BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014440
(424 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297746227|emb|CBI16283.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/401 (82%), Positives = 359/401 (89%), Gaps = 1/401 (0%)
Query: 24 NG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQK 82
NG GL+AWER+YAD+RSWE+LQEDESG LRPIDN IYHAQYRRR+R + TARIQK
Sbjct: 93 NGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQK 152
Query: 83 GLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 142
GLIRYLYIV+DLSRAA+EMDF+PSRM VVAK +EAF+REFFDQNPLSQIGLVT+KDG+A
Sbjct: 153 GLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQ 212
Query: 143 CLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
CLTDLGGSP+SH+KALMGKL CSGDSS+QNALDLVHG LNQIPSYGHREVLILYSALSTC
Sbjct: 213 CLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTC 272
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAP 262
DPGDIMETIQ+CK+SKIRCSVIGLSAE+FIC+HLCQETGG+YSVALDESH KEL+LEHAP
Sbjct: 273 DPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAP 332
Query: 263 PPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRI 322
PPPAIAEFAIA+LIKMGFPQRA EG ISICSCHKE K+G GYTCPRCKARVCELPTECRI
Sbjct: 333 PPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRI 392
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLC 382
CGL LVSSPHLARSYHHLFPI PFDE + S LN+ H S CFGCQ+SLL GNK LC
Sbjct: 393 CGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLC 452
Query: 383 VACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANE 423
VACPKCK+HFCL+CDIYIHESLHNCPGCES R S V E
Sbjct: 453 VACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 493
>gi|225435253|ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
vinifera]
Length = 433
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/401 (82%), Positives = 359/401 (89%), Gaps = 1/401 (0%)
Query: 24 NG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQK 82
NG GL+AWER+YAD+RSWE+LQEDESG LRPIDN IYHAQYRRR+R + TARIQK
Sbjct: 32 NGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQK 91
Query: 83 GLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 142
GLIRYLYIV+DLSRAA+EMDF+PSRM VVAK +EAF+REFFDQNPLSQIGLVT+KDG+A
Sbjct: 92 GLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQ 151
Query: 143 CLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
CLTDLGGSP+SH+KALMGKL CSGDSS+QNALDLVHG LNQIPSYGHREVLILYSALSTC
Sbjct: 152 CLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTC 211
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAP 262
DPGDIMETIQ+CK+SKIRCSVIGLSAE+FIC+HLCQETGG+YSVALDESH KEL+LEHAP
Sbjct: 212 DPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAP 271
Query: 263 PPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRI 322
PPPAIAEFAIA+LIKMGFPQRA EG ISICSCHKE K+G GYTCPRCKARVCELPTECRI
Sbjct: 272 PPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRI 331
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLC 382
CGL LVSSPHLARSYHHLFPI PFDE + S LN+ H S CFGCQ+SLL GNK LC
Sbjct: 332 CGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLC 391
Query: 383 VACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANE 423
VACPKCK+HFCL+CDIYIHESLHNCPGCES R S V E
Sbjct: 392 VACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 432
>gi|357509341|ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355499974|gb|AES81177.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 426
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/399 (79%), Positives = 354/399 (88%), Gaps = 4/399 (1%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
GLEAWER+Y +DRSWE+LQEDESG LRPID +AI+HAQYRRRLR + ATARIQKGLI
Sbjct: 25 GLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLI 84
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
RYLYIV+DLS+AA+E DFRPSRM V+AKQVE F+REFFDQNPLS +GLVT KDGVANCLT
Sbjct: 85 RYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLT 144
Query: 146 DLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
DLGGSPESHIKALMGKL CSGD+S+QNAL+LVH LNQIPSYGHREVLILYSALSTCDPG
Sbjct: 145 DLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPG 204
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP 265
D+METIQKCK+SKIRCSVIGL+AEMFICKHLCQETGGTYSVALDESH KELILEH+PPPP
Sbjct: 205 DLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPP 264
Query: 266 AIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGL 325
AIAE+A A+LIKMGFPQRA EGS++IC+CH+E K G GYTCPRCK RVCELPTECR+CGL
Sbjct: 265 AIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGL 324
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA----SGNKAGL 381
L+SSPHLARSYHHLFPI PF E +PS ND ++ +TCFGCQQSLL+ +GNKA L
Sbjct: 325 TLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQSLLSQGFGAGNKAEL 384
Query: 382 CVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVV 420
V+CPKCK+ FCL+CD+YIHESLHNCPGCES R S V
Sbjct: 385 SVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSKSVT 423
>gi|224119296|ref|XP_002331276.1| predicted protein [Populus trichocarpa]
gi|222873701|gb|EEF10832.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/388 (82%), Positives = 348/388 (89%), Gaps = 1/388 (0%)
Query: 30 W-ERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
W ER+Y+D+RSWEALQEDESG LRP+DN A+YHAQYRRRLR S + RIQKGLIR+L
Sbjct: 25 WGERNYSDERSWEALQEDESGLLRPLDNKAMYHAQYRRRLRSLSTASNSQRIQKGLIRFL 84
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
YIV+DLSRAA+ MDFRPSRM VVA+ VEAF+REFFDQNPLSQI LVT+KDGVA LT+LG
Sbjct: 85 YIVLDLSRAASVMDFRPSRMAVVAQNVEAFIREFFDQNPLSQIALVTIKDGVAYSLTELG 144
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
GSPESHIKALM KL CSGDSS+QNAL+LVH L++IPSYG+REVLILYSAL+TCDPGDIM
Sbjct: 145 GSPESHIKALMAKLECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDPGDIM 204
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIA 268
ETIQKCK+SK+RCSVIGLSAEMFICKHLCQETGG YSVALDESH KELILEHAPPPPAIA
Sbjct: 205 ETIQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPPAIA 264
Query: 269 EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
EFAIA+LIKMGFPQRA EGSISICSCHKE K+G GY CPRCKARVCELPTECRICGL LV
Sbjct: 265 EFAIANLIKMGFPQRAAEGSISICSCHKESKVGEGYICPRCKARVCELPTECRICGLTLV 324
Query: 329 SSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKC 388
SSPHLARSYHHLFPIAPFDE PSR N+ H S+ TCFGCQQSL+ GNK L VACPKC
Sbjct: 325 SSPHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVACPKC 384
Query: 389 KKHFCLECDIYIHESLHNCPGCESLRQS 416
K++FCL+CDIYIHESLHNCPGCESLR S
Sbjct: 385 KQYFCLDCDIYIHESLHNCPGCESLRAS 412
>gi|449451946|ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
sativus]
Length = 423
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/425 (75%), Positives = 364/425 (85%), Gaps = 4/425 (0%)
Query: 1 MKNSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIY 60
M N E RLNGEA+EE ++++ GL AWER+YADDRSWEALQEDESG LRPIDN AIY
Sbjct: 1 MNNGENRRLNGEADEE--DDDDDANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIY 58
Query: 61 HAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVR 120
HAQYRRRLR S TARIQKGLIRYLYIVID S+AA EMDFRPSRM VVAK V+AFVR
Sbjct: 59 HAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVR 118
Query: 121 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGL 180
EFFDQNPLSQIGLVT+KDG ANCLTDLGGSPESH+KALMGKL CSGD+S+QN L+LVH
Sbjct: 119 EFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSY 178
Query: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET 240
LNQIPSYGHREVL+LYSAL++CDPGDIMET+QKCK SKIRCSVIGL+AE+FIC+HLCQET
Sbjct: 179 LNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQET 238
Query: 241 GGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKI 300
GG+YSVALDESH KEL+LEHAPPPPAIA+ A+ +LIKMGFPQRA E SI+ICSCHKE K+
Sbjct: 239 GGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKV 298
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNI 360
G GYTCPRCKARVCELPTECRICGL L+SSPHLARSYHHLFPI PFDE + +D +
Sbjct: 299 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQ 358
Query: 361 SRSTCFGCQQSLL--ASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNP 418
CFGCQ+SL+ ++GN + V+CPKCK+HFCL+CDIYIHESLHNCPGCES R+
Sbjct: 359 LPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKL 418
Query: 419 VVANE 423
++E
Sbjct: 419 ATSDE 423
>gi|356571915|ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
max]
Length = 420
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/397 (79%), Positives = 357/397 (89%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YA+DRSWEALQEDESG LRPID +AIYHAQYRRRLR + T ATARIQKGLIR
Sbjct: 24 LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIV+DLS+AA+E DFRPSRM V+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+
Sbjct: 84 YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
LGGSPESHIKALMGKL CSGD+S+QNAL+LV G LNQIPSYGHREVLILYSALSTCDPGD
Sbjct: 144 LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
+METIQKCK+SKIRCSVIGL+AEMF+CKHLCQETGGTYSVALDESH KELILEHAPPPPA
Sbjct: 204 LMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPA 263
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQ 326
IAE+A A+LIKMGFPQR+ EGS++IC+CH+E K G GYTCPRCK RVCELPTECR+CGL
Sbjct: 264 IAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLT 323
Query: 327 LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACP 386
L+SSPHLARSYHHLFPI FDE TPS ND ++ +TCFGCQQSLL+ GNK GL V CP
Sbjct: 324 LISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICP 383
Query: 387 KCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANE 423
KCK+ FCL+CDIY+HESLHNCPGCES R S V A++
Sbjct: 384 KCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ 420
>gi|297848764|ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
gi|297338105|gb|EFH68522.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
Length = 421
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/395 (79%), Positives = 343/395 (86%), Gaps = 1/395 (0%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
G+ WER+Y DDRSWE LQEDESG LRPIDNSAIYHAQYRRRLR S A RIQKGLI
Sbjct: 22 GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLI 81
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
RYLYIVID SRAAAEMDFRPSRM ++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LT
Sbjct: 82 RYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLT 141
Query: 146 DLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
DLGGSPE+HIKALMGKL GDSS+QNAL+LVH LNQ+PSYGHREVLILYSAL TCDPG
Sbjct: 142 DLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPG 201
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP 265
DIMETIQKCK+SK+RCSVIGLSAEMFICKHLCQETGG YSVA+DE H K+L+LEHAPPPP
Sbjct: 202 DIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPP 261
Query: 266 AIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGL 325
AIAEFAIA+LIKMGFPQRA EGS++ICSCHKEVKIG GY CPRCKARVC+LPTEC ICGL
Sbjct: 262 AIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGL 321
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATP-SRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
LVSSPHLARSYHHLFPIAPFDE S LND +CFGCQQSL+ +GNK G CV
Sbjct: 322 TLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPGPCVT 381
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPV 419
C KCK +FCL+CDIYIHESLHNCPGCES+ + V
Sbjct: 382 CRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV 416
>gi|30679101|ref|NP_683275.2| transcription initiation factor TFIIH subunit H2 [Arabidopsis
thaliana]
gi|22087278|gb|AAM90909.1|AF499443_1 p44/SSL1-like protein [Arabidopsis thaliana]
gi|4056421|gb|AAC97995.1| Similar to gb|Z30094 basic transcripion factor 2, 44 kD subunit
from Homo sapiens. EST gb|W43325 comes from this gene
[Arabidopsis thaliana]
gi|110738828|dbj|BAF01337.1| putative transcription factor [Arabidopsis thaliana]
gi|332189663|gb|AEE27784.1| transcription initiation factor TFIIH subunit H2 [Arabidopsis
thaliana]
Length = 421
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/395 (79%), Positives = 342/395 (86%), Gaps = 1/395 (0%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
G+ WER+Y DDRSWE LQEDESG LRPIDNSAIYHAQYRRRLR S A RIQKGLI
Sbjct: 22 GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLI 81
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
RYLYIVID SRAAAEMDFRPSRM ++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LT
Sbjct: 82 RYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLT 141
Query: 146 DLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
DLGGSPE+HIKALMGKL GDSS+QNAL+LVH LNQ+PSYGHREVLILYSAL TCDPG
Sbjct: 142 DLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPG 201
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP 265
DIMETIQKCK+SK+RCSVIGLSAEMFICKHLCQETGG YSVA+DE H K+L+LEHAPPPP
Sbjct: 202 DIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPP 261
Query: 266 AIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGL 325
AIAEFAIA+LIKMGFPQRA EGS++ICSCHKEVKIG GY CPRCKARVC+LPTEC ICGL
Sbjct: 262 AIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGL 321
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATP-SRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
LVSSPHLARSYHHLFPIAPFDE S LND +CFGCQQSL+ +GNK CV
Sbjct: 322 TLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVT 381
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPV 419
C KCK +FCL+CDIYIHESLHNCPGCES+ + V
Sbjct: 382 CRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV 416
>gi|356538258|ref|XP_003537621.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
max]
Length = 419
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/395 (78%), Positives = 355/395 (89%), Gaps = 1/395 (0%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWER+YA+DRSWEALQEDESG LRPID +AIYHAQYRRRLR + T ATARIQKGLIRYL
Sbjct: 26 AWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYL 85
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
YIV+DLS+AA+E DFRPSRMVV+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+LG
Sbjct: 86 YIVVDLSKAASERDFRPSRMVVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELG 145
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
GSPESHIKALMGKL CSGD+S+QNAL+LV G LNQIPSYGHREVLILYSALSTCDPGD+M
Sbjct: 146 GSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLM 205
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIA 268
ETIQKCK+SKIRCSVIGL+AEMF+CKHLC+ETGGTYSVALDESH KELILEHAPPPPAIA
Sbjct: 206 ETIQKCKKSKIRCSVIGLAAEMFVCKHLCEETGGTYSVALDESHFKELILEHAPPPPAIA 265
Query: 269 EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
E++ A+LIKMGFPQR+ EGS++IC+CH+E K G GYTCPRCK RVCELPTECR+CGL L+
Sbjct: 266 EYSTANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLI 325
Query: 329 SSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKC 388
SSPHLARSYHHLFPI FDE TPS+ + + +TCFGCQQSLL+ GNK GL V CPKC
Sbjct: 326 SSPHLARSYHHLFPIVMFDEVTPSQKDSSRSFP-NTCFGCQQSLLSQGNKPGLSVICPKC 384
Query: 389 KKHFCLECDIYIHESLHNCPGCESLRQSNPVVANE 423
K+ FCL+CDIY+HESLHNCPGCES R S V A++
Sbjct: 385 KQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ 419
>gi|357164610|ref|XP_003580110.1| PREDICTED: general transcription factor IIH subunit 2-like
[Brachypodium distachyon]
Length = 428
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/389 (75%), Positives = 333/389 (85%), Gaps = 6/389 (1%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YADDRSWEALQEDESG LRPID + H+QYRRRL RS A RIQKGLIR
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKNLVHSQYRRRLLLRS-AAAAVRIQKGLIR 99
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIVIDLSRAA+EMD+RPSRM VVAK EAF+REFFDQNPLS +GLVT+KDG+++ LTD
Sbjct: 100 YLYIVIDLSRAASEMDYRPSRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTD 159
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+GGSPES IKALMGKL CSGDSS+QNAL+L+HG LNQIPSYGH+EVLILYSAL+TCDPGD
Sbjct: 160 IGGSPESQIKALMGKLECSGDSSLQNALELIHGYLNQIPSYGHKEVLILYSALNTCDPGD 219
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
+MET++KCK+SKIRCSVIGL+AE+FICKHLC+ETGG+Y+VALDESH KEL+LEHAPPPPA
Sbjct: 220 VMETVEKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 279
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARVCELPTECRICGL 325
IAE+A A+LIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPTECR CGL
Sbjct: 280 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 339
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVAC 385
LVSSPHLARSYHHLFP+APFDE T L C+GCQQSL+ S +++ L V C
Sbjct: 340 TLVSSPHLARSYHHLFPVAPFDEVT----FKLGQKGGQNCYGCQQSLINSDSQSNLHVRC 395
Query: 386 PKCKKHFCLECDIYIHESLHNCPGCESLR 414
PKC +HFC +CDIYIHESLHNCPGCES R
Sbjct: 396 PKCNQHFCFDCDIYIHESLHNCPGCESQR 424
>gi|326529607|dbj|BAK04750.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 430
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 291/392 (74%), Positives = 333/392 (84%), Gaps = 6/392 (1%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YADDRSWEAL+ED+SG LRPID + H+QYRRR+ RS A ARIQKGLIR
Sbjct: 43 LEAWERAYADDRSWEALEEDDSGLLRPIDTKNLVHSQYRRRILLRS-AAAAARIQKGLIR 101
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIVIDLSRAA+EMD+RPSRM VVAK EAF+REFFDQNPLS +GLVT+KDG+++ LT+
Sbjct: 102 YLYIVIDLSRAASEMDYRPSRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTE 161
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+GGSPES I ALMGKL CSGDSS+QNAL+LVHG LNQIPSYGH+EVL LYSAL+TCDPGD
Sbjct: 162 IGGSPESQINALMGKLECSGDSSLQNALELVHGYLNQIPSYGHKEVLFLYSALNTCDPGD 221
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
IMETI+KCK+SK+RCSVIGL+AE+FICKHLC+ETGG+Y+VALDESH KEL+LEHAPPPPA
Sbjct: 222 IMETIEKCKKSKVRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 281
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARVCELPTECRICGL 325
IAE+A A+LIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPTECR CGL
Sbjct: 282 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 341
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVAC 385
LVSSPHLARSYHHLFP++PFDE T L CFGCQQSL+ +G ++ + V C
Sbjct: 342 TLVSSPHLARSYHHLFPVSPFDEVT----FKLGQKGGQNCFGCQQSLINTGGQSNIHVRC 397
Query: 386 PKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
PKC HFC +CDIYIHESLHNCPGCES R S+
Sbjct: 398 PKCNHHFCFDCDIYIHESLHNCPGCESQRSSS 429
>gi|255570827|ref|XP_002526366.1| btf, putative [Ricinus communis]
gi|223534325|gb|EEF36037.1| btf, putative [Ricinus communis]
Length = 465
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 296/374 (79%), Positives = 333/374 (89%), Gaps = 5/374 (1%)
Query: 1 MKNSERSRLNGEAEEEDDEEENLNGGLE-AWERSYADDRSWEALQEDESGFLRPIDNSAI 59
M +SER R+NGE EEED +E++++G AWER+Y D+RSWEALQEDESG LRPIDN AI
Sbjct: 1 MSHSERRRMNGEGEEEDGDEDDIDGDGLDAWERTYTDERSWEALQEDESGLLRPIDNKAI 60
Query: 60 YHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFV 119
YHAQYRRR+R S +ARIQKGLIR+LYIV+DLSRAA EMD +PSRMVV+A+ VEAF+
Sbjct: 61 YHAQYRRRIRSLS---TSARIQKGLIRFLYIVVDLSRAAGEMDIKPSRMVVIARHVEAFI 117
Query: 120 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHG 179
REFFDQNPLSQIGLVT+KDGVA+ LT+LGGSPESHIKAL GKL C+GDSS+QNALDLV G
Sbjct: 118 REFFDQNPLSQIGLVTIKDGVAHPLTELGGSPESHIKALTGKLECAGDSSLQNALDLVRG 177
Query: 180 LLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQE 239
L+QIP+YGHREVLILYSALSTCDPGDIMETIQ CK+SKIRCSVIGLSAEMFICKHLCQE
Sbjct: 178 YLDQIPAYGHREVLILYSALSTCDPGDIMETIQNCKKSKIRCSVIGLSAEMFICKHLCQE 237
Query: 240 TGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK 299
TGG YSVA+DE+H KEL+LEHAPPPPAIAEFAIA+LIKMGFPQR+ EGSISICSCHKE K
Sbjct: 238 TGGLYSVAMDETHLKELLLEHAPPPPAIAEFAIANLIKMGFPQRSAEGSISICSCHKEAK 297
Query: 300 IGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHN 359
+G GY CPRCKARVC+LPTECRICGL LVSSPHLARSYHHLFPIAPFDE + R ++L +
Sbjct: 298 VGEGYICPRCKARVCDLPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVS-QRQSELQH 356
Query: 360 ISRSTCFGCQQSLL 373
+ TCFGCQQSLL
Sbjct: 357 RPQKTCFGCQQSLL 370
>gi|242076424|ref|XP_002448148.1| hypothetical protein SORBIDRAFT_06g022140 [Sorghum bicolor]
gi|241939331|gb|EES12476.1| hypothetical protein SORBIDRAFT_06g022140 [Sorghum bicolor]
Length = 431
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/392 (75%), Positives = 332/392 (84%), Gaps = 7/392 (1%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YAD+RSWE+LQEDESG L PID A+ H+QYRRRL RS A ARIQKGLIR
Sbjct: 41 LEAWERAYADERSWESLQEDESGLLHPIDTKALVHSQYRRRLLLRSAAAAAARIQKGLIR 100
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIVIDLSRAA+EMD+RPSRM VVAK EAF+REFFDQNPLS +GLVT+KDG+A+ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTE 160
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+GGSPES IKALMGKL CSGDSS+QNAL+LVHG L+Q+PSYGH+EVLILYSAL+T DPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGDSSLQNALELVHGYLDQVPSYGHKEVLILYSALNTFDPGD 220
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
IMETI KCK+SKIRCSVIGL+AE+FICKHLC+ETGG+Y+VALDESH KEL+LEHAPPPPA
Sbjct: 221 IMETITKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARVCELPTECRICGL 325
IAE+A A+LIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPTECR CGL
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 340
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISR--STCFGCQQSLLASGNKAGLCV 383
LVSSPHLARSYHHLFP+APFDE TP + I R CF CQQSL ++ L V
Sbjct: 341 TLVSSPHLARSYHHLFPVAPFDEVTPVP----NRIQRGGQICFSCQQSLFNPDGQSNLHV 396
Query: 384 ACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
CPKC +HFCL+CDIYIHESLHNCPGCES R
Sbjct: 397 RCPKCNQHFCLDCDIYIHESLHNCPGCESQRN 428
>gi|32489532|emb|CAE04735.1| OSJNBa0043L24.23 [Oryza sativa Japonica Group]
gi|116310777|emb|CAH67570.1| OSIGBa0101P20.13 [Oryza sativa Indica Group]
Length = 432
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/392 (73%), Positives = 331/392 (84%), Gaps = 1/392 (0%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YADDRSWEALQEDESG LRPID + HAQYRRRL RS A ARIQKGLIR
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIR 100
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIVIDLSRAA+EMD+RPSRM VVAK E F+REFFDQNPLS +G+VT+KDG+++ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTE 160
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+GGSPES IKALMGKL CSG+ S+QNAL+LVHG L+Q+PSYGH+EVL LYSAL+TCDPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGD 220
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
IMETI KCK+SKIRCSVIGL+AE+FICK+LC+ETGG+Y+VALDESH KEL+LEHAPPPPA
Sbjct: 221 IMETIAKCKKSKIRCSVIGLAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARVCELPTECRICGL 325
IAE+A A+LIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPTECR CGL
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 340
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVAC 385
LVSSPHLARSYHHLFP+ PFDE + N L C+GCQQS + +++ L V C
Sbjct: 341 TLVSSPHLARSYHHLFPVQPFDEVSSVHPNRLGQKGGQKCYGCQQSFINPDSQSSLHVRC 400
Query: 386 PKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
PKC +HFCL+CDIYIHESLHNCPGCES R S+
Sbjct: 401 PKCNQHFCLDCDIYIHESLHNCPGCESQRSSS 432
>gi|226531944|ref|NP_001142175.1| uncharacterized protein LOC100274342 [Zea mays]
gi|194707472|gb|ACF87820.1| unknown [Zea mays]
gi|414586431|tpg|DAA37002.1| TPA: hypothetical protein ZEAMMB73_625811 [Zea mays]
Length = 428
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 294/391 (75%), Positives = 331/391 (84%), Gaps = 7/391 (1%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YAD+RSWE+LQEDESG LRP+D + HAQYRRRL RS A ARIQKGLIR
Sbjct: 38 LEAWERAYADERSWESLQEDESGLLRPVDTKTLVHAQYRRRLLLRSAAAAAARIQKGLIR 97
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIVIDLSRAA+EMD+RPSRM VVAK EAF+REFFDQNPLS +GLVT+KDG+A+ LT+
Sbjct: 98 YLYIVIDLSRAASEMDYRPSRMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTE 157
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+GGSPES IKALMGKL CSGDSS+QNALDLVHG L+Q+PSYGH+EVLILYSAL+T DPGD
Sbjct: 158 IGGSPESQIKALMGKLECSGDSSLQNALDLVHGYLDQVPSYGHKEVLILYSALNTFDPGD 217
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I ETI KCK+SKIRCSVIGL+AE+FICKHLC+ETGG+Y+VALDESH KEL+LEHAPPPPA
Sbjct: 218 ITETIAKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 277
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARVCELPTECRICGL 325
IAE+A A+LIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPTECR CGL
Sbjct: 278 IAEYAAANLIKMGFPQRGAEELISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 337
Query: 326 QLVSSPHLARSYHHLFPIAPFDEAT--PSRLNDLHNISRSTCFGCQQSLLASGNKAGLCV 383
LVSSPHLARSYHHLFP+ PFDE T P+R+ I CF CQQSL ++ L V
Sbjct: 338 TLVSSPHLARSYHHLFPVPPFDEVTPVPNRIQRGGQI----CFSCQQSLYNPDGQSNLHV 393
Query: 384 ACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
CPKC +HFCL+CDIYIHESLHNCPGCES R
Sbjct: 394 RCPKCNQHFCLDCDIYIHESLHNCPGCESQR 424
>gi|449525401|ref|XP_004169706.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Cucumis sativus]
Length = 329
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/329 (76%), Positives = 287/329 (87%), Gaps = 2/329 (0%)
Query: 97 AAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 156
AA EMDFRPSRM VVAK V+AFVREFFDQNPLSQIGLVT+KDG ANCLTDLGGSPESH+K
Sbjct: 1 AATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVK 60
Query: 157 ALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 216
ALMGKL CSGD+S+QN L+LVH LNQIPSYGHREVL+LYSAL++CDPGDIMET+QKCK
Sbjct: 61 ALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKT 120
Query: 217 SKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLI 276
SKIRCSVIGL+AE+FIC+HLCQETGG+YSVALDESH KEL+LEHAPPPPAIA+ A+ +LI
Sbjct: 121 SKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLI 180
Query: 277 KMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARS 336
KMGFPQRA E SI+ICSCHKE K+G GYTCPRCKARVCELPTECRICGL L+SSPHLARS
Sbjct: 181 KMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARS 240
Query: 337 YHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLL--ASGNKAGLCVACPKCKKHFCL 394
YHHLFPI PFDE + +D + CFGCQ+SL+ ++GN + V+CPKCK+HFCL
Sbjct: 241 YHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCL 300
Query: 395 ECDIYIHESLHNCPGCESLRQSNPVVANE 423
+CDIYIHESLHNCPGCES R+ ++E
Sbjct: 301 DCDIYIHESLHNCPGCESFRRPKLATSDE 329
>gi|168025049|ref|XP_001765047.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683634|gb|EDQ70042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/386 (63%), Positives = 309/386 (80%), Gaps = 9/386 (2%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
A+ER YAD+RSWE LQEDESG LR + AQ +R+ R R +A RIQ+G+IRYL
Sbjct: 6 AFERQYADERSWEELQEDESGMLR------VDVAQQQRQHRKRMSAMAGPRIQRGIIRYL 59
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++++D SRAAAEMD RPSRM +V VEAFVREFFDQNPLS +G++ +KDG+A+ LTDL
Sbjct: 60 FVLLDFSRAAAEMDLRPSRMGIVVDCVEAFVREFFDQNPLSHLGVILLKDGIAHQLTDLS 119
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
GSPE+HI+AL + +GD+SIQN LDL G L QIPSYGHREVL++YSALST DPGD+M
Sbjct: 120 GSPETHIRALRSNMESTGDASIQNGLDLARGYLTQIPSYGHREVLLVYSALSTIDPGDVM 179
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIA 268
ET+Q+CK++ IRCSV+GLSAE++ICK LC++TGG YSVA +E H KELI+EHAPPP A A
Sbjct: 180 ETVQECKKANIRCSVVGLSAEIYICKLLCEQTGGMYSVATNEGHLKELIMEHAPPPAAQA 239
Query: 269 EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
E ++ASL++MGFPQR E ++++C+CH+EVK+G GYTCPRCKARVCELPT+C ICGL LV
Sbjct: 240 EMSVASLVRMGFPQRGAEDAVALCACHREVKMGGGYTCPRCKARVCELPTQCHICGLTLV 299
Query: 329 SSPHLARSYHHLFPIAPFDEA-TPSRLNDLHNISRSTCFGCQQSLLASGNKA-GLCVACP 386
SSPHLARSYHHLFP++PF+E + N ++S+S C+GC Q L G K G+ + CP
Sbjct: 300 SSPHLARSYHHLFPVSPFEEVENLASANGRQSLSKS-CYGCLQELPTPGGKVKGVRLECP 358
Query: 387 KCKKHFCLECDIYIHESLHNCPGCES 412
+C++HFC +CD YIHESLHNCPGCES
Sbjct: 359 RCRQHFCFDCDNYIHESLHNCPGCES 384
>gi|302791231|ref|XP_002977382.1| hypothetical protein SELMODRAFT_232956 [Selaginella moellendorffii]
gi|300154752|gb|EFJ21386.1| hypothetical protein SELMODRAFT_232956 [Selaginella moellendorffii]
Length = 394
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/397 (57%), Positives = 308/397 (77%), Gaps = 8/397 (2%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
EEE+ +EAWER+YADDRSWE+L EDESG L+ D+ RR ++ +
Sbjct: 2 EEEDKAPDMEAWERAYADDRSWESLIEDESGLLKAGDDVQQQRQHRRRLIQA-----SGP 56
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
RIQ+G+IRYL +++D SRAA E+DFRPSRM VVAK VE FVRE+FDQNPLSQ+G++ +K+
Sbjct: 57 RIQRGIIRYLCLILDFSRAAGEIDFRPSRMAVVAKAVEDFVREYFDQNPLSQLGIIVMKN 116
Query: 139 GVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSA 198
G+A+ +T+L GSPE+HI+AL L G++S+QN L+L H + IPSYGHREV+I++SA
Sbjct: 117 GIASVVTELSGSPEAHIRALKSNLESFGEASLQNGLELAHTYVQHIPSYGHREVVIVFSA 176
Query: 199 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL 258
LSTCDPG+I+ET++KCK ++++CSV+GL+AE++ICKH+ QETGG+Y+VA++E H KE++L
Sbjct: 177 LSTCDPGNILETVKKCKAARMKCSVVGLTAEIYICKHISQETGGSYAVAMNEGHLKEILL 236
Query: 259 EHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPT 318
EH PPP A+ + + ASL++MGFPQR EG+++IC+CHKE+KIG GY CPRC+ARVCELPT
Sbjct: 237 EHVPPPAAMPDASSASLVRMGFPQRGSEGAVAICACHKELKIGGGYICPRCRARVCELPT 296
Query: 319 ECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNK 378
EC +CGL LVSS HLARSYHHLFPI FDE + +CFGC+ L SG+
Sbjct: 297 ECSLCGLALVSSAHLARSYHHLFPIPTFDELLVDASLRGKSSFAGSCFGCRIQLSGSGS- 355
Query: 379 AGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
L + CP+CK+ FC +CD+YIHESLHNCPGCE+L++
Sbjct: 356 --LRLRCPRCKRDFCFDCDVYIHESLHNCPGCETLQE 390
>gi|302786380|ref|XP_002974961.1| hypothetical protein SELMODRAFT_232450 [Selaginella moellendorffii]
gi|300157120|gb|EFJ23746.1| hypothetical protein SELMODRAFT_232450 [Selaginella moellendorffii]
Length = 394
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/397 (57%), Positives = 307/397 (77%), Gaps = 8/397 (2%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
EEE+ +EAWER+YADDRSWE+L EDESG L+ D+ RR ++ +
Sbjct: 2 EEEDKAPDMEAWERAYADDRSWESLIEDESGLLKAGDDVQQQRQHRRRLIQA-----SGP 56
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
RIQ+G+IRYL +++D SRAA E+DFRPSRM VVAK VE FVRE+FDQNPLSQ+G++ +K+
Sbjct: 57 RIQRGIIRYLCLILDFSRAAGEIDFRPSRMAVVAKAVEDFVREYFDQNPLSQLGIIVMKN 116
Query: 139 GVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSA 198
G+A+ +T+L GSPE+HI+AL L G++S+QN L+L H + IPSYGHREV+I++SA
Sbjct: 117 GIASVVTELSGSPEAHIRALKSNLESFGEASLQNGLELAHTYVQHIPSYGHREVVIVFSA 176
Query: 199 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL 258
LSTCDPG+I+ET++KCK ++++CSV+GL+AE++ICKH+ QETGG+Y+VA++E H KE++L
Sbjct: 177 LSTCDPGNILETVKKCKAARMKCSVVGLTAEIYICKHISQETGGSYAVAMNEGHLKEILL 236
Query: 259 EHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPT 318
EH PPP A+ + + ASL++MGFPQR EG+++IC+CHKE++IG GY CPRC+ARVCELPT
Sbjct: 237 EHVPPPAAMPDASSASLVRMGFPQRGSEGAVAICACHKELRIGGGYICPRCRARVCELPT 296
Query: 319 ECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNK 378
EC +CGL LVSS HLARSYHHLFPI FDE + +CFGC+ L G+
Sbjct: 297 ECSLCGLALVSSAHLARSYHHLFPIPTFDELLVDASLRGKSSFAGSCFGCRIQLSGGGS- 355
Query: 379 AGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
L + CP+CK+ FC +CD+YIHESLHNCPGCE+L++
Sbjct: 356 --LRLRCPRCKRDFCFDCDVYIHESLHNCPGCETLQE 390
>gi|218195182|gb|EEC77609.1| hypothetical protein OsI_16588 [Oryza sativa Indica Group]
gi|222629181|gb|EEE61313.1| hypothetical protein OsJ_15417 [Oryza sativa Japonica Group]
Length = 509
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/293 (75%), Positives = 255/293 (87%), Gaps = 1/293 (0%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YADDRSWEALQEDESG LRPID + HAQYRRRL RS A ARIQKGLIR
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIR 100
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIVIDLSRAA+EMD+RPSRM VVAK E F+REFFDQNPLS +G+VT+KDG+++ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTE 160
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+GGSPES IKALMGKL CSG+ S+QNAL+LVHG L+Q+PSYGH+EVL LYSAL+TCDPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGD 220
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
IMETI KCK+SKIRCSVIGL+AE+FICK+LC+ETGG+Y+VALDESH KEL+LEHAPPPPA
Sbjct: 221 IMETIAKCKKSKIRCSVIGLAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARVCELPT 318
IAE+A A+LIKMGFPQR E ISICSCHK++K G GY CPRCK + L +
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNIVNLAS 333
>gi|302830270|ref|XP_002946701.1| hypothetical protein VOLCADRAFT_72869 [Volvox carteri f.
nagariensis]
gi|300267745|gb|EFJ51927.1| hypothetical protein VOLCADRAFT_72869 [Volvox carteri f.
nagariensis]
Length = 430
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/411 (45%), Positives = 273/411 (66%), Gaps = 24/411 (5%)
Query: 20 EENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATAR 79
E L EA++R Y ++++W+ LQEDE G L +D +A A+ +R L +AR
Sbjct: 21 ENELRRQEEAYQRQYENEQTWDQLQEDEFGNLF-VDKTAEQRARRKRLLSA----AQSAR 75
Query: 80 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 139
I+KG+IRYL +V+D+SRAA D RP+R+ + +F+REFFDQNPLSQ+G+ ++ G
Sbjct: 76 IRKGMIRYLLLVVDMSRAAKAQDLRPNRLACILGLCRSFIREFFDQNPLSQLGIAVMRGG 135
Query: 140 VANCLTDLGGSPESHIKAL-MGKLGC-SGDSSIQNALDLVHGLLNQIPSYGHREVLILYS 197
+ LTDL GSPE+ + L KLG +GD S+QNALDL +L +P YGHRE+L++++
Sbjct: 136 LVEKLTDLSGSPEAQVARLDAAKLGAPAGDVSLQNALDLSVSVLRSLPPYGHRELLVVFA 195
Query: 198 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELI 257
AL+TCDPG+++++++ CKE+ IR SV+G++AE+++C+ + ++T G+Y VAL+E+H ++L+
Sbjct: 196 ALATCDPGNVLDSVRACKENNIRVSVVGVAAEVYVCRRITEDTRGSYGVALNEAHLEQLL 255
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVG-YTCPRCKARVCEL 316
+ H PPPA A A A L++MGFPQR+ E + S E ++ G YTCPRCK+RV EL
Sbjct: 256 MAHTTPPPATAAQAKAELVRMGFPQRSTEEASSAVFVGLEARLLSGSYTCPRCKSRVPEL 315
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST------------ 364
P EC ICGL L+SSPHLARSYHHLFP+ F E + R ++ + R
Sbjct: 316 PCECHICGLTLISSPHLARSYHHLFPVPSFHEDSKERASEAAAVLRGQPAMRDEVPTSTG 375
Query: 365 --CFGCQQSLLASG--NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
CFGC + + G + L + C +CK+ FC ECD Y+HE LHNCPGCE
Sbjct: 376 LYCFGCLREVSQPGAAGQLHLTLRCGQCKQVFCFECDAYVHEQLHNCPGCE 426
>gi|384251056|gb|EIE24534.1| transcription factor TFIIH, 44 kDa subunit, partial [Coccomyxa
subellipsoidea C-169]
Length = 420
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/417 (47%), Positives = 269/417 (64%), Gaps = 35/417 (8%)
Query: 28 EAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRY 87
EA++R Y D SWEALQEDE G LRP+D A+ RR L ATA I++G+IRY
Sbjct: 1 EAYQRQYEDYFSWEALQEDEFGRLRPLDFREEQRAKRRRLLSA----AATACIRRGMIRY 56
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
L I++DLSRAA+ D RP+R+ V++ ++ F+R+FFD+NPLS +G++ ++DG+A LTD+
Sbjct: 57 LQIIVDLSRAASIGDMRPNRLAVMSGVLQGFIRKFFDENPLSHLGIIVMRDGIAQRLTDM 116
Query: 148 GGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV---LILYSA------ 198
GSPE+HI L G L SGD+S+QNA+D+ L IP YGHRE ++L A
Sbjct: 117 AGSPEAHISKLQGNLDASGDASLQNAMDMAAESLKSIPPYGHREACPQILLKPAHLLVLV 176
Query: 199 ----LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
LSTCDPG++++ ++ K++ IR S++G++AE+ ICK +ETGGTY VAL+E H +
Sbjct: 177 LFAALSTCDPGNVLDAVKAAKQNSIRVSIVGVAAEVHICKVFTKETGGTYGVALNEKHFE 236
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARV 313
+L+ EHAPPPP++A A ASL++MGF R +G K+ K+ G+TCPRCKARV
Sbjct: 237 DLVFEHAPPPPSLATDAAASLVRMGFAHRNQDGVEGTAFIGKDCKLSSGGFTCPRCKARV 296
Query: 314 CELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLL 373
+LP C ICGL L+SSPHLARSYHHLFP+ F E + +C+ C L
Sbjct: 297 VDLPCSCHICGLTLISSPHLARSYHHLFPVKAFTEGDSGAV---------SCYACLADLE 347
Query: 374 ASG------NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANEG 424
S + G+ V CP C + FC +CD +IHE+LHNCPGC L + VA +G
Sbjct: 348 PSSLDDDAPGEVGVVVRCPDCCQLFCFDCDAFIHETLHNCPGCLCLVDDD--VAEDG 402
>gi|303285284|ref|XP_003061932.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456343|gb|EEH53644.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 404
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/420 (45%), Positives = 265/420 (63%), Gaps = 21/420 (5%)
Query: 9 LNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRL 68
+ GE E++D E L A+E+ Y + +WE L EDESG LR YR +
Sbjct: 1 MYGEPEDDDLAAEEQASSLRAFEKHYQSENTWEDLVEDESGMLRVTTGDK----GYREKR 56
Query: 69 RGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPL 128
R +L + + + KG+IR++Y+V+DLS+A E D RPSR+ V++ + F REFF+QNPL
Sbjct: 57 RKIALAASNSHVCKGMIRFVYVVLDLSQAVNEEDMRPSRLAVISSLMYKFFREFFNQNPL 116
Query: 129 SQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYG 188
SQ+GLV ++G+A +T+L G+PE+HI AL L +GD SIQN+L+ VH L Q+P YG
Sbjct: 117 SQLGLVVTRNGIAERVTELSGNPETHIAALKENLDAAGDMSIQNSLEQVHASLVQLPMYG 176
Query: 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL 248
REVL + SALSTCDPG++ I K +KIR SV+ ++AEM +C+ + +ETGG + VA
Sbjct: 177 SREVLFVVSALSTCDPGNVHTAIAAAKNAKIRVSVVSVAAEMHVCRRMTEETGGIFGVAQ 236
Query: 249 DESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPR 308
+ H +EL++ HAPPPP E SL++MGFPQ+ + S G Y CPR
Sbjct: 237 SQHHLEELLMAHAPPPPLNEESTKPSLVEMGFPQKRPLDKDAFFSGR-----GGDYVCPR 291
Query: 309 CKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC 368
CK+RV ELP++C +C L LVSS HLARSYHHLFP+ PF E L+D ++CF C
Sbjct: 292 CKSRVEELPSQCTVCKLTLVSSAHLARSYHHLFPVPPFTEGF--GLDD-EGKRHTSCFAC 348
Query: 369 ----QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANEG 424
++ ++ N+ V CPKCKK FC CD+YIHE LHNCPGCE ++ +A EG
Sbjct: 349 YVDFEEGNESTSNENAPSV-CPKCKKTFCFVCDVYIHEKLHNCPGCELVK----FLAEEG 403
>gi|159490896|ref|XP_001703409.1| transcription factor TFIIH, 44 kDa subunit [Chlamydomonas
reinhardtii]
gi|158280333|gb|EDP06091.1| transcription factor TFIIH, 44 kDa subunit [Chlamydomonas
reinhardtii]
Length = 413
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 191/391 (48%), Positives = 279/391 (71%), Gaps = 15/391 (3%)
Query: 28 EAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRY 87
EA++R Y ++++W+ LQEDE G L +D +A A+ +R L +ARI+KG+IRY
Sbjct: 30 EAYQRQYENEQTWDQLQEDEHGNLF-VDKTAEQRARRQRLLSA----AQSARIRKGMIRY 84
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
+ +V+DLSRAA+ D RP+R+ + +FVREFFDQNPLSQ+G+ ++ G+ LTDL
Sbjct: 85 VLLVVDLSRAASAQDLRPNRLGCMLSLCRSFVREFFDQNPLSQLGIAVMRGGLVEKLTDL 144
Query: 148 GGSPESHIKAL-MGKLGC-SGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
GSPE+ + L GKLG +GD+S+QNAL+L LL Q+P YGHRE+L+L++AL++CDPG
Sbjct: 145 SGSPEAQVARLDAGKLGAPAGDASLQNALELGVSLLKQLPPYGHRELLLLFAALASCDPG 204
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP 265
+++++++ CK++ IR SV+G++AE+++C+ + ++TGGTY VAL+E H ++L++ H+PPPP
Sbjct: 205 NVLDSVKACKDNNIRVSVVGVAAEVYVCRRITEDTGGTYGVALNEGHLEQLLMAHSPPPP 264
Query: 266 AIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVG-YTCPRCKARVCELPTECRICG 324
A A A A L++MGFPQR+ E + S +E ++ G YTCPRC++RV ELP EC CG
Sbjct: 265 ATAAQAKAELVRMGFPQRSTEEASSAVFVGQEARLLPGSYTCPRCRSRVPELPVECHTCG 324
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAG--LC 382
L L+SSPHLARSYHHLFP+ P+ E + ++ + + CFGC + + G K L
Sbjct: 325 LTLISSPHLARSYHHLFPVQPYHEDS-----EVMTTTGAYCFGCLREVSEPGVKGQLHLT 379
Query: 383 VACPKCKKHFCLECDIYIHESLHNCPGCESL 413
+ C +CK+ FC ECD Y+HESLHNCPGCE L
Sbjct: 380 LRCGQCKQVFCFECDAYVHESLHNCPGCEFL 410
>gi|255073175|ref|XP_002500262.1| predicted protein [Micromonas sp. RCC299]
gi|226515524|gb|ACO61520.1| predicted protein [Micromonas sp. RCC299]
Length = 427
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/404 (45%), Positives = 248/404 (61%), Gaps = 40/404 (9%)
Query: 37 DRSWEALQEDESGFLRPIDNSAIYHA--QYRRRLRGRSLTVATARIQKGLIRYLYIVIDL 94
+R+WE L+EDE+G LR I H QYR + R ++ A + + KG+IR+LY+V+DL
Sbjct: 24 ERTWEDLEEDETGRLR------ITHGDKQYREKRRKIAMAAANSHVCKGMIRFLYVVVDL 77
Query: 95 SRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 154
S+A E D RPSR+ VV+ + F RE+F+QNPLSQ+GLV ++G+A LT+L GSPESH
Sbjct: 78 SQAVNEADMRPSRLAVVSGILYKFFREYFNQNPLSQLGLVVTRNGIAERLTELSGSPESH 137
Query: 155 IKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKC 214
I AL L +GD SIQN+L+ V L Q+P+YG REVL + SALS+CDPG++ I
Sbjct: 138 ITALKENLEAAGDMSIQNSLEQVQSSLAQLPTYGTREVLFVVSALSSCDPGNVHTAIAAA 197
Query: 215 KESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIAS 274
K + IR SV+ ++AE+ IC+ + +ETGG + V+ + H ++L++ HAPPPP + AS
Sbjct: 198 KSANIRVSVVSVAAELHICRRMTEETGGMFGVSQSQHHLEDLLMAHAPPPPLNEQATKAS 257
Query: 275 LIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARV--------------------- 313
L++MGFPQ+ + S G Y CPRC +RV
Sbjct: 258 LVEMGFPQKRPLDKGAFFSGR-----GGEYVCPRCASRVEVNPTHPKFVENIKINNPVTF 312
Query: 314 -CELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATP---SRLNDLHNISRSTCFGCQ 369
ELP +C +C L LVSSPHLARSYHHLFP+APF+ P LND + + CF C
Sbjct: 313 LQELPAQCSVCSLTLVSSPHLARSYHHLFPVAPFEVHRPVIMQELNDAAKLDATNCFACN 372
Query: 370 QSLLASGNKAG--LCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
SG + CP+CKK +C +CD++IHE LHNCPGCE
Sbjct: 373 LKFDRSGARGNDDAPSVCPRCKKIYCFQCDVFIHEKLHNCPGCE 416
>gi|281212115|gb|EFA86276.1| TFIIH subunit [Polysphondylium pallidum PN500]
Length = 438
