Query 014436
Match_columns 424
No_of_seqs 280 out of 3185
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 11:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 6.8E-60 2.3E-64 441.8 29.7 361 23-402 12-394 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 5.5E-60 1.9E-64 442.4 27.6 332 23-371 45-398 (437)
3 3utm_A Tankyrase-1; tankyrase, 100.0 3.8E-47 1.3E-51 345.3 21.9 310 43-392 9-321 (351)
4 4g8k_A 2-5A-dependent ribonucl 100.0 1.7E-46 6E-51 338.6 23.4 312 6-379 6-329 (337)
5 4g8k_A 2-5A-dependent ribonucl 100.0 6.4E-46 2.2E-50 334.9 25.5 283 96-405 24-321 (337)
6 1wdy_A 2-5A-dependent ribonucl 100.0 6.5E-45 2.2E-49 320.7 24.6 265 96-382 4-284 (285)
7 3utm_A Tankyrase-1; tankyrase, 100.0 2.3E-44 7.7E-49 327.0 19.3 324 23-394 22-349 (351)
8 1wdy_A 2-5A-dependent ribonucl 100.0 3.1E-43 1.1E-47 310.0 23.8 263 58-347 5-283 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 1.7E-44 5.7E-49 329.4 15.5 315 24-376 36-371 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 8.6E-43 2.9E-47 306.2 16.7 252 94-392 12-263 (285)
11 2fo1_E LIN-12 protein; beta-ba 100.0 5.8E-43 2E-47 319.2 14.5 299 5-336 46-368 (373)
12 3d9h_A CDNA FLJ77766, highly s 100.0 7.3E-41 2.5E-45 293.9 22.5 220 139-405 13-242 (285)
13 2xai_A ASB-9, ankyrin repeat a 100.0 1.4E-40 4.9E-45 288.5 23.4 246 140-401 2-254 (261)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 6.7E-41 2.3E-45 289.3 20.9 230 134-372 3-245 (253)
15 2xai_A ASB-9, ankyrin repeat a 100.0 3.5E-41 1.2E-45 292.4 18.4 253 96-371 2-259 (261)
16 1oy3_D Transcription factor in 100.0 5.5E-41 1.9E-45 295.1 16.6 250 135-394 3-268 (282)
17 3ljn_A Hypothetical protein; a 100.0 1E-41 3.5E-46 310.8 12.3 265 93-382 16-320 (364)
18 1oy3_D Transcription factor in 100.0 2.7E-40 9.3E-45 290.7 17.8 255 91-362 3-270 (282)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 1.3E-39 4.5E-44 281.2 20.3 230 90-337 3-246 (253)
20 1k1a_A B-cell lymphoma 3-encod 100.0 1.7E-39 5.7E-44 278.9 20.4 223 134-401 2-232 (241)
21 3ljn_A Hypothetical protein; a 100.0 7.3E-40 2.5E-44 298.5 19.0 255 134-402 13-306 (364)
22 3b7b_A Euchromatic histone-lys 100.0 9.6E-39 3.3E-43 273.3 21.0 223 135-402 5-227 (237)
23 1s70_B 130 kDa myosin-binding 100.0 1.9E-39 6.5E-44 287.8 14.7 264 68-393 6-274 (299)
24 3b7b_A Euchromatic histone-lys 100.0 3.3E-38 1.1E-42 270.0 21.6 227 90-371 4-231 (237)
25 3aji_A 26S proteasome non-ATPa 100.0 2.7E-38 9.4E-43 269.4 19.8 222 139-370 4-225 (231)
26 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-38 4.1E-43 273.5 16.4 228 55-336 6-238 (241)
27 3aji_A 26S proteasome non-ATPa 100.0 1.6E-37 5.4E-42 264.7 20.9 225 94-336 3-227 (231)
28 4b93_B Ankyrin repeat domain-c 100.0 2E-38 6.7E-43 275.0 14.9 223 93-362 7-230 (269)
29 3eu9_A Huntingtin-interacting 100.0 3.3E-37 1.1E-41 264.3 21.6 228 92-336 4-232 (240)
30 3kea_A K1L; tropism, ANK repea 100.0 1.7E-37 5.8E-42 272.3 18.4 235 134-392 24-260 (285)
31 4b93_B Ankyrin repeat domain-c 100.0 4.1E-38 1.4E-42 273.0 13.4 218 136-398 6-231 (269)
32 2dzn_A Probable 26S proteasome 100.0 6.5E-37 2.2E-41 260.4 19.8 212 141-393 2-217 (228)
33 2f8y_A Notch homolog 1, transl 100.0 7.6E-37 2.6E-41 259.0 18.6 216 152-377 2-217 (223)
34 2dzn_A Probable 26S proteasome 100.0 1.1E-36 3.6E-41 259.1 18.9 191 136-371 31-226 (228)
35 3eu9_A Huntingtin-interacting 100.0 9.1E-36 3.1E-40 255.3 20.9 228 137-376 5-235 (240)
36 3kea_A K1L; tropism, ANK repea 100.0 1.5E-36 5E-41 266.4 15.8 230 89-350 23-254 (285)
37 1sw6_A Regulatory protein SWI6 100.0 1.5E-37 5.3E-42 278.0 7.1 291 57-393 22-325 (327)
38 2f8y_A Notch homolog 1, transl 100.0 3.5E-35 1.2E-39 248.8 18.2 194 94-304 22-215 (223)
39 1sw6_A Regulatory protein SWI6 100.0 1.6E-37 5.5E-42 277.9 3.8 258 95-405 21-303 (327)
40 1s70_B 130 kDa myosin-binding 100.0 9.3E-36 3.2E-40 264.0 11.9 222 23-266 38-285 (299)
41 1ikn_D Protein (I-kappa-B-alph 100.0 6.8E-36 2.3E-40 255.3 10.4 219 136-393 3-228 (236)
42 2rfa_A Transient receptor pote 100.0 5E-34 1.7E-38 243.1 14.4 202 25-237 3-222 (232)
43 4gpm_A Engineered protein OR26 100.0 1.3E-34 4.3E-39 232.0 9.3 159 27-203 6-164 (169)
44 1ikn_D Protein (I-kappa-B-alph 100.0 7.5E-35 2.6E-39 248.8 8.3 216 23-254 6-227 (236)
45 2rfa_A Transient receptor pote 100.0 6.2E-33 2.1E-37 236.3 19.6 211 140-382 2-228 (232)
46 2pnn_A Transient receptor pote 100.0 2.2E-33 7.4E-38 245.2 16.2 210 22-249 10-270 (273)
47 2etb_A Transient receptor pote 100.0 2.1E-33 7.3E-38 242.9 13.7 195 25-237 2-246 (256)
48 2pnn_A Transient receptor pote 100.0 2.7E-33 9.2E-38 244.6 13.9 228 51-317 6-270 (273)
49 3hra_A Ankyrin repeat family p 100.0 1.4E-31 4.8E-36 222.7 22.5 192 139-371 3-199 (201)
50 3hra_A Ankyrin repeat family p 100.0 7E-32 2.4E-36 224.5 20.4 197 94-336 2-200 (201)
51 2etb_A Transient receptor pote 100.0 5.6E-33 1.9E-37 240.3 13.8 204 57-267 1-242 (256)
52 4gpm_A Engineered protein OR26 100.0 9.7E-32 3.3E-36 215.2 14.7 155 61-237 7-161 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 2.1E-32 7.1E-37 237.3 11.1 196 24-237 4-250 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 2.9E-32 9.8E-37 236.4 11.2 207 56-269 3-248 (260)
55 4hbd_A KN motif and ankyrin re 100.0 4.6E-31 1.6E-35 230.2 11.0 195 56-270 74-274 (276)
56 2aja_A Ankyrin repeat family p 100.0 3E-33 1E-37 252.1 -3.3 283 59-402 66-366 (376)
57 2rfm_A Putative ankyrin repeat 100.0 5.7E-30 2E-34 211.2 15.9 161 53-235 30-190 (192)
58 3v30_A DNA-binding protein rfx 100.0 5E-31 1.7E-35 213.5 8.0 170 58-249 2-171 (172)
59 4hbd_A KN motif and ankyrin re 100.0 1.2E-29 4.1E-34 221.2 16.5 194 96-304 75-274 (276)
60 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.8E-31 2.3E-35 210.6 8.0 159 24-200 4-162 (162)
61 3v30_A DNA-binding protein rfx 100.0 9.1E-30 3.1E-34 206.1 14.2 167 27-211 4-171 (172)
62 2rfm_A Putative ankyrin repeat 100.0 2.8E-29 9.4E-34 207.1 16.7 163 89-268 27-189 (192)
63 3v31_A Ankyrin repeat family A 100.0 1.8E-29 6.3E-34 203.2 14.2 159 57-237 2-160 (167)
64 2aja_A Ankyrin repeat family p 100.0 3.2E-32 1.1E-36 245.4 -2.8 294 27-371 67-370 (376)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 4.9E-30 1.7E-34 206.8 9.5 156 57-234 13-168 (169)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 6.8E-29 2.3E-33 200.1 14.0 155 96-267 13-167 (169)
67 3v31_A Ankyrin repeat family A 100.0 3E-28 1E-32 196.1 16.9 157 96-269 2-158 (167)
68 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.8E-28 6E-33 196.4 15.2 157 96-269 4-160 (162)
69 2vge_A RELA-associated inhibit 100.0 3.9E-32 1.3E-36 229.7 -8.2 198 41-262 1-204 (229)
70 2vge_A RELA-associated inhibit 100.0 1.2E-30 3.9E-35 220.7 0.6 203 157-371 1-209 (229)
71 1awc_B Protein (GA binding pro 100.0 2.8E-28 9.4E-33 193.2 13.4 121 94-230 31-151 (153)
72 3f6q_A Integrin-linked protein 100.0 3.7E-28 1.3E-32 197.9 12.8 161 57-238 4-164 (179)
73 3twr_A Tankyrase-2; ankyrin re 100.0 1.2E-28 4.1E-33 198.0 9.6 159 55-235 5-163 (165)
74 1awc_B Protein (GA binding pro 100.0 1.3E-27 4.3E-32 189.4 14.9 151 97-265 2-152 (153)
75 3f6q_A Integrin-linked protein 100.0 4.8E-29 1.6E-33 203.1 6.6 167 24-208 4-171 (179)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8.8E-28 3E-32 191.0 12.2 150 98-266 3-153 (156)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.1E-27 2.4E-31 185.8 15.6 154 141-302 2-155 (156)
78 3twr_A Tankyrase-2; ankyrin re 99.9 2.5E-27 8.5E-32 190.3 12.1 160 93-269 4-163 (165)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9E-29 3.1E-33 211.1 3.1 163 24-204 4-168 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.6E-27 5.5E-32 203.4 4.9 212 138-398 2-231 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 2.9E-26 9.9E-31 177.5 11.1 133 87-236 2-135 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 9E-26 3.1E-30 179.2 10.7 146 90-253 5-151 (156)
83 3t8k_A Uncharacterized protein 99.9 3.1E-27 1.1E-31 192.3 1.7 159 27-204 8-183 (186)
84 1d9s_A Cyclin-dependent kinase 99.9 3.8E-26 1.3E-30 176.9 3.9 129 53-200 7-136 (136)
85 3t8k_A Uncharacterized protein 99.9 2.4E-25 8.1E-30 181.2 8.7 160 97-270 6-178 (186)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.9E-24 1.7E-28 162.7 14.2 125 96-236 1-125 (126)
87 1bi7_B P16INK4A, MTS1, multipl 99.9 3.8E-25 1.3E-29 175.5 8.2 145 240-391 6-151 (156)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 2.3E-24 7.9E-29 166.8 11.9 127 93-235 10-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.5E-24 8.5E-29 164.4 11.9 126 57-200 1-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 1.8E-24 6.1E-29 167.4 8.7 127 54-198 10-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.9E-24 6.4E-29 167.6 6.4 128 92-235 5-132 (137)
92 3deo_A Signal recognition part 99.9 5.6E-24 1.9E-28 173.6 9.3 141 93-267 40-180 (183)
93 3ui2_A Signal recognition part 99.9 1.1E-23 3.7E-28 180.0 9.1 141 57-218 14-154 (244)
94 3aaa_C Myotrophin, protein V-1 99.9 2.7E-23 9.2E-28 157.8 9.0 112 94-217 4-115 (123)
95 3c5r_A BARD-1, BRCA1-associate 99.9 2.6E-24 8.8E-29 166.8 2.4 133 48-199 1-133 (137)
96 3ehr_A Osteoclast-stimulating 99.9 5E-23 1.7E-27 173.6 8.9 133 90-238 66-199 (222)
97 3aaa_C Myotrophin, protein V-1 99.9 9.6E-23 3.3E-27 154.7 9.4 109 279-392 6-114 (123)
98 3deo_A Signal recognition part 99.9 3E-22 1E-26 163.3 12.2 141 137-302 40-181 (183)
99 3ui2_A Signal recognition part 99.9 4.2E-22 1.4E-26 170.1 13.0 170 97-305 15-185 (244)
100 2b0o_E UPLC1; arfgap, structur 99.9 2.3E-22 8E-27 176.6 11.1 145 97-258 151-298 (301)
101 2b0o_E UPLC1; arfgap, structur 99.9 1.5E-23 5.1E-28 184.2 2.4 139 56-218 149-296 (301)
102 3ehr_A Osteoclast-stimulating 99.9 7.2E-23 2.5E-27 172.6 3.4 138 53-208 68-206 (222)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.6E-21 1.2E-25 138.0 10.1 93 96-200 1-93 (93)
104 1dcq_A PYK2-associated protein 99.8 7.4E-21 2.5E-25 165.2 10.9 124 247-375 131-262 (278)
105 1dcq_A PYK2-associated protein 99.8 3.6E-20 1.2E-24 160.9 13.0 132 280-417 130-269 (278)
106 3jue_A Arfgap with coiled-coil 99.8 2.1E-20 7.2E-25 167.7 11.9 143 96-254 198-345 (368)
107 2l6b_A NR1C; ankyrin, consensu 99.8 4.1E-21 1.4E-25 143.8 5.5 108 92-211 4-111 (115)
108 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-20 3.7E-25 141.4 6.9 106 278-388 7-112 (115)
109 3lvq_E ARF-GAP with SH3 domain 99.8 6.3E-20 2.2E-24 173.1 12.9 141 98-255 133-276 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.4E-19 4.9E-24 129.6 11.8 92 140-236 1-92 (93)
111 3lvq_E ARF-GAP with SH3 domain 99.8 3E-20 1E-24 175.3 10.2 135 59-217 133-276 (497)
112 3jue_A Arfgap with coiled-coil 99.8 2.9E-20 9.8E-25 166.9 8.4 144 57-218 198-347 (368)
113 2zgd_A 3 repeat synthetic anky 99.7 3.4E-18 1.2E-22 126.4 7.8 93 90-194 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 4.7E-17 1.6E-21 120.3 10.0 93 134-231 17-109 (110)
115 1gp8_A Protein (scaffolding pr 70.7 1.4 4.8E-05 23.7 0.8 24 23-46 11-34 (40)
116 3mkq_B Coatomer subunit alpha; 50.3 52 0.0018 25.3 6.7 130 26-197 9-140 (177)
117 3mkq_B Coatomer subunit alpha; 41.4 59 0.002 25.1 5.7 104 24-163 36-140 (177)
118 3k49_A MRNA-binding protein PU 37.8 68 0.0023 28.2 6.5 54 28-83 45-101 (369)
119 3gvo_A Pumilio 2, pumilio homo 33.8 58 0.002 28.3 5.3 52 29-82 41-95 (351)
120 3gvo_A Pumilio 2, pumilio homo 26.1 26 0.00088 30.6 1.7 51 278-328 215-267 (351)
121 3k49_A MRNA-binding protein PU 21.4 43 0.0015 29.4 2.2 26 311-336 261-286 (369)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.8e-60 Score=441.80 Aligned_cols=361 Identities=24% Similarity=0.262 Sum_probs=265.7
Q ss_pred cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH 102 (424)
Q Consensus 23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 102 (424)
+.+.||||+||..|++++|++|++.|.+++..+..|.||||+| +..|+.+++++|++. +..++.++..|.||||
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~ 85 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLH 85 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHH
Confidence 4566778888888888888888877776666677777888888 778888888887776 5666777777778888
Q ss_pred HHHHcCcHHHHHHHHHhchhcccch----------------HHHHHH------HHHhcCCCCcHHHHHHhCCCHHHHHHH
Q 014436 103 VAAKFGHSDIVRVLIDRAKLAQDGD----------------EAARQM------IRMVNNKKNTALHDAMFPGNMEVVKIL 160 (424)
Q Consensus 103 ~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~~~~~------i~~~~~~g~t~L~~A~~~~~~~~v~~L 160 (424)
+|+..|+.++|++|+++|++++... +....+ .+..+..|.||||+|+..|+.+++++|
T Consensus 86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 8888888888888887777643110 000111 112345566777777777777777777
Q ss_pred hhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCccc
Q 014436 161 TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK 240 (424)
Q Consensus 161 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~ 240 (424)
++++++++ ..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.. ++
T Consensus 166 l~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~-~~ 239 (437)
T 1n11_A 166 LERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ----NQVEVARSLLQYGGS-AN 239 (437)
T ss_dssp HHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCC-TT
T ss_pred HhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CC
Confidence 77766654 5566677777777777777777777777777777777777777777776 777777777776665 46
Q ss_pred ccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 014436 241 VTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHY 320 (424)
Q Consensus 241 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 320 (424)
..+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|.++ +.++..|+||||+
T Consensus 240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 317 (437)
T 1n11_A 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHV 317 (437)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHH
Confidence 6777788888888888887777777776666555554 7788888888888888888888888876 7778888888888
Q ss_pred HHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhH
Q 014436 321 AVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLV 400 (424)
Q Consensus 321 A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~ 400 (424)
|+..++.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|+||+++|.+. ++..+
T Consensus 318 A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~l~~A~~~-g~~~~ 392 (437)
T 1n11_A 318 ASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRL-GYISV 392 (437)
T ss_dssp HHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHT-TCHHH
T ss_pred HHHcCcHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHc-CcHHH
Confidence 8888888888888887 88888888888888888888888888888887 7888888888888888888653 55544
Q ss_pred HH
Q 014436 401 IN 402 (424)
Q Consensus 401 ~~ 402 (424)
++
T Consensus 393 ~~ 394 (437)
T 1n11_A 393 TD 394 (437)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-60 Score=442.40 Aligned_cols=332 Identities=23% Similarity=0.267 Sum_probs=289.1
Q ss_pred cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH 102 (424)
Q Consensus 23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 102 (424)
..+.||||+||..|+.++|++|++.|.+.+..+..|.||||+| +..|+.+++++|++. +..++..+..|.||||
T Consensus 45 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~ 118 (437)
T 1n11_A 45 VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLEN----NANPNLATTAGHTPLH 118 (437)
T ss_dssp SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH--HHCCCHHHHHHHHhC----CCCCCCCCCCCCcHHH
Confidence 3556788888888888888888888887777777888888888 888888888888886 5666667777777777
Q ss_pred HHHHcCcHHHHHHHHHhchhcccch----------------HHHHHH------HHHhcCCCCcHHHHHHhCCCHHHHHHH
Q 014436 103 VAAKFGHSDIVRVLIDRAKLAQDGD----------------EAARQM------IRMVNNKKNTALHDAMFPGNMEVVKIL 160 (424)
Q Consensus 103 ~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~~~~~------i~~~~~~g~t~L~~A~~~~~~~~v~~L 160 (424)
+|+..|+.+++++|++++++..... ...+.+ ++..+..|.||||+|+..|+.+++++|
T Consensus 119 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 198 (437)
T 1n11_A 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 7777777777777777766543111 111111 245667899999999999999999999
Q ss_pred hhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCccc
Q 014436 161 TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK 240 (424)
Q Consensus 161 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~ 240 (424)
++++.+.. ..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.. ++
T Consensus 199 l~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~~~~-~~ 272 (437)
T 1n11_A 199 LPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE----GHAEMVALLLSKQAN-GN 272 (437)
T ss_dssp GGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHTTTCC-TT
T ss_pred HhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC----CCHHHHHHHHhcCCC-CC
Confidence 99999866 6778899999999999999999999999999999999999999999999 999999999998877 58
Q ss_pred ccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 014436 241 VTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHY 320 (424)
Q Consensus 241 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 320 (424)
..+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|+++ +.++..|+||||+
T Consensus 273 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~ 350 (437)
T 1n11_A 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQ 350 (437)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHH
Confidence 8899999999999999999999999888877776665 8999999999999999999999999997 8899999999999
Q ss_pred HHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436 321 AVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR 371 (424)
Q Consensus 321 A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~ 371 (424)
|+..++.+++++|++. |++++.+|..|+|||++|.+.|+.+++++|..
T Consensus 351 A~~~g~~~iv~~Ll~~---ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 351 AAQQGHTDIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398 (437)
T ss_dssp HHHTTCHHHHHHHHHT---TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCChHHHHHHHHHC---cCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 9999999999999998 99999999999999999999999999987754
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.8e-47 Score=345.34 Aligned_cols=310 Identities=18% Similarity=0.143 Sum_probs=272.0
Q ss_pred HHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchh
Q 014436 43 DMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL 122 (424)
Q Consensus 43 ~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 122 (424)
.+.+.+.+....+..+.++||.| ++.|+.+.++.++.. .+..++..|..|.||||+|+..|+.++|++|+++|++
T Consensus 9 ~l~~~~~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 83 (351)
T 3utm_A 9 DLADPSAKAVLTGEYKKDELLEA--ARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83 (351)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hccCCceeeeeeccccchhHHHH--HHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45556666667778899999999 999999999888764 5677788899999999999999999999999999998
Q ss_pred cccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCC
Q 014436 123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS 202 (424)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 202 (424)
++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 84 -----------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 151 (351)
T 3utm_A 84 -----------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151 (351)
T ss_dssp -----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred -----------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 66788999999999999999999999999999976 778889999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCch
Q 014436 203 HEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMT 282 (424)
Q Consensus 203 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t 282 (424)
..+..|.+++++++.. +..+.+.+... ..++..++..+.......+......... ....|.|
T Consensus 152 ~~~~~g~~~l~~a~~~----~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t 213 (351)
T 3utm_A 152 LVNCHGKSAVDMAPTP----ELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINFK-QPQSHET 213 (351)
T ss_dssp CCCTTSCCHHHHCSSH----HHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTCC-CTTTCCC
T ss_pred cccCCCCcchHHHhhh----hhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhccccc-CCCCCCC
Confidence 9999999999999876 66666666553 2467778888877755555444443333 3348899
Q ss_pred HHHHHHhc---CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHh
Q 014436 283 ALHLAAGR---GHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359 (424)
Q Consensus 283 ~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~ 359 (424)
|||.|+.. ++.+++++|++.|.++ +.++..|+||||+|+..++.+++++|++. |++++.+|..|+||||+|+.
T Consensus 214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~ 289 (351)
T 3utm_A 214 ALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALHRAAL 289 (351)
T ss_dssp HHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHH
Confidence 99999999 6689999999999996 88999999999999999999999999998 99999999999999999999
Q ss_pred cCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436 360 VRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK 392 (424)
Q Consensus 360 ~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~ 392 (424)
.++.+++++|++ +|++++.+|..|+||+++|.
T Consensus 290 ~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 290 AGHLQTCRLLLS-YGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHSC
T ss_pred cCcHHHHHHHHH-cCCCCCCcCCCCCChhhhhh
Confidence 999999999998 79999999999999999984
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.7e-46 Score=338.63 Aligned_cols=312 Identities=18% Similarity=0.150 Sum_probs=205.1
Q ss_pred eeeccccCCCCcccccccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhcc-ccCCcchhhhhhhHHhhhccHHHHHHHHH
Q 014436 6 SIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTL-QTRNTILHINIMCQDAENASTKFVEEILE 84 (424)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~l~~~~~ 84 (424)
..+|++.|.-.........+.++|+.||..|++++|++|++.|++++..+ ..|.||||+| +..|+.+++++|++.
T Consensus 6 ~~~p~~~p~~s~~~~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~~-- 81 (337)
T 4g8k_A 6 HNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH-- 81 (337)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT--
T ss_pred CCCCCCCCCCccCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHHc--
Confidence 34455555444444444456778888888888888888888888776554 3578888888 888888888888875
Q ss_pred hCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 014436 85 ICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRED 164 (424)
Q Consensus 85 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 164 (424)
++.++..+..+.+|++.++..+...++..+++.+.+ ++..|..|.||||+|+..|+.+++++|+++|
T Consensus 82 --ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g 148 (337)
T 4g8k_A 82 --GADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD-----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148 (337)
T ss_dssp --TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred --CCchhhhccCCCchhHHHHhcccchhhHHhhhccch-----------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 677777888888888888888888888888888877 5567778888888888888888888888887
Q ss_pred CCCCCC---------CCCCCCcHHHHHHhcCChHHHHHHHH-hCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhh
Q 014436 165 PDYPYS---------ANDYGKTPLYMAAESESSDMVLTLLE-NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234 (424)
Q Consensus 165 ~~~~~~---------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~ 234 (424)
++++.. .+..|.||||+|+..|+.++|++|++ .|++++.++..|.|+++.++..........++++|++.
T Consensus 149 a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ 228 (337)
T 4g8k_A 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 228 (337)
T ss_dssp CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT
T ss_pred CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC
Confidence 765422 23457788888888888888888875 47788888888888877776553222333455555555
Q ss_pred cCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhh-CCCccccccCC
Q 014436 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL-APECFELVDNR 313 (424)
Q Consensus 235 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~ 313 (424)
+.. ++.++. .|.||||+|+..++.+++++|++. +.+ ++.+|..
T Consensus 229 gad-~n~~d~----------------------------------~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~ 272 (337)
T 4g8k_A 229 GAD-VNVRGE----------------------------------RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSD 272 (337)
T ss_dssp TCC-TTCCCG----------------------------------GGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTT
T ss_pred CCC-CCCcCC----------------------------------CCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCC
Confidence 544 344444 445555555555555566655554 333 3556666
Q ss_pred CCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhh
Q 014436 314 RWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQA 379 (424)
Q Consensus 314 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~ 379 (424)
|+||||+|++.|+.+++++|++. |+++|.+| |||+|++.++.+++++||+ +||++|.
T Consensus 273 G~TpL~~A~~~g~~~iv~~Ll~~---GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~-~GA~~d~ 329 (337)
T 4g8k_A 273 GKTALLLAVELKLKKIAELLCKR---GASTDCGD-----LVMTARRNYDHSLVKVLLS-HGAKEDF 329 (337)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHTT---SCSSTTCC-----HHHHHHHTTCHHHHHHHHH-TTCCC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCC-----HHHHHHHcCCHHHHHHHHH-CcCCCCC
Confidence 66666666666666666666665 56666554 6666666666666666665 5666654
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.4e-46 Score=334.93 Aligned_cols=283 Identities=20% Similarity=0.219 Sum_probs=198.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC-CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN-KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY 174 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 174 (424)
.|.||||.|+++|+.++|++|+++|++ ++.++. .|.||||+|+..|+.++|++|+++|+++. ..+..
