Your job contains 1 sequence.
>014440
MKNSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIY
HAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVR
EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGL
LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET
GGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKI
GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNI
SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVV
ANEG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014440
(424 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504956103 - symbol:GTF2H2 "general transcripti... 1565 1.1e-160 1
DICTYBASE|DDB_G0272362 - symbol:gtf2h2 "TFIIH subunit" sp... 807 2.2e-80 1
UNIPROTKB|E2R345 - symbol:GTF2H2 "Uncharacterized protein... 789 1.8e-78 1
UNIPROTKB|I3LKI8 - symbol:GTF2H2 "Uncharacterized protein... 783 7.9e-78 1
UNIPROTKB|G3X7P1 - symbol:GTF2H2 "General transcription f... 775 5.5e-77 1
UNIPROTKB|Q2TBV5 - symbol:GTF2H2 "General transcription f... 775 5.5e-77 1
ZFIN|ZDB-GENE-030131-1959 - symbol:gtf2h2 "general transc... 775 5.5e-77 1
UNIPROTKB|Q13888 - symbol:GTF2H2 "General transcription f... 773 9.0e-77 1
UNIPROTKB|Q6P1K8 - symbol:GTF2H2C "General transcription ... 773 9.0e-77 1
RGD|1310499 - symbol:Gtf2h2 "general transcription factor... 760 2.1e-75 1
MGI|MGI:1345669 - symbol:Gtf2h2 "general transcription fa... 758 3.5e-75 1
POMBASE|SPCC1682.07 - symbol:ssl1 "transcription factor T... 758 3.5e-75 1
UNIPROTKB|F6XXE1 - symbol:GTF2H2 "Uncharacterized protein... 754 9.3e-75 1
UNIPROTKB|E1C9E6 - symbol:LOC100858972 "Uncharacterized p... 753 1.2e-74 1
SGD|S000003995 - symbol:SSL1 "Subunit of the core form of... 747 5.1e-74 1
FB|FBgn0037202 - symbol:Ssl1 "Ssl1" species:7227 "Drosoph... 731 2.5e-72 1
ASPGD|ASPL0000017788 - symbol:AN4283 species:162425 "Emer... 719 4.8e-71 1
UNIPROTKB|F5GZM1 - symbol:GTF2H2C "General transcription ... 710 4.3e-70 1
UNIPROTKB|J3KQC7 - symbol:GTF2H2 "General transcription f... 710 4.3e-70 1
UNIPROTKB|E2R5I8 - symbol:GTF2H2 "Uncharacterized protein... 694 2.1e-68 1
WB|WBGene00011814 - symbol:T16H12.4 species:6239 "Caenorh... 664 3.2e-65 1
CGD|CAL0004620 - symbol:orf19.1457 species:5476 "Candida ... 350 1.8e-62 2
GENEDB_PFALCIPARUM|MAL13P1.76 - symbol:MAL13P1.76 "TFIIH ... 492 5.4e-47 1
UNIPROTKB|Q8IEG6 - symbol:Ssl-like protein "TFIIH basal t... 492 5.4e-47 1
UNIPROTKB|D6RID8 - symbol:GTF2H2C "General transcription ... 342 4.2e-31 1
UNIPROTKB|D4A6E9 - symbol:Gtf2h2 "General transcription f... 274 6.8e-24 1
UNIPROTKB|D6RJD3 - symbol:GTF2H2C "General transcription ... 269 2.3e-23 1
UNIPROTKB|D6RGC9 - symbol:GTF2H2C "General transcription ... 227 1.5e-18 1
UNIPROTKB|D6RIT7 - symbol:GTF2H2C "General transcription ... 133 3.6e-08 1
>TAIR|locus:504956103 [details] [associations]
symbol:GTF2H2 "general transcription factor II H2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=IGI] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR001841
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50089 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 EMBL:CP002684
GO:GO:0008270 GO:GO:0006357 EMBL:AC005322 GO:GO:0003743
GO:GO:0006289 GO:GO:0005675 HOGENOM:HOG000159415 KO:K03142
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HSSP:Q13888 EMBL:AF499443 EMBL:AK229479 IPI:IPI00537421 PIR:E86184
RefSeq:NP_683275.2 UniGene:At.43339 ProteinModelPortal:Q9ZVN9
SMR:Q9ZVN9 STRING:Q9ZVN9 PRIDE:Q9ZVN9 EnsemblPlants:AT1G05055.1
GeneID:839332 KEGG:ath:AT1G05055 TAIR:At1g05055 InParanoid:Q9ZVN9
PhylomeDB:Q9ZVN9 ProtClustDB:CLSN2690701 Genevestigator:Q9ZVN9
Uniprot:Q9ZVN9
Length = 421
Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
Identities = 295/391 (75%), Positives = 321/391 (82%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WER+Y DDRSWE LQEDESG LRPIDNSAIYHAQYRRRLR S A RIQKGLIRYLY
Sbjct: 26 WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
IVID SRAAAEMDFRPSRM ++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LTDLGG
Sbjct: 86 IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145
Query: 150 SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIME 209
SPE+HIKALMGKL GDSS+QNAL+LVH LNQ+PSYGHREVLILYSAL TCDPGDIME
Sbjct: 146 SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205
Query: 210 TIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXXXX 269
TIQKCK+SK+RCSVIGLSAEMFICKHLCQETGG YSVA+DE H K
Sbjct: 206 TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265
Query: 270 XXXXSLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVS 329
+LIKMGFPQRA EGS++ICSCHKEVKIG GY CPRCKARVC+LPTEC ICGL LVS
Sbjct: 266 FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325
Query: 330 SPHLARSYHHLFPIAPFDEATP-SRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKC 388
SPHLARSYHHLFPIAPFDE S LND +CFGCQQSL+ +GNK CV C KC
Sbjct: 326 SPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKC 385
Query: 389 KKHFCLECDIYIHESLHNCPGCESLRQSNPV 419
K +FCL+CDIYIHESLHNCPGCES+ + V
Sbjct: 386 KHYFCLDCDIYIHESLHNCPGCESIHRPKSV 416
>DICTYBASE|DDB_G0272362 [details] [associations]
symbol:gtf2h2 "TFIIH subunit" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 InterPro:IPR015880 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM00355
SMART:SM01047 dictyBase:DDB_G0272362 InterPro:IPR007198
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GenomeReviews:CM000151_GR
GO:GO:0006366 EMBL:AAFI02000008 GO:GO:0006289 GO:GO:0005675
eggNOG:COG5151 KO:K03142 PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 HSSP:Q13888 RefSeq:XP_645146.1
ProteinModelPortal:Q86KZ2 STRING:Q86KZ2 PRIDE:Q86KZ2
EnsemblProtists:DDB0231032 GeneID:8618316 KEGG:ddi:DDB_G0272362
OMA:PRIADDE ProtClustDB:CLSZ2729241 Uniprot:Q86KZ2
Length = 461
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 162/394 (41%), Positives = 242/394 (61%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS---LTVATARIQKGLIR 86
