Query 014438
Match_columns 424
No_of_seqs 228 out of 868
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014438.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014438hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 78.6 9.9 0.00072 32.0 11.7 115 75-204 1-122 (255)
2 d1omza_ c.68.1.15 (A:) Alpha-1 64.6 8.2 0.0006 31.1 7.3 101 76-196 4-108 (265)
3 d3beda1 c.54.1.1 (A:1-132) PTS 33.0 47 0.0034 25.9 6.6 95 75-185 1-97 (132)
4 d1xhba2 c.68.1.17 (A:95-422) P 22.8 1.9E+02 0.014 24.4 9.7 108 74-196 21-134 (328)
5 d1iioa_ a.39.4.1 (A:) Hypothet 22.4 13 0.00093 27.6 1.0 18 178-195 21-38 (84)
6 d1pdoa_ c.54.1.1 (A:) IIA doma 18.5 1.4E+02 0.01 22.5 6.8 94 77-185 2-97 (129)
7 d1j20a1 c.26.2.1 (A:1-165) Arg 17.6 35 0.0025 25.4 2.8 40 75-116 1-40 (165)
8 d2bgka1 c.2.1.2 (A:11-278) Rhi 16.5 1.1E+02 0.0077 26.0 6.2 18 162-179 74-91 (268)
9 d1jsda_ b.19.1.2 (A:) Hemagglu 15.8 34 0.0025 31.1 2.5 44 168-212 73-122 (317)
10 d1g5ta_ c.37.1.11 (A:) ATP:cor 14.8 2.7E+02 0.019 22.0 9.0 104 89-204 18-131 (157)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=78.60 E-value=9.9 Score=32.00 Aligned_cols=115 Identities=9% Similarity=0.118 Sum_probs=67.1
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeee---e
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVT---Y 148 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLy---hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~---W 148 (424)
|++..+|.+++ ..+.|++.|+.+- .+...+ |=+|-.|++...+-|+.+. .-.+|+++....... -
T Consensus 1 P~vSiiip~yN-~~~~l~~~l~Si~~Qt~~~~ei-ivvdd~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~ 71 (255)
T d1qg8a_ 1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFEL-FIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT 71 (255)
T ss_dssp CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEE-EEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred CEEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence 68999999998 4678888888873 244444 4455566677666665543 234677664332110 0
Q ss_pred cCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccc-hhHHHHHhccCCCCcceE
Q 014438 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLSTIPRNLNFI 204 (424)
Q Consensus 149 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t-~ddi~~~ls~~~~~~nFI 204 (424)
...+.-.| +..+++.. .-||++.|-+.|++... .+.+...|... .+..++
T Consensus 72 ~~~g~~~a----~N~gi~~a-~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~-~~~~~v 122 (255)
T d1qg8a_ 72 EKTRYAAL----INQAIEMA-EGEYITYATDDNIYMPDRLLKMVRELDTH-PEKAVI 122 (255)
T ss_dssp SSCHHHHH----HHHHHHHC-CCSEEEEEETTEEECTTHHHHHHHHHHHC-TTCCEE
T ss_pred ccchhccc----cccccccc-ccccccccccccccccchHHHHHHHHHhC-CCCCeE
Confidence 12222222 22333432 35899999999998754 44555666543 345555
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=64.62 E-value=8.2 Score=31.11 Aligned_cols=101 Identities=10% Similarity=-0.011 Sum_probs=58.5
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHhhccCCccccccceEEeccceeeeecCch
Q 014438 76 RLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPT 152 (424)
Q Consensus 76 kiAYlIl~hk~d~~~l~rLl~aLy---hP~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S 152 (424)
++..+|.+|+ .++.|+++|+.|- +| +..+|..|..++... ..++.... ..+.+.+..+ .++|.+
T Consensus 4 ~~tvii~tyn-~~~~l~~~l~sl~~q~~~-~~~iiV~d~~sd~~~-~~i~~~~~------~~~~~~~~~~----~~~g~~ 70 (265)
T d1omza_ 4 SFTLIMQTYN-RTDLLLRLLNHYQAVPSL-HKVIVVWNNVGEKGP-EELWNSLG------PHPIPVIFKP----QTANKM 70 (265)
T ss_dssp CEEEEEEESS-CHHHHHHHHHHHTTSTTE-EEEEEEECCTTCCCT-HHHHHHTC------CCSSCEEEEE----CSSCCG
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHcCCCc-CeEEEEECCCCCccH-HHHHHHhc------ccceEEEEec----CCCCch
Confidence 6788999999 6999999999994 33 356677776655443 33333221 2223333222 234443
Q ss_pred HHHHHHHHHHHHHHcCCCccEEEEecCCcccccc-hhHHHHHhcc
Q 014438 153 MVTNTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 196 (424)
Q Consensus 153 ~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t-~ddi~~~ls~ 196 (424)
. |-- .+++. .+=||++.|-+.|.+-.. .+.+...+..
