BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014436
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 117/263 (44%), Gaps = 28/263 (10%)
Query: 99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
TPLHVA+ GH IV+ L+ R + N K T LH A G+ EV K
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASP-----------NVSNVKVETPLHMAARAGHTEVAK 64
Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
L + A D +TPL+ AA ++MV LLEN + + G T LH A
Sbjct: 65 YLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR- 122
Query: 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKD 278
+G + L ++ S +T + G+TP+H AA +GK + +LL N A K+
Sbjct: 123 ---EGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 279 RKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF---LHYAVASFQLQDLKPLLR 335
+T LH+A H ++ + L P + WN LH A Q++ + LL+
Sbjct: 179 -GLTPLHVAV---HHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Query: 336 NPFARILINEGDAKGNTPLHVFA 358
+ N +G TPLH+ A
Sbjct: 234 YGGSA---NAESVQGVTPLHLAA 253
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 124/303 (40%), Gaps = 69/303 (22%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLI-DRAKL-AQDGDEAARQMIRMVNNKKNTALHDAMFP 151
N K +TPLH+AA+ GH+++ + L+ ++AK+ A+ D+ T LH A
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-------------QTPLHCAARI 90
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
G+ +VK+L + + P A G TPL++AA + VL LLE S + G T
Sbjct: 91 GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP 149
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL------ 265
LH A Y + + +L + + + G TP+H A +H I LL
Sbjct: 150 LHVAAKYGKVR-----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 266 ---------------------EIDQT-----ATNIADKDRKMTALHLAAGRGHARTVETI 299
E+ ++ + A+ + +T LHLAA GHA V +
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 300 LSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEG---DAK---GNTP 353
LS L + LH + P A +LI G DA G TP
Sbjct: 265 LSKQANG-NLGNKSGLTPLHLVAQEGHV---------PVADVLIKHGVMVDATTRMGYTP 314
Query: 354 LHV 356
LHV
Sbjct: 315 LHV 317
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 47/270 (17%)
Query: 59 NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
+T LHI E +E + C + KG TPLHVAAK+G + +L++
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 119 RAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP 178
R + A + + T LH A+ N+++VK+L P+S G TP
Sbjct: 168 RDA---HPNAAGKNGL--------TPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTP 215
Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV---------------------- 216
L++AA+ ++ +LL+ S + E G T LH A
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 217 ------MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQT 270
++ + H + + + ++ T + G+TP+H A+++G + L Q
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335
Query: 271 ATNIADKDRKMTALHLAAGRGHARTVETIL 300
N A + LH AA +GH V +L
Sbjct: 336 DVN-AKTKLGYSPLHQAAQQGHTDIVTLLL 364
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 117/270 (43%), Gaps = 27/270 (10%)
Query: 143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS 202
T LH A F G++ +VK L + P +N +TPL+MAA + +++ LL+N ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 203 HEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIN 262
+ + +T LH A + H M +L + + G TP+H AA G +
Sbjct: 75 AKAKDDQTPLHCAA-----RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG-HVET 128
Query: 263 DLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
L +++ A+ + T LH+AA G R E +L N LH AV
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN-GLTPLHVAV 187
Query: 323 ASFQLQDLKPLLRNPFARILINEGDA------KGNTPLHVFAAVRPSEFNRYMSR-TTHA 375
L ++L+ G + G TPLH+ A E R + + A
Sbjct: 188 HHNNLD---------IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 376 NYQAVNDQNVSVGHI-MKYGYPELLVINLS 404
N ++V Q V+ H+ + G+ E++ + LS
Sbjct: 239 NAESV--QGVTPLHLAAQEGHAEMVALLLS 266
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 23/141 (16%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKN----------- 142
+ +G TPLH+AA+ GH+++V +L+ + G+++ + +V + +
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 143 -----------TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV 191
T LH A GN+++VK L + D + G +PL+ AA+ +D+V
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIV 360
Query: 192 LTLLENCTSLSHEGPNGKTAL 212
LL+N S + +G T L
Sbjct: 361 TLLLKNGASPNEVSSDGTTPL 381
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82
S+ +L++AA +GN + KD+ + + T LH AEN +E+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH-----HAAENGH----KEV 52
Query: 83 LEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN 139
+++ + VNAK G TPLH AA+ GH ++V++LI + D R
Sbjct: 53 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-------- 104
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
T LH A G+ EVVK+L + D S +D G+TPL +A E ++ V+ LLE
Sbjct: 105 ---TPLHHAAENGHKEVVKLLISKGADVNTSDSD-GRTPLDLARE-HGNEEVVKLLE 156
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G+ D V+ LI+ D R T LH A G+ EVVK+L +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-----------TPLHHAAENGHKEVVKLLISK 59
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
D +D G+TPL+ AAE+ ++V L+ ++ + +G+T LH A
Sbjct: 60 GADVNAKDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG---- 114
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
H + +L K + + +D G TP+ A HG + LLE
Sbjct: 115 -HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 147 DAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGP 206
+A GN + VK L D S +D G+TPL+ AAE+ ++V L+ ++ +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
+G+T LH A H + +L K + + D G TP+H+AA +G + LL
Sbjct: 69 DGRTPLHHAAENG-----HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETI 299
N +D D + T L LA G+ V+ +
Sbjct: 124 SKGADVNTSDSDGR-TPLDLAREHGNEEVVKLL 155
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
L AAE+ + D V L+EN ++ +G+T LH A H + +L K +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG-----HKEVVKLLISKGAD 62
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
+ D G TP+H+AA +G + LL N D D + T LH AA GH V+
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENGHKEVVKL 121
Query: 299 ILS 301
++S
Sbjct: 122 LIS 124
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLA 303
+ G I A K + DL+E + N +D D + T LH AA GH V+ ++S
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGR-TPLHHAAENGHKEVVKLLISKG 60
Query: 304 PECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLH 355
+ D+ LH+A + + +K L+ +N D+ G TPLH
Sbjct: 61 AD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLH 108
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA+ GH ++V++L++ D+ R T LH A G++EV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-----------TPLHLAARNGHLEV 50
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
VK+L D + + G+TPL++AA + ++V LLE ++ + NG+T LH A
Sbjct: 51 VKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G+TPL++AA + ++V LLE ++ + NG+T LH A + H + +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56
Query: 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHAR 294
+ + D+ G TP+H AA +G + LL N DK+ + T LHLAA GH
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLE 115
Query: 295 TVETIL 300
V+ +L
Sbjct: 116 VVKLLL 121
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 18/120 (15%)
Query: 83 LEICPALL---IQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
LE+ LL VNAK G TPLH+AA+ GH ++V++L++ D+ R
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR----- 69
Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
T LH A G++EVVK+L D + + G+TPL++AA + ++V LLE
Sbjct: 70 ------TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305
G TP+H AA +G + LL N DK+ + T LHLAA GH V+ +L +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD 60
Query: 306 CFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA 358
N R LH A + L+ +K LL A +N D G TPLH+ A
Sbjct: 61 VNAKDKNGR-TPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAA 109
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 30/111 (27%)
Query: 29 LLKAAADGNAE------PFKDMAR----EVIESLLTL--------QTRNTILHINIMCQD 70
LL+A AD NA+ P AR EV++ LL + T LH+
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA----- 75
Query: 71 AENASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLID 118
A N + V+ +LE VNAK G TPLH+AA+ GH ++V++L++
Sbjct: 76 ARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 25/177 (14%)
Query: 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82
S+ +L++AA +GN + KD+ + + T LH+ AEN + V+ +
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLA-----AENGHKEVVKLL 56
Query: 83 LEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN 139
L NAK G TPLH+AA+ GH ++V++L L+Q D A+ ++
Sbjct: 57 LSQG----ADPNAKDSDGKTPLHLAAENGHKEVVKLL-----LSQGADPNAK------DS 101
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
T LH A G+ EVVK+L + D P +++ G+TPL +A E ++ V+ LLE
Sbjct: 102 DGKTPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDLARE-HGNEEVVKLLE 156
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G+ D V+ L++ D + T LH A G+ EVVK+L +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGK-----------TPLHLAAENGHKEVVKLLLSQ 59
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
D P + + GKTPL++AAE+ ++V LL + + +GKT LH A
Sbjct: 60 GAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG---- 114
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
H + +L + + +D G TP+ A HG + LLE
Sbjct: 115 -HKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
L AAE+ + D V LLEN ++ +GKT LH A H + +L + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG-----HKEVVKLLLSQGAD 62
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
D G TP+H AA +G + LL N D D K T LHLAA GH V+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKL 121
Query: 299 ILS 301
+LS
Sbjct: 122 LLS 124
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
GN + VK L D S +D GKTPL++AAE+ ++V LL + + +GKT
Sbjct: 15 GNKDRVKDLLENGADVNASDSD-GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 73
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH A H + +L + + D G TP+H AA +G + LL
Sbjct: 74 LHLAAENG-----HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 272 TNIADKDRKMTALHLAAGRGHARTVETI 299
N +D D + T L LA G+ V+ +
Sbjct: 129 PNTSDSDGR-TPLDLAREHGNEEVVKLL 155
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLA 303
+ G I A K + DLLE + N +D D K T LHLAA GH V+ +LS
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLE-NGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQG 60
Query: 304 PECFELVDNRRWNFLHYAVASFQLQDLKPLLR---NPFARILINEGDAKGNTPLHVFA 358
+ D+ LH A + + +K LL +P A+ D+ G TPLH+ A
Sbjct: 61 ADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK------DSDGKTPLHLAA 111
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNA+ G TPLH+AA FGH +IV VL L D A+ + + T LH A
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVL-----LKNGADVNAKDSLGV------TPLHLAA 88
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
G++E+V++L + D S + +G TPL++AA+ ++V LL+N ++ + GK
Sbjct: 89 RRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 210 TALHAAV 216
TA ++
Sbjct: 148 TAFDISI 154
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSH 203
L +A G + V+IL D +A D+ G TPL++AA ++V LL+N ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA 75
Query: 204 EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
+ G T LH A + H + ++ + + + +D +G+TP+H AA G I +
Sbjct: 76 KDSLGVTPLHLAA-----RRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 264 LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
+L + N DK K TA ++ G+ E + L
Sbjct: 131 VLLKNGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 67 MCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDG 126
+ + AEN + V+++LE A ++ G TPLH AA+ GH +IV++L+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 127 DEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
D R T LH A G+ E+VK+L + D P + + G+TPL+ AAE+
Sbjct: 67 DSDGR-----------TPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENG 114
Query: 187 SSDMVLTLLENCTSLSHEGPNGKTALHAA 215
++V LL + +G+T L A
Sbjct: 115 HKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82
S+ +L++AA +GN + KD+ + + T LH AEN +EI
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYA-----AENGH----KEI 52
Query: 83 LEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN 139
+++ + NAK G TPLH AA+ GH +IV++L+ + D R
Sbjct: 53 VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-------- 104
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
T LH A G+ E+VK+L + D P +++ G+TPL +A E + ++V LLE
Sbjct: 105 ---TPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIV-KLLE 156
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G+ D V+ L++ D R T LH A G+ E+VK+L +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGR-----------TPLHYAAENGHKEIVKLLLSK 59
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
D P + + G+TPL+ AAE+ ++V LL + + +G+T LH A +
Sbjct: 60 GAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-----EN 113
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
H + +L K + +D G TP+ A HG I LLE
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
GN + VK L D P +++ G+TPL+ AAE+ ++V LL + + +G+T
Sbjct: 15 GNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP 73
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH A + H + +L K + D G TP+HYAA +G I LL
Sbjct: 74 LHYAA-----ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 272 TNIADKDRKMTALHLAAGRGHARTVETI 299
N +D D + T L LA G+ V+ +
Sbjct: 129 PNTSDSDGR-TPLDLAREHGNEEIVKLL 155
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
L AAE+ + D V LLEN + +G+T LH A + H + +L K +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAA-----ENGHKEIVKLLLSKGAD 62
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
D G TP+HYAA +G I LL N D D + T LH AA GH V+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEIVKL 121
Query: 299 ILS 301
+LS
Sbjct: 122 LLS 124
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 80 EEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
+EI+++ + NAK G TPLH AA+ GH +IV++L+ + D R
Sbjct: 83 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGR----- 137
Query: 137 VNNKKNTALHDAMFPGNMEVVKILTRE 163
T L A GN E+VK+L ++
Sbjct: 138 ------TPLDLAREHGNEEIVKLLEKQ 158
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLA 303
+ G I A K + DLLE + N +D D + T LH AA GH V+ +LS
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLE-NGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKG 60
Query: 304 PECFELVDNRRWNFLHYAVASFQLQDLKPLLR---NPFARILINEGDAKGNTPLHVFA 358
+ D+ LHYA + + +K LL +P A+ D+ G TPLH A
Sbjct: 61 ADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK------DSDGRTPLHYAA 111
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 79 VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
V+E+L P+LL+Q + G PLH + F +I L+ + + D +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------D 69