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gad-----------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~ 91 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGAN-----------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKN 91 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCC-----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCC-----------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhccC
Confidence 345666666666666666666666655 333333 35666666666666666666666666644 45555
Q ss_pred CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc---------ccccCCC
Q 014436 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL---------LKVTDQY 245 (424)
Q Consensus 175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~---------~~~~~~~ 245 (424)
+.++++.++..+...++..+++.+++++..|..|.||+|+|+.. ++.+++++++..+... ....+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~----~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~ 167 (337)
T 4g8k_A 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY----GKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167 (337)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT----TCHHHHHHHHHTTCCTTCCCCCC-----CTTC
T ss_pred CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc----CcHHHHHHHHHcCCCcchhhccccccccccCC
Confidence 66666666666666666666666666666666666666666665 6666666666555432 1233455
Q ss_pred CChHHHHHHhcCChhHHHHHhh-ccccccccccCCCchHHHHHHhcCC----HHHHHHHHhhCCCccccccCCCCcHHHH
Q 014436 246 GWTPIHYAAYHGKYWINDLLEI-DQTATNIADKDRKMTALHLAAGRGH----ARTVETILSLAPECFELVDNRRWNFLHY 320 (424)
Q Consensus 246 ~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~t~l~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 320 (424)
|.||||+|+..|+.+++++|.. .+...+..+. .|.|+++.++..+. ..++++|++.|+++ +.++..|+||||+
T Consensus 168 g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~ 245 (337)
T 4g8k_A 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLIL 245 (337)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHH
Confidence 7777777777777776666653 3444444444 67777776654432 46889999999997 8899999999999
Q ss_pred HHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhH
Q 014436 321 AVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLV 400 (424)
Q Consensus 321 A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~ 400 (424)
|+..++.++++.|++.. +++++.+|..|+||||+|++.|+.+++++||+ +|++++.+ +||++|+.. ++..+
T Consensus 246 a~~~~~~~~v~~Ll~~~--~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~-~~~~i 316 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRN-YDHSL 316 (337)
T ss_dssp HHHTTCHHHHHHHHTST--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHT-TCHHH
T ss_pred HHHhhhhHHHHHHHHhc--CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHc-CCHHH
Confidence 99999999999999864 88999999999999999999999999999998 89998754 599999864 77778
Q ss_pred HHHHH
Q 014436 401 INLSI 405 (424)
Q Consensus 401 ~~~~~ 405 (424)
+++.+
T Consensus 317 v~~Ll 321 (337)
T 4g8k_A 317 VKVLL 321 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77443
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.5e-45 Score=320.74 Aligned_cols=265 Identities=21% Similarity=0.245 Sum_probs=239.5
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh-cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV-NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY 174 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 174 (424)
+|.||||.|+..|+.+++++|++.|++ ++.. +..|.||||+|+..|+.+++++|+++|+++. ..+..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~ 71 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-----------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKN 71 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC-----------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCC
Confidence 578999999999999999999999987 3444 6789999999999999999999999999976 77888
Q ss_pred CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCccccc----------CC
Q 014436 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVT----------DQ 244 (424)
Q Consensus 175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~----------~~ 244 (424)
|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+... +.. +.
T Consensus 72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY----GKVKALKFLYKRGANV-NLRRKTKEDQERLRK 146 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT----TCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh----CCHHHHHHHHHhCCCc-ccccccHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999 9999999999998763 444 77
Q ss_pred CCChHHHHHHhcCChhHHHHHhhc-cccccccccCCCchHHHHHHhcCC----HHHHHHHHhhCCCccccccCCCCcHHH
Q 014436 245 YGWTPIHYAAYHGKYWINDLLEID-QTATNIADKDRKMTALHLAAGRGH----ARTVETILSLAPECFELVDNRRWNFLH 319 (424)
Q Consensus 245 ~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~ 319 (424)
.|.||||.|+..|+.+++++|... +...+..+. .|.||||.|+..++ .+++++|++.|+++ +.++..|.||||
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~ 224 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLI 224 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHH
Confidence 899999999999999988888765 555555554 88999999999998 89999999999986 788999999999
Q ss_pred HHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcC
Q 014436 320 YAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND 382 (424)
Q Consensus 320 ~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~ 382 (424)
+|+..++.+++++|++.. |++++.+|..|+||||+|++.++.+++++|++ +|++++.+|.
T Consensus 225 ~A~~~~~~~~v~~Ll~~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~-~Ga~~~~~d~ 284 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL 284 (285)
T ss_dssp HHHHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred HHHHcCCHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCcccc
Confidence 999999999999999943 88999999999999999999999999999988 8999998874
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.3e-44 Score=327.04 Aligned_cols=324 Identities=20% Similarity=0.168 Sum_probs=269.9
Q ss_pred cCCCHHHHHHHHcCCCchhHHHHHH-HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHH
Q 014436 23 SQTDPKLLKAAADGNAEPFKDMARE-VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPL 101 (424)
Q Consensus 23 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L 101 (424)
..+.++|+.||..|+.+.|+.++.. +.+....+..|.||||+| +..|+.+++++|++. +..++.+|..|.|||
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L 95 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQH----GADVHAKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCcHH
Confidence 3456889999999999999999985 665567888999999999 999999999999986 788899999999999
Q ss_pred HHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHH
Q 014436 102 HVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYM 181 (424)
Q Consensus 102 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 181 (424)
|+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|++.. ..+..|.||+++
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~ 163 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGAC-----------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDM 163 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHH
Confidence 999999999999999999988 66778899999999999999999999999999966 778889999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC---
Q 014436 182 AAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK--- 258 (424)
Q Consensus 182 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~--- 258 (424)
|+..+..+.+++.... +++..++.. +..+.+..++...... ...+..|.||||+|+..++
T Consensus 164 a~~~~~~~~~~~~~~~------------~~~~~~~~~----~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~ 226 (351)
T 3utm_A 164 APTPELRERLTYEFKG------------HSLLQAARE----ADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKR 226 (351)
T ss_dssp CSSHHHHHHHHHHHHH------------HHHHHHHHT----TCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTH
T ss_pred HhhhhhHHHHHhhhcc------------cHHHHHHHh----ccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccH
Confidence 9988888888776643 356777777 8899999888877654 4567889999999999954
Q ss_pred hhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCc
Q 014436 259 YWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPF 338 (424)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~ 338 (424)
.+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|++.
T Consensus 227 ~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-- 302 (351)
T 3utm_A 227 KQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSY-- 302 (351)
T ss_dssp HHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCCcCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc--
Confidence 5588888888887776665 8999999999999999999999999997 88999999999999999999999999998
Q ss_pred cccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhc
Q 014436 339 ARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYG 394 (424)
Q Consensus 339 ~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~ 394 (424)
|++++.+|..|+||+|+| ..+++++|.+. + ......+.+++..|.+.
T Consensus 303 -gad~~~~~~~g~tal~~a----~~~~~~~l~~~-~---~~~~~~~~~~l~~A~~~ 349 (351)
T 3utm_A 303 -GSDPSIISLQGFTAAQMG----NEAVQQILSES-T---PMRTSDVDYRLLEASKA 349 (351)
T ss_dssp -TCCTTCCCTTSCCHHHHS----CHHHHHHHHHC----------------------
T ss_pred -CCCCCCcCCCCCChhhhh----hHHHHHHHHhc-c---ccccCcceeehhhhhcc
Confidence 999999999999999998 44566666553 2 34455677888887653
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-43 Score=309.99 Aligned_cols=263 Identities=21% Similarity=0.190 Sum_probs=146.2
Q ss_pred CCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhh-ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436 58 RNTILHINIMCQDAENASTKFVEEILEICPALLIQV-NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136 (424)
Q Consensus 58 g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~ 136 (424)
|.|+||+| ++.|+.+++++|++. +..++.. +..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 5 g~~~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~ 67 (285)
T 1wdy_A 5 DNHLLIKA--VQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----------PVL 67 (285)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred cchHHHHH--HHcCCHHHHHHHHHc----CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------Ccc
Confidence 34444444 444444444444443 2333333 34445555555555555555555555544 233
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC----------CC
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE----------GP 206 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~ 206 (424)
.+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.. +.
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhcc
Confidence 44455555555555555555555555555433 34444555555555555555555555555554444 44
Q ss_pred CCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC----hhHHHHHhhccccccccccCCCch
Q 014436 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK----YWINDLLEIDQTATNIADKDRKMT 282 (424)
Q Consensus 207 ~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~t 282 (424)
.|.||||+|+.. ++.+++++|++..+..++..+..|.||||+|+..+. .++.++|...+...+..+. .|.|
T Consensus 147 ~g~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~-~g~t 221 (285)
T 1wdy_A 147 GGATALMDAAEK----GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKT 221 (285)
T ss_dssp CCCCHHHHHHHH----TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCC
T ss_pred CCCcHHHHHHHc----CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCC-CCCc
Confidence 455555555555 555555555554222244455555555555555554 3455555555544444443 6677
Q ss_pred HHHHHHhcCCHHHHHHHHh-hCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCcccccccccc
Q 014436 283 ALHLAAGRGHARTVETILS-LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGD 347 (424)
Q Consensus 283 ~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d 347 (424)
|||+|+..++.+++++|++ .|.++ +.+|..|+||||+|+..++.+++++|+++ |++++.+|
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~---Ga~~~~~d 283 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGD 283 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSS
T ss_pred HHHHHHHcCCHHHHHHHHhccCCCc-cccCCCCCcHHHHHHHcCcHHHHHHHHHc---CCCCCccc
Confidence 7777777777777777777 56664 66777788888888888888888888777 77777665
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-44 Score=329.39 Aligned_cols=315 Identities=17% Similarity=0.129 Sum_probs=218.2
Q ss_pred CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436 24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV 103 (424)
Q Consensus 24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~ 103 (424)
....+|..|+..|+.+.++.+++...... .-.+++.-+ ...|+.+++++++.. ..+..|.||||.
T Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~g~~~~~~~~~~~---------~~~~~g~t~L~~ 100 (373)
T 2fo1_E 36 SSQHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGN--DFLGDFNHTNLQIPT---------EPEPESPIKLHT 100 (373)
T ss_dssp -------------------------------------------------------------------------CCCHHHH
T ss_pred ccccccccccCCccccchhhhhhhhcccc----CccccCCCC--Ccccccccccccccc---------CCCCCCccHHHH
Confidence 34456888999999999999998655321 223456667 777888888876553 357889999999
Q ss_pred HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhc-CCCCcHHHHHHhCCCHHHHHHHh--------hcCCCCCCCCCCC
Q 014436 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN-NKKNTALHDAMFPGNMEVVKILT--------REDPDYPYSANDY 174 (424)
Q Consensus 104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~~~ 174 (424)
|+..+. +++++|+... ++..| ..|.||||+|+..|+.+++++|+ +.|.+++ ..+..
T Consensus 101 Aa~~~~-~~~~~L~~~~-------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~d~~ 165 (373)
T 2fo1_E 101 EAAGSY-AITEPITRES-------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCD 165 (373)
T ss_dssp HHHSSS-CCCSCCSTTT-------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTT
T ss_pred HhcCCc-hHHHHhcccc-------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CCCCC
Confidence 999654 7888876532 55667 68999999999999998887776 7899876 77889
Q ss_pred CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC--CcccccCCCCChHHHH
Q 014436 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK--SLLKVTDQYGWTPIHY 252 (424)
Q Consensus 175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~--~~~~~~~~~~~t~l~~ 252 (424)
|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. ++.+++++|+..+. ..++..+..|.||||+
T Consensus 166 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~ 241 (373)
T 2fo1_E 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN----RDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241 (373)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT----TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred CCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC----CCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999 99999999998762 2357888999999999
Q ss_pred HHhcC---ChhHHHHHhhcccccccc-------ccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 014436 253 AAYHG---KYWINDLLEIDQTATNIA-------DKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322 (424)
Q Consensus 253 a~~~~---~~~~~~~l~~~~~~~~~~-------~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~ 322 (424)
|+..+ ..+++++|...+...+.. .+..|.||||+|+..|+.+++++|++.+....+.+|..|+||||+|+
T Consensus 242 A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~ 321 (373)
T 2fo1_E 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA 321 (373)
T ss_dssp HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred HHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence 99987 566888887776665441 22378899999999999999999998873334888899999999999
Q ss_pred HcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchh
Q 014436 323 ASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHAN 376 (424)
Q Consensus 323 ~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~ 376 (424)
..|+.+++++|++. |++++.+|..|+||||+|+..++.+++++|++ +|++
T Consensus 322 ~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~-~~a~ 371 (373)
T 2fo1_E 322 QEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDR-CRPE 371 (373)
T ss_dssp HHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT-TC--
T ss_pred HcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCcc
Confidence 99999999999988 88899999999999999999999999988887 5654
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.6e-43 Score=306.17 Aligned_cols=252 Identities=17% Similarity=0.123 Sum_probs=157.5
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND 173 (424)
Q Consensus 94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 173 (424)
...|.|+||+|+..|+.+.+..++..+.............++..|..|.||||+|+..|+.+++++|++.|.+++ ..+.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence 456889999999999987777766654331100000000045678899999999999999999999999999876 7788
Q ss_pred CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253 (424)
Q Consensus 174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 253 (424)
.|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.+... +. +.
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~-~~-~~--------- 155 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS----GSWDCVNLLLQHGASV-QP-ES--------- 155 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCCS-SC-SC---------
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc----CHHHHHHHHHHCCCCC-CC-CC---------
Confidence 899999999999999999999999999999999999999999998 9999999999877653 21 22
Q ss_pred HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHh
Q 014436 254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPL 333 (424)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 333 (424)
.|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|
T Consensus 156 -------------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~L 209 (285)
T 3d9h_A 156 -------------------------DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKL 209 (285)
T ss_dssp -------------------------TTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred -------------------------CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 2445555555556666666666666554 55566666666666666666666666
Q ss_pred hhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436 334 LRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK 392 (424)
Q Consensus 334 l~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~ 392 (424)
++. |++++. |..|+||||+|+..++.+++++|++ +|++++.+|..|+||+|+|.
T Consensus 210 l~~---ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 210 LES---GADVNQ-GKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp HHT---TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSC
T ss_pred HHC---CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhc
Confidence 665 555553 5566666666666666666666655 46666666666666666665
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.8e-43 Score=319.19 Aligned_cols=299 Identities=17% Similarity=0.112 Sum_probs=224.4
Q ss_pred eeeeccccCCCCcccccccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHH
Q 014436 5 ISIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILE 84 (424)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~ 84 (424)
..+.....+.+.+.........+.+..+...|+++++++++... .+..|.|+||+| +..+ .+++++|++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~A--a~~~-~~~~~~L~~--- 114 (373)
T 2fo1_E 46 YDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTE--AAGS-YAITEPITR--- 114 (373)
T ss_dssp -----------------------------------------------------CCCHHHHH--HHSS-SCCCSCCST---
T ss_pred CCccccchhhhhhhhccccCccccCCCCCccccccccccccccC-----CCCCCccHHHHH--hcCC-chHHHHhcc---
Confidence 33444444444444333322334567788889999999987653 456899999999 8844 578777643
Q ss_pred hCchhhhhhc-cCCCcHHHHHHHcCcHHHHHHHH--------HhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHH
Q 014436 85 ICPALLIQVN-AKGDTPLHVAAKFGHSDIVRVLI--------DRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155 (424)
Q Consensus 85 ~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~ 155 (424)
..++..| ..|.||||+|+..|+.+++++|+ +.|++ ++..|..|.||||+|+..|+.+
T Consensus 115 ---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-----------vn~~d~~g~TpL~~A~~~g~~~ 180 (373)
T 2fo1_E 115 ---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-----------VNAMDCDENTPLMLAVLARRRR 180 (373)
T ss_dssp ---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-----------TTCCCTTSCCHHHHHHHHTCHH
T ss_pred ---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-----------CcCCCCCCCCHHHHHHHcChHH
Confidence 3567777 78999999999999998888776 67777 6778899999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC---CCCCCCCCCCCcHHHHHHHccccCC---cHHHHH
Q 014436 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC---TSLSHEGPNGKTALHAAVMYFDFKG---DHHAMR 229 (424)
Q Consensus 156 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~t~L~~a~~~~~~~~---~~~~~~ 229 (424)
++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++ ++++..+..|.||||+|+.. + +.++++
T Consensus 181 iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~----~~~~~~~~v~ 255 (373)
T 2fo1_E 181 LVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN----EGRDQVASAK 255 (373)
T ss_dssp HHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS----CSTTHHHHHH
T ss_pred HHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh----CCcchHHHHH
Confidence 9999999999977 77889999999999999999999999998 89999999999999999998 6 899999
Q ss_pred HHHhhcCCccc--------ccCCCCChHHHHHHhcCChhHHHHHhhcc-ccccccccCCCchHHHHHHhcCCHHHHHHHH
Q 014436 230 QLFGRKKSLLK--------VTDQYGWTPIHYAAYHGKYWINDLLEIDQ-TATNIADKDRKMTALHLAAGRGHARTVETIL 300 (424)
Q Consensus 230 ~Ll~~~~~~~~--------~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll 300 (424)
+|++.+... + ..+..|.||||+|+..|+.+++++|...+ ...+..+. .|.||||+|+..|+.+++++|+
T Consensus 256 ~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~-~g~TpL~~A~~~g~~~iv~~Ll 333 (373)
T 2fo1_E 256 LLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLI 333 (373)
T ss_dssp HHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHH
Confidence 999998764 3 25778999999999999999888888665 55555555 8999999999999999999999
Q ss_pred hhCCCccccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436 301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN 336 (424)
Q Consensus 301 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~ 336 (424)
+.|+++ +.+|..|+||||+|+.+++.+++++|+++
T Consensus 334 ~~gad~-~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 334 QQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HTTCCS-SCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HcCCCc-cCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 999997 88999999999999999999999999997
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.3e-41 Score=293.88 Aligned_cols=220 Identities=14% Similarity=0.052 Sum_probs=166.4
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHhhcCC----------CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCC
Q 014436 139 NKKNTALHDAMFPGNMEVVKILTREDP----------DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208 (424)
Q Consensus 139 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 208 (424)
..|.|+||+|+..|+.+.+..++..++ ......+..|.||||+|+..|+.+++++|++.|++++.++..|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g 92 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH 92 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 578899999999999877776654432 1233577889999999999999999999999999999999999
Q ss_pred CcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHH
Q 014436 209 KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAA 288 (424)
Q Consensus 209 ~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~ 288 (424)
.||||+|+.. ++.+++++|++.+.. ++..+ ..|.||||+|+
T Consensus 93 ~t~L~~A~~~----g~~~~v~~Ll~~ga~-~~~~~----------------------------------~~g~t~L~~A~ 133 (285)
T 3d9h_A 93 VSPLHEACLG----GHLSCVKILLKHGAQ-VNGVT----------------------------------ADWHTPLFNAC 133 (285)
T ss_dssp CCHHHHHHHT----TCHHHHHHHHHTTCC-SSCCC----------------------------------TTCCCHHHHHH
T ss_pred CCHHHHHHHC----CcHHHHHHHHHCCCC-CCCCC----------------------------------CCCCCHHHHHH
Confidence 9999999998 999999999987654 23222 25667888888
Q ss_pred hcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhh
Q 014436 289 GRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRY 368 (424)
Q Consensus 289 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~ 368 (424)
..|+.+++++|++.|+++ + .+..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|+..++.+++++
T Consensus 134 ~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 208 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAY---GGNIDHKISHLGTPLYLACENQQRACVKK 208 (285)
T ss_dssp HHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHT---TCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 888889999999999886 3 345699999999999999999999998 89999999999999999999999999999
Q ss_pred hccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHH
Q 014436 369 MSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSI 405 (424)
Q Consensus 369 LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~ 405 (424)
|++ .|++++. |..|+||||+|+.. ++..++++.+
T Consensus 209 Ll~-~ga~~~~-~~~g~t~L~~A~~~-~~~~~v~~Ll 242 (285)
T 3d9h_A 209 LLE-SGADVNQ-GKGQDSPLHAVVRT-ASEELACLLM 242 (285)
T ss_dssp HHH-TTCCTTC-CBTTBCHHHHHHHT-TCHHHHHHHH
T ss_pred HHH-CCCCCCC-CCCCCCHHHHHHHc-CCHHHHHHHH
Confidence 998 7999995 89999999999864 7777777443
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=288.49 Aligned_cols=246 Identities=15% Similarity=0.086 Sum_probs=219.6
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcc
Q 014436 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYF 219 (424)
Q Consensus 140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~ 219 (424)
+|+||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~- 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS- 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-
Confidence 58899999999999999999999999976 7888999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHH
Q 014436 220 DFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETI 299 (424)
Q Consensus 220 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~L 299 (424)
++.+++++|++.+... + .+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+..++.+++++|
T Consensus 80 ---~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~L 153 (261)
T 2xai_A 80 ---GSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKL 153 (261)
T ss_dssp ---TCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTTCHHHHHHH
T ss_pred ---CCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHhCCHHHHHHH
Confidence 9999999999998774 3 355699999999999999999999888887776665 899999999999999999999
Q ss_pred HhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccc-----
Q 014436 300 LSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTH----- 374 (424)
Q Consensus 300 l~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g----- 374 (424)
++.|+++ + .+..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|+. +.++++.|++..+
T Consensus 154 l~~g~~~-~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpl~~A~~--~~~~~~~ll~~~~~~~l~ 226 (261)
T 2xai_A 154 LESGADV-N-QGKGQDSPLHAVARTASEELACLLMDF---GADTQAKNAEGKRPVELVPP--ESPLAQLFLEREGPPSLM 226 (261)
T ss_dssp HHHTCCT-T-CCBTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCT--TCTHHHHHHHC-CCCCHH
T ss_pred HHcCCCC-C-CCCCCCChHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCChhhhccc--cccHHHHHHhccCCccHH
Confidence 9999997 4 488999999999999999999999998 99999999999999999996 4568888887433
Q ss_pred --hhhhhhcCCCCchhhHHhhcCchhhHH
Q 014436 375 --ANYQAVNDQNVSVGHIMKYGYPELLVI 401 (424)
Q Consensus 375 --~~~~~~~~~g~t~l~~a~~~~~~~~~~ 401 (424)
++++.+|..|+||+|+|.+. +-...+
T Consensus 227 ~~~~~~~r~~~g~t~l~~~~~~-~~p~~l 254 (261)
T 2xai_A 227 QLCRLRIRKCFGIQQHHKITKL-VLPEDL 254 (261)
T ss_dssp HHHHHHHHTTSCTTCGGGGGGS-SSCHHH
T ss_pred HHHHHHHHHHhchhccccCccc-CCcHHH
Confidence 57889999999999999753 333333
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.7e-41 Score=289.30 Aligned_cols=230 Identities=21% Similarity=0.173 Sum_probs=163.5
Q ss_pred HHHhcCCCCcHHHHHHhCC-------------CHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436 134 IRMVNNKKNTALHDAMFPG-------------NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200 (424)
Q Consensus 134 i~~~~~~g~t~L~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 200 (424)
++.+|.+|.||||+|+..| +.+++++|++.|+++....+..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 6788999999999999977 899999999999998777789999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCC
Q 014436 201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK 280 (424)
Q Consensus 201 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ 280 (424)
++..+..|.||||+|+.. ++.+++++|++.+...++..+..|.||||+|+..++.+++++|...+...+..+. .|
T Consensus 83 ~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g 157 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSA----DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LG 157 (253)
T ss_dssp TTCCCTTSCCHHHHHHHH----TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT-TS
T ss_pred CCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC-CC
Confidence 999999999999999999 9999999999998866788888888888888888888877777777666565554 77
Q ss_pred chHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhc
Q 014436 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV 360 (424)
Q Consensus 281 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~ 360 (424)
.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|++.
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~ 233 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQER 233 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHc
Confidence 78888888888888888888888775 66777888888888888888888888877 777888888888888888888
Q ss_pred CCcchhhhhccc
Q 014436 361 RPSEFNRYMSRT 372 (424)
Q Consensus 361 ~~~~~~~~LL~~ 372 (424)
|+.+++++|...
T Consensus 234 g~~~i~~~l~~~ 245 (253)
T 1yyh_A 234 MHHDIVRLLDLE 245 (253)
T ss_dssp TCHHHHHHHHC-
T ss_pred CCHHHHHHHHHH
Confidence 888888777653
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.5e-41 Score=292.35 Aligned_cols=253 Identities=17% Similarity=0.148 Sum_probs=226.1
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG 175 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 175 (424)
+|+||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g 69 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-----------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADW 69 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-----------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCC
Confidence 589999999999999999999999988 56788899999999999999999999999999976 778899
Q ss_pred CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436 176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255 (424)
Q Consensus 176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 255 (424)
.||||+|+..|+.+++++|+++|++++. +..|.||||+|+.. ++.+++++|++.+.. ++..+..|.||||+|+.
T Consensus 70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 143 (261)
T 2xai_A 70 HTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARR----GHVECVNSLIAYGGN-IDHKISHLGTPLYLACE 143 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHc----CcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence 9999999999999999999999999885 45699999999999 999999999999877 58899999999999999
Q ss_pred cCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhh
Q 014436 256 HGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335 (424)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 335 (424)
.|+.+++++|...+...+. + ..|.||||+|+..++.+++++|++.|+++ +.+|..|+||+|+|+.++ ++++.|++
T Consensus 144 ~~~~~~v~~Ll~~g~~~~~-~-~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpl~~A~~~~--~~~~~ll~ 218 (261)
T 2xai_A 144 NQQRACVKKLLESGADVNQ-G-KGQDSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELVPPES--PLAQLFLE 218 (261)
T ss_dssp TTCHHHHHHHHHHTCCTTC-C-BTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTTC--THHHHHHH
T ss_pred hCCHHHHHHHHHcCCCCCC-C-CCCCChHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCChhhhccccc--cHHHHHHh
Confidence 9999999888888777663 3 48999999999999999999999999996 889999999999999654 58888888
Q ss_pred CCcc-----ccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436 336 NPFA-----RILINEGDAKGNTPLHVFAAVRPSEFNRYMSR 371 (424)
Q Consensus 336 ~~~~-----~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~ 371 (424)
.... .++++.+|..|+||+|.|.+...++.++.+|.
T Consensus 219 ~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 219 REGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp C-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred ccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 7422 25678889999999999999988888876664
No 16
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.5e-41 Score=295.14 Aligned_cols=250 Identities=19% Similarity=0.089 Sum_probs=190.5
Q ss_pred HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCC--CCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHH
Q 014436 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDY--PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212 (424)
Q Consensus 135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L 212 (424)
+.+|.+|.||||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 457889999999999999999999999998872 236788899999999999999999999999999999999999999
Q ss_pred HHHHHccccCCcHHHHHHHHhhcCCcc------------cccCCCCChHHHHHHhcCChh-HHHHHhhccccccccccCC
Q 014436 213 HAAVMYFDFKGDHHAMRQLFGRKKSLL------------KVTDQYGWTPIHYAAYHGKYW-INDLLEIDQTATNIADKDR 279 (424)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~Ll~~~~~~~------------~~~~~~~~t~l~~a~~~~~~~-~~~~l~~~~~~~~~~~~~~ 279 (424)
|+|+.. ++.+++++|++.++... ......+.++++.+...+... ....+...+...+..+ ..
T Consensus 83 ~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 157 (282)
T 1oy3_D 83 HLACRV----RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YD 157 (282)
T ss_dssp HHHTTT----TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC-TT
T ss_pred HHHHHc----CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC-CC
Confidence 999999 99999999999875421 112234456666666554433 3333333334444444 48
Q ss_pred CchHHHHHHhcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHH
Q 014436 280 KMTALHLAAGRGHARTVETILSLAPECFELVD-NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA 358 (424)
Q Consensus 280 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~ 358 (424)
|.||||+|+..|+.+++++|++.|+++ +..+ ..|+||||+|+..++.+++++|++. |++++.+|..|+||||+|+
T Consensus 158 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~ 233 (282)
T 1oy3_D 158 GHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSAL 233 (282)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHH
Confidence 999999999999999999999999997 5565 4599999999999999999999998 9999999999999999999
Q ss_pred hcCCcchhhhhccccchhhhhhcCCCCchhhHHhhc
Q 014436 359 AVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYG 394 (424)
Q Consensus 359 ~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~ 394 (424)
..++.+++++|++ +|++++.+|..|+||+++|...