T Consensus 71 ~--a~n----~~~~~-a~ge~i~~lD~D~~~~~~~l~~l~~~~~~ 108 (265)
T d1omza_ 71 R--NRL----QVFPE-VETNAVLMVDDDTLISAQDLVFAFSIWQQ 108 (265)
T ss_dssp G--GGG----SCCTT-CCSSEEEEECTTEEECHHHHHHHHHHHTT
T ss_pred h--hhh----hhHHh-CCcCEEEEeCcccCCCHHHHHHHHHHHHh
Confidence 2 111 22332 245899999988887543 4445555554
No 3
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=32.98 E-value=47 Score=25.86 Aligned_cols=95 Identities=7% Similarity=0.069 Sum_probs=61.0
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHc-CCCCEEEEEEcCCCCHH-HHHHHHHhhccCCccccccceEEeccceeeeecCch
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALY-HPRNQYAVHLDLEAPVE-ERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPT 152 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLy-hP~n~y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S 152 (424)
|+...+|.+|.+=..-+...++.+. ...|..+|.+....+.+ .+.++.+.++.. .-..|-|+.+ ...|.+.
T Consensus 1 Mk~kIii~sHG~~A~gl~~s~~~i~G~~~~i~~i~l~~~~~~~~~~~~l~~~~~~~----~~~~vliltD---l~GGTP~ 73 (132)
T d3beda1 1 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEA----GNVPTLVLAD---LKGGTPC 73 (132)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHHHHHHHHHH----CSCCEEEEES---STTSHHH
T ss_pred CCCCEEEEcCHHHHHHHHHHHHHHcCCcCCeEEEEcCCCCCHHHHHHHHHHHHhhC----CCCCEEEEEe---cccCChh
Confidence 5677899999965678888888887 34577888888776554 445566655421 1235666643 4455555
Q ss_pred HHHHHHHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 153 MVTNTLHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 153 ~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
.+++.+ +.. .+-+..+||-.+|+.
T Consensus 74 N~a~~~------~~~---~~~v~visG~NLpml 97 (132)
T d3beda1 74 NVAMMA------MGT---YPQLRVVAGLNLAMA 97 (132)
T ss_dssp HHHHHH------TTT---CTTEEEEESCCHHHH
T ss_pred HHHHHH------Hhc---CCCEEEEECCCHHHH
Confidence 554432 222 234788999999975
No 4
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.82 E-value=1.9e+02 Score=24.42 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=64.0
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc--C-CCCE-EEEEEcCCCCHH-HHHHHHHhhccCCccccccceEEeccceeeee
Q 014438 74 IPRLAYLISGSTGDGESLKRTLKALY--H-PRNQ-YAVHLDLEAPVE-ERLELARFVESEPLFVNVGNVRMVSKANLVTY 148 (424)
Q Consensus 74 ~~kiAYlIl~hk~d~~~l~rLl~aLy--h-P~n~-y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~W 148 (424)
.|.+..+|-+|+...+.|.|+|+.+- . |... =+|-||-.|++. ....+..+++. ..++|+++.... -
T Consensus 21 ~P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~-----~~~~i~vi~~~~---n 92 (328)
T d1xhba2 21 LPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKK-----LKVPVHVIRMEQ---R 92 (328)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHS-----SSSCEEEEECSS---C
T ss_pred CCCEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHh-----cCCCeEEEEecc---c
Confidence 57899999999832356889998873 2 2332 367788777654 23344444432 346788875321 1
Q ss_pred cCchHHHHHHHHHHHHHHcCCCccEEEEecCCcccccc-hhHHHHHhcc
Q 014438 149 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 196 (424)
Q Consensus 149 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~t-~ddi~~~ls~ 196 (424)
.|++ .|--.|++.+ .=+|++.|-+.|.+... .+.+...|..