Query: 139 NKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
+ T H A GN+EVVK L PD N G T L++A + ++ L+E
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIE 128
Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
N S+ + + LH A K + L G KS + D+ GWTP+ +A
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLK----LIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 257 G 257
G
Sbjct: 185 G 185
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE---SESSDMVLTLLENC 198
N LH A V+ L P + G+ PL+ + E + +L+ +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 199 TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR--KKSLLKVTDQYGWTPIHYAAYH 256
+ +G T H A G+ ++ L+ R K L K+T+Q G T +H A
Sbjct: 63 NLDDYPDDSGWTPFHIACSV----GNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAV-- 115
Query: 257 GKYW--INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
GK W ++ L + + I DK ++ LH AA G + +E + L D +
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQI-PLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 315 WNFLHYAVA 323
W L +A+A
Sbjct: 175 WTPLFHALA 183
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH A M +F +++L K SLL DQ G P+H++ + I L
Sbjct: 6 LHQACMENEF----FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 272 TNIAD--KDRKMTALHLAAGRGHARTVETILS--LAPECFELVDNRRWNFLHYAVASFQL 327
N+ D D T H+A G+ V+++ L P+ + N+ LH AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWF 120
Query: 328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAAV 360
+ + L+ N A + I D PLH A+V
Sbjct: 121 EVSQFLIENG-ASVRIK--DKFNQIPLHRAASV 150
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
+A G TPLH+AA +GH +IV VL+ K D + ++ +T LH A G+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLL---KHGAD--------VNAIDIXGSTPLHLAALIGH 92
Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
+E+V++L + D + + +G TPL++AA ++V LL++ ++ + GKTA
Sbjct: 93 LEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 83 LEICPALL---IQVNA---KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
LEI LL VNA G TPLH+AA GH +IV VL+ K D +
Sbjct: 60 LEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLL---KHGAD--------VNA 108
Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
V+ +T LH A G++E+V++L + D + + +GKT ++ ++ + D+
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + G TPL++AA ++V LL++ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A + H + ++ + + + D +G TP+H AA G I ++
Sbjct: 77 DIXGSTPLHLAALI-----GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
L N DK K TA ++ G+ E + L
Sbjct: 132 LLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
+T LHLAA GH VE +L + +D LH A L+ ++ LL++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD- 105
Query: 341 ILINEGDAKGNTPLHVFA 358
+N D G+TPLH+ A
Sbjct: 106 --VNAVDTWGDTPLHLAA 121
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 79 VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
V+E+L P+LL+Q + G PLH + F +I L+ + + D +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------D 69
Query: 139 NKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
+ T H A GN+EVVK L PD N G T L++A + ++ L+E
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIE 128
Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
N S+ + + LH A G + L G KS + D+ GWTP+ +A
Sbjct: 129 NGASVRIKDKFNQIPLHRAASV----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 257 G 257
G
Sbjct: 185 G 185
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE---SESSDMVLTLLENC 198
N LH A V+ L P + G+ PL+ + E + +L+ +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 199 TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR--KKSLLKVTDQYGWTPIHYAAYH 256
+ +G T H A G+ ++ L+ R K L K+T+Q G T +H A
Sbjct: 63 NLDDYPDDSGWTPFHIACSV----GNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAV-- 115
Query: 257 GKYW--INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
GK W ++ L + + I DK ++ LH AA G + +E + L D +
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIP-LHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 315 WNFLHYAVA 323
W L +A+A
Sbjct: 175 WTPLFHALA 183
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH A M +F +++L K SLL DQ G P+H++ + I L
Sbjct: 6 LHQACMENEF----FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 272 TNIAD--KDRKMTALHLAAGRGHARTVETILS--LAPECFELVDNRRWNFLHYAVASFQL 327
N+ D D T H+A G+ V+++ L P+ + N+ LH AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWF 120
Query: 328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAAV 360
+ + L+ N A + I D PLH A+V
Sbjct: 121 EVSQFLIENG-ASVRIK--DKFNQIPLHRAASV 150
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 79 VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
V+E+L P+LL+Q + G PLH + F +I L+ + + D +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------D 69
Query: 139 NKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
+ T H A GN+EVVK L PD N G T L++A + ++ L+E
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIE 128
Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
N S+ + + LH A G + L G KS + D+ GWTP+ +A
Sbjct: 129 NGASVRIKDKFNQIPLHRAASV----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 257 G 257
G
Sbjct: 185 G 185
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE---SESSDMVLTLLENC 198
N LH A V+ L P + G+ PL+ + E + +L+ +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 199 TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR--KKSLLKVTDQYGWTPIHYAAYH 256
+ +G T H A G+ ++ L+ R K L K+T+Q G T +H A
Sbjct: 63 NLDDYPDDSGWTPFHIACSV----GNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAV-- 115
Query: 257 GKYW--INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
GK W ++ L + + I DK ++ LH AA G + +E + L D +
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIP-LHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 315 WNFLHYAVA 323
W L +A+A
Sbjct: 175 WTPLFHALA 183
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH A M +F +++L K SLL DQ G P+H++ + I L
Sbjct: 6 LHQACMENEF----FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 272 TNIAD--KDRKMTALHLAAGRGHARTVETILS--LAPECFELVDNRRWNFLHYAVASFQL 327
N+ D D T H+A G+ V+++ L P+ + N+ LH AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWF 120
Query: 328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAAV 360
+ + L+ N A + I D PLH A+V
Sbjct: 121 EVSQFLIENG-ASVRIK--DKFNQIPLHRAASV 150
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
+A G TPLH+AA +GH +IV VL+ K D + ++ +T LH A G+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLL---KHGAD--------VNAIDIMGSTPLHLAALIGH 92
Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
+E+V++L + D + + +G TPL++AA ++V LL++ ++ + GKTA
Sbjct: 93 LEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 83 LEICPALL---IQVNA---KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
LEI LL VNA G TPLH+AA GH +IV VL+ K D +
Sbjct: 60 LEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLL---KHGAD--------VNA 108
Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
V+ +T LH A G++E+V++L + D + + +GKT ++ ++ + D+
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + G TPL++AA ++V LL++ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A + H + ++ + + + D +G TP+H AA G I ++
Sbjct: 77 DIMGSTPLHLAALI-----GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
L N DK K TA ++ G+ E + L
Sbjct: 132 LLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
+T LHLAA GH VE +L + +D LH A L+ ++ LL++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD- 105
Query: 341 ILINEGDAKGNTPLHVFA 358
+N D G+TPLH+ A
Sbjct: 106 --VNAVDTWGDTPLHLAA 121
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 17/128 (13%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNA+ GDTPLH+AA+ GH +IV VL+ K D + ++ +T LH A
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLL---KNGAD--------VNALDFSGSTPLHLAA 88
Query: 150 FPGNMEVVKILTREDPDYPYSAND-YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
G++E+V++L + D +A+D G TPL++AA++ ++V LL+ ++ + G
Sbjct: 89 KRGHLEIVEVLLKYGAD--VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 209 KTALHAAV 216
KTA ++
Sbjct: 147 KTAFDISI 154
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + YG TPL++AA ++V LL+N ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
+G T LH A K H + ++ + + + D G TP+H AA G I ++
Sbjct: 77 DFSGSTPLHLAA-----KRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 265 L 265
L
Sbjct: 132 L 132
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
D YG TP+H AA G I ++L + N D T LHLAA RGH VE +L
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF-SGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335
+ D LH A + L+ ++ LL+
Sbjct: 103 GADV-NADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
L AAE+ + D V L+EN ++ +G+T LH A K H + +L K +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-----KEGHKEIVKLLISKGAD 62
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
+ D G TP+HYAA G I LL N D D + T LH AA GH V+
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEIVKL 121
Query: 299 ILS 301
++S
Sbjct: 122 LIS 124
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G+ D V+ LI+ D R T LH A G+ E+VK+L +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-----------TPLHYAAKEGHKEIVKLLISK 59
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
D +D G+TPL+ AA+ ++V L+ ++ + +G+T LH A K
Sbjct: 60 GADVNAKDSD-GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-----KE 113
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
H + +L K + + +D G TP+ A HG I LLE
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A GN + VK L D S +D G+TPL+ AA+ ++V L+ ++ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
+G+T LH A K H + +L K + + D G TP+HYAA G I L
Sbjct: 67 DSDGRTPLHYAA-----KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETI 299
L N +D D + T L LA G+ V+ +
Sbjct: 122 LISKGADVNTSDSDGR-TPLDLAREHGNEEIVKLL 155
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 38/168 (22%)
Query: 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILH------------------I 64
S+ +L++AA +GN + KD+ + + T LH
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 65 NIMCQDAEN------ASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRV 115
++ +D++ A+ + +EI+++ + VNAK G TPLH AAK GH +IV++
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 116 LIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
LI + D R T L A GN E+VK+L ++
Sbjct: 122 LISKGADVNTSDSDGR-----------TPLDLAREHGNEEIVKLLEKQ 158
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLA 303
+ G I A K + DL+E + N +D D + T LH AA GH V+ ++S
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKG 60
Query: 304 PECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA 358
+ D+ LHYA + +K L+ +N D+ G TPLH A
Sbjct: 61 ADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAA 111
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 116/263 (44%), Gaps = 32/263 (12%)
Query: 28 KLLKAAADGNAEPFK---DMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILE 84
KLL+A ADG+ E + + E +E + + +CQ + A ++ L
Sbjct: 14 KLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPA---QKRLA 70
Query: 85 ICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKK 141
PA + VN G +PLHVAA G +D++ +L L + AR N +
Sbjct: 71 KVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLL-----LKHGANAGAR------NADQ 119
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
LH A G+ +VVK L + P + G TPL A ++V LL++ S+
Sbjct: 120 AVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178
Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
+ G TALH AV+ H + +L + ++V ++ T + A + K I
Sbjct: 179 NASNNKGNTALHEAVIE-----KHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--I 231
Query: 262 NDLLEIDQTAT----NIADKDRK 280
+LL++ + ++A+ DRK
Sbjct: 232 MELLQVVPSCVASLDDVAETDRK 254
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
+ VT Q G +P+H AA HG+ + LL + A A + LHLA +GH + V+
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLL-LKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 299 IL--SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLH 355
+L + P +L N L YA + + + LL++ + IN + KGNT LH
Sbjct: 138 LLDSNAKPNKKDLSGN---TPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALH 190
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AAK GH +IV VL+ K D + +N T LH A G++E+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLL---KYGAD--------VNAWDNYGATPLHLAADNGHLEI 95
Query: 157 VKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
V++L + D +A DY G TPL++AA ++V LL+ ++ + GKTA +
Sbjct: 96 VEVLLKHGAD--VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Query: 216 V 216
+
Sbjct: 154 I 154
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 46/198 (23%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ + L++ A+ QD DE M + + +T LH A G++E+V++L +
Sbjct: 12 SDLGKKLLEAARAGQD-DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD 224
D + ++YG TPL++AA++ ++V LL++ ++
Sbjct: 71 ADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVN---------------------- 107
Query: 225 HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTAL 284
D G+TP+H AAY G I ++L N DK K TA
Sbjct: 108 ----------------AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK-TAF 150
Query: 285 HLAAGRGHARTVETILSL 302
++ G+ E + L
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 81 EILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLI 117
EI+E+ VNAK G TPLH+AA GH +IV VL+
Sbjct: 94 EIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 71 AENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL---AQDGD 127
AEN + V+ +++ AL+ +A+G T LH+AAK GH ++V+ L+ ++ QD D
Sbjct: 52 AENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-D 109
Query: 128 EAARQM---------------------IRMVNNKKNTALHDAMFPGNMEVVKILTREDPD 166
M I + +N++N LH A F G +++ +IL D
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Query: 167 YPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217
++ N +G +PL++AA D V+ L + ++ + G+T L A +
Sbjct: 170 L-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
+M + K + LH A G++++ +L + + + D +TPL AAE+ + V L
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYL 63
Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
++ + + G T LH A KG + ++ L + + D GWTP+ +A
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAK----KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 255 YHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
+ + LL + NI D + + LH AA G E +L+
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENI-CLHWAAFSGCVDIAEILLA 165
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARI 341
T LHLAA +GH V+ +LS D+ W + +A ++ DL LL + + I
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT-EYKHVDLVKLLLSKGSDI 137
Query: 342 LINEGDAKGNTPLHVFA 358
I D + N LH A
Sbjct: 138 NIR--DNEENICLHWAA 152
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
+G TPLH+AA GH +IV VL L D AR + T LH A G++E
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVL-----LKHGADVNAR------DTDGWTPLHLAADNGHLE 94
Query: 156 VVKILTREDPDYPYSAND-YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA 214