T Consensus 234 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 234 LRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp TSSCHHHHHHHHH-TTCCCCCCC-------------
T ss_pred HcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCc
Confidence 9999999999998 8999999999999999999654
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1e-41 Score=310.83 Aligned_cols=265 Identities=21% Similarity=0.132 Sum_probs=138.4
Q ss_pred hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN 172 (424)
Q Consensus 93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 172 (424)
.|..|.||||+|+..|+.++|++|+++|++ ++..|..|.||||+|+..|+.+++++|++.|++.. +
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~ 81 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVS-----------PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---L 81 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---C
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---c
Confidence 344444555555555555555555555444 33444445555555555555555555555544322 2
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHHh----CCCCCC-----------------CCCCCCcHHHHHHHccccCC--cHHHHH
Q 014436 173 DYGKTPLYMAAESESSDMVLTLLEN----CTSLSH-----------------EGPNGKTALHAAVMYFDFKG--DHHAMR 229 (424)
Q Consensus 173 ~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~~~~~~t~L~~a~~~~~~~~--~~~~~~ 229 (424)
..|.||||+|+..|+.+++++|++. +.+++. .+..|.||||+|+.. + +.++++
T Consensus 82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~----g~~~~~~v~ 157 (364)
T 3ljn_A 82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL----GPEYLEMIK 157 (364)
T ss_dssp BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS----CGGGHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc----CCchHHHHH
Confidence 2344555555555555555555554 333332 333444444444444 4 444444
Q ss_pred HHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhcccc-----ccccccCCCchHHHHHHhcCCHHHHHHHHhhCC
Q 014436 230 QLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-----TNIADKDRKMTALHLAAGRGHARTVETILSLAP 304 (424)
Q Consensus 230 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~ 304 (424)
+|++.+.. ++..+..|.||||+|+..|+.+++++|...+.. .+..+. .|.||||+|+..|+.+++++|++.|+
T Consensus 158 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga 235 (364)
T 3ljn_A 158 ILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVAMRFVEMGI 235 (364)
T ss_dssp HHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred HHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 44444333 233444444444444444444444443333322 233333 56666666666666666666666666
Q ss_pred CccccccCCCCcHHHHHHHcCCccchHHhhhCCcccccc------------ccccCCCCcHHHHHHhcCCcchhhhhccc
Q 014436 305 ECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILI------------NEGDAKGNTPLHVFAAVRPSEFNRYMSRT 372 (424)
Q Consensus 305 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i------------~~~d~~g~t~L~~A~~~~~~~~~~~LL~~ 372 (424)
++ +.+|..|+||||+|+..++.+++++|++. ++++ ...+..|+|||+.|+..++.+.+..||.
T Consensus 236 d~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~- 310 (364)
T 3ljn_A 236 DV-NMEDNEHTVPLYLSVRAAMVLLTKELLQK---TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ- 310 (364)
T ss_dssp CT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHH---SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH-
T ss_pred CC-CCCCCCCCCHHHHHHHhChHHHHHHHHHc---CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH-
Confidence 65 56666667777777777776677666665 3222 2245677888888888887777777777
Q ss_pred cchhhhhhcC
Q 014436 373 THANYQAVND 382 (424)
Q Consensus 373 ~g~~~~~~~~ 382 (424)
.+++....+.
T Consensus 311 ~~~~~~~~~~ 320 (364)
T 3ljn_A 311 EKLDEVVRSL 320 (364)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHhhcc
Confidence 4555444333
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.7e-40 Score=290.72 Aligned_cols=255 Identities=19% Similarity=0.122 Sum_probs=176.5
Q ss_pred hhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCC
Q 014436 91 IQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS 170 (424)
Q Consensus 91 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~ 170 (424)
+.+|..|.||||+|+..|+.++|++|++.|++... ++.++..|.||||+|+..|+.+++++|+++|++++ .
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~ 73 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY--------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-V 73 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG--------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-C
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc--------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-C
Confidence 45677788888888888888888888877765221 44566777888888888888888888888877765 6
Q ss_pred CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC-------------CCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE-------------GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS 237 (424)
Q Consensus 171 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-------------~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~ 237 (424)
.+..|.||||+|+..|+.+++++|++++++.... ...+.++++.+... ........++.....
T Consensus 74 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 149 (282)
T 1oy3_D 74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP----NPENEEEPRDEDWRL 149 (282)
T ss_dssp CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------CCCGGG
T ss_pred CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc----ccchhhhhhhhhhhh
Confidence 6677888888888888888888888777553321 22344555555544 333333333333333
Q ss_pred cccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcH
Q 014436 238 LLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF 317 (424)
Q Consensus 238 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 317 (424)
.++..+..|.||||+|+..|+.+++++|...+...+..+...|.||||+|+..|+.+++++|++.|+++ +.++..|+||
T Consensus 150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tp 228 (282)
T 1oy3_D 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTP 228 (282)
T ss_dssp GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCH
Confidence 467888999999999999999999998888888777776656999999999999999999999999997 8899999999
Q ss_pred HHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCC
Q 014436 318 LHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRP 362 (424)
Q Consensus 318 l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~ 362 (424)
||+|+..++.+++++|+++ |++++.+|..|.|||++|.....
T Consensus 229 L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 229 LGSALLRPNPILARLLRAH---GAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHTSSCHHHHHHHHHT---TCCCCCCC---------------
T ss_pred HHHHHHcCCcHHHHHHHHc---CCCcCcCCCcccccccccCCccc
Confidence 9999999999999999998 99999999999999999987653
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.3e-39 Score=281.17 Aligned_cols=230 Identities=20% Similarity=0.219 Sum_probs=180.7
Q ss_pred hhhhccCCCcHHHHHHHcC-------------cHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHH
Q 014436 90 LIQVNAKGDTPLHVAAKFG-------------HSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156 (424)
Q Consensus 90 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~ 156 (424)
++.+|..|.||||+|+..| +.+++++|++.|++. .+..|..|.||||+|+..|+.++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~----------~~~~d~~g~t~L~~A~~~g~~~~ 72 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL----------HNQTDRTGETALHLAARYSRSDA 72 (253)
T ss_dssp -----------------------------------------------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc----------ccccCCCCCcHHHHHHHcCCHHH
Confidence 4456666677777776655 899999999999873 23458899999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCC-CCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT-SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK 235 (424)
Q Consensus 157 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~ 235 (424)
+++|+++|++++ ..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+.. ++.+++++|++.+
T Consensus 73 v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 73 AKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL----AVEGMLEDLINSH 147 (253)
T ss_dssp HHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH----TCSSHHHHHHHTT
T ss_pred HHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc----ChHHHHHHHHHcC
Confidence 999999999976 778899999999999999999999999996 8999999999999999999 9999999999988
Q ss_pred CCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCC
Q 014436 236 KSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRW 315 (424)
Q Consensus 236 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 315 (424)
.. ++..+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|+++ +.+|..|+
T Consensus 148 ~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~ 224 (253)
T 1yyh_A 148 AD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANR-DITDHMDR 224 (253)
T ss_dssp CC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCC
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCC
Confidence 77 588999999999999999999999999988888777665 8999999999999999999999999996 88999999
Q ss_pred cHHHHHHHcCCccchHHhhhCC
Q 014436 316 NFLHYAVASFQLQDLKPLLRNP 337 (424)
Q Consensus 316 t~l~~A~~~~~~~~~~~ll~~~ 337 (424)
||+++|+++|+.+++++|....
T Consensus 225 tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 225 LPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp CHHHHHHHTTCHHHHHHHHC--
T ss_pred CHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999999999999998763
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.7e-39 Score=278.85 Aligned_cols=223 Identities=22% Similarity=0.225 Sum_probs=156.6
Q ss_pred HHHhcCCCCcHHHHHHhCCCHHHHHHHhh----cCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCC
Q 014436 134 IRMVNNKKNTALHDAMFPGNMEVVKILTR----EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209 (424)
Q Consensus 134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 209 (424)
++.+|.+|.||||+|+..|+.+++++|++ .+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 56788999999999999999999999997 566755 7788899999999999999999999999999999999999
Q ss_pred cHHHHHHHccccCCcHHHHHHHHhhcCC---cccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHH
Q 014436 210 TALHAAVMYFDFKGDHHAMRQLFGRKKS---LLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHL 286 (424)
Q Consensus 210 t~L~~a~~~~~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~ 286 (424)
||||+|+.. ++.+++++|+..+.. .++..+. .|.||||.
T Consensus 81 t~l~~A~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~----------------------------------~g~t~L~~ 122 (241)
T 1k1a_A 81 TAAHLACEH----RSPTCLRALLDSAAPGTLDLEARNY----------------------------------DGLTALHV 122 (241)
T ss_dssp CHHHHHHHT----TCHHHHHHHHHHSCTTSCCTTCCCT----------------------------------TSCCHHHH
T ss_pred CHHHHHHHc----CCHHHHHHHHHcCCCccccccccCc----------------------------------CCCcHHHH
Confidence 999999998 999999999988763 2233333 44555555
Q ss_pred HHhcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcch
Q 014436 287 AAGRGHARTVETILSLAPECFELVD-NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEF 365 (424)
Q Consensus 287 a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~ 365 (424)
|+..++.+++++|++.|+++ +..+ ..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|+..++.++
T Consensus 123 A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~ 198 (241)
T 1k1a_A 123 AVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPL 198 (241)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 55555556666666665554 3333 5566666666666666666666655 55566666666666666666666666
Q ss_pred hhhhccccchhhhhhcCCCCchhhHHhhcCchhhHH
Q 014436 366 NRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVI 401 (424)
Q Consensus 366 ~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~ 401 (424)
+++|++ +|++++.+|..|+||+++|+.. ++.+++
T Consensus 199 v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~-~~~~i~ 232 (241)
T 1k1a_A 199 VRTLVR-SGADSSLKNCHNDTPLMVARSR-RVIDIL 232 (241)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCTTTTCSSH-HHHHHH
T ss_pred HHHHHh-cCCCCCCcCCCCCCHHHHHHhc-CcHHHH
Confidence 665555 5666666666666666665532 444444
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.3e-40 Score=298.54 Aligned_cols=255 Identities=15% Similarity=0.100 Sum_probs=225.8
Q ss_pred HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213 (424)
Q Consensus 134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~ 213 (424)
.+..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++. ..|.||||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~ 89 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH 89 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence 55678889999999999999999999999999976 7888999999999999999999999999996554 57999999
Q ss_pred HHHHccccCCcHHHHHHHHhh----cCCcccc-----------------cCCCCChHHHHHHhcC--ChhHHHHHhhccc
Q 014436 214 AAVMYFDFKGDHHAMRQLFGR----KKSLLKV-----------------TDQYGWTPIHYAAYHG--KYWINDLLEIDQT 270 (424)
Q Consensus 214 ~a~~~~~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~l~~~~~ 270 (424)
+|+.. ++.+++++|++. +.. ++. .+..|.||||+|+..| +.+++++|...+.
T Consensus 90 ~A~~~----g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga 164 (364)
T 3ljn_A 90 LAVMA----NKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164 (364)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred HHHHc----CCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence 99999 999999999998 443 233 7788999999999999 8899999988888
Q ss_pred cccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCc----cccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccc
Q 014436 271 ATNIADKDRKMTALHLAAGRGHARTVETILSLAPEC----FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEG 346 (424)
Q Consensus 271 ~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~ 346 (424)
..+..+. .|.||||+|+..|+.+++++|++.|++. ++..+..|+||||+|+..++.+++++|++. |++++.+
T Consensus 165 ~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~~~~ 240 (364)
T 3ljn_A 165 SPTAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM---GIDVNME 240 (364)
T ss_dssp CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT---TCCTTCC
T ss_pred CCcccCC-CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCC
Confidence 7777665 8999999999999999999999999882 378899999999999999999999999998 9999999
Q ss_pred cCCCCcHHHHHHhcCCcchhhhhccccchhhhh------------hcCCCCchhhHHhhcCchhhHHH
Q 014436 347 DAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQA------------VNDQNVSVGHIMKYGYPELLVIN 402 (424)
Q Consensus 347 d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~------------~~~~g~t~l~~a~~~~~~~~~~~ 402 (424)
|..|+||||+|+..|+.+++++||+ +|++++. .+..|+||++.|... ++...+.
T Consensus 241 d~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~-~~~~~v~ 306 (364)
T 3ljn_A 241 DNEHTVPLYLSVRAAMVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD-PSKQEVL 306 (364)
T ss_dssp CTTSCCHHHHHHHTCCHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCC-HHHHHHH
T ss_pred CCCCCCHHHHHHHhChHHHHHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhc-cCHHHHH
Confidence 9999999999999999999999998 6887655 567889999998754 5555554
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.6e-39 Score=273.32 Aligned_cols=223 Identities=20% Similarity=0.257 Sum_probs=167.4
Q ss_pred HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 014436 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA 214 (424)
Q Consensus 135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~ 214 (424)
+..|..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence 3456667777777777777777777777777655 556667777777777777777777777777777777777777777
Q ss_pred HHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHH
Q 014436 215 AVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHAR 294 (424)
Q Consensus 215 a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~ 294 (424)
|+.. ++.+++++|++.++..++..+ ..|.||||.|+..++.+
T Consensus 84 A~~~----~~~~~~~~Ll~~~~~~~~~~~----------------------------------~~g~t~L~~A~~~~~~~ 125 (237)
T 3b7b_A 84 AAKK----GHYEVVQYLLSNGQMDVNCQD----------------------------------DGGWTPMIWATEYKHVD 125 (237)
T ss_dssp HHHT----TCHHHHHHHHTTTCCCTTCCC----------------------------------TTSCCHHHHHHHTTCHH
T ss_pred HHHc----CCHHHHHHHHhCCCCCcccCC----------------------------------CCCCCHHHHHHHcCCHH
Confidence 7776 777777777765533223222 25667777777777888
Q ss_pred HHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccc
Q 014436 295 TVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTH 374 (424)
Q Consensus 295 ~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g 374 (424)
++++|++.|+++ +.++..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|++.++.+++++|++ +|
T Consensus 126 ~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g 200 (237)
T 3b7b_A 126 LVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RD 200 (237)
T ss_dssp HHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TT
T ss_pred HHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cC
Confidence 888888888876 77788888888888888888888888887 78888888888888888888888888888887 78
Q ss_pred hhhhhhcCCCCchhhHHhhcCchhhHHH
Q 014436 375 ANYQAVNDQNVSVGHIMKYGYPELLVIN 402 (424)
Q Consensus 375 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 402 (424)
++++.+|..|+||+|+|... ++...+.
T Consensus 201 ad~~~~d~~g~t~l~~A~~~-~~~~~~~ 227 (237)
T 3b7b_A 201 SDVTLKNKEGETPLQCASLN-SQVWSAL 227 (237)
T ss_dssp CCTTCCCTTSCCHHHHSCTT-CHHHHHH
T ss_pred CCCCccCCCCCCHHHHHHHH-HHHHHHH
Confidence 88888888888888888753 5554444
No 23
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-39 Score=287.75 Aligned_cols=264 Identities=20% Similarity=0.158 Sum_probs=207.9
Q ss_pred hHHhhhccHHHHHHHHHhCch-----hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCC
Q 014436 68 CQDAENASTKFVEEILEICPA-----LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKN 142 (424)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~ 142 (424)
+..++.+.++.++........ .....+..|.||||.||..|+.++|++|+++|++ ++..|..|.
T Consensus 6 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~ 74 (299)
T 1s70_B 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-----------INYANVDGL 74 (299)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-----------TTCBCTTCC
T ss_pred HHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-----------CcccCCCCC
Confidence 556666655555543211111 1112345678999999999999999999999988 667788999
Q ss_pred cHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccC
Q 014436 143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK 222 (424)
Q Consensus 143 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~ 222 (424)
||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~---- 149 (299)
T 1s70_B 75 TALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE---- 149 (299)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH----
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc----
Confidence 99999999999999999999999976 7788899999999999999999999999999999999999999999988
Q ss_pred CcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhh
Q 014436 223 GDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302 (424)
Q Consensus 223 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~ 302 (424)
+..++++.++......++..+.. +.++++ ..+..++..
T Consensus 150 ~~~~~~~~ll~~~~~~~~~~~~~----------------------------------~~~~~~--------~~~~~~l~~ 187 (299)
T 1s70_B 150 AMEELLQNEVNRQGVDIEAARKE----------------------------------EERIML--------RDARQWLNS 187 (299)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHH----------------------------------HHHHHH--------HHHHHHHHH
T ss_pred chHHHHHHHHhhcCCCchhhhhh----------------------------------hhhHHH--------HHHHHHHhc
Confidence 88899888887654432211100 011111 123345555
Q ss_pred CCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcC
Q 014436 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND 382 (424)
Q Consensus 303 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~ 382 (424)
+.......+..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|.
T Consensus 188 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~ 263 (299)
T 1s70_B 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNK 263 (299)
T ss_dssp TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT
T ss_pred cCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCC
Confidence 5555456677889999999999999999999987 88899999999999999999999999988888 7999999999
Q ss_pred CCCchhhHHhh
Q 014436 383 QNVSVGHIMKY 393 (424)
Q Consensus 383 ~g~t~l~~a~~ 393 (424)
.|+||+++|.+
T Consensus 264 ~g~t~l~~A~~ 274 (299)
T 1s70_B 264 VGQTAFDVADE 274 (299)
T ss_dssp TSCCTTTSCCS
T ss_pred CCCCHHHHHHH
Confidence 99999999964
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.3e-38 Score=269.99 Aligned_cols=227 Identities=22% Similarity=0.253 Sum_probs=192.3
Q ss_pred hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC
Q 014436 90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY 169 (424)
Q Consensus 90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 169 (424)
++..|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|.++.
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 71 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-----------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD- 71 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-
Confidence 456788999999999999999999999999988 56778899999999999999999999999999866
Q ss_pred CCCCCCCcHHHHHHhcCChHHHHHHHHhC-CCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCCh
Q 014436 170 SANDYGKTPLYMAAESESSDMVLTLLENC-TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT 248 (424)
Q Consensus 170 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t 248 (424)
..+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+.. ++.+++++|++.+.. ++..+.
T Consensus 72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~-~~~~~~---- 142 (237)
T 3b7b_A 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY----KHVDLVKLLLSKGSD-INIRDN---- 142 (237)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCT----
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCC-CCccCC----
Confidence 67888999999999999999999999999 89999999999999999998 999999999987755 233332
Q ss_pred HHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCcc
Q 014436 249 PIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQ 328 (424)
Q Consensus 249 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~ 328 (424)
.|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+
T Consensus 143 ------------------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 191 (237)
T 3b7b_A 143 ------------------------------EENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYD 191 (237)
T ss_dssp ------------------------------TSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHH
T ss_pred ------------------------------CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHh
Confidence 4567777777777778888888888775 667888888888888888888
Q ss_pred chHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436 329 DLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR 371 (424)
Q Consensus 329 ~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~ 371 (424)
++++|++. |++++.+|..|+||||+|+..++.+.+..+++
T Consensus 192 ~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 192 CVVLFLSR---DSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHc---CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888887 78888888888888888888887765555543
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.7e-38 Score=269.39 Aligned_cols=222 Identities=21% Similarity=0.271 Sum_probs=150.6
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHc
Q 014436 139 NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218 (424)
Q Consensus 139 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~ 218 (424)
..+.+|||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 45789999999999999999999988776667888999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHH
Q 014436 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298 (424)
Q Consensus 219 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~ 298 (424)
++.+++++|++.+.. ++..+..|.||||+|+..++.+++++|...+...+..+. .|.||||.|+..|+.+++++
T Consensus 84 ----~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 84 ----GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp ----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHH
T ss_pred ----CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHH
Confidence 999999999988765 355555555555555555555554444444443333332 44455555555555555555
Q ss_pred HHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS 370 (424)
Q Consensus 299 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL 370 (424)
|++.|+++ +.++..|+||||+|+..++.+++++|++. |++++.+|..|+||||+|+..++.+++++|+
T Consensus 158 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 158 LLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp HHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred HHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence 55555443 44444555555555555555555555544 4445555555555555555444444444333
No 26
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.2e-38 Score=273.52 Aligned_cols=228 Identities=21% Similarity=0.197 Sum_probs=123.8
Q ss_pred cccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHH
Q 014436 55 LQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMI 134 (424)
Q Consensus 55 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i 134 (424)
|.+|.||||+| +..|+.+++++|++.+...+..++..|..|.||||+|+..|+.+++++|+++|++ +
T Consensus 6 d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~ 72 (241)
T 1k1a_A 6 DEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----------P 72 (241)
T ss_dssp -CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------T
T ss_pred CCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-----------c
Confidence 34455555555 5555555555555544444444444555555555555555555555555555544 2
Q ss_pred HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCC----CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCC
Q 014436 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDP----DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG-PNGK 209 (424)
Q Consensus 135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~ 209 (424)
+..+..|.||||+|+..|+.+++++|++.++ ++. ..+..|.||||+|+..++.+++++|+++|++++..+ ..|.
T Consensus 73 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~ 151 (241)
T 1k1a_A 73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR 151 (241)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCC
Confidence 3344445555555555555555555555544 222 334445555555555555555555555555554444 4445
Q ss_pred cHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHh
Q 014436 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289 (424)
Q Consensus 210 t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~ 289 (424)
||||+|+.. ++.+++++|++. +...+..+. .|.||||+|+.
T Consensus 152 t~L~~A~~~----~~~~~v~~Ll~~----------------------------------g~~~~~~~~-~g~t~L~~A~~ 192 (241)
T 1k1a_A 152 SPLIHAVEN----NSLSMVQLLLQH----------------------------------GANVNAQMY-SGSSALHSASG 192 (241)
T ss_dssp CHHHHHHHT----TCHHHHHHHHHT----------------------------------TCCTTCBCT-TSCBHHHHHHH
T ss_pred cHHHHHHHc----CCHHHHHHHHHc----------------------------------CCCCCCcCC-CCCCHHHHHHH
Confidence 555555544 444444444444 433333333 56677777777
Q ss_pred cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436 290 RGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN 336 (424)
Q Consensus 290 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~ 336 (424)
.++.+++++|++.|+++ +.+|..|.||+|+|+..++.++++.|.+.
T Consensus 193 ~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 193 RGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred cCCHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 77777777777777775 66777777888887777777777777765
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.6e-37 Score=264.67 Aligned_cols=225 Identities=23% Similarity=0.227 Sum_probs=207.7
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND 173 (424)
Q Consensus 94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 173 (424)
+..+.+|||.|+..|+.+.+++|++.+... ++..+..|.||||+|+..|+.+++++|++.|.+++ ..+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~ 71 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSL----------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDD 71 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG----------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCT
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhh----------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCC
Confidence 345789999999999999999999987653 55678899999999999999999999999999876 7788
Q ss_pred CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253 (424)
Q Consensus 174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 253 (424)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.. ++..+..|.||||+|
T Consensus 72 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A 146 (231)
T 3aji_A 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK----NRHEIAVMLLEGGAN-PDAKDHYDATAMHRA 146 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCCcHHHHH
Confidence 899999999999999999999999999999999999999999999 999999999998877 588899999999999
Q ss_pred HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHh
Q 014436 254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPL 333 (424)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 333 (424)
+..|+.+++++|...+...+..+. .|.||||+|+..++.+++++|++.|+++ +.++..|.||+++|+..++.+++++|
T Consensus 147 ~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 147 AAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 999999999999888877776665 8999999999999999999999999997 88999999999999999999999999
Q ss_pred hhC
Q 014436 334 LRN 336 (424)
Q Consensus 334 l~~ 336 (424)
.+.
T Consensus 225 ~~~ 227 (231)
T 3aji_A 225 EGE 227 (231)
T ss_dssp HHH
T ss_pred ccc
Confidence 886
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=275.03 Aligned_cols=223 Identities=17% Similarity=0.168 Sum_probs=147.6
Q ss_pred hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCH-HHHHHHhhcCCCCCCCC
Q 014436 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM-EVVKILTREDPDYPYSA 171 (424)
Q Consensus 93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~ 171 (424)
+|..+.+||+.||..|+.++|++|++.++...... ...++..+..|.|||+.|+..+.. .++++|++.|++++ ..
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~---~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~ 82 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA---EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VT 82 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------CCCCTT-CC
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc---cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-Cc
Confidence 56677899999999999999999999987643211 122667888999999999987765 58899999999977 78
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHH
Q 014436 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH 251 (424)
Q Consensus 172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~ 251 (424)
+..|+||||+|+..|+.+++++|++.+++++..+..|.||++.|+.. ++.++++.|++.+.. ++.+|..|
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~----~~~~~~~~Ll~~g~~-~n~~d~~g----- 152 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ----GHFQVVKCLLDSNAK-PNKKDLSG----- 152 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCC-SCCCCTTC-----
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccccc----ChHHHHHHHHHCCCC-CCCCCCCC-----
Confidence 88999999999999999999999999999999999999999999998 999999999987765 35545444
Q ss_pred HHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchH
Q 014436 252 YAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLK 331 (424)
Q Consensus 252 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 331 (424)
.||||+|+..|+.+++++|++.|+++ +.++..|+||||+|+..|+.++++
T Consensus 153 -----------------------------~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~ 202 (269)
T 4b93_B 153 -----------------------------NTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVE 202 (269)
T ss_dssp -----------------------------CCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred -----------------------------CCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHH
Confidence 45555555555666666666666665 666777777777777777777777
Q ss_pred HhhhCCccccccccccCCCCcHHHHHHhcCC
Q 014436 332 PLLRNPFARILINEGDAKGNTPLHVFAAVRP 362 (424)
Q Consensus 332 ~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~ 362 (424)
+|++. |++++.+|..|+||||+|++.+.
T Consensus 203 ~Ll~~---Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 203 LLLLH---GASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHT---TCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHC---CCCCCCcCCCCCCHHHHHHhCCc
Confidence 77776 67777777777777777766554
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=264.31 Aligned_cols=228 Identities=21% Similarity=0.264 Sum_probs=173.1
Q ss_pred hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA 171 (424)
Q Consensus 92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 171 (424)
..|..|.|||+.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|++++++.....
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 72 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYD-----------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCC-----------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc
Confidence 4577889999999999999999999999987 56778899999999999999999999999999888677
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHH
Q 014436 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH 251 (424)
Q Consensus 172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~ 251 (424)
+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++.+.. ++..+..|.||||
T Consensus 73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~ 147 (240)
T 3eu9_A 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF----GHTSIVAYLIAKGQD-VDMMDQNGMTPLM 147 (240)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc----CHHHHHHHHHhcCCC-ccccCCCCCcHHH
Confidence 77799999999999999999999999999999999999999999998 999999999988766 4667777777777
Q ss_pred HHHhcCC-hhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccch
Q 014436 252 YAAYHGK-YWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDL 330 (424)
Q Consensus 252 ~a~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~ 330 (424)
+|+..+. ..+.++|...+...+..+...|.||||.|+..++.+++++|++.|+++ +.++..|.|||++|++.++.+++
T Consensus 148 ~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~v 226 (240)
T 3eu9_A 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMI 226 (240)
T ss_dssp HHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHH
Confidence 7775554 335555555444444443334555555555555555555555555553 44555555555555555555555
Q ss_pred HHhhhC
Q 014436 331 KPLLRN 336 (424)
Q Consensus 331 ~~ll~~ 336 (424)
++|++.
