Query 014438
Match_columns 424
No_of_seqs 228 out of 868
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 3E-116 6E-121 900.1 36.7 406 13-424 5-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 4E-65 8.6E-70 528.5 20.5 330 73-422 100-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 7.1E-53 1.5E-57 404.8 17.7 238 77-337 1-244 (244)
4 TIGR03469 HonB hopene-associat 93.7 2.9 6.3E-05 43.1 16.1 114 73-194 38-155 (384)
5 TIGR03111 glyc2_xrt_Gpos1 puta 87.7 21 0.00045 37.6 15.8 96 72-184 46-145 (439)
6 TIGR03472 HpnI hopanoid biosyn 87.5 20 0.00044 36.6 15.2 106 74-196 40-150 (373)
7 PTZ00260 dolichyl-phosphate be 85.8 17 0.00037 36.8 13.5 112 71-195 66-188 (333)
8 cd02525 Succinoglycan_BP_ExoA 85.6 14 0.00029 34.3 11.8 99 76-194 1-103 (249)
9 PRK11204 N-glycosyltransferase 84.4 31 0.00066 35.6 14.9 101 73-193 52-155 (420)
10 PRK14716 bacteriophage N4 adso 82.7 19 0.00041 39.0 12.7 102 72-184 63-172 (504)
11 cd06439 CESA_like_1 CESA_like_ 77.0 44 0.00095 31.2 12.0 103 72-196 26-133 (251)
12 cd06421 CESA_CelA_like CESA_Ce 76.2 34 0.00073 31.4 10.9 104 75-196 1-108 (234)
13 COG1216 Predicted glycosyltran 75.7 19 0.00041 35.7 9.5 90 75-181 3-94 (305)
14 cd06437 CESA_CaSu_A2 Cellulose 74.4 22 0.00048 33.1 9.2 103 75-192 1-107 (232)
15 PRK07132 DNA polymerase III su 72.9 24 0.00052 35.6 9.5 94 74-179 16-128 (299)
16 PF13641 Glyco_tranf_2_3: Glyc 70.3 10 0.00022 35.0 5.7 113 75-205 1-120 (228)
17 cd04184 GT2_RfbC_Mx_like Myxoc 70.2 52 0.0011 29.4 10.4 104 75-194 1-108 (202)
18 cd04179 DPM_DPG-synthase_like 66.6 50 0.0011 29.0 9.3 107 80-205 2-113 (185)
19 PF00535 Glycos_transf_2: Glyc 66.1 32 0.00069 29.0 7.7 101 79-197 2-106 (169)
20 PF07521 RMMBL: RNA-metabolisi 65.6 4 8.8E-05 28.9 1.6 28 81-110 14-41 (43)
21 PF08660 Alg14: Oligosaccharid 65.2 65 0.0014 29.7 9.9 124 80-208 3-131 (170)
22 PRK14583 hmsR N-glycosyltransf 65.2 74 0.0016 33.4 11.7 93 74-184 74-169 (444)
23 PRK10063 putative glycosyl tra 64.7 1.4E+02 0.003 28.8 13.0 101 75-194 1-106 (248)
24 cd02520 Glucosylceramide_synth 63.5 69 0.0015 29.0 9.9 104 75-195 1-109 (196)
25 cd02511 Beta4Glucosyltransfera 63.5 78 0.0017 29.6 10.5 97 76-196 1-98 (229)
26 PRK05454 glucosyltransferase M 62.0 2.1E+02 0.0047 32.3 15.0 124 71-205 120-255 (691)
27 cd04187 DPM1_like_bac Bacteria 60.9 95 0.0021 27.3 10.1 96 80-195 2-103 (181)
28 PRK05917 DNA polymerase III su 60.7 51 0.0011 33.2 9.0 98 74-180 17-134 (290)
29 cd06434 GT2_HAS Hyaluronan syn 59.7 1.1E+02 0.0023 28.2 10.5 99 77-195 2-100 (235)
30 PRK11234 nfrB bacteriophage N4 58.4 77 0.0017 36.0 10.8 122 71-206 59-188 (727)
31 TIGR01556 rhamnosyltran L-rham 57.5 88 0.0019 30.1 9.9 82 87-184 6-87 (281)
32 cd06427 CESA_like_2 CESA_like_ 55.4 1.5E+02 0.0032 27.8 10.9 102 75-194 1-106 (241)
33 COG0848 ExbD Biopolymer transp 53.2 1.7E+02 0.0036 26.1 10.8 51 87-141 80-132 (137)
34 PRK06871 DNA polymerase III su 52.5 83 0.0018 32.1 9.0 81 92-180 65-146 (325)
35 cd02526 GT2_RfbF_like RfbF is 52.5 1.3E+02 0.0029 27.5 9.9 96 80-194 2-97 (237)
36 PRK10073 putative glycosyl tra 51.3 1.2E+02 0.0027 30.5 10.1 93 74-184 5-99 (328)
37 cd04192 GT_2_like_e Subfamily 50.7 1.5E+02 0.0032 26.8 9.8 99 80-195 2-105 (229)
38 PRK06581 DNA polymerase III su 49.7 1.5E+02 0.0032 29.5 9.8 98 74-180 13-128 (263)
39 cd04186 GT_2_like_c Subfamily 48.5 1.7E+02 0.0036 24.7 9.6 92 80-194 2-96 (166)
40 PRK07276 DNA polymerase III su 48.4 1.2E+02 0.0027 30.4 9.4 25 74-98 22-46 (290)
41 PRK05818 DNA polymerase III su 48.2 95 0.0021 30.8 8.4 81 93-180 47-127 (261)
42 KOG3339 Predicted glycosyltran 47.1 2.6E+02 0.0057 26.6 11.4 113 77-195 40-158 (211)
43 PLN02726 dolichyl-phosphate be 47.1 2.5E+02 0.0054 26.3 12.6 106 73-195 7-116 (243)
44 TIGR03030 CelA cellulose synth 46.5 4.3E+02 0.0092 29.9 14.3 115 73-204 129-262 (713)
45 PRK07414 cob(I)yrinic acid a,c 43.5 2.8E+02 0.0061 25.9 10.4 106 88-204 36-152 (178)
46 PRK07993 DNA polymerase III su 41.4 1.9E+02 0.0041 29.5 9.7 99 74-180 22-147 (334)
47 cd02510 pp-GalNAc-T pp-GalNAc- 40.8 1.5E+02 0.0033 28.8 8.7 99 79-194 2-105 (299)
48 cd06423 CESA_like CESA_like is 40.8 2.1E+02 0.0046 23.7 9.3 95 80-193 2-99 (180)
49 PF12273 RCR: Chitin synthesis 40.6 21 0.00046 31.2 2.3 18 17-34 1-18 (130)
50 PRK08058 DNA polymerase III su 40.2 2.1E+02 0.0046 28.9 9.8 97 74-179 26-148 (329)
51 cd06913 beta3GnTL1_like Beta 1 38.8 3E+02 0.0064 25.1 9.9 95 80-185 2-99 (219)
52 PF07747 MTH865: MTH865-like f 38.7 16 0.00035 29.4 1.2 19 177-195 11-29 (75)
53 cd04196 GT_2_like_d Subfamily 37.6 2.9E+02 0.0064 24.5 10.6 99 79-195 2-102 (214)
54 cd06442 DPM1_like DPM1_like re 37.2 2.5E+02 0.0055 25.3 9.1 97 80-195 2-101 (224)
55 cd00761 Glyco_tranf_GTA_type G 36.9 2.2E+02 0.0048 22.9 9.7 89 80-185 2-92 (156)
56 COG3618 Predicted metal-depend 36.5 1.8E+02 0.0039 29.3 8.3 100 74-189 137-244 (279)
57 cd04185 GT_2_like_b Subfamily 35.2 3.3E+02 0.0071 24.3 9.8 89 80-184 2-93 (202)
58 PRK15489 nfrB bacteriophage N4 33.9 2.9E+02 0.0063 31.4 10.3 117 72-205 68-195 (703)
59 PF11051 Mannosyl_trans3: Mann 32.1 1.5E+02 0.0033 29.1 7.1 100 79-191 4-111 (271)
60 cd04188 DPG_synthase DPG_synth 31.7 2.1E+02 0.0045 26.0 7.5 97 80-195 2-105 (211)
61 PRK10714 undecaprenyl phosphat 31.0 5.6E+02 0.012 25.7 12.4 107 73-197 4-115 (325)
62 PF02572 CobA_CobO_BtuR: ATP:c 30.6 3.5E+02 0.0075 25.1 8.7 106 89-204 19-133 (172)
63 cd02514 GT13_GLCNAC-TI GT13_GL 30.6 4.3E+02 0.0094 27.1 10.2 97 77-185 2-112 (334)
64 PRK05707 DNA polymerase III su 29.5 4.4E+02 0.0095 26.8 10.1 100 74-181 20-146 (328)
65 PRK05564 DNA polymerase III su 28.9 4.8E+02 0.01 25.9 10.2 98 74-179 24-131 (313)
66 cd02537 GT8_Glycogenin Glycoge 26.5 4.8E+02 0.01 24.9 9.3 108 77-193 1-112 (240)
67 cd02522 GT_2_like_a GT_2_like_ 25.5 4.9E+02 0.011 23.3 9.2 91 78-194 2-94 (221)
68 TIGR00824 EIIA-man PTS system, 25.4 4.2E+02 0.0092 22.5 8.3 94 77-185 2-97 (116)
69 COG4746 Uncharacterized protei 25.0 42 0.0009 27.1 1.3 18 178-195 17-34 (80)
70 cd06436 GlcNAc-1-P_transferase 24.9 4.6E+02 0.01 23.5 8.6 95 80-184 2-103 (191)
71 cd06435 CESA_NdvC_like NdvC_li 24.4 5.5E+02 0.012 23.4 10.9 103 79-196 2-108 (236)
72 TIGR02803 ExbD_1 TonB system t 24.1 4.5E+02 0.0097 22.3 10.3 49 88-140 69-119 (122)
73 PRK11498 bcsA cellulose syntha 24.0 8E+02 0.017 28.6 11.8 112 73-205 258-374 (852)
74 PRK08309 short chain dehydroge 23.3 5.8E+02 0.013 23.3 10.1 83 87-180 32-114 (177)
75 cd00006 PTS_IIA_man PTS_IIA, P 22.6 4.8E+02 0.01 22.1 8.0 92 79-185 3-96 (122)
76 cd06438 EpsO_like EpsO protein 22.1 5.5E+02 0.012 22.6 11.0 98 80-194 2-103 (183)
77 PRK08769 DNA polymerase III su 21.7 5.1E+02 0.011 26.4 8.8 23 158-180 130-152 (319)
78 cd04195 GT2_AmsE_like GT2_AmsE 21.2 5.7E+02 0.012 22.5 10.8 90 79-185 2-95 (201)
79 PF13177 DNA_pol3_delta2: DNA 21.1 5.5E+02 0.012 23.0 8.1 98 74-180 17-141 (162)
80 PRK05986 cob(I)alamin adenolsy 20.8 7.2E+02 0.016 23.5 11.0 105 89-204 38-152 (191)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2.9e-116 Score=900.11 Aligned_cols=406 Identities=59% Similarity=1.064 Sum_probs=373.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhh----cC---CCccccccc-cccCCCCCcccchhhhccC---CCCCCCCcEEEEE
Q 014438 13 QKKQKWFFSLVFSLLLSTILIIISVS----MS---STSTKFYNR-AYVQTPRPRFVEQQLQVVS---TSSEKIPRLAYLI 81 (424)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~kiAYlI 81 (424)
..++||++|++++++++++|+++++. ++ +++.+.+.+ ...+++.+.|+|+++.+.+ +.++.|||+||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI 84 (421)
T PLN03183 5 NVEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLV 84 (421)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEE
Confidence 47899999999999999888665541 11 112222222 2335556678998877543 2333489999999
Q ss_pred EecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHHHHH
Q 014438 82 SGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAA 161 (424)
Q Consensus 82 l~hk~d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~ 161 (424)
+||+||.++++|||++||||+|+||||+|+||+..++.+++..++++|++.+++||+|+++++.|+|||+|||+|||+||
T Consensus 85 ~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m 164 (421)
T PLN03183 85 SGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHAC 164 (421)
T ss_pred EecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHH
Confidence 99988999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHcCCCccEEEEecCCcccccchhHHHHHhccCCCCcceEeeccCCCCeeeeeccceeeCCCccccccccceecccc
Q 014438 162 AILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEK 241 (424)
Q Consensus 162 ~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~~~~~~nFIe~~~~~~wk~~~R~~~ii~dpgly~~~k~~~~~~~~~ 241 (424)
+.||+...+|||||||||+||||+||+||++.|+++|+|+|||+|++..+|++.+|+++++++||+|..+++.++|.+++
T Consensus 165 ~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~ 244 (421)
T PLN03183 165 AILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPR 244 (421)
T ss_pred HHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhh
Confidence 99999889999999999999999999998888888899999999998899999999999999999999888888999999
Q ss_pred CCCCCcceeeeeceEEEecHHHHHHhhhccCCcHHHHHHHhccCCCCCCcchhhhhcccccCccceecCceeEEecCCCC
Q 014438 242 RNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPP 321 (424)
Q Consensus 242 R~~P~~~~l~~GSqW~~LsR~fvey~i~~~dnlpr~ll~yf~~~~~pDE~yFqTvl~Ns~~f~~t~vn~~LRyi~W~~~~ 321 (424)
|.+|+++++|+||+|++|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|++++
T Consensus 245 R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~ 324 (421)
T PLN03183 245 RSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPP 324 (421)
T ss_pred ccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCHhHHHHHhcCCCcEEeccCCChhHHHHHHHHHhCCCCCCccCCceecccCCCCCCCCccccCCCCcccCCch
Q 014438 322 KQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAG 401 (424)
Q Consensus 322 ~~hP~~lt~~D~~~L~~S~alFARKF~~dd~vLd~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~~c~~~g~~~~~~pg~~ 401 (424)
++||++|+.+|+++|++|+++|||||+.|++|||+||++|++|.+++++|||||.| .||||+|||+++||||||
T Consensus 325 ~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~------~~~c~~~~~~~~~~p~~~ 398 (421)
T PLN03183 325 KQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG------KPKCSRVGDPAKIKPGPG 398 (421)
T ss_pred CCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC------CCcccccCCcCccCCCcH
Confidence 89999999999999999999999999999999999999999999999999999987 489999999999999999
Q ss_pred HHHHHHHHHhhcccccccCCCCC
Q 014438 402 AERIKRLITGLISAEDFHAKHCI 424 (424)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~c~ 424 (424)
|+||++||++||++++||++||+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 399 AQRLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred HHHHHHHHHHHhchhccccccCC
Confidence 99999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-65 Score=528.53 Aligned_cols=330 Identities=45% Similarity=0.762 Sum_probs=305.3
Q ss_pred CCC-cEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCc
Q 014438 73 KIP-RLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGP 151 (424)
Q Consensus 73 ~~~-kiAYlIl~hk~d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 151 (424)
.++ .+||+.++|+ |.++++|+|+|+|||+|.||||||++|+++++..++. +..|++||+|++++..|+|||+
T Consensus 100 ~~~~~~a~~~~v~k-d~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~~G~ 172 (439)
T KOG0799|consen 100 LKPFPAAFLRVVYK-DYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTYGGH 172 (439)
T ss_pred ccccceEEEEeecc-cHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceecCCc
Confidence 355 4555555555 9999999999999999999999999999999976653 5679999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhccCCCCcceEeeccCCCCeeeeeccceeeCCCccccc
Q 014438 152 TMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQ 231 (424)
Q Consensus 152 S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~~~~~~nFIe~~~~~~wk~~~R~~~ii~dpgly~~~ 231 (424)
|+++|+|+||+.|++.+.+|||||||||+||||||++||+++|+.+ +|.|||+++...+|+..++.++.+.+++ |+.+
T Consensus 173 s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~~~ 250 (439)
T KOG0799|consen 173 SILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YFRN 250 (439)
T ss_pred hhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hhee
Confidence 9999999999999999889999999999999999999999999987 7999999999999999999999999998 7888