+V++L + D +A D YG TPL++AA+ ++V LL++ ++ + GKTA
Sbjct: 95 IVEVLLKYGAD--VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 215 AV 216
++
Sbjct: 153 SI 154
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + +D G TPL++AA ++V LL++ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
+G T LH A H + ++ + + + D YG TP+H AA G I ++
Sbjct: 77 DTDGWTPLHLAA-----DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
L N DK K TA ++ G+ E + L
Sbjct: 132 LLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ + L++ A+ QD DE M + +++ +T LH A + G+ E+V++L +
Sbjct: 12 SDLGKKLLEAARAGQD-DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
D D G TPL++AA++ ++V LL+ ++ + G T LH A
Sbjct: 71 ADVNARDTD-GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 71 AENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117
A+N + VE +L+ + Q +A G TPLH+AA GH +IV VL+
Sbjct: 88 ADNGHLEIVEVLLKYGADVNAQ-DAYGLTPLHLAADRGHLEIVEVLL 133
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
+ +D GWTP+H AAY G I ++L + N AD +T LHLAA RGH VE
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEV 98
Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335
+L + D+ + LH A L+ ++ LL+
Sbjct: 99 LLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 14/121 (11%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA FGH +IV VL L D A + + T LH A G++EV
Sbjct: 47 GWTPLHLAAYFGHLEIVEVL-----LKNGADVNADDSLGV------TPLHLAADRGHLEV 95
Query: 157 VKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
V++L + D +AND+ G TPL++AA ++V LL++ ++ + GKTA +
Sbjct: 96 VEVLLKNGAD--VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Query: 216 V 216
+
Sbjct: 154 I 154
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D S + G TPL++AA ++V LL+N ++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A +G H + ++ + + + D G+TP+H AA G I ++
Sbjct: 77 DSLGVTPLHLAA----DRG-HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
L N DK K TA ++ G+ E + L
Sbjct: 132 LLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
+A G TPLH+AA GH +IV VL+ D A +R+ A+F G+
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA----------ALF-GH 92
Query: 154 MEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
+E+V++L + D +AND G TPL++AA ++V LL+N ++ + GKTA
Sbjct: 93 LEIVEVLLKNGAD--VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 213 HAAV 216
++
Sbjct: 151 DISI 154
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G D VR+L+ D + T LH A F G++E+V++L +
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGW-----------TPLHLAAFNGHLEIVEVLLKN 69
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
D + + G TPL +AA ++V LL+N ++ G T LH A M+
Sbjct: 70 GADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF----- 123
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
H + ++ + + + D++G T + +G DL EI Q
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN---EDLAEILQ 166
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 18/114 (15%)
Query: 83 LEICPALL---IQVNA---KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
LEI LL VNA G TPL +AA FGH +IV VL L D A M
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL-----LKNGADVNANDM--- 111
Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
+ +T LH A G++E+V++L + D + + +GKT ++ ++ + D+
Sbjct: 112 ---EGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDL 161
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
D GWTP+H AA++G I ++L + N D MT L LAA GH VE +L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKN 102
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRN 336
+ D LH A L+ ++ LL+N
Sbjct: 103 GADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + G TPL++AA + ++V LL+N ++
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T L A ++ H + ++ + + + D G TP+H AA G I ++
Sbjct: 77 DHAGMTPLRLAALF-----GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
L + N DK K TA ++ G+ E + L
Sbjct: 132 LLKNGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA GH +IV VL+ ++G + + V+ T LH A G++E+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL------RNGAD-----VNAVDTNGTTPLHLAASLGHLEI 83
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
V++L + D + + G TPLY+AA ++V LL++ ++ + GKTA ++
Sbjct: 84 VEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + YG+TPL+MAA ++V LL N ++
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
NG T LH A H + ++ + + + D G TP++ AAY G I ++
Sbjct: 65 DTNGTTPLHLAASL-----GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 265 LEIDQTATNIADK 277
L N DK
Sbjct: 120 LLKHGADVNAQDK 132
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Query: 83 LEICPALLIQ------VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
LEI LL V+ G TPLH+AA GH +IV VL+ K D
Sbjct: 48 LEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL---KYGAD----------- 93
Query: 137 VNNKKNTA---LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
VN K T L+ A + G++E+V++L + D + + +GKT ++ + + D+
Sbjct: 94 VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGNEDL 149
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
D YG TP+H AA G I ++L + N D + T LHLAA GH VE +L
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKY 90
Query: 303 APEC 306
+
Sbjct: 91 GADV 94
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLF 232
D GK L AA + D V L+ N + G+T LH A H + ++
Sbjct: 1 DLGK-KLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAV-----GHLEIVEVL 54
Query: 233 GRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH 292
R + + D G TP+H AA G I ++L N D +T L+LAA GH
Sbjct: 55 LRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDA-TGITPLYLAAYWGH 113
Query: 293 ARTVETIL 300
VE +L
Sbjct: 114 LEIVEVLL 121
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 318 LHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEF 365
LH A A L+ ++ LLRN +N D G TPLH+ A++ E
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGAD---VNAVDTNGTTPLHLAASLGHLEI 83
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+ GH +I+ VL+ A D++ T LH A + G++E+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW-----------TPLHLAAYRGHLEI 95
Query: 157 VKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
V++L + D +A DY G TPL++AAE ++V LL+ ++ + GKTA +
Sbjct: 96 VEVLLKYGADV--NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Query: 216 V 216
+
Sbjct: 154 I 154
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L+ N ++ G T LH V H + +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVV-----NNGHLEIIE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + +D+ GWTP+H AAY G I ++L N D + T LHLAA
Sbjct: 65 VLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-QGYTPLHLAAED 123
Query: 291 GHARTVETILSLAPEC 306
GH VE +L +
Sbjct: 124 GHLEIVEVLLKYGADV 139
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 81 EILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV 137
EI+E+ VNA G TPLH+AA GH +IV VL+ K D + +
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLL---KYGAD--------VNAM 109
Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
+ + T LH A G++E+V++L + D + + +GKT ++ ++ + D+ L
Sbjct: 110 DYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSH 203
L +A G + V+IL D +AND+ G TPL++ + +++ LL+ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 204 EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
+G T LH A ++G H + ++ + + + D G+TP+H AA G I +
Sbjct: 76 SDKSGWTPLHLAA----YRG-HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVE 130
Query: 264 LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
+L N DK K TA ++ G+ E + L
Sbjct: 131 VLLKYGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
+T LHL GH +E +L A + D W LH A L+ ++ LL+
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD- 105
Query: 341 ILINEGDAKGNTPLHVFA 358
+N D +G TPLH+ A
Sbjct: 106 --VNAMDYQGYTPLHLAA 121
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D G+ L AA + D V L+ N ++ G T LH A + G H + +
Sbjct: 11 GSDLGR-KLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAA----YSG-HLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + +D +G+TP+H AAY G I ++L + N D D MT LHLAA
Sbjct: 65 VLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD-GMTPLHLAAKW 123
Query: 291 GHARTVETIL 300
G+ VE +L
Sbjct: 124 GYLEIVEVLL 133
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 12/120 (10%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA GH +IV VL L D A + T LH A + G++E+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVL-----LKHGADVDASDVFGY------TPLHLAAYWGHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
V++L + D +D G TPL++AA+ ++V LL++ ++ + GKTA ++
Sbjct: 96 VEVLLKNGADVNAMDSD-GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 46/198 (23%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ R L++ A+ QD DE M + +N T LH A + G++E+V++L +
Sbjct: 12 SDLGRKLLEAARAGQD-DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD 224
D S + +G TPL++AA ++V LL+N D
Sbjct: 71 ADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGA------------------------D 105
Query: 225 HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTAL 284
+AM D G TP+H AA G I ++L N DK K TA
Sbjct: 106 VNAM--------------DSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK-TAF 150
Query: 285 HLAAGRGHARTVETILSL 302
++ G+ E + L
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 81 EILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV 137
EI+E+ V+A G TPLH+AA +GH +IV VL+ ++G + + +
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLL------KNGAD-----VNAM 109
Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
++ T LH A G +E+V++L + D + + +GKT ++ ++ + D+
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + +D GKTPL++AA ++V LL++ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A +Y H + ++ + + + TD YG+TP+H AA G I ++
Sbjct: 77 DKMGDTPLHLAALY-----GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
L N DK K TA ++ G+ E + L
Sbjct: 132 LLKYGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 25/161 (15%)
Query: 43 DMAREVIESLLTLQTRNT-ILHINIMCQDAENASTKF------VEEILEICPALL---IQ 92
D+ ++++E+ Q IL N +AE+ S K ++ LEI LL
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNA GDTPLH+AA +GH +IV VL+ ++G + + + T LH A
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLL------KNGAD-----VNATDTYGFTPLHLAA 121
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
G++E+V++L + D + + +GKT ++ ++ + D+
Sbjct: 122 DAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA GH +IV VL L D A + + T LH A G++E+
Sbjct: 47 GYTPLHLAASNGHLEIVEVL-----LKNGADVNASDLTGI------TPLHLAAATGHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
V++L + D ND G TPL++AA+ ++V LL++ ++ + GKTA
Sbjct: 96 VEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ + L++ A+ QD DE M + +N T LH A G++E+V++L +
Sbjct: 12 SDLGKKLLEAARAGQD-DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 165 PDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
D +A+D G TPL++AA + ++V LL++ ++ +G T LH A Y
Sbjct: 71 ADV--NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYG---- 124
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
H + ++ + + + D++G T + +G + ++L+
Sbjct: 125 -HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
+ TD G+TP+H AA +G I ++L + N +D +T LHLAA GH VE
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL-TGITPLHLAAATGHLEIVEV 98
Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335
+L + DN LH A L+ ++ LL+
Sbjct: 99 LLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + ND G TPL++AA + ++V LL+N ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A H + ++ + + + D G TP+H AA +G I ++
Sbjct: 77 DLTGITPLHLAAATG-----HLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 265 LEIDQTATNIADK 277
L N DK
Sbjct: 132 LLKHGADVNAQDK 144
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 81 EILEICPALLIQVNA---KGDTPLHVAAKFGHSDIVRVLI 117
EI+E+ VNA G TPLH+AAK+GH +IV VL+
Sbjct: 94 EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNAK G TPLH+AA+ GH +IV VL+ K D + + T LH A
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGAD--------VNAKDKDGYTPLHLAA 88
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
G++E+V++L + D D G TPL++AA ++V LL+ ++ + GK
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 147
Query: 210 TALHAAV 216
TA ++
Sbjct: 148 TAFDISI 154
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
D+ G+TP+H AA G I ++L N DKD T LHLAA GH VE +L
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKA 102
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335
+ D + LH A L+ ++ LL+
Sbjct: 103 GADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L+ N ++ G T LH A + H + +
Sbjct: 11 GSDLGK-KLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYW-----GHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + D G TP+H AA+ G I ++L + N D D +T LHLAA R
Sbjct: 65 VLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD-DNGITPLHLAANR 123
Query: 291 GHARTVETILSLAPEC 306
GH VE +L +
Sbjct: 124 GHLEIVEVLLKYGADV 139
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA +GH +IV VL+ ++G + + + +T LH A G++E+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLL------KNGAD-----VNAYDTLGSTPLHLAAHFGHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
V++L + D + +D G TPL++AA ++V LL+ ++ + GKTA ++
Sbjct: 96 VEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G D VR+L +A D A ++ T LH A + G++E+V++L +
Sbjct: 21 AARAGRDDEVRIL-----MANGADVNAADVVGW------TPLHLAAYWGHLEIVEVLLKN 69
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
D + + G TPL++AA ++V LL+N ++ + NG T LH A
Sbjct: 70 GADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 81 EILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV 137
EI+E+ VNA G TPLH+AA FGH +IV VL L D A+
Sbjct: 61 EIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL-----LKNGADVNAK------ 109
Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
++ T LH A G++E+V++L + D + + +GKT ++ + + D+
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISINNGNEDL 161
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D +A+ G TPL++AA ++V LL+N ++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A + H + ++ + + + D G TP+H AA G I ++
Sbjct: 77 DTLGSTPLHLAAHF-----GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
L N DK K TA ++ G+ E + L
Sbjct: 132 LLKYGADVNAQDKFGK-TAFDISINNGNEDLAEILQKL 168
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
+ TD G TP+H AA +G+ I ++L + N +D +T LHLAA GH VE
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS-AGITPLHLAAYDGHLEIVEV 90
Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
+L + D W LH A S QL+ ++ LL++ +N DA G T +
Sbjct: 91 LLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDI 144
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + +D G TPL++AA + ++V LL+N ++
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A + G H + ++ + + + D+ GWTP+H AA G+ I ++
Sbjct: 69 DSAGITPLHLAA----YDG-HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 265 L 265
L
Sbjct: 124 L 124
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 23/142 (16%)