WE + +++W + EDE G LRP N + + RRL+ + + R+++G+ R
Sbjct: 43 WENRF--EKTWLTIDEDEHG-LRP-SNQEERNTR-NRRLKNKDRDGILSQDQRVRRGMQR 97
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
+L +++DLS+ + D +PSR V+ + VE F++EFFDQNP+SQ+ ++ K+ A +++
Sbjct: 98 HLCLILDLSKTLSNQDLKPSRYQVLLQNVELFIKEFFDQNPISQLSIIITKNSKAEKISE 157
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
L G+ HI+A+ + G+ SIQN+L++ L +P YG REVL ++S+L+TCDP
Sbjct: 158 LSGNRLRHIQAMKDAIAMEGEPSIQNSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSS 217
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXX 266
+ +TIQ K IR S I ++AE++ICK + ++T GT V L+E H
Sbjct: 218 LQKTIQSLKNESIRVSFIHMAAELYICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPT 277
Query: 267 XXXXXXXSLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQ 326
+L++MGFPQ+ S C CH+++K GY CPRC + CELPT+C+IC L
Sbjct: 278 IGKTEA-ALVEMGFPQQITSTVPSPCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLS 335
Query: 327 LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKA--GLCVA 384
LVSSPHLARSYHHLF I F+E LN N+ TC GC L+S K+ L +
Sbjct: 336 LVSSPHLARSYHHLFQIPLFNEVNWKELNK--NV---TCIGC----LSSSEKSILSLFFS 386
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCES-LRQSN 417
CP+C++ FCL+CD++IHESLHNCPGCE+ L+ +N
Sbjct: 387 CPRCQEIFCLDCDLFIHESLHNCPGCENKLQNTN 420
>UNIPROTKB|E2R345 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 KO:K03142 OMA:ECKVCGL
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622 CTD:2966
EMBL:AAEX03001498 EMBL:AAEX03001499 RefSeq:XP_535266.2
Ensembl:ENSCAFT00000012468 Ensembl:ENSCAFT00000047120 GeneID:478089
KEGG:cfa:478089 NextBio:20853464 Uniprot:E2R345
Length = 395
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 167/394 (42%), Positives = 233/394 (59%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ PF E P L + HN R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDPFQEI-P--LEE-HNGERF-CYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|I3LKI8 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355
GO:GO:0008270 GO:GO:0006281 GeneTree:ENSGT00490000043395
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
EMBL:FP565272 Ensembl:ENSSSCT00000023904 Uniprot:I3LKI8
Length = 395
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 166/394 (42%), Positives = 234/394 (59%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVIEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C+G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E P L + HN R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEE-HNGERF-CYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYICSVCQHVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|G3X7P1 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9913 "Bos taurus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 InterPro:IPR015880 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM00355 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 OMA:ECKVCGL PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 EMBL:DAAA02050051
Ensembl:ENSBTAT00000040362 Uniprot:G3X7P1
Length = 395
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 164/394 (41%), Positives = 231/394 (58%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 183 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E P L + HN R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEE-HNGERF-CYACQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCSVCQNVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|Q2TBV5 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9913 "Bos taurus" [GO:0006468 "protein phosphorylation"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 InterPro:IPR015880 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM00355
SMART:SM01047 InterPro:IPR007198 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0006468 GO:GO:0006366
GO:GO:0005675 eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HOVERGEN:HBG059468 EMBL:BC109593 IPI:IPI00695858
RefSeq:NP_001033619.1 UniGene:Bt.58967 ProteinModelPortal:Q2TBV5
SMR:Q2TBV5 STRING:Q2TBV5 PRIDE:Q2TBV5 GeneID:511829 KEGG:bta:511829
CTD:2966 InParanoid:Q2TBV5 OrthoDB:EOG4M0F1X NextBio:20870116
Uniprot:Q2TBV5
Length = 395
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 164/394 (41%), Positives = 231/394 (58%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 183 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E P L + HN R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEE-HNGERF-CYACQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCSVCQNVFCVDCDVFVHDSLHCCPGC 385
>ZFIN|ZDB-GENE-030131-1959 [details] [associations]
symbol:gtf2h2 "general transcription factor IIH,
polypeptide 2" species:7955 "Danio rerio" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 ZFIN:ZDB-GENE-030131-1959
GO:GO:0005634 GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
eggNOG:COG5151 GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415
KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 HSSP:Q13888 HOVERGEN:HBG059468 CTD:2966
OrthoDB:EOG4M0F1X EMBL:BX510923 EMBL:BC045397 IPI:IPI00493468
RefSeq:NP_963875.1 UniGene:Dr.1630 SMR:Q7ZVV4 STRING:Q7ZVV4
Ensembl:ENSDART00000007587 GeneID:323239 KEGG:dre:323239
InParanoid:Q7ZVV4 NextBio:20808147 Uniprot:Q7ZVV4
Length = 392
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 167/395 (42%), Positives = 236/395 (59%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+L+
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQAKRKRVFESHG------QVRLGMMRHLF 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
++ID SR+ + D +P+R+ K +E FV E+FDQNP+SQIG++T K+ A LTDL G
Sbjct: 63 VIIDSSRSMEDQDLKPNRLTSTLKLMEHFVEEYFDQNPISQIGIITTKNKRAEKLTDLAG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ HI AL + C G+ S+ N+L++ L +P++ REVL+++S+L+TCDPG+I
Sbjct: 123 NPKKHITALRKAVDSTCVGEPSLYNSLNMALQTLKHMPAHTSREVLVIFSSLTTCDPGNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