Q ss_pred cccceeccccCCCCCcceeeeeceEEEecHHHHHHhhhccCCcHHHHHHHhccCCCCCCcchhhhhcccccCccceecCc
Q 014438 232 KSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHD 311 (424)
Q Consensus 232 k~~~~~~~~~R~~P~~~~l~~GSqW~~LsR~fvey~i~~~dnlpr~ll~yf~~~~~pDE~yFqTvl~Ns~~f~~t~vn~~ 311 (424)
++.+.|.+ +|++|++++||.|++|||+|||||+.+ ++|+++++||+++++|||+||||++||+ |..+.++++
T Consensus 251 ~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~~--~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~~~~ 322 (439)
T KOG0799|consen 251 KSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLISG--NLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGVFND 322 (439)
T ss_pred cCCCcccc----CCCceEEEecceeEEEeHHHHHHHhcC--ccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCcccc
Confidence 88888755 999999999999999999999999995 8999999999999999999999999998 888889999
Q ss_pred --eeEEecCC----CCCCCCCCCCHhHHHHHhcCCC-cEEeccC--CChhHHHHHHHHHhCCCCCCccCCceecccCCCC
Q 014438 312 --LHFISWDN----PPKQHPHFLNVDDYQRMVDSNA-PFARKFG--RNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSN 382 (424)
Q Consensus 312 --LRyi~W~~----~~~~hP~~lt~~D~~~L~~S~a-lFARKF~--~dd~vLd~Id~~ll~r~~~~~~~g~w~~~~~~~~ 382 (424)
+||+.|+. ++++||+.++..|...|..++. .|||||. .++++++++|.+++++.....++|+|| .+..
T Consensus 323 ~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~---~~~~ 399 (439)
T KOG0799|consen 323 ECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWC---DHSL 399 (439)
T ss_pred hhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCccccc---cccc
Confidence 99999998 6788999999999999999998 9999999 589999999999999888888999999 4456
Q ss_pred CCCCccccCCCCcccCCchHHHHHHHHHhhcccccccCCC
Q 014438 383 LTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKH 422 (424)
Q Consensus 383 ~~~~c~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 422 (424)
.+++|+..|+...+.|||++.|++.++..++..++|+..|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 400 RTLPCSELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred ccccccccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 6799999999999999999999999999999999999876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=7.1e-53 Score=404.75 Aligned_cols=238 Identities=35% Similarity=0.573 Sum_probs=159.9
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 77 LAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 77 iAYlIl~hk~d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
|||||++|+++++++++|++++|||+|.|+||||+|++...+.+++.. ..+++||+++++|..|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~------~~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKL------ISCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHH------HCT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHh------cccCCceeecccccccccCCccHHHH
Confidence 799999999899999999999999999999999999998888877654 35889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhccCCCCcceEeeccCCCCeeeeeccceeeCCCccccccccce
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVF 236 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~~~~~~nFIe~~~~~~wk~~~R~~~ii~dpgly~~~k~~~~ 236 (424)
||.||+.|++.+.+|||||||||+||||+|+++|.++|+..+.+.+|+++....++....|+.+...++..+...
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~----- 149 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFR----- 149 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEE-----
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccc-----
Confidence 999999999976789999999999999999999999999876778999987665543224443332222221111
Q ss_pred eccccCCCCCcceeeeeceEEEecHHHHHHhhhccCCcHHHHHH-HhccCCCCCCcchhhhhcccccCccceecCceeEE
Q 014438 237 WVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLM-YYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFI 315 (424)
Q Consensus 237 ~~~~~R~~P~~~~l~~GSqW~~LsR~fvey~i~~~dnlpr~ll~-yf~~~~~pDE~yFqTvl~Ns~~f~~t~vn~~LRyi 315 (424)
++ ++|+|||||+|||++|+|++. |..+....+ |++++++|||.|||||++|+++|.++++++++|||
T Consensus 150 ----~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 150 ----KR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp ----EE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred ----cc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 11 899999999999999999995 444444444 44599999999999999999889999999999999
Q ss_pred ecCCCCCCCCCC-----CCHhHHHHHh
Q 014438 316 SWDNPPKQHPHF-----LNVDDYQRMV 337 (424)
Q Consensus 316 ~W~~~~~~hP~~-----lt~~D~~~L~ 337 (424)
+|++..++||++ ++++|+++|+
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 999555677754 5778888774
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.66 E-value=2.9 Score=43.10 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=69.7
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccc-eeeee
Q 014438 73 KIPRLAYLISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKA-NLVTY 148 (424)
Q Consensus 73 ~~~kiAYlIl~hk~d~~~l~rLl~aLyh---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r-~~V~W 148 (424)
..|++..+|-+++ ..+.+.++|+.|.. |.+.=+|-+|..|++...+.++++.+..| ..++++++... ....|
T Consensus 38 ~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 38 AWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCCCC
Confidence 3578999999998 67999999999853 43445677888777665554444332211 12378887532 23456
Q ss_pred cCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 149 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
+|- ..|.-++++.+-+...+-||++.+-+.+.+ +.+.|.+.+
T Consensus 114 ~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~--~p~~l~~lv 155 (384)
T TIGR03469 114 SGK--LWAVSQGIAAARTLAPPADYLLLTDADIAH--GPDNLARLV 155 (384)
T ss_pred cch--HHHHHHHHHHHhccCCCCCEEEEECCCCCC--ChhHHHHHH
Confidence 553 344445555554333336899998888875 344444433
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=87.68 E-value=21 Score=37.56 Aligned_cols=96 Identities=10% Similarity=0.155 Sum_probs=58.4
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEE-EEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeee
Q 014438 72 EKIPRLAYLISGSTGDGESLKRTLKALY---HPRNQY-AVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVT 147 (424)
Q Consensus 72 ~~~~kiAYlIl~hk~d~~~l~rLl~aLy---hP~n~y-~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~ 147 (424)
.+.|+++.+|-+|+ ..+.+.++++++. .|...+ +|=+|..++++..+.++.+. ..++++.+..... .
T Consensus 46 ~~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~--~ 116 (439)
T TIGR03111 46 GKLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNS--D 116 (439)
T ss_pred CCCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCC--C
Confidence 34578999999999 5789999988874 354433 66678777766544443332 2356776642111 1
Q ss_pred ecCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccc
Q 014438 148 YRGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPL 184 (424)
Q Consensus 148 Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL 184 (424)
+|.+ .|+..+++.. .-||++.+-+.+.|-
T Consensus 117 -~Gka------~AlN~gl~~s-~g~~v~~~DaD~~~~ 145 (439)
T TIGR03111 117 -QGKA------KALNAAIYNS-IGKYIIHIDSDGKLH 145 (439)
T ss_pred -CCHH------HHHHHHHHHc-cCCEEEEECCCCCcC
Confidence 3432 1222333332 357899998888873
No 6
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=87.46 E-value=20 Score=36.64 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=61.1
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccc--eEEeccceeeee
Q 014438 74 IPRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGN--VRMVSKANLVTY 148 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~~l~rLl~aLy---hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~N--V~vv~~r~~V~W 148 (424)
.|++..+|-+++ ..+.+.+.|+.+- .|+..++| +|..+++...+-++.+.+ .+++ |+++.......|
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~------~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRA------DFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHH------hCCCCceEEEECCCCCCC
Confidence 467999999998 4677888887773 36656665 666665544443433322 3555 555643332233
Q ss_pred cCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhcc
Q 014438 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLST 196 (424)
Q Consensus 149 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~ 196 (424)
.+ -+.+..++ ++. .+.||++.+-+.+.| +.+-|.+....
T Consensus 112 ~~--K~~~l~~~----~~~-a~ge~i~~~DaD~~~--~p~~L~~lv~~ 150 (373)
T TIGR03472 112 NR--KVSNLINM----LPH-ARHDILVIADSDISV--GPDYLRQVVAP 150 (373)
T ss_pred Ch--HHHHHHHH----HHh-ccCCEEEEECCCCCc--ChhHHHHHHHH
Confidence 22 33333333 232 246888888887766 56666555443
No 7
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=85.77 E-value=17 Score=36.83 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=60.2
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcC---------CC-CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEe
Q 014438 71 SEKIPRLAYLISGSTGDGESLKRTLKALYH---------PR-NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMV 140 (424)
Q Consensus 71 ~~~~~kiAYlIl~hk~d~~~l~rLl~aLyh---------P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv 140 (424)
..+.+.+..+|-+++ ..+.+.++++.+.. |. +.=+|=||-.|++...+.++.+.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 446789999999999 57888888877642 22 344666777776654444444332110 011357777
Q ss_pred ccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCCcc-cccchhHHHHHhc
Q 014438 141 SKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSASDY-PLVTQDDLLHVLS 195 (424)
Q Consensus 141 ~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDy-PL~t~ddi~~~ls 195 (424)
..... .|. -.|.-.+++.+ .-||++++-+.+. +....+.+.+.+.
T Consensus 143 ~~~~N---~G~--~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRN---KGK--GGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCC---CCh--HHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53221 122 23333333322 2378887776653 3333444555553
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.59 E-value=14 Score=34.26 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=59.7
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHc---CC-CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCc
Q 014438 76 RLAYLISGSTGDGESLKRTLKALY---HP-RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGP 151 (424)
Q Consensus 76 kiAYlIl~hk~d~~~l~rLl~aLy---hP-~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 151 (424)
+++.+|.+++ +.+.+.++|+.+. .| .+.=+|=+|..++++....++.+. ...++|+++..... |.
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~------~~~~~v~~i~~~~~----~~ 69 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA------AKDPRIRLIDNPKR----IQ 69 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH------hcCCeEEEEeCCCC----Cc
Confidence 4678888888 6888998888884 22 233355556666655444444432 23567888864421 21
Q ss_pred hHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 152 TMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 152 S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
-.|--.+++.+ ..||++.+.+.|.+ +.+.|...+
T Consensus 70 --~~a~N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 70 --SAGLNIGIRNS-----RGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred --hHHHHHHHHHh-----CCCEEEEECCCccC--CHHHHHHHH
Confidence 12333333322 47999999999986 555555555
No 9
>PRK11204 N-glycosyltransferase; Provisional
Probab=84.38 E-value=31 Score=35.60 Aligned_cols=101 Identities=13% Similarity=0.227 Sum_probs=61.0
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeec
Q 014438 73 KIPRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYR 149 (424)
Q Consensus 73 ~~~kiAYlIl~hk~d~~~l~rLl~aLy---hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 149 (424)
..|+++.+|-+|+ ..+.+.+.++++. .|+..++| +|..+++...+.++.+. ...+++.++.... .+
T Consensus 52 ~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~eiiV-vdD~s~d~t~~~l~~~~------~~~~~v~~i~~~~---n~ 120 (420)
T PRK11204 52 EYPGVSILVPCYN-EGENVEETISHLLALRYPNYEVIA-INDGSSDNTGEILDRLA------AQIPRLRVIHLAE---NQ 120 (420)
T ss_pred CCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHHH------HhCCcEEEEEcCC---CC
Confidence 4578999999999 5788888888774 45445555 56556555444444332 2457888876222 12
Q ss_pred CchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHH
Q 014438 150 GPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHV 193 (424)
Q Consensus 150 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ 193 (424)
| ...| +..+++. .+.||++.+-+.+.| +.+-|.+.