Query: 28 KLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICP 87
KLL+AAA G + + + + T T LH+ A N + VE +L+
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLA-----AANGQLEIVEVLLKNGA 63
Query: 88 ALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTA 144
VNA G TPLH+AA GH +IV VL+ D A T
Sbjct: 64 ----DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW-----------TP 108
Query: 145 LHDAMFPGNMEVVKILTREDPD 166
LH A G +E+V++L + D
Sbjct: 109 LHLAALSGQLEIVEVLLKHGAD 130
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 275 ADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL 334
A D +T LHLAA G VE +L + D+ LH A L+ ++ LL
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 335 RNPFARILINEGDAKGNTPLHVFA 358
++ +N D G TPLH+ A
Sbjct: 93 KHGAD---VNAYDRAGWTPLHLAA 113
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 17/208 (8%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
GDTPLH+A G+ V L++ Q G E + + NN + T LH A+ V
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVN--LFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSV 61
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT--SLSHEGPN--GKTAL 212
V++L P + + +G+T ++A E S + LL++ +L E N G TAL
Sbjct: 62 VRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT 272
H AV ++ L R + V + G +P+ +A + + LL + A
Sbjct: 121 HVAV----NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL-LQHGAN 175
Query: 273 NIADKDRKMTALHLAAGRGHARTVETIL 300
A +ALH A+GRG V T++
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLV 203
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 58 RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117
R T LH+ ++ + V +L A + ++ G T H+A + +R L+
Sbjct: 46 RQTPLHLAVI------TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99
Query: 118 DRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKT 177
D A EA N TALH A+ E V++L D G++
Sbjct: 100 DSAAPGTLDLEAR-------NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS 152
Query: 178 PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
PL A E+ S MV LL++ +++ + +G +ALH+A
Sbjct: 153 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNAK G TPLH+AA+ GH +IV VL+ K D + + T LH A
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGAD--------VNAKDKDGYTPLHLAA 76
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
G++E+V++L + D D G TPL++AA ++V LL+ ++ + GK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 210 TALHAAV 216
T A+
Sbjct: 136 TPFDLAI 142
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
D+ G+TP+H AA G I ++L N DKD T LHLAA GH VE +L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKA 90
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTP 353
+ D + LH A L+ ++ LL+ A +N D G TP
Sbjct: 91 GADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQDKFGKTP 137
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 29 LLKAAADGNAE------PFKDMARE----VIESLLTLQTRNTILHINIMCQDAEN----A 74
LLKA AD NA+ P ARE ++E LL +N +D A
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-----DVNAKDKDGYTPLHLA 108
Query: 75 STKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVL 116
+ + EI+E+ VNA+ G TP +A + GH DI VL
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA+ GH ++V++L++ D+ R T LH A G++EV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-----------TPLHLAARNGHLEV 50
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
VK+L D + + G+TPL++AA + ++V LLE
Sbjct: 51 VKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G+TPL++AA + ++V LLE ++ + NG+T LH A + H + +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56
Query: 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
+ + D+ G TP+H AA +G + LL
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
NG+T LH A + H + +L + + D+ G TP+H AA +G + LL
Sbjct: 1 NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
N DK+ + T LHLAA GH V+ +L
Sbjct: 56 EAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLL 88
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARI 341
T LHLAA GH V+ +L + N R LH A + L+ +K LL A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLE---AGA 59
Query: 342 LINEGDAKGNTPLHVFA 358
+N D G TPLH+ A
Sbjct: 60 DVNAKDKNGRTPLHLAA 76
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNAK G TPLH+AA+ GH +IV VL+ A + + T LH A
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL-----------KAGADVNAKDKDGYTPLHLAA 76
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
G++E+V++L + D D G TPL++AA ++V LL+ ++ + GK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 210 TALHAAV 216
T A+
Sbjct: 136 TPFDLAI 142
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
D+ G+TP+H AA G I ++L N DKD T LHLAA GH VE +L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKA 90
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTP 353
+ D + LH A L+ ++ LL+ A +N D G TP
Sbjct: 91 GADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQDKFGKTP 137
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 18/224 (8%)
Query: 66 IMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQD 125
++C A + + ++E + +L + + T LH A GH++IV L+ D
Sbjct: 9 MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 126 GDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES 185
D+A + LH A G E+VK L + + N G TPL+ AA
Sbjct: 69 KDDAGW-----------SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASK 116
Query: 186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQY 245
++ + LLE + + TA+H A + K M + K+ + D
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK-----MIHILLYYKASTNIQDTE 171
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
G TP+H A + LL + I +K+ K T L +A G
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK-TPLQVAKG 214
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
+ G +E +K D + +T L+ A + +++V LL+ ++ + G
Sbjct: 15 YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
+ LH A G ++ L G K + + +Q G TP+HYAA ++ I +L ++
Sbjct: 75 SPLHIAA----SAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVML-LEG 128
Query: 270 TATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQD 329
A A + TA+H AA +G+ + + +L Y AS +QD
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILL-------------------YYKASTNIQD 169
Query: 330 LKPLLRNPFARILINEGDAKGNTPLHV 356
+GNTPLH+
Sbjct: 170 ------------------TEGNTPLHL 178
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 254 AYHGKYW-INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDN 312
AY GK + + + D++ D+D + TALH A GH VE +L L + D+
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-KDD 71
Query: 313 RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
W+ LH A ++ + + +K LL +N + G TPLH A+
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQ---VNAVNQNGCTPLHYAAS 115
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 18/224 (8%)
Query: 66 IMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQD 125
++C A + + ++E + +L + + T LH A GH++IV L+ D
Sbjct: 10 MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 126 GDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES 185
D+A + LH A G E+VK L + + N G TPL+ AA
Sbjct: 70 KDDAGW-----------SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASK 117
Query: 186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQY 245
++ + LLE + + TA+H A + K M + K+ + D
Sbjct: 118 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK-----MIHILLYYKASTNIQDTE 172
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
G TP+H A + LL + I +K+ K T L +A G
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK-TPLQVAKG 215
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
+ G +E +K D + +T L+ A + +++V LL+ ++ + G
Sbjct: 16 YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 75
Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
+ LH A G ++ L G K + + +Q G TP+HYAA ++ I +L ++
Sbjct: 76 SPLHIAA----SAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVML-LEG 129
Query: 270 TATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQD 329
A A + TA+H AA +G+ + + +L Y AS +QD
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILL-------------------YYKASTNIQD 170
Query: 330 LKPLLRNPFARILINEGDAKGNTPLHV 356
+GNTPLH+
Sbjct: 171 ------------------TEGNTPLHL 179
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 254 AYHGKYW-INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDN 312
AY GK + + + D++ D+D + TALH A GH VE +L L + D+
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-KDD 72
Query: 313 RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
W+ LH A ++ + + +K LL +N + G TPLH A+
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQ---VNAVNQNGCTPLHYAAS 116
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
I + N++ + L +A G++E VK L TPL+ AA +V
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
LL++ + + G LH A Y H+ + +L + +++ V D + +TP+H A
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSY-----GHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
Query: 254 AYHGKYWINDLL 265
A GKY I LL
Sbjct: 120 AAKGKYEICKLL 131
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 39/176 (22%)
Query: 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVE-- 80
S+ D +LL+AA G+ E K L T+Q+ N C+D E + +
Sbjct: 10 SEADRQLLEAAKAGDVETVK--------KLCTVQSVN--------CRDIEGRQSTPLHFA 53
Query: 81 ------EILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAAR 131
++E V+AK G PLH A +GH ++ +L+
Sbjct: 54 AGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG----------- 102
Query: 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESES 187
++ + + K T LH+A G E+ K+L + D P N G TPL + + ++
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDT 157
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
D+ G P+H A +G Y + +LL N+AD K T LH AA +G + +L
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLL 132
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
M N++ + L +A G++E VK L TPL+ AA +V LL
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 196 ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255
++ + + G LH A Y H+ + +L + +++ V D + +TP+H AA
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSY-----GHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 256 HGKYWINDLL 265
GKY I LL
Sbjct: 118 KGKYEICKLL 127
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 39/180 (21%)
Query: 19 AANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKF 78
A S+ D +LL+AA G+ E K L T+Q+ N C+D E +
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVK--------KLCTVQSVN--------CRDIEGRQSTP 45
Query: 79 VE--------EILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD 127
+ ++E V+AK G PLH A +GH ++ +L+
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG------- 98
Query: 128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESES 187
++ + + K T LH+A G E+ K+L + D P N G TPL + + ++
Sbjct: 99 ----AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDT 153
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
D+ G P+H A +G Y + +LL N+AD K T LH AA +G + +L
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLL 128
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 19/226 (8%)
Query: 65 NIM-CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLA 123
NIM C A + ++E + +L + + T LH A GH++IV L+
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 124 QDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA 183
D D+A + LH A G E+VK L + + + N G TPL+ AA
Sbjct: 67 NDKDDAGW-----------SPLHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAA 114
Query: 184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTD 243
++ + LLE + + TA+H A + K M + K+ + D
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK-----MVHILLFYKASTNIQD 169
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
G TP+H A + L + I +K+ K T L +A G
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVAKG 214
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 254 AYHGKYWINDLLE---IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELV 310
AY GK +++L E D++ D+D + TALH A GH VE +L L +
Sbjct: 14 AYSGK--LDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-K 69
Query: 311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
D+ W+ LH A ++ + + +K LL +N + G TPLH A+
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALL---VKGAHVNAVNQNGCTPLHYAAS 115
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 34/184 (18%)
Query: 63 HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRA-- 120
+ + + A TK V+EIL+ + +V+ +G+TPL++A +I + LIDR
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 121 --------------KLAQDGDEAARQMIRMVN---NKKNTALHDAMFP----GNMEVVKI 159
AQ E M++ NK N +A+ P G+++ VK+
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 160 L---TREDPDYPYSANDYGKTPLYMAAESESS-----DMVLTLLENCTSLSHEGPNGKTA 211
L RED D+ ND+G T L A D+V L+EN S + +G+TA
Sbjct: 125 LLEDGREDIDFQ---NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181
Query: 212 LHAA 215
+ A
Sbjct: 182 MDYA 185
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
V+ G TPLH+AA GH +IV VL+ K D D A T LH A G
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLL---KHGADVDAADVYGF--------TPLHLAAMTG 91
Query: 153 NMEVVKILTREDPDYPYSANDY---GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
++E+V++L + Y N + G TPL++AA+ ++V LL+ ++ + GK
Sbjct: 92 HLEIVEVLLK----YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 210 TALHAAV 216
TA ++
Sbjct: 148 TAFDISI 154
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G D VR+LI A + V+N T LH A G++E+V++L +
Sbjct: 21 AARAGQDDEVRILI-----------ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
D +A+ YG TPL++AA + ++V LL+ ++ G T LH A
Sbjct: 70 GADVD-AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L+ N ++ G T LH A + H + +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS-----GHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + D YG+TP+H AA G I ++L N D T LHLAA
Sbjct: 65 VLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDM-TGSTPLHLAADE 123
Query: 291 GHARTVETIL 300
GH VE +L
Sbjct: 124 GHLEIVEVLL 133
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + ++ G TPL++AA S ++V LL++ +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A M H + ++ + + + D G TP+H AA G I ++
Sbjct: 77 DVYGFTPLHLAAMT-----GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 265 L 265
L
Sbjct: 132 L 132
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
+T LHLAA GH VE +L + + D + LH A + L+ ++ LL+
Sbjct: 48 LTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD- 105
Query: 341 ILINEGDAKGNTPLHVFA 358
+N D G+TPLH+ A
Sbjct: 106 --VNAFDMTGSTPLHLAA 121
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 81 EILEICPALLIQVNA---KGDTPLHVAAKFGHSDIVRVLI 117
EI+E+ VNA G TPLH+AA GH +IV VL+
Sbjct: 94 EIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 19/226 (8%)
Query: 65 NIM-CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLA 123
NIM C A + ++E + +L + + T LH A GH++IV L+
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 124 QDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA 183