T Consensus 93 ~G~~--~a~N~Gi~~a-----~gd~i~flD~D~~~~p~~l~~l~~~~~~ 134 (328)
T d1xhba2 93 SGLI--RARLKGAAVS-----RGQVITFLDAHCECTAGWLEPLLARIKH 134 (328)
T ss_dssp CCHH--HHHHHHHHHC-----CSSEEEEEESSEEECTTCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHhh-----hcceeeecCcccccChhHHHHHHHHHhc
Confidence 2333 3444444432 24789999888887544 3456666654
No 5
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.40 E-value=13 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.702 Sum_probs=15.8
Q ss_pred cCCcccccchhHHHHHhc
Q 014438 178 SASDYPLVTQDDLLHVLS 195 (424)
Q Consensus 178 SgsDyPL~t~ddi~~~ls 195 (424)
.|.+||+.|+.||...|=
T Consensus 21 ~gA~FPI~s~~eL~~alP 38 (84)
T d1iioa_ 21 AGADFPINSPEELMAALP 38 (84)
T ss_dssp TTSSSTTBHHHHHHHHCT
T ss_pred cCCCCCCCCHHHHHHhCC
Confidence 468999999999999983
No 6
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=18.49 E-value=1.4e+02 Score=22.52 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=59.0
Q ss_pred EEEEEEecCCCHHHHHHHHHHHc-CCCCEEEEEEcCCCCHH-HHHHHHHhhccCCccccccceEEeccceeeeecCchHH
Q 014438 77 LAYLISGSTGDGESLKRTLKALY-HPRNQYAVHLDLEAPVE-ERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMV 154 (424)
Q Consensus 77 iAYlIl~hk~d~~~l~rLl~aLy-hP~n~y~IHvD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 154 (424)
+..+|.+|..=..-+...++.+. ...+...|.+....+.+ ...++.+.++.. ..-..|-|+.+ ...|.++.+
T Consensus 2 IgIii~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~~~~~i~~~---~~~~~vliltD---l~GGsp~n~ 75 (129)
T d1pdoa_ 2 IAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKL---DTTKGVLFLVD---TWGGSPFNA 75 (129)
T ss_dssp CEEEEECSBTHHHHHHHHHHHHHCCCSSEEEECBCTTCCHHHHHHHHHHHHTTS---CCTTCEEEEES---STTSHHHHH
T ss_pred eEEEEEcChHHHHHHHHHHHHHhCCCCCeEEEEccCCCCHHHHHHHHHHHHHhc---CCCCCEEEEEe---ccccchhHH
Confidence 56788898854577888888887 45677788888776654 455666665421 13355777643 334444544
Q ss_pred HHHHHHHHHHHHcCCCccEEEEecCCccccc
Q 014438 155 TNTLHAAAILFKEGGDWDWFINLSASDYPLV 185 (424)
Q Consensus 155 ~AtL~~~~~lL~~~~~wd~fi~LSgsDyPL~ 185 (424)
.+.+ +... +-+..+||--+|+.