T Consensus 121 G--ka~a----ln~g~~~-a~~d~i~~lDaD~~~--~~d~L~~l 155 (420)
T PRK11204 121 G--KANA----LNTGAAA-ARSEYLVCIDGDALL--DPDAAAYM 155 (420)
T ss_pred C--HHHH----HHHHHHH-cCCCEEEEECCCCCC--ChhHHHHH
Confidence 3 2222 2233332 357999999988877 34444333
No 10
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=82.66 E-value=19 Score=39.00 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=61.8
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeee
Q 014438 72 EKIPRLAYLISGSTGDGESLKRTLKA----LYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVT 147 (424)
Q Consensus 72 ~~~~kiAYlIl~hk~d~~~l~rLl~a----LyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~ 147 (424)
.+.|+++.+|-+|+ ..+.+.++|+. ++.|+-.++|=.|.. ++.....++.. ...++||+++..+.
T Consensus 63 ~~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~n-dd~T~~~v~~l------~~~~p~v~~vv~~~--- 131 (504)
T PRK14716 63 VPEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYPN-DPATLREVDRL------AARYPRVHLVIVPH--- 131 (504)
T ss_pred CCCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECCC-ChhHHHHHHHH------HHHCCCeEEEEeCC---
Confidence 34789999999999 67777777764 334665666655543 33333333332 23578888653221
Q ss_pred ecCchHHHHHHHHHHHHHH----cCCCccEEEEecCCcccc
Q 014438 148 YRGPTMVTNTLHAAAILFK----EGGDWDWFINLSASDYPL 184 (424)
Q Consensus 148 Wgg~S~V~AtL~~~~~lL~----~~~~wd~fi~LSgsDyPL 184 (424)
-|+.+-..|--.+++.+.. .+.++|+++.+-+.|.|=
T Consensus 132 ~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~ 172 (504)
T PRK14716 132 DGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIH 172 (504)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcC
Confidence 1334555555555555432 234689999999888854
No 11
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=76.95 E-value=44 Score=31.23 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHcC---CC--CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceee
Q 014438 72 EKIPRLAYLISGSTGDGESLKRTLKALYH---PR--NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLV 146 (424)
Q Consensus 72 ~~~~kiAYlIl~hk~d~~~l~rLl~aLyh---P~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V 146 (424)
.+.|+++.+|.+++ +.+.|.++|+.+.. |. ..++|..|...+ .....++.+. .. +|.++....
T Consensus 26 ~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d-~t~~~~~~~~-------~~-~v~~i~~~~-- 93 (251)
T cd06439 26 AYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTD-GTAEIAREYA-------DK-GVKLLRFPE-- 93 (251)
T ss_pred CCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCc-cHHHHHHHHh-------hC-cEEEEEcCC--
Confidence 34678999999999 67888888888742 33 356666666443 3333333221 11 677764322
Q ss_pred eecCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhcc
Q 014438 147 TYRGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLST 196 (424)
Q Consensus 147 ~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~ 196 (424)
..| ...|--.+++.+ . -||++++-+.+.|- .+.+.+.+..
T Consensus 94 -~~g--~~~a~n~gi~~a----~-~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 94 -RRG--KAAALNRALALA----T-GEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred -CCC--hHHHHHHHHHHc----C-CCEEEEEccccCcC--HHHHHHHHHH
Confidence 123 334444444432 2 39999999999985 5556555544
No 12
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=76.16 E-value=34 Score=31.36 Aligned_cols=104 Identities=23% Similarity=0.178 Sum_probs=56.8
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCC-EEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecC
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYH---PRN-QYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRG 150 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyh---P~n-~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 150 (424)
|++..+|-+++.+.+.++++|+.+-. |.. .=+|=+|-.+++...+-++.+.. . .++.++... ..+|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~------~-~~~~~~~~~--~~~~~ 71 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGV------E-YGYRYLTRP--DNRHA 71 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhc------c-cCceEEEeC--CCCCC
Confidence 46788888988545778888887742 331 22444676666654444433211 1 144444322 23343
Q ss_pred chHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhcc
Q 014438 151 PTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLST 196 (424)
Q Consensus 151 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~ 196 (424)
.. .+.-.|++.+ .-||++.+.+.|++ ..+.|...++.
T Consensus 72 ~~--~~~n~~~~~a-----~~d~i~~lD~D~~~--~~~~l~~l~~~ 108 (234)
T cd06421 72 KA--GNLNNALAHT-----TGDFVAILDADHVP--TPDFLRRTLGY 108 (234)
T ss_pred cH--HHHHHHHHhC-----CCCEEEEEccccCc--CccHHHHHHHH
Confidence 22 1112222222 46899999999988 44566555543
No 13
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=75.66 E-value=19 Score=35.69 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=60.4
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCCCCEE--EEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCch
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYHPRNQY--AVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPT 152 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyhP~n~y--~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S 152 (424)
++++.+|..|. ..+.+...|..|....... +|=+|..+++.....++.. .+++|.++.......|+|--
T Consensus 3 ~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~--------~~~~v~~i~~~~NlG~agg~ 73 (305)
T COG1216 3 PKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR--------FFPNVRLIENGENLGFAGGF 73 (305)
T ss_pred cceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh--------cCCcEEEEEcCCCccchhhh
Confidence 67888899999 6888888888886433333 3346888877766555431 17899999877666665543
Q ss_pred HHHHHHHHHHHHHHcCCCccEEEEecCCc
Q 014438 153 MVTNTLHAAAILFKEGGDWDWFINLSASD 181 (424)
Q Consensus 153 ~V~AtL~~~~~lL~~~~~wd~fi~LSgsD 181 (424)
. .+++.++....+ ++++-..|
T Consensus 74 n-----~g~~~a~~~~~~---~~l~LN~D 94 (305)
T COG1216 74 N-----RGIKYALAKGDD---YVLLLNPD 94 (305)
T ss_pred h-----HHHHHHhcCCCc---EEEEEcCC
Confidence 3 577778775432 45555666
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=74.41 E-value=22 Score=33.05 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=56.7
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecC
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYH---PR-NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRG 150 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyh---P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 150 (424)
|++..+|.+|+ ..+.|.++|++|.. |. ..-+|=+|. +++.....++...+..+ ....+|.++...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 46889999999 68999999999853 33 233555786 65554444444322110 112355544322221 2
Q ss_pred chHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHH
Q 014438 151 PTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLH 192 (424)
Q Consensus 151 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~ 192 (424)
+. ..| +...++. .+-+|++++-+.+++ ..+-|.+
T Consensus 74 ~k-~~a----~n~g~~~-a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 YK-AGA----LAEGMKV-AKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred Cc-hHH----HHHHHHh-CCCCEEEEEcCCCCC--ChHHHHH
Confidence 21 111 1122222 246899999998886 4445544
No 15
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=72.92 E-value=24 Score=35.56 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHH-----------cCCCCEEEEEEc--CCC-CHHHHHHHHHhhccCCccc---cc
Q 014438 74 IPRLAYLISGSTGDG--ESLKRTLKAL-----------YHPRNQYAVHLD--LEA-PVEERLELARFVESEPLFV---NV 134 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~--~~l~rLl~aL-----------yhP~n~y~IHvD--~ks-~~~~~~~L~~~v~~~~~~~---~~ 134 (424)
...+|||+.|..|-. .....+.+++ .||+|.+++ | .+. +.++ +....+..+... .-
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~--d~~g~~i~vd~---Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF--DIFDKDLSKSE---FLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe--ccCCCcCCHHH---HHHHHHHhccCCcccCC
Confidence 478999999988643 3445555565 366665554 7 332 2233 333333222222 24
Q ss_pred cceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecC
Q 014438 135 GNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSA 179 (424)
Q Consensus 135 ~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 179 (424)
..|.++.+. -.|-.+...++-..++++++..+||+++.
T Consensus 91 ~KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 91 KKILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ceEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 566666653 23333444455566777888999999876
No 16
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=70.25 E-value=10 Score=35.01 Aligned_cols=113 Identities=21% Similarity=0.282 Sum_probs=53.3
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHhhccCCcccccc--ceEEeccceeeeec
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVG--NVRMVSKANLVTYR 149 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyh---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~--NV~vv~~r~~V~Wg 149 (424)
|+++.+|.+++ ..+.+.++|+++-+ |+-.++| +|..++.+..+.+++..+ .++ .|+++..... .
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~~---~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAA------RYPRVRVRVIRRPRN---P 69 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHH------TTGG-GEEEEE-------H
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHH------HcCCCceEEeecCCC---C
Confidence 57999999988 68899999999864 5545555 554444332333333222 233 3566543211 1
Q ss_pred Cc-hHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhccC-CCCcceEe
Q 014438 150 GP-TMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTI-PRNLNFIE 205 (424)
Q Consensus 150 g~-S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~~-~~~~nFIe 205 (424)
|. +...|.-++++.+ ..||++.|-+.+.| ..+-|...+... ..+...+.
T Consensus 70 g~~~k~~a~n~~~~~~-----~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNEALAAA-----RGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHHHHHhc-----CCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 22 3334444444432 37899999888887 444444433222 34555554
No 17
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=70.22 E-value=52 Score=29.38 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHH-HHhhccCCccccccceEEeccceeeeecCc
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYHP--RNQYAVHLDLEAPVEERLEL-ARFVESEPLFVNVGNVRMVSKANLVTYRGP 151 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyhP--~n~y~IHvD~ks~~~~~~~L-~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 151 (424)
|++.++|.+++.+.+.+.++|+.|..- .+.-+|=+|..+++..-.++ +.+.+ ..+++.++.... -.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~------~~~~~~~~~~~~---~~g- 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAA------QDPRIKVVFREE---NGG- 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHh------cCCCEEEEEccc---CCC-
Confidence 468889999994338999999888531 12234555555544322222 22221 235666653221 122
Q ss_pred hHHHHHHHHHHHHHHcCCCccEEEEecCCcccccc-hhHHHHHh
Q 014438 152 TMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVL 194 (424)
Q Consensus 152 S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t-~ddi~~~l 194 (424)
...|--.+++.+ .-||+..+.+.|.+-.. .+.+.+.+
T Consensus 71 -~~~a~n~g~~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 71 -ISAATNSALELA-----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred -HHHHHHHHHHhh-----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 234444444432 34899999888876322 23444444
No 18
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=66.56 E-value=50 Score=28.98 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=59.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCC----CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHH
Q 014438 80 LISGSTGDGESLKRTLKALYHP----RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVT 155 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyhP----~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 155 (424)
+|.+|+ ..+.+.++|+.+..- .+.=+|=+|..+++.....++.+.. ..+.++++..... .+...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~------~~~~~~~~~~~~n-----~G~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA------RVPRVRVIRLSRN-----FGKGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH------hCCCeEEEEccCC-----CCccH
Confidence 466777 678888888887532 2444666776666555555554432 3344444422211 12334
Q ss_pred HHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhcc-CCCCcceEe
Q 014438 156 NTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLST-IPRNLNFIE 205 (424)
Q Consensus 156 AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~-~~~~~nFIe 205 (424)
|...+++.+ .. ||++.|.+.|.+ +.+.|...++. ...+.+.+-
T Consensus 70 a~n~g~~~a----~g-d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 70 AVRAGFKAA----RG-DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHHh----cC-CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 444444433 22 899999988875 56666666553 233445543
No 19
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=66.06 E-value=32 Score=28.99 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=61.3
Q ss_pred EEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHH
Q 014438 79 YLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVT 155 (424)
Q Consensus 79 YlIl~hk~d~~~l~rLl~aLy---hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 155 (424)
.+|.+++ ..+.|.++|..|- ++...++| +|-.+++...+.++.+.+ ...++.++...... ..-.
T Consensus 2 vvip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n~-----g~~~ 68 (169)
T PF00535_consen 2 VVIPTYN-EAEYLERTLESLLKQTDPDFEIIV-VDDGSTDETEEILEEYAE------SDPNIRYIRNPENL-----GFSA 68 (169)
T ss_dssp EEEEESS--TTTHHHHHHHHHHHSGCEEEEEE-EECS-SSSHHHHHHHHHC------CSTTEEEEEHCCCS-----HHHH
T ss_pred EEEEeeC-CHHHHHHHHHHHhhccCCCEEEEE-eccccccccccccccccc------cccccccccccccc-----cccc
Confidence 3566777 5788888888764 24455555 555555555555555432 35688888654321 3444
Q ss_pred HHHHHHHHHHHcCCCccEEEEecCCcccccc-hhHHHHHhccC
Q 014438 156 NTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLSTI 197 (424)
Q Consensus 156 AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t-~ddi~~~ls~~ 197 (424)
+.-.+++.+. -+|+..+.+.|++... .+++...+...