T Consensus 227 ~~L~~~ 232 (240)
T 3eu9_A 227 NHLQEA 232 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.7e-37 Score=272.34 Aligned_cols=235 Identities=18% Similarity=0.152 Sum_probs=209.4
Q ss_pred HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213 (424)
Q Consensus 134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~ 213 (424)
++.+|..|.||||+|+..|+.+++++|+++|++++.. +|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence 5578899999999999999999999999999987633 4999999999999999999999999999999999999999
Q ss_pred HHHHccccCCcHHHHHHHHhhcCCcccccCCCC-ChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC
Q 014436 214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYG-WTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH 292 (424)
Q Consensus 214 ~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~ 292 (424)
+|+.. ++.+++++|++.+.. ++..+..| .||||+|+..|+.+++++|...+.... +...|.||||+|+..|+
T Consensus 101 ~A~~~----g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 101 YAVDS----GNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGH 173 (285)
T ss_dssp HHHHT----TCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHTTC
T ss_pred HHHHc----CCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHcCh
Confidence 99999 999999999999776 58889999 799999999999999999888776542 22278999999999999
Q ss_pred HHHHHHHHhhCCCccccccCCCCcH-HHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436 293 ARTVETILSLAPECFELVDNRRWNF-LHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR 371 (424)
Q Consensus 293 ~~~v~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~ 371 (424)
.+++++|++.|+++ +.++..|+|| ||+|+..++.+++++|++. |++++.+|. .|+..++.+++++|++
T Consensus 174 ~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~-------~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 174 VDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSANL-------ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp HHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence 99999999999996 8899999998 9999999999999999998 999999883 5678999999999998
Q ss_pred ccchhhhhhcCCCCchhhHHh
Q 014436 372 TTHANYQAVNDQNVSVGHIMK 392 (424)
Q Consensus 372 ~~g~~~~~~~~~g~t~l~~a~ 392 (424)
+|++++..+..+ .+.++.
T Consensus 243 -~g~~~~~~~~~~--~~~~~~ 260 (285)
T 3kea_A 243 -KHVEYKSDSYTK--DLDIVK 260 (285)
T ss_dssp -HHHHHTTCTTTT--TCHHHH
T ss_pred -cCCCCCCccccc--hHHHHh
Confidence 899987765433 344443
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=273.03 Aligned_cols=218 Identities=18% Similarity=0.197 Sum_probs=160.5
Q ss_pred HhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC-------CCCCCCCCcHHHHHHhcCCh-HHHHHHHHhCCCCCCCCCC
Q 014436 136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYP-------YSANDYGKTPLYMAAESESS-DMVLTLLENCTSLSHEGPN 207 (424)
Q Consensus 136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-------~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~ 207 (424)
.+|..+.+||+.|+..|+.++|++|++.+++.. ...+..|.|||+.|+..+.. .+++.|++.|++++..|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 456667789999999999999999998876531 23455678888888876654 4778888888888888888
Q ss_pred CCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHH
Q 014436 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLA 287 (424)
Q Consensus 208 ~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a 287 (424)
|.||||+|+.. ++.+++++|+..++.. +..+ ..|.||++.|
T Consensus 86 G~TpLh~A~~~----g~~~~v~~Ll~~~a~~-~~~~----------------------------------~~g~t~l~~a 126 (269)
T 4b93_B 86 GSSPLHVAALH----GRADLIPLLLKHGANA-GARN----------------------------------ADQAVPLHLA 126 (269)
T ss_dssp SCCHHHHHHHT----TCTTHHHHHHHTTCCT-TCCC----------------------------------TTCCCHHHHH
T ss_pred CCCHHHHHHHc----CcHHHHHHHHhcCCCc-CccC----------------------------------CCCCCccccc
Confidence 88888888887 7778888777765542 2222 2567888888
Q ss_pred HhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhh
Q 014436 288 AGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNR 367 (424)
Q Consensus 288 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~ 367 (424)
+..++.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++. |+++|.++..|+||||+|+..|+.++++
T Consensus 127 ~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gadvn~~~~~g~t~Lh~A~~~g~~~~v~ 202 (269)
T 4b93_B 127 CQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVIEKHVFVVE 202 (269)
T ss_dssp HHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred cccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCccccCCCcHHHHHHHcCCHHHHH
Confidence 8888899999999999997 88999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhccccchhhhhhcCCCCchhhHHhhcCchh
Q 014436 368 YMSRTTHANYQAVNDQNVSVGHIMKYGYPEL 398 (424)
Q Consensus 368 ~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~ 398 (424)
+||+ +|+|++.+|..|+||||+|++ ++++
T Consensus 203 ~Ll~-~Gad~~~~d~~G~TpL~~A~~-~~~i 231 (269)
T 4b93_B 203 LLLL-HGASVQVLNKRQRTAVDCAEQ-NSKI 231 (269)
T ss_dssp HHHH-TTCCSCCCCTTSCCSGGGSCT-TCHH
T ss_pred HHHH-CCCCCCCcCCCCCCHHHHHHh-CCcH
Confidence 9998 899999999999999999975 4664
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6.5e-37 Score=260.36 Aligned_cols=212 Identities=20% Similarity=0.250 Sum_probs=179.0
Q ss_pred CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC--CCCCC-CCCCCCcHHHHHHH
Q 014436 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC--TSLSH-EGPNGKTALHAAVM 217 (424)
Q Consensus 141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~-~~~~~~t~L~~a~~ 217 (424)
|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6789999999999999999999888877667888999999999999999999999988 44444 66778888888888
Q ss_pred ccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHH
Q 014436 218 YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE 297 (424)
Q Consensus 218 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~ 297 (424)
. ++.+++++|++.+.. ...+..+ ..|.||||.|+..++.++++
T Consensus 82 ~----~~~~~~~~Ll~~g~~--------------------------------~~~~~~~-~~g~t~L~~A~~~~~~~~~~ 124 (228)
T 2dzn_A 82 V----GNLEVVKSLYDRPLK--------------------------------PDLNKIT-NQGVTCLHLAVGKKWFEVSQ 124 (228)
T ss_dssp H----CCHHHHHHHHSSSSC--------------------------------CCTTCCC-TTCCCHHHHHHHTTCHHHHH
T ss_pred c----CCHHHHHHHHhCCCC--------------------------------cccccCC-cCCCCHHHHHHHcCCHhHHH
Confidence 7 888888888876521 1111122 25778888888888999999
Q ss_pred HHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccc-cccccccCCCCcHHHHHHhcCCcchhhhhccccchh
Q 014436 298 TILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR-ILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHAN 376 (424)
Q Consensus 298 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~-~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~ 376 (424)
+|++.|.++ +.++..|.||||+|+..++.+++++|++. | ++++.+|..|+||||+|+..++.+++++|++++|++
T Consensus 125 ~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~ 200 (228)
T 2dzn_A 125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200 (228)
T ss_dssp HHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTT---TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred HHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhc---CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 999999886 78899999999999999999999999998 6 889999999999999999999999999999558999
Q ss_pred hhhhcCCCCchhhHHhh
Q 014436 377 YQAVNDQNVSVGHIMKY 393 (424)
Q Consensus 377 ~~~~~~~g~t~l~~a~~ 393 (424)
++.+|..|+||+++|..
T Consensus 201 ~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 201 YDLVDNKGAKAEDVALN 217 (228)
T ss_dssp SCCBCTTSCBGGGGCSS
T ss_pred CCccCCCCCcHHHHHHH
Confidence 99999999999999974
No 33
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.6e-37 Score=258.98 Aligned_cols=216 Identities=20% Similarity=0.168 Sum_probs=196.8
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHH
Q 014436 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231 (424)
Q Consensus 152 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~L 231 (424)
|+.+++++|+++|+++....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~L 77 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA----DAQGVFQIL 77 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHH
Confidence 6788899999999998877789999999999999999999999999999999999999999999999 999999999
Q ss_pred HhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCcccccc
Q 014436 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVD 311 (424)
Q Consensus 232 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~ 311 (424)
++.++..++..+..|.||||+|+..++.+++++|...+...+..+. .|.||||+|+..++.+++++|++.|+++ +.++
T Consensus 78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~ 155 (223)
T 2f8y_A 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGANK-DMQN 155 (223)
T ss_dssp HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcC
Confidence 9998866788899999999999999999988888887777666665 8899999999999999999999999986 7889
Q ss_pred CCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhh
Q 014436 312 NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANY 377 (424)
Q Consensus 312 ~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~ 377 (424)
..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|++.++.+++++|++ +|+..
T Consensus 156 ~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~ 217 (223)
T 2f8y_A 156 NREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR 217 (223)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence 9999999999999999999999998 88999999999999999999999999999888 67653
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-36 Score=259.05 Aligned_cols=191 Identities=20% Similarity=0.207 Sum_probs=155.5
Q ss_pred HhcCCCCcHHHHHHhCCCHHHHHHHhhcC--CCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC--CCCCCCCCCCCcH
Q 014436 136 MVNNKKNTALHDAMFPGNMEVVKILTRED--PDYPYSANDYGKTPLYMAAESESSDMVLTLLENC--TSLSHEGPNGKTA 211 (424)
Q Consensus 136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~t~ 211 (424)
..|..|.||||+|+..|+.+++++|++++ .++....+..|.||||+|+..|+.+++++|+++| ++++..+..|.||
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~ 110 (228)
T 2dzn_A 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110 (228)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCH
Confidence 36788999999999999999999999999 5544337788999999999999999999999999 8889999999999
Q ss_pred HHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcC
Q 014436 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG 291 (424)
Q Consensus 212 L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~ 291 (424)
||+|+.. ++.+++++|++.+.. ++..+. .|.||||+|+..|
T Consensus 111 L~~A~~~----~~~~~~~~Ll~~g~~-~~~~~~----------------------------------~g~t~L~~A~~~~ 151 (228)
T 2dzn_A 111 LHLAVGK----KWFEVSQFLIENGAS-VRIKDK----------------------------------FNQIPLHRAASVG 151 (228)
T ss_dssp HHHHHHT----TCHHHHHHHHHTTCC-SCCCCT----------------------------------TSCCHHHHHHHTT
T ss_pred HHHHHHc----CCHhHHHHHHHcCCC-ccccCC----------------------------------CCCCHHHHHHHcC
Confidence 9999998 999999999987655 333333 4567777777777
Q ss_pred CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhh-hCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436 292 HARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL-RNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS 370 (424)
Q Consensus 292 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll-~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL 370 (424)
+.+++++|++.|+...+.+|..|+||||+|+..++.+++++|+ +. |++++.+|..|+||||+|+.. +++++|+
T Consensus 152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~~---~~~~~l~ 225 (228)
T 2dzn_A 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALNE---QVKKFFL 225 (228)
T ss_dssp CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSST---THHHHHH
T ss_pred CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHHH---HHHHHHH
Confidence 7778888888883334778888888888888888888888888 55 788888888888888888653 4454554
Q ss_pred c
Q 014436 371 R 371 (424)
Q Consensus 371 ~ 371 (424)
+
T Consensus 226 ~ 226 (228)
T 2dzn_A 226 N 226 (228)
T ss_dssp T
T ss_pred h
Confidence 3
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.1e-36 Score=255.33 Aligned_cols=228 Identities=21% Similarity=0.196 Sum_probs=148.2
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCCcHHHHH
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG-PNGKTALHAA 215 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a 215 (424)
.|..|.|||+.|+..|+.+++++|++.|.++. ..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 45667788888888888888888888887755 566778888888888888888888888887766443 3477888888
Q ss_pred HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC-HH
Q 014436 216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH-AR 294 (424)
Q Consensus 216 ~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~-~~ 294 (424)
+.. ++.+++++|++.+.. ++..+..|.||||.|+..|+.+++++|...+...+..+. .|.||||.|+..++ .+
T Consensus 84 ~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 84 TRQ----GHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHH----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHCCSST
T ss_pred HHc----CCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC-CCCcHHHHHHHhCChHH
Confidence 877 788888888877655 355566666666666666666655555555544444433 55566666664443 55
Q ss_pred HHHHHHhhCCCccccccC-CCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcccc
Q 014436 295 TVETILSLAPECFELVDN-RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTT 373 (424)
Q Consensus 295 ~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~ 373 (424)
++++|++.|.++ +..+. .|.||||+|+..++.+++++|++. |++++.+|..|+||||+|++.++.+++++|++ +
T Consensus 158 ~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-~ 232 (240)
T 3eu9_A 158 PTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEA---GANVDAQNIKGESALDLAKQRKNVWMINHLQE-A 232 (240)
T ss_dssp THHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-H
T ss_pred HHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-h
Confidence 666666666554 33443 566666666666666666666655 55566666666666666666666666655555 3
Q ss_pred chh
Q 014436 374 HAN 376 (424)
Q Consensus 374 g~~ 376 (424)
+++
T Consensus 233 ~~~ 235 (240)
T 3eu9_A 233 RQA 235 (240)
T ss_dssp C--
T ss_pred hhc
Confidence 433
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-36 Score=266.36 Aligned_cols=230 Identities=19% Similarity=0.173 Sum_probs=203.7
Q ss_pred hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC
Q 014436 89 LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYP 168 (424)
Q Consensus 89 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 168 (424)
.++.+|..|.||||+|+..|+.++|++|+++|++++ .. +|.||||+|+..|+.+++++|+++|++++
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 89 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-----------LL--ENEFPLHQAATLEDTKIVKILLFSGLDDS 89 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-----------CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTT
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----------CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 477889999999999999999999999999998843 33 58999999999999999999999999977
Q ss_pred CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCC-CcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCC
Q 014436 169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG-KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGW 247 (424)
Q Consensus 169 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 247 (424)
..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+.. ++.+++++|++.++...+ ...|.
T Consensus 90 -~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~--~~~g~ 162 (285)
T 3kea_A 90 -QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML----NDVSIVSYFLSEIPSTFD--LAILL 162 (285)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT----TCHHHHHHHHTTSCTTCC--CSTHH
T ss_pred -CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc----CCHHHHHHHHhCCCcccc--ccCCc
Confidence 678899999999999999999999999999999999999 7999999999 999999999999876422 22899
Q ss_pred hHHHHHHhcCChhHHHHHhhccccccccccCCCchH-HHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC
Q 014436 248 TPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTA-LHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQ 326 (424)
Q Consensus 248 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~-l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 326 (424)
||||+|+..|+.+++++|...+...+..+. .|.|| ||+|+..++.+++++|++.|+++ +.++ +.|+..++
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~-~g~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~~~-------~~a~~~~~ 233 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTNNS-LLFIPDIKLAIDNKDIEMLQALFKYDINI-YSAN-------LENVLLDD 233 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTTCC-CBCCTTHHHHHHHTCHHHHHHHTTSCBCS-TTTT-------GGGGTTTC
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-------hhhhhcCC
Confidence 999999999999999999888887777666 78887 99999999999999999999987 5555 35678999
Q ss_pred ccchHHhhhCCccccccccccCCC
Q 014436 327 LQDLKPLLRNPFARILINEGDAKG 350 (424)
Q Consensus 327 ~~~~~~ll~~~~~~~~i~~~d~~g 350 (424)
.+++++|++. |++++......
T Consensus 234 ~~iv~~Ll~~---g~~~~~~~~~~ 254 (285)
T 3kea_A 234 AEIAKMIIEK---HVEYKSDSYTK 254 (285)
T ss_dssp HHHHHHHHHH---HHHHTTCTTTT
T ss_pred HHHHHHHHHc---CCCCCCccccc
Confidence 9999999998 77777655433
No 37
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-37 Score=278.01 Aligned_cols=291 Identities=12% Similarity=0.030 Sum_probs=190.5
Q ss_pred cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHH---
Q 014436 57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM--- 133 (424)
Q Consensus 57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--- 133 (424)
...+|+|.+ ..+++++|++. +..++..+..|.|+++ |+.++|+.|+++|.+...........
T Consensus 22 ~~~~~~~~~------~~dlv~~ll~~----ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~ 86 (327)
T 1sw6_A 22 RTAGPIITF------THDLTSDFLSS----PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDS 86 (327)
T ss_dssp ---CCEEEC------CTTCCCSTTTS----SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------
T ss_pred ccccchhhh------cCchHHHHhhC----CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccc
Confidence 344555543 33556665554 6666666777777765 77777777777776532210000000
Q ss_pred ---HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCc
Q 014436 134 ---IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210 (424)
Q Consensus 134 ---i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t 210 (424)
-........+.+|.|+..+..+++++|++.|.+++...+..|.||||+|+..|+.++|++|+++|++++.+|..|.|
T Consensus 87 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~T 166 (327)
T 1sw6_A 87 SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166 (327)
T ss_dssp -----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCC
T ss_pred ccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 00011112234577888888899999999999988547889999999999999999999999999999999999999
Q ss_pred HHHHHHHccccCCc---HHHHHHHHhhcCCcccccCCCCChHHHHHHh----cCChhHHHHHhhccccccccccCCCchH
Q 014436 211 ALHAAVMYFDFKGD---HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY----HGKYWINDLLEIDQTATNIADKDRKMTA 283 (424)
Q Consensus 211 ~L~~a~~~~~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~l~~~~~~~~~~~~~~~~t~ 283 (424)
|||+|+.. ++ .++++.|+......++..+..|+||||+|+. .|+.++++++............ +
T Consensus 167 pLh~A~~~----g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~--~--- 237 (327)
T 1sw6_A 167 CLVKAVKS----VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ--N--- 237 (327)
T ss_dssp HHHHHHHS----SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG--G---
T ss_pred HHHHHHHh----cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc--c---
Confidence 99999997 76 5666777776644567788888888888887 6666766666543322111000 0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCc
Q 014436 284 LHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPS 363 (424)
Q Consensus 284 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~ 363 (424)
..+...+...|.++ +.++..|.||||+|+. +++|++. +++.+|..|+||||+|+..|+.
T Consensus 238 ---------~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~ 296 (327)
T 1sw6_A 238 ---------RPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNI 296 (327)
T ss_dssp ---------CCEEEC-----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCH
T ss_pred ---------hHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCH
Confidence 00001123346675 7789999999999985 7888875 4899999999999999999999
Q ss_pred chhhhhccccchhhhhhcCCCCchhhHHhh
Q 014436 364 EFNRYMSRTTHANYQAVNDQNVSVGHIMKY 393 (424)
Q Consensus 364 ~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~ 393 (424)
+++++||+ +|++++.+|..|+||||+|+.
T Consensus 297 ~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 297 SIVDALLD-YGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHHHHHHH-TTCCTTCCCTTSCCGGGGTCC
T ss_pred HHHHHHHH-cCCCCcccCCCCCCHHHHHHh
Confidence 99999998 799999999999999999974
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.5e-35 Score=248.77 Aligned_cols=194 Identities=24% Similarity=0.287 Sum_probs=97.9
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND 173 (424)
Q Consensus 94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 173 (424)
|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++++......+.
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 90 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASAD-----------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence 45555666666666666666666655555 3344555556666666666666666666555532334455
Q ss_pred CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253 (424)
Q Consensus 174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 253 (424)
.|.||||+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.. ++..+..|.||||+|
T Consensus 91 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 165 (223)
T 2f8y_A 91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV----NNVDAAVVLLKNGAN-KDMQNNREETPLFLA 165 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCcCHHHHH
Confidence 555666666666666666666666555555555555666655555 555555555555433 233333333333333
Q ss_pred HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCC
Q 014436 254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAP 304 (424)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~ 304 (424)
+..++.+++++|...+...+..+. .|.||+++|+..++.+++++|++.|.
T Consensus 166 ~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 166 AREGSYETAKVLLDHFANRDITDH-MDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCCCCccccc-cCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 333333333333333322222222 33444444444444444444444443
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-37 Score=277.89 Aligned_cols=258 Identities=9% Similarity=0.000 Sum_probs=177.0
Q ss_pred cCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCC----
Q 014436 95 AKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS---- 170 (424)
Q Consensus 95 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~---- 170 (424)
....+|+| ....++|++|+++|++ ++..+..|.|+++ |+.+++++|+++|.+....
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~-----------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~ 80 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLK-----------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPT 80 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCC-----------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------
T ss_pred cccccchh----hhcCchHHHHhhCCcc-----------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchH
Confidence 34455555 4566789999999998 6677889999987 8999999999998664310
Q ss_pred ------------CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCC-CCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436 171 ------------ANDYGKTPLYMAAESESSDMVLTLLENCTSLSH-EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS 237 (424)
Q Consensus 171 ------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~ 237 (424)
......+..|.|+..+..++++.|++.|++++. +|..|.||||+|+.. ++.+++++|++.++.
T Consensus 81 a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~----g~~~~v~~Ll~~Gad 156 (327)
T 1sw6_A 81 SLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI----ANLELVKHLVKHGSN 156 (327)
T ss_dssp -----------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT----TCHHHHHHHHHTTCC
T ss_pred hhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc----CCHHHHHHHHHcCCC
Confidence 011112334777777888899999999999999 899999999999999 999999999999877
Q ss_pred cccccCCCCChHHHHHHhcCC---hh-HHHHHhhccccccccccCCCchHHHHHHh----cCCHHHHHHHHhhCCCcccc
Q 014436 238 LLKVTDQYGWTPIHYAAYHGK---YW-INDLLEIDQTATNIADKDRKMTALHLAAG----RGHARTVETILSLAPECFEL 309 (424)
Q Consensus 238 ~~~~~~~~~~t~l~~a~~~~~---~~-~~~~l~~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~v~~Ll~~~~~~~~~ 309 (424)
++.++..|+||||+|+..|+ .+ +..++.......+..+. .|.||||+|+. .|+.+++++|++.+.....
T Consensus 157 -~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~- 233 (327)
T 1sw6_A 157 -RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV- 233 (327)
T ss_dssp -TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-
T ss_pred -CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHh-
Confidence 58899999999999999887 44 44444444344455544 88899999998 8899999999887654311
Q ss_pred ccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhh
Q 014436 310 VDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGH 389 (424)
Q Consensus 310 ~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~ 389 (424)
......+...+.+. +++++.++..|+||||.|+. +++|+. + +++.+|..|+||||
T Consensus 234 -------------~~~~~~i~~~~~~~---g~~~~~~~~~g~t~L~~a~~------~~~Ll~-~--~~n~~d~~G~TpLh 288 (327)
T 1sw6_A 234 -------------KKQNRPIQSGTNEK---ESKPNDKNGERKDSILENLD------LKWIIA-N--MLNAQDSNGDTCLN 288 (327)
T ss_dssp -------------HGGGCCEEEC-------------------CHHHHHCS------HHHHHH-H--TTTCCCTTSCCHHH
T ss_pred -------------cccchHHHhhhhcc---cCCcccccccCCChhHHHHH------HHHHHH-h--CCCCCCCCCCCHHH
Confidence 11111222223333 88999999999999999996 778877 3 79999999999999
Q ss_pred HHhhcCchhhHHHHHH
Q 014436 390 IMKYGYPELLVINLSI 405 (424)
Q Consensus 390 ~a~~~~~~~~~~~~~~ 405 (424)
+|+.. ++..++++.+
T Consensus 289 ~A~~~-g~~~~v~~Ll 303 (327)
T 1sw6_A 289 IAARL-GNISIVDALL 303 (327)
T ss_dssp HHHHH-CCHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHH
Confidence 99864 7778887444
No 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.3e-36 Score=264.02 Aligned_cols=222 Identities=23% Similarity=0.236 Sum_probs=187.4
Q ss_pred cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436 23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH 102 (424)
Q Consensus 23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 102 (424)
..+.++|+.||..|+.++|++|++.|.+.+..+..|.||||+| +..|+.+++++|++. +..++..|..|.||||
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tpL~ 111 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVEN----GANINQPDNEGWIPLH 111 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHH
Confidence 3556899999999999999999999998888888999999999 999999999999986 7888899999999999
Q ss_pred HHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhc-C-----------------
Q 014436 103 VAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE-D----------------- 164 (424)
Q Consensus 103 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~----------------- 164 (424)
+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++.+++++++.. +
T Consensus 112 ~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 180 (299)
T 1s70_B 112 AAASCGYLDIAEYLISQGAH-----------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD 180 (299)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCC-----------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHH
Confidence 99999999999999999998 567788999999999999999999877654 2
Q ss_pred --------CCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436 165 --------PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK 236 (424)
Q Consensus 165 --------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~ 236 (424)
.......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.+.
T Consensus 181 ~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga 256 (299)
T 1s70_B 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW----GKEEACRILVENLC 256 (299)
T ss_dssp HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTC
T ss_pred HHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc----CCHHHHHHHHHcCC
Confidence 222334556788888888888888888888888888888888888888888888 88888888888876
Q ss_pred CcccccCCCCChHHHHHHhcCChhHHHHHh
Q 014436 237 SLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266 (424)
Q Consensus 237 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~ 266 (424)
+ ++..|..|.||+++|+......+.+++.
T Consensus 257 d-~~~~d~~g~t~l~~A~~~~~~~l~~l~~ 285 (299)
T 1s70_B 257 D-MEAVNKVGQTAFDVADEDILGYLEELQK 285 (299)
T ss_dssp C-TTCCCTTSCCTTTSCCSGGGHHHHHHHH
T ss_pred C-CCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6 5778888888888886543222444443
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.8e-36 Score=255.28 Aligned_cols=219 Identities=17% Similarity=0.146 Sum_probs=186.9
Q ss_pred HhcCCCCcHHHHHHhCCCHHHHHHHhhcCC----CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcH
Q 014436 136 MVNNKKNTALHDAMFPGNMEVVKILTREDP----DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211 (424)
Q Consensus 136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~ 211 (424)
.+|.+|.||||+|+..|+.+++++|++.+. +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhh-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 467899999999999999999999998876 344 678889999999999999999999999999999999999999
Q ss_pred HHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcC
Q 014436 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG 291 (424)
Q Consensus 212 L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~ 291 (424)
||+|+.. ++.+++++|+..+... ... ...... ...|.||||+|+..|
T Consensus 82 L~~A~~~----~~~~~v~~Ll~~~~~~-~~~---------------------------~~~~~~-~~~g~t~L~~A~~~~ 128 (236)
T 1ikn_D 82 LHLACEQ----GCLASVGVLTQSCTTP-HLH---------------------------SILKAT-NYNGHTCLHLASIHG 128 (236)
T ss_dssp HHHHHHH----TCHHHHHHHHHSTTTT-SSS---------------------------CGGGCC-CTTCCCHHHHHHHTT
T ss_pred HHHHHHc----CCHHHHHHHHhcccch-hHH---------------------------HHhhcc-CCCCCCHHHHHHHcC
Confidence 9999999 9999999999876542 100 001122 237889999999999
Q ss_pred CHHHHHHHHhhCCCccccccC-CCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436 292 HARTVETILSLAPECFELVDN-RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS 370 (424)
Q Consensus 292 ~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL 370 (424)
+.+++++|++.|+++ +.++. .|.||||+|+..++.+++++|++. |++++.+|..|+||||+|+..++.+++++|+
T Consensus 129 ~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 204 (236)
T 1ikn_D 129 YLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204 (236)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence 999999999999997 66776 999999999999999999999998 9999999999999999999999999999998
Q ss_pred cccchhhh--hhcCCCCchhhHHhh
Q 014436 371 RTTHANYQ--AVNDQNVSVGHIMKY 393 (424)
Q Consensus 371 ~~~g~~~~--~~~~~g~t~l~~a~~ 393 (424)
+ +|++.. .++..|+||.+.+..