T Consensus 76 ~~~~------~~~~---~~v~visG~Nlpml 97 (129)
T d1pdoa_ 76 ASRI------VVDK---EHYEVIAGVNIPML 97 (129)
T ss_dssp HHHH------HTTC---TTEEEEESCCHHHH
T ss_pred HHHH------hccC---CCEEEEEcCCHHHH
Confidence 4422 2222 34789999999974
No 7
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=17.60 E-value=35 Score=25.44 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.5
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHH
Q 014438 75 PRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVE 116 (424)
Q Consensus 75 ~kiAYlIl~hk~d~~~l~rLl~aLyhP~n~y~IHvD~ks~~~ 116 (424)
||++-.++|.. |.-.+..+|+..+ ..+.+.+|+|.....+
T Consensus 1 mKvlvA~SGG~-DS~vll~lL~e~~-~~~vi~~~~~~~~~~~ 40 (165)
T d1j20a1 1 MKIVLAYSGGL-DTSIILKWLKETY-RAEVIAFTADIGQGEE 40 (165)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHH-TCEEEEEEEESSCSSC
T ss_pred CEEEEEEeCHH-HHHHHHHHHHHcC-CCEEEEEEeccCChHH
Confidence 78999999988 8888888887765 4677899998776543
No 8
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}
Probab=16.55 E-value=1.1e+02 Score=25.97 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=9.1
Q ss_pred HHHHHcCCCccEEEEecC
Q 014438 162 AILFKEGGDWDWFINLSA 179 (424)
Q Consensus 162 ~~lL~~~~~wd~fi~LSg 179 (424)
+.+.+..+.-|.+||-.|
T Consensus 74 ~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 74 DTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCcceeccccc
Confidence 333333345566666555
No 9
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=15.83 E-value=34 Score=31.05 Aligned_cols=44 Identities=20% Similarity=0.514 Sum_probs=34.9
Q ss_pred CCCccEEEEec----CCccc--ccchhHHHHHhccCCCCcceEeeccCCCC
Q 014438 168 GGDWDWFINLS----ASDYP--LVTQDDLLHVLSTIPRNLNFIEHTSDIGW 212 (424)
Q Consensus 168 ~~~wd~fi~LS----gsDyP--L~t~ddi~~~ls~~~~~~nFIe~~~~~~w 212 (424)
...|||||=-+ |.||| +...++|.+.|++. ++.++|+......|
T Consensus 73 ~~~WsyivErp~a~ng~CYPg~~~d~eeLR~l~ss~-~~~Er~e~~~~~~w 122 (317)
T d1jsda_ 73 GREWSYIVERPSAVNGMCYPGNVENLEELRSLFSSA-SSYQRIQIFPDTIW 122 (317)
T ss_dssp CEECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHS-SEEEEEESSCGGGC
T ss_pred cCceEEEEecCCcCCCcccccccCCHHHHHHHHhcc-CceeeEEecCcccc
Confidence 34699999864 67999 77888899999874 78999987766566
No 10
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=14.75 E-value=2.7e+02 Score=21.96 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCCEEEEEEcCCCC-HHHHHHHHHhhccCCccccccceEEeccceeeeecCchHHHHHHHHHHHHHH-
Q 014438 89 ESLKRTLKALYHPRNQYAVHLDLEAP-VEERLELARFVESEPLFVNVGNVRMVSKANLVTYRGPTMVTNTLHAAAILFK- 166 (424)
Q Consensus 89 ~~l~rLl~aLyhP~n~y~IHvD~ks~-~~~~~~L~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~- 166 (424)
..+-..++|+-|....++|..=+... ..+...+. ..++.+.....-..|.... -+.....++.+++
T Consensus 18 AAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~~~~-----------~~~~~~~~~~~~~~~~~~~-~e~~~~~a~~~~~~ 85 (157)
T d1g5ta_ 18 AAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLE-----------PHGVEFQVMATGFTWETQN-READTAACMAVWQH 85 (157)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHG-----------GGTCEEEECCTTCCCCGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEEecCCcccchhhhhc-----------ccCcEEEEecCCCcccCCC-hHHHHHHHHHHHHH
Confidence 67788899999999999999988653 34433221 2233332222223343332 2223333333222
Q ss_pred -----cCCCccEEEE---ecCCcccccchhHHHHHhccCCCCcceE
Q 014438 167 -----EGGDWDWFIN---LSASDYPLVTQDDLLHVLSTIPRNLNFI 204 (424)
Q Consensus 167 -----~~~~wd~fi~---LSgsDyPL~t~ddi~~~ls~~~~~~nFI 204 (424)
.+.+||-+|+ +.+-+|=|.+.+++.+.+...|.+.+.|
T Consensus 86 a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evV 131 (157)
T d1g5ta_ 86 GKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVI 131 (157)
T ss_dssp HHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEE
T ss_pred HHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEE
Confidence 2567998886 5677788899999999998777776665
Done!