T Consensus 69 ~~n~~~~~a~-----~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 69 ARNRGIKHAK-----GEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp HHHHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred cccccccccc-----eeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 5555555442 3499999999998887 77788887763
No 20
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=65.58 E-value=4 Score=28.93 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=23.8
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEEEc
Q 014438 81 ISGSTGDGESLKRTLKALYHPRNQYAVHLD 110 (424)
Q Consensus 81 Il~hk~d~~~l~rLl~aLyhP~n~y~IHvD 110 (424)
.+||. |.+.|..+++.+ .|++.++||=|
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe 41 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGE 41 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSE
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCC
Confidence 45788 899999999999 79999999965
No 21
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=65.24 E-value=65 Score=29.65 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=74.4
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHH
Q 014438 80 LISGSTGDGESLKRTLKAL----YHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVT 155 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aL----yhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 155 (424)
+|+++.|-..+|.+|++.+ ++++.+++=.-|..+... -.++........-+...+..+-+++.. .+.=++++.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k-~~~~~~~~~~~~~~~~~~r~r~v~q~~--~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSK-AEQLEKSSSKRHKILEIPRAREVGQSY--LTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHH-HHHHHHhccccceeeccceEEEechhh--HhhHHHHHH
Confidence 5667777789999999999 655444444444433221 122322111100122345555444332 233478889
Q ss_pred HHHHHHHHHHHcCCCccE-EEEecCCcccccchhHHHHHhccCCCCcceEeecc
Q 014438 156 NTLHAAAILFKEGGDWDW-FINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTS 208 (424)
Q Consensus 156 AtL~~~~~lL~~~~~wd~-fi~LSgsDyPL~t~ddi~~~ls~~~~~~nFIe~~~ 208 (424)
+.+.++..+++... |- +-|=+|.++|+.=..-+.+.|.-.....-|||...
T Consensus 80 ~~~~~~~il~r~rP--dvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AFLQSLRILRRERP--DVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHhCC--CEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 99999999988643 43 33556889999988888888765445577888653
No 22
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=65.21 E-value=74 Score=33.40 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=58.1
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecC
Q 014438 74 IPRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRG 150 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~~l~rLl~aLy---hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 150 (424)
.|+++.+|-+|+ +.+.+.++++++- .|+.. +|-+|..+++...+.+++..+ ..++++++... ..+|
T Consensus 74 ~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~~------~~~~v~vv~~~---~n~G 142 (444)
T PRK14583 74 HPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALLA------EDPRLRVIHLA---HNQG 142 (444)
T ss_pred CCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHHH------hCCCEEEEEeC---CCCC
Confidence 578999999999 6777888888874 35444 555666665555555544332 45678776421 1234
Q ss_pred chHHHHHHHHHHHHHHcCCCccEEEEecCCcccc
Q 014438 151 PTMVTNTLHAAAILFKEGGDWDWFINLSASDYPL 184 (424)
Q Consensus 151 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL 184 (424)
- - .++...++. .+.||++.+-+.+.|-
T Consensus 143 k--a----~AlN~gl~~-a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 143 K--A----IALRMGAAA-ARSEYLVCIDGDALLD 169 (444)
T ss_pred H--H----HHHHHHHHh-CCCCEEEEECCCCCcC
Confidence 2 1 222333333 3579999999999873
No 23
>PRK10063 putative glycosyl transferase; Provisional
Probab=64.71 E-value=1.4e+02 Score=28.78 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=62.5
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC-----CCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeec
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYH-----PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYR 149 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyh-----P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 149 (424)
|++..+|.+++ ..+.+.++|+.+.+ ..+.=+|=+|..|++...+-++.+. ...+++++..++ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 67889999998 68889988888841 2345578888888776554444321 112577765432 2
Q ss_pred CchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 150 GPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 150 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
|.. .|--.+++.+ .-+|++.|.+.|......-++...+
T Consensus 69 G~~--~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GIY--DAMNKGIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CHH--HHHHHHHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 332 3333344433 2489999999999876443444444
No 24
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=63.51 E-value=69 Score=28.95 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHhhccCCcccccc--ceEEeccceeeeec
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVG--NVRMVSKANLVTYR 149 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLy---hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~--NV~vv~~r~~V~Wg 149 (424)
|++..+|-+++ ..+.+.++|+.+. +|...++| ||-.+++...+.++.+.+ .++ ++.++.....+ |
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~~eiiv-Vdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPKYEILF-CVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCCeEEEE-EeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 46888999998 4667888888885 34444444 555555544444444432 233 34444332222 2
Q ss_pred CchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 150 GPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 150 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
+.....+ +..+++. ..-||++.+-+.+.+ +.+-|.+.+.
T Consensus 71 ~~~~~~~----~n~g~~~-a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 71 INPKVNN----LIKGYEE-ARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred CCHhHHH----HHHHHHh-CCCCEEEEECCCceE--ChhHHHHHHH
Confidence 2222222 2223332 246899988776654 5666655543
No 25
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=63.45 E-value=78 Score=29.61 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=58.1
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHH
Q 014438 76 RLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVT 155 (424)
Q Consensus 76 kiAYlIl~hk~d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 155 (424)
+++.+|.+++ ..+.|.++|+.+.. ...=+|=||..|++... +++. ..++.++.. .|+|++.-.
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~-~~~eiivvD~gStD~t~-~i~~----------~~~~~v~~~----~~~g~~~~~ 63 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKW-AVDEIIVVDSGSTDRTV-EIAK----------EYGAKVYQR----WWDGFGAQR 63 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhc-ccCEEEEEeCCCCccHH-HHHH----------HcCCEEEEC----CCCChHHHH
Confidence 4678888888 68899999999963 32234557877766543 3321 235666543 567765222
Q ss_pred HHHHHHHHHHHcCCCccEEEEecCCcccccc-hhHHHHHhcc
Q 014438 156 NTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 196 (424)
Q Consensus 156 AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t-~ddi~~~ls~ 196 (424)
..+++. ..-||++.|-+.+.+-.. .+++.+.+..
T Consensus 64 ------n~~~~~-a~~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 64 ------NFALEL-ATNDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred ------HHHHHh-CCCCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 122222 134699999998886443 3345555543
No 26
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=62.02 E-value=2.1e+02 Score=32.30 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=63.3
Q ss_pred CCCCCcEEEEEEecCCCHH----HHHHHHHHHc---CCCCEEEEEEcCCCCHH----HHHHHHHhhccCCccccccceEE
Q 014438 71 SEKIPRLAYLISGSTGDGE----SLKRTLKALY---HPRNQYAVHLDLEAPVE----ERLELARFVESEPLFVNVGNVRM 139 (424)
Q Consensus 71 ~~~~~kiAYlIl~hk~d~~----~l~rLl~aLy---hP~n~y~IHvD~ks~~~----~~~~L~~~v~~~~~~~~~~NV~v 139 (424)
.++.++.+.+|-+|+.|++ .++..++.+. ++++..++=+|-.+++. +.+.++...+.. ....+|++
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~---~~~~~i~y 196 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAEL---GGEGRIFY 196 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhc---CCCCcEEE
Confidence 4457899999999997775 4555555443 44555555566555443 222222222211 12357777
Q ss_pred eccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccc-hhHHHHHhccCCCCcceEe
Q 014438 140 VSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLSTIPRNLNFIE 205 (424)
Q Consensus 140 v~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t-~ddi~~~ls~~~~~~nFIe 205 (424)
....... |.. .- +....+-+...++||++.|-+...|-.. ...+...+.. +.+.-.|.
T Consensus 197 r~R~~n~---~~K-aG---Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQ 255 (691)
T PRK05454 197 RRRRRNV---GRK-AG---NIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQ 255 (691)
T ss_pred EECCcCC---Ccc-HH---HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEe
Confidence 5433222 221 00 1111122234578999999888876542 3444445543 23444554
No 27
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=60.90 E-value=95 Score=27.33 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=49.7
Q ss_pred EEEecCCCHHHHHHHHHHHc------CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchH
Q 014438 80 LISGSTGDGESLKRTLKALY------HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTM 153 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLy------hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 153 (424)
+|.+|+ ..+.+.++++.|. .+.-.++| +|-.+++.....++.+. ...+||.++.... ..| .
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~------~~~~~i~~i~~~~--n~G---~ 68 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYEIIF-VDDGSTDRTLEILRELA------ARDPRVKVIRLSR--NFG---Q 68 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeEEEE-EeCCCCccHHHHHHHHH------hhCCCEEEEEecC--CCC---c
Confidence 566777 5778877776653 23334444 66666655444443332 2356888774321 222 2
Q ss_pred HHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 154 VTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 154 V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
..|.-.+++.+ . -||++.+.+.+. + +.+.+...++
T Consensus 69 ~~a~n~g~~~a----~-~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 69 QAALLAGLDHA----R-GDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHHhc----C-CCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 23333333332 2 388888876544 4 4445544444
No 28
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=60.73 E-value=51 Score=33.16 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=53.4
Q ss_pred CCcEEEEEEecCCCHH--H---------------HHHHHHHHcCCCCEEEEEEcCCC---CHHHHHHHHHhhccCCcccc
Q 014438 74 IPRLAYLISGSTGDGE--S---------------LKRTLKALYHPRNQYAVHLDLEA---PVEERLELARFVESEPLFVN 133 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~--~---------------l~rLl~aLyhP~n~y~IHvD~ks---~~~~~~~L~~~v~~~~~~~~ 133 (424)
...+|||+.|..|-+. . -.+.+....|||-+++.. |.+. +.++-.++...+...|.. .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~~~~~I~idqiR~l~~~~~~~p~e-~ 94 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QGKGRLHSIETPRAIKKQIWIHPYE-S 94 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CCCCCcCcHHHHHHHHHHHhhCccC-C
Confidence 4678999988765321 1 123333455888555433 4332 345544555444333321 2
Q ss_pred ccceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCC
Q 014438 134 VGNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSAS 180 (424)
Q Consensus 134 ~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgs 180 (424)
.-.|.++ |..-.|-...-+++-..|+++.+.-+||++|.+
T Consensus 95 ~~kv~ii-------~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 95 PYKIYII-------HEADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CceEEEE-------echhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 2344444 444445455555555666778888889988765
No 29
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=59.69 E-value=1.1e+02 Score=28.17 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=58.4
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 77 LAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 77 iAYlIl~hk~d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
+..+|.+|+...+.+.++|+.+......=+|=||-.++......+... ...+.+.++.. .++|. ..|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-------~~~~~~~v~~~----~~~g~--~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-------VKYGGIFVITV----PHPGK--RRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-------ccCCcEEEEec----CCCCh--HHH
Confidence 567888999433999999999976433334555655655544443211 23455666543 23443 233
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
--.+++.+ +-||++.|-+.+.|-.. .|...+.
T Consensus 69 ~n~g~~~a-----~~d~v~~lD~D~~~~~~--~l~~l~~ 100 (235)
T cd06434 69 LAEGIRHV-----TTDIVVLLDSDTVWPPN--ALPEMLK 100 (235)
T ss_pred HHHHHHHh-----CCCEEEEECCCceeChh--HHHHHHH
Confidence 33344332 46999999999997744 3444443
No 30
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=58.37 E-value=77 Score=36.02 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=66.8
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHH----HHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceee
Q 014438 71 SEKIPRLAYLISGSTGDGESLKRTLK----ALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLV 146 (424)
Q Consensus 71 ~~~~~kiAYlIl~hk~d~~~l~rLl~----aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V 146 (424)
..++++++.+|=+|+ ....+.++++ +++.|+-.+++=.|.. +....+.+... ...+++++++-....
T Consensus 59 ~~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~l------~~~~p~~~~v~~~~~- 129 (727)
T PRK11234 59 KPDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDAV------CARFPNVHKVVCARP- 129 (727)
T ss_pred cCCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHHH------HHHCCCcEEEEeCCC-
Confidence 345689999999999 6766666665 4567887777766533 33323333332 235688875532221
Q ss_pred eecCchHHHHHHHHHHHHHHc----CCCccEEEEecCCcccccchhHHHHHhccCCCCcceEee
Q 014438 147 TYRGPTMVTNTLHAAAILFKE----GGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEH 206 (424)
Q Consensus 147 ~Wgg~S~V~AtL~~~~~lL~~----~~~wd~fi~LSgsDyPL~t~ddi~~~ls~~~~~~nFIe~ 206 (424)
|.-+-..|--.+++.+.+. ..+++.++.+-+.|.|= .+.|. .+..+..+..++..
T Consensus 130 --g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~--pd~L~-~~~~l~~~~~~VQ~ 188 (727)
T PRK11234 130 --GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVIS--PMELR-LFNYLVERKDLIQI 188 (727)
T ss_pred --CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCC--hhHHH-HHHhhcCCCCeEee
Confidence 1123444444444444332 23678888887777753 34442 22222223356554
No 31
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=57.51 E-value=88 Score=30.13 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHH
Q 014438 87 DGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFK 166 (424)
Q Consensus 87 d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~ 166 (424)
+.+.|++++++|.. ++.-+|=||-.++.. ..+...+ ...++|+++...... | .-.|-=.+++.|++
T Consensus 6 ~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~~~------~~~~~i~~i~~~~N~--G---~a~a~N~Gi~~a~~ 71 (281)
T TIGR01556 6 DLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKNAR------LRGQKIALIHLGDNQ--G---IAGAQNQGLDASFR 71 (281)
T ss_pred cHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHHHh------ccCCCeEEEECCCCc--c---hHHHHHHHHHHHHH
Confidence 46899999999974 566788899886432 1222211 245789988543222 2 12244455666665
Q ss_pred cCCCccEEEEecCCcccc
Q 014438 167 EGGDWDWFINLSASDYPL 184 (424)
Q Consensus 167 ~~~~wd~fi~LSgsDyPL 184 (424)
. +.||+++|-..+.|-
T Consensus 72 ~--~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 72 R--GVQGVLLLDQDSRPG 87 (281)
T ss_pred C--CCCEEEEECCCCCCC
Confidence 3 579999999999985
No 32
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=55.38 E-value=1.5e+02 Score=27.76 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=55.1
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCC-EEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecC
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYH---PRN-QYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRG 150 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyh---P~n-~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 150 (424)
|+++.+|-+++ ..+.+.++|+.+.. |.. .=+|-||..+++...+.++.+.. ....+|.++.. ....|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-----~~~~~i~~~~~---~~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-----PSIFRVVVVPP---SQPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-----CCCeeEEEecC---CCCCc
Confidence 46888999998 67899999998853 322 23555666666654444433211 01123333332 12233
Q ss_pred chHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 151 PTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 151 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
.+ .|-- ..++.. .-||++.+.+.|.+- .+.+...+
T Consensus 72 ~~--~a~n----~g~~~a-~gd~i~~~DaD~~~~--~~~l~~~~ 106 (241)
T cd06427 72 KP--KACN----YALAFA-RGEYVVIYDAEDAPD--PDQLKKAV 106 (241)
T ss_pred hH--HHHH----HHHHhc-CCCEEEEEcCCCCCC--hHHHHHHH
Confidence 33 2222 233322 358999998888844 44443333
No 33
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=53.22 E-value=1.7e+02 Score=26.12 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHc--CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEec
Q 014438 87 DGESLKRTLKALY--HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVS 141 (424)
Q Consensus 87 d~~~l~rLl~aLy--hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~ 141 (424)
+.+.+...|.++. .++..++|+.|++++.+...++-..++. ..+.+|.++.