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 245/383 (63%), Gaps = 21/383 (5%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE + +R+W+ ++EDESG LRP Q R +R R + R+++G+ R++
Sbjct: 47 WESQF--ERTWDDIEEDESG-LRP-------SLQEERIMRTRRQRIDAQRVRRGMQRHIC 96
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++DLS+ A D +PSR + E+F++EFFDQNP+SQI L+ K+ A LT+L G
Sbjct: 97 LIVDLSKTLASQDMKPSRHQCLLNSSESFIKEFFDQNPISQISLIVTKNSKAEKLTELNG 156
Query: 150 SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIME 209
+P HI AL GD SIQN+L++ L+ +P YG RE++++YS+L+TCDPGD+ +
Sbjct: 157 NPNRHITALKNTSAMEGDPSIQNSLEVAISTLSHVPKYGSREIIVIYSSLTTCDPGDLTK 216
Query: 210 TIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAE 269
TI+ K +IR S I ++AE+FICKH+ ++T GT V L+E H E ++ H PPP +
Sbjct: 217 TIEILKNEQIRVSFIHMAAELFICKHISEQTHGTMKVVLNEEHFNECLMLHCQPPPTFGK 276
Query: 270 FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVS 329
A+L++MGFPQ+ +C CH++++ VGYTCPRC ++ CELPT+C+IC L LVS
Sbjct: 277 TE-AALVEMGFPQQHTSSIPMMCMCHEQLRY-VGYTCPRCSSKFCELPTDCQICNLSLVS 334
Query: 330 SPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCK 389
SPHLARSYHHLF + F E L + +CFGC L + L CP+CK
Sbjct: 335 SPHLARSYHHLFQVPLFTEINWRELK-----TEISCFGC----LTVPKSSSLFFGCPRCK 385
Query: 390 KHFCLECDIYIHESLHNCPGCES 412
+ FC ECD +IHESLHNCPGCE+
Sbjct: 386 QSFCFECDQFIHESLHNCPGCEN 408
>gi|330804328|ref|XP_003290148.1| TFIIH subunit [Dictyostelium purpureum]
gi|325079746|gb|EGC33332.1| TFIIH subunit [Dictyostelium purpureum]
Length = 423
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/382 (43%), Positives = 243/382 (63%), Gaps = 16/382 (4%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE+ ++SW ++EDE G ++ + R R +S + R+++G+ R+L
Sbjct: 43 WEKEL--EKSWLDIREDEHGL-----RVSVEKERSNRNRRLKSTNIDIQRVRRGMQRHLC 95
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+DLS+ A D +PSR V+ + E F++EFFDQNP+SQ+ ++ K+ A +++L G
Sbjct: 96 LVLDLSKTLANQDLKPSRYQVLIQNTEQFIKEFFDQNPISQLSIIITKNSKAEKISELSG 155
Query: 150 SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIME 209
+P+ HI+A+ + G+ SIQN+LD+ L +P YG REVL L+S+L+TCDP D+ +
Sbjct: 156 NPQRHIQAMKDAIAMEGEPSIQNSLDVAISSLCYVPKYGSREVLFLFSSLTTCDPTDLAK 215
Query: 210 TIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAE 269
TIQ K+ IR S I L+AE++IC+H+ ++T GT V L+E H E + PPP I +
Sbjct: 216 TIQTLKQENIRVSFIHLAAELYICRHIAEQTNGTSKVILNEEHFLENLYSKCQPPPTIGK 275
Query: 270 FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVS 329
A+L++MGFPQ+ S C CH+++K GY CPRC + CELPT+C+IC L LVS
Sbjct: 276 VE-AALVEMGFPQQITSSVPSTCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVS 333
Query: 330 SPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCK 389
SPHLARSYHHLFPI F+E LN + TC+ C S + + L +CP+C
Sbjct: 334 SPHLARSYHHLFPIPLFEEVNWKELN-----TNVTCYSCLTS--SETSILSLFFSCPRCD 386
Query: 390 KHFCLECDIYIHESLHNCPGCE 411
+ FCLECD+YIHE+LHNCPGCE
Sbjct: 387 QVFCLECDMYIHEALHNCPGCE 408
>gi|260815126|ref|XP_002602325.1| hypothetical protein BRAFLDRAFT_282199 [Branchiostoma floridae]
gi|229287633|gb|EEN58337.1| hypothetical protein BRAFLDRAFT_282199 [Branchiostoma floridae]
Length = 396
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 176/396 (44%), Positives = 257/396 (64%), Gaps = 28/396 (7%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WE LQED +G L+ + I+ A+ RRRL+ R + V + G++R+L+
Sbjct: 12 WEGDY--EKTWEVLQEDAAGSLQASVDDIIHRAK-RRRLQDRQVNV-----RLGMMRHLF 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D+S++ + D +P+R++V K +E F+ E+FDQNP+SQ+G++T K+ A LT+LGG
Sbjct: 64 VVVDMSQSMEDQDLKPTRILVTLKLLENFIEEYFDQNPISQLGVITTKNKRAEKLTELGG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ H+ L + C G+ SI N+LDL L +P++ REVLI+ +L+TCDPGDI
Sbjct: 124 NPKRHVTQLRTLSSASCVGEPSIMNSLDLAAQTLKHMPTHTSREVLIIMGSLTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
T++ K+ IRCSVIGL+AE+ +CK LC T GTY + L+++H K+L+LEH PPPA
Sbjct: 184 NITMKMVKDLNIRCSVIGLAAEVQVCKKLCNMTNGTYGIILEDTHFKDLLLEHCTPPPAT 243
Query: 268 AEFAIASLIKMGFPQRA---GEGSI--SICSCHKEVK----IGVGYTCPRCKARVCELPT 318
+SLIKMGFPQ S+ S+C CH++ + GY CP+C A+ CELP
Sbjct: 244 VN-TDSSLIKMGFPQHTISQDHDSVKPSMCMCHQDTEAQSFTPSGYFCPQCHAKYCELPV 302
Query: 319 ECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNK 378
EC+ICGL LVS+PHLARSYHH FP+ F E L+ +SR C GCQ L
Sbjct: 303 ECKICGLTLVSAPHLARSYHHFFPLENFREIPLEELDA--ELSR-FCTGCQVQL-----N 354
Query: 379 AGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
+ C +C + FC++CD++IHE+LH+CPGC + R
Sbjct: 355 GPVVYCCTRCSRPFCIDCDLFIHETLHSCPGCINKR 390
>gi|405976292|gb|EKC40804.1| General transcription factor IIH subunit 2 [Crassostrea gigas]
Length = 399
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 251/399 (62%), Gaps = 30/399 (7%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WEA+QEDE G L+ + I A+ R+ L ++ G++R+L+
Sbjct: 11 WETEY--ERTWEAIQEDEKGSLQASVDDIISKAKKRKLLE------KIKNVRLGMMRHLF 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
++ID+S A ++ D +P+R++ K +E FV E+FDQNP+SQ+G++ K+ A +++LGG
Sbjct: 63 LIIDMSEAMSDQDLKPTRLLSTLKLLEYFVEEYFDQNPISQLGIIITKNKRAEKVSELGG 122
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI L + C G+ S+QN+L+L H L +P + REVL++ +L+TCDP +I
Sbjct: 123 NPRRHITTLQSLADKVCHGEPSLQNSLELAHQTLRHMPGHASREVLVVMGSLTTCDPDNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ TI ++ +RCSVIGL+AE+ +CK LC+ET G+YSV LDE H K+L+ +H PPPA
Sbjct: 183 ISTISMLRDGNVRCSVIGLAAEVCVCKKLCKETHGSYSVILDECHFKDLLTQHVTPPPAT 242
Query: 268 AEFAIASLIKMGFPQRA----GEGSISICSCHKEVK-----IGVGYTCPRCKARVCELPT 318
A +SLI+MGFP E S+C CH + K GY CP+CK++ CELP
Sbjct: 243 ASTE-SSLIRMGFPHHQLSADKEERPSMCMCHLDSKNSQGFSSTGYFCPQCKSKYCELPI 301
Query: 319 ECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNK 378
EC+ CGL LVS+PHLARSYHHLFP+ F E +++ S CF CQ ++
Sbjct: 302 ECKACGLTLVSAPHLARSYHHLFPLDQFREIPTAQVG-----SNVLCFSCQTAVQELN-- 354
Query: 379 AGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
C C++ +CL+CD++IHE+LH+CPGC S RQ+
Sbjct: 355 ---VYICDNCERIYCLDCDLFIHETLHSCPGCASSRQTQ 390
>gi|384487455|gb|EIE79635.1| hypothetical protein RO3G_04340 [Rhizopus delemar RA 99-880]
Length = 395
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 178/390 (45%), Positives = 248/390 (63%), Gaps = 25/390 (6%)
Query: 18 DEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVAT 77
+ +++ N G AWE Y RSW+ LQED G L + + + RR L+ T
Sbjct: 20 EHQDDTNTGGYAWEEEYK--RSWDVLQEDAEGNLSSVVSQLQQQRKRRRLLKD------T 71
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
IQ+G+IR+++I+IDLS A E D RPSR+ + + FV EFFDQNP+SQ+G++ +
Sbjct: 72 DVIQRGIIRHVFIIIDLSEAMNEKDLRPSRIELTLTYAQQFVVEFFDQNPISQLGIIITR 131
Query: 138 DGVANCLTDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
DG+A LT+L G+P HIKAL K SG+ S+QNAL L + +PS+G +EVL++
Sbjct: 132 DGIAEKLTELSGNPTDHIKALKSKKNTETSGEPSLQNALQLARASMLGVPSHGSKEVLLI 191
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
+ +L+TCDP DI +TI ++ +R +V+GL+AE+ IC+ L TY V L+E+H K+
Sbjct: 192 FGSLTTCDPSDIHDTIDLLRKELVRVNVVGLAAEVQICRAL-----RTYGVVLNEAHFKD 246
Query: 256 LILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCE 315
L+ E PPP + ++LIKMGFP+R E + + C CH ++ +G GY CPRCK++VCE
Sbjct: 247 LLFEVVPPPAVMQNKNTSNLIKMGFPKRLVEDNATFCVCHSKLTMG-GYICPRCKSKVCE 305
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNIS--RSTCFGCQQSLL 373
LP++C ICGL LVSSPHLARSYHHLFP+ FDE +NIS + CF C L
Sbjct: 306 LPSDCDICGLTLVSSPHLARSYHHLFPVDNFDEVK-------NNISGYATHCFSCLSQLD 358
Query: 374 ASGNKAGLCVACPKCKKHFCLECDIYIHES 403
S G +CPKCK+ FC ECDI++HES
Sbjct: 359 KSEVVGGNRFSCPKCKQEFCAECDIFVHES 388
>gi|307198378|gb|EFN79320.1| General transcription factor IIH subunit 2 [Harpegnathos saltator]
Length = 400
Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 172/396 (43%), Positives = 248/396 (62%), Gaps = 32/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L P I A+ +R+L + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEPSVADIILSAKRKRQLERKQ----GARL--GMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I++D S + + D +P+R + K +E F+ EFF QNP+SQ+G++T ++ A ++DL G
Sbjct: 64 IILDASESMSNQDLKPTRFLCSLKLLENFIEEFFYQNPISQLGVITTRNKRAEKISDLAG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + HIK L + + +G+ S+QN+L+L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKELQSLQQTMVTGEPSLQNSLELALKSLRLLPSHASKEILIIIGALTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETIQ K IRCSVIGL+AE++ICK + TGG + VALD+ H KE + H PPPA
Sbjct: 184 NETIQNMKSDGIRCSVIGLAAELYICKRMANATGGEHGVALDDKHYKEQLNSHIDPPPAA 243
Query: 268 AEFAIASLIKMGFPQRAGEGSI-----SICSCHKEVK------IGVGYTCPRCKARVCEL 316
A+L+KMGFP A ++ ++C CH E + GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALHSTVTDTPMTVCMCHAESSDELFKLMSTGYLCPQCLSKHCEL 302
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+A F E + N + S+CFGCQ+
Sbjct: 303 PVECRSCGLTLVSAPHLARSYHYLFPVATFTEI------EFEN-NHSSCFGCQKVFTQKD 355
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
K + C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 356 KKIYI---CEKCDQPFCLDCEIFIHESLHTCPGCAT 388
>gi|348680619|gb|EGZ20435.1| hypothetical protein PHYSODRAFT_345458 [Phytophthora sojae]
Length = 387
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 248/408 (60%), Gaps = 39/408 (9%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
EEE G AWE A +RSW+ ++ED+SG L+ ID + +++ R R L +A
Sbjct: 2 EEEASTG--YAWEG--ALERSWDVIEEDDSGNLK-IDQAV------KKQQRQRRLEIAR- 49
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
++KGLIRY Y+V+DLSR A D++P R+ + ++ FV+++FDQNP+SQ+G++ +K
Sbjct: 50 NVRKGLIRYTYVVMDLSRGMATKDWKPHRLACASDVLQQFVKDYFDQNPISQLGVIGIKG 109
Query: 139 GVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSA 198
A L+DL G+P +H++ + L + S+QNAL++ L +P+YG RE++++Y
Sbjct: 110 MTAEKLSDLSGNPNTHMERIAAALAVDKEPSLQNALEIAKSSLKTVPAYGSREIVVVYGN 169
Query: 199 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL 258
L T DPGDI +T+ K IR S IG+ AEM + + + T GTY VA+D H K L+
Sbjct: 170 LVTADPGDIFQTLASLKRENIRVSFIGIGAEMHLLRRIADGTDGTYHVAVDAEHMKRLMT 229
Query: 259 EHAPPPPAIAEFA--IASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCEL 316
P P +A A A+L++MGFPQR G++S+C+CH+ VGY CPRCK++ C+L
Sbjct: 230 AFTFPSPTVATAASRFATLVEMGFPQRR-SGALSLCTCHQAFTT-VGYLCPRCKSKSCDL 287
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDE--------------ATPSRLNDLHNISR 362
PT C++C L LVSSPHLARSYHHLFP+A F + TPS + +
Sbjct: 288 PTTCQVCNLPLVSSPHLARSYHHLFPVAKFTQHLLRSGVTGEKGAKVTPS-------LVQ 340
Query: 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
CFGC L G G C C+ FC ECD+Y+H+SLHNCPGC
Sbjct: 341 KKCFGCLLPLGLDGE--GTAYECTTCQNVFCSECDMYVHDSLHNCPGC 386
>gi|332373040|gb|AEE61661.1| unknown [Dendroctonus ponderosae]
Length = 395
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 175/409 (42%), Positives = 257/409 (62%), Gaps = 36/409 (8%)
Query: 15 EEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+EDD +E WE Y +++WEA++ED+ GFL I A+ RR+ + + T
Sbjct: 2 DEDDPKEY------RWETGY--EKTWEAIKEDDDGFLEASVAVIILRAKRRRQAQKKGNT 53
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
+ G++R+L++++D S + + D +P+RM+ + +E F+ EFFDQNP+SQ+G++
Sbjct: 54 ------KLGMMRHLFLILDCSESMSSQDLKPTRMLCSLRILEGFIEEFFDQNPISQMGII 107
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
+++ A + +LGG+ HIK L M K G+ S+QN L+ L +P++ REV
Sbjct: 108 LMQNKRAEKVCELGGNFRKHIKYLRSMSKTSLLGEPSLQNGLEDAFSSLKLVPTHASREV 167
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
L++ +L+TCDP DI TIQK K+ IRCS+IGL+AE+ IC+ L ET GTY++ LD+SH
Sbjct: 168 LVIMGSLTTCDPTDINTTIQKFKQEGIRCSIIGLAAEVHICRTLANETKGTYNIILDDSH 227
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFP-QRAGEGS---ISICSCH----KEVKIGV-G 303
K+L+ + PPPA ASLIKMGFP Q EG+ ++IC CH +E K+ G
Sbjct: 228 YKDLLYQQVEPPPAAVALE-ASLIKMGFPHQMNTEGTDEPLTICMCHVDSTEEGKLTTGG 286
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C ++ CELP ECR CGL LVS+PHLARSYHHLFP A F+E + +
Sbjct: 287 YYCPQCLSKYCELPVECRACGLTLVSAPHLARSYHHLFPPANFEEMQFDK-------QVT 339
Query: 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
TC+ CQ++ G+K CP CK+ FC++CDI+IH++LH CPGC +
Sbjct: 340 TCYACQKT-FNDGDKQ--VYQCPTCKRMFCIDCDIFIHDTLHTCPGCAT 385
>gi|307169945|gb|EFN62454.1| General transcription factor IIH subunit 2 [Camponotus floridanus]
Length = 401
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 252/407 (61%), Gaps = 36/407 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I++A+ +R+L + AR+ G++R+LY
Sbjct: 13 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQ----GARL--GMMRHLY 64
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I++D S + + D +P+R + K +E F+ EFF QNP+SQ+G++ ++ A ++DL G
Sbjct: 65 IILDASESMSNQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKISDLAG 124
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + HIK L + + +G+ S+QN+L+L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 125 NSKKHIKELRALQQTIVTGEPSLQNSLELATKSLKLLPSHASKEILIIIGALTTCDPGDI 184
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETI+ K IRCSVIGL+AE++ICK + TGG + VALD+ H KE + H PPPA
Sbjct: 185 NETIRNMKLDSIRCSVIGLAAELYICKRMANITGGEHGVALDDKHYKEQLNAHIDPPPAA 244
Query: 268 AEFAIASLIKMGFPQR-----AGEGSISICSCHKE-----VKI-GVGYTCPRCKARVCEL 316
A+L+KMGFP A + S+++C CH E VK+ GY CP+C ++ CEL
Sbjct: 245 TRLD-AALVKMGFPHHALHSSASDTSMTVCMCHAENSDESVKLMSTGYLCPQCFSKHCEL 303
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+ PF E T + S CFGCQ++
Sbjct: 304 PVECRACGLTLVSAPHLARSYHYLFPVEPFREVT-------FEGNHSFCFGCQKTFAQKD 356
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANE 423
K C KC + FCL+C+I+IH+ LH CPGC +NP N+
Sbjct: 357 KKV---YTCEKCNQTFCLDCEIFIHDILHTCPGC----ATNPATYNK 396
>gi|332017887|gb|EGI58547.1| General transcription factor IIH subunit 2 [Acromyrmex echinatior]
Length = 598
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 249/394 (63%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I++A+ +R+L + AR+ G++R+LY
Sbjct: 208 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQ----GARL--GMMRHLY 259
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I++D S + + D +P+R + K +E F+ EFF QNP+SQ+G++ ++ A ++DL G
Sbjct: 260 IILDASESMSNQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKISDLAG 319
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + HIK L + + G+ S+QN+L+L LL +PS+ +E+L++ AL+TCDPGDI
Sbjct: 320 NSKKHIKELQILQQTVVGGEPSLQNSLELATKLLKLLPSHASKEILVIIGALTTCDPGDI 379
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETI+ K IRCSVIGL+AE++ICK + TGG +SVALD+ H KE + H PPPA
Sbjct: 380 NETIRNMKLDSIRCSVIGLAAELYICKRMANITGGEHSVALDDKHYKEQLNAHIDPPPAA 439
Query: 268 AEFAIASLIKMGFPQR-----AGEGSISICSCH-----KEVK-IGVGYTCPRCKARVCEL 316
A+L+KMGFP A + SI++C CH + VK + GY CP+C ++ CEL
Sbjct: 440 TRLD-AALVKMGFPHHALHSNAPDTSITVCMCHAHNSDETVKFMTTGYLCPQCISKHCEL 498
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+ PF E P + + CFGCQ++
Sbjct: 499 PVECRACGLTLVSAPHLARSYHYLFPVDPFKEIAP-------DSDYTICFGCQKAFAQKD 551
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K AC KC + FCL+C+I+IHE LH CPGC
Sbjct: 552 KKV---YACGKCNQMFCLDCEIFIHEILHTCPGC 582
>gi|443732857|gb|ELU17421.1| hypothetical protein CAPTEDRAFT_178402 [Capitella teleta]
Length = 390
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 251/394 (63%), Gaps = 23/394 (5%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE Y +R+WEAL+ED+ G L+ + I+ A+ R + ++ G++R+L
Sbjct: 8 TWETEY--ERTWEALKEDDDGSLQAAVDDVIHRAK------RRRALLRDPNVRLGMMRHL 59
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+IV+DLS + + D RP+R+ K +E FV EFFDQNP+SQ+G++T + A+ LT+LG
Sbjct: 60 FIVVDLSTSMEDQDLRPNRLFASLKLLEKFVEEFFDQNPISQLGILTTSNKRADKLTELG 119
Query: 149 GSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ HI+AL G + C G+ S+QNALDL L +P + REVLI++ +L+TCDPG
Sbjct: 120 GNPKRHIQALRGLKERACIGEPSLQNALDLAAQTLKHMPGHSSREVLIVFGSLTTCDPGS 179
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I++TIQ K + ++ S+IGL+A++ IC+ +C +T G Y V +DE H KEL+ + PP A
Sbjct: 180 IIDTIQSMKANNVQVSIIGLAADVRICRKICHDTQGQYHVIVDEPHFKELLNQQVTPPNA 239
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV-----GYTCPRCKARVCELPTECR 321
+ +SLI+MGFP+ S+C+CH E GY CP+C+++ CELP ECR
Sbjct: 240 TSSTE-SSLIRMGFPRHEQGQQPSMCNCHLESSSSEGFSTGGYFCPQCRSKYCELPVECR 298
Query: 322 ICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGL 381
CGL LVS+PHLARSYHHLF + PF+E + + H R C+ CQ L +
Sbjct: 299 ACGLTLVSAPHLARSYHHLFLLEPFNEVR-TEVAIFHKEKR-ICYSCQSQL-----NDPM 351
Query: 382 CVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
C KC++ FC++CD+++HE+LH+CPGC S R+
Sbjct: 352 SYQCSKCRQVFCVDCDLFVHETLHSCPGCSSSRK 385
>gi|308805072|ref|XP_003079848.1| basic transcription factor 2, 44kD subunit-related (ISS)
[Ostreococcus tauri]
gi|116058305|emb|CAL53494.1| basic transcription factor 2, 44kD subunit-related (ISS)
[Ostreococcus tauri]
Length = 414
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/406 (45%), Positives = 247/406 (60%), Gaps = 19/406 (4%)
Query: 11 GEAEEEDDE--EENLNGGLEAWERSYADDRSWEALQEDE-SGFLRPIDNSAIYHAQYRRR 67
G +E + DE E L AWE+ Y +R+WE L+ED +G LR ++ A+ + R R
Sbjct: 9 GGSESDSDEIDAERAQASLRAWEKKYQSERAWEDLEEDPLTGRLR-VNARAV---ELRAR 64
Query: 68 LRGRSLTVATAR--IQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQ 125
R + A R KG++R+ Y+V+DLSRAA E DFRP+R+ VV AFVREFF+Q
Sbjct: 65 ERRAKMASAALRGGAAKGMMRFAYVVVDLSRAANEEDFRPNRLSVVGHCAAAFVREFFNQ 124
Query: 126 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIP 185
NPLSQ+G++ ++GVA LT+L GSPE+H AL L SGD S+QN L+ L IP
Sbjct: 125 NPLSQLGIIVARNGVAERLTELSGSPEAHCAALRNALDASGDFSLQNTLNAARTSLKSIP 184
Query: 186 SYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYS 245
SYG REVL + S+L+TCDPG++ IQ K +K+R SV+ ++AE+ + + L +ETGGTY
Sbjct: 185 SYGSREVLYIMSSLATCDPGNVWTEIQATKAAKVRVSVVAVAAELHVARRLSEETGGTYG 244
Query: 246 VALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYT 305
V+++ H +LI+ HAPPPP + + L++MGFPQ+ ++ V Y
Sbjct: 245 VSMNADHLDDLIMAHAPPPPLAEDATKSCLVQMGFPQKKHVSKDALI-----VGTRGDYV 299
Query: 306 CPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHN-ISRST 364
CPRC R+ ELP++C +C L LVSSPHLARSYHHLFP+ F E ++ + I
Sbjct: 300 CPRCSGRIDELPSQCTVCRLTLVSSPHLARSYHHLFPVPAFKEYASRNVSAKESGIVALE 359
Query: 365 CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C C LAS A L C C FC CDI+IHE LHNCP C
Sbjct: 360 CSAC----LASITDASLASECEHCSNVFCFACDIFIHERLHNCPHC 401
>gi|328874281|gb|EGG22647.1| TFIIH subunit [Dictyostelium fasciculatum]
Length = 457
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/384 (43%), Positives = 233/384 (60%), Gaps = 22/384 (5%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE + RSWE ++EDE G LRP Q R R R R+++G+ R++
Sbjct: 46 WEEKFV--RSWETIEEDEKG-LRP-------SLQEDRDTRTRRQLKDDQRVRRGMQRHVC 95
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+VIDLS++ D +P+R V E F++EFFDQNP+SQ+ L+ K+ A ++DL
Sbjct: 96 LVIDLSKSLEIHDLKPNRHQAVLIAAENFIKEFFDQNPISQLSLIITKNSKAEKISDLSS 155
Query: 150 SPESHIKAL-MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
+P HI+ L M GD SIQN+LD+ L+ +P YG REV+ +YS+L+TCDPGD+
Sbjct: 156 NPNRHIQLLKMVSSTIEGDPSIQNSLDVSIATLSYVPKYGSREVIFIYSSLTTCDPGDLS 215
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIA 268
+TI K IR S + L+AE+++C+H+ T GT V E H E ++ H PPP I
Sbjct: 216 KTITTLKNENIRVSFVHLAAELYVCRHISDATNGTMKVIETEHHLNEALILHCQPPPTIG 275
Query: 269 EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
+ A+L++MGFPQ+ + +C CH++ K VGYTCPRC+++ CELPT+C+ICGL LV
Sbjct: 276 KVE-AALVEMGFPQQHTSQTPMMCVCHEQFKY-VGYTCPRCQSKFCELPTDCQICGLSLV 333
Query: 329 SSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKC 388
SSPHLARSYHHLF + F E P + C+GC L L CP+C
Sbjct: 334 SSPHLARSYHHLFQVPIFREVNPKSIQ-----PNLKCYGC----LLPIKPNYLNYGCPRC 384
Query: 389 KKHFCLECDIYIHESLHNCPGCES 412
KK FC +CD +HES+HNCPGCE+
Sbjct: 385 KKIFCFDCDQVVHESIHNCPGCEN 408
>gi|145348017|ref|XP_001418454.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578683|gb|ABO96747.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 407
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/392 (44%), Positives = 243/392 (61%), Gaps = 15/392 (3%)
Query: 26 GLEAWERSYADDRSWEALQEDE-SGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
L AWE+ Y +R+WE L+ED +G LR + A+ R R + +A KG+
Sbjct: 30 ALRAWEKKYQSERAWEDLEEDPVTGRLRVTSEAQT--AKARERRAKMAALATSAGAAKGM 87
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR+ Y+V+DLSRAA E DFRP+R+ VV + +F+RE+F+QNPLSQ+G++ ++GVA L
Sbjct: 88 IRFTYVVVDLSRAANEEDFRPNRLSVVGQCATSFIREYFNQNPLSQLGIIVARNGVAERL 147
Query: 145 TDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204
T+L GSPE+H AL L SGD S+QN L++ L IPSYG REVL + S+LSTCDP
Sbjct: 148 TELSGSPEAHAAALRNALDASGDFSLQNTLNVARTSLKSIPSYGSREVLYIVSSLSTCDP 207
Query: 205 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP 264
G++ I K +K+R SV+ ++AE+ + + L +ETGGTY V+L+ H +LI+ HAPPP
Sbjct: 208 GNVWTEIAATKAAKVRVSVVAVAAELHVSRRLTEETGGTYGVSLNADHLDDLIMAHAPPP 267
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICG 324
P + +SL++MGFPQ+ ++ V G Y CPRC R+ ELP++C +C
Sbjct: 268 PLPEDATKSSLVQMGFPQKKHLSKDALV-----VGTGGEYVCPRCSGRIDELPSQCAVCR 322
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
L LVSSPHLARSYHHLFP+APF E T + + C +L+ + A
Sbjct: 323 LTLVSSPHLARSYHHLFPVAPFKEYTRDEASAKEVLECKACL----ALIKQTDPAS---K 375
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCESLRQS 416
C +C FC CD YIHE LHNCP C R++
Sbjct: 376 CEQCSNVFCFACDCYIHEKLHNCPHCTCEREN 407
>gi|449670653|ref|XP_002167169.2| PREDICTED: general transcription factor IIH subunit 2-like [Hydra
magnipapillata]
Length = 384
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/394 (43%), Positives = 245/394 (62%), Gaps = 30/394 (7%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
W Y +++WEA+QED+ G L+ + ++ A+ +R L V ++ G++R+LY
Sbjct: 12 WLNEY--EKTWEAIQEDDDGLLQSSIDEIVHQAKRKR------LLVRKGNVRLGMMRHLY 63
Query: 90 IVIDLSRAAAEMDF-RPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
I++D+S++ E D RPSR+ + K +E F+ E+FDQNP+SQ ++ A +TDL
Sbjct: 64 IILDMSKSMKESDLLRPSRLACLTKLLENFIVEYFDQNPISQ-----TRNKRAEKITDLS 118
Query: 149 GSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P HI AL K G G+ S+QN+LD+ L +P + RE+LI++ +L+TCDPGD
Sbjct: 119 GNPNIHIAALQNFVKSGPEGEPSLQNSLDMALQFLGHLPKHASREILIVFGSLTTCDPGD 178
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I TI K IRCSV+GLSAE+ +CK + ET G Y+V LDE H +L+LEH PP A
Sbjct: 179 IFTTINNLKNENIRCSVLGLSAEIKLCKTISSETNGIYNVILDEKHCNDLLLEHIRPPAA 238
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIG-----VGYTCPRCKARVCELPTECR 321
ASL++MGFPQ ++C CH E+K GY CP+CK + CELP EC+
Sbjct: 239 KLNVE-ASLVRMGFPQHISNTYPALCLCHIELKNMQGFNCTGYFCPQCKNKYCELPVECK 297
Query: 322 ICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGL 381
+CGL LVS+PHLARSY HLFP+ PF+E R+ N S C GCQ++ + + +
Sbjct: 298 VCGLTLVSAPHLARSYQHLFPLPPFEEV--RRIETAAN-KNSICQGCQRNCIDA-----I 349
Query: 382 CVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
C +CK+ FC +CD++IHE+LH CPGC S +Q
Sbjct: 350 VYICKECKEMFCNDCDMFIHETLHTCPGCTSKQQ 383
>gi|320166414|gb|EFW43313.1| general transcription factor IIH [Capsaspora owczarzaki ATCC 30864]
Length = 427
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 173/420 (41%), Positives = 259/420 (61%), Gaps = 29/420 (6%)
Query: 18 DEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVAT 77
DE++++N WE+ Y +R+W+ LQED G LR + R + R
Sbjct: 14 DEDDDMNNKGYVWEQQY--ERTWDVLQEDAQGSLRA-------SVEEHERAKRRRFKTQV 64
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
+++G++R+L I++D+S + D +P+R+ + +E FV EFFDQNP+SQ+ + +
Sbjct: 65 QGVRRGMMRHLTIILDMSSRMDDPDLKPTRLEHSIRLLEQFVPEFFDQNPISQLNFIISR 124
Query: 138 DGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYS 197
D A +++LGG+P H+++L K +G+ S+QN+L+L L +PS+ +EVLI+
Sbjct: 125 DAKAERISELGGNPAKHLESLRKKASTAGEISLQNSLELARESLRLMPSHTSKEVLIIMG 184
Query: 198 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELI 257
L++CDPGDI +TI + I CSVIGLSAE+ ICK+L ++T G ++V +DESH ++++
Sbjct: 185 GLASCDPGDIFQTISLLELDNIHCSVIGLSAEVRICKYLAEKTKGVHNVIIDESHFRDML 244
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+H PPPA + A LI+MGFP++ + ++C+CHK + G GY CP+CKA+ CELP
Sbjct: 245 FQHITPPPASSRTE-ALLIRMGFPRQNLSKAATLCACHKLFRAG-GYICPQCKAKCCELP 302
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEA----TPSRLNDLHN--ISRST------- 364
T C +CGL LVSSPHLARSYHHLFP+APF E P+ N L ++ ST
Sbjct: 303 TTCAVCGLTLVSSPHLARSYHHLFPLAPFREVPLAHPPADANGLLAGLVANSTTLALHPS 362
Query: 365 CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANEG 424
C GC + A+ A CP C +CL+CDI+IH++LH CP C +L + VAN G
Sbjct: 363 CRGCSKP-TATMRSA---FQCPTCCHVYCLDCDIFIHDTLHTCPSCVALLDGS-AVANGG 417
>gi|390343479|ref|XP_794347.2| PREDICTED: general transcription factor IIH subunit 2-like
[Strongylocentrotus purpuratus]
Length = 409
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 250/402 (62%), Gaps = 30/402 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE Y +R+WEALQEDE G L+ + I A+ RRRL R + ++ G++R+L
Sbjct: 11 TWEGDY--ERTWEALQEDEEGSLQATVDDIIQRAK-RRRLEDRP-----SNVRLGMMRHL 62
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+I++D SR+ + D +P+R+ K +E F+ E+FDQNP+SQ+G++T + A LT+LG
Sbjct: 63 FILLDCSRSMEDQDLKPNRLACCTKLLEHFIEEYFDQNPISQVGIITSSNMRAEKLTELG 122
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ HI AL C + S+QNAL+L L +P + RE+L++ +L+TCDPG+
Sbjct: 123 GNPQRHITALEKCNDKPCVKEPSLQNALELAAATLRHMPGHASREILVIMGSLTTCDPGN 182
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I +TIQ K+ IRC VIGL+A++ +C+ L T GTY V LDE+H KEL++EH PPPA
Sbjct: 183 IHDTIQAMKDHSIRCCVIGLAADVRVCRKLATVTHGTYGVILDETHFKELLMEHTIPPPA 242
Query: 267 IAEFAIASLIKMGFPQ------RAGEGSISICSCHKEVK----IGV-GYTCPRCKARVCE 315
S I+MGFPQ ++ + S+C CH + K G GY CP+C+++ CE
Sbjct: 243 RVNTE-PSPIRMGFPQHVIHTDKSKVSAPSMCMCHLDGKNSEGFGTGGYFCPQCQSKYCE 301
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP ECR+CGL LVS+PHLARS+HHLFP+ F+E + D + C GCQ +
Sbjct: 302 LPVECRVCGLTLVSAPHLARSFHHLFPLDRFEEF---KREDHDHPDSLFCQGCQSHI--- 355
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
+ CPKC FCL+C+++I ESLH+CPGC S R S
Sbjct: 356 --RDQTAYRCPKCSNVFCLDCELFIQESLHSCPGCASTRPSQ 395
>gi|298708881|emb|CBJ30838.1| General transcription factor II H, polypeptide 2 [Ectocarpus
siliculosus]
Length = 412
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 179/415 (43%), Positives = 255/415 (61%), Gaps = 44/415 (10%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
G AWE+ + +R+WE ++EDE G ++ + + + RRR+ G S I++G+
Sbjct: 12 GAGYAWEKGF--ERTWEGVEEDEHGNIKTREEGQRRNRRVRRRVGGES-------IKRGM 62
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IRYLY+ IDLS+ A+ D RPSR+ V + V+ FV +FDQNPLSQ+G++ ++G A +
Sbjct: 63 IRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKI 122
Query: 145 TDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204
T+L G+P++H++AL G++S+QN L++ L +P YG+REV+++YS+LSTCDP
Sbjct: 123 TELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDP 182
Query: 205 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP 264
GDI ETI K K K+R SV+GL AEMF+ + L +ET G YS+A DE+H +E ++ PP
Sbjct: 183 GDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPP 242
Query: 265 PAIA--EFAI-ASLIKMGFPQRAGEGSISICSCHKEVKIGV-GYTCPRCKARVCELPTEC 320
P E A+ A L++MGFP + S+ ++ V GY+CPRCK + ELP+EC
Sbjct: 243 PTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSEC 302
Query: 321 RICGLQLVSSPHLARSYHHLFPIAPFDE------------------------ATPSRLND 356
IC L LVSSPHLARSYHHLFP+ FDE A R +
Sbjct: 303 VICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPAAAAAAASAGSAGGMGSGAGAGRATE 362
Query: 357 LHNISRSTCFGCQQSLLASGNKAGLC-VACPKCKKHFCLECDIYIHESLHNCPGC 410
+ S S C GC + L +GL CP+C+ FCL+CD+Y+H+SLHNCPGC
Sbjct: 363 EESASSSYCAGCLRDL------SGLPRYRCPECRSAFCLDCDMYVHDSLHNCPGC 411
>gi|383853156|ref|XP_003702089.1| PREDICTED: general transcription factor IIH subunit 2-like
[Megachile rotundata]
Length = 400
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/396 (43%), Positives = 253/396 (63%), Gaps = 32/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I++A+ +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMNRK----IGARL--GMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I++D S + + DF+P+R + K +E FV EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 IILDASESMSIQDFKPTRFLCSLKLLEDFVEEFFYQNPISQLGVIITRNKRAEKVSELVG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + HIK + M ++ +G+ S+QN+L+L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKEIQNMQQMVPAGEPSLQNSLELALKSLRLLPSHASKEILIIIGALTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETIQ K IRCSVIGL+AE++ICK + TGG + VALD+ H KE + H PPPA
Sbjct: 184 NETIQGMKSDCIRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 268 AEFAIASLIKMGFPQRA-----GEGSISICSCHKE-----VK-IGVGYTCPRCKARVCEL 316
A+L+KMGFP A + ++++C CH E VK I GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALHSSVNDSAMAVCMCHAENSEESVKLISTGYLCPQCLSKHCEL 302
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+ PF E + + + S C+GCQ++
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVEPFTET-------VFDGTPSLCYGCQKNFSQMD 355
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
K + C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 356 KKIYI---CNKCSQAFCLDCEIFIHESLHTCPGCAT 388
>gi|350418129|ref|XP_003491749.1| PREDICTED: general transcription factor IIH subunit 2-like [Bombus
impatiens]
Length = 400
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 250/396 (63%), Gaps = 32/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I++A+ +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMEKK----VGARL--GMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D S + + D +P+R + K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSLQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELAG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + H+K + M ++ G+ S+QN+++L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHVKEVQNMQQIAPVGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETIQ K +RCSVIGL+AE++ICK + TGG + VALD+ H KE + H PPPA
Sbjct: 184 NETIQNMKTDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 268 AEFAIASLIKMGFPQR-----AGEGSISICSCHKE-----VK-IGVGYTCPRCKARVCEL 316
A+L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALHSSANDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+ F E S + STC+GCQ+ L
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVESFKEVVFSG-------TPSTCYGCQKILSQKD 355
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
K + C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 356 KKVYI---CNKCNETFCLDCEIFIHESLHTCPGCAT 388
>gi|66823583|ref|XP_645146.1| TFIIH subunit [Dictyostelium discoideum AX4]
gi|74861629|sp|Q86KZ2.2|TF2H2_DICDI RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=TFIIH basal transcription factor complex subunit 2
gi|60473387|gb|EAL71333.1| TFIIH subunit [Dictyostelium discoideum AX4]
Length = 461
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 165/391 (42%), Positives = 244/391 (62%), Gaps = 21/391 (5%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS---LTVATARIQKGLIR 86
WE + +++W + EDE G LRP + RRL+ + + R+++G+ R
Sbjct: 43 WENRF--EKTWLTIDEDEHG-LRPSNQEE--RNTRNRRLKNKDRDGILSQDQRVRRGMQR 97
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
+L +++DLS+ + D +PSR V+ + VE F++EFFDQNP+SQ+ ++ K+ A +++
Sbjct: 98 HLCLILDLSKTLSNQDLKPSRYQVLLQNVELFIKEFFDQNPISQLSIIITKNSKAEKISE 157
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
L G+ HI+A+ + G+ SIQN+L++ L +P YG REVL ++S+L+TCDP
Sbjct: 158 LSGNRLRHIQAMKDAIAMEGEPSIQNSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSS 217
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
+ +TIQ K IR S I ++AE++ICK + ++T GT V L+E H E ++ PPP
Sbjct: 218 LQKTIQSLKNESIRVSFIHMAAELYICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPT 277
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQ 326
I + A+L++MGFPQ+ S C CH+++K GY CPRC + CELPT+C+IC L
Sbjct: 278 IGKTE-AALVEMGFPQQITSTVPSPCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLS 335
Query: 327 LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKA--GLCVA 384
LVSSPHLARSYHHLF I F+E LN TC GC L+S K+ L +
Sbjct: 336 LVSSPHLARSYHHLFQIPLFNEVNWKELN-----KNVTCIGC----LSSSEKSILSLFFS 386
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
CP+C++ FCL+CD++IHESLHNCPGCE+ Q
Sbjct: 387 CPRCQEIFCLDCDLFIHESLHNCPGCENKLQ 417
>gi|340715742|ref|XP_003396368.1| PREDICTED: general transcription factor IIH subunit 2-like [Bombus
terrestris]
Length = 400
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 250/396 (63%), Gaps = 32/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I++A+ +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMEKK----VGARL--GMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D S + + D +P+R + K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSLQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELAG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + H+K + M ++ G+ S+QN+++L L +P++ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHVKEVQNMQQIAPVGEPSLQNSIELALKSLRLLPTHASKEILIIVGALTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETIQ K +RCSVIGL+AE++ICK + TGG + VALD+ H KE + H PPPA
Sbjct: 184 NETIQNMKTDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 268 AEFAIASLIKMGFPQR-----AGEGSISICSCHKE-----VK-IGVGYTCPRCKARVCEL 316
A+L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALHSSANDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+ F E S + STC+GCQ+ L
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVESFKEVVFSG-------TPSTCYGCQKILSQKD 355
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
K + C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 356 KKVYI---CNKCNETFCLDCEIFIHESLHTCPGCAT 388
>gi|42415511|ref|NP_963875.1| general transcription factor IIH subunit 2 [Danio rerio]
gi|28278887|gb|AAH45397.1| General transcription factor IIH, polypeptide 2 [Danio rerio]
Length = 392
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/395 (44%), Positives = 246/395 (62%), Gaps = 34/395 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+L+
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQAKRKRVFESH------GQVRLGMMRHLF 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
++ID SR+ + D +P+R+ K +E FV E+FDQNP+SQIG++T K+ A LTDL G
Sbjct: 63 VIIDSSRSMEDQDLKPNRLTSTLKLMEHFVEEYFDQNPISQIGIITTKNKRAEKLTDLAG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ HI AL + C G+ S+ N+L++ L +P++ REVL+++S+L+TCDPG+I
Sbjct: 123 NPKKHITALRKAVDSTCVGEPSLYNSLNMALQTLKHMPAHTSREVLVIFSSLTTCDPGNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
E I+ KIR SVIGLSAE+ +C L +ETGG+Y+V LDESH KEL+L H PPPA
Sbjct: 183 YELIKTLNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLLLHVKPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC----SCHKEVKIGVGYTCPRCKARVCE 315
+ + SLI+MGFPQ + S S+ S E+ +G GY CP+C+A+ E
Sbjct: 243 SS-SECSLIRMGFPQHVIASLSDQDAKPSFSMAHLDSSSEPELSLG-GYYCPQCRAKYTE 300
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP EC++CGL LVS+PHLARS+HHLFP+ F E TP + C CQ L
Sbjct: 301 LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQE-TPLEEYE----GERFCEACQGEL--- 352
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C CKK FC+ECDI+IH++LH CPGC
Sbjct: 353 --KDKSVFTCLACKKVFCVECDIFIHDTLHCCPGC 385
>gi|348543161|ref|XP_003459052.1| PREDICTED: general transcription factor IIH subunit 2-like
[Oreochromis niloticus]
Length = 392
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 243/402 (60%), Gaps = 33/402 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ +Y ++ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEEILYQSKRKRVIESH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+VID SR+ + D +P+R+ K +EAFV E+FDQNP+SQ+G++T K+ A LTDL G
Sbjct: 63 VVIDCSRSMEDQDLKPNRLTSTLKLMEAFVDEYFDQNPISQVGIITTKNKRAEKLTDLAG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ HI ALM + C G+ S+ N+L+L L +P + RE+LI+ S+L+TCDP +I
Sbjct: 123 NPKKHITALMKAVDTVCVGEPSLYNSLNLAIQTLKHMPGHTSREILIILSSLTTCDPANI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
E I+ K K+R SVIGLSAE+ +C L +ETGG+Y V LDESH KEL++ H PPPA
Sbjct: 183 YELIKTLKSLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHIKPPPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ G+ GY CP+C A EL
Sbjct: 242 SSSSECSLIRMGFPQHTIASVTDQDAKPSFSMSHLDSSSGPGLSLGGYFCPQCHATYTEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++CGL LVS+PHLARS+HHLFP+ F E+ L C CQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSFHHLFPLQAFIESPVENLQ-----GDRFCQACQAEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNP 418
K +CP C FC+ECD++IHESLH CP C RQ+ P
Sbjct: 353 -KDKSVFSCPSCHSVFCVECDLFIHESLHCCPCC-IYRQTAP 392
>gi|149727084|ref|XP_001504093.1| PREDICTED: general transcription factor IIH subunit 2 [Equus
caballus]
Length = 395
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 173/394 (43%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIITKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP DI
Sbjct: 123 NPRKHITSLKKAVAMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSDI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
IQ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YGLIQTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E HN R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE----HNGER-FCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYICTVCRHVFCVDCDVFVHDSLHCCPGC 385
>gi|344272627|ref|XP_003408133.1| PREDICTED: general transcription factor IIH subunit 2-like
[Loxodonta africana]
Length = 395
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L++ L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLNMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ ++ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLVKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++CGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|380019349|ref|XP_003693572.1| PREDICTED: general transcription factor IIH subunit 2-like [Apis
florea]
Length = 405
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 162/396 (40%), Positives = 249/396 (62%), Gaps = 27/396 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I++ + +R++ + AR+ G++R++Y
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNVKRKRQMEKK----VGARL--GMMRHIY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D S + + D +P+R + K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSIQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELTG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + HIK + M ++ +G+ S+QN+++L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKEVQSMQQITPAGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETI+ K +RCSVIGL+AE++ICK + TGG + VALD+ H KE + H PPPA
Sbjct: 184 NETIKNMKSDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 268 AEFAIASLIKMGFPQRA-----GEGSISICSCHKE-----VK-IGVGYTCPRCKARVCEL 316
A+L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALHSSTNDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+ PF E + + S C+GCQ+
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVEPFKEVEYRKEVTFEH--PSICYGCQKIFSQKD 360
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
K + C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 361 KKVYI---CNKCNQTFCLDCEIFIHESLHTCPGCAT 393
>gi|449271199|gb|EMC81725.1| General transcription factor IIH subunit 2 [Columba livia]
Length = 395
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 175/407 (42%), Positives = 243/407 (59%), Gaps = 36/407 (8%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE E + WE Y +R+WE L+EDESG L+ ++ A+ +R L
Sbjct: 2 DDEPERT----KRWEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------LYEH 49
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
+++ G++R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+GL+
Sbjct: 50 HGQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVDEYFDQNPISQVGLIVT 109
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A +T+L G+ + HI AL + CSG+ S+ NAL+L L +P + REVLI
Sbjct: 110 KSKRAEKMTELSGNSKKHITALKKAADMTCSGEPSLYNALNLAMQTLKHMPGHTSREVLI 169
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
++S+L+TCDP +I + I+ K KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 170 VFSSLTTCDPANIYDLIKCLKAVKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYK 229
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---G 303
EL++ H PPPA + + SLI+MGFPQ + S S+ + G+ G
Sbjct: 230 ELLMHHVSPPPASSN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAQLESSSEPGLTLGG 288
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C+A+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E
Sbjct: 289 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYQ-----GER 343
Query: 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C GCQ + K C C+ FC+ECD+++H+SLH CPGC
Sbjct: 344 YCQGCQGEM-----KDQNVYICKVCQNAFCVECDVFVHDSLHCCPGC 385
>gi|66549743|ref|XP_394997.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Apis mellifera]
Length = 405