E I+ KIR SVIGLSAE+ +C L +ETGG+Y+V LDESH K
Sbjct: 183 YELIKTLNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLLLHVKPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISIC----SCHKEVKIGVGYTCPRCKARVCE 315
SLI+MGFPQ + S S+ S E+ +G GY CP+C+A+ E
Sbjct: 243 SSSEC-SLIRMGFPQHVIASLSDQDAKPSFSMAHLDSSSEPELSLG-GYYCPQCRAKYTE 300
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP EC++CGL LVS+PHLARS+HHLFP+ F E TP L + C CQ L
Sbjct: 301 LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQE-TP--LEEYEG--ERFCEACQGEL--- 352
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C CKK FC+ECDI+IH++LH CPGC
Sbjct: 353 --KDKSVFTCLACKKVFCVECDIFIHDTLHCCPGC 385
>UNIPROTKB|Q13888 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0002031 "G-protein
coupled receptor internalization" evidence=IMP] [GO:0047485
"protein N-terminus binding" evidence=IPI] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA;TAS]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005675
"holo TFIIH complex" evidence=IDA] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=TAS]
[GO:0009411 "response to UV" evidence=TAS] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 Reactome:REACT_116125
GO:GO:0009411 GO:GO:0016032 GO:GO:0046872 GO:GO:0002031
GO:GO:0008270 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0003700
GO:GO:0008135 GO:GO:0006368 GO:GO:0006367 Reactome:REACT_1788
EMBL:U80017 GO:GO:0005675 GO:GO:0006370 GO:GO:0000718 GO:GO:0050434
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0006283
eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142 OMA:ECKVCGL
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622 UniGene:Hs.191356
HOVERGEN:HBG059468 CTD:2966 OrthoDB:EOG4M0F1X EMBL:Z30094
EMBL:AF078847 EMBL:U21911 EMBL:U21910 EMBL:BC005345 IPI:IPI00426640
PIR:S44454 RefSeq:NP_001506.1 UniGene:Hs.607501 PDB:1Z60
PDBsum:1Z60 ProteinModelPortal:Q13888 SMR:Q13888 DIP:DIP-786N
IntAct:Q13888 STRING:Q13888 PhosphoSite:Q13888 DMDM:17380326
PaxDb:Q13888 PRIDE:Q13888 DNASU:2966 Ensembl:ENST00000274400
Ensembl:ENST00000330280 Ensembl:ENST00000522323 GeneID:2966
KEGG:hsa:2966 UCSC:uc003kau.4 GeneCards:GC05M070366 HGNC:HGNC:4656
MIM:601748 neXtProt:NX_Q13888 PharmGKB:PA29042 InParanoid:Q13888
PhylomeDB:Q13888 EvolutionaryTrace:Q13888 GenomeRNAi:2966
NextBio:11756 ArrayExpress:Q13888 Bgee:Q13888 CleanEx:HS_GTF2H2
Genevestigator:Q13888 GermOnline:ENSG00000145736 Uniprot:Q13888
Length = 395
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 165/394 (41%), Positives = 232/394 (58%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E P L + +N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEE-YNGERF-CYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|Q6P1K8 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM01047
InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0006351 EMBL:AC147575
eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142 PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 EMBL:AK292361 EMBL:AK315282
EMBL:BC064557 EMBL:BC065021 EMBL:BC105980 EMBL:BC171860
IPI:IPI00738524 RefSeq:NP_001035955.1 RefSeq:NP_001092198.1
UniGene:Hs.191356 UniGene:Hs.422901 HSSP:Q13888
ProteinModelPortal:Q6P1K8 SMR:Q6P1K8 STRING:Q6P1K8
PhosphoSite:Q6P1K8 PaxDb:Q6P1K8 PRIDE:Q6P1K8
Ensembl:ENST00000380729 Ensembl:ENST00000510979
Ensembl:ENST00000574713 Ensembl:ENST00000577126 GeneID:728340
GeneID:730394 KEGG:hsa:728340 KEGG:hsa:730394 UCSC:uc003jwx.4
CTD:728340 CTD:730394 GeneCards:GC05Mr69870 GeneCards:GC05P068856
HGNC:HGNC:31394 HGNC:HGNC:35418 neXtProt:NX_Q6P1K8
PharmGKB:PA164720349 HOVERGEN:HBG059468 InParanoid:Q6P1K8
OMA:DIMETIA NextBio:126855 ArrayExpress:Q6P1K8 Bgee:Q6P1K8
Genevestigator:Q6P1K8 Uniprot:Q6P1K8
Length = 395
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 165/394 (41%), Positives = 232/394 (58%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E P L + +N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEE-YNGERF-CYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>RGD|1310499 [details] [associations]
symbol:Gtf2h2 "general transcription factor IIH, polypeptide 2"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0002031 "G-protein coupled receptor
internalization" evidence=ISO] [GO:0004672 "protein kinase
activity" evidence=ISO;ISS] [GO:0005675 "holo TFIIH complex"
evidence=ISO;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
phosphorylation" evidence=ISO;ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO;ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISO;ISS] [GO:0047485 "protein
N-terminus binding" evidence=ISO] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 RGD:1310499 GO:GO:0006355
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0006468
GO:GO:0006366 GO:GO:0005675 eggNOG:COG5151
GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415 KO:K03142
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HOVERGEN:HBG059468 CTD:2966 OrthoDB:EOG4M0F1X EMBL:BC126097
IPI:IPI00776942 RefSeq:NP_001070896.1 UniGene:Rn.144260
ProteinModelPortal:A0JN27 SMR:A0JN27 STRING:A0JN27
PhosphoSite:A0JN27 Ensembl:ENSRNOT00000061183 GeneID:294693
KEGG:rno:294693 UCSC:RGD:1310499 NextBio:638415 ArrayExpress:A0JN27
Genevestigator:A0JN27 Uniprot:A0JN27
Length = 396
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 162/395 (41%), Positives = 229/395 (57%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H K
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA------GEGSISICSCHKE---VKIGV---GYTCPRCKARVCE 315
SLI+MGFPQ + S H + + G+ GY CP+C+A+ CE
Sbjct: 243 SGSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 301
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP EC+ICGL LVS+PHLARSYHHLFP+ F E P L + C+GCQ L
Sbjct: 302 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEEYKG--ERFCYGCQGEL--- 353
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYVCTVCRNVFCVDCDVFVHDSLHCCPGC 386