D D+A + LH A G E+VK L + + + N G TPL+ AA
Sbjct: 67 NDKDDAGW-----------SPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAA 114
Query: 184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTD 243
++ + LLE + + TA+H A + K M + K+ + D
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK-----MVHILLFYKASTNIQD 169
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
G TP+H A + L + I +K+ K T L +A G
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVAKG 214
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 254 AYHGKYWINDLLE---IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELV 310
AY GK +++L E D++ D+D + TALH A GH VE +L L +
Sbjct: 14 AYSGK--LDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-K 69
Query: 311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
D+ W+ LH A ++ + +K LL +N + G TPLH A+
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALL---VKGAHVNAVNQNGCTPLHYAAS 115
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
N++ + L +A G++E VK L TPL+ AA +V LL++
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 198 CTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
+ + G LH A Y H+ + +L + +++ V D + +TP+H AA G
Sbjct: 67 GADVHAKDKGGLVPLHNACSY-----GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 258 KYWINDLL 265
KY I LL
Sbjct: 122 KYEICKLL 129
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 39/183 (21%)
Query: 16 GSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENAS 75
G+ + S+ D +LL+AA G+ E K L T+Q+ N C+D E
Sbjct: 1 GAMGSGNSEADRQLLEAAKAGDVETVK--------KLCTVQSVN--------CRDIEGRQ 44
Query: 76 TKFVE--------EILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQ 124
+ + ++E V+AK G PLH A +GH ++ +L+
Sbjct: 45 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG---- 100
Query: 125 DGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE 184
++ + + K T LH+A G E+ K+L + D P N G TPL + +
Sbjct: 101 -------AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 152
Query: 185 SES 187
++
Sbjct: 153 GDT 155
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
D+ G P+H A +G Y + +LL N+AD K T LH AA +G + +L
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLL 130
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 40/196 (20%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
Q+ GD+ LH+A + +I + K GD A + NN + T LH A+
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVK----GDLA---FLNFQNNLQQTPLHLAVIT 55
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
E+ + L D P + G TPL++A E V L ++CT+ P+
Sbjct: 56 NQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-----PH---- 105
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH S+LK T+ G T +H A+ HG I +LL
Sbjct: 106 LH-----------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142
Query: 272 TNIADKDRKMTALHLA 287
N + TALHLA
Sbjct: 143 VNAQEPCNGRTALHLA 158
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
+G+TPLH+A + G V VL +++ N +T LH A G +
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPH-----LHSILKATNYNGHTCLHLASIHGYLG 131
Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
+V++L D G+T L++A + ++ D+V LL+
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 40/192 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
GD+ LH+A + +I + K GD A + NN + T LH A+ E+
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVK----GDLA---FLNFQNNLQQTPLHLAVITNQPEI 57
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
+ L D P + G TPL++A E V L ++CT+ P+ LH
Sbjct: 58 AEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-----PH----LH--- 104
Query: 217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIAD 276
S+LK T+ G T +H A+ HG I +LL N +
Sbjct: 105 --------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 144
Query: 277 KDRKMTALHLAA 288
TALHLA
Sbjct: 145 PCNGRTALHLAV 156
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
+G+TPLH+A + G V VL +++ N +T LH A G +
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPH-----LHSILKATNYNGHTCLHLASIHGYLG 128
Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
+V++L D G+T L++A + ++ D+V LL+
Sbjct: 129 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G+TPLH AAK GH++ V+ L L++ D AR + NT LH A G+ E+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL-----LSKGADVNAR------SKDGNTPLHLAAKNGHAEI 57
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
VK+L + D + D G TP ++A ++ ++V L
Sbjct: 58 VKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVKLL 94
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 14/77 (18%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNA+ G+TPLH+AAK GH++IV++L LA+ D AR + NT H A
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLL-----LAKGADVNAR------SKDGNTPEHLAK 83
Query: 150 FPGNMEVVKILTREDPD 166
G+ E+VK+L + D
Sbjct: 84 KNGHHEIVKLLDAKGAD 100
Score = 35.0 bits (79), Expect = 0.073, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G TPL+ AA++ ++ V LL ++ +G T LH A K H + +L
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA-----KNGHAEIVKLLLA 63
Query: 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
K + + + G TP H A +G + I LL+
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
G TP+H AA +G L N KD T LHLAA GHA V+ +L+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLA 63
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
+G T LH A K H + K + + + G TP+H AA +G I LL
Sbjct: 8 DGNTPLHNAA-----KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRW 315
N KD T HLA GH V+ + + + V+ R W
Sbjct: 63 AKGADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGAD----VNARSW 106
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSH 203
L +A G + V+ILT D +ANDY G TPL++AA ++V LL+N ++
Sbjct: 18 LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 204 EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
G G+T LH A DH + ++ + + + D++G T + +G D
Sbjct: 76 TGNTGRTPLHLAAW-----ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN---ED 127
Query: 264 LLEIDQ 269
L EI Q
Sbjct: 128 LAEILQ 133
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AA GH +IV VL+ ++G + + N T LH A + ++E+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL------KNGAD-----VNATGNTGRTPLHLAAWADHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
V++L + D + + +GKT ++ ++ + D+
Sbjct: 96 VEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
+ D +G TP+H AA G I ++L + N A + T LHLAA H VE
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNTGRTPLHLAAWADHLEIVEV 98
Query: 299 IL 300
+L
Sbjct: 99 LL 100
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L N ++ G T LH A M H + +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAML-----GHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAY 255
+ + + + T G TP+H AA+
Sbjct: 65 VLLKNGADVNATGNTGRTPLHLAAW 89
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
++ G TPLH+AA+ GH +IV VL+ K D + +N T LH A G
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLL---KYGAD--------VNAEDNFGITPLHLAAIRG 91
Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
++E+V++L + D + + +GKT ++ ++ + D+
Sbjct: 92 HLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
D+ G TP+H AA G I ++L + A A+ + +T LHLAA RGH VE +L
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVL-LKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L+ N ++ +G T LH A H + +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQL-----GHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + D +G TP+H AA G I ++L N DK K TA ++
Sbjct: 65 VLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGK-TAFDISIDN 123
Query: 291 GHARTVETILSL 302
G+ E + L
Sbjct: 124 GNEDLAEILQKL 135
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D D G TPL++AA+ ++V LL+ ++ E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G T LH A + H + ++ + + + D++G T + +G + ++
Sbjct: 77 DNFGITPLHLAAIR-----GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 265 LE 266
L+
Sbjct: 132 LQ 133
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
+R + + T LH A +++VK + D TPL+ A MV+
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
L++ S G + +H A + H ++ K + + DQ G TP+ +A
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQF-----GHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Query: 254 AYHGKYWIN--DLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVD 311
AY + ++ LL + N+ DK K TALH A G+ T++SL E VD
Sbjct: 150 AYR-THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT----TVISLLLEAGANVD 204
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 25/128 (19%)
Query: 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAK----LAQDG-------------DEAARQMIR 135
++ +G + +H+AA+FGH+ IV LI + + + Q+G + R ++
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 136 M-----VNNK--KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESS 188
+ +K KNTALH A+ GN V+ +L + + N G++ L +A + ++
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQRKNV 223
Query: 189 DMVLTLLE 196
M+ L E
Sbjct: 224 WMINHLQE 231
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 89 LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKK 141
LL+Q V+AK G PLH A +GH ++ +L+ + ++ +
Sbjct: 76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA-----------CVNAMDLWQ 124
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE--------------- 186
T LH+A +EV +L D P N +GK+ + MA E
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 187 -----------SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK 235
+ L ++ SHE TALH AV K A +L RK
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHE-----TALHCAVASLHPKRKQVA--ELLLRK 236
Query: 236 KSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHART 295
+ + ++ TP+H AA + ++L N D TALH AA GH +T
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD-SLGQTALHRAALAGHLQT 295
Query: 296 VETILS 301
+LS
Sbjct: 296 CRLLLS 301
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 7/131 (5%)
Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK-TALHAAVMYFDFKGDHHAMRQ 230
+Y K L AA S + + ++ LL H K T LH A Y + + Q
Sbjct: 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR-----IVQ 75
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
L + + + D+ G P+H A +G Y + +LL N D + T LH AA +
Sbjct: 76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLHEAASK 134
Query: 291 GHARTVETILS 301
+LS
Sbjct: 135 NRVEVCSLLLS 145
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 29 LLKAAADGN-AEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICP 87
LL+AA + + A+ K +A E+I + Q+ T LH + + + K V E+L
Sbjct: 182 LLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVA---SLHPKRKQVAELLLRKG 237
Query: 88 ALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHD 147
A + + N TPLHVAA+ H+D++ VL + +++ TALH
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA-----------KMNALDSLGQTALHR 286
Query: 148 AMFPGNMEVVKIL 160
A G+++ ++L
Sbjct: 287 AALAGHLQTCRLL 299
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ + L++ + QD DE M + +++ T LH A G++E+V++L +
Sbjct: 12 SDLGKKLLEATRAGQD-DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
D S + +G+TPL++AA ++V LLE ++ + GKTA ++
Sbjct: 71 ADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AAK GH +IV VL+ D R T LH A G++E+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-----------TPLHLAATVGHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
V++L D + + +GKT ++ ++ + D+
Sbjct: 96 VEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
D G TP+H AA G I ++L N +D + T LHLAA GH VE +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-TPLHLAATVGHLEIVEVLLEY 102
Query: 303 APEC 306
+
Sbjct: 103 GADV 106
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L A + D V L+ N ++ G T LH A K H + +
Sbjct: 11 GSDLGK-KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA-----KRGHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
+ + + + +D +G TP+H AA G I ++L
Sbjct: 65 VLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 26/197 (13%)
Query: 68 CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD 127
++ E+++ + + ++L L ++ G+T LH+AA+F +D + L+D A D
Sbjct: 22 IENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQD 81
Query: 128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESES 187
R T LH A+ M V +IL R + G TPL +AA
Sbjct: 82 NTGR-----------TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 130
Query: 188 SDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD-----HHAMRQLFGRKKSLLKVT 242
MV L+ ++ +GKTALH A + + HHA R
Sbjct: 131 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD----------AQ 180
Query: 243 DQYGWTPIHYAAYHGKY 259
D TP+ AA G Y
Sbjct: 181 DDKDETPLFLAAREGSY 197
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPL +AA+ +V LI D D I +N TALH A N E
Sbjct: 118 GTTPLILAARLAIEGMVEDLI-----TADAD------INAADNSGKTALHWAAAVNNTEA 166
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
V IL + + +D +TPL++AA S + LL+N
Sbjct: 167 VNILLMHHANRD-AQDDKDETPLFLAAREGSYEASKALLDN 206
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 26/148 (17%)
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSAND------------YGKTPLYMAAESES 187
+ ++ALH A+ +++ VK+L D A +G+ PL +AA ++
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 188 SDMVLTLLEN---CTSLSHEGPNGKTALHAAVMYFDFKGDHHA--------MRQLFGR-- 234
D+V LLEN SL G T LHA VM D ++ A + Q+ R
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208
Query: 235 -KKSLLKVTDQYGWTPIHYAAYHGKYWI 261
L ++++ G TP+ AA GK I
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEI 236
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 59 NTILHINIMCQDAENASTKFVEEILE--------ICPALLIQ--VNAKGDTPLHVAAKFG 108
NT+LH +M D ++ V + + +CP + ++ N +G TPL +AAK G
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232
Query: 109 HSDIVRVLIDR 119
+I R ++ R
Sbjct: 233 KIEIFRHILQR 243
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
TPLH+AA GH++IV VL L D A+ M++M TALH A + EVV+
Sbjct: 69 TPLHMAASEGHANIVEVL-----LKHGADVNAKDMLKM------TALHWATEHNHQEVVE 117
Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
+L + D ++ + + KT ++ ++ + D+
Sbjct: 118 LLIKYGADV-HTQSKFCKTAFDISIDNGNEDL 148
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G +PLH+AA++GH VL+ RA +++D AR + T LH A G+ +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLL-RAGVSRD----ARTKV------DRTPLHMAASEGHANI 82
Query: 157 VKILTREDPDYPYSANDYGK-TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
V++L + D +A D K T L+ A E ++V L++ + + KTA +
Sbjct: 83 VEVLLKHGAD--VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
Query: 216 V 216
+
Sbjct: 141 I 141
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 241 VTDQYGWTPIHYAAYHGKYWINDLL---EIDQTATNIADKDRKMTALHLAAGRGHARTVE 297
TD G +P+H AA +G + ++L + + A D+ T LH+AA GHA VE
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR----TPLHMAASEGHANIVE 84
Query: 298 TIL 300
+L
Sbjct: 85 VLL 87
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLF 232
D GK L AA + D V L+ N + + G + LH A Y F +R
Sbjct: 1 DLGK-KLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRA-- 56
Query: 233 GRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH 292