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 249/396 (62%), Gaps = 27/396 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I++ + +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNVKRKRQMEKK----IGARL--GMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D S + + D +P+R + K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSIQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELTG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + HIK + M ++ +G+ S+QN+++L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKEVQSMQQITPAGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETI+ K +RCSVIGL+AE++ICK + TGG + VALD+ H KE + H PPPA
Sbjct: 184 NETIKNMKLDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 268 AEFAIASLIKMGFPQRA-----GEGSISICSCHKE-----VK-IGVGYTCPRCKARVCEL 316
A+L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALHSSTNDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFP+ PF E + + S C+GCQ+
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVEPFKEVEYRKEVTFEH--PSICYGCQKIFSQKD 360
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
K + C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 361 KKVYI---CNKCNQTFCLDCEIFIHESLHTCPGCAT 393
>gi|426246343|ref|XP_004016954.1| PREDICTED: general transcription factor IIH subunit 2 [Ovis aries]
Length = 395
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E HN R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE----HNGER-FCYACQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCSVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|84370085|ref|NP_001033619.1| general transcription factor IIH subunit 2 [Bos taurus]
gi|122142864|sp|Q2TBV5.1|TF2H2_BOVIN RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=General transcription factor IIH polypeptide 2
gi|83638634|gb|AAI09594.1| General transcription factor IIH, polypeptide 2, 44kDa [Bos taurus]
gi|296475883|tpg|DAA17998.1| TPA: general transcription factor IIH subunit 2 [Bos taurus]
gi|440911341|gb|ELR61023.1| General transcription factor IIH subunit 2 [Bos grunniens mutus]
Length = 395
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E HN R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE----HNGER-FCYACQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCSVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|225719554|gb|ACO15623.1| General transcription factor IIH subunit 2 [Caligus clemensi]
Length = 397
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/398 (41%), Positives = 244/398 (61%), Gaps = 32/398 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA+QED G +R I A+ +R L T +++ G++RYLY
Sbjct: 10 WETGY--EKTWEAIQEDGDGLIRFSVQDIIDKARRKR------LAEKTGKVRLGMMRYLY 61
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D S + D +P+R++ V K +E F+ E+F NP+SQ+G++ ++ + L++LGG
Sbjct: 62 VILDGSESMQLQDMKPTRLLSVMKLLEVFIEEYFYLNPISQLGIILTRNKRSEVLSELGG 121
Query: 150 SPESHIKALM---GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+P H + L + C+G+ S+QNALD L +PS+G +E+L ++ +L+TCDP D
Sbjct: 122 NPRKHTERLRKARDDIVCAGEPSLQNALDTALNYLKPMPSHGSKEILSVFGSLTTCDPSD 181
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I TI CK + +R S I L+AE+ I K L + TGG ++V LD+ H KE++ PPP+
Sbjct: 182 INATIINCKAANVRASFISLTAEVRIYKELTKVTGGDFNVILDDVHFKEILSSQLEPPPS 241
Query: 267 IAEFAIASLIKMGFPQRAGEGS------ISICSCHKE---VKIG-VGYTCPRCKARVCEL 316
+ ASLIKMGFP G+ + + +C CH E KI G+ CP+C A+ CEL
Sbjct: 242 ATQMD-ASLIKMGFPCHTGDDTSDPRSGLGLCMCHLENNPPKISHTGFLCPQCSAKYCEL 300
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC CGL LVS+PHLARSYHHLFP+ PFD+ S + S CF C + L
Sbjct: 301 PVECVSCGLTLVSAPHLARSYHHLFPLPPFDQQISS------SQSIRECFACMRGL---- 350
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
N+ ACP+C K++C++CDI+IHE+LH+CPGC S R
Sbjct: 351 NRESKVFACPQCHKNYCIDCDIFIHETLHSCPGCASTR 388
>gi|213511927|ref|NP_001135173.1| general transcription factor IIE, polypeptide 2-2 [Salmo salar]
gi|197632439|gb|ACH70943.1| general transcription factor IIE, polypeptide 2-2 [Salmo salar]
Length = 393
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 237/395 (60%), Gaps = 33/395 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATVEEILFQAKRKRVFESH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+VID SR + D +P+R+ K VE FV E+FDQNP+SQ+G++T K+ A LTDL G
Sbjct: 63 VVIDTSRTMEDQDLKPNRLTSTLKLVEYFVEEYFDQNPISQVGIITTKNKRAEKLTDLAG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ HI AL C G+ S+ N++ L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPKKHIDALKKAKDSTCGGEPSLYNSISLAMQTLKHMPGHSSREVLIIFSSLTTCDPANI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
E ++ K KIR SVIGLSAE+ +C L +ETGG+Y V LDESH +EL++ H PPPA
Sbjct: 183 YELVKTLKALKIRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFRELLMFHVKPPPAT 242
Query: 268 AEFAIASLIKMGFPQRA------GEGSISICSCHKEVKIG------VGYTCPRCKARVCE 315
+ + SLI+MGFPQ + S H + G GY CP+C+A+ E
Sbjct: 243 SS-SECSLIRMGFPQHTIASLSDQDAKPSFSQAHLDSTSGGPGLSMGGYFCPQCQAKYTE 301
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP EC++CGL LVS+PHLARS+HHLFP+ F E+ LH+ R C CQ L
Sbjct: 302 LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQESPLL----LHHRER-FCEACQGEL--- 353
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K CP C FC+ECD++IH++LH CP C
Sbjct: 354 --KDRSVFTCPSCSSVFCVECDLFIHDTLHCCPSC 386
>gi|449514090|ref|XP_004174671.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 2 [Taeniopygia guttata]
Length = 410
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 241/407 (59%), Gaps = 36/407 (8%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE E + WE Y +R+WE L+EDESG L+ ++ A+ +R L
Sbjct: 17 DDEPERT----KRWEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------LYEH 64
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
+++ G++R+LY+VID SR + D +P+R+ K +E FV E+FDQNP+SQIGL+
Sbjct: 65 HGQVRLGMMRHLYVVIDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVT 124
Query: 137 KDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A +T+L G+ + H+ AL + CSG+ S+ N+L+L L +P + REVL+
Sbjct: 125 KSKRAEKMTELSGNSKKHVTALKKAVDMNCSGEPSLYNSLNLAMQTLKHMPGHTSREVLV 184
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ S+L+TCDP +I + I+ K K+R SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 185 VLSSLTTCDPANIYDLIKCLKAVKVRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYK 244
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---G 303
EL++ H PPPA + + SLI+MGFPQ + S S+ G+ G
Sbjct: 245 ELLMHHVSPPPA-SSTSECSLIRMGFPQHTIASLSDQDAKPSFSMVQLENNSDPGLTLGG 303
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C+A+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E
Sbjct: 304 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYK-----GER 358
Query: 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C GCQ + K C C+ FC+ECD+++H+SLH CPGC
Sbjct: 359 YCHGCQGEM-----KDQNVYICKVCQNAFCVECDLFVHDSLHCCPGC 400
>gi|312384212|gb|EFR28989.1| hypothetical protein AND_02404 [Anopheles darlingi]
Length = 1093
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/418 (39%), Positives = 250/418 (59%), Gaps = 34/418 (8%)
Query: 13 AEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS 72
AEEED +E WE Y +++WEA++ED+ G + I A+ +R+ R
Sbjct: 2 AEEEDPKEYR-------WETGY--EKTWEAIKEDDDGLIEGSVTDIIQKAKRKRQAMKRG 52
Query: 73 LTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIG 132
+ + G++R+LY+++D S A + D +P+R + K +E F+ EFFDQNP+SQ+G
Sbjct: 53 FS------KLGMMRHLYVLLDCSEAMSVPDLKPTRFICSLKLLELFIEEFFDQNPISQLG 106
Query: 133 LVTVKDGVANCLTDLGGSPESHIKALMG-KLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
++ +K A +T+L G+ H+KA+ +G+ S+QN L+L L +PS+ RE
Sbjct: 107 VIAMKAKRAEKITELSGTARKHVKAVHALNTQLTGEPSLQNGLELALKTLRLVPSHASRE 166
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
VL++ +L+TCDP DI TI+ K IRCSV+ LSAE+ ICK+LC ETGGTY+ LD++
Sbjct: 167 VLVIMGSLTTCDPTDIHVTIETLKTEGIRCSVVSLSAEIRICKYLCTETGGTYAAVLDDA 226
Query: 252 HSKELILEHAPPPPA--IAEFAIASLIKMGFP----QRAGEGSISICSCHKEVK------ 299
H K+ +L+H PP A EF SLIKMGFP + E +++C CH +
Sbjct: 227 HYKDQLLQHIDPPQAGNQQEF---SLIKMGFPHGKTETGKEPPLTMCMCHIDSTDEPAKL 283
Query: 300 IGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRL-NDLH 358
GY CP+C ++ CELP EC CGL L S+PHLARS+HHLFP+ F E T ++ +
Sbjct: 284 TSGGYHCPQCYSKYCELPVECAACGLTLASAPHLARSFHHLFPVPHFKELTLEQVQQEAR 343
Query: 359 NISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQS 416
+ + C+ CQ+ L + +K C C+ FC++CDI+IHE+LH+C GC ++ S
Sbjct: 344 EVPVNYCYACQKPLTVTTDKT--VYECDACRMVFCIDCDIFIHETLHSCVGCTTIPAS 399
>gi|116812559|ref|NP_001070896.1| general transcription factor IIH subunit 2 [Rattus norvegicus]
gi|182701382|sp|A0JN27.1|TF2H2_RAT RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|116487735|gb|AAI26098.1| General transcription factor IIH, polypeptide 2 [Rattus norvegicus]
Length = 396
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 237/396 (59%), Gaps = 35/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC-----SCHKEVKIGVGYTCPRCKARVC 314
+ + SLI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYK-----GERFCYGCQGEL-- 353
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 ---KDQHVYVCTVCRNVFCVDCDVFVHDSLHCCPGC 386
>gi|395825440|ref|XP_003785941.1| PREDICTED: general transcription factor IIH subunit 2-like
[Otolemur garnettii]
Length = 395
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 239/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHIASLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH KEL+ + PPPA
Sbjct: 183 YDLIKTLKAAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHYVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNSEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++CGL LVS+PHLARSYHHLFP+ F E L + H C+GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEIP---LEEHHG--ERFCYGCQGDL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCNACQNVFCVDCDVFVHDSLHCCPGC 385
>gi|149059192|gb|EDM10199.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_b [Rattus norvegicus]
gi|149059193|gb|EDM10200.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 398
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 237/396 (59%), Gaps = 35/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC-----SCHKEVKIGVGYTCPRCKARVC 314
+ + SLI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYK-----GERFCYGCQGEL-- 353
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 ---KDQHVYVCTVCRNVFCVDCDVFVHDSLHCCPGC 386
>gi|363744781|ref|XP_003643123.1| PREDICTED: general transcription factor IIH subunit 2-like [Gallus
gallus]
Length = 395
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 171/407 (42%), Positives = 241/407 (59%), Gaps = 36/407 (8%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE E + WE Y +R+WE L+EDESG L+ + ++ A+ +R
Sbjct: 2 DDEPERT----KRWEGGY--ERTWEILKEDESGSLKATIDDILFKAKRKRIYEHH----- 50
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
+++ G++R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+GL+
Sbjct: 51 -GQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQMGLIVT 109
Query: 137 KDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A +T+L G+P+ HI AL + C G+ S+ N+L+L L +P + REVLI
Sbjct: 110 KSKRAEKMTELSGNPKKHIAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREVLI 169
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
++S+L+TCDP +I + I+ K KIR SVIGLSAE+ +C L +ETGGTY V LDE+H K
Sbjct: 170 VFSSLTTCDPANIYDLIKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDETHYK 229
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---G 303
EL++ H PPPA + + SLI+MGFPQ + S S+ + + G
Sbjct: 230 ELLMHHVSPPPA-SSTSECSLIRMGFPQHTTASLSDQDAKPSFSMAQLENNSEPCLTLDG 288
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C+A+ ELP EC+ICGL LVS+PHLARSYHHLFP+ F E
Sbjct: 289 YFCPQCRAKYSELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYQ-----GER 343
Query: 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C GCQ + K C CK FC+ECD+++H+SLH CPGC
Sbjct: 344 YCQGCQAEI-----KDQNVYICKTCKNAFCVECDVFVHDSLHCCPGC 385
>gi|58331891|ref|NP_001011081.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
(Silurana) tropicalis]
gi|54038231|gb|AAH84471.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
(Silurana) tropicalis]
gi|115530769|emb|CAL49300.1| general transcription factor IIH polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
Length = 393
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ + ++ + +R R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKSTIDEILFKDKRKRIFENR------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D SR + D +P+R+ K +E FV E+FDQNP+SQIGL+ ++ A LT+L G
Sbjct: 63 VIVDSSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTRNKRAEKLTELAG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P H+ AL + C+G+ S+ N+L+L L +P + RE+L+++S+L+TCDP +I
Sbjct: 123 NPRQHLNALKKAVDMNCNGEPSLYNSLNLALQTLKHMPGHTSREILVIFSSLTTCDPTNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K SKIR SVIGLSAE+ +C L +ETGG Y V LDESH KEL++ H PPPA
Sbjct: 183 YDIIKCLKASKIRVSVIGLSAEVRVCTVLTRETGGVYHVILDESHYKELLMHHVIPPPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 242 SSTSECSLIRMGFPQHTMGCLSDQDAKPSFSMAHLDNTSEPGLTLGGYFCPQCRAKYSEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++C L LVS+PHLARSYHHLFP+ F E + C GC L
Sbjct: 302 PVECKVCRLTLVSAPHLARSYHHLFPLDAFKEVSLEEYE-----GERYCRGCDGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K CP C+ FC+ECD++IHESLH CPGC
Sbjct: 353 -KDQQVYICPVCQCVFCIECDLFIHESLHCCPGC 385
>gi|156546970|ref|XP_001599241.1| PREDICTED: general transcription factor IIH subunit 2-like [Nasonia
vitripennis]
Length = 404
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 162/396 (40%), Positives = 243/396 (61%), Gaps = 32/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G L I+ A+ +R+L + +R+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGMLEASVADIIHKAKRKRQLDRKE----GSRL--GMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I++D S + D +P+R + K +E F+ EFF QNP+SQ+G++ ++ A +TDL G
Sbjct: 64 IILDCSESMTNQDLKPTRFLCALKLLEDFIDEFFYQNPISQLGIIITRNKRAEKITDLTG 123
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ ++ L + + +G+ S+QN+L+L L +PS+ +E+L++ +L+TCDPGDI
Sbjct: 124 NPKKPLQDLKNLQQTSFTGEPSLQNSLELAAKTLKMLPSHASKEILLIMGSLTTCDPGDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ETIQ K +RCSVIGL+AE+ ICK + TGG + V LD+ H KE + H PPPA
Sbjct: 184 GETIQSLKSDGVRCSVIGLAAELNICKIMAVNTGGEHGVVLDDKHFKEKLTAHVDPPPAA 243
Query: 268 AEFAIASLIKMGFPQRA-----GEGSISICSCHKEVK------IGVGYTCPRCKARVCEL 316
A+L+KMGFP A E S+++C CH + GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALQASTTELSMAVCMCHADKPDESSRFTNPGYLCPQCLSKHCEL 302
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P ECR CGL LVS+PHLARSYH+LFPI F E + + ++C+ CQ++ +
Sbjct: 303 PVECRGCGLTLVSAPHLARSYHYLFPIKHFKE-------EQYEGDPASCYACQKTFVELD 355
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
K C KCK+ FCL+C+I+IHESLH CPGC +
Sbjct: 356 KKV---YVCEKCKQTFCLDCEIFIHESLHTCPGCAT 388
>gi|321470853|gb|EFX81828.1| hypothetical protein DAPPUDRAFT_317251 [Daphnia pulex]
Length = 405
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 249/424 (58%), Gaps = 45/424 (10%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
D+EE N WE Y +++WEA++ED+ G L N A A+ +R+ R+ A
Sbjct: 3 DEEETNEY----RWESGY--EKTWEAIKEDDDGLLE--SNVAEIVARAKRK---RAALKA 51
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T IQ G++R+L++VID S D +P+R + V K +E FV EFFD NP+SQ+G++T
Sbjct: 52 TGAIQLGMMRHLFVVIDASECMFLQDLKPTRFLCVLKLLELFVHEFFDLNPISQLGILTT 111
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K + ++ L G+ + HI+AL M C G+ S+QN+L+ L +P++ REVL+
Sbjct: 112 KVKRSEQVSALAGNQKKHIEALQQMKDTSCEGEPSLQNSLERAMNGLKNMPAHSSREVLV 171
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
L+ +L+TCDPGDI +TI+ KE+ IR S+IGL+AE+ IC+ + + TGGTY+V LD+ H K
Sbjct: 172 LFGSLTTCDPGDIQKTIKSLKENNIRVSIIGLAAEVRICREIAKRTGGTYNVLLDDHHLK 231
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFP-----------QRAGEGSISICSCHKEVKIGV- 302
ELIL PPA+A ASL+KMGFP A + + + C CH E +
Sbjct: 232 ELILNQV-QPPAVAGSMEASLVKMGFPGGKPGSSDGASDSAADHAPAYCLCHIENETSCL 290
Query: 303 -----GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDL 357
GY CP+C +R CELP EC+ CGL LVS+PHLARSYHHLFPI PF E T
Sbjct: 291 MGNNSGYNCPQCGSRYCELPVECKQCGLTLVSAPHLARSYHHLFPIKPFIERTEVP---- 346
Query: 358 HNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
+ CF C + G C C + CL+CD++I E+LH CPGC S+
Sbjct: 347 ---EMTHCFACAKPF---GELDPNVYECENCNQIVCLDCDLFIRETLHTCPGC----ASD 396
Query: 418 PVVA 421
P+ A
Sbjct: 397 PITA 400
>gi|406604786|emb|CCH43771.1| General transcription factor IIH subunit 2 [Wickerhamomyces
ciferrii]
Length = 420
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 239/403 (59%), Gaps = 26/403 (6%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
E + NGG +WE Y RSW+ ++EDE+G + I + + H + R +
Sbjct: 34 EIQGANGGY-SWEDEY--QRSWDIVKEDEAGSIAGIVSGLLQHQKKR-------IIKNVT 83
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
Q+G+IR L +++DLS + E D RP+R + FV EFFDQNP+SQ+G++ +++
Sbjct: 84 PFQRGIIRNLILILDLSSSMLEKDLRPNRHSITITNAIQFVTEFFDQNPISQLGIIIMRN 143
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
G+ ++ +GG+P+ HI AL + KL GD S+QNAL++ GLL + S+ REVLI+Y
Sbjct: 144 GIGQLVSQVGGNPQEHIDALKSIKKLEPKGDPSLQNALEMSRGLLMHVASHCTREVLIIY 203
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESH 252
+L + DPG+I +T+ E KIR +IGLSA++ ICK +C++T +Y+V L+E H
Sbjct: 204 GSLLSLDPGNIHKTVNSLVEEKIRVKIIGLSAQVSICKEICKKTNFGDENSYNVILNEQH 263
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKAR 312
KEL ++ P P +L+KMGFP R E S S CSCH ++ G GY CP CK++
Sbjct: 264 FKELFMDAVVPLPVNKINKSFTLVKMGFPYRISEDSPSFCSCHSKLTYG-GYICPNCKSK 322
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
+C LPT C C L+ S HLARSYHHL P+ F E + N + CFGCQ L
Sbjct: 323 ICSLPTICPCCNTMLILSTHLARSYHHLLPLKNFIEVPVDK-----NYDVNLCFGCQMEL 377
Query: 373 ---LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
L + + C C FC++CD++IHE+LHNCPGCE+
Sbjct: 378 PDGLITQTSSSR-YKCVDCNNQFCIDCDVFIHETLHNCPGCEN 419
>gi|147906745|ref|NP_001085329.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
laevis]
gi|49256020|gb|AAH71091.1| MGC81060 protein [Xenopus laevis]
Length = 395
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 239/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ + ++ + +R R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATIDEILFKDKRKRIFENR------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D SR + D +P+R+ K +E FV E+FDQNP+SQIGL+ ++ A LT+L G
Sbjct: 63 VIVDSSRTMEDQDLKPNRLTCTLKLLEFFVEEYFDQNPISQIGLIVTRNKRAEKLTELAG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI A+ + CSG+ S+ N+L+L L +P + RE+L+++S+L+TCDP +I
Sbjct: 123 NPRQHINAMKKAVDMTCSGEPSLYNSLNLALQTLKHMPGHTSREILVIFSSLTTCDPTNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K SK+R SVIGLSAE+ +C L +ETGG Y V LDESH KEL++ H PPPA
Sbjct: 183 YDMIKCLKASKVRVSVIGLSAEVRVCTVLTRETGGVYHVILDESHYKELLMHHVIPPPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+CKA+ EL
Sbjct: 242 SSSSECSLIRMGFPQHTMGCLSDQDAKPSFSMAHLDNTSEPGLTLGGYFCPQCKAKYSEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++C L LVS+PHLARSYHHLFP+ F E RL + C GC L
Sbjct: 302 PVECKVCRLTLVSAPHLARSYHHLFPLDAFKEV---RLEEYDG--ERYCRGCDGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC+ECD+++HESLH CPGC
Sbjct: 353 -KDQQVYVCTVCQCVFCIECDLFVHESLHCCPGC 385
>gi|391326656|ref|XP_003737828.1| PREDICTED: general transcription factor IIH subunit 2-like
[Metaseiulus occidentalis]
Length = 390
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/411 (41%), Positives = 250/411 (60%), Gaps = 34/411 (8%)
Query: 18 DEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVAT 77
DE+E +G WE Y +R+WEA++EDESG L+ I H R++L +
Sbjct: 3 DEDEQQDG--YRWESEY--ERTWEAIREDESGNLQA-SVQEIVHKTRRQQL------LLQ 51
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
++ G++R+LY+V+DLS + D RPSR+ V ++ FV F+D+NP+SQ+ ++
Sbjct: 52 KNVRLGMMRHLYVVLDLSASMNSNDLRPSRIQCVLHLLDDFVDRFYDENPISQLAIIATC 111
Query: 138 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
+ A ++DL G+P H + L + +G+ S+QN++++ +L +P++ REV+I+
Sbjct: 112 NKRAEKISDLSGNPLKHKEGLAKIKDRLPTGEPSLQNSINMAAAVLQHMPAHSSREVVII 171
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
+L+TCDP DI ETI++ K+ +RCSVIGL+AE+++C+ L + TGG+Y + +DE H +E
Sbjct: 172 LGSLTTCDPTDINETIEEAKKLGLRCSVIGLAAEVYVCRRLTEITGGSYHIVVDEDHLRE 231
Query: 256 LILEHAPPPPAIAEFAIASLIKMGFP--QRAGEGSISICSCHKE------VKIGV-GYTC 306
L+ H PPPA+ S++KMGFP + E + ++C CH E V I G+ C
Sbjct: 232 LLANHLLPPPALNNIE-CSMVKMGFPFHKNEQEDTPALCQCHLEAAATESVHITTGGFLC 290
Query: 307 PRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCF 366
P+CK++ CELP ECRICGL LVS+PHLARSYHHLFP+ F E L TCF
Sbjct: 291 PQCKSKYCELPAECRICGLTLVSAPHLARSYHHLFPLDNFKET------HLLKGDTRTCF 344
Query: 367 GCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
CQ S+ C KCK+ FCL+CDI+IH +LH CPGC Q N
Sbjct: 345 SCQSSVEGQN-----MYTCEKCKEEFCLDCDIFIHATLHLCPGCACKPQMN 390
>gi|395814688|ref|XP_003780876.1| PREDICTED: general transcription factor IIH subunit 2-like
[Otolemur garnettii]
Length = 395
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHIASLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH KEL+ + PPPA
Sbjct: 183 YDLIKTLKAAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHYVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 LN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNSEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++CGL LVS+PHLARSYHHLFP+ F E L + H C+GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEIP---LEEHHG--ERFCYGCQGDL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++++SLH CPGC
Sbjct: 353 -KDQHVYVCNACQNVFCVDCDVFVYDSLHCCPGC 385
>gi|358059749|dbj|GAA94518.1| hypothetical protein E5Q_01170 [Mixia osmundae IAM 14324]
Length = 458
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 245/438 (55%), Gaps = 50/438 (11%)
Query: 3 NSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHA 62
N R NG A E + +WE Y RSW+ ++EDE G L+ + +
Sbjct: 40 NKRRKTANGTANGEANY---------SWEEDY--KRSWDVVREDERGSLQGAVKDILERS 88
Query: 63 QYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREF 122
+ RR +R T IQ+G+IR+LY +IDLS A + D RP+R+ + K FV E+
Sbjct: 89 KRRRIMRD------TTSIQRGIIRHLYFIIDLSEAMTDRDLRPTRLELTIKYAIEFVNEY 142
Query: 123 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSIQNALDLVHGL 180
FDQNP+SQ+ ++ KDG+A ++ L G+P H++AL K L SG+ S+QN L++
Sbjct: 143 FDQNPISQMAILVTKDGIAERISPLSGNPVDHVRALESKRKLDPSGEPSLQNVLEMARSG 202
Query: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET 240
L +PS+G REV+I++ +L+TCDPG+I T++ + ++R +++GLSAEM ICK +C+ T
Sbjct: 203 LAHLPSHGSREVVIIFGSLTTCDPGNIHTTMEALVKDRVRVNIVGLSAEMSICKEVCKRT 262
Query: 241 GGTYSVALDESHSKELILEHAPPPP----------AIAEFAIASLIKMGFPQRAGEGSIS 290
G Y V +E+H K+L+ E PPP + + A L++MGFP + +
Sbjct: 263 KGVYGVVTNEAHYKDLLFELVPPPATHRPEAGPDGSRSNNTGADLMQMGFPSLSSSTFGA 322
Query: 291 ICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT 350
+CSCH +K G+ CPRC +R+CE+PTEC IC L +VSSPHLARSY HLFP+ + E
Sbjct: 323 LCSCHSRLKT-TGFNCPRCASRLCEVPTECGICSLTVVSSPHLARSYRHLFPVKNYLEVN 381
Query: 351 PSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA------------------CPKCKKHF 392
+ + + + CF C A A CP+C HF
Sbjct: 382 NGQPGE--DSWPAECFACSLKFSTVAVSAATTGAPPTAASTASRISSTGRYECPRCHNHF 439
Query: 393 CLECDIYIHESLHNCPGC 410
C++CD++ HE L CPGC
Sbjct: 440 CIDCDLHAHEVLGVCPGC 457
>gi|31418653|gb|AAH53382.1| General transcription factor II H, polypeptide 2 [Mus musculus]
Length = 396
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 237/396 (59%), Gaps = 35/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H P PA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPLPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC-----SCHKEVKIGVGYTCPRCKARVC 314
+ + SLI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYK-----GERFCYGCQGEL-- 353
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 ---KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|73949709|ref|XP_535266.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Canis lupus familiaris]
Length = 395
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 239/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ PF E HN R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDPFQEIPLEE----HNGER-FCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|327263012|ref|XP_003216315.1| PREDICTED: general transcription factor IIH subunit 2-like [Anolis
carolinensis]
Length = 406
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKASVEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+G++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIITKGKRAEKLTELAG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI AL + C+G+ S+ NAL+L L +P + REVL+++S+L+TCDP +I
Sbjct: 123 NPRKHITALKKAVDMTCAGEPSLYNALNLATQTLKHMPGHTSREVLVIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K KIR SVIGLSAE+ +C L +ETGGTY V LDESH +EL++ H PPPA
Sbjct: 183 YDLIKSLKMLKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYRELLMHHVSPPPAT 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + +SLI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SG-SESSLIRMGFPQHTIASLTDQDAKPSFSMAHLENSSEPGLTLGGYFCPQCRAKYSEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++CGL LVS+PHLARSYHHLFP+ F E C GC + G
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYT-----GERYCQGCHGGI---G 353
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
++ C +C+ FC++CDI+ HE+LH CPGC
Sbjct: 354 DQH--VYICKECQSGFCVDCDIFAHETLHCCPGC 385
>gi|351712123|gb|EHB15042.1| General transcription factor IIH subunit 2, partial [Heterocephalus
glaber]
Length = 392
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 237/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFENH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLACTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E T C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEMTLEEYK-----GERFCYGCQGQL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C +C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAECQNVFCVDCDVFVHDSLHCCPGC 385
>gi|118344316|ref|NP_001071980.1| zinc finger protein [Ciona intestinalis]
gi|92081522|dbj|BAE93308.1| zinc finger protein [Ciona intestinalis]
Length = 395
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 240/394 (60%), Gaps = 38/394 (9%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEAL+EDE+G L+ + I A+ +RRL+ R V + G++R+LY
Sbjct: 12 WEGDY--EKTWEALKEDETGSLQASIEAEINKAK-KRRLQQRQRNV-----RLGMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+DLS+A + D +P+R V V K +E F +FFDQNP+SQ+G V+ A L+D+ G
Sbjct: 64 VVVDLSQAMCDQDLKPNRAVAVLKALEIFSEKFFDQNPISQLGFVSTCAKRAEVLSDMSG 123
Query: 150 SPESHIKALMGKLG----------CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSAL 199
S + HIK L LG C+G+ S+QN+L+L L +PS+ +E+L++ +L
Sbjct: 124 SLQKHIKVLQD-LGQKIIKTNAKHCTGEPSLQNSLELCAKSLKHMPSHTSKEILVVMGSL 182
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILE 259
+TCDPG I +TI + + IRCSVIGLSAE+ ICK+L + T GT+ + LDESH +L+ +
Sbjct: 183 TTCDPGSIHDTITQIAKQSIRCSVIGLSAEVHICKYLAKSTKGTFGIILDESHFADLLTD 242
Query: 260 HAPPPPAIAEFAIASLIKMGFPQRAG---EGSISICSCHKEVKIGVGYTCPRCKARVCEL 316
H PPP I+ +SLIKMGFP G IS+C +G GY CP+C+A+ EL
Sbjct: 243 HVPPPAEIS--PESSLIKMGFPHHVSPHESGKISLCMSRNTFTVG-GYFCPQCQAKYSEL 299
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P +C IC L LVS+PHLARSYHH FP+ F E + TC+ C + + +
Sbjct: 300 PVQCVICALTLVSAPHLARSYHHFFPLPMFKEQEVP-------VGSLTCYSCCKPITTAT 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C +C FC++C+ +IHE+LH+CPGC
Sbjct: 353 ------YVCEQCAISFCMDCNAFIHETLHSCPGC 380
>gi|409044666|gb|EKM54147.1| hypothetical protein PHACADRAFT_185111 [Phanerochaete carnosa
HHB-10118-sp]
Length = 451
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 170/405 (41%), Positives = 250/405 (61%), Gaps = 36/405 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE SY R+WE +QEDE+G L I A+ RRR R L A A +++ +IR+L
Sbjct: 58 AWEASYT--RTWETVQEDEAGSLHTAVRDLI--AKGRRR---RLLAPAEA-VRRTIIRHL 109
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+DLS + + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 110 ILVLDLSSSMMDRDMRPTRFDLMLQYAREFIAEWFDQNPLGQIGIVGMRGGIGERIGEMS 169
Query: 149 GSPESHIKALM--GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ ++++ KL G+ S+QNA+++ ++ +P+ RE+ I++ +L+TCDPG+
Sbjct: 170 GNPQDVLRSIAERHKLEPVGEPSLQNAIEMARSSMSHLPTNSSREITIIFGSLTTCDPGN 229
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP-- 264
I +T+ +C + KIR S++ L+AEM IC+ LC +TGG + VAL+E H K+L+ E PPP
Sbjct: 230 IHDTLDECVKDKIRISLVALAAEMKICRELCVKTGGQFGVALNEGHFKDLLFELIPPPAQ 289
Query: 265 --------PAIAEFAIASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVCE 315
P A A A LI MGFP R S S+C CH E+K G+ CPRC A+VC+
Sbjct: 290 RALTRANGPGAANPA-ADLIMMGFPTRLPVTSQPSLCVCHGELK-SEGFLCPRCLAKVCD 347
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL--- 372
+PT+C ICGL +VSSPHLARSYHHLFP+ P+ T L+D ++S +TC+GC
Sbjct: 348 VPTDCDICGLMIVSSPHLARSYHHLFPVKPYTPIT--NLDDATSLS-ATCYGCSVPFQEK 404
Query: 373 -------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L G CP+C+ FC ECD++IH+ LH CPGC
Sbjct: 405 VLQPNVPLVDGISPLGRYRCPECEHDFCTECDVFIHDVLHCCPGC 449
>gi|332233766|ref|XP_003266076.1| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Nomascus leucogenys]
Length = 395
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 240/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTNASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E L + HN R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI----LLEEHNGER-FCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|346716173|ref|NP_001231240.1| general transcription factor IIH subunit 2 [Sus scrofa]
Length = 395
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 240/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVIEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C+G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+AR CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRARYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E HN R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE----HNGER-FCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYICSVCQHVFCVDCDVFVHDSLHCCPGC 385
>gi|412993157|emb|CCO16690.1| predicted protein [Bathycoccus prasinos]
Length = 452
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 177/429 (41%), Positives = 249/429 (58%), Gaps = 43/429 (10%)
Query: 18 DEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRL------RGR 71
+EEEN L+A+E+ Y +R+WE L ED G LR +S RRR +
Sbjct: 27 EEEEN---ALKAYEKRYQKERTWEDLTEDAEGNLR--SSSLEKDRSQRRRFLANEKRKKI 81
Query: 72 SLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQI 131
+ +R+ KG+IRY Y+++DLS A D RP+R V+ + FVREFF+QNPLSQ+
Sbjct: 82 EKEASQSRVAKGMIRYCYVILDLSDAIHVEDMRPNRSAVLLPLMIKFVREFFNQNPLSQL 141
Query: 132 GLVTVKDGVANCLTDLGGSPESHIKALMGKL---GCSGDSSIQNALDLVHGLLNQIPSYG 188
GL+ KDG A +T+L GSPE+H+KA+ G G S+QN L+ L +P +G
Sbjct: 142 GLIACKDGKAERITELSGSPETHVKAIKKAFASDGVGGSFSLQNGLEQAMEGLRDVPPFG 201
Query: 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL 248
RE++ + S+LSTCDPG+I ++++K K+ K R +VI ++AE + K L +ET G +SV+L
Sbjct: 202 AREIIAIISSLSTCDPGNINDSVRKVKKMKARTNVICVAAETRVFKKLSEETKGKFSVSL 261
Query: 249 DESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK--IGVG--- 303
D+SH LI+E APPP + E A +L++MGFP+R + + ++ + + +G
Sbjct: 262 DQSHLTRLIMECAPPPALLLETAKPALVEMGFPRREPR-KFGLGAGDEDDRDVLTIGPRN 320
Query: 304 --YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT----------- 350
Y CPRC+AR ELP++C C L LVSSPHLARSYHHLFP+ PF E
Sbjct: 321 GEYRCPRCEARAEELPSQCGTCQLSLVSSPHLARSYHHLFPVMPFVEVKVDGDSKNEEEE 380
Query: 351 -------PSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES 403
+ +D CFGC + AS G+ C KC+K FC CD+YIH+
Sbjct: 381 EKKRKKNSGKDDDDDGQFLRECFGCCVVVDAS---TGMLSKCLKCEKEFCFACDVYIHDR 437
Query: 404 LHNCPGCES 412
LHNC GC S
Sbjct: 438 LHNCVGCLS 446
>gi|170098262|ref|XP_001880350.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644788|gb|EDR09037.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 396
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/403 (39%), Positives = 249/403 (61%), Gaps = 33/403 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE SY RSW+ +QEDE+G L+ S+I R R R R L A I++ +IR+L
Sbjct: 4 TWEASYT--RSWDTVQEDEAGSLQ----SSIEELMARGRRR-RYLLAPAAAIRRTIIRHL 56
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++DLS + + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 57 VLLLDLSASMMDRDMRPTRFDLMLQYAREFIAEWFDQNPLGQIGVVGMRAGIGERIGEMS 116
Query: 149 GSPESHIKALM--GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ +K + KL +G+ S+QNA+++ +N +P++ RE+LI++ +L+TCDPG+
Sbjct: 117 GNPQDVLKYIAERHKLEPTGEPSLQNAIEMARSSMNHLPTHSSREILIIFGSLTTCDPGN 176
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I +TI C ++KIR SV+ L+AEM +C+ LC +TGG + VA++E H K+L+ E PPP
Sbjct: 177 IHDTIDTCVKNKIRISVVALAAEMKVCRELCNKTGGQFGVAMNEGHFKDLLFELIPPPAQ 236
Query: 267 IAEFAI-----------ASLIKMGFPQRAGEGSI-SICSCHKEVKIGVGYTCPRCKARVC 314
A + A L+ MGFP R + + ++C CH E+K G+ CPRC ++VC
Sbjct: 237 HATSRVAGAGTGSSNPAADLMMMGFPTRLPDATAPTLCVCHSELK-SEGFLCPRCLSKVC 295
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ---- 370
++PT+C ICGL +VSSPHLARSYHHLFP+ P+D + D S+C C +
Sbjct: 296 DVPTDCDICGLMIVSSPHLARSYHHLFPVKPYDALPYGDVTD----PSSSCHACSRPFPT 351
Query: 371 SLLASGNKAGLCVA---CPKCKKHFCLECDIYIHESLHNCPGC 410
++ AS + V CP+C FC +CD+++H+ +H CPGC
Sbjct: 352 AVSASATEGVSPVGRYKCPECHHDFCADCDVFVHDVIHCCPGC 394
>gi|157115005|ref|XP_001652513.1| btf [Aedes aegypti]
gi|108877047|gb|EAT41272.1| AAEL007056-PA [Aedes aegypti]
Length = 408
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/401 (41%), Positives = 243/401 (60%), Gaps = 34/401 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA++ED+ G + I A+ +R+ + + + G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDDGLVEGSVADIIQKAKRKRQAMKKGFS------KLGMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D S A D +P+R + K +E F+ EFFDQNP+SQ+G++ +K A +++LGG
Sbjct: 64 VLLDCSEAMTVPDLKPTRFLCTLKLLEIFIEEFFDQNPISQLGVIAMKAKRAEKISELGG 123
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
S H+KA+ G KL +G+ S+QN LDL L +P++ REVL++ +L+TCDP DI
Sbjct: 124 SCRKHVKAVAGLSKLNLTGEPSLQNGLDLALKTLKMVPAHASREVLVVMGSLTTCDPTDI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA- 266
TI+ K IRCSV+ LSAE+ +CK LC ETGG Y LD++H K+ +L+H PP A
Sbjct: 184 HITIEALKAEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDDAHFKDQLLQHIDPPQAG 243
Query: 267 -IAEFAIASLIKMGFPQ-RAGEGS---ISICSCHKEVK------IGVGYTCPRCKARVCE 315
EF SLIKMGFP + EG +++C CH + GY CP+C ++ C+
Sbjct: 244 NQQEF---SLIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLTSGGYHCPQCYSKYCD 300
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP EC CGL L S+PHLARSYHHLFP+ F E L+ H S C+GCQ+ S
Sbjct: 301 LPVECAACGLTLASAPHLARSYHHLFPVPHFQE-----LSFEHQ--ASICYGCQKPFTES 353
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQS 416
+K C C++ FC++CDI+IHE++H+C GC ++ S
Sbjct: 354 TDKT--VYQCGTCQQVFCIDCDIFIHETMHSCVGCTTIPSS 392
>gi|355693895|gb|AER99488.1| proteinral transcription factor IIH, polypeptide 2, 44kDa [Mustela
putorius furo]
Length = 393
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 10 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 61
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 62 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 121
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 122 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 181
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 182 YDLIKTLKSAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 242 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 300
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 301 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEHN-----GEKFCYGCQGEL---- 351
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 352 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 384
>gi|328772181|gb|EGF82220.1| hypothetical protein BATDEDRAFT_19068 [Batrachochytrium
dendrobatidis JAM81]
Length = 409
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/408 (42%), Positives = 250/408 (61%), Gaps = 15/408 (3%)
Query: 14 EEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSL 73
++E+ + NG AWE Y RSW+ L ED+SG L+ + + + +R R R
Sbjct: 5 DDEEHPQSGENGQGYAWEEEYK--RSWDILMEDDSGSLQGM-VATMQQQLLLKRRRLRKE 61
Query: 74 TVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGL 133
T + +Q+G+IR + IVIDLS A AE+D RP+R+ +E FV EFFDQNPLS +G+
Sbjct: 62 TESAIVVQRGIIRQIIIVIDLSAAMAELDLRPNRLDCTLNFLEMFVVEFFDQNPLSHLGI 121
Query: 134 VTVKDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+ KDG+ +L G+P +KAL + +G+ S+QNAL+L L +P + RE
Sbjct: 122 IGTKDGMVEKWAELSGNPSEILKALTKRSNRETAGEPSLQNALELARRSLAHVPMHVSRE 181
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
+++LY +L++CDPGDI ETI + IR SVIGL+AE+ +CK +C T G Y+V +++
Sbjct: 182 IIVLYGSLTSCDPGDIQETINDLCKENIRVSVIGLAAEVQVCKKMCASTNGVYNVIMNDV 241
Query: 252 HSKELILEHAPPPPAI-AEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCK 310
H KE++ H PPPP + + + +++I+MGFP + +CSCH+ I G+ CPRC
Sbjct: 242 HYKEILFAHIPPPPLLQTQLSASNIIQMGFPMMKIFDDMVLCSCHQN-PIQKGHICPRCS 300
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ 370
A +C +PT+C +C L L+SSP LARSYHHLFP+ F E P + S+ CF CQ
Sbjct: 301 ATICNIPTDCCLCSLTLISSPSLARSYHHLFPVPNFTEIPPVQSTSYP--SQVECFSCQT 358
Query: 371 SLLASGNKAGLCV------ACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ +G + ACP+CK H CL+CD+YIH++LHNCPGC S
Sbjct: 359 PSSMTSFHSGTYMIPTARYACPRCKVHVCLDCDVYIHDTLHNCPGCMS 406
>gi|386780666|ref|NP_001247509.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|297675411|ref|XP_002815673.1| PREDICTED: general transcription factor IIH subunit 2 isoform 2
[Pongo abelii]
gi|297675413|ref|XP_002815674.1| PREDICTED: general transcription factor IIH subunit 2 isoform 3
[Pongo abelii]
gi|402871770|ref|XP_003899824.1| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Papio anubis]
gi|402871772|ref|XP_003899825.1| PREDICTED: general transcription factor IIH subunit 2 isoform 2
[Papio anubis]
gi|355691370|gb|EHH26555.1| General transcription factor IIH polypeptide 2 [Macaca mulatta]
gi|355749973|gb|EHH54311.1| General transcription factor IIH polypeptide 2 [Macaca
fascicularis]
gi|380785669|gb|AFE64710.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|383411171|gb|AFH28799.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|384940950|gb|AFI34080.1| general transcription factor IIH subunit 2 [Macaca mulatta]
Length = 395
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|6681762|ref|NP_001506.1| general transcription factor IIH subunit 2 [Homo sapiens]
gi|17380326|sp|Q13888.1|TF2H2_HUMAN RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|496609|emb|CAA82910.1| basic transcripion factor 2, 44 kD subunit [Homo sapiens]
gi|5531809|gb|AAD44479.1| basic transcription factor 2 [Homo sapiens]
gi|146327202|gb|AAI41604.1| General transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
gi|147898053|gb|AAI40304.1| General transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
gi|208968221|dbj|BAG73949.1| General transcription factor IIH subunit 2 [synthetic construct]
Length = 395
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|301760269|ref|XP_002915938.1| PREDICTED: general transcription factor IIH subunit 2-like
[Ailuropoda melanoleuca]
Length = 395
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+G++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEHN-----GEKFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQTVFCVDCDVFVHDSLHCCPGC 385
>gi|114599829|ref|XP_001158018.1| PREDICTED: uncharacterized protein LOC461830 isoform 9 [Pan
troglodytes]
gi|114599831|ref|XP_001158068.1| PREDICTED: uncharacterized protein LOC461830 isoform 10 [Pan
troglodytes]
gi|114599833|ref|XP_001158128.1| PREDICTED: uncharacterized protein LOC461830 isoform 11 [Pan
troglodytes]
gi|397470434|ref|XP_003806827.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|397470436|ref|XP_003806828.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|397470438|ref|XP_003806829.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|410207616|gb|JAA01027.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410258220|gb|JAA17077.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410299712|gb|JAA28456.1| general transcription factor IIH, polypeptide 2, 44kDa [Pan
troglodytes]
gi|410350531|gb|JAA41869.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410350533|gb|JAA41870.1| general transcription factor IIH, polypeptide 2D [Pan troglodytes]
Length = 395