T Consensus 80 ~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~----aG~~~v~L~t 132 (137)
T COG0848 80 SLEELEAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKE----AGFKKVGLVT 132 (137)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHH----cCCceEEEEe
Confidence 5577877777776 3444799999999999988777666653 2467887764
No 34
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=52.45 E-value=83 Score=32.13 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCCEEEEEEcCCC-CHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHHcCCC
Q 014438 92 KRTLKALYHPRNQYAVHLDLEA-PVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGD 170 (424)
Q Consensus 92 ~rLl~aLyhP~n~y~IHvD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~ 170 (424)
.|++.+-.||+-.++-..|.+. +.++-.++...+...|.. ..-.|.++...+ .|-.+.-+++-..|+++.+
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~-g~~KV~iI~~a~-------~m~~~AaNaLLKtLEEPp~ 136 (325)
T PRK06871 65 CHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQ-GGNKVVYIQGAE-------RLTEAAANALLKTLEEPRP 136 (325)
T ss_pred HHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcccc-CCceEEEEechh-------hhCHHHHHHHHHHhcCCCC
Confidence 4555555688766554434432 455555565555433322 223555555433 4445555555566677888
Q ss_pred ccEEEEecCC
Q 014438 171 WDWFINLSAS 180 (424)
Q Consensus 171 wd~fi~LSgs 180 (424)
.-+||++|.+
T Consensus 137 ~~~fiL~t~~ 146 (325)
T PRK06871 137 NTYFLLQADL 146 (325)
T ss_pred CeEEEEEECC
Confidence 8899998865
No 35
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=52.45 E-value=1.3e+02 Score=27.52 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLH 159 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~ 159 (424)
+|.++++..+.+.++|+.+... +.-+|=+|..++......+ .+ ..+++.++.... + .| ...|--.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~-~~--------~~~~i~~i~~~~--n-~G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRL-RL--------NSEKIELIHLGE--N-LG--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHh-hc--------cCCcEEEEECCC--c-ee--hHHhhhH
Confidence 5777884339999999999865 5556668887765433221 11 246777774322 1 22 2233334
Q ss_pred HHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 160 AAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 160 ~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
+++.+.. .+.||++++.+.+++ ..+.|.+.+
T Consensus 67 g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l~ 97 (237)
T cd02526 67 GIKAALE--NGADYVLLFDQDSVP--PPDMVEKLL 97 (237)
T ss_pred HHHHHHh--CCCCEEEEECCCCCc--CHhHHHHHH
Confidence 4444433 258999999999986 477776663
No 36
>PRK10073 putative glycosyl transferase; Provisional
Probab=51.30 E-value=1.2e+02 Score=30.48 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCc
Q 014438 74 IPRLAYLISGSTGDGESLKRTLKALYHP--RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGP 151 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~~l~rLl~aLyhP--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 151 (424)
.|.+..+|-+++ ..+.|.+.|+.+... .+.=+|=||-.|++...+-+..+.+ ..++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~------~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAE------NYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHh------hCCCEEEEECCC----CCh
Confidence 367999999999 478899999988532 2333444555555544444444332 457888886432 344
Q ss_pred hHHHHHHHHHHHHHHcCCCccEEEEecCCcccc
Q 014438 152 TMVTNTLHAAAILFKEGGDWDWFINLSASDYPL 184 (424)
Q Consensus 152 S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL 184 (424)
+ .|--.+++.+ .=+|+..+.+.|+..
T Consensus 74 ~--~arN~gl~~a-----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 S--VARNTGLAVA-----TGKYVAFPDADDVVY 99 (328)
T ss_pred H--HHHHHHHHhC-----CCCEEEEECCCCccC
Confidence 3 3333333332 238999999999954
No 37
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.66 E-value=1.5e+02 Score=26.79 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=52.5
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCC--CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHH
Q 014438 80 LISGSTGDGESLKRTLKALY---HPR--NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMV 154 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLy---hP~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 154 (424)
+|.+++ +.+.+.++|++|. +|. ..++|--| .+++...+.++ +... ...++|.++.... ..++|. .
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~eiivvdd-~s~d~t~~~~~-~~~~----~~~~~v~~~~~~~-~~~~g~--~ 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEVILVDD-HSTDGTVQILE-FAAA----KPNFQLKILNNSR-VSISGK--K 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEEEEEcC-CCCcChHHHHH-HHHh----CCCcceEEeeccC-cccchh--H
Confidence 455666 7899999998884 344 34555544 45443333332 2211 1245677664332 122222 2
Q ss_pred HHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 155 TNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 155 ~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
.|-- .+++. ..-||++++.+.+.+ ..+.|...+.
T Consensus 72 ~a~n----~g~~~-~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 72 NALT----TAIKA-AKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HHHH----HHHHH-hcCCEEEEECCCccc--CHHHHHHHHH
Confidence 2222 22332 235899999999976 4556655554
No 38
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=49.71 E-value=1.5e+02 Score=29.52 Aligned_cols=98 Identities=11% Similarity=0.200 Sum_probs=50.4
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHH-HH--------cCCCCEEEEEEcC-------CCCHHHHHHHHHhhccCCcccccc
Q 014438 74 IPRLAYLISGSTGDG--ESLKRTLK-AL--------YHPRNQYAVHLDL-------EAPVEERLELARFVESEPLFVNVG 135 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~--~~l~rLl~-aL--------yhP~n~y~IHvD~-------ks~~~~~~~L~~~v~~~~~~~~~~ 135 (424)
.+.+|||+.|..++. ..+..++. .+ .||+-+++ --+. .-+.++-.++...+...|.. ...
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I-~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~-g~~ 90 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFI-ARETSATSNAKNISIEQIRKLQDFLSKTSAI-SGY 90 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEE-eccccccccCCcccHHHHHHHHHHHhhCccc-CCc
Confidence 578999999877422 12222222 22 46764433 2222 11344445565555333321 223
Q ss_pred ceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCC
Q 014438 136 NVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSAS 180 (424)
Q Consensus 136 NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgs 180 (424)
.|.++. +.-.|-.+.-.++=..|+++.+..+|+++|.+
T Consensus 91 KViII~-------~ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 91 KVAIIY-------SAELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred EEEEEe-------chHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 444443 33344444444444556678888899988876
No 39
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.47 E-value=1.7e+02 Score=24.70 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=52.0
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyh---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
+|.+++ ..+.+.++++.+.. +...++| +|..+.....+.+... ..++.++.... . .| ...|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~---------~~~~~~~~~~~--~-~g--~~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLREL---------FPEVRLIRNGE--N-LG--FGAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHh---------CCCeEEEecCC--C-cC--hHHH
Confidence 566777 68999999999953 3345555 5555555545444321 22566654321 1 22 2333
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
--.+++.+ +.+|++.+.+.+++- .+.+....
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~~--~~~l~~~~ 96 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVVE--PGALLELL 96 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEEC--ccHHHHHH
Confidence 33344433 578999999888864 34444443
No 40
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=48.42 E-value=1.2e+02 Score=30.38 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=13.8
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHH
Q 014438 74 IPRLAYLISGSTGDGESLKRTLKAL 98 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~~l~rLl~aL 98 (424)
.+.+|||+.|..|.......+.++|
T Consensus 22 rl~hAyLf~G~~G~~~~A~~~A~~l 46 (290)
T PRK07276 22 RLNHAYLFSGDFASFEMALFLAQSL 46 (290)
T ss_pred CcceeeeeeCCccHHHHHHHHHHHH
Confidence 4678888887665433233333333
No 41
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=48.20 E-value=95 Score=30.83 Aligned_cols=81 Identities=9% Similarity=-0.026 Sum_probs=41.6
Q ss_pred HHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCcc
Q 014438 93 RTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWD 172 (424)
Q Consensus 93 rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd 172 (424)
+++.+..|||-+++.-....-..++-.++...+...+.....-.|. +-|..-.|-.+.-.++=..|+++.+..
T Consensus 47 ~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~~KV~-------II~~ae~m~~~AaNaLLK~LEEPp~~t 119 (261)
T PRK05818 47 LKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGKKIY-------IIYGIEKLNKQSANSLLKLIEEPPKNT 119 (261)
T ss_pred HHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCCCEEE-------EeccHhhhCHHHHHHHHHhhcCCCCCe
Confidence 5556667888666532222223444444444332111111112344 444444555555555556667788888
Q ss_pred EEEEecCC
Q 014438 173 WFINLSAS 180 (424)
Q Consensus 173 ~fi~LSgs 180 (424)
+||++|.+
T Consensus 120 ~fiLit~~ 127 (261)
T PRK05818 120 YGIFTTRN 127 (261)
T ss_pred EEEEEECC
Confidence 88888764
No 42
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=47.12 E-value=2.6e+02 Score=26.65 Aligned_cols=113 Identities=21% Similarity=0.172 Sum_probs=62.6
Q ss_pred EEEEEEecCCCHHHHHHHHHHH---cCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchH
Q 014438 77 LAYLISGSTGDGESLKRTLKAL---YHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTM 153 (424)
Q Consensus 77 iAYlIl~hk~d~~~l~rLl~aL---yhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 153 (424)
--++++|+.|-...|.||++++ |.|+.++ +--+.+.+ .+..+.+....+ -....|..+...|+ |.=.=.|-
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS---~~k~~~F~~~~a-~~~a~~~~ipRsRe-VgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMS---EQKARSFELSLA-HCKAKNYEIPRSRE-VGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE-EecCchhh---HHHHHhhhcccc-ccchhheecchhhh-hhhhhhhh
Confidence 6788899888888999999987 5565554 22212222 222233322111 11234555544333 43333456
Q ss_pred HHHHHHHHHHHHHc--CCCccEEEEec-CCcccccchhHHHHHhc
Q 014438 154 VTNTLHAAAILFKE--GGDWDWFINLS-ASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 154 V~AtL~~~~~lL~~--~~~wd~fi~LS-gsDyPL~t~ddi~~~ls 195 (424)
|-.|+.++...+.. ...-|-+...- |.|.|+-=-..+.++|-
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 66666666655532 11124444444 79999987777777774
No 43
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=47.05 E-value=2.5e+02 Score=26.34 Aligned_cols=106 Identities=8% Similarity=0.056 Sum_probs=58.4
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH----cCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeee
Q 014438 73 KIPRLAYLISGSTGDGESLKRTLKAL----YHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTY 148 (424)
Q Consensus 73 ~~~kiAYlIl~hk~d~~~l~rLl~aL----yhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~W 148 (424)
..|++..+|-+++ ..+.+..++..+ ..+.+.=+|-+|-.|++...+.++++.+.. ...+|.++.... -
T Consensus 7 ~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~----~~~~v~~~~~~~---n 78 (243)
T PLN02726 7 GAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY----GEDRILLRPRPG---K 78 (243)
T ss_pred CCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc----CCCcEEEEecCC---C
Confidence 3578999999998 577777666555 223344477777777665544444332210 123566553221 1
Q ss_pred cCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 149 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
.|.+ .|-..+++.+ .-+|++.+.+.+.+ ..+.|...+.
T Consensus 79 ~G~~--~a~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 79 LGLG--TAYIHGLKHA-----SGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred CCHH--HHHHHHHHHc-----CCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 2332 2333333322 34799999888873 5555555543
No 44
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=46.50 E-value=4.3e+02 Score=29.88 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=61.8
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH---cCCC-CEEEEEEcCCCCHH--------------HHHHHHHhhccCCccccc
Q 014438 73 KIPRLAYLISGSTGDGESLKRTLKAL---YHPR-NQYAVHLDLEAPVE--------------ERLELARFVESEPLFVNV 134 (424)
Q Consensus 73 ~~~kiAYlIl~hk~d~~~l~rLl~aL---yhP~-n~y~IHvD~ks~~~--------------~~~~L~~~v~~~~~~~~~ 134 (424)
+.|+++.+|-+|+.+.+.++++++++ +.|. +.=++=+|..+++. .+.++++..+ .