>MGI|MGI:1345669 [details] [associations]
symbol:Gtf2h2 "general transcription factor II H,
polypeptide 2" species:10090 "Mus musculus" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0002031 "G-protein coupled receptor
internalization" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=ISO]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 MGI:MGI:1345669
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0006468 GO:GO:0006366 EMBL:AF242432 GO:GO:0005675
eggNOG:COG5151 GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415
KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 HOVERGEN:HBG059468 CTD:2966 OrthoDB:EOG4M0F1X
IPI:IPI00279701 RefSeq:NP_071294.3 UniGene:Mm.272533
ProteinModelPortal:Q9JIB4 SMR:Q9JIB4 IntAct:Q9JIB4 STRING:Q9JIB4
PhosphoSite:Q9JIB4 PaxDb:Q9JIB4 PRIDE:Q9JIB4
Ensembl:ENSMUST00000066984 GeneID:23894 KEGG:mmu:23894
UCSC:uc007rqu.2 ChiTaRS:GTF2H2 NextBio:303657 Bgee:Q9JIB4
CleanEx:MM_GTF2H2 Genevestigator:Q9JIB4
GermOnline:ENSMUSG00000021639 Uniprot:Q9JIB4
Length = 396
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 160/395 (40%), Positives = 229/395 (57%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H K
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA------GEGSISICSCHKE---VKIGV---GYTCPRCKARVCE 315
SLI+MGFPQ + S H + + G+ GY CP+C+A+ CE
Sbjct: 243 SSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 301
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP EC+ICGL LVS+PHLARSYHHLFP+ F E + L + C+GCQ L
Sbjct: 302 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIS---LEEYKG--ERFCYGCQGEL--- 353
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 386
>POMBASE|SPCC1682.07 [details] [associations]
symbol:ssl1 "transcription factor TFIIH complex subunit
Ssl1" species:4896 "Schizosaccharomyces pombe" [GO:0000439 "core
TFIIH complex" evidence=ISO] [GO:0000991 "core RNA polymerase II
binding transcription factor activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=NAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IC] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM01047
PomBase:SPCC1682.07 InterPro:IPR007198 GO:GO:0005829 GO:GO:0006355
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
GO:GO:0000439 eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142
OMA:ECKVCGL OrthoDB:EOG4DJP4V PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 EMBL:AF017646 EMBL:AB016221 PIR:T43534
RefSeq:NP_587800.1 ProteinModelPortal:O74995 IntAct:O74995
STRING:O74995 EnsemblFungi:SPCC1682.07.1 GeneID:2539194
KEGG:spo:SPCC1682.07 NextBio:20800365 Uniprot:O74995
Length = 421
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 158/394 (40%), Positives = 221/394 (56%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y RSW+ +QED G L + I + +R LR T +Q+G+IR++
Sbjct: 39 WEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRD------TTPLQRGIIRHMV 90
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+DLS + E DF R + K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL G
Sbjct: 91 LVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHG 150
Query: 150 SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIME 209
+P+SHI+ L CSG+ S+QNAL++ L+ I S+G REVLI++ ++ + DPGDI +
Sbjct: 151 NPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFK 210
Query: 210 TIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT----YSVALDESHSKXXXXXXXXX-X 264
TI IR ++GL+AE+ ICK +C +T + Y V + E H +
Sbjct: 211 TIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPA 270
Query: 265 XXXXXXXXXSLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICG 324
SL+ MGFP + E S+C+CH G G+ CPRCKA+VC LP EC C
Sbjct: 271 TDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCS 329
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST-CFGCQQSLLA------SGN 377
L L+ S HLARSYHHLFP+ + E P N +ST CF CQ +
Sbjct: 330 LVLILSTHLARSYHHLFPLKNWSEI-PWSANP-----KSTHCFACQLPFPKPPVSPFDES 383
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
+ + ACP CK HFCL+CD++ HE LH C GC+
Sbjct: 384 TSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 417
>UNIPROTKB|F6XXE1 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 EMBL:AAEX03001498 EMBL:AAEX03001499
Ensembl:ENSCAFT00000012468 Uniprot:F6XXE1
Length = 390
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 160/394 (40%), Positives = 225/394 (57%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 XXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ PF E N + CF Q
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDPFQEIPLEEHNGESDFL--FCFSLQ------- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -----VYVCAVCQNVFCVDCDVFVHDSLHCCPGC 381
>UNIPROTKB|E1C9E6 [details] [associations]
symbol:LOC100858972 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355
GO:GO:0008270 GO:GO:0006281 GeneTree:ENSGT00490000043395
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
EMBL:AADN02070647 EMBL:AADN02070646 IPI:IPI00573333
Ensembl:ENSGALT00000003778 Uniprot:E1C9E6
Length = 397
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 166/396 (41%), Positives = 234/396 (59%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ + ++ A+ R+R+ +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIDDILFKAK-RKRIYEHH-----GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+GL+ K A +T+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQMGLIVTKSKRAEKMTELSG 122
Query: 150 SPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ HI AL + C G+ S+ N+L+L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPKKHIAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREVLIVFSSLTTCDPANI 182
Query: 208 METIQ-KC-KESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXX 265
+ I+ KC K KIR SVIGLSAE+ +C L +ETGGTY V LDE+H K
Sbjct: 183 YDLIKMKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDETHYKELLMHHVSPPP 242
Query: 266 XXXXXXXXSLIKMGFPQRA--------GEGSISICSC--HKEVKIGV-GYTCPRCKARVC 314