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P H+ +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHVTSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|109809737|ref|NP_001035955.1| general transcription factor IIH subunit 2-like protein [Homo
sapiens]
gi|148922852|ref|NP_001092198.1| general transcription factor IIH subunit 2-like protein [Homo
sapiens]
gi|74737138|sp|Q6P1K8.1|T2H2L_HUMAN RecName: Full=General transcription factor IIH subunit 2-like
protein; AltName: Full=General transcription factor IIH
polypeptide 2-like protein
gi|40353046|gb|AAH64557.1| GTF2H2D protein [Homo sapiens]
gi|40674450|gb|AAH65021.1| General transcription factor IIH, polypeptide 2D [Homo sapiens]
gi|76779844|gb|AAI05981.1| GTF2H2C protein [Homo sapiens]
gi|189054850|dbj|BAG37691.1| unnamed protein product [Homo sapiens]
gi|219521708|gb|AAI71860.1| General transcription factor IIH, polypeptide 2D [Homo sapiens]
gi|312152202|gb|ADQ32613.1| general transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
Length = 395
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|170035936|ref|XP_001845822.1| TFIIH basal transcription factor complex p44 subunit [Culex
quinquefasciatus]
gi|167878421|gb|EDS41804.1| TFIIH basal transcription factor complex p44 subunit [Culex
quinquefasciatus]
Length = 411
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 164/418 (39%), Positives = 249/418 (59%), Gaps = 41/418 (9%)
Query: 13 AEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS 72
A++ED +E WE Y +++WEA++ED+ G + I A+ +R+ +
Sbjct: 2 ADDEDPKEYR-------WETGY--EKTWEAIKEDDDGLVEGSIAEIIQKAKRKRQAMKKG 52
Query: 73 LTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIG 132
+ + G++R+LY+++D S A + D +P+R++ K +E F+ EFFDQNP+SQ+G
Sbjct: 53 FS------KLGMMRHLYVILDCSEAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLG 106
Query: 133 LVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHR 190
++ +K A +T+LGGS HIKA+ + KL +G+ S+QN L+L L +PS+ R
Sbjct: 107 VIAMKAKRAEKITELGGSCRKHIKAVGNLNKLNLTGEPSLQNGLELALKTLKMVPSHASR 166
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDE 250
E+L++ +L+TCDP DI TI K IRCSV+ LSAE+ +CK LC ETGG Y LD+
Sbjct: 167 EILVVMGSLTTCDPTDIHITIDALKSEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDD 226
Query: 251 SHSKELILEHAPPPPA--IAEFAIASLIKMGFPQ-RAGEGS---ISICSCHKEVK----- 299
SH K+ +L+H PP A EF S+IKMGFP + EG +++C CH +
Sbjct: 227 SHFKDQLLQHIDPPQAGNQQEF---SMIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSK 283
Query: 300 -IGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLH 358
GY CP+C ++ CELP EC CGL L S+PHLARSYHHLFP+ + E +
Sbjct: 284 LTSGGYHCPQCYSKYCELPVECTACGLTLASAPHLARSYHHLFPVPHYQELPFQQ----- 338
Query: 359 NISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQS 416
+ C+GCQ+ + +K C C++ FC++CDI++HE++H+C GC ++ S
Sbjct: 339 --QATNCYGCQKLFGETTDKT--IYQCATCRQFFCIDCDIFVHETMHSCVGCTTIPAS 392
>gi|158258154|dbj|BAF85050.1| unnamed protein product [Homo sapiens]
Length = 395
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGIMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|291000862|ref|XP_002682998.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
gi|284096626|gb|EFC50254.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
Length = 349
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 221/338 (65%), Gaps = 19/338 (5%)
Query: 80 IQKGLIRYLYIVIDLSRA---AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
I+KG+IR+LY+VID S ++ D + SR V + F++E+FDQNPLSQ+G++T
Sbjct: 23 IKKGIIRFLYLVIDCSNGIMLPSQHDEKTSRAQSVISTAKEFIKEYFDQNPLSQLGIITT 82
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
K+GVA L +L G+ + + L G GD S+QN L+L + L+QIP+YG +EV+++Y
Sbjct: 83 KNGVAKILKELTGNVKQLVSELKKSFG--GDPSLQNVLNLSYDSLHQIPNYGSKEVVVIY 140
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKEL 256
+LS+CDP +I TI++ K++ IR S+I L AE+F+CK + ++T GTYSV D+ H KE+
Sbjct: 141 CSLSSCDPDNIFSTIKQLKDNNIRVSLISLDAEVFVCKQIAKQTQGTYSVPTDDEHFKEV 200
Query: 257 ILEHAP----PPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKAR 312
++ HA + + ++MGFPQR + S+C CHK++ G GY CPRCK++
Sbjct: 201 LMAHAAPPPTTSSSSTKIVAPPSMRMGFPQRRAQTLYSMCLCHKKITPG-GYICPRCKSK 259
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
C+LP EC CGL LVSSPHLARSYHHLFP+ F + P + + C+GCQ+SL
Sbjct: 260 YCDLPVECSTCGLMLVSSPHLARSYHHLFPVQQFIDYQPREGEEPY------CYGCQKSL 313
Query: 373 LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
++ + + CP C FC+ECD +IHESLHNCPGC
Sbjct: 314 ---PKESFISLQCPSCSNIFCVECDAFIHESLHNCPGC 348
>gi|156844855|ref|XP_001645488.1| hypothetical protein Kpol_1004p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156116152|gb|EDO17630.1| hypothetical protein Kpol_1004p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 497
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 175/426 (41%), Positives = 245/426 (57%), Gaps = 28/426 (6%)
Query: 1 MKNSERSRLNGEAEEEDDEEENLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSA 58
+K+S RS + +++++ + L G G +WE RSW+ + DE G D +A
Sbjct: 82 VKSSNRSHPDRKSKKKKISNDKLQGVSGGYSWEDELK--RSWDLVTVDEEG-----DMTA 134
Query: 59 IYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAF 118
+ + R + + V T Q+G+IR L +V+D S A AE D RP+R V+ + F
Sbjct: 135 LVASLVEARKKRAAQKVVTP-YQRGIIRSLILVLDCSEAMAEKDLRPNRNVMSIQYAIDF 193
Query: 119 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDL 176
EFFDQNP+SQ+G+V +K+G+A LT + G+P+ HI AL + + G+ S+QNAL++
Sbjct: 194 THEFFDQNPISQLGIVIMKNGLAQLLTPVSGNPQEHIDALKSIRRQEPKGNPSLQNALEM 253
Query: 177 VHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 236
GLL +P++ REVLI++ LS+ DPGDI +TIQ E KIR VIGLSA++ IC+ L
Sbjct: 254 ARGLLLPVPAHCTREVLIVFGGLSSTDPGDIHQTIQSLVEEKIRVKVIGLSAQVAICQEL 313
Query: 237 CQETG----GTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISIC 292
C+ T Y + LDE+H KEL E P P +L+KMGFP R E S S C
Sbjct: 314 CKATNYNDDSFYRIILDETHFKELFDEAVTPLPVNKINKGFTLVKMGFPTRVFEDSPSFC 373
Query: 293 SCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS 352
+CH ++ G GY CP C+ +VC LP C C L L+ S HLARSYHHL P+ F E +
Sbjct: 374 ACHSKLVYG-GYFCPNCQNKVCSLPIVCPCCDLMLILSTHLARSYHHLMPLKTFSEVPHT 432
Query: 353 RLNDLHNISRSTCFGCQQSL-LASGNKAGLCVA-----CPKCKKHFCLECDIYIHESLHN 406
N CF CQ + K G + C CK+ FC++CD++IHE LHN
Sbjct: 433 E-----NFPTDNCFSCQIRFPVLRNQKTGELLTSSRYRCTDCKQDFCIDCDVFIHEVLHN 487
Query: 407 CPGCES 412
CPGCE+
Sbjct: 488 CPGCEA 493
>gi|156387918|ref|XP_001634449.1| predicted protein [Nematostella vectensis]
gi|156221532|gb|EDO42386.1| predicted protein [Nematostella vectensis]
Length = 400
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/391 (40%), Positives = 238/391 (60%), Gaps = 25/391 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
W Y +++WEA++ED+ G L+ + + + H R+R+ R ++ G++R+LY
Sbjct: 15 WLSQY--EKTWEAIREDDEGSLQTLVDELV-HRSKRQRVAARP-----GNVRLGMMRHLY 66
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I+ID+S+A E D +P+R+ AK +E F+ E+FDQNP+SQ+GL+ K+ A L++L G
Sbjct: 67 IIIDMSKAMEEADLKPNRLSCSAKLLENFITEYFDQNPISQLGLIITKNKRAEKLSELSG 126
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ HI + C G+ S+QNAL L L +P + REVL+L +L++CDPGDI
Sbjct: 127 NPKLHISTIQSACSKPCVGEPSLQNALVLAMQSLKHMPGHVSREVLVLMGSLTSCDPGDI 186
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
ET++ K +RCS++GL+AEM +CK +C T G+Y V LDE H K+L++EH PP A
Sbjct: 187 TETVKSLKNMNVRCSIVGLAAEMRVCKQICSSTNGSYRVVLDERHFKDLLMEHVIPPTAT 246
Query: 268 AEFAIASLIKMGFPQRAGEGSISICSCHKEVK-----IGVGYTCPRCKARVCELPTECRI 322
+ L + F S+ H + K GY CP+C+++ C+LP EC++
Sbjct: 247 VRICLV-LWYVIFESYCYIHVFSVIRSHMDNKNIKEFTTKGYFCPQCRSKYCDLPVECKV 305
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEA-TPSRLNDLHNISRSTCFGCQQSLLASGNKAGL 381
CGL LVS+PHLARSY HLFP+ + E P+++ TC CQ +L +
Sbjct: 306 CGLTLVSAPHLARSYQHLFPLQQYTEVNVPAQIP---GQPPWTCQACQITL----TEKTA 358
Query: 382 CVACPKCKKHFCLECDIYIHESLHNCPGCES 412
C +CP+C+ FCL+CDIYIHESLH CPGC +
Sbjct: 359 C-SCPECRHVFCLDCDIYIHESLHTCPGCTA 388
>gi|348569038|ref|XP_003470305.1| PREDICTED: general transcription factor IIH subunit 2-like [Cavia
porcellus]
Length = 395
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 235/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+VID SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVIDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAIDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIAALSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYK-----GERFCYGCQGQL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|195377775|ref|XP_002047663.1| GJ11798 [Drosophila virilis]
gi|194154821|gb|EDW70005.1| GJ11798 [Drosophila virilis]
Length = 442
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/417 (38%), Positives = 255/417 (61%), Gaps = 36/417 (8%)
Query: 14 EEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSL 73
+E+DD++E WE Y +++WEA++ED+ G L + AI + + + ++
Sbjct: 4 DEQDDQKEY------RWETGY--EKTWEAIKEDDDGLL----DGAIAEIIQKAKRKRQAD 51
Query: 74 TVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGL 133
+ R+ G++R+++IV+D S + + D +P+R++ K +E F+ EFFDQNP+SQ+G+
Sbjct: 52 KIKQNRL--GMMRHMFIVLDCSESMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGI 109
Query: 134 VTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+ +K A +T+L G+ H+KAL G + + + S+QN LDL L +PS+ RE
Sbjct: 110 IALKAKRAEKVTELTGTSRVHLKALAGLANVSLTSEPSLQNGLDLALKTLKVVPSHASRE 169
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
++I+ +L+TCDP DI +TI + K +IRCSVI LSAE+ IC++L Q+T GT+ +D++
Sbjct: 170 IVIIMGSLTTCDPVDINQTIDELKRERIRCSVISLSAEIHICRYLTQQTMGTFGAVMDDA 229
Query: 252 HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKI 300
H ++ +L PPPA A+ SLI+MGFP E +S+C CH E
Sbjct: 230 HYRDQLLAQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDAPLSMCMCHIENLDEPSELS 288
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD----EATPSRLND 356
G+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+ E+ P D
Sbjct: 289 TTGHHCPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELPFESVPPAAPD 348
Query: 357 LHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
++ + C+GC + L A +K+ C C + FC++CDI+IHE+LH C GC ++
Sbjct: 349 CGSLRK--CYGCIKVLNAQTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|452824299|gb|EME31303.1| transcription initiation factor TFIIH subunit H2 isoform 1
[Galdieria sulphuraria]
Length = 398
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/407 (39%), Positives = 249/407 (61%), Gaps = 17/407 (4%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DD+E+ + L +WE+ RSWE L+EDE+G ++ D S+ ++ +R+ +
Sbjct: 2 DDDEKPESLTLYSWEQDIV--RSWETLEEDETGKIK--DLSSFERSRVKRKRKN-----T 52
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
+++GLIR+L +++DLSR A E D +PSR V + F+ +F++NP+SQ+ +V +
Sbjct: 53 QQNVRRGLIRFLVLILDLSREAKETDVKPSRGEVCLSCAQKFLYSYFNENPISQLAVVVL 112
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
+DGVA L+ +G +P H + + + G G+ S+QN LD+ LL+ IPSYG REVLI
Sbjct: 113 RDGVAEKLSSMGSNPRQHSEVVKNANQKGFYGNCSLQNGLDVALSLLHSIPSYGSREVLI 172
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
LY+++S+CDPGDI +TI+K ++ +IRC+VIG++AE++I K+L T G+Y V ++ESH
Sbjct: 173 LYNSISSCDPGDIRQTIEKLEKERIRCNVIGMAAELYILKYLAARTHGSYFVCMNESHLL 232
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
EL+ + P I +L++MGFP +C K ++ V + CPRC+
Sbjct: 233 ELLEDFVVPSALIENNTKTALVRMGFPTLKAYKEPKVCLNDKVLRNQV-FVCPRCECCYG 291
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
E+P EC +CGL LVSS LARSYHHLFP+A F E + H + CF C+ +
Sbjct: 292 EIPIECVLCGLILVSSSQLARSYHHLFPVANFHELEEDKYKQSH-FQPNYCFACKGTFPF 350
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVA 421
G++ CP C+ FC CDI+IH+ L+NCPGCE +R N + +
Sbjct: 351 EGSEY---FVCPNCQNIFCGICDIFIHDGLNNCPGCE-IRPENRIAS 393
>gi|19075300|ref|NP_587800.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces pombe 972h-]
gi|26400388|sp|O74995.1|TFH47_SCHPO RecName: Full=TFIIH basal transcription factor complex p47 subunit;
AltName: Full=Suppressor of stem-loop protein 1 homolog;
Short=SSL1 homolog
gi|3406059|gb|AAC29144.1| TFIIH subunit p47 [Schizosaccharomyces pombe]
gi|3560161|emb|CAA20673.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces pombe]
Length = 421
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/430 (39%), Positives = 242/430 (56%), Gaps = 35/430 (8%)
Query: 3 NSERSRLNGEAEEEDDEEENLNGGLEA----------WERSYADDRSWEALQEDESGFLR 52
N + + + E +DE++N + + WE Y RSW+ +QED G L
Sbjct: 2 NENQKSFDSDKSESEDEQKNGRVKVRSRKTDDNEGYTWEGEY--QRSWDIVQEDAEGSLV 59
Query: 53 PIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVA 112
+ I + +R LR T +Q+G+IR++ +V+DLS + E DF R +
Sbjct: 60 GVIAGLIQSGKRKRLLRD------TTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQI 113
Query: 113 KQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQN 172
K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL G+P+SHI+ L CSG+ S+QN
Sbjct: 114 KYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQN 173
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
AL++ L+ I S+G REVLI++ ++ + DPGDI +TI IR ++GL+AE+ I
Sbjct: 174 ALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAI 233
Query: 233 CKHLCQETGGT----YSVALDESHSKELILEHAPPPPA-IAEFAIASLIKMGFPQRAGEG 287
CK +C +T + Y V + E H +EL+LE PP A+ ASL+ MGFP + E
Sbjct: 234 CKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQ 293
Query: 288 SISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD 347
S+C+CH G G+ CPRCKA+VC LP EC C L L+ S HLARSYHHLFP+ +
Sbjct: 294 LPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWS 352
Query: 348 EATPSRLNDLHNISRSTCFGCQQSLLA------SGNKAGLCVACPKCKKHFCLECDIYIH 401
E S N + CF CQ + + + ACP CK HFCL+CD++ H
Sbjct: 353 EIPWSA-----NPKSTHCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAH 407
Query: 402 ESLHNCPGCE 411
E LH C GC+
Sbjct: 408 EQLHECYGCQ 417
>gi|50308759|ref|XP_454384.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643519|emb|CAG99471.1| KLLA0E09615p [Kluyveromyces lactis]
Length = 488
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 236/406 (58%), Gaps = 31/406 (7%)
Query: 21 ENLNGGLEAWERSYADD--RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
+ +NGG AWE DD RSW+ ++ D+ G + I S + R+ R TV
Sbjct: 92 QGVNGGY-AWE----DDIQRSWDLVKVDDEGNIAAIVASIVE----ARKKRAAEKTVTP- 141
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
Q+G+IR L +V+D S A E D RP+R + + F+ E+FDQNP+SQIG+V ++D
Sbjct: 142 -YQRGIIRTLILVLDCSEAMMEKDLRPNRYAMTVQYAVDFIHEYFDQNPISQIGVVVMRD 200
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
G+A ++ + G+P+ HI AL + + G++S+QNAL++ GLL +P++ REVLI++
Sbjct: 201 GLAQLISQVSGNPQEHIDALKMLRRQEPKGNASLQNALEMARGLLLHVPAHCTREVLIVF 260
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET----GGTYSVALDESH 252
ALST DPGDI +TI IR VIGLSA++ +CK LC++T Y + L++ H
Sbjct: 261 GALSTTDPGDIHQTIGSLVHENIRAKVIGLSAQVSVCKELCKQTNYGDNSYYGIILNDHH 320
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKAR 312
KEL P P +L+KMGFP R E + S C+CH + G GY CP CK +
Sbjct: 321 FKELFTSAVTPLPVSKVNKGFTLVKMGFPTRVFEDTPSFCACHSTLVHG-GYVCPNCKTK 379
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
VC LPT C C L L+ S HLARSYHHL P+ F E S + CFGCQ+
Sbjct: 380 VCSLPTVCPSCDLMLILSTHLARSYHHLMPLKTFQEVPVS-----DSFPTDYCFGCQKRF 434
Query: 373 -LASGNKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
NK G + C +C + FC++CD++IHE+LHNCPGCES
Sbjct: 435 PTLRNNKTGELLTSSRYRCEECDQDFCIDCDVFIHETLHNCPGCES 480
>gi|255634763|gb|ACU17743.1| unknown [Glycine max]
Length = 214
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/190 (80%), Positives = 175/190 (92%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
LEAWER+YA+DRSWEALQEDESG LRPID +AIYHAQYRRRLR + T ATARIQKGLIR
Sbjct: 24 LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YLYIV+DLS+AA+E DFRPSRM V+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+
Sbjct: 84 YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
LGGSPESHIKALMGKL CSGD+S+QNAL+LV G LNQIPSYGHREVLILYSALSTCDPGD
Sbjct: 144 LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203
Query: 207 IMETIQKCKE 216
+METI + ++
Sbjct: 204 LMETIPEMQK 213
>gi|158293200|ref|XP_314533.4| AGAP010559-PA [Anopheles gambiae str. PEST]
gi|157016844|gb|EAA09916.5| AGAP010559-PA [Anopheles gambiae str. PEST]
Length = 421
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/421 (38%), Positives = 252/421 (59%), Gaps = 37/421 (8%)
Query: 13 AEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS 72
A+EED +E WE Y +++WEA++ED+ G + + I A+ +R+ R
Sbjct: 2 ADEEDPKEYR-------WETGY--EKTWEAIKEDDDGLIEGSVSDIIQKAKRKRQAMKRG 52
Query: 73 LTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIG 132
+ + G++R+LY+++D S A D +P+R + K +E F+ EFFDQNP+SQ+G
Sbjct: 53 FS------KLGMMRHLYVLLDCSEAMTVPDLKPTRFICSLKLLELFIEEFFDQNPISQLG 106
Query: 133 LVTVKDGVANCLTDLGGSPESHIKA---LMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH 189
++ +K A +++LGG+ HIKA L + G+ S+QN L+L L IP +
Sbjct: 107 VIAMKAKRAEKISELGGTSRKHIKAVHALTNGVPLVGEPSLQNGLELALKTLRMIPQHAS 166
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALD 249
RE+L++ +L++CDP D+ TI+ K +RCSV+ LSAE+ ICK LC ETGG + LD
Sbjct: 167 REILVIMGSLTSCDPNDVHLTIENLKTEGVRCSVLSLSAEIRICKFLCTETGGLFGAVLD 226
Query: 250 ESHSKELILEHAPPPPA--IAEFAIASLIKMGFP----QRAGEGSISICSCH-----KEV 298
++H K+ +L+H PP A EF SLIKMGFP + E +++C CH +
Sbjct: 227 DAHYKDQLLQHIDPPQAGNQQEF---SLIKMGFPHGKTESGKEPPLTMCMCHIDSVDEPA 283
Query: 299 KIGV-GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT--PSRLN 355
K+ GY CP+C ++ CELP EC CGL L S+PHLARSYHHLFP+ F+E ++
Sbjct: 284 KLTSGGYHCPQCYSKYCELPVECSACGLTLASAPHLARSYHHLFPVPHFNELPLEQVQVQ 343
Query: 356 DLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
+ + + C+ CQ++L + +K + C CK+ FC++CDI+IHE+LH+C GC ++
Sbjct: 344 EPRDPPVTNCYACQKTLASGTDK--MVYECDACKQVFCIDCDIFIHETLHSCVGCTTIPA 401
Query: 416 S 416
S
Sbjct: 402 S 402
>gi|331241057|ref|XP_003333178.1| hypothetical protein PGTG_14725 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312168|gb|EFP88759.1| hypothetical protein PGTG_14725 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 462
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 173/419 (41%), Positives = 246/419 (58%), Gaps = 55/419 (13%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE Y RSW+ L+EDESG L N I A RRR+ T IQ+G+IR+L
Sbjct: 61 SWEEEYK--RSWDVLREDESGSLESAVNQLI--ANKRRRV-----IRDTTSIQRGIIRHL 111
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++ID+S A + D RP+R+ + + FV EFFDQNP+SQ+ ++ KD +A L+ L
Sbjct: 112 CLIIDVSLAMTDRDLRPNRLDMSLTYAKEFVTEFFDQNPISQLCILITKDAIAERLSGLS 171
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P H KAL KL SG+ S+QN+L++ L+ +PS+G REVL+++ +L+TCDP D
Sbjct: 172 GNPLDHHKALSNKAKLTPSGEPSLQNSLEMARASLSHLPSHGSREVLVIFGSLTTCDPDD 231
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I +T++ ++ ++R S++GL+AE+ ICK +C+ T G Y V L+E H KEL+ E PPP
Sbjct: 232 INKTLENLEKDRMRVSMVGLAAEVRICKEICKRTQGQYGVILNEHHFKELLFEAISPPP- 290
Query: 267 IAEFAI-------ASLIKMGFPQR-------AGEGSISICSCHKEVKIGVGYTCPRCKAR 312
IA+ +SLI+MGFP + + S C+CH +++ G+ CPRC ++
Sbjct: 291 IAKSTTNGPKTQSSSLIQMGFPNKITHDAHQVDASTHSFCACHSKLQ-STGFICPRCGSK 349
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
CE+PT C +CGL +VSSPHLARSY HLFP++ + E + L+ H + CFGC + L
Sbjct: 350 NCEIPTNCSVCGLTIVSSPHLARSYRHLFPVSNWIEKNANSLS--HQTFK--CFGCDKEL 405
Query: 373 LASGNKAGLC---------------------VACPKCKKHFCLECDIYIHESLHNCPGC 410
NKA CP+CK FC ECDIY HE L CPGC
Sbjct: 406 QV--NKASQTNDESNGNSNNATNANNPSINLYHCPRCKNMFCYECDIY-HEQLGLCPGC 461
>gi|195019313|ref|XP_001984954.1| GH16776 [Drosophila grimshawi]
gi|193898436|gb|EDV97302.1| GH16776 [Drosophila grimshawi]
Length = 443
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/417 (39%), Positives = 251/417 (60%), Gaps = 36/417 (8%)
Query: 14 EEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSL 73
+E+DD++E WE Y +++WEA++ED+ G L I A+ +R+
Sbjct: 4 DEQDDQKEY------RWETGY--EKTWEAIKEDDDGLLDGAIAELIQKAKRKRQAE---- 51
Query: 74 TVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGL 133
T + + G++R+++IV+D S A + D +P+R++ K +E F+ EFFDQNP+SQ+G+
Sbjct: 52 --KTKQNRLGMMRHMFIVLDCSEAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGI 109
Query: 134 VTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+ +K A +T+L G+ H+KAL M + + + S+QN LDL L +PS+ RE
Sbjct: 110 IALKAKRAEKITELTGTSRVHLKALAGMANVSLTSEPSLQNGLDLALKTLKVVPSHASRE 169
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
++I+ +L+TCDP DI TI + K+ +IRCSVI LSAE+ IC++L Q+T GT+ LD+S
Sbjct: 170 IVIIMGSLTTCDPVDINLTIDELKKERIRCSVISLSAEIHICRYLTQQTMGTFGAVLDDS 229
Query: 252 HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKEV------KI 300
H ++ +L PPPA A+ SLI+MGFP E +S+C CH E
Sbjct: 230 HYRDQLLSQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDEPLSMCMCHIENLEEPSGLS 288
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD----EATPSRLND 356
G+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+ E+ P D
Sbjct: 289 TTGHHCPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELPFESVPPAAPD 348
Query: 357 LHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
++ + C+ C + L +K+ C C + FC++CDI+IHE+LH C GC ++
Sbjct: 349 CGSLRK--CYACIKVLNGLTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|126314992|ref|XP_001364912.1| PREDICTED: general transcription factor IIH subunit 2-like
[Monodelphis domestica]
Length = 395
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 233/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R ++Q G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVQLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L L L +P + REVL+L+S+L+TCDP +I
Sbjct: 123 NPRKHIASLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLVLFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGG Y V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGAYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E + N C GC L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEVSLEEYN-----GERFCHGCLGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD++IHESLH CPGC
Sbjct: 353 -KDQHVYICTVCQNVFCVDCDLFIHESLHCCPGC 385
>gi|410925308|ref|XP_003976123.1| PREDICTED: general transcription factor IIH subunit 2-like
[Takifugu rubripes]
Length = 392
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 167/395 (42%), Positives = 239/395 (60%), Gaps = 34/395 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ ++ RR L + +++ G++R+L+
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEEILFQSKKRR------LIESHGQVRLGMMRHLF 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+VID SR+ + D +P+R+ K +EAFV E+FDQNP+SQ+GL+T K+ A LTDL G
Sbjct: 63 VVIDCSRSMEDQDLKPNRLTSTLKLLEAFVDEYFDQNPISQMGLITTKNKRAEKLTDLSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ H AL + C G+ S+ N L L L +P + RE+LI+ S+L+TCDP +I
Sbjct: 123 NPKKHCAALKKAVDTVCVGEPSLYNCLSLAVQTLRHMPGHTSRELLIILSSLTTCDPANI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
E I+ K K+R SVIGLSAE+ +C L +ETGG+Y V LDESH KEL++ H PPPA
Sbjct: 183 YELIETLKTLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC----SCHKEVKIGVGYTCPRCKARVCE 315
+ + SLI+MGFPQ + S S+ S ++ +G GY CP+C A+ E
Sbjct: 242 SSSSECSLIRMGFPQHTVASLTDQDAKPSFSMAHLDSSSGPDLSLG-GYFCPQCHAKYTE 300
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LP EC++CGL LV +PHLARS+HHLFP+ F E+ L + +C C L
Sbjct: 301 LPVECKVCGLTLVLAPHLARSFHHLFPLQVFTESPADDLQ-----TERSCQACHGEL--- 352
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K +CP C FC++C ++IH+SLH CP C
Sbjct: 353 --KDKSVFSCPSCLSVFCVDCHLFIHDSLHCCPCC 385
>gi|426197578|gb|EKV47505.1| hypothetical protein AGABI2DRAFT_204710 [Agaricus bisporus var.
bisporus H97]
Length = 452
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 254/405 (62%), Gaps = 36/405 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE SY RSWE +QEDE+G L+ +++ R R R R L A A I++ +IR++
Sbjct: 59 TWEASYT--RSWETVQEDEAGSLQ----TSVQELMARGR-RKRLLAPAAA-IRRTIIRHV 110
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++DLS A + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + DL
Sbjct: 111 ILLLDLSSAMLDRDMRPTRFDLMLQYAREFILEWFDQNPLGQIGVVGMRAGLGERIGDLS 170
Query: 149 G---SPE---SHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
G +P+ S+IK KL +G+ S+QNA+++ ++ +P++ RE++I++ +L+TC
Sbjct: 171 GESGNPQEVLSYIKE-RHKLEPTGEPSLQNAIEMAKASMSHLPTHSSREIIIIFGSLTTC 229
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAP 262
DPG+I ET++ C ++K+R SV+ L+AEM IC+ L +TGG + VA++E H K+L+ E P
Sbjct: 230 DPGNIHETLETCVKNKVRISVVALAAEMKICRELSDKTGGQFGVAMNEGHFKDLLFELVP 289
Query: 263 PPP---------AIAEFAIASLIKMGFPQRAGEGSI-SICSCHKEVKIGVGYTCPRCKAR 312
PP A + A L+ MGFP R E S ++C CH E+K G+ CPRC A+
Sbjct: 290 PPAQRALTRTMGAPSASLSADLMMMGFPTRLPEASAPTLCVCHAELK-SQGFLCPRCLAK 348
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
VC++PT+C +CGL +VSSPHLARSYHHLFP+ P+D A P+ L D+ S C GC +
Sbjct: 349 VCDVPTDCHVCGLMIVSSPHLARSYHHLFPVKPYD-AVPN-LEDIPQPS-DACHGCAKLF 405
Query: 373 LASGN---KAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGC 410
+ + G+ V CP C+ FC +CD+++HE +H CPGC
Sbjct: 406 PTTTSIPIGEGVSVVGRYRCPDCRHDFCSDCDVFVHEVIHCCPGC 450
>gi|345304797|ref|XP_001512459.2| PREDICTED: general transcription factor IIH subunit 2-like
[Ornithorhynchus anatinus]
Length = 395
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------ICEHHGQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P H AL + C G+ S+ N+L L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHTTALKKAVDMTCLGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH KEL++ H PPPA
Sbjct: 183 YDLIKSLKTAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLIHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC++CGL LVS+PHLARSYHHLFP+ F E + L + H C GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEIS---LEEYHG--ERVCQGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC+ECD+++H+ LH CPGC
Sbjct: 353 -KDQQVYICTVCQSVFCVECDLFVHDFLHCCPGC 385
>gi|390459877|ref|XP_002744933.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Callithrix jacchus]
Length = 404
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 237/403 (58%), Gaps = 41/403 (10%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P H+ +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHVTSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRIC---------GLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFG 367
P EC+IC GL LVS+PHLARSYHHLFP+ PF E N C+G
Sbjct: 302 PVECKICGKKPSIHYSGLTLVSAPHLARSYHHLFPLDPFQEILLEEYN-----GERFCYG 356
Query: 368 CQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
CQ L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 357 CQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 394
>gi|367014707|ref|XP_003681853.1| hypothetical protein TDEL_0E03990 [Torulaspora delbrueckii]
gi|359749514|emb|CCE92642.1| hypothetical protein TDEL_0E03990 [Torulaspora delbrueckii]
Length = 464
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 232/399 (58%), Gaps = 26/399 (6%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
G AWE RSW+ + DE G + + S I + R L+ Q+G+I
Sbjct: 75 GGYAWEDEIK--RSWDLVTVDEDGDMSALAASLIESRKKRSALKN------ITPYQRGII 126
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R L +V+D S A AE D RP+R ++ + FV EFFDQNP+SQ+G+VT+++G+A ++
Sbjct: 127 RTLVLVLDCSEAMAEKDLRPNRHAMIVQYAIDFVHEFFDQNPISQLGIVTMRNGLAQLIS 186
Query: 146 DLGGSPESHIKA--LMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
+ G+P+ HI A L+ K G+ S+QNAL++ GLL +P++ +EVLI++ +LS+ D
Sbjct: 187 QISGNPQDHIDALKLIRKQEPKGNPSLQNALEMSRGLLLPVPAHCTKEVLIVFGSLSSTD 246
Query: 204 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILE 259
PGDI +TI + IR VIGLSA++ ICK LC+ T Y V LDE+H KEL +
Sbjct: 247 PGDIHQTINSLVQESIRVKVIGLSAQVAICKELCKATNYGDESYYQVPLDETHCKELFDQ 306
Query: 260 HAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTE 319
P P +L++MGFP R E S + C+CH ++ G GY CP C+++VC LPT
Sbjct: 307 AVVPLPVNKINKGFTLVRMGFPTRIFEDSPTFCACHSQLMYG-GYFCPNCQSKVCSLPTV 365
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN-K 378
C C L L+ S HLARSYHHL P+ F E PS + CF CQ N K
Sbjct: 366 CPCCDLMLILSTHLARSYHHLMPLKTFTEV-PS----VEEFPTDNCFSCQIRFPTIKNHK 420
Query: 379 AGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G + C CKK FC++CD+YIHE LHNCPGCES
Sbjct: 421 TGELLTSSRYRCESCKKDFCIDCDVYIHEILHNCPGCES 459
>gi|409080664|gb|EKM81024.1| hypothetical protein AGABI1DRAFT_71744 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 452
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 254/405 (62%), Gaps = 36/405 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE SY RSWE +QEDE+G L+ +++ R R R R L A A I++ +IR++
Sbjct: 59 TWEASYT--RSWETVQEDEAGSLQ----TSVQELMARGR-RKRLLAPAAA-IRRTIIRHV 110
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++DLS A + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + DL
Sbjct: 111 ILLLDLSSAMLDRDMRPTRFDLMLQYAREFILEWFDQNPLGQIGVVGMRAGLGERIGDLS 170
Query: 149 G---SPE---SHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
G +P+ S+IK KL +G+ S+QNA+++ ++ +P++ RE++I++ +L+TC
Sbjct: 171 GESGNPQEVLSYIKE-RHKLEPTGEPSLQNAIEMAKASMSHLPTHSSREIIIIFGSLTTC 229
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAP 262
DPG+I ET++ C ++K+R SV+ L+AEM IC+ L +TGG + VA++E H K+L+ E P
Sbjct: 230 DPGNIHETLETCVKNKVRISVVALAAEMKICRELSDKTGGQFGVAMNEGHFKDLLFELVP 289
Query: 263 PPP---------AIAEFAIASLIKMGFPQRAGEGSI-SICSCHKEVKIGVGYTCPRCKAR 312
PP A + A L+ MGFP R E S ++C CH E+K G+ CPRC A+
Sbjct: 290 PPAQRALTRTMGAPSASLSADLMMMGFPTRLPEASAPTLCVCHAELK-SQGFLCPRCLAK 348
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
VC++PT+C +CGL +VSSPHLARSYHHLFP+ P+D A P+ L D+ S C GC +
Sbjct: 349 VCDVPTDCHVCGLMIVSSPHLARSYHHLFPVKPYD-AVPN-LEDIPQPS-DACHGCAKLF 405
Query: 373 LASGN---KAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGC 410
+ + G+ V CP C+ FC +CD+++HE +H CPGC
Sbjct: 406 PMTTSIPIGEGVSVVGRYRCPDCRHDFCSDCDVFVHEVIHCCPGC 450
>gi|225543398|ref|NP_071294.3| general transcription factor IIH subunit 2 [Mus musculus]
gi|18203119|sp|Q9JIB4.1|TF2H2_MOUSE RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|9082152|gb|AAF82753.1| general transcription factor IIH polypeptide 2 [Mus musculus]
Length = 396
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/396 (42%), Positives = 237/396 (59%), Gaps = 35/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC-----SCHKEVKIGVGYTCPRCKARVC 314
+ SLI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYK-----GERFCYGCQGEL-- 353
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 ---KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|16740713|gb|AAH16231.1| Gtf2h2 protein [Mus musculus]
gi|148668487|gb|EDL00806.1| general transcription factor II H, polypeptide 2, isoform CRA_a
[Mus musculus]
Length = 398
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/396 (42%), Positives = 237/396 (59%), Gaps = 35/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC-----SCHKEVKIGVGYTCPRCKARVC 314
+ SLI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYK-----GERFCYGCQGEL-- 353
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 ---KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|194876451|ref|XP_001973778.1| GG16285 [Drosophila erecta]
gi|190655561|gb|EDV52804.1| GG16285 [Drosophila erecta]
Length = 438
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/416 (38%), Positives = 252/416 (60%), Gaps = 31/416 (7%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE+E+ WE Y +++WEA+++DE G L I A+ +R+ +
Sbjct: 3 DDEQEDQKE--YRWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQ------K 52
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +
Sbjct: 53 TKQNRLGMMRHMFLVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGIIAL 112
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A +T+L G+ H+KAL + + + + S+QN LDL L +PS+ RE++I
Sbjct: 113 KAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVI 172
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ +L+TCDP DI TI + K IRCSVI LSAE+ + ++L Q+T GT+ LD++H +
Sbjct: 173 IMGSLTTCDPVDINITIDELKREGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFR 232
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKIGVG 303
+ ++ PPPA A+ SLI+MGFP E +S+C CH E G
Sbjct: 233 DQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTG 291
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD----EATPSRLNDLHN 359
+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+ EA P+ +DL+N
Sbjct: 292 HHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLNN 351
Query: 360 ISRSTCFGCQQSLLASGNKAG--LCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
R C+ C ++L +KA + C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 352 GVRE-CYACAKALGQGVDKAADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|126320570|ref|XP_001362699.1| PREDICTED: general transcription factor IIH subunit 2-like
[Monodelphis domestica]
Length = 395
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 234/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDASRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ H+ +L + C G+ S+ N+L L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPKKHVASLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGG Y V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSVIGLSAEVRVCTVLARETGGVYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E + N C GC L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEVSLEEYN-----GERFCQGCLGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD++IHESLH CPGC
Sbjct: 353 -KDQHVYICTVCQNVFCVDCDLFIHESLHCCPGC 385
>gi|242008465|ref|XP_002425024.1| TFIIH basal transcription factor complex p44 subunit, putative
[Pediculus humanus corporis]
gi|212508673|gb|EEB12286.1| TFIIH basal transcription factor complex p44 subunit, putative
[Pediculus humanus corporis]
Length = 401
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 161/400 (40%), Positives = 243/400 (60%), Gaps = 31/400 (7%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA+++DE G + + I + R+R + L R+ GL+R++Y
Sbjct: 11 WETGY--EKTWEAIRDDEGGRIEEASVNEIIEKEKRKR---QELKTGNRRL--GLMRHVY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
++ID S A + D P+R + K +E F+ EFF+QNP++Q+G++ ++ A L+DL G
Sbjct: 64 LIIDCSEAMLDQDLSPNRQLCTVKLLEGFIDEFFEQNPIAQMGVIITRNKRAEKLSDLAG 123
Query: 150 --SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ I +G L C+G S+QNAL+L L P++ REV+ + + L+TCDPG++
Sbjct: 124 VSKRQKEIIKSIGDLACTGQPSLQNALELAGKSLKLRPTHASREVIAIIANLTTCDPGNV 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+TI+ KE IRCSVIGL+AE+++ K L +ET GTYSV LD+ H K + + PP
Sbjct: 184 ADTIRFMKEENIRCSVIGLAAEVYVYKTLTKETKGTYSVILDDVHFKNQLFQQIDPPAMT 243
Query: 268 AEFAIASLIKMGFPQRA---GEGSISICSCH---KEVKIGV-GYTCPRCKARVCELPTEC 320
+ + ASLIKMGFP + + S+ +C CH EVK+ GY CP+C A+ CELP EC
Sbjct: 244 SNLS-ASLIKMGFPHHSLHDDKSSLGLCMCHLDDSEVKLKSDGYKCPQCAAKYCELPVEC 302
Query: 321 RICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAG 380
++C L LVS+PHLAR++HHLFP+ F+ D N + CFGCQ+ + G+
Sbjct: 303 KVCSLTLVSAPHLARTFHHLFPVQSFERF------DGKN-AEGYCFGCQKK-FSEGDT-- 352
Query: 381 LCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVV 420
C KC++ FC CDI++H+SL CPGC +NP++
Sbjct: 353 YLYKCNKCEQRFCGVCDIFVHDSLRTCPGC----ATNPLL 388
>gi|3327882|dbj|BAA31745.1| SSL1 [Schizosaccharomyces pombe]
Length = 392
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 229/394 (58%), Gaps = 25/394 (6%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE Y RSW+ +QED G L + I + +R LR T +Q+G+IR++
Sbjct: 9 TWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRD------TTPLQRGIIRHM 60
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+DLS + E DF R + K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL
Sbjct: 61 VLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLH 120
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
G+P+SHI+ L CSG+ S+QNAL++ L+ I S+G REVLI++ ++ + DPGDI
Sbjct: 121 GNPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIF 180
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT----YSVALDESHSKELILEHAPPP 264
+TI IR ++GL+AE+ ICK +C +T + Y V + E H +EL+LE PP
Sbjct: 181 KTIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPP 240
Query: 265 PA-IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRIC 323
A+ ASL+ MGFP + E S+C+CH G G+ CPRCKA+VC LP EC C
Sbjct: 241 ATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSC 299
Query: 324 GLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA------SGN 377
L L+ S HLARSYHHLFP+ + E S N + CF CQ +
Sbjct: 300 SLVLILSTHLARSYHHLFPLKNWSEIPWSA-----NPKSTHCFACQLPFPKPPVSPFDES 354
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
+ + ACP CK HFCL+CD++ HE LH C GC+
Sbjct: 355 TSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 388
>gi|302916479|ref|XP_003052050.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732989|gb|EEU46337.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 469
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 178/426 (41%), Positives = 241/426 (56%), Gaps = 52/426 (12%)
Query: 29 AWERSYADDRSWEA--LQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
AWE+S R+WE +ED+ G L +A+ + +R LR T +Q+G+IR
Sbjct: 48 AWEKS---KRTWETNLPEEDQDGLL---SLTALEAEKRKRLLRD------TTPLQRGIIR 95
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
+L +V+D+S A AE D P+R + + AFVREFF+QNP+SQ+G++ ++DGVA ++D
Sbjct: 96 HLVLVLDMSFAMAEKDLLPTRYRLTLRYAAAFVREFFEQNPISQLGIIGMRDGVAVRISD 155
Query: 147 LGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204
+GG+P H++ L G G+ S+QNAL++ G L PS+G REVLI+Y AL + DP
Sbjct: 156 VGGNPAEHLERLKGLEDQDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDP 215
Query: 205 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEH 260
GDI ET+ +IR S++GLSA++ IC LC T Y+VA+DE H +EL L
Sbjct: 216 GDIHETVGNLITDRIRVSIVGLSAQVAICADLCSRTNAGDESQYNVAMDEVHFRELFLAA 275
Query: 261 APPPPA-IAEFAIASLIKMGFPQRA--GEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
PP AE + ASL+ MGFP R G S C+CH GY C RC ARVC LP
Sbjct: 276 TTPPVTRTAEQSTASLLMMGFPSRTLVAGGDTSYCACHNR-PFREGYLCTRCSARVCRLP 334
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSL---- 372
EC CGL L+ S HLARSYHHLFP+ + E N +RS CF CQ
Sbjct: 335 AECPACGLTLILSTHLARSYHHLFPLRNWVEVP------WANAARSAACFSCQAPFPEPP 388
Query: 373 ---------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
A G AC C++HFC++CD++ HE +HNCPGC+S+ Q
Sbjct: 389 KTKAPDKPKEDAGPKPAKGVSESGRYACEVCRQHFCIDCDVFAHEVIHNCPGCQSIVQKT 448
Query: 418 --PVVA 421
PV A
Sbjct: 449 DGPVSA 454
>gi|354488323|ref|XP_003506320.1| PREDICTED: general transcription factor IIH subunit 2-like
[Cricetulus griseus]
gi|344248232|gb|EGW04336.1| General transcription factor IIH subunit 2 [Cricetulus griseus]
Length = 395
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 235/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C+G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E + C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYK-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD++IH+ LH CPGC
Sbjct: 353 -KDQHVYVCTVCQNVFCVDCDVFIHDCLHCCPGC 385
>gi|393246283|gb|EJD53792.1| TFIIH basal transcription factor complex, subunit SSL1 [Auricularia
delicata TFB-10046 SS5]
Length = 464
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/408 (40%), Positives = 248/408 (60%), Gaps = 37/408 (9%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYH-----AQYRRRLRGRSLTVATARIQKG 83
+WE SY RSW+A+QEDE+G L+ SA+ H + RR SL + I++
Sbjct: 65 SWEESYT--RSWDAVQEDEAGSLQ----SAVEHLIARGRRRRRVALAASLLAPSDAIRRA 118
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR++ IV+D+S + D RP+R ++ + V FV E+FDQNPL QIG+V ++ G+A
Sbjct: 119 IIRHVIIVLDMSSGMMDRDLRPTRFDLMLEYVREFVTEWFDQNPLGQIGIVGMRAGLAER 178
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
+ D+ GSP+ +K++ KL +GD S+QNAL+L ++ +PS+ REVL+++ +++T
Sbjct: 179 VCDMSGSPQDVLKSISERHKLEPTGDPSLQNALELSRASMSHLPSHSSREVLMIFGSITT 238
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHA 261
DPG+I +T+ C E KIR S++ L+AEM IC+ LC+++GG + VAL+E H K+++ E
Sbjct: 239 VDPGNIHDTLAACLEDKIRISIVALAAEMRICRELCEKSGGVFGVALNEGHFKDVMFELI 298
Query: 262 PPPP--------AIAEFAIASLIKMGFPQRAGEGSI-SICSCHKEVKIGVGYTCPRCKAR 312
PPP A A L+ M FP R E S ++C CH E+K G+ CPRC AR
Sbjct: 299 PPPAQRAAAKAAAGGGGTGADLLLMAFPVRLPESSAPTLCVCHLELK-SEGFLCPRCFAR 357
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
VC++PT+C +CG+ +VSSPHLARSYHHLFP+ + TP + + +TC GC +
Sbjct: 358 VCDVPTDCDVCGIMIVSSPHLARSYHHLFPVKAY---TPVMTLEGEQQTSATCHGCSMAF 414
Query: 373 -----------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409
A G CP+C+ FC ECDI++H+ LH CPG
Sbjct: 415 QPHKAAASAGATAEGVSPLGRYRCPECQNDFCNECDIFVHDVLHVCPG 462
>gi|336371442|gb|EGN99781.1| hypothetical protein SERLA73DRAFT_179993 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384207|gb|EGO25355.1| hypothetical protein SERLADRAFT_465378 [Serpula lacrymans var.