G + D+ TP+H AA G I ++L N D KMTALH A H
Sbjct: 57 GVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNH 112
Query: 293 ARTVETIL 300
VE ++
Sbjct: 113 QEVVELLI 120
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEI 267
G+T LH A + KGD ++ L + S V D GWTP+H A HG + +LL
Sbjct: 10 GETLLHIASI----KGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 268 DQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
+ N + LH AA GH V+ +LS
Sbjct: 65 HKALVNTTGYQND-SPLHDAAKNGHVDIVKLLLS 97
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH A GH +V +L+ + ++ + ++ LHDA G++++
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH-----------KALVNTTGYQNDSPLHDAAKNGHVDI 91
Query: 157 VKIL 160
VK+L
Sbjct: 92 VKLL 95
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 77 KFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117
K VE +L+ AL+ + D+PLH AAK GH DIV++L+
Sbjct: 57 KVVELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 26/148 (17%)
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSAND------------YGKTPLYMAAESES 187
+ ++ALH A+ +++ VK+L D A +G+ PL +AA ++
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 188 SDMVLTLLEN---CTSLSHEGPNGKTALHAAVMYFDFKGDHHA--------MRQLFGR-- 234
D+V LLEN SL G T LHA VM D ++ A + Q+ R
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 221
Query: 235 -KKSLLKVTDQYGWTPIHYAAYHGKYWI 261
L ++++ G TP+ AA GK I
Sbjct: 222 PTVQLEEISNHQGLTPLKLAAKEGKIEI 249
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 59 NTILHINIMCQDAENASTKFVEEILE--------ICPALLIQ--VNAKGDTPLHVAAKFG 108
NT+LH +M D ++ V + + +CP + ++ N +G TPL +AAK G
Sbjct: 186 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 245
Query: 109 HSDIVRVLIDR 119
+I R ++ R
Sbjct: 246 KIEIFRHILQR 256
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ + L++ + QD DE M + +++ T LH A G++E+V++L +
Sbjct: 12 SDLGKKLLEATRAGQD-DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
D S + +G+TPL++AA ++V LLE ++ + GKTA ++
Sbjct: 71 ADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AAK GH +IV VL+ D R T LH A G++E+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR-----------TPLHLAATVGHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
V++L D + + +GKT ++ ++ + D+
Sbjct: 96 VEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLL---EIDQTATNIADKDRKMTALHLAAGRGHARTVETI 299
D G TP+H AA G I ++L D A++I + T LHLAA GH VE +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR----TPLHLAATVGHLEIVEVL 99
Query: 300 LSLAPEC 306
L +
Sbjct: 100 LEYGADV 106
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L A + D V L+ N ++ G T LH A K H + +
Sbjct: 11 GSDLGK-KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA-----KRGHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
+ + + + +D +G TP+H AA G I ++L
Sbjct: 65 VLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 234 RKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHA 293
+++++ TD+ G+TP+ +AA HG+ + + L + + K R+ +AL LA +G+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYT 98
Query: 294 RTVETILSLAPECFELVDNRRWNF---LHYAVASFQLQDLKPLLRN 336
V+ +L +C V+ WN L YAV ++ +K LL +
Sbjct: 99 DIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 234 RKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHA 293
+++++ TD+ G+TP+ +AA HG+ + + L + + K R+ +AL LA +G+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYT 82
Query: 294 RTVETILSLAPECFELVDNRRWNF---LHYAVASFQLQDLKPLLRN 336
V+ +L +C V+ WN L YAV ++ +K LL +
Sbjct: 83 DIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 68 CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD 127
C++ +A V E+L + A + +N DTPLH+AA GH DIV+ L+
Sbjct: 42 CREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL---------- 87
Query: 128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPL 179
+ I VN N LH A F G +V + L + N YG+ P+
Sbjct: 88 -QYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPV 137
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 222 KGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKM 281
+G+ A+R ++ L D +G++P+H+A G+ + ++L + N+ ++
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD- 68
Query: 282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNF-LHYAVASFQLQDLKPLLRN 336
T LHLAA GH V+ +L + + N N LHYA Q Q + L+ N
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAV--NEHGNVPLHYACFWGQDQVAEDLVAN 122
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
GN V++ + +D+G +PL+ A S +V L+ ++ T
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH A + H + Q + K+ + +++G P+HYA + G+ + + L +
Sbjct: 71 LHLAASH-----GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125
Query: 272 TNIADKDRKM 281
+I +K +M
Sbjct: 126 VSICNKYGEM 135
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 50/164 (30%)
Query: 90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
L Q + G +PLH A + G S +V +LI R AR
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRG---------AR------------------ 59
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
+ ++ R D TPL++AA D+V LL+ ++ +G
Sbjct: 60 -------INVMNRGD-----------DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
LH A F G L +L+ + ++YG P+ A
Sbjct: 102 VPLHYAC----FWGQDQVAEDLVA-NGALVSICNKYGEMPVDKA 140
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 68 CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD 127
C++ +A V E+L + A + +N DTPLH+AA GH DIV+ L+
Sbjct: 47 CREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ--------- 93
Query: 128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPL 179
+ I VN N LH A F G +V + L + N YG+ P+
Sbjct: 94 --YKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPV 142
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 222 KGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKM 281
+G+ A+R ++ L D +G++P+H+A G+ + ++L + N+ ++
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD- 73
Query: 282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNF-LHYAVASFQLQDLKPLLRN 336
T LHLAA GH V+ +L + + N N LHYA Q Q + L+ N
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAV--NEHGNVPLHYACFWGQDQVAEDLVAN 127
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
GN V++ + +D+G +PL+ A S +V L+ ++ T
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
LH A + H + Q + K+ + +++G P+HYA + G+ + + L +
Sbjct: 76 LHLAASH-----GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Query: 272 TNIADKDRKM 281
+I +K +M
Sbjct: 131 VSICNKYGEM 140
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 50/164 (30%)
Query: 90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
L Q + G +PLH A + G S +V +LI R AR
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRG---------AR------------------ 64
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
+ ++ R D TPL++AA D+V LL+ ++ +G
Sbjct: 65 -------INVMNRGD-----------DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
LH A F G L +L+ + ++YG P+ A
Sbjct: 107 VPLHYAC----FWGQDQVAEDLVA-NGALVSICNKYGEMPVDKA 145
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 234 RKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHA 293
+++++ TD+ G+TP+ +AA HG+ + + L + + K R+ +AL LA +G+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYT 80
Query: 294 RTVETILSLAPECFELVDNRRWNF---LHYAVASFQLQDLKPLLRN 336
V+ +L +C V+ WN L YAV ++ +K LL +
Sbjct: 81 DIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 39/191 (20%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
Q A G+T LH+AA + + + VL++ A E + + + TALH A+
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAP------ELVFEPMTSELYEGQTALHIAVIN 85
Query: 152 GNMEVVKILTREDPDY------------PYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
N+ +V+ L P++ YG+ PL AA S ++V L+E+
Sbjct: 86 QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145
Query: 200 SLSHEGPNGKTALH----------AAVMY---FDFKGDHHAMRQLFGRKKSLLKVTDQYG 246
+ + G T LH A MY + G H KSL V + G
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL--------KSLELVPNNQG 197
Query: 247 WTPIHYAAYHG 257
TP A G
Sbjct: 198 LTPFKLAGVEG 208
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 46/193 (23%)
Query: 176 KTPLYMAAESESSDMVLTLL--ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFG 233
++PL +AA+ + LL E C + G G+TALH A +Y + + AM
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGC-EVHQRGAMGETALHIAALYDNLEA---AM----- 54
Query: 234 RKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG-- 291
L++ + + P+ Y G QTA +IA ++ + + RG
Sbjct: 55 ---VLMEAAPELVFEPMTSELYEG-----------QTALHIAVINQNVNLVRALLARGAS 100
Query: 292 -HARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEG---- 346
AR ++ P N ++Y L + R+LI G
Sbjct: 101 VSARATGSVFHYRPH----------NLIYY--GEHPLSFAACVGSEEIVRLLIEHGADIR 148
Query: 347 --DAKGNTPLHVF 357
D+ GNT LH+
Sbjct: 149 AQDSLGNTVLHIL 161
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ + L++ A+ QD DE M + + K NT LH A ++E+V++L +
Sbjct: 12 SDLGKKLLEAARAGQD-DEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
D ND G TPL++AA ++V LL++ ++ + GKTA ++
Sbjct: 71 ADVNAHDND-GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L+ N ++ G T LH A Y DH + +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADY-----DHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + D G TP+H AA G I ++L N DK K TA ++
Sbjct: 65 VLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGK-TAFDISIDN 123
Query: 291 GHARTVETILSL 302
G+ E + L
Sbjct: 124 GNEDLAEILQKL 135
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSH 203
L +A G + V+IL D +AND G TPL++AA+ + ++V LL++ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA 75
Query: 204 EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
+G T LH A ++ H + ++ + + + D++G T + +G + +
Sbjct: 76 HDNDGSTPLHLAALFG-----HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 264 LLE 266
+L+
Sbjct: 131 ILQ 133
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 81 EILEICPALLIQVNA---KGDTPLHVAAKFGHSDIVRVLI 117
EI+E+ VNA G TPLH+AA FGH +IV VL+
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G TPLH+AAK GH +IV VL L D AR + T LH A G++E+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVL-----LKHGADVNARDIW------GRTPLHLAATVGHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
V++L D + + +GKT ++ ++ + D+
Sbjct: 96 VEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
SD+ + L++ + QD DE M + +++ T LH A G++E+V++L +
Sbjct: 12 SDLGKKLLEATRAGQD-DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 165 PDYPYSAND-YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
D +A D +G+TPL++AA ++V LLE ++ + GKTA ++
Sbjct: 71 ADV--NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLL---EIDQTATNIADKDRKMTALHLAAGRGHARTVETI 299
D G TP+H AA G I ++L D A +I + T LHLAA GH VE +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR----TPLHLAATVGHLEIVEVL 99
Query: 300 LSLAPEC 306
L +
Sbjct: 100 LEYGADV 106
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L A + D V L+ N ++ G T LH A K H + +
Sbjct: 11 GSDLGK-KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA-----KRGHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
+ + + + D +G TP+H AA G I ++L
Sbjct: 65 VLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 71/181 (39%), Gaps = 27/181 (14%)
Query: 108 GHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDY 167
G +D + +L+D A+ + K TALH A+ N +V +L D
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADV 127
Query: 168 PYSAND-------------YGKTPLYMAAESESSDMVLTLLENC---TSLSHEGPNGKTA 211
+AN +G+ PL +AA + +V LL+N +S G T
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187
Query: 212 LHAAVMYFDFKGDHHAMRQ-------LFGRK----KSLLKVTDQYGWTPIHYAAYHGKYW 260
LHA V D D+ + G K L ++T++ G TP+ AA GK
Sbjct: 188 LHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247
Query: 261 I 261
+
Sbjct: 248 V 248
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
+P+H AA GH +R LI + + ++ + LH+A G++ VK
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQG-----------WAVNIITADHVSPLHEACLGGHLSCVK 53
Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
IL + D+ TPL+ A S S D V LL++ S+ E
Sbjct: 54 ILLKHGAQVNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
V A TPL A G D V +L+ Q + A + +H+A G
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA------------SPIHEAARRG 112
Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
++E V L + + + G TPLY+A E++ V LLE+ ++ +G + L
Sbjct: 113 HVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 170
Query: 213 HA---------AVMYFDFKGDHHA 227
HA A + DF D A
Sbjct: 171 HAVARTASEELACLLMDFGADTQA 194
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 247 WTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
W+P+H AA HG L A NI D ++ LH A GH V+ +L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHLSCVKILL 56
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 25/217 (11%)
Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
++++V+ L + + + G TPL+ A + D+V LL + NG T
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT 272
A + K + +LF K + + D YG+T AA +GK L
Sbjct: 77 LLAAIAGSVK-----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 273 NIADKDRK---------MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVA 323
N+ K ++ TAL AA +GH ++ +L DN N L +A+
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Query: 324 SFQLQDLKPLLRNPFARILINEG------DAKGNTPL 354
S D++ + +L++ G +G TPL
Sbjct: 192 SSDDSDVEAI-----THLLLDHGADVNVRGERGKTPL 223
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G T L AA+ GH +++++L+D ++ D + +N AL A+ +
Sbjct: 148 GATALMDAAEKGHVEVLKILLD--EMGAD--------VNACDNMGRNALIHALLSSDDSD 197
Query: 157 VKILTREDPDYPYSAN---DYGKTPLYMAAESESSDMVLTLLENC-TSLSHEGPNGKTAL 212
V+ +T D+ N + GKTPL +A E + +V LLE ++ +GKTAL
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Query: 213 HAAV 216
AV
Sbjct: 258 LLAV 261
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 41/258 (15%)
Query: 66 IMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI----DRAK 121
++ + +N V+++LE + Q G TPLH A + DIV +L+ D
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 122 LAQDGDE--------AARQMIRMVNNKKN----------TALHDAMFPGNMEVVKIL--- 160
++G + +++++ +K TA +A G ++ +K L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 161 ---------TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN-GKT 210
T+ED + G T L AAE +++ LL+ + + N G+
Sbjct: 128 GANVNLRRKTKEDQERLRKG---GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLEIDQ 269
AL A++ D D A+ L + + V + G TP+ A + LLE +
Sbjct: 185 ALIHALLSSD-DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243
Query: 270 TATNIADKDRKMTALHLA 287
N D D K TAL LA
Sbjct: 244 IEINDTDSDGK-TALLLA 260
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 25/217 (11%)
Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
++++V+ L + + + G TPL+ A + D+V LL + NG T
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT 272
A + K + +LF K + + D YG+T AA +GK L
Sbjct: 97 ILAAIAGSVK-----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 273 NIADKDRK---------MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVA 323
N+ K ++ TAL AA +GH ++ +L DN N L +A+
