IGA+ S ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86 SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T ++ AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
+ G+ + C + V G S +LY L G + G + R
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
++K++V + + P I AL + + D SSL+++GS P+ E E K I
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
+ + TET + P ++GSA GV+ +V +
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
+ P Q ++ + T FS + D + +
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
++ AE+E LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ V + +++ LGI K DVV I+ P + L IGA+ S ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86 SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T ++ AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
+ G+ + C + V G S +LY L G + G + R
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
++K++V + + P I AL + + D SSL+++GS P+ E E K I
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
+ + TET + P ++GSA GV+ +V +
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
+ P Q ++ + T FS + D + +
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
++ AE+E LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 172/445 (38%), Gaps = 52/445 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ V + +++ LGI K DVV I+ P + L IGA+ S ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86 SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
++ ++ DS+ +LVIT E + D +K+ N+ +V
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T ++ AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
+ G+ + C + V G S +LY L G + G + R
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
++K++V + + P I AL + + D SSL+++GS P+ E E K I
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
+ + TET + P ++GSA GV+ +V +
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
+ P Q ++ + T FS + D + +
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
++ AE+E LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 171/445 (38%), Gaps = 52/445 (11%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ V + +++ LGI K DVV I+ P + L IGA+ S ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 86 SELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKDXXXXXXXX 132
++ + DS+ +LVIT E + D +K+ N+ +V
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 228
Query: 133 XXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI--AA 190
+ DLIE S P+ ++ D +LY+SG+TG KGV+ T ++ AA
Sbjct: 229 WQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 286
Query: 191 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALR-- 247
+ G+ + C + V G S +LY L G + G + R
Sbjct: 287 TTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343
Query: 248 -AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI- 303
++K++V + + P I AL + + D SSL+++GS P+ E E K I
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 304 -PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD----------- 351
+ + TET + P ++GSA GV+ +V +
Sbjct: 404 KEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN 463
Query: 352 -TLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCKL----------- 399
+ P Q ++ + T FS + D + +
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS 523
Query: 400 -FQVAPAELEGLLVSHPEILDAVVI 423
++ AE+E LV+HP+I +A V+
Sbjct: 524 GHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 23/309 (7%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
+ + ++ V V+ G+ + V + APNS I L + +GA+ + NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
+EL++ +K + AV+ + DL+
Sbjct: 91 AELAELIK-----------------RGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDLV 133
Query: 146 ELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 202
+ P + Q + A + Y+SGTTG+ K I+ + + L S L
Sbjct: 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRH 193
Query: 203 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 262
+VVL + P++HV G +L L V + +F AL+ +++ +VT + P
Sbjct: 194 GRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPT 253
Query: 263 IILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 320
+ ALA + + SL+ V A ++E +++PG + YG TE
Sbjct: 254 HLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNS 312
Query: 321 ISLENPLVG 329
+ P G
Sbjct: 313 LYXRQPKTG 321
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 134/339 (39%), Gaps = 34/339 (10%)
Query: 44 LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 103
+G+ K D V ++ P I L + IGAI S ++ + L ++ D + K+VIT
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193
Query: 104 PELWDKVKDLNLPAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSV------TD 153
E K + + L + FH +L + T
Sbjct: 194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTY 253