lacrymans S7.9]
Length = 450
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/402 (39%), Positives = 245/402 (60%), Gaps = 32/402 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE SY RSW+ +QEDE+G L+ I + R L A I++ +IR+L
Sbjct: 59 TWEASYT--RSWDTVQEDEAGSLQGAVEDWIARGRRR------RLLAPAAAIRRTIIRHL 110
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++DLS + + D RP+R + + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 111 ILLLDLSTSMMDRDMRPTRFDLTLEYAREFITEWFDQNPLGQIGVVGMRAGIGERIGEMS 170
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ +K++ + L +G+ S+QNA+D+ ++ +P++ RE+L+++ +L+TCDPG+
Sbjct: 171 GNPQDVLKSIADRHRLEPTGEPSLQNAVDMARSSMSHLPTHSSREILVIFGSLTTCDPGN 230
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP- 265
I +T+ C ++KIR SV+ L+AEM IC+ LC +TGG + VAL+E H K+L+ E PPP
Sbjct: 231 IHDTLDACVKNKIRISVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELVPPPAQ 290
Query: 266 --------AIAEFAIASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVCEL 316
+ A A L+ MGFP R + S S+C CH E+K G+ CPRC A+VC++
Sbjct: 291 RAMTRAAGSGATNPAADLMMMGFPTRLPDTSPASLCVCHSEMK-SEGFLCPRCMAKVCDV 349
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ----SL 372
PT+C ICGL +VSSPHLARSYHHLFP+ P+D L D + + C C + +
Sbjct: 350 PTDCDICGLMIVSSPHLARSYHHLFPVKPYDAI--GSLADTPDAGLA-CHACARIFPTTA 406
Query: 373 LASGNKAGLC----VACPKCKKHFCLECDIYIHESLHNCPGC 410
L S + G+ CP+C FC +CD+++H+ +H CPGC
Sbjct: 407 LTSTSTEGMSPLNRYRCPECHNDFCGDCDVFVHDVVHCCPGC 448
>gi|195592457|ref|XP_002085951.1| GD15058 [Drosophila simulans]
gi|194197960|gb|EDX11536.1| GD15058 [Drosophila simulans]
Length = 438
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 161/416 (38%), Positives = 251/416 (60%), Gaps = 31/416 (7%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE+E+ WE Y +++WEA+++DE G L I A+ +R+ +
Sbjct: 3 DDEQEDQKE--YRWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQ------K 52
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +
Sbjct: 53 TKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIAL 112
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A +T+L G+ H+KAL + + + + S+QN LDL L +PS+ RE++I
Sbjct: 113 KAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVI 172
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ +L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q+T GT+ LD++H +
Sbjct: 173 IMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFR 232
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKIGVG 303
+ ++ PPPA A+ SLI+MGFP E +S+C CH E G
Sbjct: 233 DQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTG 291
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD----EATPSRLNDLHN 359
+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+ EA P+ +D +
Sbjct: 292 HHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDFTS 351
Query: 360 ISRSTCFGCQQSLLASGNKAG--LCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
R C+GC ++L +K + C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 352 DVRE-CYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|296422371|ref|XP_002840734.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636957|emb|CAZ84925.1| unnamed protein product [Tuber melanosporum]
Length = 469
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 38/412 (9%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
GG + ER RSW+ + E E G L + + +R L+ T +Q+G+
Sbjct: 51 GGAQKRERWEDIKRSWDNVVEGEDGSLSSTVAGLLEAGKRKRLLKD------TTPLQRGI 104
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR+L +++DLS A E DFRP+R ++ + FVRE+F+QNP+SQ+G++ ++DG+A +
Sbjct: 105 IRHLILILDLSSAMMEKDFRPTRYLLSLRYACDFVREYFEQNPISQLGVLGMRDGLAVRI 164
Query: 145 TDLGGSPESHIKALMGKLGC---SGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
+DL G+P HI+A+ GKL G S+QNAL++ L PS+G REV+I++ AL +
Sbjct: 165 SDLSGNPVDHIEAI-GKLRLDEGKGAPSLQNALEMSRAALFHAPSHGTREVVIVFGALLS 223
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI E KIR SV+GLSA++ +C+ LC+ T G Y VALD+ H +EL+
Sbjct: 224 SDPGDIHQTISHLVEDKIRVSVVGLSAQVAVCRELCKRTNAGDEGVYGVALDDKHFRELL 283
Query: 258 LEHA-PPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCEL 316
L+ PP A+ + +SL+ MGFP R E + S+C+CH + G GY C RC +VC L
Sbjct: 284 LDTTIPPVTRSAKMSASSLLMMGFPSRMVEKTASLCACHSTLTKG-GYLCSRCSTKVCAL 342
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST-CFGCQ------ 369
P EC CGL L+ S HLARSYHHLFP+ + E S+ST C+ CQ
Sbjct: 343 PMECPACGLTLILSTHLARSYHHLFPLKNWVEVP------WKAASKSTHCYACQIPFPHP 396
Query: 370 ---------QSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ A+G AC C HFC++CD++ HE+L+NCP C+S
Sbjct: 397 PAKPEELSAPAKTATGTSVSSRYACTICHNHFCIDCDVFCHETLYNCPACQS 448
>gi|21356299|ref|NP_649427.1| Ssl1, isoform A [Drosophila melanogaster]
gi|442634242|ref|NP_001262227.1| Ssl1, isoform B [Drosophila melanogaster]
gi|10726963|gb|AAF51879.2| Ssl1, isoform A [Drosophila melanogaster]
gi|15010516|gb|AAK77306.1| GH08526p [Drosophila melanogaster]
gi|220945098|gb|ACL85092.1| Ssl1-PA [synthetic construct]
gi|220952514|gb|ACL88800.1| Ssl1-PA [synthetic construct]
gi|440216208|gb|AGB94920.1| Ssl1, isoform B [Drosophila melanogaster]
Length = 438
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 161/416 (38%), Positives = 252/416 (60%), Gaps = 31/416 (7%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE+E+ WE Y +++WEA+++DE G L I A+ +R+ +
Sbjct: 3 DDEQEDQKE--YRWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQ------K 52
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
+ + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +
Sbjct: 53 SKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIAL 112
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A +T+L G+ H+KAL + + + + S+QN LDL L +PS+ RE++I
Sbjct: 113 KAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVI 172
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ +L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q+T GT+ LD++H +
Sbjct: 173 IMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFR 232
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKIGVG 303
+ ++ PPPA A+ SLI+MGFP E +S+C CH E G
Sbjct: 233 DQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTG 291
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD----EATPSRLNDLHN 359
+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+ EA P+ +DL +
Sbjct: 292 HHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTS 351
Query: 360 ISRSTCFGCQQSLLASGNKAG--LCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
R C+GC ++L +K + C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 352 DVRE-CYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|110739908|dbj|BAF01859.1| putative transcription factor [Arabidopsis thaliana]
Length = 196
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/195 (75%), Positives = 161/195 (82%), Gaps = 1/195 (0%)
Query: 230 MFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSI 289
MFICKHLCQETGG YSVA+DE H K+L+LEHAPPPPAIAEFAIA+LIKMGFPQRA EGS+
Sbjct: 1 MFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSM 60
Query: 290 SICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEA 349
+ICSCHKEVKIG GY CPRCKARVC+LPTEC ICGL LVSSPHLARSYHHLFPIAPFDE
Sbjct: 61 AICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEV 120
Query: 350 TP-SRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCP 408
S LND +CFGCQQSL+ +GNK CV C KCK +FCL+CDIYIHESLHNCP
Sbjct: 121 PALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCP 180
Query: 409 GCESLRQSNPVVANE 423
GCES+ + V E
Sbjct: 181 GCESIHRPKSVSLME 195
>gi|336272171|ref|XP_003350843.1| hypothetical protein SMAC_02512 [Sordaria macrospora k-hell]
gi|380095007|emb|CCC07509.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 466
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 180/447 (40%), Positives = 247/447 (55%), Gaps = 52/447 (11%)
Query: 10 NGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLR 69
+ + E D+E NG A RS SWE ++ L D S + A+ R +
Sbjct: 3 DSDGEYASDDELKRNGKRTADGRSKQTKASWEDVKRSWDTVLETAD-SGLSIAEIREAEK 61
Query: 70 GRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
R L T +Q+G+IR+L +V+D+S A A+ D P+R VV FVRE+F+QNP+S
Sbjct: 62 RRRLLRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPIS 121
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKALMG---KLGCSGDSSIQNALDLVHGLLNQIPS 186
Q+G+V ++DG+A ++DL G+P HI+ LM + G+SS+QNAL + G L Q PS
Sbjct: 122 QLGIVGMRDGIAVRISDLSGNPAEHIEKLMQWSEQQDPQGNSSLQNALQMCRGALYQTPS 181
Query: 187 YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG---GT 243
+ REVLI+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G
Sbjct: 182 HATREVLIIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICTELCKRTNNHDGN 241
Query: 244 YSVALDESHSKELILEHAPPPPA-IAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKI 300
YSVA+DE H KEL PP E ASL+ MGFP R A + +S C+CH +
Sbjct: 242 YSVAIDEVHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSYCACHAK-PT 300
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNI 360
GYTCPRC +VC LP +C IC L L+ S HLARSYHHLFP+ F E S+
Sbjct: 301 REGYTCPRCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEVPWSQ------A 354
Query: 361 SRST-CFGC--------QQSLLAS----GNKAGLC----------------------VAC 385
SRST C+ C + ++ A+ G +AG AC
Sbjct: 355 SRSTACYSCLSPFPTGPRDTVAAAPAVLGGRAGKGGKQDSDPKNPKPELKGVSESGRYAC 414
Query: 386 PKCKKHFCLECDIYIHESLHNCPGCES 412
C HFC++CD++ HE++HNCPGC+S
Sbjct: 415 QVCGNHFCIDCDVFAHETIHNCPGCQS 441
>gi|366992932|ref|XP_003676231.1| hypothetical protein NCAS_0D02890 [Naumovozyma castellii CBS 4309]
gi|342302097|emb|CCC69870.1| hypothetical protein NCAS_0D02890 [Naumovozyma castellii CBS 4309]
Length = 485
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 245/427 (57%), Gaps = 31/427 (7%)
Query: 2 KNSERSRL-NGEAEEEDDEEENL---NGGLEAWERSYADDRSWEALQEDESGFLRPIDNS 57
+N+ R RL + ++ +NL NGG AWE RSW+ + DE + + S
Sbjct: 69 RNASRRRLSHNRKKKAASGNKNLLGANGGY-AWEDEIK--RSWDLVTVDEENDMASLVAS 125
Query: 58 AIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEA 117
I + R++ + + Q+G+IR L + +D S A E D RP+R ++ +
Sbjct: 126 II---EARKKRTAKKIVTP---YQRGIIRTLILTLDCSEAMVEKDLRPTRHAMMIQYAID 179
Query: 118 FVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALD 175
F+ EFFDQNP+SQIG+V +++G+A+ ++ + G+P+ HI AL + K +G+ S+QNAL+
Sbjct: 180 FIHEFFDQNPISQIGIVIMRNGLAHLVSQVSGNPQDHIDALKAIRKQEPAGNPSLQNALE 239
Query: 176 LVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKH 235
+ GLL +P++ REVLI++ +LS+ DPGDI +TI + KIR VIGLSA++ ICK
Sbjct: 240 MARGLLLPVPAHCTREVLIIFGSLSSTDPGDIHQTINSLVQEKIRVKVIGLSAQVAICKE 299
Query: 236 LCQETG----GTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISI 291
LC+ T Y + LDE+H KEL E P P +L+KMGFP R E + S
Sbjct: 300 LCKATNYGDDSFYKILLDETHFKELFDEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPSF 359
Query: 292 CSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATP 351
C+CH ++ G GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F E
Sbjct: 360 CACHSKLVYG-GYFCPSCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFVEVPA 418
Query: 352 SRLNDLHNISRSTCFGCQQSL-LASGNKAGLCVA-----CPKCKKHFCLECDIYIHESLH 405
+ N CF CQ + K G + C CKK FC++CD++IHE LH
Sbjct: 419 TETFPTEN-----CFSCQLVFPILKNQKTGKLLTSSRYRCDSCKKDFCIDCDVFIHEILH 473
Query: 406 NCPGCES 412
NCPGCES
Sbjct: 474 NCPGCES 480
>gi|254566501|ref|XP_002490361.1| Component of the core form of RNA polymerase transcription factor
TFIIH [Komagataella pastoris GS115]
gi|238030157|emb|CAY68080.1| Component of the core form of RNA polymerase transcription factor
TFIIH [Komagataella pastoris GS115]
gi|328350755|emb|CCA37155.1| Suppressor of stem-loop protein 1 [Komagataella pastoris CBS 7435]
Length = 447
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/412 (40%), Positives = 237/412 (57%), Gaps = 41/412 (9%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG +WE Y RSW+ +QEDE+G L I + I A +R L+ Q+G
Sbjct: 50 NGGY-SWEDEY--HRSWDIVQEDEAGSLEGI-VTGIMEAHKKRFLKN------VTPFQRG 99
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR + +VID S+ +E D RP+R + FV FFDQNP+SQ+G+V +++G+A
Sbjct: 100 IIRSMVLVIDFSKVMSEKDLRPNRAALTISNAIEFVNNFFDQNPISQLGIVLMRNGIATL 159
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++++ G+P +H++AL + +L +GD S+QNA ++ GLL PS+ RE+L+++ AL T
Sbjct: 160 VSEVSGNPNNHVEALRSIRRLEPTGDPSLQNAFEMARGLLLHTPSHSTREILMIFGALFT 219
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI TI + KIR +IGL+A++ ICK +C+ T Y+V L+E H K+L+
Sbjct: 220 SDPGDIHTTIDSLVKEKIRVKIIGLTAQVAICKEICRRTNYGDDTLYAVILNEGHFKDLL 279
Query: 258 LEHAPP----PPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARV 313
L+ P A E +LIK GFP R E S C+CH ++ G GY CP CK++V
Sbjct: 280 LDAVTPLAISKSAQVEMRGFTLIKAGFPTRISEAIPSFCACHSKLIHG-GYICPGCKSKV 338
Query: 314 CELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC----- 368
C LPT C C L L+ S HLARSYHHLFP+ F E + + + CF C
Sbjct: 339 CMLPTVCPCCNLMLILSTHLARSYHHLFPLKLFQEVPLAE-----SYISTNCFSCLTEFP 393
Query: 369 ----QQSLLASGNKA------GLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ S N+A CP C KHFC++CD+++H+ LHNCPGC
Sbjct: 394 QGMSESERSNSDNRAKKEFHTSSRYQCPDCNKHFCVDCDVFVHDVLHNCPGC 445
>gi|402224004|gb|EJU04067.1| TFIIH basal transcription factor complex subunit SSL1 [Dacryopinax
sp. DJM-731 SS1]
Length = 440
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/406 (38%), Positives = 242/406 (59%), Gaps = 33/406 (8%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
G AWE SY RSW+ +QEDE+G L+ +A+ R + R + + A I++ +I
Sbjct: 46 GAYAWEASYK--RSWDTVQEDEAGSLQ----AAVQDLVARSKRRRCACSWGDAPIRRTII 99
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R++ ++DLS A + D RPSR + FV E+FDQNPL Q+G+V +++GV +
Sbjct: 100 RHMMFLVDLSTAMMDRDMRPSRFDLTLSYAREFVSEWFDQNPLGQMGVVGMRNGVGERIG 159
Query: 146 DLGGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
D+ G+P+ +K + K L +G+ S+QN++++ +N +P++ RE+LI++ +L+T D
Sbjct: 160 DMSGNPQDVLKCFLDKTLLEPAGEPSLQNSIEMARASMNHLPTHSSREILIIFGSLTTVD 219
Query: 204 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPP 263
PG++++T+ C +IR S++ LSAEM +C+ +C+ TGG + VAL+E H K+L+ E PP
Sbjct: 220 PGNLLDTVDACVRDQIRISIVALSAEMKVCRDMCERTGGVFGVALNEGHYKDLLFELVPP 279
Query: 264 P---------PAIAEFAIASLIKMGFPQR-AGEGSISICSCHKEVKIGVGYTCPRCKARV 313
P A A + L++MGFP R S+C CH ++ GY CPRC ++V
Sbjct: 280 PADKSPVSRLAAQAGEGQSELMQMGFPTRLPATAPPSLCVCHSRLR-SEGYICPRCNSKV 338
Query: 314 CELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLL 373
C++PT+C ICGL +VSSPHLARSYHHLFP AP +A + +L S C C
Sbjct: 339 CDVPTDCDICGLMIVSSPHLARSYHHLFP-APAYKA----VLELDGKEASACHACSLPFP 393
Query: 374 ASG-----NKAGLC----VACPKCKKHFCLECDIYIHESLHNCPGC 410
+ + G+ CPKCK F ECD+++H+ LH CPGC
Sbjct: 394 TTARAPLQTEEGMSPHGRYRCPKCKHDFDAECDLFVHDVLHVCPGC 439
>gi|328858838|gb|EGG07949.1| hypothetical protein MELLADRAFT_35246 [Melampsora larici-populina
98AG31]
Length = 455
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 244/414 (58%), Gaps = 42/414 (10%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
+G AWE Y RSW+ ++ED+SG L N + A R+R+ T IQ+G
Sbjct: 55 DGQGYAWEDEYK--RSWDNVREDDSGSLEGAVNQLM--ANKRKRI-----IRDTTSIQRG 105
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR+L +VIDLS A + D RP+R+ + + FV EFFDQNP+SQ+ + KD +A
Sbjct: 106 IIRHLCLVIDLSLAMTDRDLRPNRLEMSLNYAQEFVTEFFDQNPISQMCIFITKDAIAER 165
Query: 144 LTDLGGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
L+ L G+P H KAL K L SG+ S+QNAL++ L +P +G +E L++ +L+T
Sbjct: 166 LSPLSGNPVDHHKALSNKRKLEPSGEPSLQNALEMARATLAHLPPHGSKETLVIMGSLTT 225
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHA 261
CDP DI +TI+K ++ ++R S++GLSAE+ ICK +C++T G Y V ++E+H KEL+ E
Sbjct: 226 CDPEDIHKTIEKLEKDRMRVSIVGLSAEINICKEICRKTKGKYGVIMNETHFKELLFESI 285
Query: 262 PPPPAIAEFAI-----------ASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCK 310
PPPP++ + + L++MGFP + S+C+CH ++K G+ CPRC
Sbjct: 286 PPPPSLVNSSTSQSNRSTNTTSSDLMQMGFPTKLSNPIPSLCACHSKLK-SSGFICPRCG 344
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNIS-RSTCFGCQ 369
+++C++PT+C ICGL +VSSPHLARSY HLFP+A + E ++ H I ++C+GC
Sbjct: 345 SKLCDVPTDCLICGLTVVSSPHLARSYRHLFPVANWKEID----SENHEIECPTSCYGCS 400
Query: 370 QSLLASGNKAGLC-------------VACPKCKKHFCLECDIYIHESLHNCPGC 410
Q S C +CK FC CD++ HE L CPGC
Sbjct: 401 QVFSTSSTTTTTTTTTTTTITNQSSKFMCNRCKHIFCSTCDLF-HEQLGLCPGC 453
>gi|195127781|ref|XP_002008346.1| GI13436 [Drosophila mojavensis]
gi|193919955|gb|EDW18822.1| GI13436 [Drosophila mojavensis]
Length = 461
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/417 (38%), Positives = 250/417 (59%), Gaps = 36/417 (8%)
Query: 14 EEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSL 73
+++DD++E WE Y +++WEA++ED+ G L I A+ +R+
Sbjct: 4 DDQDDQKEY------RWETGY--EKTWEAIKEDDDGLLDGAIADIIQKAKRKRQAD---- 51
Query: 74 TVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGL 133
T + + G++R+++IV+D S + + D +P+R++ K +E F+ EFFDQNP+SQ+G+
Sbjct: 52 --KTKQNRLGMMRHMFIVLDCSESMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGI 109
Query: 134 VTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+ +K A +T+L G+ H+KAL + + + + S+QN LDL L +PS+ RE
Sbjct: 110 IALKAKRAEKITELTGTSRVHLKALASLANVPLTSEPSLQNGLDLALKTLKVVPSHASRE 169
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
++I+ +L+TCDP DI TI + K +IRCSVI LSAE+ IC++L Q+T GT+ LD++
Sbjct: 170 IVIIMGSLTTCDPVDINVTIDELKRERIRCSVISLSAEIHICRYLTQQTMGTFGAVLDDA 229
Query: 252 HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKI 300
H ++ +L PPPA A+ SLI+MGFP E +S+C CH E
Sbjct: 230 HYRDQLLSQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDAPLSMCMCHIENLDEPSELS 288
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT----PSRLND 356
G+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+E + P D
Sbjct: 289 TTGHHCPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELSYDMVPPASPD 348
Query: 357 LHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
++ + C+ C + L +K+ C C + FC++CDI+IHE+LH C GC ++
Sbjct: 349 CGSLRK--CYACIKVLNPVTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|195348862|ref|XP_002040966.1| GM22477 [Drosophila sechellia]
gi|194122476|gb|EDW44519.1| GM22477 [Drosophila sechellia]
Length = 438
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/416 (38%), Positives = 251/416 (60%), Gaps = 31/416 (7%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE+E+ WE Y +++WEA+++DE G L I A+ +R+ +
Sbjct: 3 DDEQEDQKE--YRWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQ------K 52
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +
Sbjct: 53 TKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIAL 112
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A +T+L G+ H+KAL + + + + S+QN LDL L +PS+ RE++I
Sbjct: 113 KAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVI 172
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ +L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q+T GT+ LD++H +
Sbjct: 173 IMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFR 232
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKIGVG 303
+ ++ PPPA A+ SLI+MGFP E +S+C CH E G
Sbjct: 233 DQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTG 291
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD----EATPSRLNDLHN 359
+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+ EA P+ ++ +
Sbjct: 292 HHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSEFTS 351
Query: 360 ISRSTCFGCQQSLLASGNKAG--LCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
R C+GC ++L +K + C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 352 DVRE-CYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|367002171|ref|XP_003685820.1| hypothetical protein TPHA_0E02960 [Tetrapisispora phaffii CBS 4417]
gi|357524119|emb|CCE63386.1| hypothetical protein TPHA_0E02960 [Tetrapisispora phaffii CBS 4417]
Length = 490
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 238/408 (58%), Gaps = 27/408 (6%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
+D+ +GG +WE RSW+ + D+ + + S + + R++ RS
Sbjct: 94 NDQLAGTSGGY-SWEDELK--RSWDLVTVDDENDMASLVASIV---EARKK---RSAQKV 144
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
Q+G+IR L +++D S +E D RP+R + + F++EFFD+NP+SQ+G+V +
Sbjct: 145 VTPYQRGIIRSLILILDCSEVMSEKDLRPNRNAMSIQYAIDFIQEFFDENPISQLGIVIM 204
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
++G+AN L+ +GG+P++HI AL + + G+ S+QNAL++ GLL +PS+ REVLI
Sbjct: 205 RNGLANLLSPIGGNPQAHIDALKSIRREEPKGNPSLQNALEMARGLLLPVPSHCTREVLI 264
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDE 250
++ LS+ DPGDI +TIQ KIR VIGLSA++ ICK LC+ T Y V LDE
Sbjct: 265 VFGGLSSTDPGDIHQTIQSLVNEKIRVKVIGLSAQVAICKELCKATNYDDESFYRVILDE 324
Query: 251 SHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCK 310
H KEL E P P +L+KMGFP R E + + C+CH ++ G GY CP C
Sbjct: 325 VHFKELYDEAVTPLPVNKINKAFTLVKMGFPTRVFEENPTFCACHSKLVYG-GYFCPNCN 383
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ 370
++VC LPT C C L L+ S HLARSYHHL P+ F E S + N CF CQ
Sbjct: 384 SKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFSEVPTSETFETEN-----CFSCQM 438
Query: 371 SLLASGN-KAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+ + N K G + C C+ FC++CD++IHE LHNCPGCES
Sbjct: 439 TFPSLRNKKTGELLTSSRYRCQDCENDFCIDCDLFIHEILHNCPGCES 486
>gi|255711256|ref|XP_002551911.1| KLTH0B02794p [Lachancea thermotolerans]
gi|238933289|emb|CAR21473.1| KLTH0B02794p [Lachancea thermotolerans CBS 6340]
Length = 470
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 235/401 (58%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + +S I ++R ++LT Q+G
Sbjct: 80 NGGY-AWEEDIQ--RSWDLVKVDDEGNMAALVSSII--EARKKRASNKNLT----PFQRG 130
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR + +V+D S A E D RP+R + + FV EFFDQNP+SQIG+V +++ +A
Sbjct: 131 IIRTMVLVLDCSDAMMEKDLRPNRYAMTIQYAINFVHEFFDQNPISQIGIVCMRNDLAQL 190
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+SS+QNAL++ GLL +P++ REVLI++ ALS+
Sbjct: 191 VSQVSGNPQDHIDALKAIRKQEPKGNSSLQNALEMARGLLLHVPAHCTREVLIIFGALSS 250
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET----GGTYSVALDESHSKELI 257
DPGDI +TI + +IR VIGLSA++ ICK LC++T Y V L+E H K+L
Sbjct: 251 TDPGDIHQTIASLVQERIRVRVIGLSAQVAICKELCKQTNYGDNSFYGVILNEVHFKDLF 310
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E S C+CH ++ G GY CP CK++VC LP
Sbjct: 311 AEAVTPLPVNKINKGFTLVKMGFPTRVYEDMPSFCTCHSKLMYG-GYFCPNCKSKVCSLP 369
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL--LAS 375
T C C L L+ S HLARSYHHL P+ F E + TC+ CQ+ L +
Sbjct: 370 TVCPCCDLMLILSTHLARSYHHLMPLKTFQEVDVAE-----TFPTDTCYSCQKRFPRLKN 424
Query: 376 GNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
L + C C + FC++CD++IHE LHNCPGCES
Sbjct: 425 QKTQELLTSSRYRCADCHQDFCIDCDVFIHEILHNCPGCES 465
>gi|195496832|ref|XP_002095860.1| GE22646 [Drosophila yakuba]
gi|194181961|gb|EDW95572.1| GE22646 [Drosophila yakuba]
Length = 438
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/403 (38%), Positives = 247/403 (61%), Gaps = 29/403 (7%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WEA+++DE G L I A+ +R+ + T + + G++R+++
Sbjct: 14 WETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQ------KTKQNRLGMMRHMF 65
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +T+L G
Sbjct: 66 LVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGIIALKAKRAEKVTELTG 125
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ H+KAL + + + + S+QN LDL L +PS+ RE++I+ +L+TCDP DI
Sbjct: 126 TSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDI 185
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
TI + K+ IRCSVI LSAE+ + ++L Q+T GT+ LD++H ++ ++ PPPA
Sbjct: 186 NITIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA- 244
Query: 268 AEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKIGVGYTCPRCKARVCEL 316
A+ SLI+MGFP E +S+C CH E G+ CP+C ++ CEL
Sbjct: 245 AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSKYCEL 304
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFD----EATPSRLNDLHNISRSTCFGCQQSL 372
P EC+ CGL LVS+PHLARSYHHLFP+ F+ EA P+ +DL + R C+ C ++L
Sbjct: 305 PVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSGVRE-CYACAKAL 363
Query: 373 LASGNKAG--LCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
S +K + C CK++FC++CDI+IH++LH C GC ++
Sbjct: 364 GQSVDKVADKVVYRCGFCKQYFCVDCDIFIHDTLHACVGCNTI 406
>gi|213402509|ref|XP_002172027.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces japonicus yFS275]
gi|212000074|gb|EEB05734.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces japonicus yFS275]
Length = 422
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 167/419 (39%), Positives = 237/419 (56%), Gaps = 30/419 (7%)
Query: 5 ERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQY 64
ER NG + + +E WE Y RSW+ ++ED G L + I +
Sbjct: 20 ERVSKNGSKQTKSQHKEGY-----TWEGEY--QRSWDIVKEDAEGSLAGVVEGLINAGKR 72
Query: 65 RRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFD 124
+R LR T +Q+G+IR+L +V+DLS A E DFR R+ + K F+ +F+
Sbjct: 73 KRILRD------TTPLQRGIIRHLILVVDLSIAMEERDFRTKRVDLQIKYGTEFIINYFE 126
Query: 125 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQI 184
QNP+SQ+G++ +KDG+A ++D+ G+P+ HI L C G +S+QNAL++ L I
Sbjct: 127 QNPISQLGIIAMKDGIAVKISDIHGNPQDHINKLKKLRECKGMASLQNALEMARASLAHI 186
Query: 185 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG--- 241
S+G REVLI++ +L + DPGDI +TI + I +IGLSAE+ +CK +C+ T
Sbjct: 187 ASHGTREVLIIFGSLLSSDPGDIFQTIDSLVKENISVHIIGLSAEVSVCKEICRRTNNGA 246
Query: 242 -GTYSVALDESHSKELILEHAPPPPAIAEFAI-ASLIKMGFPQRAGEGSISICSCHKEVK 299
Y V L+E+H +EL++E PP ++ I ASL+KMGFP + E S+CSCH
Sbjct: 247 QNAYGVILNENHLEELLMEKTIPPATHSDEGIPASLVKMGFPSKVIEPFPSLCSCHSVAS 306
Query: 300 IGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHN 359
G G+ CPRCK +VC LP EC C L L+ S HLARSYHHLFP+ + E S
Sbjct: 307 RG-GFHCPRCKCKVCTLPIECPGCSLILILSTHLARSYHHLFPLKNWREIPWSE-----K 360
Query: 360 ISRSTCFGCQQSLLAS------GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ + CF CQ + N + ACP C HFC+ECD++ HE LH C GC+S
Sbjct: 361 PTSTYCFACQAPFPMTPQAKEDQNASSSRYACPSCGHHFCIECDVFAHEQLHECFGCQS 419
>gi|392569356|gb|EIW62529.1| TFIIH basal transcription factor complex subunit SSL1 [Trametes
versicolor FP-101664 SS1]
Length = 452
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 156/404 (38%), Positives = 245/404 (60%), Gaps = 34/404 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE +Y RSW+ +QEDE+G +R I + R L A I++ +IR L
Sbjct: 59 AWEATYV--RSWDTVQEDEAGSIRGSVQDLIARGRRR------RLLAPAAAIRRTIIRQL 110
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+DLS A + D RP+R ++ + FV E+FDQNPL QIG+ ++ G+ + ++
Sbjct: 111 VLVLDLSAAMLDRDMRPTRFDLMLQYAREFVTEWFDQNPLGQIGIAGMRGGLGERIGEMS 170
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ +KA+ +L +G+ S+QNA+++ ++ +P++ RE+L+++ +L+TCDPG+
Sbjct: 171 GNPQDVLKAISERHRLEPNGEPSLQNAIEMARSSMSHLPTHSSREILVIFGSLTTCDPGN 230
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP- 265
I +T+ +C + +IR S++ L+AEM IC+ LC +TGG +SV ++E H K+L+ E PPP
Sbjct: 231 IHDTMDECVKDRIRISIVALAAEMKICRDLCDKTGGQFSVVMNEGHFKDLLFELIPPPAQ 290
Query: 266 --------AIAEFAIASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVCEL 316
+ A L+ MGFP R + S S+C CH ++K G+ CPRC A+VC++
Sbjct: 291 RAVARTGSGVTANPAADLMIMGFPMRLPDTSPPSLCVCHSQMK-SEGFLCPRCLAKVCDV 349
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ------Q 370
PT+C ICGL +VSSPHLARSYHHLFP+ + + L D N S+ C GC
Sbjct: 350 PTDCDICGLMIVSSPHLARSYHHLFPVKAYQAV--NTLEDTLNPSKQ-CHGCSVAFRGTP 406
Query: 371 SLLASGNKAGLC----VACPKCKKHFCLECDIYIHESLHNCPGC 410
S++A + G+ CP+C FC +CD+++H+ +H CPGC
Sbjct: 407 SVVAGASGEGMSPFGRYRCPECHNDFCTDCDVFVHDVVHCCPGC 450
>gi|452986441|gb|EME86197.1| hypothetical protein MYCFIDRAFT_39800 [Pseudocercospora fijiensis
CIRAD86]
Length = 465
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/416 (40%), Positives = 238/416 (57%), Gaps = 46/416 (11%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE +R WE LQE G + + I A R+RL T +Q+G+IR+
Sbjct: 44 WESGV--NRGWE-LQESADGGIEDV-LGGIEEAGKRKRL-----LKDTTPLQRGIIRHTL 94
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
++IDLS A AE D RP+R ++ AF+RE+F+QNP+SQ+G++ ++DGVA ++D+ G
Sbjct: 95 LIIDLSAAMAEKDLRPTRHLLTISNTVAFIREYFEQNPISQLGILGMRDGVALRVSDMSG 154
Query: 150 SPESHIKALMGKLGCS--GDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI A+ G G +S+QNALD+ L PS+G REV+I+ ALS+ DPGDI
Sbjct: 155 NPNVHIAAVRALRGTDPKGSASLQNALDMARAALYHTPSHGTREVVIILGALSSSDPGDI 214
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQET--GGT--YSVALDESHSKELILEHAPP 263
+TI+ C + KIR ++IGL+A+M IC + ++T G T Y+VA+DE H +EL + P
Sbjct: 215 HDTIKACIKDKIRVNIIGLAAQMQICAEIARKTNQGATNCYNVAVDEVHYRELFMGITTP 274
Query: 264 PPAIA------EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
P A + A+L+ MGFP R EG ++C+CH + G GY C RCKA+VC LP
Sbjct: 275 PVVRATDTEAQKRNQAALLMMGFPSRIVEGKATLCACHGNLTRG-GYLCSRCKAKVCNLP 333
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL----- 372
C C L L+ S HLARSYHHLFP+ +DE + R + +I+ C+GC +
Sbjct: 334 ATCPTCDLTLILSTHLARSYHHLFPLQNWDEVSWERAQEKGSIA---CYGCHSAFPSLWS 390
Query: 373 ----------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
A G C C+ HFC++CD++ HE HNCPGC+S
Sbjct: 391 STDETNGASHTRTRPKRAEGASESSRYECRTCQNHFCIDCDVFCHEVAHNCPGCQS 446
>gi|395517618|ref|XP_003762972.1| PREDICTED: general transcription factor IIH subunit 2 [Sarcophilus
harrisii]
Length = 395
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 232/394 (58%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ HI +L + C G+ S+ N+L L L +P + REVLI++ +L+TCDP +I
Sbjct: 123 NARKHITSLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFGSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E + N C GC L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLEAFQEVSLEEYN-----GERFCQGCLGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD++IH+SLH CPGC
Sbjct: 353 -KDQHVYICTVCQNVFCVDCDLFIHDSLHCCPGC 385
>gi|145242846|ref|XP_001393996.1| TFIIH basal transcription factor complex p47 subunit [Aspergillus
niger CBS 513.88]
gi|134078553|emb|CAK40474.1| unnamed protein product [Aspergillus niger]
gi|350640268|gb|EHA28621.1| hypothetical protein ASPNIDRAFT_212323 [Aspergillus niger ATCC
1015]
Length = 457
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 163/440 (37%), Positives = 244/440 (55%), Gaps = 54/440 (12%)
Query: 11 GEAEEEDDEEENLNG-----------------GLEAWERSYADDRSWEALQEDESGFLRP 53
GE E++DE L G G WE S R+WE L E G +
Sbjct: 10 GEISEDEDENNLLPGSRGETTSASRSKRRKHRGGAEWEVS----RTWETLVEGADGTISS 65
Query: 54 IDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAK 113
+ + +R LR T +Q+G+IR+L ++IDLS++ E D RP+R ++ +
Sbjct: 66 TVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILIIDLSQSMTEKDLRPTRYLLSLR 119
Query: 114 QVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQ 171
+ FVREFF+QNP+SQ+G++ +KDG+A ++D+ G+P HI A+ + G S+Q
Sbjct: 120 YAQEFVREFFEQNPISQLGVLGLKDGLAVRVSDMSGNPTEHISAIQSLRDQDPKGLPSLQ 179
Query: 172 NALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 231
N ++ G L PS+G RE+ +++ +L + DPGDI +TI KIR ++GL+A++
Sbjct: 180 NGFEMARGALFHTPSHGTREIFVIFGSLLSSDPGDIHQTITTLINDKIRVGIVGLAAQVA 239
Query: 232 ICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF-AIASLIKMGFPQRAGE 286
IC+ +C +T G TY VAL+E H ++L++ PP ++ + +SL+ MGFP R E
Sbjct: 240 ICREICGKTNGGDDTTYGVALNEQHFRDLVMNVTTPPATYSQKQSTSSLLMMGFPSRTVE 299
Query: 287 GSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPF 346
S+C+CH + G GY C RC ++VC LP EC CGL L+ S HLARSYHHLFP+ +
Sbjct: 300 AYPSLCACHSKPSRG-GYLCSRCNSKVCGLPAECPSCGLTLILSTHLARSYHHLFPLMNW 358
Query: 347 DEATPSRLNDLHNISRSTCFGC----------QQSLLASGNKAGLCVA----CPKCKKHF 392
E + H S CF C +Q G G+ V+ C C+ HF
Sbjct: 359 VEVSWQ-----HASRSSVCFACGISFPSVPPKEQWHTTEGQTKGISVSSRYECTVCRNHF 413
Query: 393 CLECDIYIHESLHNCPGCES 412
C++CD++ HE +HNCPGC+S
Sbjct: 414 CIDCDLFAHEVVHNCPGCQS 433
>gi|194752572|ref|XP_001958595.1| GF11005 [Drosophila ananassae]
gi|190625877|gb|EDV41401.1| GF11005 [Drosophila ananassae]
Length = 422
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 157/412 (38%), Positives = 250/412 (60%), Gaps = 29/412 (7%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
++EN + WE Y +++WEA+++DE G L + AI A+ ++ + + L T
Sbjct: 3 DDENEDQKEYRWETGY--EKTWEAIKDDEDGLL----DGAI--AEIIQKAKRQRLAQKTK 54
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+ + G++R+LY+++D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 55 QNRLGMMRHLYVIVDCSESMSVPDLKPTRLRCTIKLLEQFIEEFFDQNPISQLGIIALKA 114
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
A +T+L G+ H+KAL + + + + S+QN LDL L +PS+ RE++++
Sbjct: 115 KRAEKVTELTGTSRVHLKALESLINVSLTSEPSLQNGLDLALKTLKVVPSHASREIVVIM 174
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKEL 256
+L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q+T GT+ LD++H ++
Sbjct: 175 GSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTLGTFGAVLDDAHFRDQ 234
Query: 257 ILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKIGVGYT 305
++ PPPA A+ SLI+MGFP E +S+C CH E V G+
Sbjct: 235 LMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSVLCTTGHH 293
Query: 306 CPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT----PSRLNDLHNIS 361
CP+C ++ CELP EC+ CGL LVS+PHLARSYHHL P+ F+E T P+ +D +N
Sbjct: 294 CPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLIPVPNFEEVTLDSMPTVSSD-YNGG 352
Query: 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
C+ C + L +K+ C C++ FC++CD +IHE+LH C GC ++
Sbjct: 353 VKECYACAKVLTFVADKS--IFKCGFCQQFFCIDCDAFIHETLHACVGCNTI 402
>gi|401837686|gb|EJT41582.1| SSL1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 462
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 168/422 (39%), Positives = 240/422 (56%), Gaps = 28/422 (6%)
Query: 5 ERSRLNGEAEEEDDEEENLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHA 62
+R R +++ NL G G AWE RSW+ ++ D+ G + + S +
Sbjct: 50 DRDRHGQRKKKKRLSNRNLQGSNGGYAWEDEIK--RSWDLVKVDDEGDMASLVASIV--E 105
Query: 63 QYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREF 122
++R +++T Q+G+IR L + +D S A E D RPSR ++ + FV EF
Sbjct: 106 ARKKRTAKKNITP----YQRGIIRSLILTLDCSEAMLEKDLRPSRHAMIIQYAIDFVHEF 161
Query: 123 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGL 180
FDQNP+SQ+G++ +++G+A ++ + G+P+ HI AL + K G+ S+QNAL++ GL
Sbjct: 162 FDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGL 221
Query: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET 240
L +P++ REVLI++ +LST DPGDI +TI KIR V+GLSA++ ICK LC+ T
Sbjct: 222 LLPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKAT 281
Query: 241 G----GTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHK 296
Y + LDE+H KEL E P P +L+KMGFP R E + + CSCH
Sbjct: 282 NYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHS 341
Query: 297 EVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLND 356
++ G GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F E +
Sbjct: 342 KLVYG-GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTTE--- 397
Query: 357 LHNISRSTCFGCQQSL-LASGNKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGC 410
CF CQ + +K G + C CK+ FC++CDI+IHE LHNCPGC
Sbjct: 398 --TFRSEDCFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDIFIHEILHNCPGC 455
Query: 411 ES 412
ES
Sbjct: 456 ES 457
>gi|346464883|gb|AEO32286.1| hypothetical protein [Amblyomma maculatum]
Length = 448
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 30/370 (8%)
Query: 13 AEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS 72
A+EED G WE Y +R+WEA+QEDESG L+P ++ A+ ++ L
Sbjct: 2 ADEED-------GKGYRWETEY--ERTWEAIQEDESGLLQPSVLDFVHRAKRKQML---- 48
Query: 73 LTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIG 132
A ++ G++R+LYIV+D S A AE D +P+R++ K +E FV EFFDQNP+S +G
Sbjct: 49 ---AKKNVRLGMMRHLYIVVDFSEAMAEPDLKPTRLICTLKMLELFVEEFFDQNPISNVG 105
Query: 133 LVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHR 190
+++ + A L +L G+ ++AL SG+ S+QN+L+L +L +P + R
Sbjct: 106 VISTCNKRAQKLCELAGNTGKVVEALKSCKTQVPSGEPSLQNSLELAAEVLRHLPVHTSR 165
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDE 250
EVLI+ +L+TCDPG+I TI+ ++ IRCS++GL+AE+++C L + TGGTY+V LDE
Sbjct: 166 EVLIIMGSLTTCDPGNIQTTIETMRKCNIRCSIVGLAAEVYVCCRLTKTTGGTYNVILDE 225
Query: 251 SHSKELILEHAPPPPAIAEFAIASLIKMGFP--QRAGEGSISICSCHKEVKIGV------ 302
+H K+++ +HA PPP A +SLI+MGFP + EG S+C CH + +
Sbjct: 226 NHFKDILFQHAIPPPVTGN-AESSLIRMGFPYHRTETEGKPSLCFCHLDSQNPSDGLSKG 284
Query: 303 GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISR 362
GY CP+C + C LP EC++CGL LVS+PHLARSYHHLF + PFDE P + L +
Sbjct: 285 GYFCPQCNGKYCTLPVECKVCGLTLVSAPHLARSYHHLFALEPFDEVPP---DTLPADTP 341
Query: 363 STCFGCQQSL 372
TCF CQ S+
Sbjct: 342 VTCFACQVSI 351
>gi|121717593|ref|XP_001276096.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus clavatus NRRL 1]
gi|119404294|gb|EAW14670.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus clavatus NRRL 1]
Length = 456
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 241/429 (56%), Gaps = 48/429 (11%)
Query: 10 NGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLR 69
+G A + GG E WE S R+WE L E G + + + +R LR
Sbjct: 25 HGTAHASRSKRRKQRGGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLR 79
Query: 70 GRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
T +Q+G+IR+L +++DLS++ E D RP+R ++ + + FVREFF+QNP+S
Sbjct: 80 D------TTPLQRGIIRHLVLILDLSQSMMEKDLRPTRYLLTLRYAQEFVREFFEQNPIS 133
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSY 187
Q+G++ ++DG+A ++D+ G+P HI A+ + G S+QN L + G L PS+
Sbjct: 134 QLGVLGLRDGLAIRISDMSGNPTEHISAIQALRDHDAKGLPSLQNGLGMARGALFHTPSH 193
Query: 188 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----T 243
G REV I++ +L + DPGDI TI KIR ++GL+A++ IC+ LC T G T
Sbjct: 194 GTREVFIVFGSLLSSDPGDIYRTIATLVNDKIRVRIVGLAAQVAICRELCSRTNGGDDTT 253
Query: 244 YSVALDESHSKELILEHAPPPPAIAEF-AIASLIKMGFPQRAGEGSISICSCHKEVKIGV 302
Y VAL+E H +EL+++ PP ++ + +SL+ MGFP R E S+C+CH + G
Sbjct: 254 YGVALNEQHFRELMMDVTTPPVTYSQKQSTSSLLMMGFPSRTVESCPSLCACHSKPSCG- 312
Query: 303 GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI-----APFDEATPSRLNDL 357
GY+C RC ++VC LP EC CGL L+ S HLARSYHHLFP+ P+ +A+ S
Sbjct: 313 GYSCSRCNSKVCGLPAECPSCGLTLILSTHLARSYHHLFPLMNWVEVPWQQASRS----- 367
Query: 358 HNISRSTCFGC----------QQSLLASGNKAGLCVA----CPKCKKHFCLECDIYIHES 403
S CF C Q G+ V+ C CK HFC++CD++ HE
Sbjct: 368 -----SACFACGVYFPAVPPNDQWQTTESQAKGMSVSSRYECTVCKNHFCIDCDLFAHEV 422
Query: 404 LHNCPGCES 412
+HNCPGC+S
Sbjct: 423 VHNCPGCQS 431
>gi|440793605|gb|ELR14784.1| Ssl1like protein [Acanthamoeba castellanii str. Neff]
Length = 360
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/387 (41%), Positives = 226/387 (58%), Gaps = 58/387 (14%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGR---SLTVATARIQKGLI 85
AWER Y +R+WE +QED +G L D + H+Q R R R +++G+
Sbjct: 25 AWERDY--ERTWEVVQEDATGAL---DTHSFLHSQQRLRRAEREQLGGGAGGRVVRRGMQ 79
Query: 86 RYLYIVIDLSRAAAEM-DFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
R++++V+DLS+A + D +PSR+ V K VE+F+RE+F+QNP++Q+G+V ++DG A L
Sbjct: 80 RHVFLVVDLSQAMDDAHDMKPSRLAVTLKIVESFIREYFEQNPIAQLGIVIMRDGAAEKL 139
Query: 145 TDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204
++LGG+P HI L K +P YG RE+++L++ L+TCDP
Sbjct: 140 SELGGNPARHIGVLKDK--------------------AHVPKYGSREIVVLFAGLATCDP 179
Query: 205 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP 264
DI TI K K+ IRCS++GLSAE+ IC+ L + T GTY VAL E H ++L+ H PP
Sbjct: 180 TDIKSTISKLKKDSIRCSIVGLSAEIHICRVLAESTDGTYGVALHEGHYRQLVFAHVSPP 239
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICG 324
PA + +SLI+MGFP R + S CSCHK ++ GY C A+ CELP EC +CG
Sbjct: 240 PAQPQQVASSLIRMGFPTRKRDHFPSFCSCHKSLR-REGY----CGAKCCELPMECPVCG 294
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
L LVSS HLARSYHHLFP+ F + ST G + A
Sbjct: 295 LTLVSSSHLARSYHHLFPLPLFQAGS------------STTSGAE------------VYA 330
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCE 411
CP+C + FC ECD++ H+ LH C GCE
Sbjct: 331 CPRCARSFCYECDVFAHDLLHTCAGCE 357
>gi|410083393|ref|XP_003959274.1| hypothetical protein KAFR_0J00710 [Kazachstania africana CBS 2517]
gi|372465865|emb|CCF60139.1| hypothetical protein KAFR_0J00710 [Kazachstania africana CBS 2517]
Length = 469
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 234/399 (58%), Gaps = 26/399 (6%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
G AWE RSW+ + DE G + + S I ++R RS+T Q+G+I
Sbjct: 80 GGYAWEDEIK--RSWDLVTLDEDGDMVSLVASLI--EARKKRAAKRSVTP----FQRGII 131
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R L + +D S + E D RPSR ++ + FV EFFDQNP+SQIG+V +++G+A ++
Sbjct: 132 RNLILTLDCSESMLEKDLRPSRHAMMIQYAIDFVHEFFDQNPISQIGIVIMRNGLAQLVS 191
Query: 146 DLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
+ G+P+ HI AL + K G+ S+QNAL++ GLL +PS+ REVLI++ +LS+ D
Sbjct: 192 QVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPSHCTREVLIIFGSLSSTD 251
Query: 204 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILE 259
PGD+ +TI +IR VIGLSA++ ICK LC++T Y++ LDE+H KEL E
Sbjct: 252 PGDVHQTINSLVRERIRTRVIGLSAQVAICKELCKQTNYGDESYYNILLDETHFKELFDE 311
Query: 260 HAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTE 319
P P +L+KMGFP R E + + CSCH ++ G GY CP C +++C LPT
Sbjct: 312 AVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLIYG-GYFCPNCHSKICSLPTV 370
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASGNK 378
C C L L+ S HLARSYHHL P+ F E PS C+ CQ+ + +K
Sbjct: 371 CPCCDLMLILSTHLARSYHHLMPLKTFKEV-PSD----ETFKTENCYSCQKKFPILKNHK 425
Query: 379 AGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G + C C++ FC++CD++IHE LHNCPGCE+
Sbjct: 426 TGNLLTSSRYRCSDCQEDFCIDCDLFIHEVLHNCPGCEA 464
>gi|47210864|emb|CAF92597.1| unnamed protein product [Tetraodon nigroviridis]
Length = 395
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 171/397 (43%), Positives = 235/397 (59%), Gaps = 36/397 (9%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ RR L + +++ G++R+LY
Sbjct: 12 WEGGY--ERTWEVLKEDESGSLKASVEEILFQAKKRR------LVQSHGQVRLGMMRHLY 63
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+VID SR+ + D +P+R+ K +E FV E+FDQNP+SQ+G++T K+ A LTDL G
Sbjct: 64 VVIDCSRSMEDQDLKPNRLTSTLKLMEGFVEEYFDQNPISQMGIITTKNKRAEKLTDLAG 123
Query: 150 SPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P+ H AL + C G+ S+ N L L L +P + REVLI+ S+L+TCDPG+I
Sbjct: 124 NPKKHAAALKKAVDSACVGEPSLYNCLSLALQTLRHMPGHTSREVLIILSSLTTCDPGNI 183
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
E IQ K K+R SV+GLSAE+ +C L +ETGG+Y V LDESH KEL++ H PPPA
Sbjct: 184 YELIQTLKSLKVRVSVVGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPPAS 243
Query: 268 AEFAIASLIKM-GFPQRA------GEGSISICSCHKE-------VKIGVGYTCPRCKARV 313
+ SLI+M GFPQ + S H E + +G GY CP+C A+
Sbjct: 244 CS-SECSLIRMAGFPQHTMASLTDQDAKPSFSMAHLEGGGGGPDLSLG-GYFCPQCHAKY 301
Query: 314 CELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLL 373
ELP EC++CGL LV +PHLARS+HHLFP+ F E++ C CQ L
Sbjct: 302 TELPVECKVCGLTLVLAPHLARSFHHLFPLQVFPESSAE-----DPPKDRFCQACQGRL- 355
Query: 374 ASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K CP C FC+ECD++IH+SLH CP C
Sbjct: 356 ----KDKSVFTCPSCHSVFCVECDLFIHDSLHCCPCC 388
>gi|392297981|gb|EIW09080.1| Ssl1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 461
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/410 (40%), Positives = 236/410 (57%), Gaps = 31/410 (7%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + S + ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIV--EARKKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFRSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVA 421
+K G + C CK+ FC++CD++IHE LHNCPGCE S PV+
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCE----SKPVIT 461
>gi|6323033|ref|NP_013105.1| Ssl1p [Saccharomyces cerevisiae S288c]