T Consensus 205 ~-~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 205 Q-LTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp T-TSCGGGSSCCCCCTTTCCCCC--
T ss_pred H-cchhhhhcCCccchHHHHhhhcc
Confidence 8 899877 889999999998753
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5e-34 Score=243.14 Aligned_cols=202 Identities=19% Similarity=0.172 Sum_probs=161.4
Q ss_pred CCHHHHHHHHcCCCchhHHHHHH-HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhh-----hhhccCCC
Q 014436 25 TDPKLLKAAADGNAEPFKDMARE-VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALL-----IQVNAKGD 98 (424)
Q Consensus 25 ~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~g~ 98 (424)
+.|+||.|+..|+.++|++|++. |.+.+..+..|.||||+| +..|+.+++++|++. +..+ +..|..|.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA--ALYDNLEAAMVLMEA----APELVFEPMTSELYEGQ 76 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CchhccccccccCCCCc
Confidence 67899999999999999999997 888888889999999999 999999999999997 4333 55677999
Q ss_pred cHHHHHHHcCcHHHHHHHHHhchhcccchHH--HHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436 99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEA--ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK 176 (424)
Q Consensus 99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 176 (424)
||||+|+..|+.+++++|+++|++....... .....+..|..|.||||+|+..|+.+++++|+++|++++ ..|..|.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~ 155 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQDSLGN 155 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCC
Confidence 9999999999999999999999885421100 000001123368888888888888888888888888765 6677788
Q ss_pred cHHHHHHhcCChHHH----HHHHHhCCCC------CCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436 177 TPLYMAAESESSDMV----LTLLENCTSL------SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS 237 (424)
Q Consensus 177 t~L~~A~~~~~~~~v----~~Ll~~~~~~------~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~ 237 (424)
||||+|+..++.+++ ++|+++|+++ +.+|..|.||||+|+.. ++.+++++|+++++.
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~----g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE----GNIVMFQHLMQKRKH 222 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc----CCHHHHHHHHhcCcc
Confidence 888888888888777 8888888776 46777888888888887 888888888877654
No 43
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.3e-34 Score=231.96 Aligned_cols=159 Identities=28% Similarity=0.402 Sum_probs=132.6
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 014436 27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK 106 (424)
Q Consensus 27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~ 106 (424)
++|+.||..|+.++|+.|++.|++++..+..|.||||+| +..++.+++++|++. +.+++.+|..|.||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHHH
Confidence 468889999999999999998888888888889999998 888888888888875 77788888888899999998
Q ss_pred cCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcC
Q 014436 107 FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186 (424)
Q Consensus 107 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 186 (424)
.|+.++|++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++++ ..+..|+||||+|+..|
T Consensus 80 ~g~~~~v~~Ll~~gad-----------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g 147 (169)
T 4gpm_A 80 NGHKEVVKLLISKGAD-----------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHG 147 (169)
T ss_dssp TTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHCcCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcC
Confidence 8888999999888887 66778888899999888888889998888888866 67888888999988888
Q ss_pred ChHHHHHHHHhCCCCCC
Q 014436 187 SSDMVLTLLENCTSLSH 203 (424)
Q Consensus 187 ~~~~v~~Ll~~~~~~~~ 203 (424)
+.+++++|+++|++++.
T Consensus 148 ~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 148 NEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CHHHHHHHHTC------
T ss_pred CHHHHHHHHHCCCCcCC
Confidence 88888888888888764
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=7.5e-35 Score=248.83 Aligned_cols=216 Identities=18% Similarity=0.155 Sum_probs=157.4
Q ss_pred cCCCHHHHHHHHcCCCchhHHHHHHHHH----HhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCC
Q 014436 23 SQTDPKLLKAAADGNAEPFKDMAREVIE----SLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGD 98 (424)
Q Consensus 23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~ 98 (424)
+.+.|+||+|+..|+.+++++|++.+.. .+..+..|.||||+| +..|+.+++++|++. +..++.+|..|.
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~ 79 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLGA----GCDPELRDFRGN 79 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCSC----CCCSCCCCTTCC
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCC
Confidence 4567778888888888888888887663 346666788888888 888888888887764 666777778888
Q ss_pred cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC-CCCc
Q 014436 99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND-YGKT 177 (424)
Q Consensus 99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t 177 (424)
||||+|+..|+.+++++|++.+++...... ++..+..|.||||+|+..|+.+++++|+++|++++ ..+. .|.|
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t 153 (236)
T 1ikn_D 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSI-----LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRT 153 (236)
T ss_dssp CHHHHHHHHTCHHHHHHHHHSTTTTSSSCG-----GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhcccchhHHHH-----hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCC
Confidence 888888888888888888887764221110 34566778888888888888888888888888766 4443 7888
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcc-cccCCCCChHHHHHH
Q 014436 178 PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLL-KVTDQYGWTPIHYAA 254 (424)
Q Consensus 178 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~t~l~~a~ 254 (424)
|||+|+..|+.+++++|+++|++++.++..|.|||++|+.. ++.+++++|++.++... ..++..+.|+...+.
T Consensus 154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR----PSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS----SCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc----CchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence 88888888888888888888888888888888888888877 88888888888776532 345666666655443
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.2e-33 Score=236.34 Aligned_cols=211 Identities=18% Similarity=0.155 Sum_probs=176.7
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhhc-CCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCC-----CCCCCCCCcHHH
Q 014436 140 KKNTALHDAMFPGNMEVVKILTRE-DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL-----SHEGPNGKTALH 213 (424)
Q Consensus 140 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~~~t~L~ 213 (424)
.|.||||+|+..|+.+++++|++. |.+++ ..+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 77765 77889999999999999999999999999876 677889999999
Q ss_pred HHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCH
Q 014436 214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHA 293 (424)
Q Consensus 214 ~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~ 293 (424)
+|+.. ++.+++++|++.+... +..+.. +.+.. .....+ ..|.||||+|+..|+.
T Consensus 81 ~A~~~----~~~~~v~~Ll~~g~~~-~~~~~~--~~~~~------------------~~~~~~-~~g~t~L~~A~~~~~~ 134 (232)
T 2rfa_A 81 IAVIN----QNVNLVRALLARGASV-SARATG--SVFHY------------------RPHNLI-YYGEHPLSFAACVGSE 134 (232)
T ss_dssp HHHHT----TCHHHHHHHHHTTCCT-TCCCCS--GGGSC------------------CTTCSC-CCCSSHHHHHHHHTCH
T ss_pred HHHHc----CCHHHHHHHHhCCCCC-CcccCC--cceee------------------cccccc-cCCCCHHHHHHHcCCH
Confidence 99999 9999999999987663 443322 11110 111222 3789999999999999
Q ss_pred HHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccch----HHhhhCCcccccc------ccccCCCCcHHHHHHhcCCc
Q 014436 294 RTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDL----KPLLRNPFARILI------NEGDAKGNTPLHVFAAVRPS 363 (424)
Q Consensus 294 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~----~~ll~~~~~~~~i------~~~d~~g~t~L~~A~~~~~~ 363 (424)
+++++|++.|+++ +.+|..|+||||+|+..++.+++ ++|++. |++. +.+|..|+||||+|++.|+.
T Consensus 135 ~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~ 210 (232)
T 2rfa_A 135 EIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSY---DGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210 (232)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT---TCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc---CCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence 9999999999996 88999999999999999999988 888887 6666 68899999999999999999
Q ss_pred chhhhhccccchhhhhhcC
Q 014436 364 EFNRYMSRTTHANYQAVND 382 (424)
Q Consensus 364 ~~~~~LL~~~g~~~~~~~~ 382 (424)
+++++||+ +|.+...+..
T Consensus 211 ~~v~~Ll~-~g~~~~~~~~ 228 (232)
T 2rfa_A 211 VMFQHLMQ-KRKHIAAAHH 228 (232)
T ss_dssp HHHHHHHH-HHHHC-----
T ss_pred HHHHHHHh-cCccchhhhc
Confidence 99999998 7877665543
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.2e-33 Score=245.20 Aligned_cols=210 Identities=18% Similarity=0.192 Sum_probs=169.8
Q ss_pred ccCCCHHHHHHHHcCCCchhHHHHHHHHHHh--------hccccCCcchhhhhhhHH---hhhccHHHHHHHHHhCchh-
Q 014436 22 QSQTDPKLLKAAADGNAEPFKDMAREVIESL--------LTLQTRNTILHINIMCQD---AENASTKFVEEILEICPAL- 89 (424)
Q Consensus 22 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--------~~~~~g~t~L~~A~~~~~---~~~~~~~~l~~~~~~~~~~- 89 (424)
...+.++||.||..|+.++|+.|++.+.+.. ..+..|.||||+| +.. |+.+++++|++.....+..
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHhhccccchh
Confidence 4567899999999999999999999877543 2367899999999 876 9999999999984432211
Q ss_pred --hhh----hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC--------------CCCcHHHHHH
Q 014436 90 --LIQ----VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN--------------KKNTALHDAM 149 (424)
Q Consensus 90 --~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~--------------~g~t~L~~A~ 149 (424)
++. .|..|.||||+|+..|+.++|++|+++|++ ++..+. .|.||||+|+
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-----------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 156 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-----------VQAAANGDFFKKTKGRPGFYFGELPLSLAA 156 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------cCccccccccccccccccccCCCCHHHHHH
Confidence 222 567899999999999999999999999998 445555 7999999999
Q ss_pred hCCCHHHHHHHhh---cCCCCCCCCCCCCCcHHHHHHhcCC---------hHHHHHHHHhCCCCC-------CCCCCCCc
Q 014436 150 FPGNMEVVKILTR---EDPDYPYSANDYGKTPLYMAAESES---------SDMVLTLLENCTSLS-------HEGPNGKT 210 (424)
Q Consensus 150 ~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~~~~~t 210 (424)
..|+.+++++|++ .|++++ ..+..|+||||+|+..++ .+++++|+++|++++ .+|..|.|
T Consensus 157 ~~g~~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~T 235 (273)
T 2pnn_A 157 CTNQLAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235 (273)
T ss_dssp HTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred HcCCHHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC
Confidence 9999999999999 888876 788889999999999888 789999999998886 48899999
Q ss_pred HHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChH
Q 014436 211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTP 249 (424)
Q Consensus 211 ~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~ 249 (424)
|||+|+.. ++.+++++|++.++.+.......+.+|
T Consensus 236 pL~~A~~~----g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 236 PLALAASS----GKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHh----ChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 99999998 999999999999986656665555554
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.1e-33 Score=242.90 Aligned_cols=195 Identities=19% Similarity=0.170 Sum_probs=163.7
Q ss_pred CCHHHHHHHHcCCCchhHHHH----HHHHHHhh----ccccCCcchhhhhhhHH---hhhccHHHHHHHHHhCch---hh
Q 014436 25 TDPKLLKAAADGNAEPFKDMA----REVIESLL----TLQTRNTILHINIMCQD---AENASTKFVEEILEICPA---LL 90 (424)
Q Consensus 25 ~~~~l~~A~~~g~~~~v~~ll----~~~~~~~~----~~~~g~t~L~~A~~~~~---~~~~~~~~l~~~~~~~~~---~~ 90 (424)
+.|+||.||..|+.+.|+.|+ +.|.+.+. .+..|.||||+| +.. |+.+++++|++....... .+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA--VLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH--HHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH--HHccccchHHHHHHHHhcCCcccchhhhc
Confidence 568999999999998665555 46776665 788999999999 999 999999999998333210 01
Q ss_pred h----hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCC-------------CCcHHHHHHhCCC
Q 014436 91 I----QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK-------------KNTALHDAMFPGN 153 (424)
Q Consensus 91 ~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~-------------g~t~L~~A~~~~~ 153 (424)
+ ..|..|.||||+|+..|+.+++++|+++|++ ++..+.. |.||||+|+..|+
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~ 148 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-----------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCcccccccccccccccccCCCCHHHHHHHcCC
Confidence 1 2346799999999999999999999999998 4455554 9999999999999
Q ss_pred HHHHHHHhh---cCCCCCCCCCCCCCcHHHHHHh--cCChH-------HHHHHHHhCCCC-------CCCCCCCCcHHHH
Q 014436 154 MEVVKILTR---EDPDYPYSANDYGKTPLYMAAE--SESSD-------MVLTLLENCTSL-------SHEGPNGKTALHA 214 (424)
Q Consensus 154 ~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~~~~~-------~~~~~~~~t~L~~ 214 (424)
.+++++|++ .|++++ ..+..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|.||||+
T Consensus 149 ~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~ 227 (256)
T 2etb_A 149 WDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227 (256)
T ss_dssp HHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHH
Confidence 999999999 888876 778889999999998 77887 999999999888 8889999999999
Q ss_pred HHHccccCCcHHHHHHHHhhcCC
Q 014436 215 AVMYFDFKGDHHAMRQLFGRKKS 237 (424)
Q Consensus 215 a~~~~~~~~~~~~~~~Ll~~~~~ 237 (424)
|+.. ++.+++++|++++..
T Consensus 228 A~~~----g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 228 AAKE----GKIEIFRHILQREFS 246 (256)
T ss_dssp HHHT----TCHHHHHHHHHHHHH
T ss_pred HHHh----CCHHHHHHHHhCCCC
Confidence 9998 999999999988754
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.7e-33 Score=244.63 Aligned_cols=228 Identities=23% Similarity=0.234 Sum_probs=161.6
Q ss_pred HhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhh----hhccCCCcHHHHHHHc---CcHHHHHHHHHhchhc
Q 014436 51 SLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLI----QVNAKGDTPLHVAAKF---GHSDIVRVLIDRAKLA 123 (424)
Q Consensus 51 ~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~ 123 (424)
....+..|.|+||+| ++.|+.++++.|++.+...+..++ ..|..|.||||+|+.. |+.++|++|+++|++.
T Consensus 6 ~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -----CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred CCCCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 346677999999999 999999999999998666565554 3578999999999987 9999999999999864
Q ss_pred ccchHHHHHHHHH----hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC--------------CCCcHHHHHHhc
Q 014436 124 QDGDEAARQMIRM----VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND--------------YGKTPLYMAAES 185 (424)
Q Consensus 124 ~~~~~~~~~~i~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~ 185 (424)
... +..++. .|..|.||||+|+..|+.+++++|+++|++++ ..+. .|.||||+|+..
T Consensus 84 ~~~----~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 158 (273)
T 2pnn_A 84 DSL----KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELPLSLAACT 158 (273)
T ss_dssp TCH----HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred cch----hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCHHHHHHHc
Confidence 321 111232 56689999999999999999999999999876 4443 699999999999
Q ss_pred CChHHHHHHHH---hCCCCCCCCCCCCcHHHHHHHccccCCc---------HHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436 186 ESSDMVLTLLE---NCTSLSHEGPNGKTALHAAVMYFDFKGD---------HHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253 (424)
Q Consensus 186 ~~~~~v~~Ll~---~~~~~~~~~~~~~t~L~~a~~~~~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 253 (424)
|+.+++++|++ +|++++.+|..|.||||+|+.. ++ .+++++|+..++.. +....
T Consensus 159 g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~----~~~~~~~~~~~~~~v~~Ll~~ga~~-n~~~~--------- 224 (273)
T 2pnn_A 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV----ADNTVDNTKFVTSMYNEILILGAKL-HPTLK--------- 224 (273)
T ss_dssp TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHHHH-CTTCC---------
T ss_pred CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc----cCcchhHHHHHHHHHHHHHHhhhhc-ccccc---------
Confidence 99999999999 8999999999999999999987 65 56777777665442 21000
Q ss_pred HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcH
Q 014436 254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF 317 (424)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 317 (424)
.....+ ..|.||||+|+..|+.+++++|+++|+.........+.+|
T Consensus 225 -----------------~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 225 -----------------LEEITN-RKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp -----------------GGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred -----------------cccccC-CCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 001122 2556666666666666666666666663324344444333
No 49
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-31 Score=222.69 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=155.0
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHc
Q 014436 139 NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218 (424)
Q Consensus 139 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~ 218 (424)
..+.||||.|+..|+.+.++.|+..+.......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 46789999999999999999999988733447788899999999999999999999999999999999999999999998
Q ss_pred cccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHH
Q 014436 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298 (424)
Q Consensus 219 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~ 298 (424)
++.+++++|+......++..+. .|.||||.|+..++.+++++
T Consensus 83 ----~~~~~~~~Ll~~~~~~~~~~~~----------------------------------~g~t~L~~A~~~~~~~~v~~ 124 (201)
T 3hra_A 83 ----GRTEILAYMLKHATPDLNKHNR----------------------------------YGGNALIPAAEKGHIDNVKL 124 (201)
T ss_dssp ----TCHHHHHHHHHHSCCCTTCCCT----------------------------------TSCCSHHHHHHTTCHHHHHH
T ss_pred ----CCHHHHHHHHhccCcccccccC----------------------------------CCCcHHHHHHHcCCHHHHHH
Confidence 9999999998766544444443 45566666666677777777
Q ss_pred HHhhCCCccccccCCCCcHHHHHHHcCC-----ccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436 299 ILSLAPECFELVDNRRWNFLHYAVASFQ-----LQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR 371 (424)
Q Consensus 299 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~ 371 (424)
|++.|+...+.++..|+||||+|+..++ .+++++|++. |++++.+|..|+||||+|++.++.+++++|++
T Consensus 125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN---GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 7777733347777888888888888777 7788888887 77888888888888888888888888887776
No 50
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=7e-32 Score=224.51 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=163.9
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHHhch-hcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAK-LAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN 172 (424)
Q Consensus 94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 172 (424)
+..+.||||.|+..|+.+.++.|++.+. + ++..|..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 69 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-----------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQN 69 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCC
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence 3568899999999999999999999887 4 66788899999999999999999999999999976 788
Q ss_pred CCCCcHHHHHHhcCChHHHHHHH-HhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHH
Q 014436 173 DYGKTPLYMAAESESSDMVLTLL-ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH 251 (424)
Q Consensus 173 ~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~ 251 (424)
..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+.. ++.+++++|++.+...++..+..|.||||
T Consensus 70 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 145 (201)
T 3hra_A 70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK----GHIDNVKLLLEDGREDIDFQNDFGYTALI 145 (201)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT----TCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc----CCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence 88999999999999999999999 55579999999999999999999 99999999999985556777777777777
Q ss_pred HHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchH
Q 014436 252 YAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLK 331 (424)
Q Consensus 252 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 331 (424)
+|+..+.. ..++.+++++|++.|+++ +.+|..|+||||+|+..++.++++
T Consensus 146 ~A~~~~~~-----------------------------~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 146 EAVGLREG-----------------------------NQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHSSCC-----------------------------SHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHhccc-----------------------------hhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHH
Confidence 77766541 011256677777777665 666777777777777777777777
Q ss_pred HhhhC
Q 014436 332 PLLRN 336 (424)
Q Consensus 332 ~ll~~ 336 (424)
+|+++
T Consensus 196 ~Ll~~ 200 (201)
T 3hra_A 196 ILAQY 200 (201)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 77664
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=5.6e-33 Score=240.26 Aligned_cols=204 Identities=24% Similarity=0.194 Sum_probs=155.9
Q ss_pred cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhh----hccCCCcHHHHHHHc---CcHHHHHHHHHhchhcccchHH
Q 014436 57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAKGDTPLHVAAKF---GHSDIVRVLIDRAKLAQDGDEA 129 (424)
Q Consensus 57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~ 129 (424)
.|.||||+| +..|+.+.++.|++.+...+..++. .|..|.||||+|+.. |+.+++++|++.|++.......
T Consensus 1 ~G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 478999999 9999999887777766555778887 899999999999999 9999999999999874321100
Q ss_pred HHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCC-------------CCcHHHHHHhcCChHHHHHHHH
Q 014436 130 ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY-------------GKTPLYMAAESESSDMVLTLLE 196 (424)
Q Consensus 130 ~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~ 196 (424)
........|..|.||||+|+..|+.+++++|+++|++++ ..+.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 000001234679999999999999999999999999976 44443 9999999999999999999999
Q ss_pred ---hCCCCCCCCCCCCcHHHHHHH--ccccCCcHH-------HHHHHHhhcCCcc------cccCCCCChHHHHHHhcCC
Q 014436 197 ---NCTSLSHEGPNGKTALHAAVM--YFDFKGDHH-------AMRQLFGRKKSLL------KVTDQYGWTPIHYAAYHGK 258 (424)
Q Consensus 197 ---~~~~~~~~~~~~~t~L~~a~~--~~~~~~~~~-------~~~~Ll~~~~~~~------~~~~~~~~t~l~~a~~~~~ 258 (424)
+|++++.+|..|.||||+|+. . ++.+ ++++|++.++... +.+|..|.||||+|+..|+
T Consensus 158 ~~~~ga~~n~~d~~g~TpLh~A~~~~~----~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 158 NPHQPASLEATDSLGNTVLHALVMIAD----NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred ccccCCCcCccCCCCCCHHHHHHHccc----CCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 899999999999999999998 5 7777 7888887765421 3344444444444444444
Q ss_pred hhHHHHHhh
Q 014436 259 YWINDLLEI 267 (424)
Q Consensus 259 ~~~~~~l~~ 267 (424)
.+++++|.+
T Consensus 234 ~~~v~~Ll~ 242 (256)
T 2etb_A 234 IEIFRHILQ 242 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444433
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=9.7e-32 Score=215.21 Aligned_cols=155 Identities=27% Similarity=0.365 Sum_probs=89.9
Q ss_pred chhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCC
Q 014436 61 ILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK 140 (424)
Q Consensus 61 ~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~ 140 (424)
.|+.| ++.|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+++|++ ++.+|.+
T Consensus 7 ~L~~A--a~~G~~~~v~~Ll~~----Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----------~~~~d~~ 69 (169)
T 4gpm_A 7 RLIEA--AENGNKDRVKDLIEN----GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----------VNAKDSD 69 (169)
T ss_dssp HHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTT
T ss_pred HHHHH--HHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----------hhhhccC
Confidence 35555 666666666665553 555555566666666666666666666666666555 4445555
Q ss_pred CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccc
Q 014436 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD 220 (424)
Q Consensus 141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~ 220 (424)
|.||||+|+..|+.+++++|+++|++++ .++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..
T Consensus 70 g~TpLh~A~~~g~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-- 146 (169)
T 4gpm_A 70 GRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH-- 146 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--
Confidence 6666666666666666666666665544 4555566666666666666666666666666666666666666666655
Q ss_pred cCCcHHHHHHHHhhcCC
Q 014436 221 FKGDHHAMRQLFGRKKS 237 (424)
Q Consensus 221 ~~~~~~~~~~Ll~~~~~ 237 (424)
++.+++++|++.|+.
T Consensus 147 --g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 147 --GNEEVVKLLEKQGGW 161 (169)
T ss_dssp --TCHHHHHHHHTC---
T ss_pred --CCHHHHHHHHHCCCC
Confidence 556666666655544
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.1e-32 Score=237.28 Aligned_cols=196 Identities=18% Similarity=0.209 Sum_probs=165.2
Q ss_pred CCCHHHHHHHHcCCCchhHHHHH----HHHHHhhcc----ccCCcchhhhhhh---HHhhhccHHHHHHHHHhCch----
Q 014436 24 QTDPKLLKAAADGNAEPFKDMAR----EVIESLLTL----QTRNTILHINIMC---QDAENASTKFVEEILEICPA---- 88 (424)
Q Consensus 24 ~~~~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~t~L~~A~~~---~~~~~~~~~~l~~~~~~~~~---- 88 (424)
.+.++||.||..|+.+.|+.|++ .|.+....+ ..|.||||+| + +.|+.+++++|++.......
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 35688999999999998888887 565544333 5699999999 7 78999999999998543221
Q ss_pred ---hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhc--------------CCCCcHHHHHHhC
Q 014436 89 ---LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN--------------NKKNTALHDAMFP 151 (424)
Q Consensus 89 ---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~--------------~~g~t~L~~A~~~ 151 (424)
..+..|..|.||||+|+..|+.++|++|+++|++ ++..+ ..|.||||+|+..
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 150 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-----------VHAQARGRFFQPKDEGGYFYFGELPLSLAACT 150 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-----------cCccccccccCcccccccccCCCCHHHHHHHc
Confidence 2234455899999999999999999999999998 45555 5799999999999
Q ss_pred CCHHHHHHHhh---cCCCCCCCCCCCCCcHHHHHHhcCC---------hHHHHHHHHhCCCC-------CCCCCCCCcHH
Q 014436 152 GNMEVVKILTR---EDPDYPYSANDYGKTPLYMAAESES---------SDMVLTLLENCTSL-------SHEGPNGKTAL 212 (424)
Q Consensus 152 ~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~-------~~~~~~~~t~L 212 (424)
|+.+++++|++ .|++++ ..+..|+||||+|+..++ .+++++|+++|+++ +.+|..|.|||
T Consensus 151 g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL 229 (260)
T 3jxi_A 151 NQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229 (260)
T ss_dssp TCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred CCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence 99999999999 888876 778889999999998777 68999999999887 67889999999
Q ss_pred HHHHHccccCCcHHHHHHHHhhcCC
Q 014436 213 HAAVMYFDFKGDHHAMRQLFGRKKS 237 (424)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~Ll~~~~~ 237 (424)
|+|+.. ++.+++++|+++++.
T Consensus 230 ~~A~~~----g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 230 MMAAKT----GKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHT----TCHHHHHHHHHHHHH
T ss_pred HHHHHc----CCHHHHHHHHHhCCC
Confidence 999998 999999999998765
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.9e-32 Score=236.42 Aligned_cols=207 Identities=24% Similarity=0.244 Sum_probs=157.5
Q ss_pred ccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhc----cCCCcHHHHHH---HcCcHHHHHHHHHhchhcccchH
Q 014436 56 QTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVN----AKGDTPLHVAA---KFGHSDIVRVLIDRAKLAQDGDE 128 (424)
Q Consensus 56 ~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~ 128 (424)
..+.++||.| ++.|+.+.++.|++.+...+..++..+ ..|.||||+|+ ..|+.+++++|++.|++......
T Consensus 3 ~~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 3 VFNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 4688999999 999999998888886665566676555 67999999999 77999999999999987432211
Q ss_pred HHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC--------------CCCCcHHHHHHhcCChHHHHHH
Q 014436 129 AARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN--------------DYGKTPLYMAAESESSDMVLTL 194 (424)
Q Consensus 129 ~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~L 194 (424)
.....++..|..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 1111122344589999999999999999999999999977 444 5799999999999999999999
Q ss_pred HH---hCCCCCCCCCCCCcHHHHHHHccccCCc---------HHHHHHHHhhcCCcc------cccCCCCChHHHHHHhc
Q 014436 195 LE---NCTSLSHEGPNGKTALHAAVMYFDFKGD---------HHAMRQLFGRKKSLL------KVTDQYGWTPIHYAAYH 256 (424)
Q Consensus 195 l~---~~~~~~~~~~~~~t~L~~a~~~~~~~~~---------~~~~~~Ll~~~~~~~------~~~~~~~~t~l~~a~~~ 256 (424)
++ +|++++.+|..|.||||+|+.. ++ .+++++|++.++... +..+..|.||||+|+..
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~A~~~----~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHALVAI----ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHH----CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HhccccCCCCcccCCCCCcHHHHHHHh----ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence 99 8999999999999999999987 55 577888887765421 23444555555555555
Q ss_pred CChhHHHHHhhcc
Q 014436 257 GKYWINDLLEIDQ 269 (424)
Q Consensus 257 ~~~~~~~~l~~~~ 269 (424)
|+.+++++|.+++
T Consensus 236 g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 236 GKIGIFQHIIRRE 248 (260)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhC
Confidence 5444444444333
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=230.15 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=175.0
Q ss_pred ccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhch-hcccchHHHHHHH
Q 014436 56 QTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAK-LAQDGDEAARQMI 134 (424)
Q Consensus 56 ~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~i 134 (424)
..+.+++|.| +..++.+.++.+++... ...++..|..|.||||+|+..|+.++|++|++.|+ + +
T Consensus 74 ~~~~~~l~~a--~~~~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~-----------~ 138 (276)
T 4hbd_A 74 LACRSDAHPE--LVRRHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-----------V 138 (276)
T ss_dssp HHHSTTCCHH--HHHHHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC-----------T
T ss_pred HHhccCCCHH--HHHHHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-----------C
Confidence 3577999999 99999999999988643 23478899999999999999999999999999998 5 6
Q ss_pred HHhcCCCCcHHHHHH-----hCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCC
Q 014436 135 RMVNNKKNTALHDAM-----FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209 (424)
Q Consensus 135 ~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 209 (424)
+..+..|.||||+|+ ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 139 ~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~ 217 (276)
T 4hbd_A 139 DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS 217 (276)
T ss_dssp TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 778899999999999 5688999999999997755 7788899999999999999999999999999999999999
Q ss_pred cHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccc
Q 014436 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQT 270 (424)
Q Consensus 210 t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~ 270 (424)
||||+|+.. ++.+++++|+...+.+++..|..|.|||++|+..|+.+++++|.....