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~-------~ 201 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR-------K 201 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-------H
Confidence 35789999999996566666666665 3453 33344455544321 2344444332 2
Q ss_pred cceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccch-hHHHHHhccCCCCcceE
Q 014438 135 GNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQ-DDLLHVLSTIPRNLNFI 204 (424)
Q Consensus 135 ~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~-ddi~~~ls~~~~~~nFI 204 (424)
.+|+++.... +.++-. .++..+++.. +-||++.+-+.+.|-... .++..+|.. +.+..++
T Consensus 202 ~~v~yi~r~~--n~~~KA------gnLN~al~~a-~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 202 LGVNYITRPR--NVHAKA------GNINNALKHT-DGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred cCcEEEECCC--CCCCCh------HHHHHHHHhc-CCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 3677765332 222211 1223334432 358999999999985432 344445543 2344444
No 45
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=43.54 E-value=2.8e+02 Score=25.95 Aligned_cols=106 Identities=10% Similarity=0.113 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEcCCC-CHHHHHHHHHhhccCCccccccceEEeccc--eeeeecCch-----HHHHHHH
Q 014438 88 GESLKRTLKALYHPRNQYAVHLDLEA-PVEERLELARFVESEPLFVNVGNVRMVSKA--NLVTYRGPT-----MVTNTLH 159 (424)
Q Consensus 88 ~~~l~rLl~aLyhP~n~y~IHvD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r--~~V~Wgg~S-----~V~AtL~ 159 (424)
...+=..++|+-|....++|..=+.. ...|...++ ..+||.+..-. ....+.... .+++-+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 36888889999999999999998876 455555443 24577665322 112222221 2222233
Q ss_pred HHHHHHHcCCCccEEEE---ecCCcccccchhHHHHHhccCCCCcceE
Q 014438 160 AAAILFKEGGDWDWFIN---LSASDYPLVTQDDLLHVLSTIPRNLNFI 204 (424)
Q Consensus 160 ~~~~lL~~~~~wd~fi~---LSgsDyPL~t~ddi~~~ls~~~~~~nFI 204 (424)
-++.++. ..+||-+|+ +.+-+|=|.+-+++..+++..|.+.+-|
T Consensus 106 ~a~~~l~-~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI 152 (178)
T PRK07414 106 YTQAVVD-EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI 152 (178)
T ss_pred HHHHHHh-CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE
Confidence 3333343 467999986 6777888999999999998877766655
No 46
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=41.37 E-value=1.9e+02 Score=29.52 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=56.6
Q ss_pred CCcEEEEEEecCCCHH-------------------------HHHHHHHHHcCCCCEEEEEEcCC--CCHHHHHHHHHhhc
Q 014438 74 IPRLAYLISGSTGDGE-------------------------SLKRTLKALYHPRNQYAVHLDLE--APVEERLELARFVE 126 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~-------------------------~l~rLl~aLyhP~n~y~IHvD~k--s~~~~~~~L~~~v~ 126 (424)
.+.+|||+.|-.|-+. .-.|++.+-.|||-+++---..+ -+.++-.++...+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 4678888877765321 12355666678886554332221 24455555655443
Q ss_pred cCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCC
Q 014438 127 SEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSAS 180 (424)
Q Consensus 127 ~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgs 180 (424)
..|. ...-.|.++...+ .|-.+.-+++-..|+++.+..+||++|.+
T Consensus 102 ~~~~-~g~~kV~iI~~ae-------~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 102 EHAR-LGGAKVVWLPDAA-------LLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred hccc-cCCceEEEEcchH-------hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3332 1233455555443 44455555555666788889999999875
No 47
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=40.84 E-value=1.5e+02 Score=28.81 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=59.0
Q ss_pred EEEEecCCCH-HHHHHHHHHHcC---CC-CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchH
Q 014438 79 YLISGSTGDG-ESLKRTLKALYH---PR-NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTM 153 (424)
Q Consensus 79 YlIl~hk~d~-~~l~rLl~aLyh---P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 153 (424)
.+|.+++ .. +.+.++|..+.. +. ..=+|-||-.|++.....+..... ....++|+++..... .|++
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G~~- 72 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EGLI- 72 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CCHH-
Confidence 3667777 56 899999999863 22 235889998887765554432111 124578998853321 2333
Q ss_pred HHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 154 VTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 154 V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
.|--.|++.+ .-||++.|-+.+.+ +.+-|...+
T Consensus 73 -~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ll 105 (299)
T cd02510 73 -RARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEPLL 105 (299)
T ss_pred -HHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHHHH
Confidence 3433344432 24899999998887 454444444
No 48
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=40.76 E-value=2.1e+02 Score=23.71 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=50.4
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYHP---RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyhP---~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
+|.+++ ..+.|.++|+.+... ...++| +|-.+++.....+..+... ...++.++... ...| ...|
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iiv-vdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~ 69 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIV-VDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGA 69 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEE-EeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHH
Confidence 456666 679999999888643 344455 5555555444444332211 11334433211 1223 2333
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHH
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHV 193 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ 193 (424)
--.+++.+ .-+|++++-+.|++ +.+.|...
T Consensus 70 ~n~~~~~~-----~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 70 LNAGLRHA-----KGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHHHHHhc-----CCCEEEEECCCCCc--ChHHHHHH
Confidence 33333332 46899999888877 44555544
No 49
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.60 E-value=21 Score=31.22 Aligned_cols=18 Identities=11% Similarity=0.484 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHHHHHH
Q 014438 17 KWFFSLVFSLLLSTILII 34 (424)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (424)
||++.+++.++++++|++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 687665555444444444
No 50
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=40.22 E-value=2.1e+02 Score=28.89 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=48.8
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHHc-----------------------CCCCEEEEEEcCC-CCHHHHHHHHHhhcc
Q 014438 74 IPRLAYLISGSTGDG--ESLKRTLKALY-----------------------HPRNQYAVHLDLE-APVEERLELARFVES 127 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~--~~l~rLl~aLy-----------------------hP~n~y~IHvD~k-s~~~~~~~L~~~v~~ 127 (424)
.+.+|||+.|..|-+ .....+.+++. ||+-.| +-.|.+ .+.++-.++...+..
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~-i~~~~~~i~id~ir~l~~~~~~ 104 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL-VAPDGQSIKKDQIRYLKEEFSK 104 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE-eccccccCCHHHHHHHHHHHhh
Confidence 467889988877632 23344444443 565433 333333 233333333333322
Q ss_pred CCccccccceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecC
Q 014438 128 EPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSA 179 (424)
Q Consensus 128 ~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 179 (424)
.|.. ....|.++.+.. .|-.....++-..++++.+.-+||+++.
T Consensus 105 ~~~~-~~~kvviI~~a~-------~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 105 SGVE-SNKKVYIIEHAD-------KMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CCcc-cCceEEEeehHh-------hhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 2322 234566665532 2223333444455566777788888765
No 51
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=38.75 E-value=3e+02 Score=25.07 Aligned_cols=95 Identities=7% Similarity=0.009 Sum_probs=52.9
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyh---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
+|.+++ ..+.|.++|+.|.. |+..=+|-+|..+++....-++.+.+.. ...++.++.....-.+ +-+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~~-~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSPS-PKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCCC-CccHHHH
Confidence 566777 57899999999963 3344577788877765554444443211 1235555421111111 1222333
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
.-.+++. ..-||++.|.+.|++.-
T Consensus 76 ~N~g~~~-----a~gd~i~~lD~D~~~~~ 99 (219)
T cd06913 76 KNQAIAQ-----SSGRYLCFLDSDDVMMP 99 (219)
T ss_pred HHHHHHh-----cCCCEEEEECCCccCCh
Confidence 3333332 23489999999998544
No 52
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=38.75 E-value=16 Score=29.39 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=15.7
Q ss_pred ecCCcccccchhHHHHHhc
Q 014438 177 LSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 177 LSgsDyPL~t~ddi~~~ls 195 (424)
+.|.|||++|+.||...|=
T Consensus 11 ~~~a~FPI~s~~eL~~alP 29 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPALP 29 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-T
T ss_pred HhcCCCCCCCHHHHHHhCC
Confidence 4578999999999999983
No 53
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.64 E-value=2.9e+02 Score=24.47 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=54.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 79 YLISGSTGDGESLKRTLKALYHPR--NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 79 YlIl~hk~d~~~l~rLl~aLyhP~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
.+|-+++ ..+.|.+.|+.+.... ..=+|=+|..+++...+.++.+.+..+ .++.++... ++.+...+
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-----~~~~~~~~~-----~~~G~~~~ 70 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDP-----FIIILIRNG-----KNLGVARN 70 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-----ceEEEEeCC-----CCccHHHH
Confidence 4666777 5788999888885422 233555666666655555554433211 234443222 23333434
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
.-.+ ++. ...+|+++|.+.|+.. .+.|.+.+.
T Consensus 71 ~n~g----~~~-~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 71 FESL----LQA-ADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred HHHH----HHh-CCCCEEEEECCCcccC--hhHHHHHHH
Confidence 3333 222 3479999999888875 444544444
No 54
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=37.23 E-value=2.5e+02 Score=25.31 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=53.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYHP---RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyhP---~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
+|.+++ ..+.|.++|+.+..- .+.=+|=||-.+++.....++.+.+ ..++|.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~------~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK------EYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH------hCCceEEEecC---CCCChH--HH
Confidence 566777 578888988888632 2333555676665544443443322 34566665322 224443 23
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
--.+++.+ . -||++.|.+.|.+ +.+.|...+.
T Consensus 70 ~n~g~~~a----~-gd~i~~lD~D~~~--~~~~l~~l~~ 101 (224)
T cd06442 70 YIEGFKAA----R-GDVIVVMDADLSH--PPEYIPELLE 101 (224)
T ss_pred HHHHHHHc----C-CCEEEEEECCCCC--CHHHHHHHHH
Confidence 33344432 2 2899999888765 3444444443
No 55
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=36.87 E-value=2.2e+02 Score=22.87 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=48.3
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYHPR--NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNT 157 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyhP~--n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~At 157 (424)
+|.+++ ..+.+..+++++..-. +.-++-+|..++......+....+ ...++..+ ...+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAK------KDPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHh------cCCCeEEE-----EecCCCChHHHH
Confidence 456666 6889999999886443 444555777666554444433221 01122222 122233333444
Q ss_pred HHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 158 LHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 158 L~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
-.++..+ +-||++.+.+.+.+..
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~~ 92 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLLP 92 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccCc
Confidence 4344433 4689999987777543
No 56
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=36.52 E-value=1.8e+02 Score=29.26 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=58.9
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHH-cCCCCEEEEEEcCCC------CHHHHHHHHHhhccCCccccccceEEeccceee
Q 014438 74 IPRLAYLISGSTGDGESLKRTLKAL-YHPRNQYAVHLDLEA------PVEERLELARFVESEPLFVNVGNVRMVSKANLV 146 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~~l~rLl~aL-yhP~n~y~IHvD~ks------~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V 146 (424)
...+...+ +++||..++..+ ..|+..++|-.=.+. ....++.|.... ..+||.+ +-...+
T Consensus 137 gl~fdl~~-----~~~ql~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-------~~pNv~~-KlSG~~ 203 (279)
T COG3618 137 GLHFDLQV-----DPHQLPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-------RRPNVWA-KLSGVY 203 (279)
T ss_pred CCeEEEEe-----ChhhhHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHHHH-------hCCCeEE-EEeeec
Confidence 34444444 455565555444 368777766433333 234456665543 4688885 222334
Q ss_pred eecCch-HHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhH
Q 014438 147 TYRGPT-MVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDD 189 (424)
Q Consensus 147 ~Wgg~S-~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~dd 189 (424)
..++.+ -++...--++.+.+.. .||.+|. |||+|..+...
T Consensus 204 ~~~~~~w~~~~v~p~~e~~i~~f-g~dR~vf--GSdwPv~~l~~ 244 (279)
T COG3618 204 AYSDESWTVEDVRPYVEELIELF-GWDRFVF--GSDWPVTSLES 244 (279)
T ss_pred ccccCCCCHHHHHHHHHHHHHhc-CccceEe--cCCCCcccccC
Confidence 555555 4555566666666654 5899888 99999987644
No 57
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.16 E-value=3.3e+02 Score=24.27 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=50.5
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyh---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
+|.+++ ..+.+.++|+.|.. |... +|=+|..+++...+.++.+. ...++.++.... .-|....+
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~e-iiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~~--n~g~~~~~-- 68 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDH-IIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLPE--NLGGAGGF-- 68 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCce-EEEEECCCCcchHHHHHHhc-------CCCceEEEECcc--ccchhhHH--
Confidence 567777 57899999999963 2223 56667777665555444332 112355553221 22322222
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCcccc
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPL 184 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL 184 (424)
=.++..+.+ .+.||++.+.+.+.+.
T Consensus 69 -n~~~~~a~~--~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 69 -YEGVRRAYE--LGYDWIWLMDDDAIPD 93 (202)
T ss_pred -HHHHHHHhc--cCCCEEEEeCCCCCcC
Confidence 223333432 3579999998888774
No 58
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=33.86 E-value=2.9e+02 Score=31.39 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=64.4
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEE--cCCCCHHHHHHHHHhhccCCccccccceEEecccee
Q 014438 72 EKIPRLAYLISGSTGDGESLKRTLKA----LYHPRNQYAVHL--DLEAPVEERLELARFVESEPLFVNVGNVRMVSKANL 145 (424)
Q Consensus 72 ~~~~kiAYlIl~hk~d~~~l~rLl~a----LyhP~n~y~IHv--D~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~ 145 (424)
.+.++++.+|=+|+ ..+.+.+++++ ++.|+-.++|-+ |-..+.+ .++... ..+|++++|..+.
T Consensus 68 ~~~~~vsIlVPa~n-E~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~---~~~~~~------~~~p~~~~v~~~~- 136 (703)
T PRK15489 68 RDEQPLAIMVPAWK-EYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETIT---EVERMR------RRYKRLVRVEVPH- 136 (703)
T ss_pred cCCCceEEEEeCCC-cHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHH---HHHHHh------ccCCcEEEEEcCC-
Confidence 34679999999999 78888888776 356854444432 3222232 232221 2457888765332
Q ss_pred eeecC-chHHHHHHHHHHHHHH----cCCCccEEEEecCCcccccchhHHHHHhccCCCCcceEe
Q 014438 146 VTYRG-PTMVTNTLHAAAILFK----EGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIE 205 (424)
Q Consensus 146 V~Wgg-~S~V~AtL~~~~~lL~----~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~~~~~~nFIe 205 (424)
+| -|--.|-=.+++.+++ ....++.++..-+.|.|=-.+-....++. .+..+|.
