BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014438
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
 pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
 pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
 pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
          Length = 391

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 16/209 (7%)

Query: 89  ESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTY 148
           E L R L+A+Y P+N Y +H+D +A      E +     + +     NV + S+   V Y
Sbjct: 97  EMLDRLLRAIYMPQNFYCIHVDRKA------EESFLAAVQGIASCFDNVFVASQLESVVY 150

Query: 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTS 208
              T V   L+    L++   +W + INLS  D+P+ T  +++  L       N      
Sbjct: 151 ASWTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKM 210

Query: 209 DIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCL 268
               +E  + +  ++D  L     + +   P     P    LF+GSA+ +++R ++ + L
Sbjct: 211 PPNKEERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVL 263

Query: 269 WGWDNLPRIVLMYYANFLSSPEGYFHTVI 297
              +N+ +  LM +A    SP+ +    I
Sbjct: 264 EN-ENIQK--LMEWAQDTYSPDEFLWATI 289


>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
           B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
 pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
           B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
 pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
 pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
 pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
 pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
          Length = 391

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 89  ESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTY 148
           E L R L+A+Y P+N Y +H+D +A      E +     + +     NV + S+   V Y
Sbjct: 97  EMLDRLLRAIYMPQNFYCIHVDRKA------EESFLAAVQGIASCFDNVFVASQLESVVY 150

Query: 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTS 208
              T V   L+    L++   +W + INL   D+P+ T  +++  L       N      
Sbjct: 151 ASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKM 210

Query: 209 DIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCL 268
               +E  + +  ++D  L     + +   P     P    LF+GSA+ +++R ++ + L
Sbjct: 211 PPNKEERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVL 263

Query: 269 WGWDNLPRIVLMYYANFLSSPEGYFHTVI 297
              +N+ +  LM +A    SP+ +    I
Sbjct: 264 EN-ENIQK--LMEWAQDTYSPDEFLWATI 289


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,132,805
Number of Sequences: 62578
Number of extensions: 530945
Number of successful extensions: 1118
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 8
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)