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 211
Query: 324 SFQLQDLKPLLRNPFARILINEG------DAKGNTPL 354
S D++ + +L++ G +G TPL
Sbjct: 212 SSDDSDVEAI-----THLLLDHGADVNVRGERGKTPL 243
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
G T L AA+ GH +++++L+D ++ D + +N AL A+ +
Sbjct: 168 GATALMDAAEKGHVEVLKILLD--EMGAD--------VNACDNMGRNALIHALLSSDDSD 217
Query: 157 VKILTREDPDYPYSAN---DYGKTPLYMAAESESSDMVLTLLEN-CTSLSHEGPNGKTAL 212
V+ +T D+ N + GKTPL +A E + +V LLE ++ +GKTAL
Sbjct: 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
Query: 213 HAAV 216
AV
Sbjct: 278 LLAV 281
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 43/295 (14%)
Query: 66 IMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI----DRAK 121
++ + +N V+++LE + Q G TPLH A + DIV +L+ D
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 122 LAQDGDE--------AARQMIRMVNNKKN----------TALHDAMFPGNMEVVKIL--- 160
++G + +++++ +K TA +A G ++ +K L
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 147
Query: 161 ---------TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN-GKT 210
T+ED + G T L AAE +++ LL+ + + N G+
Sbjct: 148 GANVNLRRKTKEDQERLRKG---GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLEIDQ 269
AL A++ D D A+ L + + V + G TP+ A + LLE +
Sbjct: 205 ALIHALLSSD-DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263
Query: 270 TATNIADKDRKMTALHLAAGRGHARTVETIL--SLAPECFELVDNRRWNFLHYAV 322
N D D K TAL LA + E + + +C +LV R N+ H V
Sbjct: 264 IEINDTDSDGK-TALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLV 317
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L+ N ++ E G T LH A M DH + +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMN-----DHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + D G TP+H A +G I ++L N DK K TA ++
Sbjct: 65 VLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGK-TAFDISIDN 123
Query: 291 GHARTVETILSL 302
G+ E + L
Sbjct: 124 GNEDLAEILQKL 135
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + G TPL++AA ++ ++V LL+N ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
G+T LH MY H + ++ + + + D++G T + +G + ++
Sbjct: 77 DAIGETPLHLVAMYG-----HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 265 LE 266
L+
Sbjct: 132 LQ 133
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 15/101 (14%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNA+ G TPLH+AA H +IV VL+ ++G + + ++ T LH
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLL------KNGAD-----VNAIDAIGETPLHLVA 88
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
G++E+V++L + D + + +GKT ++ ++ + D+
Sbjct: 89 MYGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 83 LEICPALLIQ------VNAKGDTPLHVAAKFGHSDIVRVLI 117
LEI LL ++A G+TPLH+ A +GH +IV VL+
Sbjct: 60 LEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLL 100
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
Q + G+T LH+AA++ SD + L++ + A + +N T LH A+
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADAN-----------IQDNMGRTPLHAAVSA 68
Query: 152 GNMEVVKILTREDP-DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210
V +IL R D +D G TPL +AA M+ L+ + ++ GK+
Sbjct: 69 DAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127
Query: 211 ALH 213
ALH
Sbjct: 128 ALH 130
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G+T L++AA SD LLE + + G+T LHAAV D + Q+ R
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-----SADAQGVFQILIR 79
Query: 235 KKSL-LKVTDQYGWTPIHYAAYHGKYWINDLLE--IDQTATNIADKDRKMTALH 285
++ L G TP+ AA + + +LE I+ A A D +ALH
Sbjct: 80 NRATDLDARMHDGTTPLILAA---RLAVEGMLEDLINSHADVNAVDDLGKSALH 130
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 175 GKTPLYMAAESESSDMVLT---LLENCTSLSHEGP--------NGKTALHAAVMYFDFKG 223
G T L + A +E D V + L+E + ++G G+TALH A +
Sbjct: 235 GXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXP- 293
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTA 283
++ L G K S D+ G TPI AA G+ + L I Q A+ A TA
Sbjct: 294 ---IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL-IQQGASVEAVDATDHTA 349
Query: 284 LHLAAGRGHARTVETILSLAPE 305
LA H V+ PE
Sbjct: 350 RQLAQANNHHNIVDIFDRCRPE 371
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIV---RVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHD 147
+++ G T L + A D V ++L+++ AK+ DG AAR+ K TALH
Sbjct: 230 ELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDG--AARKDSEKY--KGRTALHY 285
Query: 148 AMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN 207
A N +VK L E ++ GKTP+ +AA+ ++V L++ S+
Sbjct: 286 AAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDAT 345
Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGR 234
TA A +HH + +F R
Sbjct: 346 DHTARQLAQA-----NNHHNIVDIFDR 367
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
+P+H AA GH +R LI + + ++ + LH+A G++ VK
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQG-----------WAVNIITADHVSPLHEACLGGHLSCVK 109
Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
IL + D+ TPL+ A S S D V LL++ S+ E
Sbjct: 110 ILLKHGAQVNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
V A TPL A G D V +L+ Q + A + +H+A G
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA------------SPIHEAARRG 168
Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
++E V L + + + G TPLY+A E++ V LLE+ ++ +G + L
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 226
Query: 213 HA---------AVMYFDFKGDHHA 227
HA A + DF D A
Sbjct: 227 HAVVRTASEELACLLMDFGADTQA 250
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 247 WTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
W+P+H AA HG L A NI D ++ LH A GH V+ +L
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHLSCVKILL 112
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
N +G+TPL VA+K+G S+IV+ L++ D +AR + + TA A G
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELG-----ADISARDLTGL------TAEASARIFGR 179
Query: 154 MEVVKILT 161
EV+KI T
Sbjct: 180 QEVIKIFT 187
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
+ Y +TPL +A + + L+EN L + G TAL AV K + + +
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV-----KNNRLGIAEK 86
Query: 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKD-RKMTALHLAAGR 290
K S + D G TP+ ++ G ++ L + N+ D++ T L +A+
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL--EHGANVNDRNLEGETPLIVASKY 144
Query: 291 GHARTVETILSLAPE 305
G + V+ +L L +
Sbjct: 145 GRSEIVKKLLELGAD 159
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 21/141 (14%)
Query: 99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGD-EAARQMIRMVNNKKNTALHDAMFPGNMEVV 157
TPL VA G + + L++ +D D E + +I V N + + G+
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 158 KILTREDP-----DYPYSANDY---------------GKTPLYMAAESESSDMVLTLLEN 197
K + + P + YS Y G+TPL +A++ S++V LLE
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 198 CTSLSHEGPNGKTALHAAVMY 218
+S G TA +A ++
Sbjct: 157 GADISARDLTGLTAEASARIF 177
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
Q + G+T LH+AA++ SD + L++ + A + +N T LH A+
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADAX-----------IQDNMGRTPLHAAVSA 65
Query: 152 GNMEVVKILTREDP-DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210
V +IL R D +D G TPL +AA M+ L+ + ++ GK+
Sbjct: 66 DAQGVFQILLRNRATDLDARMHD-GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKS 124
Query: 211 ALH 213
ALH
Sbjct: 125 ALH 127
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G+T L++AA SD LLE + G+T LHAAV D + Q+ R
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV-----SADAQGVFQILLR 76
Query: 235 KKSL-LKVTDQYGWTPIHYAA 254
++ L G TP+ AA
Sbjct: 77 NRATDLDARMHDGTTPLILAA 97
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
Q + G+T LH+AA++ SD + L++ + A + +N T LH A+
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADAN-----------IQDNMGRTPLHAAVSA 100
Query: 152 GNMEVVKILTREDP-DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210
V +IL R D +D G TPL +AA M+ L+ + ++ GK+
Sbjct: 101 DAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159
Query: 211 ALH 213
ALH
Sbjct: 160 ALH 162
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G+T L++AA SD LLE + + G+T LHAAV D + Q+ R
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-----SADAQGVFQILIR 111
Query: 235 KKSL-LKVTDQYGWTPIHYAAYHGKYWINDLLE--IDQTATNIADKDRKMTALH 285
++ L G TP+ AA + + +LE I+ A A D +ALH
Sbjct: 112 NRATDLDARMHDGTTPLILAA---RLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
Q + G+T LH+AA++ SD + L++ + A + +N T LH A+
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADAN-----------IQDNMGRTPLHAAVSA 101
Query: 152 GNMEVVKILTREDP-DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210
V +IL R D +D G TPL +AA M+ L+ + ++ GK+
Sbjct: 102 DAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 160
Query: 211 ALH 213
ALH
Sbjct: 161 ALH 163
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G+T L++AA SD LLE + + G+T LHAAV D + Q+ R
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-----SADAQGVFQILIR 112
Query: 235 KKSL-LKVTDQYGWTPIHYAAYHGKYWINDLLE--IDQTATNIADKDRKMTALH 285
++ L G TP+ AA + + +LE I+ A A D +ALH
Sbjct: 113 NRATDLDARMHDGTTPLILAA---RLAVEGMLEDLINSHADVNAVDDLGKSALH 163
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 57/245 (23%)
Query: 74 ASTKFVEEILEICP--ALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAAR 131
S+ EE+L + A + N G T LH A + D+V+ L++
Sbjct: 48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA---------- 97
Query: 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYM---------- 181
I +N+ LH A G +++ + L + + + N G TPL +
Sbjct: 98 -NINQPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 182 ------------AAESESSDMVLTLLENCTSLSH-----EGPNGKTALHAAVMYFDFKGD 224
AA E ++L + H +G TALH A KG
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA----KGY 211
Query: 225 HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL-----------EIDQTATN 273
++ L + + + + D GWTP+H AA+ GK +L ++ QTA +
Sbjct: 212 TEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270
Query: 274 IADKD 278
+AD+D
Sbjct: 271 VADED 275
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 85/226 (37%), Gaps = 36/226 (15%)
Query: 182 AAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV 241
A S ++ VL LLE +++ +G TALH A + D+ M + + +
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACI-----DDNVDMVKFLVENGANINQ 101
Query: 242 TDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
D GW P+H AA G I + L I Q A A T L +A ++ ++
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYL-ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 302 L----------APECFELVDNRRW----------------NFLHYAVASFQLQDLKPLLR 335
E L D R+W LH A A + LK L++
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
Query: 336 NPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVN 381
AR +N D G TPLH A E R + + +AVN
Sbjct: 221 ---ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVN 262
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 15/101 (14%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
VNAK G TPL++A GH +IV VL+ ++G + + V+ T LH A
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLL------KNGAD-----VNAVDAIGFTPLHLAA 88
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
F G++E+ ++L + D + + +GKT ++ + + D+
Sbjct: 89 FIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDL 128
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
+D GK L AA + D V L+ N ++ + G T L+ A + H + +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-----GHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
+ + + + D G+TP+H AA+ G I ++L N DK K TA ++ G
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDISIGN 123
Query: 291 GHARTVETILSL 302
G+ E + L
Sbjct: 124 GNEDLAEILQKL 135
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 127 DEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
DE R + N +T LH A+ + E+V++L D G+TPL++A E++
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 187 SSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217
++ ++ LL+ + G+T L +A++
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSALL 234
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 71/207 (34%), Gaps = 36/207 (17%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
N G T LH+AA G + V L AA + + +TALH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLY-----------AAGAGVLVAERGGHTALHLACRVRA 90
Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
+L + P +P A SD LT ++CT + P
Sbjct: 91 HTCACVLLQPRPSHPRDA----------------SDTYLTQSQDCTPDTSHAP------- 127
Query: 214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATN 273
AAV + R R + L+ + G TP+H A H + LL N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQ--LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 274 IADKDRKMTALHLAAGRGHARTVETIL 300
+ T LHLA A +E +L
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLL 212
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 127 DEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
DE R + N +T LH A+ + E+V++L D G+TPL++A E++
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 187 SSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217
++ ++ LL+ + G+T L +A++
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSALL 234
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 71/207 (34%), Gaps = 36/207 (17%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
N G T LH+AA G + V L AA + + +TALH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLY-----------AAGAGVLVAERGGHTALHLACRVRA 90
Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
+L + P +P A SD LT ++CT + P
Sbjct: 91 HTCACVLLQPRPSHPRDA----------------SDTYLTQSQDCTPDTSHAP------- 127
Query: 214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATN 273
AAV + R R + L+ + G TP+H A H + LL N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQ--LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 274 IADKDRKMTALHLAAGRGHARTVETIL 300
+ T LHLA A +E +L
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLL 212
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
Query: 43 DMAREVIESLL--TLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTP 100
D R +IE+ + T+Q R +++ C+ + K++ + E+ G P
Sbjct: 34 DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV------HSLWHGQKP 87
Query: 101 LHVAAKFGHSDIVRVLIDRAK--------LAQDGDEAARQMI--RMVNNKKNTALH--DA 148
+H+A +D+V L++ AK L + DE I + + K TALH
Sbjct: 88 IHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG 147
Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE---SESSDMVLTLLENCTSLSHEG 205
+ P +E +KIL + P + + +TPL A E E+ D+ + + +SL +
Sbjct: 148 LGPEYLEXIKILVQLGAS-PTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDY 206
Query: 206 PN--GKTALHAAVM 217
N G + LH A++
Sbjct: 207 ANKQGNSHLHWAIL 220
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 101 LHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK-KNTALHDAMFPGNMEVVKI 159
+HVAA+ G +D VR LI+ + + N+ TALH A G ++ K
Sbjct: 24 IHVAARKGQTDEVRRLIETG------------VSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 160 LTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