T Consensus 137 ---~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~---~~~~~iQ 195 (703)
T PRK15489 137 ---DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL---PRKDLVQ 195 (703)
T ss_pred ---CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc---CCcceee
Confidence 22 2333333333333322 13457778999999987544443333332 2335665
No 59
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=32.06 E-value=1.5e+02 Score=29.14 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=54.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEE---EEEEc-CCCCHHHHHHHHHhhccCCccccccceEEeccc--eeeeecCch
Q 014438 79 YLISGSTGDGESLKRTLKALYHPRNQY---AVHLD-LEAPVEERLELARFVESEPLFVNVGNVRMVSKA--NLVTYRGPT 152 (424)
Q Consensus 79 YlIl~hk~d~~~l~rLl~aLyhP~n~y---~IHvD-~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r--~~V~Wgg~S 152 (424)
.+|+++........++|+.|.+=+|.. ++|-. .+-+.+.+++|.. ..+|.++.-. ..-.+.+..
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 466676656676677887777656633 34442 4445666666643 1222222100 000011100
Q ss_pred HH--HHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHH
Q 014438 153 MV--TNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLL 191 (424)
Q Consensus 153 ~V--~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~ 191 (424)
.. .-.++.+|.+. ..++-+++|-+..+|+++.+.+-
T Consensus 74 ~~~~~~~~K~lA~l~---ssFeevllLDaD~vpl~~p~~lF 111 (271)
T PF11051_consen 74 FSKKGFQNKWLALLF---SSFEEVLLLDADNVPLVDPEKLF 111 (271)
T ss_pred cccCCchhhhhhhhh---CCcceEEEEcCCcccccCHHHHh
Confidence 00 12234445554 35899999999999999988763
No 60
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=31.67 E-value=2.1e+02 Score=25.98 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=51.7
Q ss_pred EEEecCCCHHHHHHHHHHHcC------CCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccc-eEEeccceeeeecCch
Q 014438 80 LISGSTGDGESLKRTLKALYH------PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGN-VRMVSKANLVTYRGPT 152 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyh------P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~N-V~vv~~r~~V~Wgg~S 152 (424)
+|.+++ ..+.+.++|+.+.. +.+.=+|-+|-.+++.....++.+.+ ..++ |+++.... ..|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH
Confidence 455666 45666655555531 13444666888887665555554433 2333 45554321 23433
Q ss_pred HHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhc
Q 014438 153 MVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 153 ~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls 195 (424)
.|-..+++.+ . -||++.+.+.+.+ +.+.|...+.
T Consensus 72 --~a~~~g~~~a----~-gd~i~~ld~D~~~--~~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAA----R-GDYILFADADLAT--PFEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHh----c-CCEEEEEeCCCCC--CHHHHHHHHH
Confidence 3444444443 1 2899999988873 4555555544
No 61
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=30.97 E-value=5.6e+02 Score=25.71 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=59.9
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc-----CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeee
Q 014438 73 KIPRLAYLISGSTGDGESLKRTLKALY-----HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVT 147 (424)
Q Consensus 73 ~~~kiAYlIl~hk~d~~~l~rLl~aLy-----hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~ 147 (424)
+.+++..+|-+++ ..+.+.++++++. .+.+.=+|=+|..|++...+.++...+. ...+|..+..
T Consensus 4 ~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~-----~~~~v~~i~~----- 72 (325)
T PRK10714 4 PIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQA-----PDSHIVAILL----- 72 (325)
T ss_pred CCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhh-----cCCcEEEEEe-----
Confidence 4567999999999 6777777776653 1223335666776766555544433221 1234543321
Q ss_pred ecCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhccC
Q 014438 148 YRGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTI 197 (424)
Q Consensus 148 Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~~ 197 (424)
-.++..-.|...+++.+ .-||++.+-+.+- .+.++|...+...
T Consensus 73 ~~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 73 NRNYGQHSAIMAGFSHV-----TGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred CCCCCHHHHHHHHHHhC-----CCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 12333344544444433 3488998887665 3666666666543
No 62
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=30.60 E-value=3.5e+02 Score=25.11 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCCEEEEEEcCC-CCHHHHHHHHHhhccCCccccccceEEeccceeeeecCc-hH--HHHHHHHHHHH
Q 014438 89 ESLKRTLKALYHPRNQYAVHLDLE-APVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGP-TM--VTNTLHAAAIL 164 (424)
Q Consensus 89 ~~l~rLl~aLyhP~n~y~IHvD~k-s~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~-S~--V~AtL~~~~~l 164 (424)
..+=..++|+-|....+++..=+. ....|...++ ..+||.+..-.....|..- +. .++..++++.+
T Consensus 19 AAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~----------~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~a 88 (172)
T PF02572_consen 19 AALGLALRAAGHGMRVLIVQFLKGGRYSGELKALK----------KLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEEA 88 (172)
T ss_dssp HHHHHHHHHHCTT--EEEEESS--SS--HHHHHHG----------GGT--EEEE--TT----GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHH----------hCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHHH
Confidence 577788999999999999999887 4455555442 4567776543334445433 22 23333333333
Q ss_pred HHc--CCCccEEEE---ecCCcccccchhHHHHHhccCCCCcceE
Q 014438 165 FKE--GGDWDWFIN---LSASDYPLVTQDDLLHVLSTIPRNLNFI 204 (424)
Q Consensus 165 L~~--~~~wd~fi~---LSgsDyPL~t~ddi~~~ls~~~~~~nFI 204 (424)
.+. ...||-+|+ +-+-+|=+.+-+++.+++...|..++-|
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 332 467999997 5667788899999999998766666554
No 63
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=30.56 E-value=4.3e+02 Score=27.14 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=56.2
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccce--eeeec
Q 014438 77 LAYLISGSTGDGESLKRTLKALYHP-----RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKAN--LVTYR 149 (424)
Q Consensus 77 iAYlIl~hk~d~~~l~rLl~aLyhP-----~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~--~V~Wg 149 (424)
++.+|++++ .++.++|+|++|..- ...++|-.|..... ..+.+..+. .+|.++.... ....|
T Consensus 2 ~PVlv~ayN-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~-~~~~v~~~~---------~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACN-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE-VADVAKSFG---------DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecC-CHHHHHHHHHHHHhccccCCCceEEEEeCCCchH-HHHHHHhhc---------cccEEEEcccccccccC
Confidence 467888999 699999999999743 34577777875432 222222211 1333332211 01111
Q ss_pred ------C-chHHHHHHHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 150 ------G-PTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 150 ------g-~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
+ ..+...-..|+..++... +.+++|.|=+.+.|-.
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~-~~~~vIILEDDl~~sP 112 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLF-GYSFVIILEDDLDIAP 112 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhc-CCCEEEEECCCCccCH
Confidence 2 233333344677777643 6899999988877643
No 64
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=29.51 E-value=4.4e+02 Score=26.78 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=53.6
Q ss_pred CCcEEEEEEecCCCHH--HHH-----------------------HHHHHHcCCCCEEEEEEcCC--CCHHHHHHHHHhhc
Q 014438 74 IPRLAYLISGSTGDGE--SLK-----------------------RTLKALYHPRNQYAVHLDLE--APVEERLELARFVE 126 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~--~l~-----------------------rLl~aLyhP~n~y~IHvD~k--s~~~~~~~L~~~v~ 126 (424)
.+.+|||+.|..|-+. ... |++.+-.||+..++-.-+++ -+.++-.++...+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 4678999988776331 122 23333347776665554432 23444445555443
Q ss_pred cCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCCc
Q 014438 127 SEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSASD 181 (424)
Q Consensus 127 ~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsD 181 (424)
..|. .....|.++...+.. -.+.-+++-..|+++.+.-+||+++.+-
T Consensus 100 ~~~~-~~~~kv~iI~~a~~m-------~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 100 QTAQ-LGGRKVVLIEPAEAM-------NRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred hccc-cCCCeEEEECChhhC-------CHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 3332 234566666554432 2333344444566677778888887653
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=28.90 E-value=4.8e+02 Score=25.86 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHH-------cCCCCEEEEEEcCCC-CHHHHHHHHHhhccCCccccccceEEeccc
Q 014438 74 IPRLAYLISGSTGDG--ESLKRTLKAL-------YHPRNQYAVHLDLEA-PVEERLELARFVESEPLFVNVGNVRMVSKA 143 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~--~~l~rLl~aL-------yhP~n~y~IHvD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r 143 (424)
..++|||+.|-.|-+ .....+.++| .||+...+...|.+. +.++-.++...+...|.. .-..|.|+.+.
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~-~~~kv~iI~~a 102 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYE-GDKKVIIIYNS 102 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCccc-CCceEEEEech
Confidence 467899999988642 2444555554 356654555545443 333434444444334433 24467766653
Q ss_pred eeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecC
Q 014438 144 NLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSA 179 (424)
Q Consensus 144 ~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 179 (424)
.. |-.+.-+++-..|+++.+..+||+++.
T Consensus 103 d~-------m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 103 EK-------MTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred hh-------cCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 32 223333444455667777889999873
No 66
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=26.55 E-value=4.8e+02 Score=24.89 Aligned_cols=108 Identities=16% Similarity=0.087 Sum_probs=57.5
Q ss_pred EEEEEEecCCC-HHHHHHHHHHHc--CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchH
Q 014438 77 LAYLISGSTGD-GESLKRTLKALY--HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTM 153 (424)
Q Consensus 77 iAYlIl~hk~d-~~~l~rLl~aLy--hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 153 (424)
.||+-++...+ ...+.-++..|- +++..++|+++...+.+.+..|+.... ..-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~------~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGW------IVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCC------EEEecCccCCcchhhhccchH
Confidence 37887776522 344455555553 456677788888788887777765321 111122222111110001111
Q ss_pred HHHHH-HHHHHHHHcCCCccEEEEecCCcccccchhHHHHH
Q 014438 154 VTNTL-HAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHV 193 (424)
Q Consensus 154 V~AtL-~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ 193 (424)
..++. ++.. .+. .++|.++.|.+.-+.+.+.++|.+.
T Consensus 75 ~~~~~~kl~~--~~l-~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 75 FKDTYTKLRL--WNL-TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred HHHHhHHHHh--ccc-cccceEEEEeCCeeEccCHHHHhCC
Confidence 12221 1111 112 3699999999999999998887543
No 67
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.50 E-value=4.9e+02 Score=23.29 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=51.1
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHH
Q 014438 78 AYLISGSTGDGESLKRTLKALYHP--RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVT 155 (424)
Q Consensus 78 AYlIl~hk~d~~~l~rLl~aLyhP--~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 155 (424)
+.+|.+|+ ..+.+.++|+.+..- .+.-+|=+|..+++.....++ . .+++++... .|.+.
T Consensus 2 svii~~~n-~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~----------~-~~~~~~~~~-----~g~~~-- 62 (221)
T cd02522 2 SIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR----------S-AGVVVISSP-----KGRAR-- 62 (221)
T ss_pred EEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh----------c-CCeEEEeCC-----cCHHH--
Confidence 45677777 577888888877531 233456667777654433221 1 466665432 23321
Q ss_pred HHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 156 NTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 156 AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
| +..+++.. .-+|++.+.+.++| +.+.+...+
T Consensus 63 a----~n~g~~~a-~~~~i~~~D~D~~~--~~~~l~~l~ 94 (221)
T cd02522 63 Q----MNAGAAAA-RGDWLLFLHADTRL--PPDWDAAII 94 (221)
T ss_pred H----HHHHHHhc-cCCEEEEEcCCCCC--ChhHHHHHH
Confidence 1 22222222 25899999999988 455555544
No 68
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=25.38 E-value=4.2e+02 Score=22.48 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=60.4
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCHH-HHHHHHHhhccCCccccccceEEeccceeeeecCchHH
Q 014438 77 LAYLISGSTGDGESLKRTLKALYH-PRNQYAVHLDLEAPVE-ERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMV 154 (424)
Q Consensus 77 iAYlIl~hk~d~~~l~rLl~aLyh-P~n~y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 154 (424)
+.++|.+|.+=.+-+...++.+.- ..+.+.+-+....+.+ ...++.+.++.. ..-..|-|+.+ ...|.+..+
T Consensus 2 ~~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~---~~~~~vivltD---l~GGSp~n~ 75 (116)
T TIGR00824 2 IAIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADL---DTEEEVLFLVD---IFGGSPYNA 75 (116)
T ss_pred cEEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhc---CCCCCEEEEEe---CCCCCHHHH
Confidence 357888888546778888888873 3457788777766544 556676666532 12356766643 667777776
Q ss_pred HHHHHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 155 TNTLHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 155 ~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
++.+ +.+. .-+..+||--.|+.