SLI+MGFPQ + S S+ + E + + GY CP+C+A+
Sbjct: 243 ASSTSEC-SLIRMGFPQHTTASLSDQDAKPSFSMAQLENNSEPCLTLDGYFCPQCRAKYS 301
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E P L + C GCQ +
Sbjct: 302 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEEYQG--ERYCQGCQAEI-- 354
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C CK FC+ECD+++H+SLH CPGC
Sbjct: 355 ---KDQNVYICKTCKNAFCVECDVFVHDSLHCCPGC 387
>SGD|S000003995 [details] [associations]
symbol:SSL1 "Subunit of the core form of RNA polymerase
transcription factor TFIIH" species:4932 "Saccharomyces cerevisiae"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA;IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA;IDA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=IDA] [GO:0000990 "core RNA polymerase binding
transcription factor activity" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 InterPro:IPR015880
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327
SMART:SM00355 SMART:SM01047 SGD:S000003995 InterPro:IPR007198
GO:GO:0046872 GO:GO:0006413 GO:GO:0008270 EMBL:BK006945
GO:GO:0006366 GO:GO:0006289 GO:GO:0070816 GO:GO:0005675
GO:GO:0000439 GO:GO:0000112 EMBL:L26523 EMBL:Z17385 EMBL:Z73177
EMBL:AY692893 PIR:A46394 RefSeq:NP_013105.1
ProteinModelPortal:Q04673 SMR:Q04673 DIP:DIP-2435N IntAct:Q04673
MINT:MINT-629517 STRING:Q04673 PaxDb:Q04673 PeptideAtlas:Q04673
EnsemblFungi:YLR005W GeneID:850691 KEGG:sce:YLR005W CYGD:YLR005w
eggNOG:COG5151 GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415
KO:K03142 OMA:ECKVCGL OrthoDB:EOG4DJP4V NextBio:966710
Genevestigator:Q04673 GermOnline:YLR005W PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 Uniprot:Q04673
Length = 461
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 158/395 (40%), Positives = 227/395 (57%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE RSW+ ++ D+ G + + S I A+ +R + +++T Q+G+IR L
Sbjct: 76 WEDEIK--RSWDLVKVDDEGDMASLVAS-IVEARKKRTAK-KNITP----YQRGIIRSLI 127
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+ +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ HI AL K G+ S+QNAL++ GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETG-GT---YSVALDESHSKXXXXXXXXX 263
+TI KIR V+GLSA++ ICK LC+ T G Y + LDE+H K
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 264 XXXXXXXXXXSLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRIC 323
+L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 324 GLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASGNKAGLC 382
L L+ S HLARSYHHL P+ F E P+ CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEV-PTT----EKFRSEDCFSCQSRFPILKNHKNGKL 421
Query: 383 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>FB|FBgn0037202 [details] [associations]
symbol:Ssl1 "Ssl1" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS;IDA] [GO:0001111 "promoter clearance from RNA
polymerase II promoter" evidence=ISS] [GO:0000439 "core TFIIH
complex" evidence=ISS] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0001113
"transcriptional open complex formation at RNA polymerase II
promoter" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 EMBL:AE014296 GO:GO:0006355
GO:GO:0008270 GO:GO:0006281 GO:GO:0006367 GO:GO:0005675
GO:GO:0000439 eggNOG:COG5151 GeneTree:ENSGT00490000043395 KO:K03142
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HSSP:Q13888 EMBL:AY047574 RefSeq:NP_649427.1 UniGene:Dm.6850
SMR:Q9VNP8 IntAct:Q9VNP8 MINT:MINT-961218 STRING:Q9VNP8
EnsemblMetazoa:FBtr0078554 EnsemblMetazoa:FBtr0332051 GeneID:40509
KEGG:dme:Dmel_CG11115 UCSC:CG11115-RA CTD:40509 FlyBase:FBgn0037202
InParanoid:Q9VNP8 OrthoDB:EOG49P8F1 GenomeRNAi:40509 NextBio:819116
Uniprot:Q9VNP8
Length = 438
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 153/403 (37%), Positives = 240/403 (59%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA+++DE G L + AI A+ ++ + + + + + G++R+++
Sbjct: 14 WETGY--EKTWEAIKDDEDGML----DGAI--AEIIQKAKRQRQAQKSKQNRLGMMRHMF 65
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +K A +T+L G
Sbjct: 66 VVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALKAKRAEKVTELTG 125
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ H+KAL + + + + S+QN LDL L +PS+ RE++I+ +L+TCDP DI
Sbjct: 126 TSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDI 185
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXXX 267
TI + K+ IRCSVI LSAE+ + ++L Q+T GT+ LD++H +
Sbjct: 186 NLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAA 245
Query: 268 XXXXXXSLIKMGFPQRAGE--GS---ISICSCHKE------VKIGVGYTCPRCKARVCEL 316
SLI+MGFP E G +S+C CH E G+ CP+C ++ CEL
Sbjct: 246 KTQHN-SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSKYCEL 304
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDE----ATPSRLNDLHNISRSTCFGCQQSL 372
P EC+ CGL LVS+PHLARSYHHLFP+ F+E A P+ +DL + R C+GC ++L
Sbjct: 305 PVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSDVRE-CYGCAKAL 363
Query: 373 LASGNKAG--LCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
+K + C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 364 GQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>ASPGD|ASPL0000017788 [details] [associations]
symbol:AN4283 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
InterPro:IPR015880 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028
PROSITE:PS50234 SMART:SM00327 SMART:SM00355 SMART:SM01047
InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355 GO:GO:0008270
GO:GO:0006281 EMBL:BN001302 HOGENOM:HOG000159415 OMA:ECKVCGL
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
EnsemblFungi:CADANIAT00004371 Uniprot:C8V3Z3
Length = 455
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 149/396 (37%), Positives = 226/396 (57%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
R+WE L E G + + ++ +R L+ T +Q+G+IR++ +++DLS++
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKD------TTPLQRGIIRHIILILDLSQS 101
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