gi|417813|sp|Q04673.1|SSL1_YEAST RecName: Full=Suppressor of stem-loop protein 1; AltName:
Full=General transcription and DNA repair factor IIH
subunit SSL1; Short=TFIIH subunit SSL1
gi|2696|emb|CAA78992.1| suppressor of stem-loop [Saccharomyces cerevisiae]
gi|1360294|emb|CAA97527.1| SSL1 [Saccharomyces cerevisiae]
gi|190406046|gb|EDV09313.1| suppressor of stem-loop protein 1 [Saccharomyces cerevisiae
RM11-1a]
gi|256272337|gb|EEU07321.1| Ssl1p [Saccharomyces cerevisiae JAY291]
gi|259147994|emb|CAY81243.1| Ssl1p [Saccharomyces cerevisiae EC1118]
gi|285813427|tpg|DAA09323.1| TPA: Ssl1p [Saccharomyces cerevisiae S288c]
gi|323308054|gb|EGA61307.1| Ssl1p [Saccharomyces cerevisiae FostersO]
gi|323332472|gb|EGA73880.1| Ssl1p [Saccharomyces cerevisiae AWRI796]
gi|365764293|gb|EHN05817.1| Ssl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|384214|prf||1905312A SSL1 gene
Length = 461
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 233/401 (58%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + S + ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIV--EARKKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFRSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|400594628|gb|EJP62466.1| TFIIH basal transcription factor complex p47 subunit , putative
[Beauveria bassiana ARSEF 2860]
Length = 503
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 245/437 (56%), Gaps = 62/437 (14%)
Query: 28 EAWERSYADDRSWEA--LQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
+AWE+S R+WE +E E G L + A+ RRRLR T +Q+G+I
Sbjct: 70 QAWEKS---KRTWETDLPEEGEDGTL----DLTTLEAEKRRRLR-----RDTTPLQRGII 117
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R+L +V+D+S A A+ D P+R + + AFVREFF+QNP+SQ+G+V ++DGVA ++
Sbjct: 118 RHLMLVLDMSFAMADKDMLPTRHRLTLRYAAAFVREFFEQNPISQLGIVGMRDGVAVRIS 177
Query: 146 DLGGSPESH---IKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
DLGG+P H +KAL G+ G+ S+QNAL++ G L PS+G REVLI+Y AL +
Sbjct: 178 DLGGNPAEHLERLKALEGQ-DPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSS 236
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELIL 258
DPGDI +T+ +IR S++GLSA + IC LC T Y+VA+DE H +EL L
Sbjct: 237 DPGDIHDTMTNLISDRIRVSIVGLSAHLSICAELCSRTNAGDTSQYNVAMDEVHFRELFL 296
Query: 259 EHAPPP-PAIAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVCE 315
PP E + ASL+ MGFP R A G++S C+CH + G+ C RC +RVC
Sbjct: 297 AATTPPITRTQEQSTASLLMMGFPSRVLAPGGAVSYCACHNK-PCREGFLCTRCGSRVCR 355
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQ----- 369
LP EC CGL L+ S HLARSYHHLFP+ + E + N ++S CF CQ
Sbjct: 356 LPAECPACGLTLILSTHLARSYHHLFPLRNWVEVPWA------NAAQSAACFACQCPFSA 409
Query: 370 ---------------------QSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCP 408
+ L A G AC C HFC++CD+Y HE +HNCP
Sbjct: 410 PPRTVEGGVNGEKHADTQETGRRLAAKGVSESGRYACEVCGNHFCIDCDVYAHEVIHNCP 469
Query: 409 GCES---LRQSNPVVAN 422
GC+S L Q N N
Sbjct: 470 GCQSNVQLPQENGAQTN 486
>gi|323336560|gb|EGA77826.1| Ssl1p [Saccharomyces cerevisiae Vin13]
Length = 461
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 233/401 (58%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + S + ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIV--EARKKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFRSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|151941173|gb|EDN59551.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
Length = 461
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 233/401 (58%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + S + ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIV--EARKKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFPSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|349579731|dbj|GAA24892.1| K7_Ssl1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 461
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 233/401 (58%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + S + ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIV--EARKKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQGHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFRSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|289743109|gb|ADD20302.1| RNA polymerase II transcription initiation [Glossina morsitans
morsitans]
Length = 419
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 240/396 (60%), Gaps = 30/396 (7%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WE ++ED+ G L I A+ +R+ + T + + G++R+L+
Sbjct: 14 WETGY--EKTWEGIKEDDDGILDDAIAEIIQKAKRKRQAQ------KTKQNKLGMMRHLF 65
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I++D S + + D +P+R++ + +E F+ EFFDQNP+SQ+GL+ +K A +T L G
Sbjct: 66 IILDCSESMSVPDLKPTRLLCTLRLLEIFIEEFFDQNPVSQMGLIVLKSKRAEKITALTG 125
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + H+ AL + K+ SG+ S+QN LDL L +PS+ RE+L++ ++L+TCDP DI
Sbjct: 126 TAKLHLNALESLSKISLSGEPSLQNGLDLALKSLKVVPSHASREILVIMASLTTCDPVDI 185
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
TI K IRCSVI LSAE+++C+HL Q+T G Y LD++H ++ +L + PP A
Sbjct: 186 NVTIDILKNEGIRCSVISLSAEIYVCRHLTQQTVGLYGAVLDDAHFRDQLLAYIDPPAA- 244
Query: 268 AEFAIASLIKMGFPQ-RAGEGS---ISICSCHKEVK------IGVGYTCPRCKARVCELP 317
++ SLIKMGFP RA E +S+C CH E GY CP+C ++ CELP
Sbjct: 245 SQTQENSLIKMGFPHARADESKDPPLSMCMCHIENPEEPSKLTSGGYHCPQCFSKYCELP 304
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN 377
EC+ CGL LVS+PHLARSYHHLFP+ F E +N + C+ CQ+ L S N
Sbjct: 305 VECQTCGLTLVSAPHLARSYHHLFPVQHFAELA-------YNGQAAVCYACQRPLSESTN 357
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
K C C + +C +CDI+IH++LH C GC ++
Sbjct: 358 K--FVYRCEICTQIYCCDCDIFIHDTLHTCVGCNTI 391
>gi|323303957|gb|EGA57737.1| Ssl1p [Saccharomyces cerevisiae FostersB]
Length = 461
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 236/401 (58%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + ++I A+ ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASL-VASIXEAR-KKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFRSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|449541165|gb|EMD32151.1| hypothetical protein CERSUDRAFT_119123 [Ceriporiopsis subvermispora
B]
Length = 445
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 240/402 (59%), Gaps = 32/402 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE +Y RSW+ +QEDE+G L+ I + R L + I++ +IR+L
Sbjct: 54 AWEAAYT--RSWDTVQEDEAGSLQGAVQELIARGRRR------RLLAPASAIRRTIIRHL 105
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+VIDLS + + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 106 ILVIDLSSSMMDRDMRPTRFDLMLQYAREFIIEWFDQNPLGQIGIVGMRSGLGERIGEMT 165
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ +KA+ KL G+ S+QNA+D+ ++ +P + RE+ I++ +L+TCDPG+
Sbjct: 166 GNPQEVLKAISERHKLEPGGEPSLQNAIDMARSSMSHLPVHSSREITIIFGSLTTCDPGN 225
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I +T++ C + +IR S++ L+AEM IC+ LC +TGG + VAL+E H K+L+ E PPP A
Sbjct: 226 IHDTLEDCIKDRIRISIVALAAEMKICRDLCDKTGGQFGVALNEGHFKDLLFELIPPPVA 285
Query: 267 IA--------EFAIASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVCELP 317
A A L+ MGFP R + S +C CH ++K G+ CPRC+A+VC++P
Sbjct: 286 RALARTGGAPANPAADLMIMGFPTRLPDTSPPGLCVCHSKLK-SEGFLCPRCRAKVCDVP 344
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL----- 372
T+C ICGL +VSSPHLARSYHHLFP+ + L D N + S C GC +
Sbjct: 345 TDCDICGLMIVSSPHLARSYHHLFPVKAYQAVI--SLEDTPNPAPS-CHGCSTAFREAAP 401
Query: 373 LASGNKAGLC----VACPKCKKHFCLECDIYIHESLHNCPGC 410
+ G+ CP C FC +CD+++H+ +H CPGC
Sbjct: 402 AMANTSDGMSPLGRYRCPDCHNDFCTDCDVFVHDVVHCCPGC 443
>gi|395325355|gb|EJF57779.1| TFIIH basal transcription factor complex subunit SSL1 [Dichomitus
squalens LYAD-421 SS1]
Length = 448
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 246/400 (61%), Gaps = 30/400 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE +Y RSW+ +QEDE+G L + I + R L A I++ +IR+L
Sbjct: 59 AWEATYT--RSWDTVQEDEAGRLEGAVQNLIARGRRR------RLLAPAAAIRRTIIRHL 110
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+DLS A + D RP+R ++ + FV E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 111 VLVLDLSSAMMDRDMRPTRFDLMLQYAREFVTEWFDQNPLGQIGIVGMRGGLGERIGEMS 170
Query: 149 GSPESHIKALM--GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ +KA++ KL +G+ S+QNA+++ ++ +P+ RE+++++ +L+TCDPG+
Sbjct: 171 GNPQDVLKAILERHKLLPNGEPSLQNAVEMARSSMSHLPTQSSREIVVIFGSLTTCDPGN 230
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP- 265
I +T+ +C + +IR S++ L+AEM +C+ LC +TGG + VA++E H K+L+ E PPP
Sbjct: 231 IHDTLDECVKDRIRISIVALAAEMKVCRELCDKTGGQFGVAMNEGHFKDLLFELIPPPAQ 290
Query: 266 -AIAEFA---IASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVCELPTEC 320
A+A A L+ MGFP R + S S+C CH ++K G+ CPRC A+VC++PT+C
Sbjct: 291 RAVARTGGGTAADLMIMGFPMRLPDTSPPSLCVCHSQMK-SEGFLCPRCLAKVCDVPTDC 349
Query: 321 RICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC------QQSLLA 374
ICGL +VSSPHLARSYHHLFP+ + T L+D S+ C GC S +
Sbjct: 350 DICGLMIVSSPHLARSYHHLFPVKSYSAVT--TLDDTPEPSKR-CHGCAVAFKETPSTML 406
Query: 375 SGNKAGLC----VACPKCKKHFCLECDIYIHESLHNCPGC 410
+ G+ C +C FC +CD+++H+ +H CPGC
Sbjct: 407 GASGEGMSPYGRYRCLECHSDFCADCDVFVHDVVHCCPGC 446
>gi|255948596|ref|XP_002565065.1| Pc22g11160 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592082|emb|CAP98404.1| Pc22g11160 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 450
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 169/453 (37%), Positives = 253/453 (55%), Gaps = 53/453 (11%)
Query: 1 MKNSERSRLNGEAEEEDDEE----------ENLNGGLEAWERSYADDRSWEALQEDESGF 50
M +S+ + E+EDD + GG E WE S R+WE L E G
Sbjct: 1 MADSDEEYVGEVTEDEDDLQVTRGDNSRARRKQRGGAE-WELS----RTWETLVEGADGT 55
Query: 51 LRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVV 110
+ + + +R L+ T +Q+G+IR+L +++DLS++ +E D RP+R ++
Sbjct: 56 INSTVEGLLEAGKRKRLLKD------TTPLQRGIIRHLILILDLSQSMSEKDLRPTRYLL 109
Query: 111 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDS 168
+ + FVREFF+QNP+SQ+G++ ++DG+A ++ + G+P H+ A+ + G
Sbjct: 110 TLRYAQEFVREFFEQNPISQLGVLGLRDGLALRVSAMSGNPTEHLTAIQTLKTQDPKGLP 169
Query: 169 SIQNALDLVHGLL---NQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIG 225
S+QN L++ G L + PS+G REVL +Y +L + DPGDI TI KIR ++G
Sbjct: 170 SLQNGLEMARGALFEFSHTPSHGTREVLFIYGSLLSSDPGDIHRTIDTLISDKIRVGIVG 229
Query: 226 LSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF-AIASLIKMGF 280
L A++ IC+ LC +T G Y VAL+E H +EL+++ PP A ++ + +SL+ MGF
Sbjct: 230 LGAQVAICRELCTKTNGGDETAYGVALNEQHFRELMMDVTTPPAAYSQKESASSLLMMGF 289
Query: 281 PQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHL 340
P R E S S+C+CH + G GY C RC ++VC LP EC CGL L+ S HLARSYHHL
Sbjct: 290 PSRTVESSPSLCACHSKPSRG-GYLCSRCNSKVCSLPAECPSCGLTLILSTHLARSYHHL 348
Query: 341 FPIAPFDEATPSRLNDLHNISRSTCFGCQQSL----------LASGNKAGLCVA----CP 386
FP+ + E R + S CF C S A G+ V+ C
Sbjct: 349 FPLINWVEVPWRRAS-----RSSACFACGLSFPSVPPEDHWQTAENQTKGMSVSSRYECT 403
Query: 387 KCKKHFCLECDIYIHESLHNCPGCESLRQSNPV 419
C HFC++CD++ HE +HNCPGC+S +SNP+
Sbjct: 404 ACHNHFCIDCDLFAHEVVHNCPGCQS--RSNPL 434
>gi|365990367|ref|XP_003672013.1| hypothetical protein NDAI_0I02010 [Naumovozyma dairenensis CBS 421]
gi|343770787|emb|CCD26770.1| hypothetical protein NDAI_0I02010 [Naumovozyma dairenensis CBS 421]
Length = 520
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 233/406 (57%), Gaps = 28/406 (6%)
Query: 21 ENLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
+NL G G AWE RSW+ + DE + + S I + R++ + +
Sbjct: 124 QNLLGASGGYAWEDEIK--RSWDLVTVDEENDMASLVASII---EARKKRTAKKIVTP-- 176
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
Q+G+IR L + +D S + AE D RP+R ++ + FV EFFDQNP+SQ+G++ +K+
Sbjct: 177 -YQRGIIRTLILTLDCSESMAEKDLRPNRHAMMIQYAIDFVHEFFDQNPISQLGILVMKN 235
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
G+A+ ++ +GG+P+ HI L + K +G+ S+QNAL++ GLL +P++ REVLI++
Sbjct: 236 GLAHLVSQVGGNPQDHIDVLKSIRKQEPAGNPSLQNALEMARGLLLPVPAHCTREVLIIF 295
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESH 252
+LS+ DPGDI +TI + KIR VIGLSA++ ICK LC T Y + LDE+H
Sbjct: 296 GSLSSTDPGDIHQTINSLVQEKIRVKVIGLSAQVAICKELCMATNYGDDSFYKILLDETH 355
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKAR 312
KEL E P P +L+KMGFP R E S + CSCH ++ G GY CP C ++
Sbjct: 356 FKELFDEAVTPLPVNKINKGFTLVKMGFPTRIFEDSPTFCSCHSKLVYG-GYFCPSCHSK 414
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
VC LPT C C L L+ S HLARSYHHL P+ F E PS CF CQ
Sbjct: 415 VCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFLEV-PSN----ETFPTENCFSCQLKF 469
Query: 373 --LASGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
L + L + C C FC++CD++IHE LHNCPGCES
Sbjct: 470 PTLKNQRNGSLLTSSRYRCSSCHSDFCIDCDVFIHEILHNCPGCES 515
>gi|403214446|emb|CCK68947.1| hypothetical protein KNAG_0B05150 [Kazachstania naganishii CBS
8797]
Length = 469
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 168/424 (39%), Positives = 243/424 (57%), Gaps = 29/424 (6%)
Query: 1 MKNSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIY 60
MK++ +R +A +D +GG AWE RSW+ + D+ G + + S +
Sbjct: 59 MKDARNNRRKRKAANKD--LLGASGGY-AWEDEIK--RSWDLVTVDDEGDMTSLVASLV- 112
Query: 61 HAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVR 120
++R R +T Q+G+IR L + +D S + E D RP+R ++ + FV
Sbjct: 113 -EARKKRAAKRDVTP----YQRGIIRTLILTLDCSESMTEKDLRPNRHAMMIQYAIDFVH 167
Query: 121 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVH 178
EFFD+NP+SQIG+V +++G+A+ ++ + G+P+ H+ AL M K G+ S+QNAL+L
Sbjct: 168 EFFDENPISQIGIVIMRNGLAHLVSSVSGNPQDHLDALKHMRKQEPKGNPSLQNALELAR 227
Query: 179 GLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQ 238
GLL +PS+ REVLI++ +LS+ DPGDI +TI + KIR VIGLSA++ +CK LC+
Sbjct: 228 GLLLPVPSHSTREVLIIFGSLSSTDPGDIHQTIASLVDEKIRVKVIGLSAQVAVCKELCK 287
Query: 239 ETG----GTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSC 294
T Y + LDE+H K+L E P P +L+KMGFP R E + CSC
Sbjct: 288 LTNFGDDSFYKILLDETHFKDLFDEAVTPLPVNKINKGFTLVKMGFPTRVFESVPTFCSC 347
Query: 295 HKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRL 354
H ++ G GY CP C +VC LPT C C L L+ S HLARSYHHL P+ F+E
Sbjct: 348 HSKLIYG-GYFCPNCHNKVCSLPTVCPCCDLTLILSTHLARSYHHLMPLKTFNEVDAKET 406
Query: 355 NDLHNISRSTCFGCQQS--LLASGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCP 408
N CF CQ+ +L + L + C C++ FC++CD++IHE LHNCP
Sbjct: 407 FPTEN-----CFACQRRFPILKNHKSDQLLTSSRYRCDDCRQDFCIDCDVFIHEVLHNCP 461
Query: 409 GCES 412
GCES
Sbjct: 462 GCES 465
>gi|196007624|ref|XP_002113678.1| hypothetical protein TRIADDRAFT_57351 [Trichoplax adhaerens]
gi|190584082|gb|EDV24152.1| hypothetical protein TRIADDRAFT_57351 [Trichoplax adhaerens]
Length = 353
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 218/351 (62%), Gaps = 30/351 (8%)
Query: 18 DEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVAT 77
D+ +++ G WE S+ +R+WE L EDE G L+ S + Q R R R +
Sbjct: 3 DDADDVESGYR-WESSF--ERTWEVLVEDEQGSLK----STVDELQ---RARKRRVADRK 52
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
A ++ GL+R++YI++D+S A + +D +P+R+V K ++ F+ E+FDQNP+SQ+G++ +
Sbjct: 53 ANVRLGLMRHMYIIVDMSSAISIIDLKPNRLVATVKLLDDFITEYFDQNPISQLGVIITR 112
Query: 138 DGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
+ A LTD+GG+P HI AL C G+ S+QNAL+L L +PS+ RE+L++
Sbjct: 113 NKRAEKLTDIGGNPRRHIAALRQAACKPCIGEPSLQNALELASQTLRHVPSHASREILVI 172
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
Y++L++CDP DI T++ E IRCS IGLSAEM+I K L ETGG+Y V LDE H KE
Sbjct: 173 YASLTSCDPSDIHATVKNLVEDNIRCSAIGLSAEMYILKKLASETGGSYRVILDEHHYKE 232
Query: 256 LILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKI-----GVGYTCPRCK 310
L+ + PP A + +SLI+MGFP+ S+C CH + ++ GY CP+CK
Sbjct: 233 LLTHYVIPPVATGKLG-SSLIRMGFPEYRTNSHPSMCQCHLDSRVVKSFSTTGYFCPQCK 291
Query: 311 ARVCELPTECRICG------------LQLVSSPHLARSYHHLFPIAPFDEA 349
A+ CELP EC+ICG L LVS+PHLARSY HLFP+ F+E
Sbjct: 292 AKYCELPIECQICGKMNITTKTRNMRLSLVSAPHLARSYQHLFPLEDFEEV 342
>gi|388580345|gb|EIM20660.1| TFIIH basal transcription factor complex, subunit SSL1 [Wallemia
sebi CBS 633.66]
Length = 444
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 250/432 (57%), Gaps = 45/432 (10%)
Query: 11 GEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRG 70
G+ ++ + + + G +WE Y RSW+ + EDESG L N+ I + RRR G
Sbjct: 27 GDFDQTNSKSKQKETGY-SWESEYK--RSWDVVAEDESGSLTTSVNAFIERNKRRRRHGG 83
Query: 71 RSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQ 130
IQ+ +IR+ +V+DLS A ++ D RP+R ++ + +V+E+FDQNP+ Q
Sbjct: 84 -------IPIQRAIIRHNLLVLDLSLAMSDRDMRPNRFLLSLEYAREYVKEYFDQNPIGQ 136
Query: 131 IGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYG 188
+G + ++ GVA + + GS +K+L K L +G+ S+QNAL++ + +P++
Sbjct: 137 MGAIGMRSGVAEWICKMSGSQHDLVKSLQNKNKLEPNGEPSLQNALEMARASMAHLPTHA 196
Query: 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL 248
RE+++++ +L+TCDPG+I +T++ KIR ++I L+AE+ I + + ++TGGT SVAL
Sbjct: 197 SREIVVVFGSLTTCDPGNIHDTLRALIRDKIRVNIISLAAEVRILREVAEKTGGTLSVAL 256
Query: 249 DESHSKELILEHAPPPPAIAEFAI------------ASLIKMGFPQR-AGEGSISICSCH 295
DE H K+++ E PPP A+ + L++MGF R +++C+CH
Sbjct: 257 DEGHYKDVLFETVPPPAVHTAKALNTVEQGGGSVDESDLMQMGFAVRLPYTAPLTLCACH 316
Query: 296 KEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLN 355
E++ GY CPRC +++C++PT+C +C L +VSSPHLARSYHHLFP+ + P +
Sbjct: 317 SELR-RQGYICPRCGSKLCDIPTDCAVCDLVVVSSPHLARSYHHLFPVPDWAVVNPQAIT 375
Query: 356 DLHNISRSTCFGCQ-------QSLLASGNKAGLCVA---------CPKCKKHFCLECDIY 399
+ S + CFGC+ QS+ A A CPKC FC ECDIY
Sbjct: 376 E---TSDTRCFGCRQVFPPVAQSMTLPTPTAATVSANISATGRYRCPKCMHDFCSECDIY 432
Query: 400 IHESLHNCPGCE 411
HE+LH CPGC+
Sbjct: 433 CHETLHVCPGCQ 444
>gi|392865317|gb|EAS31097.2| transcription factor ssl1 [Coccidioides immitis RS]
Length = 471
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 236/401 (58%), Gaps = 43/401 (10%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
R+WE+L E G + + + +R LR T +Q+G+IR+L +V+DLS A
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVLDLSIA 113
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
+E D RP+R ++ + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 114 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 173
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ + +G S+QNAL++ G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 174 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGALLSSDPGDIHKTITSLV 233
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF- 270
KIR V+GL+AE+ IC+ +C +T Y VAL+E H +EL++E PP ++
Sbjct: 234 TDKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQ 293
Query: 271 AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSS 330
A+ SL+ MGFP R E S S+C+CH + G GY C RC +++C LP EC CGL L+ S
Sbjct: 294 AVNSLLMMGFPSRTVESSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILS 352
Query: 331 PHLARSYHHLFPI-----APFDEATPSRLNDLHNISRSTCFGC----------QQSLLAS 375
HLARSYHHLFP+ P+++A+ S S CF C Q
Sbjct: 353 THLARSYHHLFPLINWVEVPWNKASIS----------SNCFACGNPFPPVPVRAQWETRG 402
Query: 376 GNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 403 GTVKGMSVSSRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|195160565|ref|XP_002021146.1| GL24973 [Drosophila persimilis]
gi|194118259|gb|EDW40302.1| GL24973 [Drosophila persimilis]
Length = 445
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/419 (37%), Positives = 247/419 (58%), Gaps = 36/419 (8%)
Query: 14 EEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSL 73
++ DD++E WE Y +++WEA+++DE G L I A+ +R+ +
Sbjct: 4 DDRDDQKEY------RWETGY--EKTWEAIKDDEDGLLDGAIADIIQKAKRQRQAQ---- 51
Query: 74 TVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGL 133
T + + G++R+L+I++D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G+
Sbjct: 52 --KTKQNRLGMMRHLFIILDCSESMSVPDLKPTRLRCTIKLLEQFIEEFFDQNPISQMGI 109
Query: 134 VTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+ +K A +T+L G+ H+KAL G + + + S+QN LDL L +PS+ RE
Sbjct: 110 IALKAKRAEKITELTGTSRVHLKALEGLANVPLTSEPSLQNGLDLALKTLKVVPSHASRE 169
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
++I+ +L+TCDP DI TI + K+ IRCSVI LSAE+ I ++L Q+T GT+ LD++
Sbjct: 170 IVIVMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHIARYLTQQTRGTFGAVLDDA 229
Query: 252 HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKI 300
H ++ ++ PPPA A+ SLI+MGFP E +S+C CH E
Sbjct: 230 HFRDQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELC 288
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE----ATPSRLND 356
G+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+E + P +D
Sbjct: 289 TTGHHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEEIPFDSLPKASSD 348
Query: 357 --LHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
+ C+ C + + +K C CK+ FCL+CDI+IH++LH C GC ++
Sbjct: 349 RGGTGTGTTECYACMKLFVPVADKT--VFKCGFCKQFFCLDCDIFIHDTLHACVGCNTI 405
>gi|342888788|gb|EGU88007.1| hypothetical protein FOXB_01490 [Fusarium oxysporum Fo5176]
Length = 468
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/427 (40%), Positives = 237/427 (55%), Gaps = 50/427 (11%)
Query: 29 AWERSYADDRSWEA-LQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRY 87
AWE S R+WE L E+E G L +A+ + +R LR T +Q+G+IR+
Sbjct: 45 AWEVS---KRTWETNLPEEEDGIL---SLTALEAEKRKRLLRD------TTPLQRGIIRH 92
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
+ +V+D+S A E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++D+
Sbjct: 93 MVLVLDMSFAMTEKDLLPTRYRLMLSYAAAFVREFFEQNPISQLGIIGMRDGVAVRISDV 152
Query: 148 GGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
GG+P H++ L G G+ S+QNAL++ G L PS+G REVLI+Y AL + DPG
Sbjct: 153 GGNPTEHLEKLKGLENEDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPG 212
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHA 261
DI ETI +IR S++GLSA++ IC LC T Y++A+DE H +EL L
Sbjct: 213 DIHETIGNLITDRIRVSIVGLSAQVAICADLCSRTNAGDESQYNIAMDEVHFRELFLAAT 272
Query: 262 PPPPA-IAEFAIASLIKMGFPQRA--GEGSISICSCHKEVKIGVGYTCPRCKARVCELPT 318
PP AE + ASL+ MGFP R G+ S C+CH GY C RC ARVC +P
Sbjct: 273 TPPVTRTAEQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PFREGYLCTRCGARVCRIPA 331
Query: 319 ECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSL----- 372
EC C L L+ S HLARSYHHLFP+ + E ++ SRS CF C
Sbjct: 332 ECPACDLTLILSTHLARSYHHLFPLRNWVEVPWTK------ASRSAACFSCLAPFPEPPK 385
Query: 373 ---------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
A G AC C +HFC++CD++ HE +HNCPGC+SL
Sbjct: 386 GKAPDKSREDSGAPKTAKGVSESGRYACEVCGQHFCIDCDVFAHEVVHNCPGCQSLLSKT 445
Query: 418 PVVANEG 424
A+ G
Sbjct: 446 DAAASSG 452
>gi|392578803|gb|EIW71930.1| hypothetical protein TREMEDRAFT_72606 [Tremella mesenterica DSM
1558]
Length = 462
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/450 (35%), Positives = 246/450 (54%), Gaps = 61/450 (13%)
Query: 2 KNSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYH 61
K + +NG+AE+ G WE +Y +RSW+ +QED G L+ +S I
Sbjct: 31 KGKHNASVNGQAEK----------GQAVWEGTY--NRSWDVVQEDAEGGLQSAVDSLIAR 78
Query: 62 AQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVRE 121
+ +R +++ +IR+++I++DLS + + DFRPSR + + + ++V E
Sbjct: 79 GRRKR-------AEIDTPLRRSIIRHMFIILDLSESVLDKDFRPSRFELTLQYMRSYVVE 131
Query: 122 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHG 179
+FDQNPL QIG++ ++D ++ L +GG+P+ + L KL SG+ S+QN L + G
Sbjct: 132 WFDQNPLGQIGMIIMRDRLSEVLIPMGGNPQEILSVLTDKRKLEPSGEPSLQNGLVMAKG 191
Query: 180 LLNQIPSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHL 236
++ +PS E+L+++S++ST DP +I + + S++R S+I LS E+ IC+ +
Sbjct: 192 GMSHLPSTSSLEILVVFSSISTADPDGPINIHQVLSDLSSSRVRTSIISLSGEIKICRQI 251
Query: 237 CQETGGTYSVALDESHSKELILEHAPPPP--------------AIAEFA----------- 271
CQ TGG + VA+DE H +EL+ E PPP A+A
Sbjct: 252 CQRTGGKFGVAMDEDHLRELLWETIPPPAQTQSSNPTTLGVRNALAAGGNRVDGDGSRPP 311
Query: 272 -IASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSS 330
+ L+ MGFP R G ++C CH +K G GY CPRC +++C++PT+C +CGL +VSS
Sbjct: 312 PVGDLMVMGFPVRLPPGGETLCVCHGLLKKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSS 370
Query: 331 PHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA------ 384
PHLARS+ LFP+A +D T S TC+GC +S V
Sbjct: 371 PHLARSFWFLFPVAHYDALTVETTMGDRERSSPTCYGCDRSFKTMDETGSAHVVDGISPT 430
Query: 385 ----CPKCKKHFCLECDIYIHESLHNCPGC 410
C +C K FC ECD+YIH++LH CPGC
Sbjct: 431 GRYRCARCFKDFCSECDLYIHDTLHTCPGC 460
>gi|51013237|gb|AAT92912.1| YLR005W [Saccharomyces cerevisiae]
Length = 461
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 232/401 (57%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + S + ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIV--EARKKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + + S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLGCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFRSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|195440790|ref|XP_002068223.1| GK12882 [Drosophila willistoni]
gi|194164308|gb|EDW79209.1| GK12882 [Drosophila willistoni]
Length = 454
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 15 EEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
EEDD++E WE Y +++WEA++ED+ G L I A+ +R+L
Sbjct: 2 EEDDQKEY------RWETGY--EKTWEAIKEDDDGMLDGAIADIIQKAKRQRQLE----- 48
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
T + + G++R++++VID S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++
Sbjct: 49 -KTKQNRLGMMRHVFLVIDCSESMSVPDLKPTRLRCTLKLLEIFIDEFFDQNPISQLGII 107
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
+K A +T+L G+ H+KAL + + + + S+QN LD+ L +PS+ RE+
Sbjct: 108 ALKAKRAEKITELTGTSRVHLKALESLANVVLTSEPSLQNGLDMALKTLKVVPSHASREI 167
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+I+ +L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L +ET G+Y LD++H
Sbjct: 168 VIIMGSLTTCDPVDINLTINELKKEGIRCSVISLSAEIHVARYLAKETMGSYGAVLDDAH 227
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAG------EGSISICSCHKEVK------I 300
++ +L PPPA A+ SLI+MGFP + +S+C CH E
Sbjct: 228 FRDQLLSQVDPPPA-AKTQHNSLIRMGFPHSTSNEADGKDAPLSMCMCHIENVDEPSELS 286
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNI 360
G+ CP+C ++ CELP EC+ C L LVS+PHLARSYHH+FP+ F+E +L
Sbjct: 287 TTGHYCPQCHSKYCELPVECQSCDLTLVSAPHLARSYHHIFPVPNFEEMPHDQLP----- 341
Query: 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ CF C + L +K C C + FCL+CDI+IHE+LH C GC S
Sbjct: 342 GPTECFSCAKLLATVADKT--VYKCIHCGEVFCLDCDIFIHETLHACVGCNS 391
>gi|198464821|ref|XP_001353376.2| GA10767 [Drosophila pseudoobscura pseudoobscura]
gi|198149896|gb|EAL30883.2| GA10767 [Drosophila pseudoobscura pseudoobscura]
Length = 445
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/419 (37%), Positives = 247/419 (58%), Gaps = 36/419 (8%)
Query: 14 EEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSL 73
++ DD++E WE Y +++WEA+++DE G L I A+ +R+ +
Sbjct: 4 DDRDDQKEY------RWETGY--EKTWEAIKDDEDGLLDGAIADIIQKAKRQRQAQ---- 51
Query: 74 TVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGL 133
T + + G++R+L+I++D S + + D +P+R+ K ++ F+ EFFDQNP+SQ+G+
Sbjct: 52 --KTKQNRLGMMRHLFIILDCSESMSVPDLKPTRLRCTIKLLDQFIEEFFDQNPISQMGI 109
Query: 134 VTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+ +K A +T+L G+ H+KAL G + + + S+QN LDL L +PS+ RE
Sbjct: 110 IALKAKRAEKITELTGTSRVHLKALEGLANVPLTSEPSLQNGLDLALKTLKVVPSHASRE 169
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
++I+ +L+TCDP DI TI + K+ IRCSVI LSAE+ I ++L Q+T GT+ LD++
Sbjct: 170 IVIVMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHIARYLTQQTRGTFGAVLDDA 229
Query: 252 HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGE-----GSISICSCHKE------VKI 300
H ++ ++ PPPA A+ SLI+MGFP E +S+C CH E
Sbjct: 230 HFRDQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELC 288
Query: 301 GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE----ATPSRLND 356
G+ CP+C ++ CELP EC+ CGL LVS+PHLARSYHHLFP+ F+E + P +D
Sbjct: 289 TTGHHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEEIPFDSLPKASSD 348
Query: 357 --LHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
+ C+ C + + +K C CK+ FCL+CDI+IH++LH C GC ++
Sbjct: 349 RGGTGTGTTECYACMKLFVPVADKT--VFKCGFCKQFFCLDCDIFIHDTLHACVGCNTI 405
>gi|169776637|ref|XP_001822785.1| TFIIH basal transcription factor complex p47 subunit [Aspergillus
oryzae RIB40]
gi|83771520|dbj|BAE61652.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874438|gb|EIT83320.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 458
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/449 (36%), Positives = 247/449 (55%), Gaps = 54/449 (12%)
Query: 1 MKNSERSRLNGEAEEEDD----------------EEENLNGGLEAWERSYADDRSWEALQ 44
M +S+ + +E+EDD + GG E WE S R+WE L
Sbjct: 1 MGDSDEEYIGEVSEDEDDNNVFRGSRSEGSASRAKRRKQRGGAE-WEVS----RTWETLV 55
Query: 45 EDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFR 104
E G + + + +R L+ T +Q+G+IR+L ++IDLS++ E D R
Sbjct: 56 EGADGTISSTVEGLLEAGKRKRLLKD------TTPLQRGIIRHLILIIDLSQSMTEKDLR 109
Query: 105 PSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKL 162
P+R ++ + + VREFF+QNP+SQ+G++ ++DG+A ++DL G+P HI A+ +
Sbjct: 110 PTRYLLTLRYAQELVREFFEQNPISQLGVLGLRDGLAIRISDLSGNPTEHISAIQTLRDQ 169
Query: 163 GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCS 222
G S+QN +++ G L PS+G RE+ I++ +L + DPGDI +TI K+R
Sbjct: 170 DPKGLPSLQNGIEMARGALFHTPSHGTREIFIIFGSLLSSDPGDIHQTIANLINDKVRVG 229
Query: 223 VIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEFAIA-SLIK 277
++GL+A++ IC+ LC +T G Y VAL+E H +EL+++ PP ++ A SL+
Sbjct: 230 IVGLAAQVAICRELCAKTNGGDDTRYGVALNEQHFRELLMDVTTPPATYSQKQSASSLLM 289
Query: 278 MGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSY 337
MGFP R E S S+C+CH + G GY C RC ++VC LP EC CGL L+ S HLARSY
Sbjct: 290 MGFPSRTVETSPSLCACHSKSSCG-GYLCSRCNSKVCGLPAECPSCGLTLILSTHLARSY 348
Query: 338 HHLFPIAPFDEATPSRLNDLHNISRSTCFGC----------QQSLLASGNKAGLCVA--- 384
HHLFP+ + E R + S CF C Q G+ V+
Sbjct: 349 HHLFPLVNWVEVPWQRAS-----RSSVCFACGIAFPPVPPKDQWQTTENQAKGMSVSSRY 403
Query: 385 -CPKCKKHFCLECDIYIHESLHNCPGCES 412
C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 404 ECTVCENHFCIDCDLFAHEVVHNCPGCQS 432
>gi|358391363|gb|EHK40767.1| hypothetical protein TRIATDRAFT_78413 [Trichoderma atroviride IMI
206040]
Length = 476
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 178/425 (41%), Positives = 240/425 (56%), Gaps = 57/425 (13%)
Query: 26 GLEAWERSYADDRSWEA-LQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
G +AWE+S R+WE L E++ G L N A Y A+ RR L T +Q+G+
Sbjct: 46 GSKAWEQS---KRTWETDLPEEDDGML----NLAGYEAERRR-----RLLRDTTPLQRGI 93
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR+L +V+D+S A AE D P+R + AFVRE+F+QNP+SQ+G+V ++DGVA +
Sbjct: 94 IRHLVLVLDMSFAMAEKDLLPTRHRLTLSYAAAFVREYFEQNPISQLGIVGMRDGVAVRI 153
Query: 145 TDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
+D+GG+P H++ L G G+ S+QNAL++ G L PS+G REVLI+Y AL +
Sbjct: 154 SDMGGNPAEHLERLRDLEGQDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSS 213
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELIL 258
DPGDI +TI +IR SV+GLSA++ IC LC T Y+VA+DE+H +EL L
Sbjct: 214 DPGDIHDTIGNLIADRIRVSVVGLSAQVAICAELCSRTNAGDESQYNVAMDETHYRELFL 273
Query: 259 EHAPPP-PAIAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVCE 315
PP E + +SL+ MGFP R A G+ S C+CH + GY C RC A+VC
Sbjct: 274 AATTPPVNRTKEQSTSSLLMMGFPSRTLAPGGTTSYCACHSK-PCREGYLCTRCSAKVCR 332
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPI-----APFDEATPSRLNDLHNISRSTCFGCQQ 370
LP+EC CGL L+ S HLARSYHHLFP+ P+ EAT S CF CQ
Sbjct: 333 LPSECPACGLTLILSTHLARSYHHLFPLRNWVEVPWAEATQS----------IACFSCQT 382
Query: 371 SL-------------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
LA G C C HFC++CD++ H +HNCPGC+
Sbjct: 383 FFPEPPKSIKDKGKDEAPAKALAKGVSESGRYKCQVCGNHFCIDCDVFAHMVIHNCPGCQ 442
Query: 412 SLRQS 416
S Q+
Sbjct: 443 SQSQA 447
>gi|146324050|ref|XP_001481497.1| RNA polymerase TFIIH complex subunit Ssl1 [Aspergillus fumigatus
Af293]
gi|129556348|gb|EBA27248.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
fumigatus Af293]
gi|159126166|gb|EDP51282.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus fumigatus A1163]
Length = 456
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 163/410 (39%), Positives = 236/410 (57%), Gaps = 40/410 (9%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
GG E WE S R+WE L E G + + + +R LR T +Q+G+
Sbjct: 41 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGI 89
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR+L +++DLS++ AE D RP+R ++ + + FVREFF+QNP+SQ+G++ ++DG+A +
Sbjct: 90 IRHLILILDLSQSMAEKDLRPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRV 149
Query: 145 TDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
+D+ G+P HI A+ + G S+QN L++ G L PS+G REV +++ ++ +
Sbjct: 150 SDMSGNPTEHISAIQALRDHDPKGLPSLQNGLEMARGALFHTPSHGTREVFVIFGSILSS 209
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELIL 258
DPGDI +TI KI + GL+A++ IC+ LC T TY VAL+E H +EL++
Sbjct: 210 DPGDIHQTITTLINDKISVRIAGLAAQVAICRELCSRTNAGDDTTYGVALNEQHFRELMM 269
Query: 259 EHAPPPPAIAE-FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+ PP ++ A +SL+ MGFP R E S+C+CH E G GY C RC ++VC LP
Sbjct: 270 DVTTPPVTYSQKKATSSLLMMGFPSRTVETCPSLCACHSEPSCG-GYLCSRCNSKVCGLP 328
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGC-------- 368
EC CGL L+ S HLARSYHHLFP+ + E R SRS TCF C
Sbjct: 329 AECPSCGLTLILSTHLARSYHHLFPLMNWIEVPWQR------ASRSLTCFACGIYFPTVP 382
Query: 369 --QQSLLASGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
Q G+ V+ C CK HFC++CD++ HE +HNCPGC+S
Sbjct: 383 PKDQWQATESQAKGMSVSSRYECTVCKNHFCIDCDLFAHEIVHNCPGCQS 432
>gi|444318053|ref|XP_004179684.1| hypothetical protein TBLA_0C03620 [Tetrapisispora blattae CBS 6284]
gi|387512725|emb|CCH60165.1| hypothetical protein TBLA_0C03620 [Tetrapisispora blattae CBS 6284]
Length = 447
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 171/428 (39%), Positives = 241/428 (56%), Gaps = 31/428 (7%)
Query: 2 KNSERSRLNGEAEEEDDEEENLNG-----GLEAWERSYADDRSWEALQEDESGFLRPIDN 56
KNS + NG A + + N N G AWE RSW+ ++ DE + +
Sbjct: 29 KNSGKG--NGLANNKRKKTINNNALVGESGGYAWEDEIK--RSWDLVKVDEDDDMSTLVA 84
Query: 57 SAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVE 116
S I Q ++R + +T Q+G+IR L +V+D S E D RP+R + +
Sbjct: 85 SII--EQRKKRATKKIIT----PYQRGIIRTLVLVLDCSEIMLEKDLRPNRYSMSLQYAI 138
Query: 117 AFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNAL 174
FV EFFDQNP+SQ+G++ +++G+A+ ++ + G+P+ HI +L M K G+ S+QNAL
Sbjct: 139 DFVHEFFDQNPISQMGVIIMRNGLAHLVSQISGNPQDHIDSLKAMRKQEPKGNPSLQNAL 198
Query: 175 DLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICK 234
++ GLL +P + REVLI++ LS+ DPGDI +TI + KIR +VIGLSA++ IC+
Sbjct: 199 EMARGLLLPVPPHCTREVLIVFGGLSSTDPGDIHQTITSLVQEKIRATVIGLSAQVAICQ 258
Query: 235 HLCQETG----GTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSIS 290
LC T +Y V LDE H KEL + P P +L+KMGFP R E + +
Sbjct: 259 ELCTSTNYGDSDSYRVILDEVHFKELFSQAVTPLPVNKINKGFTLVKMGFPTRVFEDTPT 318
Query: 291 ICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT 350
C+CH ++ G GY CP CK++VC LP C C L L+ S HLARSYHHL P+ F E
Sbjct: 319 FCTCHHKLIYG-GYFCPNCKSKVCSLPIVCPCCDLMLILSTHLARSYHHLMPLNTFTEVE 377
Query: 351 PSRLNDLHNISRSTCFGCQQSL-LASGNKAGLCVA-----CPKCKKHFCLECDIYIHESL 404
+ + CF CQ+ NK G + C +C K FC++CD+YIHE L
Sbjct: 378 VVKDAAF---PTNNCFSCQKGFPHLVNNKTGELLTSSRYRCGECHKDFCIDCDVYIHEIL 434
Query: 405 HNCPGCES 412
HNCPGCES
Sbjct: 435 HNCPGCES 442
>gi|320040921|gb|EFW22854.1| RNA polymerase TFIIH complex subunit Ssl1 [Coccidioides posadasii
str. Silveira]
Length = 471
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 235/401 (58%), Gaps = 43/401 (10%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
R+WE+L E G + + + +R LR T +Q+G+IR+L +V+DLS A
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVLDLSIA 113
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
+E D RP+R ++ + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 114 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 173
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ + +G S+QNAL++ G L PS+G REVLI++ L + DPGDI +TI
Sbjct: 174 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGTLLSSDPGDIHKTITSLV 233
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF- 270
KIR V+GL+AE+ IC+ +C +T Y VAL+E H +EL++E PP ++
Sbjct: 234 ADKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQ 293
Query: 271 AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSS 330
A+ SL+ MGFP R E S S+C+CH + G GY C RC +++C LP EC CGL L+ S
Sbjct: 294 AVNSLLMMGFPSRTVEPSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILS 352
Query: 331 PHLARSYHHLFPI-----APFDEATPSRLNDLHNISRSTCFGC----------QQSLLAS 375
HLARSYHHLFP+ P+++A+ S S CF C Q
Sbjct: 353 THLARSYHHLFPLINWVEVPWNKASIS----------SNCFACGNPFPPVPVRAQWETRG 402
Query: 376 GNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 403 GTVKGMSVSSRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|50288221|ref|XP_446539.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525847|emb|CAG59466.1| unnamed protein product [Candida glabrata]
Length = 439
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 164/406 (40%), Positives = 238/406 (58%), Gaps = 28/406 (6%)
Query: 21 ENLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
ENL G G AWE RSW+ + ++ G + + S + + R++ +S
Sbjct: 43 ENLQGASGGYAWEDEIK--RSWDLVAVEDEGDMATLVASIV---EARKKRAAKS---DVT 94
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
Q+G+IR L + ID S A E D RP+R ++ +Q FV EFFDQNP+SQ+G+VT+++
Sbjct: 95 PYQRGIIRTLILTIDSSEAMLEKDLRPNRHAMIIQQAIDFVHEFFDQNPISQMGIVTMRN 154
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
G+A ++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++
Sbjct: 155 GLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVF 214
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET--GGT--YSVALDESH 252
+LS+ DPGDI +TI + +IR V+GLSAE+ ICK LC++T G T Y V LDE+H
Sbjct: 215 GSLSSNDPGDIHQTIASLVQEQIRVKVLGLSAEVAICKELCKQTNMGDTSFYQVLLDETH 274
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKAR 312
K+L E P P +L+KMGFP R E + C+CH ++ G GY CP C ++
Sbjct: 275 LKKLFDEAVTPLPVNKINRGFTLVKMGFPTRIFEEQPTFCACHAKLIYG-GYFCPNCNSK 333
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL 372
VC LPT C C L L+ S HLARS+HHL P+ F E + + C+ CQ
Sbjct: 334 VCSLPTVCPCCDLMLILSTHLARSFHHLMPLKTFVEVPAA-----ESFPTENCYSCQMKF 388
Query: 373 -LASGNKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+ K+ + C +CK +C++CD++IHESLH CPGCES
Sbjct: 389 PIIKSQKSNQMLTSSRYRCEECKNDYCIDCDVFIHESLHTCPGCES 434
>gi|303319293|ref|XP_003069646.1| TFIIH basal transcription factor complex p47 subunit , putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240109332|gb|EER27501.1| TFIIH basal transcription factor complex p47 subunit , putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 471
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 235/401 (58%), Gaps = 43/401 (10%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
R+WE+L E G + + + +R LR T +Q+G+IR+L +V+DLS A
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVLDLSIA 113
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
+E D RP+R ++ + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 114 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 173
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ + +G S+QNAL++ G L PS+G REVLI++ L + DPGDI +TI
Sbjct: 174 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGTLLSSDPGDIHKTITSLV 233
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF- 270
KIR V+GL+AE+ IC+ +C +T Y VAL+E H +EL++E PP ++
Sbjct: 234 ADKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQ 293
Query: 271 AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSS 330
A+ SL+ MGFP R E S S+C+CH + G GY C RC +++C LP EC CGL L+ S
Sbjct: 294 AVNSLLMMGFPSRTVEPSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILS 352
Query: 331 PHLARSYHHLFPI-----APFDEATPSRLNDLHNISRSTCFGC----------QQSLLAS 375
HLARSYHHLFP+ P+++A+ S S CF C Q
Sbjct: 353 THLARSYHHLFPLINWVEVPWNKASIS----------SNCFACGNPFPPVPVRAQWETRG 402
Query: 376 GNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 403 GTVKGMSVSSRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|321261922|ref|XP_003195680.1| component of RNA polymerase transcription factor TFIIH; Ssl1p
[Cryptococcus gattii WM276]
gi|317462154|gb|ADV23893.1| Component of RNA polymerase transcription factor TFIIH, putative;
Ssl1p [Cryptococcus gattii WM276]
Length = 461
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 171/444 (38%), Positives = 250/444 (56%), Gaps = 53/444 (11%)
Query: 7 SRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRR 66
SR +G + +N + G +AWE Y +SW+ +QEDESG L SA+ R
Sbjct: 29 SRRHGRGAAGKRKGKNKDAGRQAWEGEY--QKSWDIVQEDESGSL----ESAVETLLARG 82
Query: 67 RLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQN 126
R R R+L T +++ +IR+L+I+IDLS + + D+RPSR V+ + +V E+FDQN
Sbjct: 83 R-RKRALMSDTP-VRRSIIRHLFIIIDLSESMLDKDYRPSRFEVILGYLRTYVVEWFDQN 140
Query: 127 PLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQI 184
PL QIG++ ++D ++ + +GGSPE ++AL KL SG+ S+QN L + G + +
Sbjct: 141 PLGQIGVIVMRDRLSEVVIPMGGSPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHL 200
Query: 185 PSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG 241
PS E L+++SA+ST DP I + IR S++ LS E+ ICK + + TG
Sbjct: 201 PSTSSLETLVIFSAISTADPDGPITIHNVLDTLVTGHIRTSILSLSGEIKICKQIAERTG 260
Query: 242 GTYSVALDESHSKELILEHAPPP-----PAIAEF--AIAS----------------LIKM 278
G + VALD+ H K+L+ E PPP P A A+A+ L+ M
Sbjct: 261 GKFGVALDQDHLKDLLWETIPPPATTITPVTANVRSALAAGGRGPNQTGGRAPAGDLMVM 320
Query: 279 GFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYH 338
GFP R G ++C+CH ++ G GY CPRC +++C++PT+C +CGL +VSSPHLARS+
Sbjct: 321 GFPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFW 379
Query: 339 HLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLL-ASGNKAGLCVA-----------CP 386
LFP+A + P + D+ S TCFGC S AG+ C
Sbjct: 380 FLFPVANYG---PLAIEDVVG-SSGTCFGCDSEFSDTSAINAGVAQVEDGVSPAGRYRCA 435
Query: 387 KCKKHFCLECDIYIHESLHNCPGC 410
KCK FC +CD+YIH++LH CPGC
Sbjct: 436 KCKHDFCADCDLYIHDTLHTCPGC 459
>gi|259481102|tpe|CBF74326.1| TPA: component of the core form of RNA polymerase transcription
factor TFIIH (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 455
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 236/396 (59%), Gaps = 33/396 (8%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
R+WE L E G + + ++ +R L+ T +Q+G+IR++ +++DLS++
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKD------TTPLQRGIIRHIILILDLSQS 101
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
E D RP+R ++ + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 102 MMEKDLRPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISA 161
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ + G S+QN L++ G L PS+G RE+ I++ +L + DPGDI +TI
Sbjct: 162 IQDLRSQDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLI 221
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF- 270
+ KIR ++GL+A++ IC+ LC T G Y VAL+E H +EL+L PP ++
Sbjct: 222 DDKIRVGIVGLAAQVAICRELCSRTNGGDDTYYGVALNEQHFRELMLAVTTPPATYSQKQ 281
Query: 271 AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSS 330
+ +SL+ MGFP R E S+C+CH G GY C RC ++VC LP EC CGL L+ S
Sbjct: 282 SASSLLMMGFPSRTIESFPSLCACHSNPTPG-GYLCSRCNSKVCGLPAECPSCGLTLILS 340
Query: 331 PHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC---------QQSLLASGNKA-G 380
HLARSYHHLFP+ + E + R + +TCF C ++ A+ N A G
Sbjct: 341 THLARSYHHLFPLMNWVEVSWERAH-----RSTTCFACGIAFPTIPPKEQWQATQNLAKG 395
Query: 381 LCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+ V+ C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 396 MSVSSRYECTVCENHFCIDCDLFAHEVVHNCPGCQS 431
>gi|147862851|emb|CAN82988.1| hypothetical protein VITISV_011714 [Vitis vinifera]