T Consensus 218 TpLh~A~~~----g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 218 TALMCACEH----GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp CHHHHHHHH----TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred CHHHHHHHC----CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 999999999 999999999994444468999999999999999999999888876654
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=3e-33 Score=252.14 Aligned_cols=283 Identities=13% Similarity=0.051 Sum_probs=184.1
Q ss_pred CcchhhhhhhH-HhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh
Q 014436 59 NTILHINIMCQ-DAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV 137 (424)
Q Consensus 59 ~t~L~~A~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~ 137 (424)
.+++++| .. .++.+.++++.+. +.++.||||+|+..|+.++|++|+++|+.... ....
T Consensus 66 ll~~~~a--~~~~~~~~~~~~l~~~-----------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~--------~~~~ 124 (376)
T 2aja_A 66 LLCLYYA--HYNRNAKQLWSDAHKK-----------GIKSEVICFVAAITGCSSALDTLCLLLTSDEI--------VKVI 124 (376)
T ss_dssp HHHHHHH--HTTTTCTTHHHHHHHH-----------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS--------CC--
T ss_pred HHHHHHH--HhcCCCHHHHHHHHHc-----------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH--------HHHh
Confidence 3556665 44 4666777777664 34556999999999999999999998872110 0122
Q ss_pred cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC--CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCC--CCCCCCcHHH
Q 014436 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYP--YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSH--EGPNGKTALH 213 (424)
Q Consensus 138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~t~L~ 213 (424)
+..|.||||+|+..|+.+++++|+++|++.. ...+.+ .||||+|+..|+.++|++|+++|++++. .+..|.||||
T Consensus 125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~ 203 (376)
T 2aja_A 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203 (376)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHH
Confidence 3345689999999999999999999986421 012222 8999999999999999999999988776 7778899999
Q ss_pred HHH-HccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC
Q 014436 214 AAV-MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH 292 (424)
Q Consensus 214 ~a~-~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~ 292 (424)
+|+ .. |+.+++++|++.++ .|.||++.|+..|+.+++++|...+...+..+ ++++.|+..|+
T Consensus 204 ~Aa~~~----G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~-----~~l~~A~~~g~ 266 (376)
T 2aja_A 204 WAAVGR----GHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH-----DAFKLSNPDGV 266 (376)
T ss_dssp HHHSTT----CCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH-----TTTTTTSSSSC
T ss_pred HHHHHC----CCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccccccc-----HHHHHHHHCCC
Confidence 999 88 99999999998552 27789999999998888888887766543322 36677777776
Q ss_pred HHH------------HHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhc
Q 014436 293 ART------------VETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV 360 (424)
Q Consensus 293 ~~~------------v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~ 360 (424)
.++ ++.++..+.. +.+..+-.-.+.+.++.++.. |+++ ..+.||||+|+..
T Consensus 267 ~~vv~~~~~~~~~~~~~~li~~~~~----------~~~~~~~~Ll~~~~vk~l~~~---g~~~----n~~~~~L~~A~~~ 329 (376)
T 2aja_A 267 FDLVTKSECLQGFYMLRNLIRRNDE----------VLLDDIRFLLSIPGIKALAPT---ATIP----GDANELLRLALRL 329 (376)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHCCG----------GGHHHHHHHHTSTTTGGGSSC---CSST----TCCCHHHHHHHHH
T ss_pred hhhhcHHhhhhhHHHHHHHHHcchh----------hHHHHHHHHHhChhhhhhhcc---CCCC----CCccHHHHHHHHc
Confidence 553 3445554421 111111111122233333333 4433 3567999999999
Q ss_pred CCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHH
Q 014436 361 RPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVIN 402 (424)
Q Consensus 361 ~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 402 (424)
|+.++++.|+. .| ..++..|+|++.+|..+ ++.++..
T Consensus 330 g~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~-~~~~~~~ 366 (376)
T 2aja_A 330 GNQGACALLLS-IP---SVLALTKANNYYINETG-GRLDLRA 366 (376)
T ss_dssp TCTTHHHHHTT-SH---HHHHSCC------------------
T ss_pred CcHHHHHHHHc-Ch---HHHHHHHHhcccccccc-ccccHHH
Confidence 99999999997 43 78899999999998754 6666654
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=5.7e-30 Score=211.16 Aligned_cols=161 Identities=21% Similarity=0.211 Sum_probs=109.7
Q ss_pred hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHH
Q 014436 53 LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQ 132 (424)
Q Consensus 53 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 132 (424)
..+..|.||||+| +..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 30 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 93 (192)
T 2rfm_A 30 YRDSYNRTPLMVA--CMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---------- 93 (192)
T ss_dssp CCCTTCCCHHHHH--HHHTCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC----------
T ss_pred CcCCCCCCHHHHH--HHcCCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC----------
Confidence 4566677777777 777777777777665 445556666677777777777777777777777665
Q ss_pred HHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHH
Q 014436 133 MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212 (424)
Q Consensus 133 ~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L 212 (424)
++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 94 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 171 (192)
T 2rfm_A 94 -VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE 171 (192)
T ss_dssp -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred -CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 44556667777777777777777777777766654 5566677777777777777777777777777777777777777
Q ss_pred HHHHHccccCCcHHHHHHHHhhc
Q 014436 213 HAAVMYFDFKGDHHAMRQLFGRK 235 (424)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~Ll~~~ 235 (424)
++|+.. ++.+++++|++.+
T Consensus 172 ~~A~~~----~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 172 ASARIF----GRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHT----TCHHHHHHHHHHH
T ss_pred HHHHHh----CcHHHHHHHHhcc
Confidence 777766 6777777666543
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5e-31 Score=213.52 Aligned_cols=170 Identities=23% Similarity=0.243 Sum_probs=125.0
Q ss_pred CCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh
Q 014436 58 RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV 137 (424)
Q Consensus 58 g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~ 137 (424)
+.+|||+| +..|+.++++++++. .+..++..|..|.||||+|+..|+.+++++|+++|++ ++..
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~~ 65 (172)
T 3v30_A 2 DSLSIHQL--AAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----------PHIL 65 (172)
T ss_dssp --CCHHHH--HHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----------TTCC
T ss_pred chhhHHHH--HHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------chhh
Confidence 45777888 777777777777664 3444677777888888888888888888888888777 5566
Q ss_pred cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHH
Q 014436 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217 (424)
Q Consensus 138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~ 217 (424)
+..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus 66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 144 (172)
T 3v30_A 66 AKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144 (172)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 7778888888888888888888888887765 667778888888888888888888888888888888888888888888
Q ss_pred ccccCCcHHHHHHHHhhcCCcccccCCCCChH
Q 014436 218 YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTP 249 (424)
Q Consensus 218 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~ 249 (424)
. ++.+++++|++.+... ...+..+.||
T Consensus 145 ~----~~~~~~~~L~~~~~~~-~~~~~~~~~p 171 (172)
T 3v30_A 145 L----GYRKVQQVIENHILKL-FQSNLVPADP 171 (172)
T ss_dssp H----TCHHHHHHHHHHHHHH-SCC-------
T ss_pred h----CcHHHHHHHHHHHHHH-hcccCCCCCC
Confidence 7 8888888888777653 4555555554
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=221.16 Aligned_cols=194 Identities=23% Similarity=0.251 Sum_probs=174.9
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG 175 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 175 (424)
.+.+++|.|+..|+.+.++.+++.+.+. .++..|..|.||||+|+..|+.+++++|++.|+......+..|
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~---------~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g 145 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDY---------VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG 145 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHH---------HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTS
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhh---------cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCC
Confidence 3568899999999999999999987652 2778899999999999999999999999999983344889999
Q ss_pred CcHHHHHH-----hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHH
Q 014436 176 KTPLYMAA-----ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPI 250 (424)
Q Consensus 176 ~t~L~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l 250 (424)
.||||+|+ ..++.+++++|++.|.+.+..+..|.||||+|+.. ++.+++++|++.+++ ++.+|..|.|||
T Consensus 146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~----g~~~~v~~Ll~~gad-~n~~d~~G~TpL 220 (276)
T 4hbd_A 146 YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH----GRVDVVKALLACEAD-VNVQDDDGSTAL 220 (276)
T ss_dssp CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc----CCHHHHHHHHhCCCC-CCCCCCCCCCHH
Confidence 99999999 66889999999999999999999999999999999 999999999999877 588999999999
Q ss_pred HHHHhcCChhHHHHHhh-ccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCC
Q 014436 251 HYAAYHGKYWINDLLEI-DQTATNIADKDRKMTALHLAAGRGHARTVETILSLAP 304 (424)
Q Consensus 251 ~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~ 304 (424)
|+|+..|+.+++++|.. .+...+..+. .|.||||+|+..|+.+++++|++++.
T Consensus 221 h~A~~~g~~~iv~~Ll~~~gad~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 221 MCACEHGHKEIAGLLLAVPSCDISLTDR-DGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCCCcCcCC-CCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 99999999999998887 6766666665 89999999999999999999998764
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=6.8e-31 Score=210.56 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436 24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV 103 (424)
Q Consensus 24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~ 103 (424)
...++|+.|+..|+.+++++|++.|.+.+..+..|.||||+| +. |+.+++++|++. +..++.++..|.||||+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~ 76 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLLR----GANPDLKDRTGFAVIHD 76 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence 455778888888888888888887777767777788888888 77 888888888775 66677777788888888
Q ss_pred HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHH
Q 014436 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA 183 (424)
Q Consensus 104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 183 (424)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++.....+..|.||||+|+
T Consensus 77 A~~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 77 AARAGFLDTLQTLLEFQAD-----------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145 (162)
T ss_dssp HHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence 8888888888888888776 55667788888888888888888888888887754467777888888888
Q ss_pred hcCChHHHHHHHHhCCC
Q 014436 184 ESESSDMVLTLLENCTS 200 (424)
Q Consensus 184 ~~~~~~~v~~Ll~~~~~ 200 (424)
..|+.+++++|+++|++
T Consensus 146 ~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCHHHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHhCCC
Confidence 88888888888888764
No 61
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=9.1e-30 Score=206.06 Aligned_cols=167 Identities=19% Similarity=0.157 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHH-HhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 014436 27 PKLLKAAADGNAEPFKDMAREVIE-SLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAA 105 (424)
Q Consensus 27 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~ 105 (424)
++||.||..|+.+.+++|++.+.+ ....+..|.||||+| +..|+.+++++|++. +..++..+..|.||||+|+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~ 77 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLEW----GADPHILAKERESALSLAS 77 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHHH
Confidence 456666666666666666665554 234555666666666 666666666666654 4555555666666666666
Q ss_pred HcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhc
Q 014436 106 KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES 185 (424)
Q Consensus 106 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 185 (424)
..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..
T Consensus 78 ~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~ 145 (172)
T 3v30_A 78 TGGYTDIVGLLLERDVD-----------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVAL 145 (172)
T ss_dssp HTTCHHHHHHHHTTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHh
Confidence 66666666666666655 44555566666666666666666666666666644 4555566666666666
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCcH
Q 014436 186 ESSDMVLTLLENCTSLSHEGPNGKTA 211 (424)
Q Consensus 186 ~~~~~v~~Ll~~~~~~~~~~~~~~t~ 211 (424)
++.+++++|+++++++...+..+.||
T Consensus 146 ~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 146 GYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp TCHHHHHHHHHHHHHHSCC-------
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 66666666666665555555544443
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.8e-29 Score=207.06 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=149.1
Q ss_pred hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC
Q 014436 89 LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYP 168 (424)
Q Consensus 89 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 168 (424)
.++.+|..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 95 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-----------LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----------cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 4566899999999999999999999999999987 56778899999999999999999999999999976
Q ss_pred CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCCh
Q 014436 169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT 248 (424)
Q Consensus 169 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t 248 (424)
..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.+.. ++..+..|.|
T Consensus 96 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t 169 (192)
T 2rfm_A 96 -TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY----GRSEIVKKLLELGAD-ISARDLTGLT 169 (192)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCC-TTCBCTTSCB
T ss_pred -CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence 7788899999999999999999999999999999999999999999999 999999999998776 5788888889
Q ss_pred HHHHHHhcCChhHHHHHhhc
Q 014436 249 PIHYAAYHGKYWINDLLEID 268 (424)
Q Consensus 249 ~l~~a~~~~~~~~~~~l~~~ 268 (424)
|+++|+..|+.+++++|.+.
T Consensus 170 ~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 170 AEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHhc
Confidence 99999888888887777654
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.8e-29 Score=203.20 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=115.6
Q ss_pred cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436 57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136 (424)
Q Consensus 57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~ 136 (424)
.|.||||+| +..|+.+++++|++. +..++..|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 2 ~~~t~L~~A--~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~ 64 (167)
T 3v31_A 2 ANSLSVHQL--AAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----------PQL 64 (167)
T ss_dssp TTCCCHHHH--HHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred CCcchHHHH--HHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----------CCC
Confidence 466777777 777777777777765 455666777777777777777777777777777766 445
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~ 216 (424)
.+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 143 (167)
T 3v31_A 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143 (167)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 66677777777777777777777777777755 56666777777777777777777777777777777777777777777
Q ss_pred HccccCCcHHHHHHHHhhcCC
Q 014436 217 MYFDFKGDHHAMRQLFGRKKS 237 (424)
Q Consensus 217 ~~~~~~~~~~~~~~Ll~~~~~ 237 (424)
.. ++.+++++|++....
T Consensus 144 ~~----~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 144 AL----GYRSVQQVIESHLLK 160 (167)
T ss_dssp HH----TCHHHHHHHHHHHHH
T ss_pred Hc----CcHHHHHHHHHHHHH
Confidence 77 777777777766543
No 64
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=3.2e-32 Score=245.42 Aligned_cols=294 Identities=14% Similarity=0.049 Sum_probs=196.6
Q ss_pred HHHHHHHH-cCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 014436 27 PKLLKAAA-DGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAA 105 (424)
Q Consensus 27 ~~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~ 105 (424)
..+++|.. .++.+.++++++.|. ++.||||+| ++.|+.+++++|++.... ....+..+..|.||||+|+
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~-------~~~T~Lh~A--a~~G~~e~v~~Ll~~ga~-~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGI-------KSEVICFVA--AITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTC-------CHHHHHHHH--HHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCC-------CcCCHHHHH--HHcCCHHHHHHHHHcCCc-HHHHHHhccCCCCHHHHHH
Confidence 35777776 578999999998765 445999999 999999999999886221 1112234556789999999
Q ss_pred HcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC-CCCCCCCcHHHHHH-
Q 014436 106 KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY-SANDYGKTPLYMAA- 183 (424)
Q Consensus 106 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A~- 183 (424)
..|+.++|++|+++|++.... .++..+ .||||+|+..|+.+++++|+++|+++.. ..+..|.||||+|+
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~------~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~ 207 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMA------MIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHH------HHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHhCCCCcccc------ccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH
Confidence 999999999999999642100 022233 8999999999999999999999998552 16677999999999
Q ss_pred hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHH
Q 014436 184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263 (424)
Q Consensus 184 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 263 (424)
.+|+.++|++|+++|+ .|.|||++|+.. |+.+++++|++.++.. +..+ ++++.|+..|+.+++.
T Consensus 208 ~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~----g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 208 GRGHHNVINFLLDCPV-------MLAYAEIHEFEY----GEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVT 271 (376)
T ss_dssp TTCCHHHHHHHTTSHH-------HHHHHHHCTTTT----TTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSS
T ss_pred HCCCHHHHHHHHhCCC-------ccchHHHHHHHC----CCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhc
Confidence 9999999999999774 288999999999 9999999999987653 3332 4677788888766322
Q ss_pred HHhhccccccccccCCCchHHHHHH---hcCCHHHHHHHHhhCCCc----cccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436 264 LLEIDQTATNIADKDRKMTALHLAA---GRGHARTVETILSLAPEC----FELVDNRRWNFLHYAVASFQLQDLKPLLRN 336 (424)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~t~l~~a~---~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~ 336 (424)
...... +...+...+ ..+..+.+++|++.+... .......+.||||+|+..|+.+++++|++.
T Consensus 272 ~~~~~~----------~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~ 341 (376)
T 2aja_A 272 KSECLQ----------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 341 (376)
T ss_dssp HHHHHH----------HHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred HHhhhh----------hHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC
Confidence 110000 000011111 123456777777643210 011234567899999999999999999987
Q ss_pred CccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436 337 PFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR 371 (424)
Q Consensus 337 ~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~ 371 (424)
...++..|+|++.+|-..|..++.+.-++
T Consensus 342 ------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 342 ------PSVLALTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp ------HHHHHSCC---------------------
T ss_pred ------hHHHHHHHHhccccccccccccHHHHHHH
Confidence 26677899999999999999998865444
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=4.9e-30 Score=206.84 Aligned_cols=156 Identities=26% Similarity=0.315 Sum_probs=104.9
Q ss_pred cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436 57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136 (424)
Q Consensus 57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~ 136 (424)
.+.++|++| ++.|+.+++++|++. +..++..|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 13 ~~~~~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~ 75 (169)
T 2y1l_E 13 DLGKKLLEA--ARAGRDDEVRILMAN----GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-----------VNA 75 (169)
T ss_dssp CHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred cccchHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCc
Confidence 455666666 666666666666664 455556666667777777777777777777776665 445
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~ 216 (424)
.|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus 76 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 154 (169)
T 2y1l_E 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 56666777777777777777777777766654 55666777777777777777777777777777766777777777777
Q ss_pred HccccCCcHHHHHHHHhh
Q 014436 217 MYFDFKGDHHAMRQLFGR 234 (424)
Q Consensus 217 ~~~~~~~~~~~~~~Ll~~ 234 (424)
.. ++.+++++|++.
T Consensus 155 ~~----~~~~~~~~L~~~ 168 (169)
T 2y1l_E 155 DN----GNEDLAEILQKL 168 (169)
T ss_dssp HT----TCHHHHHHHHTC
T ss_pred Hh----CCHHHHHHHHHc
Confidence 66 677777766654
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=6.8e-29 Score=200.15 Aligned_cols=155 Identities=26% Similarity=0.392 Sum_probs=88.3
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG 175 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 175 (424)
.+.+||+.|+..|+.++|++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|.+++ ..+..|
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g 80 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGAD-----------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAG 80 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCC
Confidence 344555666666666666666655555 33445555566666665556666666655555544 445555
Q ss_pred CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436 176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255 (424)
Q Consensus 176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 255 (424)
.||||+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++..+..|.||+++|+.
T Consensus 81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 155 (169)
T 2y1l_E 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF----GHLEIVEVLLKNGAD-VNAQDKFGKTAFDISID 155 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 5666666655556666666665555555555555666665555 555555555555544 35555555566666655
Q ss_pred cCChhHHHHHhh
Q 014436 256 HGKYWINDLLEI 267 (424)
Q Consensus 256 ~~~~~~~~~l~~ 267 (424)
.++.+++++|.+
T Consensus 156 ~~~~~~~~~L~~ 167 (169)
T 2y1l_E 156 NGNEDLAEILQK 167 (169)
T ss_dssp TTCHHHHHHHHT
T ss_pred hCCHHHHHHHHH
Confidence 555555555543
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=3e-28 Score=196.07 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=136.0
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG 175 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 175 (424)
.|.||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g 69 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-----------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGR 69 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-----------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCC
Confidence 578999999999999999999999877 66778899999999999999999999999988866 677889
Q ss_pred CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436 176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255 (424)
Q Consensus 176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 255 (424)
.||||+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.. ++..+..|.||+++|+.
T Consensus 70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG----NHVKCVKMLLESGAD-PTIETDSGYNSMDLAVA 144 (167)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999998 999999999987766 46777778888888888
Q ss_pred cCChhHHHHHhhcc
Q 014436 256 HGKYWINDLLEIDQ 269 (424)
Q Consensus 256 ~~~~~~~~~l~~~~ 269 (424)
.|+.+++++|....
T Consensus 145 ~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 145 LGYRSVQQVIESHL 158 (167)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHH
Confidence 88777777766544
No 68
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.8e-28 Score=196.44 Aligned_cols=157 Identities=22% Similarity=0.183 Sum_probs=130.2
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG 175 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 175 (424)
...||||.|+..|+.+++++|+++|.+ ++..+..|.||||+|+. |+.+++++|+++|++++ ..+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-----------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g 70 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-----------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTG 70 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-----------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-----------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCC
Confidence 456899999999999999999998887 56678889999999988 99999999999998866 678889
Q ss_pred CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436 176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255 (424)
Q Consensus 176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 255 (424)
.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.++..++..+..|.|||++|+.
T Consensus 71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~ 146 (162)
T 1ihb_A 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE----GHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146 (162)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999998 899999999988877556666666666666666
Q ss_pred cCChhHHHHHhhcc
Q 014436 256 HGKYWINDLLEIDQ 269 (424)
Q Consensus 256 ~~~~~~~~~l~~~~ 269 (424)
.|+.+++++|.+.+
T Consensus 147 ~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 147 YGRNEVVSLMQANG 160 (162)
T ss_dssp TTCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHhC
Confidence 66666555555443
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.9e-32 Score=229.72 Aligned_cols=198 Identities=17% Similarity=0.029 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHh---hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHH
Q 014436 41 FKDMAREVIESL---LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117 (424)
Q Consensus 41 v~~ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 117 (424)
++.|++.|.++. ..+..+.||||+| +..|+.+++++|++. +..++.+|..|.||||+|+..|+.+++++|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 74 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDA--ALTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVDFLI 74 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHH--HHHTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHH--HHcCCHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 456777777654 2334566778888 888888888888775 5667777888888888888888888888888
Q ss_pred HhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH--HhcCChHHHHHHH
Q 014436 118 DRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA--AESESSDMVLTLL 195 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll 195 (424)
++|++ ++..|..|.||||+|+..|+.+++++|++.|++++...+..|.||||+| +..++.+++++|+
T Consensus 75 ~~ga~-----------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll 143 (229)
T 2vge_A 75 TAGAN-----------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143 (229)
T ss_dssp HTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHH
T ss_pred HCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHH
Confidence 88877 5567778888888888888888888888888887644456788888888 7788888888888
Q ss_pred HhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc-ccccCCCCChHHHHHHhcCChhHH
Q 014436 196 ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL-LKVTDQYGWTPIHYAAYHGKYWIN 262 (424)
Q Consensus 196 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~ 262 (424)
+.|++++..+..+.++++.++.. .. .+.|+..+... ++.+|..|+||||+|+..|+.+++
T Consensus 144 ~~ga~~~~~~~~~~~~l~~~~~~----~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v 204 (229)
T 2vge_A 144 DVEQSMGLMNSGAVYALWDYSAE----FG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204 (229)
T ss_dssp HHHHHTTTSGGGEEEESSCBCCS----ST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred HcCCCcccccCCchHHHHHHhhc----cc---cccCccccccccccccCCCcccHHHHHHHcCCccee
Confidence 88888887777777777754433 21 13444444431 456677788888888877776633
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-30 Score=220.67 Aligned_cols=203 Identities=18% Similarity=0.101 Sum_probs=136.1
Q ss_pred HHHHhhcCCCCC--CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhh
Q 014436 157 VKILTREDPDYP--YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234 (424)
Q Consensus 157 v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~ 234 (424)
++.|++++.+.. ...+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. ++.+++++|++.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~----g~~~~v~~Ll~~ 76 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG----ANYSIVDFLITA 76 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHC
Confidence 356777776643 23345667788899999999999999999988888888899999999988 888899988888
Q ss_pred cCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHH--HhcCCHHHHHHHHhhCCCccccccC
Q 014436 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLA--AGRGHARTVETILSLAPECFELVDN 312 (424)
Q Consensus 235 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~v~~Ll~~~~~~~~~~~~ 312 (424)
+.+ ++..|..|.||||+|+..|+.+++++|...+...+..+...|.||||+| +..++.+++++|++.|+++ +.++.
T Consensus 77 ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~ 154 (229)
T 2vge_A 77 GAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNS 154 (229)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGG
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccC
Confidence 765 4667777777777777777666666666666555555444667777777 6777777777777777665 55666
Q ss_pred CCCcHHHHHHHcCCccchHHhhhCCccccc--cccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436 313 RRWNFLHYAVASFQLQDLKPLLRNPFARIL--INEGDAKGNTPLHVFAAVRPSEFNRYMSR 371 (424)
Q Consensus 313 ~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~--i~~~d~~g~t~L~~A~~~~~~~~~~~LL~ 371 (424)
.|.|+++.++..... +.|++. |++ ++.+|..|+||||+|+..|+.++++.++.
T Consensus 155 ~~~~~l~~~~~~~~~---~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 155 GAVYALWDYSAEFGD---ELSFRE---GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp GEEEESSCBCCSSTT---BCCBCT---TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred CchHHHHHHhhcccc---ccCccc---cccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 666666644333222 344444 444 66667777777777777777777765443
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2.8e-28 Score=193.18 Aligned_cols=121 Identities=23% Similarity=0.314 Sum_probs=55.5
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND 173 (424)
Q Consensus 94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 173 (424)
+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus 31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~ 98 (153)
T 1awc_B 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVS-----------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDM 98 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCC
Confidence 33444444444444444444444444443 23334444444444444444444444444444433 3344
Q ss_pred CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHH
Q 014436 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230 (424)
Q Consensus 174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~ 230 (424)
.|.||||+|+..++.+++++|+++|++++.++..|.|||++|+.. ++.+++++
T Consensus 99 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~i~~~ 151 (153)
T 1awc_B 99 LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN----GNEDLAEI 151 (153)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc----CCHHHHHH
Confidence 444444444444444444444444444444444444444444444 44444443
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=3.7e-28 Score=197.87 Aligned_cols=161 Identities=22% Similarity=0.232 Sum_probs=124.1
Q ss_pred cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436 57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136 (424)
Q Consensus 57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~ 136 (424)
.+.++||.| +..|+.+++++|++. .+..++..+..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 4 ~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~ 67 (179)
T 3f6q_A 4 EFMDDIFTQ--CREGNAVAVRLWLDN---TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-----------INV 67 (179)
T ss_dssp ---CCHHHH--HHHTCHHHHHHHHHC---TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred HHHHHHHHH--HHcCCHHHHHHHHhc---CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----------CCC
Confidence 466778888 888888888777664 3555677777888888888888888888888888777 556
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~ 216 (424)
.+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 146 (179)
T 3f6q_A 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146 (179)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH
Confidence 67778888888888888888888888887765 66777888888888888888888888888888888888888888887
Q ss_pred HccccCCcHHHHHHHHhhcCCc
Q 014436 217 MYFDFKGDHHAMRQLFGRKKSL 238 (424)
Q Consensus 217 ~~~~~~~~~~~~~~Ll~~~~~~ 238 (424)
.. ++.+++++|++.+...