Query: 154 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM-----ISAHQELVGELDHVV 208
P V D LLY+SG+TG KGV + ++ +L+ HQE V
Sbjct: 254 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQE------DVF 307
Query: 209 LCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPI- 263
+ + G + ++Y L G + + + I++++VT ++V P
Sbjct: 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTAL 367
Query: 264 -ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT--IFQGYGMTETCAP 320
+L A +S + + SL+ +GS P+ E+ E + I I Y TE+ +
Sbjct: 368 RLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS- 426
Query: 321 ISLENPLVGV---RRSGSAGTLVAGVEAQIVSVDTLKPL 356
L PL G + GSA G++A ++ +T + L
Sbjct: 427 -HLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 156 DVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 212
DV++++ D A L Y+SG+T +GVI+TH+ + A+L +H + + L
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHRE-VXANLRAISHDGIKLRPGDRCVSWL 224
Query: 213 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA 268
P +H GL L + V + D L+ I K R TV V PP L
Sbjct: 225 PFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTV-SVAPPFGYELC 283
Query: 269 KNSLVRK----FDISSLKLVGSGAAPLGKELME---DC--QKNIPGATIFQGYGMTETCA 319
+ + K D+S ++ G GA P+ E + +C Q N T YG+ E
Sbjct: 284 QRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENAL 343
Query: 320 PISLENPLVGV 330
+S + GV
Sbjct: 344 AVSFSDEASGV 354
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 138/372 (37%), Gaps = 81/372 (21%)
Query: 51 VVLIFAPNSIHFPI--CFLGVIAIGAIASTANPVYTVSELSKQ---VKDSNPKLVI---- 101
V+L+FAP P+ FLG + G IA P L K V +S P +V+
Sbjct: 68 VLLLFAPG---LPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIAD 124
Query: 102 -----TVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD 156
T EL K L +PA+ L S IEL+ S + P
Sbjct: 125 HIKKFTADELNTNPKFLKIPAIALES----------------------IELNRSSSWQP- 161
Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPM 214
S+K D A L Y+SG+T KGV ++H N + + S H + ++ LP
Sbjct: 162 TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHX----NDETIIFSWLPP 217
Query: 215 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWW---VVPPIILAL 267
H GL + + G + F L+ I KY+ T+ +
Sbjct: 218 HHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277
Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK-----NIPGATIFQGYGMTE------ 316
+ D+SS +GA P+ +E E + + YG+ E
Sbjct: 278 IREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337
Query: 317 -----------TCAPISLENPLVGVRRSGSAGT--LVAG----VEAQIVSVDTLKPLPPN 359
T A ++ V S G+ LV+ E +I+ DTL P +
Sbjct: 338 GGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD 397
Query: 360 QLGEIWVRGPNV 371
Q+GEIWV+ +V
Sbjct: 398 QVGEIWVQSNSV 409
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 88/440 (20%), Positives = 161/440 (36%), Gaps = 83/440 (18%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
++ +++H LG+ +V + + L V+ G + +P + V
Sbjct: 102 TYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPV 161
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
L+ ++D+ L++T L ++ L
Sbjct: 162 ERLALSLEDTGAPLLVTSRPLSGRLTGTTT----------------------------LY 193
Query: 146 ELSGSVTDIPD----VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
+ +D P V D A ++++SG+TG KGV+ H+ L Q+
Sbjct: 194 VEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYA 249
Query: 202 G-ELDHVVLCVLPM-FHVFGLSVILYDQLQKG-NCVVSMGKFDIEMAL-RAIEKYRVTVW 257
G D V L P+ + FGL L+ L G CV+ G+ + + + ++ VT+
Sbjct: 250 GFGPDEVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307
Query: 258 WVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 315
+ + N LV + ++ +G P + +++ P + GYG
Sbjct: 308 QLSASLF-----NFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPA 362
Query: 316 ETCAPISLENPLVGVRRSGSA---GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG---- 368
E+ + + +V SG+A G +AG A ++ D LKP LGE++V G
Sbjct: 363 ESMG-FTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLA 420
Query: 369 -----------------PNVTPVFELTVNCNLFSYFRSNDHNDFFCKL--------FQVA 403
P P E + R++ ++ + F+V
Sbjct: 421 HGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVE 480
Query: 404 PAELEGLLVSHPEILDAVVI 423
P E+E LV HP + A V+
Sbjct: 481 PGEVEARLVGHPAVRQAAVL 500
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 131/310 (42%), Gaps = 45/310 (14%)
Query: 149 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 208
GSV+ D VK+ + ++Y+SG+TG KGV ++ N + + I A + G +
Sbjct: 132 GSVSQ--DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG--GKIF 187
Query: 209 LCVLPMFHVFGLSVI-LYDQLQKG---NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 264
L P F LSV+ LY LQ G +CV ++ ++K + VW P +
Sbjct: 188 LNQAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFV 245