T Consensus 76 a~~~-----~~~~----~~~~vIsG~NLpml 97 (116)
T TIGR00824 76 AARI-----IVDK----PHMDVIAGVNLPLL 97 (116)
T ss_pred HHHH-----Hhhc----CCEEEEEecCHHHH
Confidence 5533 2232 23679999999984
No 69
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.00 E-value=42 Score=27.13 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=15.9
Q ss_pred cCCcccccchhHHHHHhc
Q 014438 178 SASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 178 SgsDyPL~t~ddi~~~ls 195 (424)
-|.|||++++.+|...|-
T Consensus 17 k~a~fPInn~~eL~~ALP 34 (80)
T COG4746 17 KGADFPINNPEELVAALP 34 (80)
T ss_pred ccCCCCCCCHHHHHHhcc
Confidence 368999999999999884
No 70
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=24.89 E-value=4.6e+02 Score=23.49 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=49.8
Q ss_pred EEEecCCCHHHHHHHHHHHcCC-CCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHH
Q 014438 80 LISGSTGDGESLKRTLKALYHP-RNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTL 158 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyhP-~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL 158 (424)
+|-++. ..+.|.++|++|..- .+.-+|=+|..+++.....++ . + ...++|+++.......-+|. -.|--
T Consensus 2 iIp~~N-e~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~-~-----~~~~~v~~i~~~~~~~~~Gk--~~aln 71 (191)
T cd06436 2 LVPCLN-EEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-L-A-----ITDSRVHLLRRHLPNARTGK--GDALN 71 (191)
T ss_pred EEeccc-cHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-h-e-----ecCCcEEEEeccCCcCCCCH--HHHHH
Confidence 566777 678999999988642 233456667666665444332 1 1 12467887753211112232 23333
Q ss_pred HHHHHHHHc----C--CCccEEEEecCCcccc
Q 014438 159 HAAAILFKE----G--GDWDWFINLSASDYPL 184 (424)
Q Consensus 159 ~~~~~lL~~----~--~~wd~fi~LSgsDyPL 184 (424)
.+++.+... + .+-+|++.+-+.+.+-
T Consensus 72 ~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~ 103 (191)
T cd06436 72 AAYDQIRQILIEEGADPERVIIAVIDADGRLD 103 (191)
T ss_pred HHHHHHhhhccccccCCCccEEEEECCCCCcC
Confidence 334443321 1 1236788777766643
No 71
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=24.41 E-value=5.5e+02 Score=23.43 Aligned_cols=103 Identities=15% Similarity=0.040 Sum_probs=54.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHH-HHHHHHhhccCCccccccceEEeccceeeeecCchHH
Q 014438 79 YLISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEE-RLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMV 154 (424)
Q Consensus 79 YlIl~hk~d~~~l~rLl~aLyh---P~n~y~IHvD~ks~~~~-~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 154 (424)
.+|-+|+.+++.|.++|+.|.. |+.. +|=+|..+++.. ...++.+.+. ...++.++.... ..|+- .
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~e-iiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~~--~~G~~--~ 71 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFE-VIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVEP--LPGAK--A 71 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcCC--CCCCc--h
Confidence 3567888445789999888853 3333 455565554433 3334333321 123566653221 22331 1
Q ss_pred HHHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHhcc
Q 014438 155 TNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLST 196 (424)
Q Consensus 155 ~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~ls~ 196 (424)
.|.-.+++.+ ..+.||++.+-+.+. .+.+.|.+.++.
T Consensus 72 ~a~n~g~~~a---~~~~d~i~~lD~D~~--~~~~~l~~l~~~ 108 (236)
T cd06435 72 GALNYALERT---APDAEIIAVIDADYQ--VEPDWLKRLVPI 108 (236)
T ss_pred HHHHHHHHhc---CCCCCEEEEEcCCCC--cCHHHHHHHHHH
Confidence 2222333332 124789998887775 466777666654
No 72
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.13 E-value=4.5e+02 Score=22.34 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHc--CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEe
Q 014438 88 GESLKRTLKALY--HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMV 140 (424)
Q Consensus 88 ~~~l~rLl~aLy--hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv 140 (424)
.+.+...++++. +|+..++|..|++++.+.-..+-..++. ..+.+|.++
T Consensus 69 ~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~----aG~~~v~l~ 119 (122)
T TIGR02803 69 RETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQ----AGYLKIGLV 119 (122)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHH----cCCCEEEEE
Confidence 466766676654 6888999999999998877666555542 234566654
No 73
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=23.99 E-value=8e+02 Score=28.64 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=59.8
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH---cCCCCEE-EEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeee
Q 014438 73 KIPRLAYLISGSTGDGESLKRTLKAL---YHPRNQY-AVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTY 148 (424)
Q Consensus 73 ~~~kiAYlIl~hk~d~~~l~rLl~aL---yhP~n~y-~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~W 148 (424)
..|+++.+|-+|+.+.+.+++.+.+. +.|...+ ++=+|..++++. .++++ ..+|+++..... -
T Consensus 258 ~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-~~la~----------~~~v~yI~R~~n--~ 324 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-RQFAQ----------EVGVKYIARPTH--E 324 (852)
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-HHHHH----------HCCcEEEEeCCC--C
Confidence 35799999999995445666666653 3454332 555666565543 23321 136777643321 1
Q ss_pred cCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccch-hHHHHHhccCCCCcceEe
Q 014438 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQ-DDLLHVLSTIPRNLNFIE 205 (424)
Q Consensus 149 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~-ddi~~~ls~~~~~~nFIe 205 (424)
+|- - .++..+++. .+-||++.+-+.+.|-... ..+..+|.+. .+.-++.
T Consensus 325 ~gK--A----GnLN~aL~~-a~GEyIavlDAD~ip~pdfL~~~V~~f~~d-P~VglVQ 374 (852)
T PRK11498 325 HAK--A----GNINNALKY-AKGEFVAIFDCDHVPTRSFLQMTMGWFLKD-KKLAMMQ 374 (852)
T ss_pred cch--H----HHHHHHHHh-CCCCEEEEECCCCCCChHHHHHHHHHHHhC-CCeEEEE
Confidence 211 1 122233333 2458999999999985443 2333444332 3344443
No 74
>PRK08309 short chain dehydrogenase; Provisional
Probab=23.33 E-value=5.8e+02 Score=23.34 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHH
Q 014438 87 DGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFK 166 (424)
Q Consensus 87 d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~ 166 (424)
+.+....+...+..+....++.+|-....+....+...++ .++.+.+ .|.|-....-++...+++.+=-
T Consensus 32 ~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~------~~g~id~-----lv~~vh~~~~~~~~~~~~~~gv 100 (177)
T PRK08309 32 REVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE------KNGPFDL-----AVAWIHSSAKDALSVVCRELDG 100 (177)
T ss_pred CHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH------HcCCCeE-----EEEeccccchhhHHHHHHHHcc
Confidence 4677777766564455667777888776655444443322 3344432 2556555555555555555544
Q ss_pred cCCCccEEEEecCC
Q 014438 167 EGGDWDWFINLSAS 180 (424)
Q Consensus 167 ~~~~wd~fi~LSgs 180 (424)
.+.+|.++|.|...
T Consensus 101 ~~~~~~~~h~~gs~ 114 (177)
T PRK08309 101 SSETYRLFHVLGSA 114 (177)
T ss_pred CCCCceEEEEeCCc
Confidence 46789999998443
No 75
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.62 E-value=4.8e+02 Score=22.10 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=57.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC-CEEEEEEcCCCCHH-HHHHHHHhhccCCccccccceEEeccceeeeecCchHHHH
Q 014438 79 YLISGSTGDGESLKRTLKALYHPR-NQYAVHLDLEAPVE-ERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTN 156 (424)
Q Consensus 79 YlIl~hk~d~~~l~rLl~aLyhP~-n~y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 156 (424)
++|.+|..=.+-+...++.+.-.+ +.+.+-+....+.+ ...++.+.++..+ .-..|-|+.+ ...|.+..+..
T Consensus 3 ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~viil~D---l~GGSp~n~~~ 76 (122)
T cd00006 3 IIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELD---SGEGVLILTD---LFGGSPNNAAA 76 (122)
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCcEEEEEe---CCCCCHHHHHH
Confidence 578888843578888888887444 77788888776554 3556666554321 2345666543 44566655443
Q ss_pred HHHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 157 TLHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 157 tL~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
.+ +... .-+..+||-+.|+.
T Consensus 77 ~~------~~~~---~~~~visG~nlpml 96 (122)
T cd00006 77 RL------SMEH---PPVEVIAGVNLPML 96 (122)
T ss_pred HH------HhcC---CCEEEEEccCHHHH
Confidence 32 2221 34678999999984
No 76
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=22.08 E-value=5.5e+02 Score=22.60 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=52.3
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHH
Q 014438 80 LISGSTGDGESLKRTLKALYH---PR-NQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVT 155 (424)
Q Consensus 80 lIl~hk~d~~~l~rLl~aLyh---P~-n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 155 (424)
+|-+++ +.+.+.++|+++.. |. +.-+|=+|-.+++...+.++.+ ...|.+... ..++|- -.
T Consensus 2 vIp~~n-e~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~---------~~~~~~~~~---~~~~gk--~~ 66 (183)
T cd06438 2 LIPAHN-EEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA---------GATVLERHD---PERRGK--GY 66 (183)
T ss_pred EEeccc-hHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc---------CCeEEEeCC---CCCCCH--HH
Confidence 566777 67888888888843 32 2334456555655433322211 112332211 223443 34
Q ss_pred HHHHHHHHHHHcCCCccEEEEecCCcccccchhHHHHHh
Q 014438 156 NTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 194 (424)
Q Consensus 156 AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t~ddi~~~l 194 (424)
|.-.+++.+.+...+.||++.+-+.+.|- .+.|.+..
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~--p~~l~~l~ 103 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVD--PNALEELN 103 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCC--hhHHHHHH
Confidence 44455655543334689999998888864 44444443
No 77
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=21.69 E-value=5.1e+02 Score=26.36 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCCccEEEEecCC
Q 014438 158 LHAAAILFKEGGDWDWFINLSAS 180 (424)
Q Consensus 158 L~~~~~lL~~~~~wd~fi~LSgs 180 (424)
-+++-..|+++.+.-+||+++.+
T Consensus 130 aNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 130 CNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHHHhhCCCCCCeEEEEECC
Confidence 33333455566667777777754
No 78
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=21.18 E-value=5.7e+02 Score=22.49 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=47.8
Q ss_pred EEEEecCCC-HHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCchHH
Q 014438 79 YLISGSTGD-GESLKRTLKALYH---PRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMV 154 (424)
Q Consensus 79 YlIl~hk~d-~~~l~rLl~aLyh---P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 154 (424)
.+|-+++.+ ++.+.++|+.+.. +...++|=.|..+++....-+..+.+ .+ ++.++..... .|. .
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~------~~-~i~~i~~~~n---~G~--~ 69 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR------KL-PLKVVPLEKN---RGL--G 69 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh------cC-CeEEEEcCcc---ccH--H
Confidence 356666643 4689999999853 43455554454445544333333322 22 3666543221 232 2
Q ss_pred HHHHHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 155 TNTLHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 155 ~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
.|--.|++ . .+-||++.+.+.|++..
T Consensus 70 ~a~N~g~~----~-a~gd~i~~lD~Dd~~~~ 95 (201)
T cd04195 70 KALNEGLK----H-CTYDWVARMDTDDISLP 95 (201)
T ss_pred HHHHHHHH----h-cCCCEEEEeCCccccCc
Confidence 23223332 2 24689999999998653
No 79
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=21.12 E-value=5.5e+02 Score=22.95 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=47.5
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHHc----------------------CCCCEEEEEEcCC---CCHHHHHHHHHhhc
Q 014438 74 IPRLAYLISGSTGDG--ESLKRTLKALY----------------------HPRNQYAVHLDLE---APVEERLELARFVE 126 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~--~~l~rLl~aLy----------------------hP~n~y~IHvD~k---s~~~~~~~L~~~v~ 126 (424)
...+|||+.|-.|.. .....+++.++ ||+. +++.-+.+ -..++..++...+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~~i~i~~ir~i~~~~~ 95 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDF-IIIKPDKKKKSIKIDQIREIIEFLS 95 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTE-EEEETTTSSSSBSHHHHHHHHHHCT
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcce-EEEecccccchhhHHHHHHHHHHHH
Confidence 467888888876542 44455555554 2222 22222222 13344445544443
Q ss_pred cCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHHcCCCccEEEEecCC
Q 014438 127 SEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFKEGGDWDWFINLSAS 180 (424)
Q Consensus 127 ~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgs 180 (424)
..+.. ....|.++.+.+ .|-....+|+-..|+++.+.-+||+++.+
T Consensus 96 ~~~~~-~~~KviiI~~ad-------~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 96 LSPSE-GKYKVIIIDEAD-------KLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SS-TT-SSSEEEEEETGG-------GS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred HHHhc-CCceEEEeehHh-------hhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 33322 234555554433 44445555555666667677777777643
No 80
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=20.78 E-value=7.2e+02 Score=23.47 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCCCEEEEEEcCCC-CHHHHHHHHHhhccCCccccccceEEeccceeeeecC------chHHHHHHHHH
Q 014438 89 ESLKRTLKALYHPRNQYAVHLDLEA-PVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRG------PTMVTNTLHAA 161 (424)
Q Consensus 89 ~~l~rLl~aLyhP~n~y~IHvD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg------~S~V~AtL~~~ 161 (424)
..+-.-++|+-|.....+|..=+.. ...|...++ ..+||.+..-.....|.. .-.....+.-+
T Consensus 38 ~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a 107 (191)
T PRK05986 38 AAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEA 107 (191)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHH
Confidence 5677888898898899999998876 456655543 235777763322233432 12223334444
Q ss_pred HHHHHcCCCccEEEE---ecCCcccccchhHHHHHhccCCCCcceE
Q 014438 162 AILFKEGGDWDWFIN---LSASDYPLVTQDDLLHVLSTIPRNLNFI 204 (424)
Q Consensus 162 ~~lL~~~~~wd~fi~---LSgsDyPL~t~ddi~~~ls~~~~~~nFI 204 (424)
+.++. +.+||-+|+ +-+-+|=|.+-+++..++...|.+++-|
T Consensus 108 ~~~l~-~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 108 KRMLA-DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred HHHHh-CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 44444 467999986 6677888999999999998877766655
Done!