T Consensus 147 ~~----~~~~~~~~L~~~g~~~ 164 (179)
T 3f6q_A 147 AP----LRELLRERAEKMGQNL 164 (179)
T ss_dssp HH----HHHHHHHHHHHTTCCC
T ss_pred HH----HHHHHHHHHHHhhcCc
Confidence 77 7778888888777663
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=1.2e-28 Score=198.00 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=106.9
Q ss_pred cccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHH
Q 014436 55 LQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMI 134 (424)
Q Consensus 55 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i 134 (424)
+..|.|+||.| ++.|+.+++++|++. .+...+..+..|.||||+|+..|+.+++++|+++|++ +
T Consensus 5 ~~~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~ 68 (165)
T 3twr_A 5 NSEADRQLLEA--AKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-----------V 68 (165)
T ss_dssp -CHHHHHHHHH--HHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------T
T ss_pred cchhhHHHHHH--HHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-----------C
Confidence 34566677777 777777766666553 2344455566667777777777777777777777766 4
Q ss_pred HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 014436 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA 214 (424)
Q Consensus 135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~ 214 (424)
+..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++
T Consensus 69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147 (165)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHh
Confidence 4566667777777777777777777777777655 556667777777777777777777777777777777777777777
Q ss_pred HHHccccCCcHHHHHHHHhhc
Q 014436 215 AVMYFDFKGDHHAMRQLFGRK 235 (424)
Q Consensus 215 a~~~~~~~~~~~~~~~Ll~~~ 235 (424)
|+. ++.+++++|++.+
T Consensus 148 a~~-----~~~~i~~~L~~~g 163 (165)
T 3twr_A 148 VKD-----GDTDIQDLLRGDA 163 (165)
T ss_dssp SCT-----TCHHHHHHHHTC-
T ss_pred Hhc-----CChHHHHHHhhcc
Confidence 543 5667777776554
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.3e-27 Score=189.38 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=136.9
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK 176 (424)
Q Consensus 97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 176 (424)
..||||.|+..|+.+++++|+++|.+.. .+..|.||||+|+..|+.+++++|++.|++++ ..+..|.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~ 68 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDR 68 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCC
Confidence 3589999999999999999999998632 46789999999999999999999999999876 7788899
Q ss_pred cHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc
Q 014436 177 TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256 (424)
Q Consensus 177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 256 (424)
||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.+.. ++.++..|.||+++|+..
T Consensus 69 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH----NHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999999999998 999999999998776 578888999999999999
Q ss_pred CChhHHHHH
Q 014436 257 GKYWINDLL 265 (424)
Q Consensus 257 ~~~~~~~~l 265 (424)
|+.+++++|
T Consensus 144 ~~~~i~~~L 152 (153)
T 1awc_B 144 GNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 988888776
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=4.8e-29 Score=203.10 Aligned_cols=167 Identities=23% Similarity=0.241 Sum_probs=151.3
Q ss_pred CCCHHHHHHHHcCCCchhHHHHHHH-HHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436 24 QTDPKLLKAAADGNAEPFKDMAREV-IESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH 102 (424)
Q Consensus 24 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 102 (424)
.+.++|+.||..|+.++|++|++.+ .+.+..+..|.||||+| +..|+.+++++|++. +..++..|..|.||||
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIMR----GARINVMNRGDDTPLH 77 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCCHHH
Confidence 3456799999999999999999974 44557888999999999 999999999999986 7888889999999999
Q ss_pred HHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH
Q 014436 103 VAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA 182 (424)
Q Consensus 103 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 182 (424)
+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|+++. ..+..|.|||++|
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~-----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A 145 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKAD-----------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKA 145 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGS
T ss_pred HHHHcCCHHHHHHHHHcCCC-----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHH
Confidence 99999999999999999998 66788999999999999999999999999999976 7889999999999
Q ss_pred HhcCChHHHHHHHHhCCCCCCCCCCC
Q 014436 183 AESESSDMVLTLLENCTSLSHEGPNG 208 (424)
Q Consensus 183 ~~~~~~~~v~~Ll~~~~~~~~~~~~~ 208 (424)
+..++.+++++|+++|++++..+..+
T Consensus 146 ~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 146 KAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHHHHHHHHHhhcCcccCCccc
Confidence 99999999999999999998766543
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=8.8e-28 Score=191.03 Aligned_cols=150 Identities=25% Similarity=0.264 Sum_probs=80.6
Q ss_pred CcHHHHHHHcCcHHHHHHHHHhc-hhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436 98 DTPLHVAAKFGHSDIVRVLIDRA-KLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK 176 (424)
Q Consensus 98 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 176 (424)
.||||.|+..|+.+++++|++.. .+ ++..+..|.||||+ +..|+.+++++|++.|++++ ..+..|.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~ 69 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVH-----------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGT 69 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCC-----------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcC-----------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCC
Confidence 35555555555555555555551 12 33444555555555 55555555555555555543 4445555
Q ss_pred cHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc
Q 014436 177 TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256 (424)
Q Consensus 177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 256 (424)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++. . .++..+..|.|||++|+..
T Consensus 70 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~-~-~~~~~~~~g~t~l~~A~~~ 143 (156)
T 1bd8_A 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE----GHTAVVSFLAAE-S-DLHRRDARGLTPLELALQR 143 (156)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH----TCHHHHHHHHTT-S-CTTCCCTTSCCHHHHHHHS
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh----ChHHHHHHHHhc-c-CCCCcCCCCCCHHHHHHHc
Confidence 555555555555555555555555555555555555555555 555555555555 2 2345555555555555555
Q ss_pred CChhHHHHHh
Q 014436 257 GKYWINDLLE 266 (424)
Q Consensus 257 ~~~~~~~~l~ 266 (424)
|+.+++++|.
T Consensus 144 ~~~~~v~~Ll 153 (156)
T 1bd8_A 144 GAQDLVDILQ 153 (156)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555555443
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=7.1e-27 Score=185.77 Aligned_cols=154 Identities=25% Similarity=0.336 Sum_probs=131.0
Q ss_pred CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccc
Q 014436 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD 220 (424)
Q Consensus 141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~ 220 (424)
+.||||.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-- 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-- 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--
Confidence 35889999999999999999988322234678889999999 889999999999999999999999999999999998
Q ss_pred cCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHH
Q 014436 221 FKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300 (424)
Q Consensus 221 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll 300 (424)
++.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|... ...+..+. .|.||||+|+..|+.+++++|+
T Consensus 79 --~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 79 --GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp --TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHH
T ss_pred --CcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC-CCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999988866 578888999999999999999988888777 55555554 8889999999999999999998
Q ss_pred hh
Q 014436 301 SL 302 (424)
Q Consensus 301 ~~ 302 (424)
++
T Consensus 154 ~~ 155 (156)
T 1bd8_A 154 GH 155 (156)
T ss_dssp TT
T ss_pred hh
Confidence 74
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.5e-27 Score=190.28 Aligned_cols=160 Identities=24% Similarity=0.238 Sum_probs=133.4
Q ss_pred hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN 172 (424)
Q Consensus 93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 172 (424)
.|..|.||||.|+..|+.+++++|++.+... ++..+..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 72 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN----------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKD 72 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT----------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC----------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccC
Confidence 3566789999999999999999999865432 34566778899999999999999999999998866 777
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHH
Q 014436 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY 252 (424)
Q Consensus 173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~ 252 (424)
..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.+.. ++.++..|.||+++
T Consensus 73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 73 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK----GKYEICKLLLQHGAD-PTKKNRDGNTPLDL 147 (165)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCTGGG
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CcccCCCCCChhHh
Confidence 8899999999999999999999999999999999999999999998 899999999988766 57888888888888
Q ss_pred HHhcCChhHHHHHhhcc
Q 014436 253 AAYHGKYWINDLLEIDQ 269 (424)
Q Consensus 253 a~~~~~~~~~~~l~~~~ 269 (424)
|+. ++.+++++|...+
T Consensus 148 a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 148 VKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp SCT-TCHHHHHHHHTC-
T ss_pred Hhc-CChHHHHHHhhcc
Confidence 666 6677777776544
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=9e-29 Score=211.12 Aligned_cols=163 Identities=15% Similarity=0.036 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436 24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV 103 (424)
Q Consensus 24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~ 103 (424)
.+.|+|+.|+..|+.+.++.|++.|.+.... ..|.||||+| +..|+.+++++|++. +..++.+|..|.||||+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHN 76 (239)
T ss_dssp ----------------------------------CHHHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHH
Confidence 4567788888888888888888877766554 3677778887 777777777777764 55667777777788888
Q ss_pred HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH-
Q 014436 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA- 182 (424)
Q Consensus 104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A- 182 (424)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++...+..+.||||+|
T Consensus 77 A~~~g~~~~v~~Ll~~ga~-----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~ 145 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVN-----------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred HHHcCCHHHHHHHHHcCCC-----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHH
Confidence 8887888888888877776 5566777778888887777778888887777776633333333787777
Q ss_pred -HhcCChHHHHHHHHhCCCCCCC
Q 014436 183 -AESESSDMVLTLLENCTSLSHE 204 (424)
Q Consensus 183 -~~~~~~~~v~~Ll~~~~~~~~~ 204 (424)
+..|+.+++++|+++|++++..
T Consensus 146 ~~~~g~~~~~~~Ll~~~a~~~~~ 168 (239)
T 1ycs_B 146 EMEEGYTQCSQFLYGVQEKMGIM 168 (239)
T ss_dssp SSSTTCCCHHHHHHHHHHHTTTT
T ss_pred HhhhccHHHHHHHHHhhhccccc
Confidence 6667777787777777666554
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.6e-27 Score=203.35 Aligned_cols=212 Identities=13% Similarity=0.059 Sum_probs=122.2
Q ss_pred cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHH
Q 014436 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217 (424)
Q Consensus 138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~ 217 (424)
+..|.||||.|+..+..+.++.|+++|.++.. +..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 34577888888888888888888888777652 3557788888888888888888888888777777778888888877
Q ss_pred ccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHH
Q 014436 218 YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE 297 (424)
Q Consensus 218 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~ 297 (424)
. ++.+++++|++.+.+ ++..|. .|.||||+|+..|+.++++
T Consensus 80 ~----g~~~~v~~Ll~~ga~-~~~~d~----------------------------------~g~tpL~~A~~~~~~~~v~ 120 (239)
T 1ycs_B 80 A----GHTEIVKFLVQFGVN-VNAADS----------------------------------DGWTPLHCAASCNNVQVCK 120 (239)
T ss_dssp H----TCHHHHHHHHHHTCC-TTCCCT----------------------------------TCCCHHHHHHHTTCHHHHH
T ss_pred c----CCHHHHHHHHHcCCC-CCccCC----------------------------------CCCCHHHHHHHcCCHHHHH
Confidence 7 777777777776554 244333 5566666666677777777
Q ss_pred HHHhhCCCccccccCCCC-cHHHHH--HHcCCccchHHhhhCCccccccccc---------cCCCCcHHHHHHhcCCcch
Q 014436 298 TILSLAPECFELVDNRRW-NFLHYA--VASFQLQDLKPLLRNPFARILINEG---------DAKGNTPLHVFAAVRPSEF 365 (424)
Q Consensus 298 ~Ll~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~ll~~~~~~~~i~~~---------d~~g~t~L~~A~~~~~~~~ 365 (424)
+|++.|+++ +.++..|. ||+|+| +..++.+++++|++. +++++.. +..|.++++++...|. +
T Consensus 121 ~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~---~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~ 194 (239)
T 1ycs_B 121 FLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV---QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--C 194 (239)
T ss_dssp HHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH---HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--E
T ss_pred HHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHh---hhcccccccceEEEEeccCCCCCCcccccCCC--E
Confidence 777777776 55555554 777777 667777777777776 5555554 6678888888877665 4
Q ss_pred hhhhccccchh------hhhhcCCCCchhhHHhhcCchh
Q 014436 366 NRYMSRTTHAN------YQAVNDQNVSVGHIMKYGYPEL 398 (424)
Q Consensus 366 ~~~LL~~~g~~------~~~~~~~g~t~l~~a~~~~~~~ 398 (424)
++.+.. .+.+ ....++.|.+|..|+.. +++.
T Consensus 195 i~vl~~-~~~~~~~Ww~~~~~~~~G~~P~~yv~~-~~~~ 231 (239)
T 1ycs_B 195 MTIIHR-EDEDEIEWWWARLNDKEGYVPRNLLGL-YPRI 231 (239)
T ss_dssp EEECCC-CTTSCSSEEEEEETTEEEEEEGGGEEC-CC--
T ss_pred EEEEEe-cCCCCCCEEEEEECCcEEEeehHHeeE-CCcC
Confidence 433333 4443 23567788999999753 4443
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=2.9e-26 Score=177.53 Aligned_cols=133 Identities=19% Similarity=0.185 Sum_probs=123.0
Q ss_pred chhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCC
Q 014436 87 PALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD 166 (424)
Q Consensus 87 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 166 (424)
+..++..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+. ++.+++++|+++|++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~ 69 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-----------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE 69 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC
Confidence 345677899999999999999999999999999988 66778899999999999 999999999999999
Q ss_pred CCCCCCCC-CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436 167 YPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK 236 (424)
Q Consensus 167 ~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~ 236 (424)
++ ..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.++
T Consensus 70 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ----GHRDIARYLHAATG 135 (136)
T ss_dssp SS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH----TCHHHHHHHHHHHC
T ss_pred CC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc----CCHHHHHHHHHcCC
Confidence 76 67777 99999999999999999999999999999999999999999999 99999999998875
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=9e-26 Score=179.17 Aligned_cols=146 Identities=17% Similarity=0.116 Sum_probs=114.8
Q ss_pred hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC
Q 014436 90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY 169 (424)
Q Consensus 90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 169 (424)
.+..+..|.||||+|+..|+.++|++|+++|++ ++..+..|.||||+|+ .|+.+++++|+++|++++
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~- 71 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGAN-----------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN- 71 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCC-----------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-
Confidence 345678899999999999999999999999987 6677889999999985 899999999999999876
Q ss_pred CCCCCCCc-HHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCCh
Q 014436 170 SANDYGKT-PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT 248 (424)
Q Consensus 170 ~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t 248 (424)
..+..|.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.++. ++..+..|.|
T Consensus 72 ~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t 146 (156)
T 1bi7_B 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL----GHRDVARYLRAAAGG-TRGSNHARID 146 (156)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHSSCC-------------
T ss_pred CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh----CHHHHHHHHHHcCCC-CCccCcCcCc
Confidence 77888998 99999999999999999999999999999999999999999 999999999998877 5788888888
Q ss_pred HHHHH
Q 014436 249 PIHYA 253 (424)
Q Consensus 249 ~l~~a 253 (424)
|.+.+
T Consensus 147 ~~~~~ 151 (156)
T 1bi7_B 147 AAEGP 151 (156)
T ss_dssp -----
T ss_pred ccccC
Confidence 87643
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=3.1e-27 Score=192.28 Aligned_cols=159 Identities=11% Similarity=0.116 Sum_probs=134.3
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhh----ccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436 27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAEN----ASTKFVEEILEICPALLIQVNAKGDTPLH 102 (424)
Q Consensus 27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 102 (424)
++|+.||+.|+++.++.+++.+++. ..+..|.||||+| +.+++. +++++|++. +++++.+|..|+||||
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDV--LRNNNDEARYKISMFLINK----GADIKSRTKEGTTLFF 80 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCCTHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCcHHH
Confidence 4599999999999999999877542 2336799999999 888864 588888875 8899999999999999
Q ss_pred HHHHcCc------HHHHHHHHHhchhcccchHHHHHHHHHhcCCCC-cHHHHHHhCC-----CHHHHHHHhh-cCCCCCC
Q 014436 103 VAAKFGH------SDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKN-TALHDAMFPG-----NMEVVKILTR-EDPDYPY 169 (424)
Q Consensus 103 ~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~~~~~~~ 169 (424)
+|+..|+ .+++++|+++|++ ++.+|..|. ||||+|+..+ ..+++++|++ .|++++
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gad-----------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~- 148 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGAD-----------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL- 148 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCC-----------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCC-----------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-
Confidence 9999886 6889999999998 678889999 9999999854 3568899999 899876
Q ss_pred CCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC
Q 014436 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204 (424)
Q Consensus 170 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~ 204 (424)
..|..|.||||+|+..++.++|++|.++..+.+.+
T Consensus 149 ~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 149 IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 78888999999999999999999998876544443
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=3.8e-26 Score=176.87 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=107.5
Q ss_pred hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHH
Q 014436 53 LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQ 132 (424)
Q Consensus 53 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 132 (424)
..+..|.||||+| +..|+.+++++|++. +..++.+|..|.||||+|+. |+.+++++|+++|++
T Consensus 7 ~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---------- 69 (136)
T 1d9s_A 7 MLGGSSDAGLATA--AARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---------- 69 (136)
T ss_dssp CCCCCCSCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC----------
T ss_pred CCCCCCccHHHHH--HHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC----------
Confidence 5566788888888 888888888888875 66777788888888888888 888888888888887
Q ss_pred HHHHhcCC-CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436 133 MIRMVNNK-KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200 (424)
Q Consensus 133 ~i~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 200 (424)
++.+|.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|+|
T Consensus 70 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 70 -PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp -SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred -CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5567777 8888888888888888888888888866 6777888888888888888888888888865
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=2.4e-25 Score=181.17 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=133.5
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCH----HHHHHHhhcCCCCCCCCC
Q 014436 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM----EVVKILTREDPDYPYSAN 172 (424)
Q Consensus 97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~ 172 (424)
++++|+.|++.|+.+.++.++..+.+. ..+..|+||||+|+.+++. +++++|+++|++++ .++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~------------~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d 72 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED------------KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRT 72 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC------------HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc------------ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCC
Confidence 568899999999999999999887542 1236799999999999975 59999999999987 778
Q ss_pred CCCCcHHHHHHhcCC------hHHHHHHHHhCCCCCCCCCCCC-cHHHHHHHcccc-CCcHHHHHHHHh-hcCCcccccC
Q 014436 173 DYGKTPLYMAAESES------SDMVLTLLENCTSLSHEGPNGK-TALHAAVMYFDF-KGDHHAMRQLFG-RKKSLLKVTD 243 (424)
Q Consensus 173 ~~g~t~L~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~-t~L~~a~~~~~~-~~~~~~~~~Ll~-~~~~~~~~~~ 243 (424)
..|+||||+|+..++ .+++++|+++|++++.+|..|. ||||+|+..... .+..++++.|+. .+++ ++.+|
T Consensus 73 ~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d 151 (186)
T 3t8k_A 73 KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKD 151 (186)
T ss_dssp TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCC
T ss_pred CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccC
Confidence 999999999999887 5789999999999999999999 999999984110 134568889998 6665 68899
Q ss_pred CCCChHHHHHHhcCChhHHHHHhhccc
Q 014436 244 QYGWTPIHYAAYHGKYWINDLLEIDQT 270 (424)
Q Consensus 244 ~~~~t~l~~a~~~~~~~~~~~l~~~~~ 270 (424)
..|.||||+|+..|+.+++++|.....
T Consensus 152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 152 KWGLTALEFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp TTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999998888887765443
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=4.9e-24 Score=162.75 Aligned_cols=125 Identities=32% Similarity=0.502 Sum_probs=116.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG 175 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 175 (424)
+|.||||.|+..|+.+++++|+++|.+ ++..+..|.||||+|+..++.+++++|++.|.++. ..+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g 68 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNG 68 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-----------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCC
Confidence 489999999999999999999999987 56678899999999999999999999999999876 778889
Q ss_pred CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436 176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK 236 (424)
Q Consensus 176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~ 236 (424)
.||||+|+..++.+++++|+++|++++.++..|.|||++|+.. ++.+++++|++.++
T Consensus 69 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN----GHLEVVKLLLEAGA 125 (126)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHTC
T ss_pred CcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc----CcHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999 99999999998875
No 87
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=3.8e-25 Score=175.52 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=110.7
Q ss_pred cccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCc-HH
Q 014436 240 KVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWN-FL 318 (424)
Q Consensus 240 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-~l 318 (424)
...+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+ .++.+++++|++.|+++ +.++..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHH
Confidence 34566778888888888888877777777666565555 8889999985 89999999999999986 889999999 99
Q ss_pred HHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHH
Q 014436 319 HYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIM 391 (424)
Q Consensus 319 ~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a 391 (424)
|+|+..++.+++++|++. |++++.+|..|+||||+|+..++.+++++|++ +|++++.+|..|.||.+-+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred HHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence 999999999999999998 89999999999999999999999999999988 8999999999999998754
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=2.3e-24 Score=166.77 Aligned_cols=127 Identities=24% Similarity=0.277 Sum_probs=113.5
Q ss_pred hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN 172 (424)
Q Consensus 93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 172 (424)
....+.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d 77 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-----------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVD 77 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCC
Confidence 345678999999999999999999999988 66778899999999999999999999999999876 678
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK 235 (424)
Q Consensus 173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~ 235 (424)
..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.+
T Consensus 78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~----~~~~~~~~Ll~~G 136 (136)
T 2jab_A 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN----GNEDLAEILQKLN 136 (136)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC----CCHHHHHHHHHcC
Confidence 8899999999999999999999999999999999999999999998 9999999998753
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=2.5e-24 Score=164.40 Aligned_cols=126 Identities=30% Similarity=0.434 Sum_probs=115.3
Q ss_pred cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436 57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136 (424)
Q Consensus 57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~ 136 (424)
+|.||||+| +..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------~~~ 63 (126)
T 1n0r_A 1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----------VNA 63 (126)
T ss_dssp CCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------TTC
T ss_pred CCccHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----------Ccc
Confidence 488999999 999999999999986 667788889999999999999999999999999988 567
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 200 (424)
+|..|.||||+|+..++.+++++|+++|+++. ..+..|.|||++|+..++.+++++|+++|++
T Consensus 64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 78899999999999999999999999999876 7788899999999999999999999999975
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=1.8e-24 Score=167.42 Aligned_cols=127 Identities=22% Similarity=0.296 Sum_probs=104.7
Q ss_pred ccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHH
Q 014436 54 TLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM 133 (424)
Q Consensus 54 ~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 133 (424)
....+.||||+| +..|+.+++++|++. +..++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 10 ~~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 72 (136)
T 2jab_A 10 HGSDLGKKLLEA--ARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD----------- 72 (136)
T ss_dssp --CHHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred ccccccHHHHHH--HHhCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 344677888888 888888888888875 666777888888888888888888888888888887
Q ss_pred HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC
Q 014436 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC 198 (424)
Q Consensus 134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 198 (424)
++..|..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..++.+++++|+++|
T Consensus 73 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 56677888889999888888889998888888865 67788889999998888888888888765
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=1.9e-24 Score=167.59 Aligned_cols=128 Identities=21% Similarity=0.179 Sum_probs=110.0
Q ss_pred hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA 171 (424)
Q Consensus 92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 171 (424)
.+|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|.+++ ..
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~ 72 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-----------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TT 72 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-Cc
Confidence 4678899999999999999999999999887 55678889999999999999999999999999866 77
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK 235 (424)
Q Consensus 172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~ 235 (424)
+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+.. +..+++.++....
T Consensus 73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE----SMKSLLLLPEKNE 132 (137)
T ss_dssp CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH----HHHHHHSCC----
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc----cHHHHHhhccccc
Confidence 88899999999999999999999999999999999999999999876 6666666555433
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=5.6e-24 Score=173.55 Aligned_cols=141 Identities=23% Similarity=0.209 Sum_probs=122.2
Q ss_pred hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436 93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN 172 (424)
Q Consensus 93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 172 (424)
.+..|.||||.|+..|+.++++.|++ |.+ ++.+|..|.||||+|+..|+.+++++|+++|++++...+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 107 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD-----------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Confidence 45678899999999999999999999 776 667889999999999999999999999999999875544
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHH
Q 014436 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY 252 (424)
Q Consensus 173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~ 252 (424)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++. ..+.+++++
T Consensus 108 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~------------------~~~~~~l~~ 165 (183)
T 3deo_A 108 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI----LKT------------------TPKGNPMQF 165 (183)
T ss_dssp SSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH----HHT------------------CCCCSHHHH
T ss_pred CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh----ccC------------------cccccHHHH
Confidence 8899999999999999999999999999999999999999999875 211 245678888
Q ss_pred HHhcCChhHHHHHhh
Q 014436 253 AAYHGKYWINDLLEI 267 (424)
Q Consensus 253 a~~~~~~~~~~~l~~ 267 (424)
++..|..+++++|..
T Consensus 166 a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 166 GRRIGLEKVINVLEG 180 (183)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHH
Confidence 888887777777754
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=1.1e-23 Score=179.96 Aligned_cols=141 Identities=23% Similarity=0.191 Sum_probs=111.6
Q ss_pred cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436 57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136 (424)
Q Consensus 57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~ 136 (424)
.+.+++..+ +..|+.+.+..+... ....+..|.||||.|+..|+.+++++|++ |++ ++.
T Consensus 14 ~~~~~~l~~--~~~g~~~~~~~~~~~-------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----------~~~ 72 (244)
T 3ui2_A 14 EGAMEYLIE--WKDGHSPSWVPSSYI-------AADVVSEYETPWWTAARKADEQALSQLLE-DRD-----------VDA 72 (244)
T ss_dssp TTEEEEEEE--ESSCCCCEEEEGGGS-------CHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-----------TTC
T ss_pred CCccHHHHH--HHcCCCccccccccc-------ccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC-----------CCC
Confidence 455566666 666666654332211 12345578899999999999999999998 776 667
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~ 216 (424)
+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 73 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152 (244)
T ss_dssp BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 78889999999999999999999999999877444478999999999999999999999999999999999999999988
Q ss_pred Hc
Q 014436 217 MY 218 (424)
Q Consensus 217 ~~ 218 (424)
..
T Consensus 153 ~~ 154 (244)
T 3ui2_A 153 EI 154 (244)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=2.7e-23 Score=157.75 Aligned_cols=112 Identities=23% Similarity=0.246 Sum_probs=101.2
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436 94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND 173 (424)
Q Consensus 94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 173 (424)
+..|.||||.|+..|+.+++++|++.|.+ ++..|..|.||||+|+..|+.+++++|++.|++++ ..+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~ 71 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-----------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDK 71 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-----------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCT
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-----------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCC
Confidence 55788999999999999999999999987 66778899999999999999999999999999976 7788
Q ss_pred CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHH
Q 014436 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217 (424)
Q Consensus 174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~ 217 (424)
.|.||||+|+..++.+++++|+++|++++.+|..|.|||++|..
T Consensus 72 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 72 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 89999999999999999999999999999999999999999854
No 95
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=2.6e-24 Score=166.80 Aligned_cols=133 Identities=23% Similarity=0.357 Sum_probs=114.2
Q ss_pred HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccch
Q 014436 48 VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD 127 (424)
Q Consensus 48 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 127 (424)
|+++ .++..|.||||+| +..|+.+++++|++. +..++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 1 G~d~-~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----- 68 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIA--SIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL----- 68 (137)
T ss_dssp ---C-CCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred CCCC-CcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----
Confidence 4455 6778999999999 999999999999986 777888899999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCC
Q 014436 128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199 (424)
Q Consensus 128 ~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 199 (424)
++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.|||++|+..+..+++++|.+.+.
T Consensus 69 ------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 69 ------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp ------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred ------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 66778899999999999999999999999999976 788899999999999888888887776653
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=5e-23 Score=173.57 Aligned_cols=133 Identities=23% Similarity=0.226 Sum_probs=116.2
Q ss_pred hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhc-CCCCC
Q 014436 90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE-DPDYP 168 (424)
Q Consensus 90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 168 (424)
++..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++. |.+++
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 134 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-----------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCC-----------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence 345688899999999999999999999999988 667889999999999999999999999999 88866
Q ss_pred CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc
Q 014436 169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238 (424)
Q Consensus 169 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~ 238 (424)
..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+.. +..++++.++..+...