E D RP+R ++ + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 102 MMEKDLRPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISA 161
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ + G S+QN L++ G L PS+G RE+ I++ +L + DPGDI +TI
Sbjct: 162 IQDLRSQDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLI 221
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGGT----YSVALDESHSKXXXXXXXXX-XXXXXXX 270
+ KIR ++GL+A++ IC+ LC T G Y VAL+E H +
Sbjct: 222 DDKIRVGIVGLAAQVAICRELCSRTNGGDDTYYGVALNEQHFRELMLAVTTPPATYSQKQ 281
Query: 271 XXXSLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSS 330
SL+ MGFP R E S+C+CH G GY C RC ++VC LP EC CGL L+ S
Sbjct: 282 SASSLLMMGFPSRTIESFPSLCACHSNPTPG-GYLCSRCNSKVCGLPAECPSCGLTLILS 340
Query: 331 PHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC---------QQSLLASGNKA-G 380
HLARSYHHLFP+ + E + R H +TCF C ++ A+ N A G
Sbjct: 341 THLARSYHHLFPLMNWVEVSWERA---HR--STTCFACGIAFPTIPPKEQWQATQNLAKG 395
Query: 381 LCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+ V+ C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 396 MSVSSRYECTVCENHFCIDCDLFAHEVVHNCPGCQS 431
>UNIPROTKB|F5GZM1 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028
PROSITE:PS50234 SMART:SM00327 SMART:SM01047 InterPro:IPR007198
GO:GO:0005634 GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
EMBL:AC147575 PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HGNC:HGNC:31394 EMBL:AC145102 IPI:IPI01015993
ProteinModelPortal:F5GZM1 SMR:F5GZM1 Ensembl:ENST00000508344
ArrayExpress:F5GZM1 Bgee:F5GZM1 Uniprot:F5GZM1
Length = 338
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 149/339 (43%), Positives = 204/339 (60%)
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 1 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 60
Query: 145 TDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
T+L G+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TC
Sbjct: 61 TELSGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTC 120
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXX 262
DP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 121 DPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLS 180
Query: 263 XXXXXXXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKA 311
SLI+MGFPQ + S S+ + G+ GY CP+C+A
Sbjct: 181 PPPASSSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRA 239
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQS 371
+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E P L + +N R C+GCQ
Sbjct: 240 KYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEE-YNGERF-CYGCQGE 294
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 295 L-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 328
>UNIPROTKB|J3KQC7 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028
PROSITE:PS50234 SMART:SM00327 SMART:SM01047 InterPro:IPR007198
GO:GO:0005634 GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
EMBL:AC044797 PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HGNC:HGNC:4656 ProteinModelPortal:J3KQC7 Ensembl:ENST00000425596
Uniprot:J3KQC7
Length = 338
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 149/339 (43%), Positives = 204/339 (60%)
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 1 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 60
Query: 145 TDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
T+L G+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TC
Sbjct: 61 TELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTC 120
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXX 262
DP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 121 DPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVS 180
Query: 263 XXXXXXXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKA 311
SLI+MGFPQ + S S+ + G+ GY CP+C+A
Sbjct: 181 PPPASSSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRA 239
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQS 371
+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E P L + +N R C+GCQ
Sbjct: 240 KYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-P--LEE-YNGERF-CYGCQGE 294
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 295 L-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 328
>UNIPROTKB|E2R5I8 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 EMBL:AAEX03001498 EMBL:AAEX03001499
Ensembl:ENSCAFT00000036248 Uniprot:E2R5I8
Length = 335
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 148/339 (43%), Positives = 201/339 (59%)
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 1 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 60
Query: 145 TDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
T+L G+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TC
Sbjct: 61 TELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTC 120
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXX 262
DP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 121 DPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVS 180
Query: 263 XXXXXXXXXXXSLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKA 311
SLI+MGFPQ + S S+ + G+ GY CP+C+A
Sbjct: 181 PPPASSSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRA 239
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQS 371
+ CELP EC+ICGL LVS+PHLARSYHHLFP+ PF E P L + HN R F
Sbjct: 240 KYCELPVECKICGLTLVSAPHLARSYHHLFPLDPFQEI-P--LEE-HNGERYMSFDFY-- 293
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
LL C C+ FC++CD+++H+SLH CPGC
Sbjct: 294 LLH-------VYVCAVCQNVFCVDCDVFVHDSLHCCPGC 325
>WB|WBGene00011814 [details] [associations]
symbol:T16H12.4 species:6239 "Caenorhabditis elegans"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000433 InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS01357 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0010171 GO:GO:0040011
GO:GO:0006351 EMBL:Z30662 eggNOG:COG5151
GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415 KO:K03142
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
PIR:S42385 RefSeq:NP_499239.1 ProteinModelPortal:P34567 SMR:P34567
IntAct:P34567 MINT:MINT-1042120 STRING:P34567 PaxDb:P34567
EnsemblMetazoa:T16H12.4.1 EnsemblMetazoa:T16H12.4.2 GeneID:176421
KEGG:cel:CELE_T16H12.4 UCSC:T16H12.4.1 CTD:176421 WormBase:T16H12.4
InParanoid:P34567 NextBio:892506 Uniprot:P34567
Length = 376
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 151/386 (39%), Positives = 213/386 (55%)
Query: 30 WERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE YA+ + + L EDE G + + A Y A +R+ R LT RI+ G++R++
Sbjct: 11 WEAGYAEGLNINDVLVEDEGGSIEK--SIAKYVADSKRKAR---LTKRPERIRLGIMRHV 65
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
IVID SR PSR VVV K ++ F+ FF+QNP++QIGL+T KD A+ LT +
Sbjct: 66 MIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADRLTMMT 125
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+ ++L + + C GD S+QNAL L L +P + REV+++ SALST DPG+
Sbjct: 126 GNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLVISALSTIDPGN 185
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXXX 266
I TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H +
Sbjct: 186 IYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHTLPPSS 245
Query: 267 XXXXXXXSLIKMGFPQRAGEGSISICSCHKEVK--IGVGYTCPRCKARVCELPTECRICG 324
+ I +GFP + S C CH + K G+ C +C AR C +P EC +C
Sbjct: 246 AKSSECNA-IHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARHCSIPAECPVCK 304
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
L LV++P LAR++ HL P++ F++ ++R C+ C+ L G +
Sbjct: 305 LTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACETRLSGEGFR------ 349
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGC 410
C C+ FCL+CD +HESLH CPGC
Sbjct: 350 CGSCQLVFCLDCDTLLHESLHVCPGC 375
>CGD|CAL0004620 [details] [associations]
symbol:orf19.1457 species:5476 "Candida albicans" [GO:0005675
"holo TFIIH complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0000112 "nucleotide-excision repair factor 3 complex"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 CGD:CAL0004620 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG5151 KO:K03142 PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 RefSeq:XP_722368.1
RefSeq:XP_722507.1 ProteinModelPortal:Q5ALX0 STRING:Q5ALX0
GeneID:3635800 GeneID:3635972 KEGG:cal:CaO19.1457
KEGG:cal:CaO19.9032 Uniprot:Q5ALX0
Length = 507
Score = 350 (128.3 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 82/227 (36%), Positives = 131/227 (57%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA---TARIQKGLIR 86
WE Y RSW+ +++DE G NS + A + + R + + Q+G+IR
Sbjct: 59 WEDEY--QRSWDIVKDDEQG-----GNS--FEAMVQSIIENRKKKIMKNPSTPFQRGIIR 109
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
L I+ID S A +E D RP+R+ + ++ FV EFFDQNP+S++G++ +++GVAN +++
Sbjct: 110 TLIIIIDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSE 169
Query: 147 LGGSPESHI------KALM-GKLGCSGDSSIQNALDLVHGLLN------QIPSYGHREVL 193
+ GSP+ H+ KA + GD S+QN+L++ LL S +E+L
Sbjct: 170 VSGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEIL 229
Query: 194 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET 240
+++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T
Sbjct: 230 VIFGALFTSDPGDIHKTIDSLVKDEIKASVIGLSAQVAICQELVNRT 276
Score = 306 (112.8 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 58/122 (47%), Positives = 74/122 (60%)
Query: 302 VGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNIS 361
+GY CP+CK +VC LPT C +CGL L+ S HLARSYHHL P+AP+ E S + D
Sbjct: 391 IGYQCPQCKCKVCNLPTICPVCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYD----- 445
Query: 362 RST-CFGCQQSL---LASGNKAGLCVA-------CPKCKKHFCLECDIYIHESLHNCPGC 410
ST CFGCQ + G G + C KC + FC+ CD+++HE LHNCPGC
Sbjct: 446 -STYCFGCQLKFPEGVKLGTHKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGC 504
Query: 411 ES 412
E+
Sbjct: 505 EN 506
>GENEDB_PFALCIPARUM|MAL13P1.76 [details] [associations]
symbol:MAL13P1.76 "TFIIH basal transcription
factor subunit" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR001841 InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50089 PROSITE:PS50234 SMART:SM00184
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
EMBL:AL844509 KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
RefSeq:XP_001349885.1 ProteinModelPortal:Q8IEG6
EnsemblProtists:MAL13P1.76:mRNA GeneID:813966 KEGG:pfa:MAL13P1.76
EuPathDB:PlasmoDB:PF3D7_1314900 HOGENOM:HOG000280848
ProtClustDB:CLSZ2432327 Uniprot:Q8IEG6
Length = 401
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 114/385 (29%), Positives = 197/385 (51%)
Query: 30 WERSYADDRSWEALQEDESGFLRPI--DNSAIYHAQYRRRLRGRSLTVATARIQKGLIRY 87
WE+ +RSW L E+ +G L+ + +N+ + + R+ +G SL +KG+ R+
Sbjct: 36 WEQDV--ERSWNLLVEN-NGVLQHVSQENNENENKEKYRKNQGSSL-------RKGIFRH 85
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
+ I+ D+S + E D +P R+ V + VE+F++ FF +NP+ +G+V +K+ A +
Sbjct: 86 IIILFDMSSSMKERDLKPDRINVALECVESFLKNFFFKNPVGHVGVVALKNSSAKLIQPF 145
Query: 148 GGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
+ + + +++ + G G S++ L + H LL +P YG +EVLI+Y ++ TCD
Sbjct: 146 TSNVDDILNSILKERTAGLQGSPSLEEGLQIAHDLLIDMPLYGTKEVLIMYGSIRTCDKK 205
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXX 265
+I+ ++ +S I + I ++ EM I KH+C+++ G Y + +S
Sbjct: 206 NILNVLELLVKSNIYVNCISIAPEMHILKHICEKSNGFYKIC-SSKNSLMNEINNNAETP 264
Query: 266 XXXXXXXXSLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGL 325
LI + FP + + +CSCH ++ Y C C + C++P++C++CG+
Sbjct: 265 LWMQGMEPQLIHICFPTKKKISTQIMCSCHGKLNTDT-YVCNFCNSYTCKIPSKCKVCGI 323
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVAC 385
L+S L+ ++L F E N+ N C C Q L NK C
Sbjct: 324 HLISMHDLSHITNNLQGSPLFIEIK----NEQGNYK--VCSSCNQQLY---NKI---YQC 371
Query: 386 PKCKKHFCLECDIYIHESLHNCPGC 410
KC+ FCLECDI+IHE L+ CP C
Sbjct: 372 TKCQHIFCLECDIFIHEELNQCPFC 396
>UNIPROTKB|Q8IEG6 [details] [associations]