Query: 265 -LALAKNSLVRKFDISSLKLVGSGA---APLGKELMEDCQKNIPGATIFQGYGMTE-TCA 319
+ L + + + G + K L+E P A IF YG TE T A
Sbjct: 246 QMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLE----RFPKAKIFNTYGPTEATVA 301
Query: 320 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPVF--- 375
S+E + RS S A + I +D +PLP + GEI + GP+V+ +
Sbjct: 302 VTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGE 361
Query: 376 -ELTVNCNLFSY-----FRSNDHN-------------DFFCKL--FQVAPAELEGLLVSH 414
ELT FS+ +R+ D DF KL +++ E+E +
Sbjct: 362 PELTEKA-FFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420
Query: 415 PEILDAVVIP 424
+ AVVIP
Sbjct: 421 QYVRSAVVIP 430
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 92/444 (20%), Positives = 153/444 (34%), Gaps = 76/444 (17%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ ++ S R GI + L+ N I F ++ +G A +
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
SEL+ P L+I D+ L L + H+L
Sbjct: 112 SELNAYASQIEPALLIA-----DRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQ 166
Query: 146 E-LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF---IAASLMISAHQELV 201
+ ++ D + A S GTTG K + TH ++ + S+ I +
Sbjct: 167 DAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQT 226
Query: 202 GELDHVVLCVLPMFHVFGLS------VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 255
LC +P H + +S V L G VV + IEK++V
Sbjct: 227 -----RYLCAIPAAHNYAMSSPGSLGVFL-----AGGTVVLAADPSATLCFPLIEKHQVN 276
Query: 256 VWWVVPPIILALAKNSLVR---KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 312
V +VPP + +L +L+ + ++SLKL+ G A L L I G + Q +
Sbjct: 277 VTALVPPAV-SLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVF 334
Query: 313 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL--------KPLPPNQLGEI 364
GM E LV R + + + + D PLP ++G +
Sbjct: 335 GMAEG---------LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRL 385
Query: 365 WVRGPNVTPVFELTVNCNLFSYFRSNDHNDFFCK-------------------------L 399
RGP + + N ++ D N F+C
Sbjct: 386 MTRGPYTFRGYYKSPQHNASAF----DANGFYCSGDLISIDPEGYITVQGREKDQINRGG 441
Query: 400 FQVAPAELEGLLVSHPEILDAVVI 423
++A E+E LL+ HP ++ A ++
Sbjct: 442 EKIAAEEIENLLLRHPAVIYAALV 465
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
S+ +++ + G K VV ++ S+ I LGV+ GA +P
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
+S + DS ++T E+ ++ +L L D
Sbjct: 551 DRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL-------------------FIDDQT 591
Query: 146 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 186
+D P ++ D A ++Y+SGTTG KG I TH N
Sbjct: 592 RFEEQASD-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/360 (20%), Positives = 137/360 (38%), Gaps = 54/360 (15%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 85
++ +++H LG+ +V + + L V+ G + +P + V
Sbjct: 102 TYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPV 161
Query: 86 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLI 145
L+ ++D+ L++T L ++ L
Sbjct: 162 ERLALSLEDTGAPLLVTSRPLSGRLTGTTT----------------------------LY 193
Query: 146 ELSGSVTDIPD----VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 201
+ +D P V D A ++++SG+TG KGV+ H+ L Q+
Sbjct: 194 VEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYA 249
Query: 202 G-ELDHVVLCVLPM-FHVFGLSVILYDQLQKG-NCVVSMGKFDIEMAL-RAIEKYRVTVW 257
G D V L P+ + FGL L+ L G CV+ G+ + + + ++ VT+
Sbjct: 250 GFGPDEVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307
Query: 258 WVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 315
+ + N LV + ++ +G P + +++ P + GYG
Sbjct: 308 QLSASLF-----NFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPA 362
Query: 316 ETCAPISLENPLVGVRRSGSA---GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
E+ + + +V SG+A G +AG A ++ D LKP LGE++V G +
Sbjct: 363 ESMG-FTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLA 420
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 117/295 (39%), Gaps = 49/295 (16%)
Query: 36 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 95
+++ F GI K +V I SI I L V+ G + Y + + DS
Sbjct: 76 QLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDS 135
Query: 96 NPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL-SGSVTDI 154
++++T L + ++ + ++ D I++ G+ +
Sbjct: 136 QARMLLTQKHLVHLIHNIQFNGQVEIFEE------------------DTIKIREGTNLHV 177
Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKN------FIAASLMISAHQELVGELDHVV 208
P K TD A ++Y+SGTTG KG +L HK F SL ++ ++ +G+ +
Sbjct: 178 PS---KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVT-EKDRIGQFASIS 233
Query: 209 L--CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILA 266
V MF LY L+ + + KF+ + I + +TV + P ++
Sbjct: 234 FDASVWEMFMALLTGASLYIILK--DTINDFVKFE-----QYINQKEITVITLPPTYVVH 286
Query: 267 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTET--CA 319