L + +G+ P+++A + +D+V+ L+E
Sbjct: 72 LASVGEVHSLW---HGQKPIHLAVXANKTDLVVALVEG 106
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
+ +G TPL A+ FG + VR L++ ++ ++ +AL A G
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPH-----------ILAKERESALSLASTGGY 81
Query: 154 MEVVKILTREDPDYP-YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
++V +L D D Y N G TPL A V LL L+ E +G T +
Sbjct: 82 TDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139
Query: 213 HAAV 216
AV
Sbjct: 140 DLAV 143
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
+ +G TPL A+ FG + VR L++ ++ ++ +AL A G
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPH-----------ILAKERESALSLASTGGY 81
Query: 154 MEVVKILTREDPDYP-YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
++V +L D D Y N G TPL A V LL L+ E +G T +
Sbjct: 82 TDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPM 139
Query: 213 HAAV 216
AV
Sbjct: 140 DLAV 143
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLE 266
G+TAL VM G+ R+L R + + D+ G+ IH AA G+ + LLE
Sbjct: 38 GRTALQ--VMKL---GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGQLDTLQTLLE 91
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
Q NI D + + LHLAA GH R VE ++
Sbjct: 92 F-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 79 VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
++ +LE + I+ N +G+ PLH+AAK GH +V L+ + N
Sbjct: 86 LQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTA----------SNVGHRN 134
Query: 139 NKKNTALHDAMFPGNMEVVKIL 160
+K +TA A G EVV ++
Sbjct: 135 HKGDTACDLARLYGRNEVVSLM 156
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G D VR+L +A D AA+ + +T LH A G++EVVK+L
Sbjct: 31 AARAGQDDEVRIL-----MANGADVAAK------DKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
D + + +GKT ++ ++ + D+ L
Sbjct: 80 GADVX-AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLID 118
+ G TPLH+AA+ GH ++V++L++
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLE 78
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + G TPL++AA + ++V LLE + +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 205 GPNGKTALHAAV 216
GKTA ++
Sbjct: 87 DKFGKTAFDISI 98
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVV 157
D PLH AAK G+ +R +D R + ++ +TAL+ A G+ ++V
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDN-----------RVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 158 KILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
+ L + N G T L+ AA +D+V LL
Sbjct: 123 EXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRA 120
L Q N GDT LH AA G++DIV++L+ +
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
++ G T L+ A GH DIV L + + + N +TALH A + G
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLFTQPNIE----------LNQQNKLGDTALHAAAWKG 151
Query: 153 NMEVVKIL 160
++V++L
Sbjct: 152 YADIVQLL 159
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 108 GHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDY 167
G +D + +L+D A+ + E R V + TALH A+ V++L + D
Sbjct: 60 GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119
Query: 168 PYSAND-------------YGKTPLYMAAESESSDMVLTLLENC---TSLSHEGPNGKTA 211
A +G+ PL +AA + +V L EN L + G T
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV 179
Query: 212 LHAAVMYFD 220
LHA V D
Sbjct: 180 LHALVAIAD 188
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 59 NTILHINIMCQDAENASTKFVEEILEI----CPALLIQVNAK------GDTPLHVAAKFG 108
NT+LH + D +TKFV ++ ++ C L N + G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
Query: 109 HSDIVRVLIDR 119
I + +I R
Sbjct: 237 KIGIFQHIIRR 247
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSAND------------YGKTPLYMAAESES 187
+ ++ALH A+ +++ VK+L + A +G+ PL +AA ++
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 188 SDMVLTLLEN---CTSLSHEGPNGKTALHAAVMYFDFKGDHHAM 228
D+V LLEN SL G T LHA V D ++ A+
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIAL 197
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 59 NTILHINIMCQD--AENAS--TKFVEEILE----ICPALLIQ--VNAKGDTPLHVAAKFG 108
NT+LH + D AEN + T + +L+ +CP + ++ N + TPL +AAK G
Sbjct: 178 NTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEG 237
Query: 109 HSDIVRVLIDR 119
+I R ++ R
Sbjct: 238 KIEIFRHILQR 248
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLE 266
G+TAL VM G+ R+L R + + D+ G+ IH AA G + LLE
Sbjct: 38 GRTALQ--VMKL---GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
+Q NI D + + LHLAA GH R VE ++
Sbjct: 92 -NQADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
+G+ PLH+AAK GH +V L+ + N+K +TA A G E
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTA----------SNVGHRNHKGDTACDLARLYGRNE 151
Query: 156 VVKIL 160
VV ++
Sbjct: 152 VVSLM 156
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G D VR+L +A D AA+ + +T LH A G++EVVK+L
Sbjct: 13 AARAGQDDEVRIL-----MANGADVAAK------DKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
D + + +GKT ++ ++ + D+ L
Sbjct: 62 GADV-NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 97 GDTPLHVAAKFGHSDIVRVLID 118
G TPLH+AA+ GH ++V++L++
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
L +A G + V+IL D + + G TPL++AA + ++V LLE ++ +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 205 GPNGKTALHAAV 216
GKTA ++
Sbjct: 69 DKFGKTAFDISI 80
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 100 PLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKI 159
PLH AA + IV++L L D++ ++K NTAL+ A+ GN + VK+
Sbjct: 65 PLHQAATLEDTKIVKIL-----LFSGLDDS------QFDDKGNTALYYAVDSGNXQTVKL 113
Query: 160 LTREDPDYPYSANDYGKTPLYMAA 183
+++ + KT Y A
Sbjct: 114 FVKKNWRLXFYGKTGWKTSFYHAV 137
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLI 117
VNAK G TPLH+AA+ GH +IV VL+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLE 266
G+TAL VM G+ R+L R + + D+ G+ IH AA G + LLE
Sbjct: 38 GRTALQ--VMKL---GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
Q NI D + + LHLAA GH R VE ++
Sbjct: 92 F-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 79 VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
++ +LE + I+ N +G+ PLH+AAK GH +V L+ + N
Sbjct: 86 LQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTA----------SNVGHRN 134
Query: 139 NKKNTALHDAMFPGNMEVVKIL 160
+K +TA A G EVV ++
Sbjct: 135 HKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLE 266
G+TAL VM G+ R+L R + + D+ G+ IH AA G + LLE
Sbjct: 38 GRTALQ--VMKL---GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
Q NI D + + LHLAA GH R VE ++
Sbjct: 92 F-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 79 VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
++ +LE + I+ N +G+ PLH+AAK GH +V L+ + N
Sbjct: 86 LQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTA----------SNVGHRN 134
Query: 139 NKKNTALHDAMFPGNMEVVKIL 160
+K +TA A G EVV ++
Sbjct: 135 HKGDTACDLARLYGRNEVVSLM 156
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
N++ TALH+A+ G+ E+VK L + + + +D G TPL+ AA + + L+E+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
N++ TALH+A+ G+ E+VK L + + + +D G TPL+ AA + + L+E+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFLVES 125
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 27/181 (14%)
Query: 108 GHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDY 167
G +D + VL+D A+ + E R + + TALH A+ V++L + D
Sbjct: 58 GRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADV 117
Query: 168 PYSAND-------------YGKTPLYMAAESESSDMVLTLLENC---TSLSHEGPNGKTA 211
A +G+ PL +AA + +V L EN + + G T
Sbjct: 118 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTV 177
Query: 212 LHAAVMYFDFKGDH----HAMRQLFGRK-------KSLLKVTDQYGWTPIHYAAYHGKYW 260
LHA V D ++ M L K +L V + G +P+ AA GK
Sbjct: 178 LHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTGKIG 237
Query: 261 I 261
I
Sbjct: 238 I 238
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 59 NTILHINIMCQDAENASTKFVEEILEI----CPALLIQ------VNAKGDTPLHVAAKFG 108
NT+LH + D +TKFV ++ ++ C L +N G +PL +AAK G
Sbjct: 175 NTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTG 234
Query: 109 HSDIVRVLIDR 119
I + +I R
Sbjct: 235 KIGIFQHIIRR 245
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 74 ASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM 133
ST E+L+ + +Q + G +P+H AA+ G D ++VL++
Sbjct: 46 GSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGA-----------D 93
Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV 191
+ + + +H A+ G+ VV L E + A G TPL +A + + D+V
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLV 149
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
G T L++AA SD LLE + + G+T LHAAV D + Q+ R
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-----SADAQGVFQILIR 111
Query: 235 KKSL-LKVTDQYGWTPIHYAAYHGKYWINDLLE--IDQTATNIADKDRKMTALH 285
++ L G TP+ AA + + +LE I+ A A D +ALH
Sbjct: 112 NRATDLDARMHDGTTPLILAA---RLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 55 LQTRNTILHINIMCQDAENASTKFVEEILEI-CPALLIQV----------NAKGDTPLHV 103
+Q +LH ++ DA N K +++ PA+ +++ +A G +P+H
Sbjct: 23 VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHD 82
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G D ++VL++ + +++ + +H A+ G+ VV L E
Sbjct: 83 AARTGFLDTLKVLVEHGA-----------DVNALDSTGSLPIHLAIREGHSSVVSFLAPE 131
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMV 191
+ A+ G TPL +A + + +++
Sbjct: 132 SDLHHRDAS--GLTPLELARQRGAQNLM 157
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 26/149 (17%)
Query: 55 LQTRNTILHINIMCQDAEN------------ASTKFVEEILEICPALLIQVNAKGDTPLH 102
+Q +LH ++ DA N ST E+L+ + +Q + G +P+H
Sbjct: 21 VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ-DTSGTSPVH 79
Query: 103 VAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTR 162
AA+ G D ++VL++ + + + +H A+ G+ VV L
Sbjct: 80 DAARTGFLDTLKVLVEHGA-----------DVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 163 EDPDYPYSANDYGKTPLYMAAESESSDMV 191
E + A G TPL +A + + D+V
Sbjct: 129 ESDLHRRDAR--GLTPLELALQRGAQDLV 155
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 55 LQTRNTILHINIMCQDAENASTKFVEEILEI-CPALLIQV----------NAKGDTPLHV 103
+Q +LH ++ DA N K +++ PA+ +++ +A G +P+H
Sbjct: 21 VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHD 80
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
AA+ G D ++VL++ + +++ + +H A+ G+ VV L E
Sbjct: 81 AARTGFLDTLKVLVEHGA-----------DVNALDSTGSLPIHLAIREGHSSVVSFLAPE 129
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMV 191
+ A+ G TPL +A + + +++
Sbjct: 130 SDLHHRDAS--GLTPLELARQRGAQNLM 155
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 139 NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC 198
K +TALH N E +K+L R AN+ G+TPL +A + E+C
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKH--------EHC 253
Query: 199 TSLSHEGPNGKTALHAAVMY 218
L + +G+ H V Y
Sbjct: 254 EELLTQALSGRFNSHVHVEY 273
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
+ V+ TAL G+ + V++L D + G T L+MAA ++V
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV 241
L+E + E G TAL A + M+ FGR+ L KV
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQ--FGRRIGLEKV 174
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 222 KGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKM 281
K D A+ QL + + D+ G T + + A G LL + D +
Sbjct: 54 KADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 111
Query: 282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA 321
TALH+AAG VE ++ L + E+ D R L A
Sbjct: 112 TALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA 150
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 56 QTRNTILHINIMCQDAENAS-TKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVR 114
+T N ++H DA A ++ +LE + I+ N +G+ PLH+AAK GH +V
Sbjct: 68 RTGNAVIH------DAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVE 120
Query: 115 VLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL 160
L+ + N+K +TA A G EVV ++
Sbjct: 121 FLVKHTA----------SNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLE 266
G+TAL VM G+ R+L R + + D+ G IH AA G + LLE
Sbjct: 38 GRTALQ--VMKL---GNPEIARRLLLRGANP-DLKDRTGNAVIHDAARAGFLDTLQTLLE 91
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
Q NI D + + LHLAA GH R VE ++
Sbjct: 92 F-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
Length = 298
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 317 FLHYAVASFQLQDLKPLL-RNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHA 375
F+++ S Q LK + + RI G+ K +TPL A P EF +YM +
Sbjct: 208 FMYFLRGSLPWQGLKAATNKQKYERI----GEKKQSTPLRELCAGFPEEFYKYMHYARNL 263
Query: 376 NYQAVNDQNVSVGHIMK 392
+ A D + G K
Sbjct: 264 AFDATPDYDYLQGLFSK 280
>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
Length = 297
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 317 FLHYAVASFQLQDLKPLL-RNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHA 375
F+++ S Q LK + + RI G+ K +TPL A P EF +YM +
Sbjct: 207 FMYFLRGSLPWQGLKAATNKQKYERI----GEKKQSTPLRELCAGFPEEFYKYMHYARNL 262
Query: 376 NYQAVNDQNVSVGHIMK 392
+ A D + G K
Sbjct: 263 AFDATPDYDYLQGLFSK 279
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
+ V+ TAL G+ + V++L D + G T L+MAA ++V
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV 241
L+E + E G TAL A + M+ FGR+ L KV
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQ--FGRRIGLEKV 175
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305
G P+HYAA G+ I + L + N DK +T L A GH V+ +LS +
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 306 ----------CFELVDNR 313
FE DN+
Sbjct: 99 KTVKGPDGLTAFEATDNQ 116
>pdb|3CHH|A Chain A, Crystal Structure Of Di-Iron Aurf
pdb|3CHH|B Chain B, Crystal Structure Of Di-Iron Aurf
pdb|3CHI|A Chain A, Crystal Structure Of Di-Iron Aurf (Monoclinic Form)
pdb|3CHI|B Chain B, Crystal Structure Of Di-Iron Aurf (Monoclinic Form)
pdb|3CHT|A Chain A, Crystal Structure Of Di-Iron Aurf With Partially Bound
Ligand
pdb|3CHT|B Chain B, Crystal Structure Of Di-Iron Aurf With Partially Bound
Ligand
pdb|3CHU|A Chain A, Crystal Structure Of Di-iron Aurf
pdb|3CHU|B Chain B, Crystal Structure Of Di-iron Aurf
Length = 336
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLT 193
PDYP + + PL++AAE VLT
Sbjct: 59 PDYPLEIVPFAEHPLFLAAEPHQRQRVLT 87
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
G P+HYAA G+ I + L + N DK +T L A GH V+ +LS
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSCVKLLLS 89
>pdb|2JCD|A Chain A, Structure Of The N-oxygenase Aurf From Streptomyces
Thioluteus
pdb|2JCD|B Chain B, Structure Of The N-oxygenase Aurf From Streptomyces
Thioluteus
Length = 345
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLT 193
PDYP + + PL++AAE VLT
Sbjct: 68 PDYPLEIVPFAEHPLFLAAEPHQRQRVLT 96
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 206 PN--GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
PN G TALH A+ G ++++ + + D +GWTP+H AA
Sbjct: 50 PNEEGITALHNAIC-----GANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,309,643
Number of Sequences: 62578
Number of extensions: 485903
Number of successful extensions: 2044
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 441
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)