Length = 199
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/193 (73%), Positives = 153/193 (79%)
Query: 231 FICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSIS 290
F+ C T + L +SH KEL+LEHAPPPPAIAEFAIA+LIKMGFPQRA EG IS
Sbjct: 6 FLLIQYCFITNISVLYLLLQSHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGVIS 65
Query: 291 ICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT 350
ICSCHKE K+G GYTCPRCKARVCELPTECRICGL LVSSPHLARSYHHLFPI PFDE +
Sbjct: 66 ICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFDEVS 125
Query: 351 PSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
S LN+ H S CFGCQ+SLL GNK LCVACPKCK+HFCL+CDIYIHESLHNCPGC
Sbjct: 126 LSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHESLHNCPGC 185
Query: 411 ESLRQSNPVVANE 423
ES R S V E
Sbjct: 186 ESFRHSKIVSVTE 198
>gi|58271290|ref|XP_572801.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. neoformans JEC21]
gi|57229060|gb|AAW45494.1| RNA polymerase II transcription factor, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 460
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 169/444 (38%), Positives = 250/444 (56%), Gaps = 53/444 (11%)
Query: 7 SRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRR 66
SR + +N + G +AWE Y +SW+ +QEDESG L SA+ R
Sbjct: 29 SRRQARGAAGKGKGKNKDTGRQAWEGEY--QKSWDIVQEDESGSL----ESAVETLLARG 82
Query: 67 RLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQN 126
R R R+L T +++ +IR+++I+IDLS + + D+RP+R V+ + +V E+FDQN
Sbjct: 83 R-RKRALMSDTP-VRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEWFDQN 140
Query: 127 PLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQI 184
PL QIG++ ++D ++ L +GGSPE ++AL KL SG+ S+QN L + G + +
Sbjct: 141 PLGQIGVIAMRDRLSEVLIPMGGSPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHL 200
Query: 185 PSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG 241
PS E+L+++SA+ST DP I + IR S++ LS E+ ICK + + TG
Sbjct: 201 PSTSSLEILVIFSAISTADPDGPITIHNVLDTLATGHIRTSILSLSGEIKICKQIAERTG 260
Query: 242 GTYSVALDESHSKELILEHAPPP-----PAIAEF--AIAS----------------LIKM 278
G + VALD+ H K+L+ E PPP P A A+A+ L+ M
Sbjct: 261 GKFGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGDLMVM 320
Query: 279 GFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYH 338
GFP R G ++C+CH ++ G GY CPRC +++C++PT+C +CGL +VSSPHLARS+
Sbjct: 321 GFPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFW 379
Query: 339 HLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLL-ASGNKAGLCVA-----------CP 386
LFP+A + P + D+ S TCFGC A+ AG+ C
Sbjct: 380 FLFPVANYG---PLSIEDVVE-SSETCFGCDSEFSDATAINAGVAQVEDGVSPTGRYRCA 435
Query: 387 KCKKHFCLECDIYIHESLHNCPGC 410
KCK FC +CD+YIH++LH CPGC
Sbjct: 436 KCKHDFCADCDLYIHDTLHTCPGC 459
>gi|58271288|ref|XP_572800.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. neoformans JEC21]
gi|134114810|ref|XP_773703.1| hypothetical protein CNBH1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256331|gb|EAL19056.1| hypothetical protein CNBH1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229059|gb|AAW45493.1| RNA polymerase II transcription factor, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 460
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 168/444 (37%), Positives = 250/444 (56%), Gaps = 53/444 (11%)
Query: 7 SRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRR 66
SR + +N + G +AWE Y +SW+ +QEDESG L SA+ R
Sbjct: 29 SRRQARGAAGKGKGKNKDTGRQAWEGEY--QKSWDIVQEDESGSL----ESAVETLLARG 82
Query: 67 RLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQN 126
R R R+L T +++ +IR+++I+IDLS + + D+RP+R V+ + +V E+FDQN
Sbjct: 83 R-RKRALMSDTP-VRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEWFDQN 140
Query: 127 PLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQI 184
PL QIG++ ++D ++ L +GG+PE ++AL KL SG+ S+QN L + G + +
Sbjct: 141 PLGQIGVIAMRDRLSEVLIPMGGNPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHL 200
Query: 185 PSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG 241
PS E+L+++SA+ST DP I + IR S++ LS E+ ICK + + TG
Sbjct: 201 PSTSSLEILVIFSAISTADPDGPITIHNVLDTLATGHIRTSILSLSGEIKICKQIAERTG 260
Query: 242 GTYSVALDESHSKELILEHAPPP-----PAIAEF--AIAS----------------LIKM 278
G + VALD+ H K+L+ E PPP P A A+A+ L+ M
Sbjct: 261 GKFGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGDLMVM 320
Query: 279 GFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYH 338
GFP R G ++C+CH ++ G GY CPRC +++C++PT+C +CGL +VSSPHLARS+
Sbjct: 321 GFPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFW 379
Query: 339 HLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLL-ASGNKAGLCVA-----------CP 386
LFP+A + P + D+ S TCFGC A+ AG+ C
Sbjct: 380 FLFPVANYG---PLSIEDVVE-SSETCFGCDSEFSDATAINAGVAQVEDGVSPTGRYRCA 435
Query: 387 KCKKHFCLECDIYIHESLHNCPGC 410
KCK FC +CD+YIH++LH CPGC
Sbjct: 436 KCKHDFCADCDLYIHDTLHTCPGC 459
>gi|440631747|gb|ELR01666.1| hypothetical protein GMDG_00042 [Geomyces destructans 20631-21]
Length = 491
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 159/419 (37%), Positives = 239/419 (57%), Gaps = 40/419 (9%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
E+E AWE RSW+ + E G L + + +R LR T
Sbjct: 50 EKEKQGRRRAAWEDI---QRSWDTVVEGADGSLSSTVEGLLEAGKRQRLLRD------TT 100
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+Q+G+IR+L +++DLS A E D RP+R ++ + +F+ EFF+QNP+SQ+G++ ++D
Sbjct: 101 PLQRGIIRHLILILDLSFAMTEKDLRPTRYLLTLRHATSFISEFFEQNPISQLGILGMRD 160
Query: 139 GVANCLTDLGGSPESHIKALMGKLGCS---GDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
G+A ++ L G+P H+ AL GKL G S+QNAL++ L PS+G REVLI+
Sbjct: 161 GLAKPISPLSGTPTVHLGAL-GKLRTQDPQGSPSLQNALEMARASLFHAPSHGTREVLII 219
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
AL + DPGDI TI +IR S IGL+A++ I +C +T G YSVAL E H +
Sbjct: 220 SGALLSSDPGDIHTTISSLTSDRIRVSAIGLAAQVAILSEICTKTKGDYSVALHEEHFRA 279
Query: 256 LILEHAPPPPAIA-EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
L++ PPP A E +SL+ MGFP R ++++C+CH ++ G GY C RC ++VC
Sbjct: 280 LLMGATTPPPTRAKEQNQSSLLMMGFPSRTVATAVTLCACHSKLTRG-GYLCSRCGSKVC 338
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC------ 368
LP EC CGL L+ S HLARSYHHLFP+ + E + ++ +CF C
Sbjct: 339 SLPAECPACGLTLILSTHLARSYHHLFPLRNWREVS---WSEAAGSGVGSCFACGVGFNK 395
Query: 369 ---------------QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+++++ + +++G AC C +HFC++CD++ HE +HNCPGC+S
Sbjct: 396 PPPRQVVEGKKEGGRREAMMKAVSESGR-YACEVCGEHFCIDCDVFAHEVVHNCPGCQS 453
>gi|390351315|ref|XP_782325.3| PREDICTED: general transcription factor IIH subunit 2-like
[Strongylocentrotus purpuratus]
Length = 500
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/333 (45%), Positives = 216/333 (64%), Gaps = 22/333 (6%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE Y +R+WEALQEDE G L+ + I A+ RRRL R + ++ G++R+L
Sbjct: 11 TWEGDY--ERTWEALQEDEEGSLQATVDDIIQRAK-RRRLEDRP-----SNVRLGMMRHL 62
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+I++D SR+ + D +P+R+ K +E F+ E+FDQNP+SQ+G++T + A LT+LG
Sbjct: 63 FILLDCSRSMEDQDLKPNRLACCTKLLEHFIEEYFDQNPISQVGIITSSNMRAEKLTELG 122
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ HI AL C + S+QNAL+L L +P + RE+L++ +L+TCDPG+
Sbjct: 123 GNPQRHITALEKCNDKPCVKEPSLQNALELAAATLRHMPGHASREILVIMGSLTTCDPGN 182
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I +TIQ K+ IRC VIGL+A++ +C+ L T GTY V LDE+H KEL++EH PPPA
Sbjct: 183 IHDTIQAMKDHSIRCCVIGLAADVRVCRKLATVTHGTYGVILDETHFKELLMEHTIPPPA 242
Query: 267 IAEFAIASLIKMGFPQ------RAGEGSISICSCHKEVK----IGV-GYTCPRCKARVCE 315
S I+MGFPQ ++ + S+C CH + K G GY CP+C+++ CE
Sbjct: 243 RVNTE-PSPIRMGFPQHVIHTDKSKVSAPSMCMCHLDGKNSEGFGTGGYFCPQCQSKYCE 301
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDE 348
LP ECR+CGL LVS+PHLARS+HHLFP+ F+E
Sbjct: 302 LPVECRVCGLTLVSAPHLARSFHHLFPLDRFEE 334
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKA 379
C GL LVS+PHLARS+HHLFP+ F+E + D + C GCQ + +
Sbjct: 397 CLSSGLTLVSAPHLARSFHHLFPLDRFEEF---KREDHDHPDSLFCQGCQSHI-----RD 448
Query: 380 GLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
CPKC FCL+C+++I ESLH+CPGC S R S
Sbjct: 449 QTAYRCPKCSNVFCLDCELFIQESLHSCPGCASTRPSQ 486
>gi|393217828|gb|EJD03317.1| TFIIH basal transcription factor complex, subunit SSL1 [Fomitiporia
mediterranea MF3/22]
Length = 481
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/436 (35%), Positives = 241/436 (55%), Gaps = 65/436 (14%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE +Y RSW+ ++EDESG L+ N + R R R L + I++ +IR+L
Sbjct: 55 AWEATYT--RSWDTVREDESGSLQGAVN------ELLARGRRRRLLFPSTAIRRTIIRHL 106
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+VIDLS + + D RP+R + AF+ E+FDQNPL QIG++ ++ G+A + ++
Sbjct: 107 ILVIDLSASMLDRDMRPTRFDLALSTARAFIVEWFDQNPLGQIGVIGMRSGIAERIGEMS 166
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+P +K++ + L +G+ S+QNA+++ ++ +P++ RE++IL+ +L+T DPG+
Sbjct: 167 SNPHDVLKSIQDRHRLEPAGEPSLQNAVEMARSTMSHLPTHSSREIVILFGSLTTVDPGN 226
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I ET+ C +IR +++ L+AEM IC+ +C +TGG + V+L+E H ++L+ E PPP
Sbjct: 227 IHETLDACIRDRIRINLVALAAEMKICRDMCGKTGGQFGVSLNEGHFRDLLFELIPPPAQ 286
Query: 267 IA----------------EFAIASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRC 309
A A L+ MGFP R E S ++C CH E+K G+ CPRC
Sbjct: 287 RALSRAAGAGASASAGSGGNPAADLMMMGFPTRLPEASPPALCVCHSELK-SAGFVCPRC 345
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ 369
A+VC++PT+C +CGL +VSSPHLARSYHHLFP+ P+ T + LN + C GC
Sbjct: 346 AAKVCDVPTDCDVCGLMIVSSPHLARSYHHLFPVKPYQAVTDTELNS--TTASRACHGCA 403
Query: 370 QSL--LASGNKAGLCVA---------------------------------CPKCKKHFCL 394
++SG CP CK FC
Sbjct: 404 SPFPPVSSGTSTSTNPVTGSAAGTGAAEGASAAGTSTVTSDGMSPLGRYRCPDCKNDFCT 463
Query: 395 ECDIYIHESLHNCPGC 410
ECD+++H+ +H CPGC
Sbjct: 464 ECDVFVHDVVHCCPGC 479
>gi|45188211|ref|NP_984434.1| ADR338Cp [Ashbya gossypii ATCC 10895]
gi|44983055|gb|AAS52258.1| ADR338Cp [Ashbya gossypii ATCC 10895]
gi|374107649|gb|AEY96557.1| FADR338Cp [Ashbya gossypii FDAG1]
Length = 469
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 165/404 (40%), Positives = 226/404 (55%), Gaps = 27/404 (6%)
Query: 21 ENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARI 80
+ +NGG AWE RSW+ ++ D G N A A + RS
Sbjct: 77 QGVNGGY-AWEDEI--QRSWDLVKVDNEG------NMAALVASIIEARKKRSANKDITPY 127
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
Q+G+IR + +VID S A E D RP+R + + FV FFDQNP+SQ+ +V +++G+
Sbjct: 128 QRGIIRTMILVIDCSEAMLERDLRPNRHAMTVQYAIDFVHNFFDQNPISQLCIVAMRNGM 187
Query: 141 ANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSA 198
A ++ + G+P+ HI+AL K G+ S+QNAL++ GLL +PS+ REVLI++ A
Sbjct: 188 AQLVSQVSGNPQEHIEALKAVRKQEPKGNPSLQNALEMARGLLLHVPSHCTREVLIVFGA 247
Query: 199 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET----GGTYSVALDESHSK 254
LS+ DPGDI +TI IR VIGLSA++ ICK LC++T Y V L+E+H K
Sbjct: 248 LSSTDPGDIHQTIASLANEHIRTRVIGLSAQVAICKELCKQTNYGDNSYYGVILNETHFK 307
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
+L E P P +L+KMGFP R E + S C+CH + G GY CP CK++VC
Sbjct: 308 DLFAEAVVPLPVNKMNKGFTLVKMGFPTRIFEDTPSFCTCHSRLVHG-GYFCPNCKSKVC 366
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-- 372
LP C C L L+ S HLARSYHHL P+ F E P + CF CQ+
Sbjct: 367 SLPIVCPCCDLMLILSTHLARSYHHLMPLKVFQE-LPVDI----QFPTENCFSCQKKFPR 421
Query: 373 LASGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
L + L + C CK FC++CD+++HE LHNCPGCES
Sbjct: 422 LRNYKTQDLLTSSRYRCENCKCDFCIDCDVFVHEILHNCPGCES 465
>gi|345568422|gb|EGX51316.1| hypothetical protein AOL_s00054g386 [Arthrobotrys oligospora ATCC
24927]
Length = 542
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/440 (37%), Positives = 235/440 (53%), Gaps = 64/440 (14%)
Query: 28 EAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRY 87
E WE RSW+ + E G + + + +R LR T IQ+G+IR+
Sbjct: 59 EKWEDI---QRSWDNVVEGADGSIAGTVIGLLEATKRKRLLRD------TTPIQRGIIRH 109
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
L +++DLS A E D RP+R ++ + FV E+F+QNP+SQ+ ++ + DG+A ++D+
Sbjct: 110 LVLILDLSSAMLEKDLRPTRFLLTLRYARDFVTEYFEQNPISQLSIIGMHDGLALRISDM 169
Query: 148 GGSPESHIKALMGK---LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204
GG+P H+ AL K + G SS+QNAL++ L P++G RE+L+++ ALS+ DP
Sbjct: 170 GGNPADHLTALQEKAFTVEPKGASSLQNALEMGRAELFHTPTHGTREILLIFGALSSSDP 229
Query: 205 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILEH 260
GDI +TI E +I+ ++GL+A++ +C+ L +T Y V LDE H +EL++
Sbjct: 230 GDIHDTINSLIEDRIQVRIVGLAAQVAVCRELVMKTNDGDDSAYGVILDEGHYRELMMAA 289
Query: 261 APPP-PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTE 319
PP E ++ SL+ MGFP R E S+CSCH + G GY CPRC A+VC LPTE
Sbjct: 290 TTPPVTKTEEKSVPSLLMMGFPSRTVEKHESLCSCHSNLTKG-GYICPRCTAKVCFLPTE 348
Query: 320 CRICGLQLVSSPHLARSYHHLFPI-----APFDEA------------------------- 349
C CGL L+ S HLARSYHHLFP+ P+ EA
Sbjct: 349 CPCCGLTLILSTHLARSYHHLFPLKNWVEVPWSEAHTSTHCWSCQSPFPTNQSQTSSIKI 408
Query: 350 ---TPSRLNDLHNISRSTCFGCQQSLLASGNKAGLC-----------VACPKCKKHFCLE 395
PS SRS G + A N AC CK HFC++
Sbjct: 409 KIRNPSTTAATATASRSN--GATTTSTAPKNDHQQQQQQPPQPPTQRYACTDCKTHFCID 466
Query: 396 CDIYIHESLHNCPGCESLRQ 415
CDI+ HESLHNCPGC+SL +
Sbjct: 467 CDIFTHESLHNCPGCQSLSE 486
>gi|254577733|ref|XP_002494853.1| ZYRO0A11176p [Zygosaccharomyces rouxii]
gi|238937742|emb|CAR25920.1| ZYRO0A11176p [Zygosaccharomyces rouxii]
Length = 477
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/426 (39%), Positives = 239/426 (56%), Gaps = 29/426 (6%)
Query: 2 KNSERSRLNGE-AEEEDDEEENLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSA 58
K S+ + NG A + L G G AWE RSW+ + D+ G D +A
Sbjct: 61 KASKDPKRNGRSARRNKTSNKALQGASGGYAWEDEIK--RSWDLVPADDEG-----DMAA 113
Query: 59 IYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAF 118
+ + R + R+ + Q+G+IR L +V+D S A E D RP+R ++ + F
Sbjct: 114 LAASIVESR-KKRTAQKNISPYQRGIIRTLILVLDCSEAMLEKDMRPNRHAMLVQYSIDF 172
Query: 119 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDL 176
V EFFDQNP+SQIG+V++++G+A+ ++ + G+P+ H+ AL + K G+ S+QNAL++
Sbjct: 173 VHEFFDQNPISQIGIVSMRNGLAHMISQVSGNPQDHVDALKSIRKQEPKGNPSLQNALEM 232
Query: 177 VHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 236
GLL +P + +EVLI++ +LS+ DPGDI TI + IR +IGLSA++ IC+ L
Sbjct: 233 TRGLLLPVPPHCTKEVLIVFGSLSSTDPGDIHLTIGSLVQEGIRVKIIGLSAQVAICREL 292
Query: 237 CQETG----GTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISIC 292
C+ T Y V LDE H KEL E P P +L+KMGFP R E + + C
Sbjct: 293 CKATNYGDESFYKVPLDEIHCKELFAEAVTPLPVNKINKGFTLVKMGFPTRIFEEAPTFC 352
Query: 293 SCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS 352
+CH ++ G GY CP C+++VC LP C C L L+ S HLARSYHHL P+ F E
Sbjct: 353 ACHSKLLYG-GYFCPNCQSKVCSLPMVCPCCDLMLILSTHLARSYHHLMPLKTFSEVPTG 411
Query: 353 RLNDLHNISRSTCFGCQQSLLASGN-KAGLCVA-----CPKCKKHFCLECDIYIHESLHN 406
++ N CF CQ N K G + C C K FC++CD++IHE LHN
Sbjct: 412 QVFPTEN-----CFSCQVRFPTVKNHKTGELLTSSRYRCEDCLKDFCIDCDVFIHEILHN 466
Query: 407 CPGCES 412
CPGCES
Sbjct: 467 CPGCES 472
>gi|340518378|gb|EGR48619.1| predicted protein [Trichoderma reesei QM6a]
Length = 480
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 183/444 (41%), Positives = 246/444 (55%), Gaps = 64/444 (14%)
Query: 3 NSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEA-LQEDESGFLRPIDNSAIYH 61
N+ R + + A+ + D NGG +AWE+S R+WE L E+ G L N A Y
Sbjct: 29 NAARPKGSKPAKRKRDR----NGGSKAWEQSR---RTWETDLPEESDGML----NLAGYE 77
Query: 62 AQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVRE 121
A+ RR L T +Q+G+IR+L +V+D+S A AE D P+R + AFVRE
Sbjct: 78 AERRR-----RLLRDTTPLQRGIIRHLVLVLDMSFAMAEKDLLPTRYRLALSYAAAFVRE 132
Query: 122 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHG 179
+F+QNP+SQ+ +V ++DGVA ++D+GG+P H++ L G SG+ S+QNAL++ G
Sbjct: 133 YFEQNPISQLAIVGMRDGVALRVSDMGGNPAEHLERLREYEGQDPSGNPSLQNALEMCRG 192
Query: 180 LLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQE 239
L PS+G REVLI+Y AL + DPGDI +TI +IR SV+GLSA++ IC LC
Sbjct: 193 ALFHAPSHGTREVLIIYGALLSSDPGDIHDTINNLVAERIRVSVVGLSAQVAICAELCSR 252
Query: 240 TG----GTYSVALDESHSKELILEHAPPP-PAIAEFAIASLIKMGFPQR--AGEGSISIC 292
T Y+VA+DE+H KEL L PP E + ASL+ MGFP R A G+ S C
Sbjct: 253 TNVGDDSQYNVAMDETHFKELFLALTTPPVNRTKEQSTASLLMMGFPSRTLAPGGTSSYC 312
Query: 293 SCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI-----APFD 347
+CH + GY C RC +VC LP+EC CGL L+ S HLARSYHHLFP+ P+
Sbjct: 313 ACHSQ-PCREGYLCTRCGVKVCRLPSECPACGLTLILSTHLARSYHHLFPLRNWVEVPWA 371
Query: 348 EATPSRLNDLHNISRST-CFGCQQSL--------------------LASGNKAGLCVACP 386
EA +RST CF CQ A G C
Sbjct: 372 EA-----------ARSTACFSCQSPFPEPPKANKEKGKDEAAPAKAPAKGVSESGRYKCQ 420
Query: 387 KCKKHFCLECDIYIHESLHNCPGC 410
C HFC++CD++ H +HNCPGC
Sbjct: 421 VCDHHFCIDCDVFAHMVIHNCPGC 444
>gi|408397644|gb|EKJ76784.1| hypothetical protein FPSE_02970 [Fusarium pseudograminearum CS3096]
Length = 469
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 169/421 (40%), Positives = 232/421 (55%), Gaps = 59/421 (14%)
Query: 29 AWERSYADDRSWEA--LQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
AWE S R+WE +ED+ G L + + A+ R+RL T +Q+G+IR
Sbjct: 45 AWEVS---KRTWETGLPEEDQDGVL----SINVLEAEKRKRL-----LRDTTPLQRGIIR 92
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
++ +V+D+S A E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++D
Sbjct: 93 HMVLVLDMSFAMIEKDLLPTRYRLMLSYAVAFVREFFEQNPISQLGIIGMRDGVAVRVSD 152
Query: 147 LGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204
+GG+P H+ L G G+ S+QNAL++ G L PS+G REV I+Y AL + DP
Sbjct: 153 VGGNPAEHLDKLKGLESQDPQGNPSLQNALEMCRGALFHAPSHGTREVFIIYGALLSSDP 212
Query: 205 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET----GGTYSVALDESHSKELILEH 260
GDI ETI +IR S++GLSA + IC LC T G Y++A+DE H +EL L
Sbjct: 213 GDIHETIGNLITDRIRVSIVGLSAHLAICADLCSRTNAGDGSQYNIAMDEVHFRELFLAA 272
Query: 261 APPPPA-IAEFAIASLIKMGFPQRA--GEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
PP E + ASL+ MGFP R G+ S C+CH GY C RC ARVC +P
Sbjct: 273 TTPPVTRTVEQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PCREGYLCTRCGARVCRIP 331
Query: 318 TECRICGLQLVSSPHLARSYHHLFPI-----APFDEATPSRLNDLHNISRSTCFGCQQSL 372
+EC C L L+ S HLARSYHHLFP+ P+ +AT S + CF C
Sbjct: 332 SECPSCDLTLILSTHLARSYHHLFPLRNWIEVPWAKATTS----------AGCFSCLAPF 381
Query: 373 --------------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
A G AC C +HFC++CD++ HE +HNCPGC+S
Sbjct: 382 PEPPKNKGHDKSKEDSGAPKTAKGVSESGRYACEVCGQHFCIDCDVFAHEIVHNCPGCQS 441
Query: 413 L 413
L
Sbjct: 442 L 442
>gi|378727991|gb|EHY54450.1| transcription initiation factor TFIIH subunit H2, variant
[Exophiala dermatitidis NIH/UT8656]
gi|378727992|gb|EHY54451.1| transcription initiation factor TFIIH subunit H2 [Exophiala
dermatitidis NIH/UT8656]
Length = 464
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 150/406 (36%), Positives = 230/406 (56%), Gaps = 28/406 (6%)
Query: 32 RSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIV 91
+++ R+W+ L E G + + + +R L+ T +Q+G+IR+L ++
Sbjct: 36 QNFEVTRTWDLLTEGADGTITGAVEGLLEAGKRKRLLKD------TTPLQRGIIRHLILI 89
Query: 92 IDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 151
ID+S A E D RP+R ++ E+F+REFF+QNP+SQ+G+V ++DG+A ++D+ G+P
Sbjct: 90 IDMSIAMMEKDLRPTRYLLTLMYTESFIREFFEQNPISQLGIVGMRDGIAVRVSDMSGNP 149
Query: 152 ESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIME 209
+H+ A+ + K G S++NAL++ L PS+G REVL+++ AL T DPGDI
Sbjct: 150 TAHLAAIQKIRKQEPKGQPSLENALEMARAALFHAPSHGTREVLLIFGALHTSDPGDIHR 209
Query: 210 TIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILE-HAPPP 264
TI KIR +VIGL+A++ +C L +T Y V L E H +EL++ PP
Sbjct: 210 TIDNLVTDKIRATVIGLAAQVAVCAELVSKTNNGDLSNYGVVLHEQHYRELLMAVTTPPV 269
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICG 324
+ + + +SL+ MGFP R E S+C+CH GY C RC +VC LP+EC +CG
Sbjct: 270 TSESTKSASSLLMMGFPSRTVEDYPSLCACHTNPSRD-GYLCSRCSTKVCGLPSECPVCG 328
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC---------QQSLLAS 375
L L+ S HLARSYHHLFP+ + E S+ CF C ++ A+
Sbjct: 329 LTLILSTHLARSYHHLFPLVNWLEVPWSQA-----YRSKACFACLKQFPVVPPREQWTAA 383
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVA 421
CP C HFC++CD++ HE +HNCPGC+S+R ++
Sbjct: 384 KTTTSGRYECPVCHHHFCIDCDLFAHEVVHNCPGCQSVRMQTSLMG 429
>gi|296817267|ref|XP_002848970.1| suppressor of stem-loop protein 1 [Arthroderma otae CBS 113480]
gi|238839423|gb|EEQ29085.1| suppressor of stem-loop protein 1 [Arthroderma otae CBS 113480]
Length = 484
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 240/414 (57%), Gaps = 38/414 (9%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
GG E WE + R+WE L E G + + + + +R L+ T +Q+G+
Sbjct: 59 GGAE-WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKD------TTPLQRGI 107
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR++ +V+DLS A AE D RP+R ++ + + FV EFF+QNP+SQ+G++ +KDGVA +
Sbjct: 108 IRHMILVLDLSFAMAEKDLRPTRYLLTLRYAQKFVLEFFEQNPISQLGIMGMKDGVAVQV 167
Query: 145 TDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
+++ G+P HI AL + G S+QNAL++ G L P++G REV+I+ AL +
Sbjct: 168 SEMSGNPTEHILALHALRSEDPKGLPSLQNALEMARGSLYHTPTHGTREVIIILGALLSS 227
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELIL 258
DPGDI +TI K+R +IGL+A++ IC+ LC +T +Y VA+DE H +L+L
Sbjct: 228 DPGDIRQTITSLVADKVRVGIIGLAADVAICRELCAKTNDGNDSSYGVAIDEKHLWDLLL 287
Query: 259 EHAPPPPAIAE-FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+ PP ++ ++ +SL+ MGFP R E S+C+CH + G GY C RC ++VC LP
Sbjct: 288 DVTTPPVTYSQRYSSSSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLP 346
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC--------- 368
EC C L L+ S HLARSYHHLFP+ + E R + +CF C
Sbjct: 347 AECPTCNLTLILSTHLARSYHHLFPLINWVEVPWKRAS-----KSVSCFACGNVFPPVPP 401
Query: 369 -QQSLLASGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417
++ G+ G+ V+ C C HFC++CD++ HE +HNCPGC+S + N
Sbjct: 402 REKWDRQEGSVKGMSVSSRYECTVCHHHFCIDCDVFAHEIVHNCPGCQSGKPLN 455
>gi|281337668|gb|EFB13252.1| hypothetical protein PANDA_003972 [Ailuropoda melanoleuca]
Length = 364
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 213/346 (61%), Gaps = 24/346 (6%)
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
+++ G++R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+G++ K
Sbjct: 20 GQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIVTK 79
Query: 138 DGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
A LT+L G+P HI +L + C G+ S+ N+L + L +P + REVLI+
Sbjct: 80 SKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLII 139
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
+S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KE
Sbjct: 140 FSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKE 199
Query: 256 LILEHAPPPPAIAEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GY 304
L+ H PPPA + SLI+MGFPQ + S S+ + G+ GY
Sbjct: 200 LLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGY 258
Query: 305 TCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST 364
CP+C+A+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E N
Sbjct: 259 FCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEHN-----GEKF 313
Query: 365 CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C+GCQ L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 314 CYGCQGEL-----KDQHVYVCAVCQTVFCVDCDVFVHDSLHCCPGC 354
>gi|315049235|ref|XP_003173992.1| stem-loop protein 1 suppressor [Arthroderma gypseum CBS 118893]
gi|311341959|gb|EFR01162.1| stem-loop protein 1 suppressor [Arthroderma gypseum CBS 118893]
Length = 487
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 159/411 (38%), Positives = 241/411 (58%), Gaps = 40/411 (9%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
+GG E WE + R+WE L E G + +S + + +R L+ T +Q+G
Sbjct: 59 HGGAE-WEVA----RTWETLVEGADGTITATVDSLLEADKRKRLLKD------TTPLQRG 107
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR++ +V+DLS A AE D RP+R ++ + + FV+EFF+QNP+SQ+G++ +KDG+A
Sbjct: 108 IIRHMILVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQ 167
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++++ G+P H+ AL + G S+QNAL++ G L PS+G REV+I+ AL +
Sbjct: 168 ISEMSGNPTEHMLALHALRSEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLS 227
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI K+R +IGL+A++ +C+ +C +T +Y VA+DE H +L+
Sbjct: 228 SDPGDIHQTITSLVADKVRVGIIGLAADVAVCREICAKTNDGNDSSYGVAIDEKHLWDLL 287
Query: 258 LEHAPPPPAIAE-FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCEL 316
L+ PP ++ ++ +SL+ MGFP R E S+C+CH + G GY C RC ++VC L
Sbjct: 288 LDVTTPPITYSQRYSSSSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSL 346
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSLLAS 375
P EC C L L+ S HLARSYHHLFP+ + E R SRS +CF C A
Sbjct: 347 PAECPTCNLTLILSTHLARSYHHLFPLINWVEVPWKR------ASRSISCFACGNLFPAV 400
Query: 376 GNK----------AGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+ G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 401 PPRDKWDKRDKSIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|212537907|ref|XP_002149109.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
marneffei ATCC 18224]
gi|210068851|gb|EEA22942.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
marneffei ATCC 18224]
Length = 453
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 155/407 (38%), Positives = 238/407 (58%), Gaps = 33/407 (8%)
Query: 33 SYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVI 92
++ R+WE++ E G + + + +R LR T +Q+G+IR+L +V+
Sbjct: 40 TFEVSRTWESVVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVL 93
Query: 93 DLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE 152
DLS++ AE D RP+R ++ + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G+P
Sbjct: 94 DLSQSMAEKDIRPTRYLLALRYAQEFVIEFFEQNPISQLGVIGMRDGLAVRISDMSGNPT 153
Query: 153 SHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMET 210
HI A+ + G S+QNAL++ G L PS+G REVLI++ +L + DPGDI +T
Sbjct: 154 DHITAIHALRPDDPKGLPSLQNALEMARGALFHTPSHGTREVLIVFGSLLSSDPGDIHQT 213
Query: 211 IQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPA 266
++ KIR ++GL+A++ IC+ LC +T G Y VAL+E H +EL+++ PP A
Sbjct: 214 LKSLIADKIRVGIVGLAAQVAICRELCAKTNGGDDSVYGVALNEQHFRELMMDVTIPPAA 273
Query: 267 IA-EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGL 325
+ + ++L+ MGFP R E S+C+CH + G GY C RC +VC LP EC CGL
Sbjct: 274 YSYRKSSSALLMMGFPSRTVESFPSLCACHSKPSCG-GYLCSRCGNKVCGLPAECPSCGL 332
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC---------QQSLLASG 376
L+ S HLARSYHHLFP+ + E R + + C+ C A
Sbjct: 333 TLILSTHLARSYHHLFPLINWVEVPWKR-----ALRSTNCYACGIQFPTVPPADQWGAFE 387
Query: 377 NKA-GLCVA----CPKCKKHFCLECDIYIHESLHNCPGCESLRQSNP 418
N+A G+ V+ C C HFC++CD++ HE +HNCPGC+S P
Sbjct: 388 NQAKGMSVSSRYECSACHNHFCIDCDLFAHEIVHNCPGCQSTNFMKP 434
>gi|347831479|emb|CCD47176.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 478
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/420 (38%), Positives = 242/420 (57%), Gaps = 41/420 (9%)
Query: 19 EEENLNGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVAT 77
+E+ NGG + ++ D RSW+ + E G + + A R+RL T
Sbjct: 44 KEKAANGGGNRRKAAWEDIQRSWDTVVEGADGSINST-VEGLREANKRKRL-----LRDT 97
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
+Q+G+IR+ +++DLS A E D RP+R ++ + FV E+F+QNP+SQ+G++ ++
Sbjct: 98 TPLQRGIIRHFILILDLSFAMTEKDMRPTRYLLTIRYASEFVTEYFEQNPISQLGIIGMR 157
Query: 138 DGVANCLTDLGGSPESHI---KALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
DG+A ++D+ G+P HI KAL G G+ S+QNAL++ L PS+G RE+LI
Sbjct: 158 DGIAVRISDMSGNPTEHIERLKALRVDQG-QGNPSLQNALEMSRAALFHAPSHGTREILI 216
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDE 250
+Y AL + DPGDI ETI +IR S++GL+A++ IC LC T YSVAL+E
Sbjct: 217 IYGALLSSDPGDIHETISSLITDRIRVSIVGLAAQVAICAELCSRTNAGDDTAYSVALNE 276
Query: 251 SHSKELILEHAPPPPA-IAEFAIASLIKMGFPQRAGE--GSISICSCHKEVKIGVGYTCP 307
H ++L++ PP + + +SL+ MGFP R + S+S C+CH ++ G GY C
Sbjct: 277 EHFRQLMMATTTPPVTRTKKQSQSSLLMMGFPSRTLDPGKSMSFCACHGKLSRG-GYLCS 335
Query: 308 RCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST-CF 366
RC+++VC LP EC CGL L+ S HLARSYHHLFP+ + E + +S C+
Sbjct: 336 RCESKVCSLPAECPACGLTLILSTHLARSYHHLFPLRNWAEVL------WKDAGKSKGCY 389
Query: 367 GCQQSL--------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
GCQ + L +++G AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 390 GCQVTFPQRDEHEKSASEQPLKGMSESGR-YACEVCGNHFCIDCDVFAHEVVHNCPGCQS 448
>gi|207343219|gb|EDZ70748.1| YLR005Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 371
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/370 (41%), Positives = 214/370 (57%), Gaps = 21/370 (5%)
Query: 58 AIYHAQYRRRLRGRSLTVATARI---QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQ 114
I+H + R A I Q+G+IR L + +D S A E D RP+R ++ +
Sbjct: 3 GIWHLLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQY 62
Query: 115 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQN 172
FV EFFDQNP+SQ+G++ +++G+A ++ + G+P+ HI AL + K G+ S+QN
Sbjct: 63 AIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQN 122
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
AL++ GLL +P++ REVLI++ +LST DPGDI +TI KIR V+GLSA++ I
Sbjct: 123 ALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAI 182
Query: 233 CKHLCQETG----GTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGS 288
CK LC+ T Y + LDE+H KEL E P P +L+KMGFP R E +
Sbjct: 183 CKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTLVKMGFPTRIFEDT 242
Query: 289 ISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE 348
+ CSCH ++ G GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F E
Sbjct: 243 PTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAE 301
Query: 349 ATPSRLNDLHNISRSTCFGCQQSL-LASGNKAGLCVA-----CPKCKKHFCLECDIYIHE 402
+ CF CQ + +K G + C CK+ FC++CD++IHE
Sbjct: 302 VPTTE-----KFRSEDCFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHE 356
Query: 403 SLHNCPGCES 412
LHNCPGCES
Sbjct: 357 ILHNCPGCES 366
>gi|156050059|ref|XP_001590991.1| hypothetical protein SS1G_07615 [Sclerotinia sclerotiorum 1980]
gi|154692017|gb|EDN91755.1| hypothetical protein SS1G_07615 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 479
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/421 (38%), Positives = 241/421 (57%), Gaps = 45/421 (10%)
Query: 20 EENLNGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAI---YHAQYRRRLRGRSLTV 75
E+ NGG ++ D RSW+ + E G + NSA+ A R+RL
Sbjct: 45 EKATNGGGNRRRAAWEDIQRSWDTVVEGADGSI----NSAVEGLREANKRKRL-----LR 95
Query: 76 ATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVT 135
T +Q+G+IR+L +++DLS + E D RP+R ++ + FV E+F+QNP+SQ+G++
Sbjct: 96 DTTPLQRGIIRHLILILDLSFSMTEKDMRPTRYLLTLRYASEFVTEYFEQNPISQLGIIG 155
Query: 136 VKDGVANCLTDLGGSPESHI---KALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
++DG+A ++D+ G+P HI K+L G G+ S+QNAL++ L PS+G RE+
Sbjct: 156 MRDGIAVRISDMSGNPTEHIERLKSLRVDQG-QGNPSLQNALEMSRAALFHAPSHGTREI 214
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVAL 248
LI+Y AL T DPGDI ETI +IR S++GL+A++ IC +C T YSVAL
Sbjct: 215 LIIYGALLTSDPGDIHETISSLIADRIRVSIVGLAAQVAICAEICSRTNAGDDTAYSVAL 274
Query: 249 DESHSKELILEHAPPPPA-IAEFAIASLIKMGFPQRA-GEG-SISICSCHKEVKIGVGYT 305
+E H ++L++ PP + + +SL+ MGFP R G G S+S C+CH ++ G GY
Sbjct: 275 NEEHFRQLMMATTTPPVTRTKKQSHSSLLMMGFPSRTLGPGKSMSFCACHGKLSRG-GYL 333
Query: 306 CPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTC 365
C RC ++VC LP EC CGL L+ S HLARSYHHLFP+ + E C
Sbjct: 334 CSRCGSKVCSLPAECPACGLTLILSTHLARSYHHLFPLRNWVEVLWKDAGKTR-----AC 388
Query: 366 FGCQQSL--------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
+GCQ L S +++G AC C HFC++CD++ H+ +HNCPGC+
Sbjct: 389 YGCQAPFPRRDEHEKGAPEPGLKSMSESGR-YACEVCGNHFCIDCDVFAHDVVHNCPGCQ 447
Query: 412 S 412
S
Sbjct: 448 S 448
>gi|327301499|ref|XP_003235442.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton rubrum CBS
118892]
gi|326462794|gb|EGD88247.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton rubrum CBS
118892]
Length = 489
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/405 (38%), Positives = 235/405 (58%), Gaps = 39/405 (9%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE + R+WE L E G + + + + +R LR T +Q+G+IR++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLRD------TTPLQRGIIRHMI 113
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+DLS A AE D RP+R ++ + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G
Sbjct: 114 LVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSG 173
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P H+ AL + G S+QNAL++ G L PS+G REV+I+ AL + DPGDI
Sbjct: 174 NPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDI 233
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILEHAPP 263
+TI K+R +IGL+A++ IC+ +C +T +Y VA+DE H +L+L+ P
Sbjct: 234 HQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTP 293
Query: 264 PPAIAE-FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRI 322
P ++ ++ SL+ MGFP R E S+C+CH + G GY C RC ++VC LP EC
Sbjct: 294 PVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPT 352
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSLLASGNK--- 378
C L L+ S HLARSYHHLFP+ + E R SRS +CF C A +
Sbjct: 353 CNLTLILSTHLARSYHHLFPLINWVEVPWKR------ASRSVSCFACGNPFPAVPPRDKW 406
Query: 379 -------AGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 407 DMRDRSIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|256075586|ref|XP_002574099.1| btf [Schistosoma mansoni]
gi|360045424|emb|CCD82972.1| putative btf [Schistosoma mansoni]
Length = 423
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/418 (38%), Positives = 236/418 (56%), Gaps = 43/418 (10%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTV-ATARIQKGLIRYL 88
WE Y +++W A++EDESG L I+ A + R + R + V +T ++ G++R+L
Sbjct: 14 WESGY--EKTWSAIREDESGRLVTTLEQLIHDAHTQIRKKRRRIGVGSTGFVRLGMMRHL 71
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++IDLS+A E D +P+R++ K FVRE+FDQNP+SQ+G++ D A LT+L
Sbjct: 72 FLIIDLSQAMNEQDLKPNRLICTVKAACTFVREYFDQNPISQLGIIVTSDRRAERLTELS 131
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P H+ AL + C G+ S+QNAL L L + H E+++L ++L+TCDP D
Sbjct: 132 GNPRPHLAALQSLYTRTCIGEPSLQNALLLAESRLKY--TIHHNEIVVLMASLTTCDPSD 189
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I +TI+ ++IRCSVI L+ E+F+ + L Q T GT+ V +DE H K ++ + PPP A
Sbjct: 190 IHQTIKSLSSNRIRCSVISLAVEVFVYRALAQLTQGTFHVIMDELHLKNVLKDLVPPPVA 249
Query: 267 IAEFAIASLIKMGFPQR----AGEGSISICSCHKEVKIGVG---------YTCPRCKARV 313
E A+LI+MGFP ++ C CH K Y CPRC +
Sbjct: 250 AIETE-ANLIRMGFPHSETFDLDRFAVKRCMCHLSNKPTNDKTDTTTNPHYACPRCHSAY 308
Query: 314 CELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS---RLNDLHNISRST------ 364
CELP EC +CGL LV++PHLAR+YHHLFP+ F+ S L N +S
Sbjct: 309 CELPVECNVCGLTLVAAPHLARAYHHLFPLDLFEPVNGSGSFSETSLDNQEKSKETIDSA 368
Query: 365 ---------CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413
CFGC +++ G CPKCK FC CD +H+S+H+CPGC +L
Sbjct: 369 DSVDHQQRLCFGC--NVIIPSKIPG--YQCPKCKFIFCHSCDAVLHDSIHSCPGCLTL 422
>gi|341038582|gb|EGS23574.1| putative transcription factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 534
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 172/463 (37%), Positives = 240/463 (51%), Gaps = 94/463 (20%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE RSWE + E E G I A+ A+ RRRL T +Q+G+IR+L
Sbjct: 56 AWEDI---QRSWENVVETEDG---SITIEALIEAEKRRRL-----MRDTTPLQRGIIRHL 104
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+D+S A AE D P+R ++ FVRE+F+QNP+SQ+G++ ++DG+A ++D+
Sbjct: 105 VLVLDMSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQNPISQMGIIAMRDGIAVRVSDMS 164
Query: 149 GSPESHIKAL---MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
G+P HI+ L G+ S+QNAL++ G L PS+G REVLI+Y AL + DPG
Sbjct: 165 GNPADHIERLRFWAEHQEPQGNPSLQNALEMCRGALYHTPSHGTREVLIVYGALLSSDPG 224
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILEHA 261
DI ETI + +IR +V+GL+A++ +C LC T TY+VAL E H +EL L
Sbjct: 225 DIHETISNLVKDRIRVTVVGLAAQVAVCAELCTRTNHGDDSTYAVALHEQHFRELFLAAT 284
Query: 262 PPPPAIAEFAI---------------ASLIKMGFPQR--AGEGSISICSCHKEVKIGVGY 304
PPPA A A ASL+ MGFP R A +S+C+CH GY
Sbjct: 285 IPPPATASSATDKNGANGNANAASTDASLLMMGFPSRTLASASHVSLCACHSRPS-REGY 343
Query: 305 TCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST 364
C RC+A+VC LP EC CGL L+ S HLARSYHHLFP+ + E + + +
Sbjct: 344 LCTRCRAKVCRLPAECPACGLTLILSTHLARSYHHLFPLKGWVEVSWAEARKSKQVG--- 400
Query: 365 CFGC---------------------------------QQSLLASGNKA----GLCVA--- 384
CF C +Q ++ N A G+ +A
Sbjct: 401 CFACLAPFPLPPAPGSEKTGKEPTQKTQGQAQQPPQERQGSSSNSNNAKKTTGISLATAL 460
Query: 385 ---------------CPKCKKHFCLECDIYIHESLHNCPGCES 412
CP C KHFC++CD++ HE +HNCPGC++
Sbjct: 461 PEARAVGVSESGRYKCPTCGKHFCIDCDVFAHEVIHNCPGCQA 503
>gi|50551723|ref|XP_503336.1| YALI0D26862p [Yarrowia lipolytica]
gi|49649204|emb|CAG81542.1| YALI0D26862p [Yarrowia lipolytica CLIB122]
Length = 496
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 175/432 (40%), Positives = 238/432 (55%), Gaps = 45/432 (10%)
Query: 6 RSRLNGEAEEEDDEEENL---NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHA 62
RSR N + EN+ NGG +WE Y RSW+ +QEDE G L + + A
Sbjct: 23 RSRRNQAPKGAGGSVENMKMANGGY-SWEDEY--HRSWDVVQEDEGGSLAG-SVAGLVEA 78
Query: 63 QYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREF 122
+ +R ++ + Q+G+IR L +V+D S A E D RP+R V FV F
Sbjct: 79 RKKRHIKDAT------PFQRGIIRNLILVLDFSFAMKESDLRPNRYQFVINHAIEFVTNF 132
Query: 123 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGL 180
FDQNP+SQ+G++ +++G A ++ LG +P HI AL KL GD S+QNAL++ GL
Sbjct: 133 FDQNPISQLGILGMRNGQAISISTLGSNPNDHINALTAAKKLEPQGDPSLQNALEMARGL 192
Query: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET 240
L +PS+ +EVL++ AL + DPGDI TI K K+R VIGL+A++ ICK LC +T
Sbjct: 193 LFHVPSHCTKEVLVVLGALLSADPGDIHVTIDKLVIDKVRARVIGLAAQVAICKELCVKT 252
Query: 241 ----GGTYSVALDESHSKELILEHAPPPPAIAEFA------IASLIKMGFPQRAGEGSIS 290
Y V L+E H +EL+ E P +AE ASL+ MGFP + E + S
Sbjct: 253 NFGDASYYGVVLNEQHFQELMDEATTP---LAESQQSQSANPASLVLMGFPSKVSEAAPS 309
Query: 291 ICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT 350
+ + + G GY CP+CK +V LPT C CGL L+ S HLARSYHHLFP+APF E
Sbjct: 310 LSASDAALTQG-GYVCPQCKVKVSSLPTVCPCCGLTLILSTHLARSYHHLFPLAPFIE-V 367
Query: 351 PSRLNDLHNISRST-CFGCQQSLLASGNKAGLCVA---------CPKCKKHFCLECDIYI 400
P + N +S C GCQ A A CP C HFC++CD++
Sbjct: 368 PCK-----NAHKSEFCAGCQSKFPVVARDAKNIQADGSMTSRYECPTCHSHFCIDCDVFC 422
Query: 401 HESLHNCPGCES 412
HE LHNC GC++
Sbjct: 423 HEILHNCIGCQA 434
>gi|46123249|ref|XP_386178.1| hypothetical protein FG06002.1 [Gibberella zeae PH-1]
Length = 469
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 173/455 (38%), Positives = 240/455 (52%), Gaps = 61/455 (13%)
Query: 7 SRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEA--LQEDESGFLRPIDNSAIYHAQY 64
S N +A + + AWE S R+WE ED+ G L + + A+
Sbjct: 23 SNDNPQATKGKSSKSRKGDSARAWEVS---KRTWETGLPDEDQDGVL----SINVLEAEK 75
Query: 65 RRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFD 124
R+RL T +Q+G+IR++ +V+D+S A E D P+R ++ AFVREFF+
Sbjct: 76 RKRL-----LRDTTPLQRGIIRHMVLVLDMSFAMTEKDLLPTRYRLMLSYAVAFVREFFE 130
Query: 125 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLN 182
QNP+SQ+G++ ++DGVA ++D+GG+P H+ L G G+ S+QNAL++ G L
Sbjct: 131 QNPISQLGIIGMRDGVAVRVSDVGGNPAEHLDKLKGLESQDPQGNPSLQNALEMCRGALF 190
Query: 183 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG 242
PS+G REV I+Y AL + DPGDI ETI +IR S++GLSA + IC LC T
Sbjct: 191 HAPSHGTREVFIIYGALLSSDPGDIHETIGNLITDRIRVSIVGLSAHLAICADLCSRTNA 250
Query: 243 ----TYSVALDESHSKELILEHAPPP--PAIAEFAIASLIKMGFPQRA--GEGSISICSC 294
Y++A+DE H +EL L PP +A+ + ASL+ MGFP R G+ S C+C
Sbjct: 251 GDESQYNIAMDEVHFRELFLAATTPPVTRTVAQ-STASLLMMGFPSRTLVPNGTTSYCAC 309
Query: 295 HKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI-----APFDEA 349
H GY C RC ARVC +P+EC C L L+ S HLARSYHHLFP+ P+ +A
Sbjct: 310 HNR-PCREGYLCTRCGARVCRIPSECPSCDLTLILSTHLARSYHHLFPLRNWIEVPWAKA 368
Query: 350 TPSRLNDLHNISRSTCFGCQQSL--------------------LASGNKAGLCVACPKCK 389
T S + CF C A G AC C
Sbjct: 369 TTS----------AGCFSCLAPFPEPPKNKGHDKSKEDSGAPKTAKGVSESGRYACEVCG 418
Query: 390 KHFCLECDIYIHESLHNCPGCESLRQSNPVVANEG 424
+HFC++CD++ HE +HNCPGC+SL A G
Sbjct: 419 QHFCIDCDVFAHEVVHNCPGCQSLVSKTDGAAASG 453
>gi|302506370|ref|XP_003015142.1| hypothetical protein ARB_06903 [Arthroderma benhamiae CBS 112371]
gi|291178713|gb|EFE34502.1| hypothetical protein ARB_06903 [Arthroderma benhamiae CBS 112371]
Length = 490
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 234/405 (57%), Gaps = 39/405 (9%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE + R+WE L E G + + + + +R L+ T +Q+G+IR++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKD------TTPLQRGIIRHMI 113
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+DLS A AE D RP+R ++ + + FV+EFF+QNP+SQ+G+ +KDG+A ++++ G
Sbjct: 114 LVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGITGMKDGIAVQISEMSG 173
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P H+ AL + G S+QNAL++ G L PS+G REV+I+ AL + DPGDI
Sbjct: 174 NPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDI 233
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILEHAPP 263
+TI K+R +IGL+A++ IC+ +C +T +Y VA+DE H +L+L+ P
Sbjct: 234 HQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTP 293
Query: 264 PPAIAE-FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRI 322
P ++ ++ SL+ MGFP R E S+C+CH + G GY C RC ++VC LP EC
Sbjct: 294 PVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPT 352
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSLLASGNK--- 378
C L L+ S HLARSYHHLFP+ + E R SRS +CF C A +
Sbjct: 353 CNLTLILSTHLARSYHHLFPLINWVEVPWKR------ASRSVSCFACGNPFPAVPPRDKW 406
Query: 379 -------AGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 407 DMRDRSIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|326468925|gb|EGD92934.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton tonsurans
CBS 112818]
gi|326480095|gb|EGE04105.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton equinum CBS
127.97]
Length = 489
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 235/405 (58%), Gaps = 39/405 (9%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE + R+WE L E G + + + + +R L+ T +Q+G+IR++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKD------TTPLQRGIIRHMI 113
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+DLS A AE D RP+R ++ + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G
Sbjct: 114 LVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSG 173
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P H+ AL + G S+QNAL++ G L PS+G REV+I+ AL + DPGDI
Sbjct: 174 NPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDI 233
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILEHAPP 263
+TI K+R +IGL+A++ IC+ +C +T +Y VA+DE H +L+L+ P
Sbjct: 234 HQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAMDEKHLWDLLLDVTTP 293
Query: 264 PPAIAE-FAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRI 322
P ++ ++ SL+ MGFP R E S+C+CH + G GY C RC ++VC LP EC
Sbjct: 294 PVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPT 352
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSLLASGNK--- 378
C L L+ S HLARSYHHLFP+ + E R SRS +CF C A +
Sbjct: 353 CNLTLILSTHLARSYHHLFPLINWVEVPWKR------ASRSVSCFACGNPFPAVPPRDTW 406
Query: 379 -------AGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 407 DMRDRSIKGMSVSRRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|410948792|ref|XP_003981114.1| PREDICTED: general transcription factor IIH subunit 2 [Felis catus]
Length = 366
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 164/407 (40%), Positives = 226/407 (55%), Gaps = 65/407 (15%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE E + WE Y +R+WE L+EDESG L+ ++ A+ +R