L R I +L GS +P L+ ++ + T YG TET CA
Sbjct: 287 LDPE---RILSIQTLITAGSATSP---SLVNKWKEKV---TYINAYGPTETTICA 332
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 103/245 (42%), Gaps = 43/245 (17%)
Query: 149 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 208
G VT P + D A ++Y+SGTTG KGV + H N +A L+ A D
Sbjct: 164 GPVTGAPGPGAE--DMAYVIYTSGTTGNPKGVPVRHANVLA--LLAGAPSVFDFSGDDRW 219
Query: 209 LCVLPMFH--VFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAIEKY-------RVTVWW 258
L +FH F SV ++ G +V + + A R E+Y VTV
Sbjct: 220 L----LFHSLSFDFSVWEIWGAFSTGAELVVLPHW----AARTPEQYLAVIIDRGVTVIN 271
Query: 259 VVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQGYGMTE 316
P LAL + ++ D+S L+ V G L ++ K + + GYG+TE
Sbjct: 272 QTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITE 331
Query: 317 ----------TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 366
T A ++ + ++G R S GT V G + + V+ P + GE+W+
Sbjct: 332 TTVFTTFEEITEAYLAQDASIIG-RALPSFGTRVVGDDGRDVA--------PGETGELWL 382
Query: 367 RGPNV 371
G +
Sbjct: 383 SGAQL 387
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 115/298 (38%), Gaps = 42/298 (14%)
Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 216
V +A+A+ ++SGT+G+ K ++ + + M + L + ++ +
Sbjct: 201 VETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGL--QASDIMWTISDTGW 258
Query: 217 VFGLSVILYDQLQKGNC--VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 274
+ + L + G C V + KFD + L+ + Y + P + L +
Sbjct: 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---- 314
Query: 275 KFDISSLKLVG-SGAAPLGKELMEDCQKNIPGAT---IFQGYGMTETCAPISLENPLVGV 330
D+SS K +G+ L+ + +N T I + YG TET + +
Sbjct: 315 --DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMK-- 370
Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN 390
+ G GT + + QI+ D LPP G+I +R + P+ + + +N
Sbjct: 371 IKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAAN 429
Query: 391 DHNDFF-------------------------CKLFQVAPAELEGLLVSHPEILDAVVI 423
DF+ +++ P+E+E L+ HP +++ VI
Sbjct: 430 IRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVI 487
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 115/298 (38%), Gaps = 42/298 (14%)
Query: 157 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 216
V +A+A+ ++SGT+G+ K ++ + + M + L + ++ +
Sbjct: 201 VETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGL--QASDIMWTISDTGW 258
Query: 217 VFGLSVILYDQLQKGNC--VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 274
+ + L + G C V + KFD + L+ + Y + P + L +
Sbjct: 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---- 314
Query: 275 KFDISSLKLVG-SGAAPLGKELMEDCQKNIPGAT---IFQGYGMTETCAPISLENPLVGV 330
D+SS K +G+ L+ + +N T I + YG TET + +
Sbjct: 315 --DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMK-- 370
Query: 331 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFSYFRSN 390
+ G GT + + QI+ D LPP G+I +R + P+ + + +N
Sbjct: 371 IKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAAN 429
Query: 391 DHNDFF-------------------------CKLFQVAPAELEGLLVSHPEILDAVVI 423
DF+ +++ P+E+E L+ HP +++ VI
Sbjct: 430 IRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVI 487
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
P+ +VK + ++Y+SG+TG KGV +T+ + S A ++ + V L P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQVFLNQAPF 194
Query: 215 FHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALR------AIEKYRVTVWWVVPPIILAL 267
F LSV+ +Y L G + ++ K +M R ++E+ + VW P
Sbjct: 195 --SFDLSVMDIYPSLVTGGTLWAIDK---DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS---LE 324
+ + + ++K L E+ + P ATI YG TE ++ +
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
++ +S G + I+ D P + GEI + GP+V+
Sbjct: 310 EEVLDQYKSLPVGYCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVS 356
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 155 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 214
P+ +VK + ++Y+SG+TG KGV +T+ + S A ++ + V L P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQVFLNQAPF 194
Query: 215 FHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALR------AIEKYRVTVWWVVPPIILAL 267
F LSV+ +Y L G + ++ K +M R ++E+ + VW P
Sbjct: 195 --SFDLSVMDIYPSLVTGGTLWAIDK---DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 268 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPIS---LE 324
+ + + ++K L E+ + P ATI YG TE ++ +
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 325 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
++ +S G + I+ D P + GEI + GP+V+
Sbjct: 310 EEVLDQYKSLPVGYCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVS 356
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 26/230 (11%)
Query: 158 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 217