T Consensus 135 -~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 135 -QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA----ACASLLKKKQGTDAVR 199 (222)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH----HHHHHHC---------
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch----hHHHHHHHHhccchhh
Confidence 7889999999999999999999999999999999999999999999998 9999999999877653
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=9.6e-23 Score=154.68 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=103.8
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHH
Q 014436 279 RKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA 358 (424)
Q Consensus 279 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~ 358 (424)
.|.||||.|+..|+.+++++|++.|+++ +.++..|+||||+|+..++.+++++|++. |++++.+|..|+||||+|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAV 81 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHHHH
Confidence 6789999999999999999999999986 88999999999999999999999999998 8999999999999999999
Q ss_pred hcCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436 359 AVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK 392 (424)
Q Consensus 359 ~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~ 392 (424)
..++.+++++|++ +|++++.+|..|+||+++|.
T Consensus 82 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 82 YEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence 9999999999998 79999999999999999994
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=3e-22 Score=163.26 Aligned_cols=141 Identities=23% Similarity=0.252 Sum_probs=126.9
Q ss_pred hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCCcHHHHH
Q 014436 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG-PNGKTALHAA 215 (424)
Q Consensus 137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a 215 (424)
.+..|.||||+|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 45678899999999999999999999 88866 788899999999999999999999999999999888 8999999999
Q ss_pred HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHH
Q 014436 216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHART 295 (424)
Q Consensus 216 ~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 295 (424)
+.. ++.+++++|++.+.. ++.+|..|.||||+|+..++. ..+.++|++|+..|..++
T Consensus 118 ~~~----~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i 174 (183)
T 3deo_A 118 AGY----VRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKV 174 (183)
T ss_dssp HHT----TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHH
T ss_pred Hhc----CcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHH
Confidence 999 999999999999877 588999999999999875421 255689999999999999
Q ss_pred HHHHHhh
Q 014436 296 VETILSL 302 (424)
Q Consensus 296 v~~Ll~~ 302 (424)
+++|.++
T Consensus 175 ~~~L~~~ 181 (183)
T 3deo_A 175 INVLEGQ 181 (183)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9998764
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=4.2e-22 Score=170.12 Aligned_cols=170 Identities=23% Similarity=0.204 Sum_probs=140.5
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK 176 (424)
Q Consensus 97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 176 (424)
+.+++..++..|+.+.+..+...+. ..+..|.||||+|+..|+.+++++|++ +.+++ ..+..|.
T Consensus 15 ~~~~~l~~~~~g~~~~~~~~~~~~~--------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~ 78 (244)
T 3ui2_A 15 GAMEYLIEWKDGHSPSWVPSSYIAA--------------DVVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGR 78 (244)
T ss_dssp TEEEEEEEESSCCCCEEEEGGGSCH--------------HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSC
T ss_pred CccHHHHHHHcCCCccccccccccc--------------ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCC
Confidence 3444555555555544444333332 234578899999999999999999999 88866 7888999
Q ss_pred cHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436 177 TPLYMAAESESSDMVLTLLENCTSLSHEG-PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255 (424)
Q Consensus 177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 255 (424)
||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.. ++.+++++|++.++. ++..+..|.||||+|+.
T Consensus 79 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY----VRPEVVEALVELGAD-IEVEDERGLTALELARE 153 (244)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHH
Confidence 99999999999999999999999999888 8899999999999 999999999999877 58899999999999986
Q ss_pred cCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCC
Q 014436 256 HGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305 (424)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~ 305 (424)
.+.. ..+.+||++|+..|+.+++++|++.+.+
T Consensus 154 ~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 154 ILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHTT------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHhc------------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 4321 2667999999999999999999987543
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=176.63 Aligned_cols=145 Identities=16% Similarity=0.020 Sum_probs=121.7
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhC---CCHHHHHHHhhcCCCCCCCCCC
Q 014436 97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP---GNMEVVKILTREDPDYPYSAND 173 (424)
Q Consensus 97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~ 173 (424)
..++|+.|+..|+.+.++.|++.|+++..... ....+..|.||||+|+.. ++.+++++|+++|++++ ..+.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~-----~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~ 224 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP-----GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAA 224 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE-----CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCT
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCC-----CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCC
Confidence 45789999999999999999999988431100 000578999999999987 89999999999999977 7788
Q ss_pred CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253 (424)
Q Consensus 174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 253 (424)
.|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.. ++.+++++|++.++. .|.||||+|
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~----~~~~iv~~Ll~~ga~-------~g~tpLh~A 293 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK----HHKECEELLEQAQAG-------TFAFPLHVD 293 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHH-------TTSSCCC--
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHhcCC-------CCCChhHHH
Confidence 999999999999999999999999999999999999999999999 999999999998754 478999999
Q ss_pred HhcCC
Q 014436 254 AYHGK 258 (424)
Q Consensus 254 ~~~~~ 258 (424)
+..|+
T Consensus 294 ~~~g~ 298 (301)
T 2b0o_E 294 YSWVI 298 (301)
T ss_dssp -----
T ss_pred HhcCC
Confidence 98875
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=1.5e-23 Score=184.23 Aligned_cols=139 Identities=19% Similarity=0.135 Sum_probs=115.9
Q ss_pred ccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhh------hccCCCcHHHHHHHc---CcHHHHHHHHHhchhcccc
Q 014436 56 QTRNTILHINIMCQDAENASTKFVEEILEICPALLIQ------VNAKGDTPLHVAAKF---GHSDIVRVLIDRAKLAQDG 126 (424)
Q Consensus 56 ~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~ 126 (424)
....++|+.| +..|+.+.++.|++. +..++. .+..|.||||+|+.. |+.+++++|+++|++
T Consensus 149 ~~~~~~L~~A--~~~g~~~~v~~ll~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---- 218 (301)
T 2b0o_E 149 TPEPQRLWTA--ICNRDLLSVLEAFAN----GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---- 218 (301)
T ss_dssp C-CHHHHHHH--HHTTCHHHHHHHHHT----TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC----
T ss_pred CchHHHHhhh--hhccCHHHHHHHHhc----CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC----
Confidence 3466789999 889998888888764 556665 688899999999987 889999999999988
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCC
Q 014436 127 DEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGP 206 (424)
Q Consensus 127 ~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 206 (424)
++.+|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..++.+++++|+++|++
T Consensus 219 -------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------ 284 (301)
T 2b0o_E 219 -------LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG------ 284 (301)
T ss_dssp -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------
T ss_pred -------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------
Confidence 66788899999999999999999999999999976 7888899999999999999999999999976
Q ss_pred CCCcHHHHHHHc
Q 014436 207 NGKTALHAAVMY 218 (424)
Q Consensus 207 ~~~t~L~~a~~~ 218 (424)
.|.||||+|+.+
T Consensus 285 ~g~tpLh~A~~~ 296 (301)
T 2b0o_E 285 TFAFPLHVDYSW 296 (301)
T ss_dssp TTSSCCC-----
T ss_pred CCCChhHHHHhc
Confidence 478999999887
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=7.2e-23 Score=172.62 Aligned_cols=138 Identities=18% Similarity=0.172 Sum_probs=113.7
Q ss_pred hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHh-chhcccchHHHH
Q 014436 53 LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAAR 131 (424)
Q Consensus 53 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~ 131 (424)
..+..|.||||+| +..|+.+++++|++. +..++.+|..|.||||+|+..|+.++|++|++. |++
T Consensus 68 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~--------- 132 (222)
T 3ehr_A 68 EQAESIDNPLHEA--AKRGNLSWLRECLDN----RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE--------- 132 (222)
T ss_dssp HHEEEESCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---------
T ss_pred ccccccccccccc--cccCcHHHHHHHHhC----CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---------
Confidence 4556899999999 999999999999985 777888999999999999999999999999998 887
Q ss_pred HHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCC
Q 014436 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208 (424)
Q Consensus 132 ~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 208 (424)
++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.|||++|+..+..++++.|++.++.....+..+
T Consensus 133 --~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 133 --LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp --CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred --ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 66788999999999999999999999999999976 788899999999999999999999999998877655443
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=3.6e-21 Score=137.97 Aligned_cols=93 Identities=34% Similarity=0.529 Sum_probs=74.9
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436 96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG 175 (424)
Q Consensus 96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 175 (424)
+|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g 68 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNG 68 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCC
Confidence 377888888888888888888888877 56677788888888888888888888888888865 677778
Q ss_pred CcHHHHHHhcCChHHHHHHHHhCCC
Q 014436 176 KTPLYMAAESESSDMVLTLLENCTS 200 (424)
Q Consensus 176 ~t~L~~A~~~~~~~~v~~Ll~~~~~ 200 (424)
.||||+|+..|+.+++++|+++|++
T Consensus 69 ~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 69 RTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 8888888888888888888888764
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=7.4e-21 Score=165.18 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=86.3
Q ss_pred ChHHHHHHhcCChhHHHHHhhcccccccc-----ccCCCchHHHHHHhc---CCHHHHHHHHhhCCCccccccCCCCcHH
Q 014436 247 WTPIHYAAYHGKYWINDLLEIDQTATNIA-----DKDRKMTALHLAAGR---GHARTVETILSLAPECFELVDNRRWNFL 318 (424)
Q Consensus 247 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l 318 (424)
.++|+.|+..++.+.+..+...+...... ....|.||||+|+.. ++.+++++|++.|+++ +.+|..|+|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence 35666777777666444443333332211 123677788888777 7778888888887775 66777788888
Q ss_pred HHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccch
Q 014436 319 HYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHA 375 (424)
Q Consensus 319 ~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~ 375 (424)
|+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++ +|+
T Consensus 210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga 262 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQ-ALS 262 (278)
T ss_dssp HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHT
T ss_pred HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH-cCC
Confidence 888888888888888876 77788888888888888888888887777766 554
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=3.6e-20 Score=160.85 Aligned_cols=132 Identities=19% Similarity=0.116 Sum_probs=114.3
Q ss_pred CchHHHHHHhcCCHHHHHHHHhhCCCcc-----ccccCCCCcHHHHHHHc---CCccchHHhhhCCccccccccccCCCC
Q 014436 280 KMTALHLAAGRGHARTVETILSLAPECF-----ELVDNRRWNFLHYAVAS---FQLQDLKPLLRNPFARILINEGDAKGN 351 (424)
Q Consensus 280 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~-----~~~~~~g~t~l~~A~~~---~~~~~~~~ll~~~~~~~~i~~~d~~g~ 351 (424)
..++|+.|+..++.+.++.+++.|.++. +..+..|+||||+|+.. ++.+++++|++. |++++.+|..|+
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~---ga~in~~d~~g~ 206 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCC
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC---CCCccccCCCCC
Confidence 3578999999999999999999999852 44488899999999999 899999999998 999999999999
Q ss_pred cHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHHHhhhhhhhhhHh
Q 014436 352 TPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHY 417 (424)
Q Consensus 352 t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (424)
||||+|+..|+.+++++||+ +|++++.+|..|+||||+|+.. ++..+++ .+++....++..|.
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~-~~~~~v~-~Ll~~ga~~~~~~~ 269 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRL-KHEHCEE-LLTQALSGRFNSHV 269 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT-TCHHHHH-HHHHHHTTCCCSSC
T ss_pred CHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHc-CCHHHHH-HHHHcCCCCCCcce
Confidence 99999999999999999998 8999999999999999999864 7777776 33444444444443
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=2.1e-20 Score=167.75 Aligned_cols=143 Identities=15% Similarity=0.106 Sum_probs=100.7
Q ss_pred CCCcHHHHHHHc-CcHHHHHHHHHhchhcccchHHHHHHHHHhc--CCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436 96 KGDTPLHVAAKF-GHSDIVRVLIDRAKLAQDGDEAARQMIRMVN--NKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN 172 (424)
Q Consensus 96 ~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 172 (424)
.+.|+||.|+.. |+.++++.|+++|++ ++..+ ..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-----------vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d 265 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGAD-----------VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QAD 265 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCC-----------TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCC-----------CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCC
Confidence 445788888888 888888888888877 44555 678888888888888888888888888866 677
Q ss_pred CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcc--cccCCCCChHH
Q 014436 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLL--KVTDQYGWTPI 250 (424)
Q Consensus 173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~--~~~~~~~~t~l 250 (424)
..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.. ++.+++++|+..+.... ...+..+.|++
T Consensus 266 ~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~----g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l 341 (368)
T 3jue_A 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET----ANADIVTLLRLAKMREAEAAQGQAGDETYL 341 (368)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHC----------------
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC----CCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence 7788888888888888888888888888888888888888888887 88888888877653321 12333444555
Q ss_pred HHHH
Q 014436 251 HYAA 254 (424)
Q Consensus 251 ~~a~ 254 (424)
..+.
T Consensus 342 ~i~~ 345 (368)
T 3jue_A 342 DIFR 345 (368)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=4.1e-21 Score=143.75 Aligned_cols=108 Identities=27% Similarity=0.348 Sum_probs=92.7
Q ss_pred hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436 92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA 171 (424)
Q Consensus 92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 171 (424)
.+|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..++.+++++|+++|+++. ..
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~ 71 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-AR 71 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-----------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-cc
Confidence 3578899999999999999999999999887 55678889999999999999999999999988866 67
Q ss_pred CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcH
Q 014436 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211 (424)
Q Consensus 172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~ 211 (424)
+..|.||||+|+..++.+++++|+++|++++.++..+.+|
T Consensus 72 d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp CTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 7789999999999999999999999999988888888776
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=1.1e-20 Score=141.45 Aligned_cols=106 Identities=25% Similarity=0.219 Sum_probs=98.8
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHH
Q 014436 278 DRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVF 357 (424)
Q Consensus 278 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A 357 (424)
..|.||||.|+..++.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++. |++++.+|..|+||||+|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHHHH
Confidence 48899999999999999999999999986 78999999999999999999999999998 899999999999999999
Q ss_pred HhcCCcchhhhhccccchhhhhhcCCCCchh
Q 014436 358 AAVRPSEFNRYMSRTTHANYQAVNDQNVSVG 388 (424)
Q Consensus 358 ~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l 388 (424)
+..++.+++++|++ +|++++.++..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred HHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence 99999999999988 8999999999999984
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=6.3e-20 Score=173.10 Aligned_cols=141 Identities=16% Similarity=0.056 Sum_probs=115.5
Q ss_pred CcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHh---CCCHHHHHHHhhcCCCCCCCCCCC
Q 014436 98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMF---PGNMEVVKILTREDPDYPYSANDY 174 (424)
Q Consensus 98 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~~ 174 (424)
.+.||.|+..|+.+.|+.|++.|++.+.... ....+..|.||||+|+. .|+.+++++|+++|++++ ..|..
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~-----~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn-~~d~~ 206 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLP-----GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAAD 206 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC-----CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT-CCCSS
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCC-----CcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCC-ccCCC
Confidence 3779999999999999999999998431100 00127799999999965 899999999999999977 78889
Q ss_pred CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHH
Q 014436 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254 (424)
Q Consensus 175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~ 254 (424)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.+++. +. +|+|.+.
T Consensus 207 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~~~~Ll~~ga~~-~~------~~~h~~~ 275 (497)
T 3lvq_E 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK----HHKECEELLEQAQAGT-FA------FPLHVDY 275 (497)
T ss_dssp SCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT----TCHHHHHHHHHTCC------------------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHhCCCC-CC------Ccceeec
Confidence 99999999999999999999999999999999999999999999 9999999999998774 32 5777665
Q ss_pred h
Q 014436 255 Y 255 (424)
Q Consensus 255 ~ 255 (424)
.
T Consensus 276 ~ 276 (497)
T 3lvq_E 276 S 276 (497)
T ss_dssp -
T ss_pred c
Confidence 4
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=1.4e-19 Score=129.56 Aligned_cols=92 Identities=32% Similarity=0.441 Sum_probs=85.2
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcc
Q 014436 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYF 219 (424)
Q Consensus 140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~ 219 (424)
+|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~- 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN- 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-
Confidence 47899999999999999999999999976 7888999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhhcC
Q 014436 220 DFKGDHHAMRQLFGRKK 236 (424)
Q Consensus 220 ~~~~~~~~~~~Ll~~~~ 236 (424)
++.+++++|++.++
T Consensus 79 ---~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 ---GHLEVVKLLLEAGA 92 (93)
T ss_dssp ---TCHHHHHHHHHTTC
T ss_pred ---CCHHHHHHHHHcCC
Confidence 99999999998765
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=3e-20 Score=175.30 Aligned_cols=135 Identities=19% Similarity=0.117 Sum_probs=114.2
Q ss_pred CcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhh------ccCCCcHHHHHHH---cCcHHHHHHHHHhchhcccchHH
Q 014436 59 NTILHINIMCQDAENASTKFVEEILEICPALLIQV------NAKGDTPLHVAAK---FGHSDIVRVLIDRAKLAQDGDEA 129 (424)
Q Consensus 59 ~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~ 129 (424)
.+.||.| +..|+.+.++.|++. +.+++.. +..|.||||+||. .|+.++|++|+++|++
T Consensus 133 ~~~L~~A--~~~g~~~~v~~ll~~----g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~------- 199 (497)
T 3lvq_E 133 PQRLWTA--ICNRDLLSVLEAFAN----GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH------- 199 (497)
T ss_dssp HHHHHHH--HHHTCHHHHHHHHHT----TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-------
T ss_pred HHHHHHH--HhccCHHHHHHHHhh----cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-------
Confidence 3679999 999999999999986 6666665 8899999999977 8999999999999998
Q ss_pred HHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCC
Q 014436 130 ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209 (424)
Q Consensus 130 ~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 209 (424)
++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 200 ----vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------ 268 (497)
T 3lvq_E 200 ----LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAGTFA------ 268 (497)
T ss_dssp ----TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----------
T ss_pred ----CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------
Confidence 77889999999999999999999999999999977 7889999999999999999999999999999876
Q ss_pred cHHHHHHH
Q 014436 210 TALHAAVM 217 (424)
Q Consensus 210 t~L~~a~~ 217 (424)
+|+|.+..
T Consensus 269 ~~~h~~~~ 276 (497)
T 3lvq_E 269 FPLHVDYS 276 (497)
T ss_dssp --------
T ss_pred Ccceeecc
Confidence 46666554
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=2.9e-20 Score=166.88 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=115.2
Q ss_pred cCCcchhhhhhhHH-hhhccHHHHHHHHHhCchhhhhhc--cCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHH
Q 014436 57 TRNTILHINIMCQD-AENASTKFVEEILEICPALLIQVN--AKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM 133 (424)
Q Consensus 57 ~g~t~L~~A~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 133 (424)
.+.|+||.| +.. ++.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|+++|++
T Consensus 198 ~~~t~L~~A--a~~~g~~~~v~~LL~~----Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad----------- 260 (368)
T 3jue_A 198 HPGALLFRA--SGHPPSLPTMADALAH----GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN----------- 260 (368)
T ss_dssp CHHHHHHHH--TSSSCCHHHHHHHHHT----TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred CCCcHHHHH--HHccCCHHHHHHHHHc----CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-----------
Confidence 456799999 999 999999999885 77788877 8899999999999999999999999998
Q ss_pred HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCC---CCCCCCCCCCc
Q 014436 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT---SLSHEGPNGKT 210 (424)
Q Consensus 134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~~~~~t 210 (424)
++..|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..++.+++++|+..+. +....+..+.|
T Consensus 261 vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t 339 (368)
T 3jue_A 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET 339 (368)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------
T ss_pred CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCC
Confidence 67888999999999999999999999999999976 788899999999999999999999998873 33344556777
Q ss_pred HHHHHHHc
Q 014436 211 ALHAAVMY 218 (424)
Q Consensus 211 ~L~~a~~~ 218 (424)
+++.+...
T Consensus 340 ~l~i~~~~ 347 (368)
T 3jue_A 340 YLDIFRDF 347 (368)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 77766543
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=3.4e-18 Score=126.43 Aligned_cols=93 Identities=26% Similarity=0.374 Sum_probs=60.3
Q ss_pred hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC
Q 014436 90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY 169 (424)
Q Consensus 90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 169 (424)
....+.+|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~- 84 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-----------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX- 84 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-
Confidence 344566667777777777777777777777665 44556667777777777777777777777766654
Q ss_pred CCCCCCCcHHHHHHhcCChHHHHHH
Q 014436 170 SANDYGKTPLYMAAESESSDMVLTL 194 (424)
Q Consensus 170 ~~~~~g~t~L~~A~~~~~~~~v~~L 194 (424)
..+..|.||||+|+..++.+++++|
T Consensus 85 ~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 85 AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 5566677777777777777766654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=4.7e-17 Score=120.26 Aligned_cols=93 Identities=25% Similarity=0.322 Sum_probs=82.7
Q ss_pred HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213 (424)
Q Consensus 134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~ 213 (424)
....+.+|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 56778899999999999999999999999999876 67888999999999999999999999999999999999999999
Q ss_pred HHHHccccCCcHHHHHHH
Q 014436 214 AAVMYFDFKGDHHAMRQL 231 (424)
Q Consensus 214 ~a~~~~~~~~~~~~~~~L 231 (424)
+|+.. ++.+++++|
T Consensus 96 ~A~~~----~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDN----GNEDLAEIL 109 (110)
T ss_dssp HHHHH----TCHHHHHHH
T ss_pred HHHHc----CCHHHHHHh
Confidence 99999 999998876
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=70.70 E-value=1.4 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=19.1
Q ss_pred cCCCHHHHHHHHcCCCchhHHHHH
Q 014436 23 SQTDPKLLKAAADGNAEPFKDMAR 46 (424)
Q Consensus 23 ~~~~~~l~~A~~~g~~~~v~~ll~ 46 (424)
+..+..++.||..||++.++.|-.
T Consensus 11 ~aiEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 11 DAIRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344567999999999999997754
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=50.32 E-value=52 Score=25.35 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=73.6
Q ss_pred CHHHHHHHHcCCCchhHHHHHHHHHHhhccccCC-cchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 014436 26 DPKLLKAAADGNAEPFKDMAREVIESLLTLQTRN-TILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVA 104 (424)
Q Consensus 26 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A 104 (424)
++.+-.|+..|+++....+.+...+ ...+ ..=..| ...|+.++++...... .+-...+.+.
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~A--L~~gn~~lAe~cy~~~-----------~D~~~L~~Ly 70 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND-----SITWERLIQEA--LAQGNASLAEMIYQTQ-----------HSFDKLSFLY 70 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHH--HHTTCHHHHHHHHHHT-----------TCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHH--HHcCChHHHHHHHHHh-----------CCHHHHHHHH
Confidence 4568889999999888877664211 1111 222235 6677777777766651 1112334445
Q ss_pred HHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCH-HHHHHHhhcCCCCCCCCCCCCCcHHHHHH
Q 014436 105 AKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM-EVVKILTREDPDYPYSANDYGKTPLYMAA 183 (424)
Q Consensus 105 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 183 (424)
...|+.+-++.+.+.- ....+...+++.+...|+. ++++.|.+.+.- .-+...|-
T Consensus 71 ~~tg~~e~L~kla~iA---------------~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA~~~A~ 126 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIA---------------QTREDFGSMLLNTFYNNSTKERSSIFAEGGSL---------PLAYAVAK 126 (177)
T ss_dssp HHHTCHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH---------------HHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHHHHHHH
Confidence 5566666655554321 1122333556677666776 566666643321 12556677
Q ss_pred hcCChHHHHHHHHh
Q 014436 184 ESESSDMVLTLLEN 197 (424)
Q Consensus 184 ~~~~~~~v~~Ll~~ 197 (424)
.+|..++.+.+++.
T Consensus 127 t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 127 ANGDEAAASAFLEQ 140 (177)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHH
Confidence 78888888877764
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=41.38 E-value=59 Score=25.06 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436 24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV 103 (424)
Q Consensus 24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~ 103 (424)
.++..=..|...|++++++....+ ..|..+-..|+ ...|+.+-++.+.+.- ....+....++.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~-----~~D~~~L~~Ly----~~tg~~e~L~kla~iA--------~~~g~~n~af~~ 98 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQT-----QHSFDKLSFLY----LVTGDVNKLSKMQNIA--------QTREDFGSMLLN 98 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----TTCHHHHHHHH----HHHTCHHHHHHHHHHH--------HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHH-----hCCHHHHHHHH----HHhCCHHHHHHHHHHH--------HHCccHHHHHHH
Confidence 344445567888999998888875 33333333343 4456666666665542 123344567788
Q ss_pred HHHcCcH-HHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhc
Q 014436 104 AAKFGHS-DIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163 (424)
Q Consensus 104 A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 163 (424)
+...|+. +.+++|.+.|... -+...|-.+|..++.+.+++.
T Consensus 99 ~l~lGdv~~~i~lL~~~~r~~-------------------eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 99 TFYNNSTKERSSIFAEGGSLP-------------------LAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHTCHHHHHHHHHHTTCHH-------------------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHCCChH-------------------HHHHHHHHcCcHHHHHHHHHH
Confidence 8888886 6778887766431 345677788999999888765
No 118
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=37.78 E-value=68 Score=28.15 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCchhHHHHHHHH---HHhhccccCCcchhhhhhhHHhhhccHHHHHHHH
Q 014436 28 KLLKAAADGNAEPFKDMAREVI---ESLLTLQTRNTILHINIMCQDAENASTKFVEEIL 83 (424)
Q Consensus 28 ~l~~A~~~g~~~~v~~ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~ 83 (424)
.+..+...++.+..+.++++-. -....|..|...+.-+ ...+..+....+++.+
T Consensus 45 ~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkl--l~~~~~~~~~~i~~~~ 101 (369)
T 3k49_A 45 FIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF--FEFGSKIQKNTLVDQF 101 (369)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHH--HHHCCHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHH--HHhCCHHHHHHHHHHH
Confidence 4777777787777777766421 1237777888888888 7777777666666654
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=33.76 E-value=58 Score=28.35 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=30.1
Q ss_pred HHHHHHcCCCchhHHHHHHHH---HHhhccccCCcchhhhhhhHHhhhccHHHHHHH
Q 014436 29 LLKAAADGNAEPFKDMAREVI---ESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82 (424)
Q Consensus 29 l~~A~~~g~~~~v~~ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~ 82 (424)
|......++.+..+.++++-. -....|..|...+.-. ...+..+....+++.
T Consensus 41 lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQkl--le~~~~~~~~~i~~~ 95 (351)
T 3gvo_A 41 IQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF--FEFGSLDQKLALATR 95 (351)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHH--HhhCCHHHHHHHHHH
Confidence 555556666665555555321 1225666777777766 666666666655554
No 120
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=26.09 E-value=26 Score=30.64 Aligned_cols=51 Identities=10% Similarity=-0.060 Sum_probs=23.4
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhhCCCc--cccccCCCCcHHHHHHHcCCcc
Q 014436 278 DRKMTALHLAAGRGHARTVETILSLAPEC--FELVDNRRWNFLHYAVASFQLQ 328 (424)
Q Consensus 278 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~~~~~ 328 (424)
..|...+......+..+..+.+++.-... .-..+..|...+.-+...+..+
T Consensus 215 ~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~ 267 (351)
T 3gvo_A 215 QYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 267 (351)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred chHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHH
Confidence 35555566666655555544444432110 0112344445555555555443
No 121
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=21.40 E-value=43 Score=29.44 Aligned_cols=26 Identities=4% Similarity=-0.049 Sum_probs=14.1
Q ss_pred cCCCCcHHHHHHHcCCccchHHhhhC
Q 014436 311 DNRRWNFLHYAVASFQLQDLKPLLRN 336 (424)
Q Consensus 311 ~~~g~t~l~~A~~~~~~~~~~~ll~~ 336 (424)
+..|...+..+...+..+.-+.+++.
T Consensus 261 ~k~gS~Vvek~l~~~~~~~r~~ii~~ 286 (369)
T 3k49_A 261 HKFASNVVEKSILYGSKNQKDLIISK 286 (369)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHHTT
T ss_pred hhHhhHHHHHHHHhCCHHHHHHHHHH
Confidence 44455556566666555555555543
Done!