symbol:Ssl-like protein "TFIIH basal transcription factor
subunit" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR001841 InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50089 PROSITE:PS50234 SMART:SM00184
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
EMBL:AL844509 KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
RefSeq:XP_001349885.1 ProteinModelPortal:Q8IEG6
EnsemblProtists:MAL13P1.76:mRNA GeneID:813966 KEGG:pfa:MAL13P1.76
EuPathDB:PlasmoDB:PF3D7_1314900 HOGENOM:HOG000280848
ProtClustDB:CLSZ2432327 Uniprot:Q8IEG6
Length = 401
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 114/385 (29%), Positives = 197/385 (51%)
Query: 30 WERSYADDRSWEALQEDESGFLRPI--DNSAIYHAQYRRRLRGRSLTVATARIQKGLIRY 87
WE+ +RSW L E+ +G L+ + +N+ + + R+ +G SL +KG+ R+
Sbjct: 36 WEQDV--ERSWNLLVEN-NGVLQHVSQENNENENKEKYRKNQGSSL-------RKGIFRH 85
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
+ I+ D+S + E D +P R+ V + VE+F++ FF +NP+ +G+V +K+ A +
Sbjct: 86 IIILFDMSSSMKERDLKPDRINVALECVESFLKNFFFKNPVGHVGVVALKNSSAKLIQPF 145
Query: 148 GGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
+ + + +++ + G G S++ L + H LL +P YG +EVLI+Y ++ TCD
Sbjct: 146 TSNVDDILNSILKERTAGLQGSPSLEEGLQIAHDLLIDMPLYGTKEVLIMYGSIRTCDKK 205
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXXXXXXXXXXX 265
+I+ ++ +S I + I ++ EM I KH+C+++ G Y + +S
Sbjct: 206 NILNVLELLVKSNIYVNCISIAPEMHILKHICEKSNGFYKIC-SSKNSLMNEINNNAETP 264
Query: 266 XXXXXXXXSLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGL 325
LI + FP + + +CSCH ++ Y C C + C++P++C++CG+
Sbjct: 265 LWMQGMEPQLIHICFPTKKKISTQIMCSCHGKLNTDT-YVCNFCNSYTCKIPSKCKVCGI 323
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVAC 385
L+S L+ ++L F E N+ N C C Q L NK C
Sbjct: 324 HLISMHDLSHITNNLQGSPLFIEIK----NEQGNYK--VCSSCNQQLY---NKI---YQC 371
Query: 386 PKCKKHFCLECDIYIHESLHNCPGC 410
KC+ FCLECDI+IHE L+ CP C
Sbjct: 372 TKCQHIFCLECDIFIHEELNQCPFC 396
>UNIPROTKB|D6RID8 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002035 InterPro:IPR012170 SMART:SM00327
InterPro:IPR007198 EMBL:AC147575 HOGENOM:HOG000159415
PANTHER:PTHR12695 Pfam:PF04056 HGNC:HGNC:31394 EMBL:AC145102
IPI:IPI00964847 ProteinModelPortal:D6RID8 Ensembl:ENST00000507595
ArrayExpress:D6RID8 Bgee:D6RID8 Uniprot:D6RID8
Length = 253
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 79/206 (38%), Positives = 115/206 (55%)
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+++ G++R+LY+V+D SR + D +P+R+ K IG++ K
Sbjct: 52 QVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLK-----------------IGIIVTKS 94
Query: 139 GVANCLTDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
A LT+L G+P HI +L + C G+ S+ N+L + L +P + REVLI++
Sbjct: 95 KRAEKLTELSGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIF 154
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKXX 256
S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 155 SSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKEL 214
Query: 257 XXXXXXXXXXXXXXXXXSLIKMGFPQ 282
SLI+MGFPQ
Sbjct: 215 LTHHLSPPPASSSSEC-SLIRMGFPQ 239
Score = 129 (50.5 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAK 113
+V+D SR + D +P+R+ K
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLK 86
>UNIPROTKB|D4A6E9 [details] [associations]
symbol:Gtf2h2 "General transcription factor IIH subunit 2"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] InterPro:IPR012170 InterPro:IPR007198 RGD:1310499
PANTHER:PTHR12695 Pfam:PF04056 IPI:IPI00205328
Ensembl:ENSRNOT00000019962 ArrayExpress:D4A6E9 Uniprot:D4A6E9
Length = 201
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 57/155 (36%), Positives = 90/155 (58%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLN 182
+P HI +L + C G+ S+ N+L + LN
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLN 157
>UNIPROTKB|D6RJD3 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR012170 InterPro:IPR007198 EMBL:AC147575
PANTHER:PTHR12695 Pfam:PF04056 HGNC:HGNC:31394 HGNC:HGNC:35418
OrthoDB:EOG4M0F1X EMBL:AC138827 EMBL:AC145102 HOGENOM:HOG000147843
IPI:IPI00973412 Ensembl:ENST00000512736 Ensembl:ENST00000570722
UCSC:uc003jww.1 Uniprot:D6RJD3
Length = 165
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 55/149 (36%), Positives = 88/149 (59%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDL 176
+P HI +L + C G+ S+ N+L +
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSM 151
>UNIPROTKB|D6RGC9 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit 2"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR012170 InterPro:IPR007198 EMBL:AC044797
EMBL:AC147575 PANTHER:PTHR12695 Pfam:PF04056 HGNC:HGNC:31394
HGNC:HGNC:4656 EMBL:AC142525 EMBL:AC145102 IPI:IPI00964302
SMR:D6RGC9 Ensembl:ENST00000514162 Ensembl:ENST00000517900
Ensembl:ENST00000576299 HOGENOM:HOG000147843 Uniprot:D6RGC9
Length = 123
Score = 227 (85.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 46/120 (38%), Positives = 72/120 (60%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
>UNIPROTKB|D6RIT7 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR012170 InterPro:IPR007198 EMBL:AC147575
PANTHER:PTHR12695 Pfam:PF04056 HGNC:HGNC:31394 EMBL:AC145102
HOGENOM:HOG000147843 IPI:IPI00964639 ProteinModelPortal:D6RIT7
Ensembl:ENST00000506129 ArrayExpress:D6RIT7 Bgee:D6RIT7
Uniprot:D6RIT7
Length = 92
Score = 133 (51.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHG------QVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVE 116
+V+D SR + D +P+R+ K+ +
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKETQ 89
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 424 384 0.00091 117 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 612 (65 KB)
Total size of DFA: 266 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.18u 0.15s 30.33t Elapsed: 00:00:01
Total cpu time: 30.19u 0.15s 30.34t Elapsed: 00:00:01
Start: Fri May 10 21:17:31 2013 End: Fri May 10 21:17:32 2013