SVK D ++++SGTTG KGV ++H N ++ + + +L P +
Sbjct: 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPP--YS 198
Query: 218 FGLSVILYD-QLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPII--------L 265
F LSV+ + L G + ++ K D + I + V +W P
Sbjct: 199 FDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF 258
Query: 266 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETC---APIS 322
AK + F +L S A ++L E P A I YG TE + I
Sbjct: 259 CQAKMPALTHFYFDGEELTVSTA----RKLFE----RFPSAKIINAYGPTEATVALSAIE 310
Query: 323 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 372
+ +V G I+ D K L + GEI V GP V+
Sbjct: 311 ITREMVDNYTRLPIGYPKPDSPTYIIDEDG-KELSSGEQGEIIVTGPAVS 359
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 31/206 (15%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA---STANPV 82
++S + V+ G T D V+I AP + + + FLG + G IA S
Sbjct: 60 TWSQLYRRTLNVAQELSRCGSTG-DRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGG 118
Query: 83 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFH 142
T + DS+P ++T D V + A G
Sbjct: 119 VTDERSDSVLSDSSPVAILTTSSAVDDV--VQHVARRPGESPPSIIEV------------ 164
Query: 143 DLIELSGSVTDIPDVSVKQTD----AAALLYSSGTTGVSKGVILTHKNF-IAASLMIS-- 195
DL++L D P+ + D A L Y+SG+T GV+++H+N + ++S
Sbjct: 165 DLLDL-----DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY 219
Query: 196 -AHQELVGELDHVVLCVLPMFHVFGL 220
A + + + ++ LP +H GL
Sbjct: 220 FADTDGIPPPNSALVSWLPFYHDMGL 245
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 346 QIVSVDTLKPLPPNQLGEIWVRGPNV 371
+IV DT P +GEIWV G NV
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNV 430
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 77/206 (37%), Gaps = 31/206 (15%)
Query: 26 SFSMFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA---STANPV 82
++S + V+ G T D V+I AP + + + FLG + G IA S
Sbjct: 60 TWSQLYRRTLNVAQELSRCGSTG-DRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGG 118
Query: 83 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFH 142
T + DS+P ++T D V + A G
Sbjct: 119 VTDERSDSVLSDSSPVAILTTSSAVDDV--VQHVARRPGESPPSIIEV------------ 164
Query: 143 DLIELSGSVTDIPDVSVKQTD----AAALLYSSGTTGVSKGVILTHK----NFIAASLMI 194
DL++L D P+ + D A L Y+SG+T GV+ +H+ NF
Sbjct: 165 DLLDL-----DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGY 219
Query: 195 SAHQELVGELDHVVLCVLPMFHVFGL 220
A + + + ++ LP +H GL
Sbjct: 220 FADTDGIPPPNSALVSWLPFYHDXGL 245
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 346 QIVSVDTLKPLPPNQLGEIWVRGPNV 371
+IV DT P +GEIWV G NV
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNV 430
>pdb|4FQU|A Chain A, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|B Chain B, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|C Chain C, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|D Chain D, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|E Chain E, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|F Chain F, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|G Chain G, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|H Chain H, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
Length = 313
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 329 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPVFELTVNCNLFS--- 385
GV RSG A T A EA DTL L + G W+ G +T + LF
Sbjct: 182 GVYRSGFATTQEAYEEAFYPLFDTLDWLEEHLTGREWLVGDRLT-----EADIRLFPTLV 236
Query: 386 YFRSNDHNDFFCKLFQVAP----AELEGLLVSHPEI 417
F + H F C L ++A + L G L SH +
Sbjct: 237 RFDAIYHGHFKCNLRRIADYPNLSRLVGKLASHERV 272
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 304 PGATIFQ---GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ 360
PG T+ G+G T A + ++G+ S + A E + S+DT N+
Sbjct: 90 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQH---ARCEQVLASIDT------NR 140
Query: 361 LGEIWVRG-PNVTPVFELTVNCNLFSYFRSNDHNDFFCKLFQVAPAE 406
++ ++G + + V+ F +F +++DFF + F + PA+
Sbjct: 141 SRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD 187
>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 267 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 303
L N LVRK + G+ +G++LME C K+I
Sbjct: 219 LTSNPLVRKLSFT-------GSTEIGRQLMEQCAKDI 248
>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|B Chain B, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|D Chain D, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 267 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 303
L N LVRK + G+ +G++LME C K+I
Sbjct: 219 LTSNPLVRKLSFT-------GSTEIGRQLMEQCAKDI 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,791,668
Number of Sequences: 62578
Number of extensions: 456653
Number of successful extensions: 1098
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 129
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)