Sbjct: 2 DDEPERT----KRWEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH----- 50
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
+++ G++ +E FV E+FDQNP+SQIG++
Sbjct: 51 -GQVRLGML-----------------------------LEYFVEEYFDQNPISQIGIIVT 80
Query: 137 KDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
K A LT+L G+P HI +L + C G+ S+ N+L + L +P + REVLI
Sbjct: 81 KSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLI 140
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH K
Sbjct: 141 IFSSLTTCDPSNIYDLIKTLKATKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYK 200
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---G 303
EL+ H PPPA + + SLI+MGFPQ + S S+ + G+ G
Sbjct: 201 ELLTHHVSPPPA-SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGG 259
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C+A+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E HN R
Sbjct: 260 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE----HNGER- 314
Query: 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C+GCQ L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 315 FCYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 356
>gi|353237926|emb|CCA69887.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Piriformospora indica DSM 11827]
Length = 386
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 215/338 (63%), Gaps = 29/338 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE SY RSW+ +QEDE G L+ A+ + R R + L T +++ +IR+L
Sbjct: 55 SWEESYT--RSWDVVQEDEEGSLQ----QAV--GDFLARSRRKRLQAPTETVRRTIIRHL 106
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+VIDLS + + D RP+R + + FV E+FDQNPL QIG+V +++GVA + L
Sbjct: 107 ILVIDLSASMTDRDLRPNRFDLSLEYSREFVTEWFDQNPLGQIGIVGMREGVAERICGLS 166
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P +K + + L +G+ S+QNA+++ G ++ +P++ REVL+++ +L+TCDPG+
Sbjct: 167 GNPPDVLKTIADRRNLEPAGEPSLQNAIEMARGSMSHLPTHSSREVLVIFGSLTTCDPGN 226
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP- 265
I ET++ C E KIR SV+ L+AEM IC+ C ETGG + VA++E H ++++ EH PPP
Sbjct: 227 IHETLKSCVEDKIRVSVVALAAEMKICRDFCTETGGLFGVAMNEGHYRDMLFEHVPPPAV 286
Query: 266 ----AIAEFA------------IASLIKMGFPQRAGEGSI-SICSCHKEVKIGVGYTCPR 308
A+A+ + L+ MGFP R E S S+C CH +K GY CPR
Sbjct: 287 RKIEAVAKISNGNGAGPAPAAATGELMMMGFPTRLPETSAPSLCVCHGIMK-SEGYICPR 345
Query: 309 CKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPF 346
C ++VC++PT+C +CGL +VS+PHLARSYHHLFP+ P+
Sbjct: 346 CLSKVCDIPTDCNVCGLVIVSAPHLARSYHHLFPVKPY 383
>gi|389741483|gb|EIM82671.1| Ssl1-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 382
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 226/359 (62%), Gaps = 28/359 (7%)
Query: 6 RSRLNGEAEEEDDEEENLNGGLE----AWERSYADDRSWEALQEDESGFLRPIDNSAIYH 61
RS+ G+ + D +++ LN + AWE +Y RSW+A+QEDE G L +
Sbjct: 20 RSKNKGKQKAVDGKKDKLNDRAKEQAYAWEATYT--RSWDAVQEDEGGSLTGAVQELMAK 77
Query: 62 AQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVRE 121
+ RR L A I++ +IR+L +++DLS + + D RP+R + + FV E
Sbjct: 78 GRRRR------LLAPAAAIRRTIIRHLVLLLDLSASMMDRDLRPTRFDLSLEYAREFVTE 131
Query: 122 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHG 179
+FDQNPL Q+G+V ++ G+ + ++ G+P+ +KAL KL +G+ S+QNA+++
Sbjct: 132 WFDQNPLGQVGVVGMRAGLGERVGEMSGNPQDVLKALSERHKLEPTGEPSLQNAIEMARS 191
Query: 180 LLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQE 239
++ +P++ RE+L+++ +L+T DPG+I +T+Q C + KIR S++ L+AEM IC+ LC +
Sbjct: 192 SMSHLPTHSSREILVIFGSLTTVDPGNIYDTLQSCIKDKIRISIVSLAAEMKICRELCDK 251
Query: 240 TGGTYSVALDESHSKELILEHAPPP-----------PAIAEFAIASLIKMGFPQRAGEGS 288
TGG + VA++E H K+L+ E PPP P A A A L+ MGFP R + S
Sbjct: 252 TGGQFGVAMNEGHFKDLLFELIPPPAQRAIARTTGGPGAANPA-ADLMMMGFPTRLPDTS 310
Query: 289 I-SICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPF 346
+ S+C CH E++ G+ CPRC ++VC++PT+C +CGL +VSSPHLARSYHHLFP+ P+
Sbjct: 311 LPSLCVCHAELR-SAGFLCPRCMSKVCDVPTDCDVCGLMIVSSPHLARSYHHLFPVKPY 368
>gi|346326021|gb|EGX95617.1| TFIIH basal transcription factor complex, subunit SSL1 [Cordyceps
militaris CM01]
Length = 508
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/457 (38%), Positives = 242/457 (52%), Gaps = 69/457 (15%)
Query: 7 SRLNGEAEEEDDEEENLNGGL--------EAWERSYADDRSWEA--LQEDESGFLRPIDN 56
SR +G + +++ GG +AWE+S R+WE +E + G L +
Sbjct: 42 SRTSGGGRSKRRKKDGAGGGASRKKKASAQAWEQS---KRTWETGLPEEGDDGTL----D 94
Query: 57 SAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVE 116
A+ RRRLR T +Q+G+IR+L +V+D+S A A+ D P+R + +
Sbjct: 95 LTTLEAEKRRRLR-----RDTTPLQRGIIRHLVLVLDMSFAMADKDMLPTRHRLTLRYAA 149
Query: 117 AFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNAL 174
AFVREFF+QNP+SQ+G+V ++DGVA ++DLGG+P H++ L + G+ S+QNAL
Sbjct: 150 AFVREFFEQNPISQLGIVGMRDGVAVRVSDLGGNPAEHLERLKALESQDPQGNPSLQNAL 209
Query: 175 DLVHG---------LLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIG 225
++ G + PS+G REVLI+Y AL + DPGDI +T+ +IR S++G
Sbjct: 210 EMCRGCNANEFNVHTNSHAPSHGTREVLIIYGALLSSDPGDIHDTLASLINDRIRVSIVG 269
Query: 226 LSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPA-IAEFAIASLIKMGF 280
LSA + IC LC T Y VA DE H +EL L PP E + ASL+ MGF
Sbjct: 270 LSAHLSICAELCARTNAGDTSQYGVATDEVHFRELFLAATTPPVTRTKEQSTASLLMMGF 329
Query: 281 PQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYH 338
P R A G+ S C+CH G+ C RC RVC LP EC C L L+ S HLARSYH
Sbjct: 330 PSRVLAPGGATSFCACHNR-PCREGFLCTRCGTRVCRLPAECPACALTLILSTHLARSYH 388
Query: 339 HLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSLLASGNKAGLC--------------- 382
HLFP+ + E + + + RS CF CQ A+ G
Sbjct: 389 HLFPLRNWVEVSWA-----DAVGRSPACFACQCPFPAAAATGGDASAREEGQGKKRPTVK 443
Query: 383 -------VACPKCKKHFCLECDIYIHESLHNCPGCES 412
AC C HFC++CD+Y HE +HNCPGC+S
Sbjct: 444 GVSESGRYACEVCGNHFCIDCDVYAHEVIHNCPGCQS 480
>gi|398406773|ref|XP_003854852.1| hypothetical protein MYCGRDRAFT_37615 [Zymoseptoria tritici IPO323]
gi|339474736|gb|EGP89828.1| hypothetical protein MYCGRDRAFT_37615 [Zymoseptoria tritici IPO323]
Length = 445
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 235/433 (54%), Gaps = 48/433 (11%)
Query: 18 DEEENLNGGLEAWERSYADDR-SWEA-------LQEDESGFLRPIDNSAIYHAQYRRRLR 69
D+E NGG RS + SWEA L+E G + + I A R+RL
Sbjct: 14 DDEIATNGGRAMPSRSKGRAQASWEAGATRAWELKEAPDGSIEGV-LGGIEEASKRKRL- 71
Query: 70 GRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
T +Q+G+IR+ +++DLS A E D RP+R ++ AF+REFF+QNP+S
Sbjct: 72 ----LKDTTPLQRGIIRHTILMLDLSVAMLEKDLRPTRHLLTITYTIAFIREFFEQNPIS 127
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCS--GDSSIQNALDLVHGLLNQIPSY 187
Q+G++ +++G+A ++D+ G+P HI A+ G G+ S+QN LD+ L PS+
Sbjct: 128 QLGILGMREGLAIRVSDMSGNPNDHIAAVRALRGTDPKGNPSLQNGLDMARAALYHTPSH 187
Query: 188 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT---- 243
G REV+I+ AL T DPGDI +TI+ C + +IR ++IGL+A+M IC +C++T
Sbjct: 188 GTREVVIILGALLTSDPGDIHDTIKACIKDRIRVTIIGLAAQMHICAEICRKTNAGDDNC 247
Query: 244 YSVALDESHSKELILEHAPPP------PAIAEFAIASLIKMGFPQRAGEGSISICSCHKE 297
Y+VA+DE H +EL++ PP + A+L+ MGFP R E ++C+CH
Sbjct: 248 YNVAVDEVHFRELLMGITTPPVVRSTDAEAQKLNQAALLMMGFPSRIVEEHATLCACHGN 307
Query: 298 VKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDL 357
+ G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+ + E + R D
Sbjct: 308 LTRG-GYLCSRCKAKVCSLPATCPTCDLTLILSTHLARSYHHLFPLQNWVEVSWQRAADR 366
Query: 358 HNISRSTCFGC------------------QQSLLASGNKAGLCVACPKCKKHFCLECDIY 399
CFGC S A G C C+ HFC++CD +
Sbjct: 367 ---GSEQCFGCLSPFPRVHGATNGDDADKTYSKRAEGASESSRYECESCQNHFCIDCDCF 423
Query: 400 IHESLHNCPGCES 412
HE+ HNCPGC S
Sbjct: 424 NHETSHNCPGCTS 436
>gi|452846260|gb|EME48193.1| hypothetical protein DOTSEDRAFT_69968 [Dothistroma septosporum
NZE10]
Length = 449
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 216/375 (57%), Gaps = 37/375 (9%)
Query: 71 RSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQ 130
+ LT T +Q+G+IR+L +++D S A E D RP+R ++ +AFVREF +QNP+SQ
Sbjct: 64 KRLTKDTTPLQRGIIRHLVLLLDFSEAMMEKDLRPTRYLLTLTYAKAFVREFIEQNPISQ 123
Query: 131 IGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYG 188
+G+V +KDG+A ++D+ G+PE HIK L K +G+ S+QN LD+ L PS+G
Sbjct: 124 LGIVGMKDGLAIRVSDMSGNPEDHIKILNEYAKKEPTGNPSLQNGLDMARAALYHTPSHG 183
Query: 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTY 244
REVL++ AL T DPGDI +TI+ C + +IR S+IGL+A+M IC +C++T Y
Sbjct: 184 TREVLVVMGALLTSDPGDIHDTIKACIKDRIRVSIIGLAAQMHICAEICRKTNQGDESCY 243
Query: 245 SVALDESHSKELILEHAPPPPAIAEFA------IASLIKMGFPQRAGEGSISICSCHKEV 298
+VA+D+ +EL+++ PP + A A+L+ MGFP R E ++C+CH ++
Sbjct: 244 NVAIDDVDFRELLMKSTTPPVMRSTDADALRLNQANLLMMGFPSRIVEDKATLCACHGQL 303
Query: 299 KIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLH 358
G GY C RC A+VC LP C C L L+ S HLARSYHHLFP+ + E + R
Sbjct: 304 TRG-GYLCSRCGAKVCSLPATCPTCDLTLILSTHLARSYHHLFPLQNWVEVSWDRARRKG 362
Query: 359 NISRSTCFGCQQSL---------------------LASGNKAGLCVACPKCKKHFCLECD 397
++ C+GC A G C C+ HFC++CD
Sbjct: 363 SVQ---CYGCLAGFPRVPVEYETTQLEVRDKPRRRRAEGASESSRYECETCQNHFCIDCD 419
Query: 398 IYIHESLHNCPGCES 412
+ HE +HNCPGC S
Sbjct: 420 VAAHEMIHNCPGCMS 434
>gi|346979033|gb|EGY22485.1| suppressor of stem-loop protein [Verticillium dahliae VdLs.17]
Length = 461
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/405 (39%), Positives = 229/405 (56%), Gaps = 39/405 (9%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
RSWE ++E G L D A+ RRRL T +Q+G+IR+L +V+D+S A
Sbjct: 45 RSWETVEEGADGSL---DVEGRAEAEKRRRL-----LRDTTPLQRGIIRHLVLVLDMSFA 96
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
AE D P+R+ + + FV+E+F+QNP+SQ+G+V ++DGVA ++++GG+P H++A
Sbjct: 97 MAEKDLLPTRLRLTWRLAREFVKEYFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEA 156
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ ++ G S+QNAL++ G L PS+G REVL++Y AL + DPGDI +TI
Sbjct: 157 INKWAEIDPQGSPSLQNALEMCRGALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLL 216
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF- 270
+IR S++GL+A++ IC+ LC++T Y++ALDE H +EL+L PP +
Sbjct: 217 ADRIRVSIVGLAAQVAICEELCRKTNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQ 276
Query: 271 AIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
+ ASL+ MGFP R A + + C+CH + GY C RC RVC LP EC CGL L+
Sbjct: 277 STASLLMMGFPSRTLAPADTTAYCACHN-TPVREGYLCTRCGTRVCRLPAECPACGLTLI 335
Query: 329 SSPHLARSYHHLFP---------------------IAPFDEATPSRLNDLHNISRSTCFG 367
S HLARSYHHLFP +APF + P R N +
Sbjct: 336 LSTHLARSYHHLFPLRNWVEVPWARAAASRACYACLAPFPDPPPQRRGHRTNGTDGGDKE 395
Query: 368 CQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
G AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 396 AAPVPKQKGVSESSRYACQVCGNHFCIDCDVFAHEVIHNCPGCQS 440
>gi|343426526|emb|CBQ70055.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Sporisorium reilianum SRZ2]
Length = 511
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/426 (37%), Positives = 236/426 (55%), Gaps = 56/426 (13%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE +Y RSW+A+ ED+SG L S I ++ RR L+ A +Q+G+IR+L
Sbjct: 97 SWEATY--KRSWDAVAEDDSGSLESAVRSMIEGSKRRRVLKD------VAPVQRGIIRHL 148
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++IDLS + E D RP+R V + FV E+FDQNP+ Q+ ++ + G+A L +G
Sbjct: 149 VLLIDLSASMLEKDMRPNRFDVTLQYAREFVGEYFDQNPIGQLSIIGTRQGIAERLAMMG 208
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+ H +L K L G+ S+QNAL++ L +P+ RE+L ++ +L+TCDPG+
Sbjct: 209 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 268
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP- 265
I +TI + IR S++ L+AE+ + K +C TGGT+SVAL+E H + + E PPP
Sbjct: 269 IHDTIGTLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFELVPPPAV 328
Query: 266 -----------AIAEFAIA------------SLIKMGFPQR-AGEGSISICSCHKEVKIG 301
A A A L++M FP R + ++C+CH + G
Sbjct: 329 EGPRRTKRRSGAATNGAAADGEDDEEVHNGVDLLQMAFPLRLPAHAAPTLCACHSRSR-G 387
Query: 302 VGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNIS 361
GY CPRC +VC++PT+C +CG+ +V S HLARSYHHLFP+ P +A P + S
Sbjct: 388 SGYVCPRCGVKVCDVPTDCPVCGITIVMSTHLARSYHHLFPV-PNWKAVP--WTAVSATS 444
Query: 362 RSTCFGCQ---------QSLLASGNK----AGLCVA----CPKCKKHFCLECDIYIHESL 404
+ C C ++ A+ NK AGL + C +C + FCLECD ++HE L
Sbjct: 445 DAACLSCNLPFPTLQDGEASSAAANKALEDAGLSASSRYRCTRCSRDFCLECDAFVHEQL 504
Query: 405 HNCPGC 410
H CPGC
Sbjct: 505 HVCPGC 510
>gi|389623489|ref|XP_003709398.1| RNA polymerase TFIIH complex subunit Ssl1 [Magnaporthe oryzae
70-15]
gi|351648927|gb|EHA56786.1| RNA polymerase TFIIH complex subunit Ssl1 [Magnaporthe oryzae
70-15]
gi|440469566|gb|ELQ38674.1| suppressor of stem-loop protein 1 [Magnaporthe oryzae Y34]
gi|440482863|gb|ELQ63315.1| suppressor of stem-loop protein 1 [Magnaporthe oryzae P131]
Length = 516
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 169/458 (36%), Positives = 236/458 (51%), Gaps = 81/458 (17%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE RSW+ + E + G L A+ RRR+ T IQ+G+IR+L
Sbjct: 52 AWEDLQ---RSWDVVHELDDGNLSL---EGFLEAEKRRRV-----LRDTTPIQRGIIRHL 100
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+VID+S A AE D P+R + FVRE+FDQNP+SQ+ +V ++D +A ++DL
Sbjct: 101 VLVIDMSFAMAEKDLMPTRHRLTISYAIEFVREYFDQNPISQLAIVGMRDSIAVRISDLS 160
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P HI+ L + L SG S+QNAL++ G L PS+G REV+I++ AL + DPGD
Sbjct: 161 GNPAEHIEKLRALPDLDPSGSPSLQNALEMCRGALFNTPSHGTREVVIIFGALLSLDPGD 220
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQET----------------GGTYSVALDE 250
I ETI + +IR SVIGL+A+++IC+ +C+ T G Y+VAL E
Sbjct: 221 IHETIDGLMQDRIRVSVIGLAAQVYICEEICRRTNSGKAAADLGIVTDTDGSAYNVALHE 280
Query: 251 SHSKELILEHAPPPPA------IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGY 304
H +EL++ PP A ASL+ MGFP R + ++CSCH + G+
Sbjct: 281 VHFRELLMSATRPPVTRQSQLQQATGETASLLMMGFPSRKTDKDPALCSCHNR-PVRNGF 339
Query: 305 TCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST 364
C RC +RVC LP+EC CGL L+ S HLARSYHHLFP+ + E ND + +
Sbjct: 340 LCTRCGSRVCRLPSECPACGLTLILSTHLARSYHHLFPLKIWSEVP---WNDA--VRSVS 394
Query: 365 CFGCQQ----------------------------SLLASGNKAGLCVACPK--------- 387
CF C S +G K PK
Sbjct: 395 CFACHAPFPDAKNKDADKGKDAEKDPGDKHLKVPSKDTNGKKKKPAAPVPKGVSESGRYM 454
Query: 388 ---CKKHFCLECDIYIHESLHNCPGCESLRQSNPVVAN 422
C+ HFC++CD++ HE LHNCPGC+S + + N
Sbjct: 455 CQVCRHHFCIDCDVFSHEVLHNCPGCQSDTRGDLATTN 492
>gi|219521045|gb|AAI71919.1| GTF2H2C protein [Homo sapiens]
Length = 338
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/339 (44%), Positives = 207/339 (61%), Gaps = 24/339 (7%)
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 1 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 60
Query: 145 TDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
T+L G+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TC
Sbjct: 61 TELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTC 120
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAP 262
DP +I + I+ K +KIR SV GLSAE+ +C L +ETGGTY V LDESH KEL+ H
Sbjct: 121 DPSNIYDLIKTLKAAKIRVSVTGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVS 180
Query: 263 PPPAIAEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKA 311
PPPA + SLI+MGFPQ + S S+ + G+ GY CP+C+A
Sbjct: 181 PPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRA 239
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQS 371
+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ
Sbjct: 240 KYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGE 294
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 295 L-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 328
>gi|453087906|gb|EMF15947.1| TFIIH basal transcription factor complex, subunit SSL1
[Mycosphaerella populorum SO2202]
Length = 460
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 168/448 (37%), Positives = 250/448 (55%), Gaps = 54/448 (12%)
Query: 10 NGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDN------------S 57
+ + E ++D++ +NG R+ A AL E G D
Sbjct: 3 DSDHEYDEDDDLQVNGDGTGKGRTLASRPKARALARWEEGATGTGDLRQGADGNLLEVLG 62
Query: 58 AIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEA 117
I A R+RL T +Q+G+IR+ +++DLS A E D RP+R+++ V A
Sbjct: 63 GIEEAAKRKRL-----VKDTTPLQRGIIRHTILILDLSLAMMEKDLRPTRLLLTLTYVIA 117
Query: 118 FVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALD 175
F+RE+F+QNP+SQ+G++ +++G+A ++D+ G+P HI A+ + G+ S+QNAL+
Sbjct: 118 FIREYFEQNPISQLGILGMREGLAIRVSDMSGNPNDHINAIKALRSTDPKGNPSLQNALE 177
Query: 176 LVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKH 235
+ L PS+G REV I+ AL T DPGDI +TI+ C + KIR ++IGL+A+MFIC
Sbjct: 178 MARAALYHTPSHGTREVAIILGALHTSDPGDIHDTIKACIKDKIRVNIIGLAAQMFICAE 237
Query: 236 LCQET--GGT--YSVALDESHSKELILEHAPPPPAIA------EFAIASLIKMGFPQRAG 285
+C++T G T Y+VA+DE H +EL++ PP A + A+L+ MGFP R
Sbjct: 238 ICRKTNQGDTNCYNVAVDEVHYRELLMSITTPPVVRASDVEAQKRNQAALLMMGFPSRIV 297
Query: 286 EGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAP 345
E ++C+CH + G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+
Sbjct: 298 EEKATLCACHGNLTRG-GYLCSRCKAKVCNLPATCPTCELTLILSTHLARSYHHLFPLQN 356
Query: 346 FDEATPSRLNDLHNISRSTCFGCQQSLLA-SGNKAGLCVA-------------------- 384
+DE + R ++ CFGCQ A SG G+ +
Sbjct: 357 WDEVSWKRAQQKRSVQ---CFGCQSPFPALSGGIDGVDGSANGHSRPKRAEGASESSRYE 413
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCES 412
C C++HFC++CD++ HE +HNCPGC+S
Sbjct: 414 CSTCQQHFCIDCDVFCHEVVHNCPGCQS 441
>gi|443898092|dbj|GAC75430.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Pseudozyma antarctica
T-34]
Length = 498
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 230/415 (55%), Gaps = 45/415 (10%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE +Y RSW+A+ ED+SG L I ++ RR L+ A +Q+G+IR+L
Sbjct: 95 SWEATYK--RSWDAVAEDDSGSLESAVRQMIEGSKRRRTLKD------MAPVQRGIIRHL 146
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++IDLS + E D RP+R V + FV E+FDQNP+ Q+ ++ ++G+A L +G
Sbjct: 147 VLLIDLSASMLEKDMRPNRFDVTLQYAREFVNEYFDQNPIGQLSVIGTREGIAERLAMMG 206
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+ H +L K L G+ S+QNAL++ L +P+ RE+L ++ +L+TCDPG+
Sbjct: 207 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 266
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP-- 264
I +TI + IR SV+ L+AE+ + K +C TGG +SVAL+E H + + + PPP
Sbjct: 267 IHDTINTLVKDNIRVSVVHLAAEVKVFKDVCTRTGGVFSVALNEGHFHDALFDLVPPPAV 326
Query: 265 --PAIAEFAIA-----------SLIKMGFPQR-AGEGSISICSCHKEVKIGVGYTCPRCK 310
P + L++M FP R + ++C+CH + G GY CPRC
Sbjct: 327 DGPRKGKRRAGVQEEEEVQNGVDLLQMAFPLRLPAHAAPTLCACHSRSR-GSGYLCPRCG 385
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ- 369
+VC++PT+C +CG+ +V S HLARSYHHLFP+ + + D + CF C
Sbjct: 386 VKVCDVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVAWEAVGDR---AEDACFSCNL 442
Query: 370 ------QSLLASGNK----AGLCVA----CPKCKKHFCLECDIYIHESLHNCPGC 410
+ A+ NK AGL + C +C FCLECD ++HE LH CPGC
Sbjct: 443 QFPKKDDNRTAAANKALEDAGLSPSSRYRCTRCNHDFCLECDAFVHEQLHVCPGC 497
>gi|341877728|gb|EGT33663.1| hypothetical protein CAEBREN_16370 [Caenorhabditis brenneri]
Length = 376
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 231/401 (57%), Gaps = 31/401 (7%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+DDE++ WE YA+ + E L EDE G + + A Y A +R+ R L
Sbjct: 2 DDDEQKGYT-----WEAGYAEGLNINEVLVEDEGGSIE--KSIAKYVADSKRKAR---LE 51
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
+I+ G++R++ IVID SR PSR VVV K +++F+ FF+QNP++QIGL+
Sbjct: 52 KRPEKIRLGIMRHIMIVIDCSRFMTNKAMPPSRFVVVMKALQSFLERFFEQNPIAQIGLI 111
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
T KD A LT + G+ +AL M + C GD S+QNAL L L +P + REV
Sbjct: 112 TCKDRKAERLTMMTGNIRVLKEALNSMSEAFCGGDFSLQNALQLACANLKGMPGHVSREV 171
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
LI+ +ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H
Sbjct: 172 LIVMAALSSIDPGNIFSTIETMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDH 231
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK--IGVGYTCPRCK 310
+ L +H PP + A+ + + I +GFP + S C CH + K G+ C +C
Sbjct: 232 LQLLFSKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPISSRGFICTQCG 290
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ 370
AR C +P EC +C L LV++P LAR++ HL P+A F + +++R +C+ C+
Sbjct: 291 ARHCSIPAECPVCKLTLVAAPQLARAFRHLQPLAAFQQI---------DVTRGSCYACET 341
Query: 371 SLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
L + G + C KC+ FCL+CD +HESLH CPGC+
Sbjct: 342 RLTSEGFR------CEKCRLVFCLDCDTLLHESLHVCPGCK 376
>gi|407917809|gb|EKG11111.1| von Willebrand factor type A [Macrophomina phaseolina MS6]
Length = 481
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 159/426 (37%), Positives = 228/426 (53%), Gaps = 52/426 (12%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE+ D AL+E G L P D A+ R+RLR T Q+G+IR++
Sbjct: 42 WEQGVQADA--HALKEGADGKLLP-DEEDNPEAKKRKRLRQ-----DTKPFQRGIIRHVV 93
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D S A + DF+P+R V K + +VREFF+QNP+SQ+ ++T+ DG+ N +++L G
Sbjct: 94 LVLDQSEAMLDKDFKPTRYAAVLKYAQEYVREFFEQNPISQLSVMTMYDGLCNRVSELSG 153
Query: 150 SPESHIKALMGKLGC--------SGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
+P HI L G S+QNAL+ L PS+G REV+I+ AL +
Sbjct: 154 NPNDHISPLQRMRDTRNPNYQDPRGSPSLQNALEQARAALYHTPSHGTREVIIILGALLS 213
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELI 257
DPGDI +TI C ++ +R ++IG+ + IC+ +C T G Y VA+D+ H ++L+
Sbjct: 214 LDPGDIFKTIANCVKNNVRVNIIGMGGRLKICQEICSRTNGGDESAYVVAVDQLHFRDLL 273
Query: 258 LEHAPPP-----PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKAR 312
L PP A A ASL+KMGFP R E + +IC+CH + G GY C +C+A+
Sbjct: 274 LATTTPPVIRQTTAQAAANPASLLKMGFPSRVEESAPTICACHGTLTRG-GYLCSQCQAK 332
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCF------ 366
VC LPT C C L L+ S HLARSYHHLFP+ + E T R + + +C
Sbjct: 333 VCSLPTTCPSCNLTLILSTHLARSYHHLFPLKNWREVTWERARQVGSTECKSCLTPFPPL 392
Query: 367 --------------GCQQSLLASGNKAGLCVA------CPKCKKHFCLECDIYIHESLHN 406
G Q + N G+ + C C+ HFC++CD+Y HE +HN
Sbjct: 393 PARSAAAKKAATANGEQHGAPGTKNTEGVGASESSRYECEDCRNHFCVDCDVYCHEIVHN 452
Query: 407 CPGCES 412
CPGC S
Sbjct: 453 CPGCLS 458
>gi|302656432|ref|XP_003019969.1| hypothetical protein TRV_05937 [Trichophyton verrucosum HKI 0517]
gi|291183747|gb|EFE39345.1| hypothetical protein TRV_05937 [Trichophyton verrucosum HKI 0517]
Length = 515
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 160/425 (37%), Positives = 238/425 (56%), Gaps = 54/425 (12%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRR-------------LRGRS---- 72
WE + R+WE L E G + + + A R+R LR +
Sbjct: 64 WEVA----RTWETLVEGADGTITATVD-GLLEADKRKRCVFSFSTLGKHRLLRTKEKMLI 118
Query: 73 ---LTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
L T +Q+G+IR++ +V+DLS A AE D RP+R ++ + + FV+EFF+QNP+S
Sbjct: 119 ICRLLKDTTPLQRGIIRHMILVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPIS 178
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSY 187
Q+G++ +KDG+A ++++ G+P H+ AL + G S+QNAL++ G L PS+
Sbjct: 179 QLGIMGMKDGIAVQISEMSGNPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSH 238
Query: 188 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GT 243
G REV+I+ AL + DPGDI +TI K+R +IGL+A++ IC+ +C +T +
Sbjct: 239 GTREVIIILGALLSSDPGDIHQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSS 298
Query: 244 YSVALDESHSKELILEHAPPPPAIAE-FAIASLIKMGFPQRAGEGSISICSCHKEVKIGV 302
Y VA+DE H +L+L+ PP ++ ++ SL+ MGFP R E S+C+CH + G
Sbjct: 299 YGVAIDEKHLWDLLLDVTTPPVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG- 357
Query: 303 GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISR 362
GY C RC ++VC LP EC C L L+ S HLARSYHHLFP+ + E R SR
Sbjct: 358 GYMCSRCGSKVCSLPAECPTCNLTLILSTHLARSYHHLFPLINWVEVPWKR------ASR 411
Query: 363 S-TCFGCQQSLLASGNK----------AGLCVA----CPKCKKHFCLECDIYIHESLHNC 407
S +CF C A + G+ V+ C C HFC++CD++ HE +HNC
Sbjct: 412 SVSCFACGNPFPAVPPRDKWDMRDRSIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNC 471
Query: 408 PGCES 412
PGC+S
Sbjct: 472 PGCQS 476
>gi|406863243|gb|EKD16291.1| RNA polymerase TFIIH complex subunit Ssl1 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 524
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 157/425 (36%), Positives = 236/425 (55%), Gaps = 41/425 (9%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
G WE RSW+ + E G L + +R LR T +Q+G+I
Sbjct: 110 GRAKWEDI---QRSWDTVVEGADGSLNSTVEGLRDAGKRKRLLRD------TTPVQRGII 160
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R+ +++DLS A E D RP+R ++ + FV EFF+QNP+SQ+G++ ++DG+A ++
Sbjct: 161 RHFILIMDLSFAMVEKDLRPTRYLLTLRFASEFVTEFFEQNPISQLGVLGMRDGIAIRVS 220
Query: 146 DLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
++GG+P HI+ + + L G+ S+QNAL++ +L+ P++G REVLI+ AL T D
Sbjct: 221 EMGGNPTEHIENIKKLRDLQGQGNPSLQNALEMARAILHYAPAHGTREVLIISGALLTSD 280
Query: 204 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELILE 259
PGDI ET++ +IR SV+GL+A++ I +C +T G Y VAL+E H +EL++
Sbjct: 281 PGDIHETVRSLVTDRIRVSVVGLAAQVKILSVICSKTNAGNEGNYHVALNEQHFRELVMA 340
Query: 260 HAPPPPAIAEF-AIASLIKMGFPQR-AGEG-SISICSCHKEVKIGVGYTCPRCKARVCEL 316
PP + + +L+ MGFP R +G G ++S C+CH ++ G GY C RC ++VC L
Sbjct: 341 LTTPPVTRTKTQSQPTLLMMGFPSRISGVGKAMSYCACHSKLVRG-GYLCSRCDSKVCSL 399
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC-------- 368
P +C +CGL LV S HLARSYHHLFP+ + E S+ CF C
Sbjct: 400 PADCPVCGLTLVLSTHLARSYHHLFPLKNWVEVPWSQAG-----KSKACFACLTAFPEVP 454
Query: 369 ----QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPV----- 419
+ G C C HFC++CD++ HE +HNCPGC+S Q +
Sbjct: 455 SHLEKNGAEREGTSESGRYTCEDCGYHFCIDCDVHAHEVVHNCPGCQSDSQQQQIGIAHE 514
Query: 420 VANEG 424
V N+G
Sbjct: 515 VKNDG 519
>gi|240277005|gb|EER40515.1| transcription factor TFIIH complex subunit Ssl1 [Ajellomyces
capsulatus H143]
gi|325094945|gb|EGC48255.1| transcription factor TFIIH [Ajellomyces capsulatus H88]
Length = 505
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 167/439 (38%), Positives = 241/439 (54%), Gaps = 60/439 (13%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
+++ GG E WE S R+WE L E G + + + +R LR T
Sbjct: 62 KKQKSRGGAE-WEVS----RTWETLVESADGTISATVEDLLGAGKRKRLLRD------TT 110
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+Q+G+IR+L +V+DLS A AE D RP+R ++ + + FV EFF+QNP+SQ+G++ ++D
Sbjct: 111 PLQRGIIRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRD 170
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
G+A ++D+ G+P HI A+ + G S+QNAL++ G L P++G REVLI++
Sbjct: 171 GLAVRISDMSGNPTDHIMAIQALRPKDPKGMPSLQNALEMARGTLFHTPTHGTREVLIIF 230
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESH 252
AL + DPGDI +TI KIR S+IGL+A++ IC+ LC T Y +AL+E H
Sbjct: 231 GALLSSDPGDIHQTITALVADKIRISIIGLAAQVAICRDLCGRTNNGDDTVYGIALNEQH 290
Query: 253 SKELILE-HAPPPPAIAEFAI------------------ASLIKMGF--PQRAGEGSISI 291
+EL + APPP +A + +SL+ MGF + S+
Sbjct: 291 FRELFMNVTAPPPTTVAPTSTPTASSANGPKTTTTNTTTSSLLMMGFPSLTLTTTPTPSL 350
Query: 292 CSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATP 351
C+CH + GY C RC A+VC LP+ C CGL L+ S HLARSYHHLFP+ + E +
Sbjct: 351 CACHSKPS-RAGYLCCRCNAKVCTLPSSCPCCGLTLILSTHLARSYHHLFPLMNWVEVSW 409
Query: 352 SRLNDLHNISRSTCFGC-----QQSLLASGN-----KAGLCVA--------CPKCKKHFC 393
R + S CF C + L SG KA L V CP C+ HFC
Sbjct: 410 RRAARKRSAS---CFACGVGFPRMPKLVSGEPEETAKAALGVGVSVSGRYECPVCECHFC 466
Query: 394 LECDIYIHESLHNCPGCES 412
++CD++ HE +HNCPGC+S
Sbjct: 467 IDCDVFAHEVVHNCPGCQS 485
>gi|322700310|gb|EFY92066.1| TFIIH basal transcription factor complex p47 subunit , putative
[Metarhizium acridum CQMa 102]
Length = 457
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/421 (39%), Positives = 232/421 (55%), Gaps = 68/421 (16%)
Query: 26 GLEAWERSYADDRSWEA--LQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
G +AWE+S RSWE +ED+ G L N + A+ RRRL T +Q+G
Sbjct: 46 GEQAWEKS---KRSWETNLPEEDQDGIL----NLTVLEAEKRRRL-----MRDTTPLQRG 93
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR++ +V+D+S A AE D P+R + AFVRE+F+QNP+SQ+G++ ++DGVA
Sbjct: 94 IIRHMMLVLDMSFAMAEKDLLPTRYRLTISYALAFVREYFEQNPISQLGIIGMRDGVAVR 153
Query: 144 LTDLGGSPESHIKALMGKLGCS--GDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++DL G+P HI+ L G G+ S+QNAL++ G L PS+G REVLI+Y AL +
Sbjct: 154 ISDLSGNPAEHIERLKAVEGQDPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLS 213
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELI 257
DPGDI ETI KIR S++GLSA++ IC LC T Y++A+DE H ++L
Sbjct: 214 SDPGDIHETIANLVTDKIRVSIVGLSAQVAICADLCSRTNAGDDSQYNIAMDEVHFRDLF 273
Query: 258 LEHAPPPPA-IAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
L PP AE + ASL+ MGFP R A G+IS C+CH + + GY
Sbjct: 274 LASTTPPVTRTAEQSTASLLMMGFPSRTLAPGGAISFCACHSK-PLREGYNS-------- 324
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST-CFGC----- 368
CGL L+ S HLARSYHHLFP+ + E + + +RST CF C
Sbjct: 325 --------CGLTLILSTHLARSYHHLFPLRNWVEVSWTE------ATRSTACFSCLCPFP 370
Query: 369 ----------------QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ L A G AC C HFC++CD++ H+ +HNCPGC+S
Sbjct: 371 EPPKDKVDGVEKSKDDTRHLKAKGVSESGRYACEVCGNHFCIDCDVFAHQVIHNCPGCQS 430
Query: 413 L 413
+
Sbjct: 431 I 431
>gi|393909764|gb|EJD75581.1| nucleolar protein 14 [Loa loa]
Length = 1208
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/403 (39%), Positives = 232/403 (57%), Gaps = 32/403 (7%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+DDE E WE YAD + + L EDESG + I + ++RL R
Sbjct: 3 DDDEPEGY-----TWEVDYADGLNIRDVLHEDESGSIEKSVAKLILDTKRKKRLNNRP-- 55
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
A+++ G++RYLY+VID S + A+ PSR+ V K + F+ +F +QNP+SQ+G+V
Sbjct: 56 ---AKVRLGIMRYLYLVIDCSFSMADKSIPPSRLAVTIKALNQFLDKFSEQNPISQVGIV 112
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
KD A CL L G+ ++L + ++ C G+ S+ N+L L+ P Y REV
Sbjct: 113 VCKDKRAECLIPLTGNVRLVKESLSTITEVLCHGEFSLHNSLMAAIKSLHSYPGYASREV 172
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+++ ++LSTCDP +I T + K IRCSVI LSAE+FI + LC T G ++V LD +H
Sbjct: 173 ILIVASLSTCDPSNIFGTFELLKRYHIRCSVISLSAEVFIFRKLCSATSGCHNVILDSTH 232
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHK-EVKI--GVGYTCPRC 309
+ ++ EHA PP + + A +S+++MGFP S S C CH+ E++ G G+ CP+C
Sbjct: 233 FEVILNEHANPPIS-SRNAESSVVRMGFPAHESIDSPSFCLCHQSEIRPSGGRGFFCPQC 291
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ 369
AR C LP ECRIC L L+S+P LARS H+L P+ F+E + + CF C
Sbjct: 292 GARYCSLPVECRICKLTLISAPQLARSLHNLLPLPAFEEI---------DTTERVCFACI 342
Query: 370 QSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ L +K+ C CK FC++CD+ +HESL CPGC+S
Sbjct: 343 RQL---DDKS---FVCKNCKSTFCIDCDVLLHESLQICPGCKS 379
>gi|302680178|ref|XP_003029771.1| hypothetical protein SCHCODRAFT_82959 [Schizophyllum commune H4-8]
gi|300103461|gb|EFI94868.1| hypothetical protein SCHCODRAFT_82959 [Schizophyllum commune H4-8]
Length = 400
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 213/336 (63%), Gaps = 27/336 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE SY RSW+ +QEDESG L+ + A+ +R L + I++ +IR+L
Sbjct: 51 TWEASYT--RSWDTVQEDESGSLQGAVEDWVVRARRKR------LQAPSTAIRRTIIRHL 102
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++DLS A + D RP+R ++ + FV E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 103 VLLLDLSSAMLDRDMRPTRFDLMLQYAREFVVEWFDQNPLGQIGVVGMRSGIGERICEMT 162
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ +K++ +L G+ S+QNA+++ ++ +P++ RE+L+++ +L+TCDPGD
Sbjct: 163 GNPQDVLKSISERHRLEPQGEPSLQNAIEMARSSMSHLPTHSSREILLIFGSLTTCDPGD 222
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP-- 264
I +T+ C KIR SV+ L+AEM IC+ C +TGG + VAL+E H ++++ E PPP
Sbjct: 223 IHDTLDTCVRQKIRVSVVALAAEMKICREFCDKTGGQFGVALNEGHFRDILFELVPPPAQ 282
Query: 265 ----------PAIAEFA---IASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCK 310
P A A A L+ MGFP R + + S+C+CH E++ G+ CPRC+
Sbjct: 283 RALGGAGMGAPGKATAASGPSADLMMMGFPTRLPDTTPPSLCACHGELR-SAGFLCPRCQ 341
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPF 346
++VC++PT+C +CGL +VSSPHLARSYHHLFP+ P+
Sbjct: 342 SKVCDVPTDCDVCGLMIVSSPHLARSYHHLFPVRPY 377
>gi|171689514|ref|XP_001909697.1| hypothetical protein [Podospora anserina S mat+]
gi|170944719|emb|CAP70830.1| unnamed protein product [Podospora anserina S mat+]
Length = 501
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/452 (37%), Positives = 232/452 (51%), Gaps = 92/452 (20%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE + R+W+ + E G I + + A+ RRRL T IQ+G+IR++
Sbjct: 46 AWEEVH---RAWDEVAIAEDG---SITVAELIEAEKRRRLMRD-----TTPIQRGIIRHM 94
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+D+S A AE D P+R + FV FF QNP+SQ+G++ ++DG+A ++D+
Sbjct: 95 VLVLDMSIAMAEKDLLPNRFALTFSYAMEFVNTFFQQNPISQLGIIGMRDGIAVRISDMS 154
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P HI+ L G+ S+QNAL++ G L PS+G REVLI+Y AL + DPGD
Sbjct: 155 GNPVEHIEKLRQWALKDPIGNPSLQNALEMCRGHLYHTPSHGTREVLIIYGALLSSDPGD 214
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT----YSVALDESHSKELILEHAP 262
I +TI +IR S+IGL+A++ IC LC T Y +AL E H +EL L
Sbjct: 215 ISDTITSLIADRIRVSIIGLAAQVAICAELCARTNDNDDSQYRIALHEQHFRELFLAATT 274
Query: 263 PPPAI-AEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTE 319
PP AE + ASL+ MGFP R A + +S+C+CH + GYTC RC+ +VC LP
Sbjct: 275 PPVTHEAEQSNASLLMMGFPSRSLASKDFVSLCACHNK-PTREGYTCTRCRIKVCRLPAS 333
Query: 320 CRICGLQLVSSPHLARSYHHLFPI-----APFDEATPSRLNDLHNISRSTCFGCQQ---- 370
C +CGL L+ S HLARSYHHLFP+ P+ EA S CF CQ
Sbjct: 334 CPVCGLTLILSIHLARSYHHLFPLKSWVAVPWTEAKKS----------VACFSCQTPFPP 383
Query: 371 ------------------------------------------------SLLASGNKAGLC 382
LL KAG+
Sbjct: 384 VPKAAPPKIKLKVKESSGVGGQTAANIAKAKGRGEVPAKTNTVTAPTPGLLPEAIKAGVS 443
Query: 383 ----VACPKCKKHFCLECDIYIHESLHNCPGC 410
CP+C++HFC++CDIY HE++HNCPGC
Sbjct: 444 ESGRYKCPECEEHFCIDCDIYAHETIHNCPGC 475
>gi|226295046|gb|EEH50466.1| suppressor of stem-loop protein [Paracoccidioides brasiliensis
Pb18]
Length = 518
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/457 (35%), Positives = 230/457 (50%), Gaps = 61/457 (13%)
Query: 6 RSRLNGEAEEEDDEEENLNG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQY 64
R +G A D G G WE S R+WE L E G +R + +
Sbjct: 34 RPSASGRAARSKDARRRKKGRGGAEWEVS----RTWETLVEGADGTIRATVEGLLEAGKR 89
Query: 65 RRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFD 124
RR LR T +Q+G+IR+L +++DLS A +E D RP+R ++ + + FVREFFD
Sbjct: 90 RRVLRD------TTPLQRGIIRHLILILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFD 143
Query: 125 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLN 182
QNP+SQ+G+V ++DG+A ++D+ G+P HI A+ G G S+QNAL++ G L
Sbjct: 144 QNPISQLGVVGMRDGLAVRISDMSGNPTEHILAIQGLRAKDPKGMPSLQNALEMARGALF 203
Query: 183 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG 242
PS+G REVLI+Y AL + DPGDI +TI KI V+GL+A++ IC+ L T
Sbjct: 204 HTPSHGTREVLIIYGALLSSDPGDIHKTITSLITDKIHVYVLGLAAQVSICQELVTRTNN 263
Query: 243 ----TYSVALDESHSKELILEHAPPPPAIAEFAI---------------ASLIKMGFPQR 283
Y+VA++E H +EL+L PP +L+ MGFP R
Sbjct: 264 GDDSGYNVAMNEQHFRELVLNVTTPPATTLASHTAAAAANGTGTNPSTDGTLLPMGFPNR 323
Query: 284 AGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI 343
++C+CH GY CPRC +VC LP C C L L+ S HLARSYHHLFP+
Sbjct: 324 HLTPHPTLCACHSTPSRS-GYLCPRCCTKVCTLPASCPSCNLTLILSTHLARSYHHLFPL 382
Query: 344 APFDEATPSRLNDLHNISRSTCFGCQQSLLASGNK------------------------A 379
+ E + + R CF C +
Sbjct: 383 MNWVEVSWRKAARAEAEGRVGCFACGVGFAGVPGEFVGAEGDEEREEEEDGKGEGKGASR 442
Query: 380 GLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
G+ V+ C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 443 GISVSGRYECLVCRCHFCIDCDVFAHEVVHNCPGCQS 479
>gi|193627420|ref|XP_001947532.1| PREDICTED: general transcription factor IIH subunit 2-like
[Acyrthosiphon pisum]
Length = 388
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 233/393 (59%), Gaps = 27/393 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +++WE ++EDE G + I ++ R L ++ G++R+L+
Sbjct: 11 WEGGY--EKTWEEVKEDEGGNVEWSVKEIIEKSK-------RLLATRQPNVRLGMMRHLF 61
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+++D S + E D +P+R + K ++ F++++FDQNP+SQ+GL+T ++ A +++L G
Sbjct: 62 VIVDSSNSMVEKDLKPTRQLCTYKLLQDFIQDYFDQNPISQLGLITTRNSSAERISELSG 121
Query: 150 SPESHIKALMGKLG----CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
+ + H++ L G C+G S+QN+L++ ++ +PS+ +E+LI+ S+LS+CDPG
Sbjct: 122 NRKYHLEELKKTFGDFNYCNGLMSVQNSLEIALSVMKMLPSHTSKEILIIGSSLSSCDPG 181
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP 265
+I +I+ K IR S+I L+AE+ + +HLC ET G ++V +D+ H K ++ P P
Sbjct: 182 EINTSIEMLKTHNIRVSMIHLAAEVRMFRHLCNETKGKHNVIVDDVHFKHILWSLVEPVP 241
Query: 266 AIAEFAIASLIKMGFPQRAGEG-SISICSCH--KEVKIGV-GYTCPRCKARVCELPTECR 321
+ AS +KMGFPQ + + CSCH + K+ G+ CP+C ++ CELP EC+
Sbjct: 242 -LPNSVDASCVKMGFPQELEQKPPFTTCSCHLAEGGKLNAKGFFCPQCNSKYCELPVECK 300
Query: 322 ICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGL 381
CGL LVSS HLARS HHL PI PF + +L S + C+GC++ +
Sbjct: 301 CCGLILVSSLHLARSLHHLVPIKPFIKI------ELEEGSSAYCYGCRKRIKVPAENVYF 354
Query: 382 CVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
C + CKKH+C CDIY+H +LH CPGC R
Sbjct: 355 CES---CKKHYCDGCDIYVHNTLHVCPGCAVKR 384
>gi|322708259|gb|EFY99836.1| TFIIH basal transcription factor complex p47 subunit , putative
[Metarhizium anisopliae ARSEF 23]
Length = 456
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 168/420 (40%), Positives = 230/420 (54%), Gaps = 68/420 (16%)
Query: 26 GLEAWERSYADDRSWEA--LQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
G +AWE+S RSWE +ED+ G L N + A+ RRRL T +Q+G
Sbjct: 45 GEQAWEKS---KRSWETNLPEEDQDGIL----NLTVLEAEKRRRL-----MRDTTPLQRG 92
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR++ +V+D+S A AE D P+R + AFVREFF+QNP+SQ+G++ ++DGVA
Sbjct: 93 IIRHMMLVLDMSFAMAEKDLLPTRYRLTISYALAFVREFFEQNPISQLGIIGMRDGVAVR 152
Query: 144 LTDLGGSPESHIKALMGKLGCS--GDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++DLGG+P HI+ L G G+ S+QNAL++ G L PS+G REVLI+Y AL +
Sbjct: 153 ISDLGGNPAEHIERLKAVEGQDPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLS 212
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELI 257
DPGDI ETI KIR S++GLSA++ IC LC T Y++A+DE H ++L
Sbjct: 213 SDPGDIHETISNLIADKIRVSIVGLSAQVAICADLCSRTNAGDDSQYNIAMDEVHFRDLF 272
Query: 258 LEHAPPPPA-IAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
L PP AE ASL+ MGFP R A G+IS C+CH + + GY
Sbjct: 273 LAGTTPPVTRTAEQNTASLLMMGFPSRTLAPGGAISFCACHSK-PLREGYNS-------- 323
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST-CFGC----- 368
CGL L+ S HLARSYHHLFP+ + E + + +RST CF C
Sbjct: 324 --------CGLTLILSTHLARSYHHLFPLRNWVEVSWAE------ATRSTVCFSCLCPFP 369
Query: 369 ----------------QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ A G AC C HFC++CD++ H+ +HNCPGC+S
Sbjct: 370 EPPKDKIDGVEKSKDDTRHPKAKGVSESGRYACEVCGNHFCIDCDVFAHQVIHNCPGCQS 429
>gi|388856633|emb|CCF49750.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Ustilago hordei]
Length = 506
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 153/426 (35%), Positives = 231/426 (54%), Gaps = 54/426 (12%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE +Y RSW+A+ ED+SG L I ++ RR L+ A +Q+G+IR+L
Sbjct: 89 SWEETY--KRSWDAVAEDDSGSLESAVRQMIEGSKRRRTLKD------VAPVQRGIIRHL 140
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++IDLS + E D RP+R V + + FV E+FDQNP+ Q+ ++ ++G+A L +G
Sbjct: 141 VLLIDLSASMLEKDMRPNRFDVTLQYAKEFVMEYFDQNPIGQLSVIGTREGIAERLAMMG 200
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+ H +L K L G+ S+QNAL++ L +P+ RE+L ++ +L+TCDPG+
Sbjct: 201 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 260
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP-- 264
I +TI + IR S++ L+AE+ + K +C TGGT+SVAL+E H + + EH PPP
Sbjct: 261 IHDTINTLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFEHVPPPAV 320
Query: 265 --PAIAEFAI--------------------ASLIKMGFPQR-AGEGSISICSCHKEVKIG 301
P + I L++M FP R + ++C+CH + G
Sbjct: 321 EGPRRPKRRIIAASGNGAATTEEEEEVANGVDLLQMAFPLRLPAHAAPTLCACHSRSR-G 379
Query: 302 VGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNIS 361
GY CPRC +VC++PT+C +CG+ +V S HLARSYHHLFP+ + S L +
Sbjct: 380 SGYLCPRCGVKVCDVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKVVPWSALLSAAKV- 438
Query: 362 RSTCFGCQ-------------QSLLASGNKAGLCVA----CPKCKKHFCLECDIYIHESL 404
C C + + +AGL + C +C FCLECD ++HE L
Sbjct: 439 EPACLSCNLLFPTQEQGAARSAAANKALEEAGLSESSRYRCGRCSHDFCLECDAFVHEQL 498
Query: 405 HNCPGC 410
H CPGC
Sbjct: 499 HVCPGC 504
>gi|324518504|gb|ADY47122.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 386
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 221/403 (54%), Gaps = 32/403 (7%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
EDDE++ WE +YA+ + E L+EDESG + I+ A+ +RRL R
Sbjct: 7 EDDEQKGYT-----WEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP-- 59
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
ARI+ G++RY+YI+ID S A E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 ---ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGII 116
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
+D A L L G+ + +AL + + C G+ S+QN L + L P + RE+
Sbjct: 117 ICRDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREI 176
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+ + ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD H
Sbjct: 177 IAIVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDH 236
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKI---GVGYTCPRC 309
ELIL PP + +++MGFP + C CH+ G G+ CP+C
Sbjct: 237 F-ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQC 295
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ 369
AR C LP ECR+C L L+S+P LARS+HHL P+ F E + + CFGC
Sbjct: 296 GARYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEV---------DTTSGICFGCA 346
Query: 370 QSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ L AC C ++C++CD+ +HESL CP C S
Sbjct: 347 KPLEQKS------FACKSCDANYCIDCDLLLHESLQLCPACPS 383
>gi|308501637|ref|XP_003113003.1| hypothetical protein CRE_25217 [Caenorhabditis remanei]
gi|308265304|gb|EFP09257.1| hypothetical protein CRE_25217 [Caenorhabditis remanei]
Length = 376
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/399 (40%), Positives = 228/399 (57%), Gaps = 30/399 (7%)
Query: 17 DDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTV 75
DDEE+ WE YA+ + + L EDE G + + A Y A +R+ R L
Sbjct: 2 DDEEQKGY----TWEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKAR---LAK 52
Query: 76 ATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVT 135
RI+ G++R++ IVID SR PSR VVV K +++F+ FF+QNP++QIGL+T
Sbjct: 53 RPERIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQSFLERFFEQNPIAQIGLIT 112
Query: 136 VKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVL 193
KD A +T + G+ ++L + + C GD S+QNAL L L +P + REV+
Sbjct: 113 CKDRKAERMTMMTGNIRVLKESLNSLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVV 172
Query: 194 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS 253
I+ +ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H
Sbjct: 173 IVMAALSSIDPGNIFSTIESMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDHL 232
Query: 254 KELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK--IGVGYTCPRCKA 311
+ L +H PP + A+ + + I +GFP + S C CH + K G+ C +C A
Sbjct: 233 QLLFSKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPVSSRGFICTQCGA 291
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQS 371
R C +P EC +C L LV++P LAR++ HL P+A F + +++R C+ C+
Sbjct: 292 RHCSIPAECPVCKLTLVAAPQLARAFRHLQPLAAFQQI---------DVARGQCYACETR 342
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L + G + C KC+ FCL+CD +HESLH CPGC
Sbjct: 343 LASEGFR------CEKCRSVFCLDCDTLLHESLHVCPGC 375
>gi|154276968|ref|XP_001539329.1| suppressor of stem-loop protein 1 [Ajellomyces capsulatus NAm1]
gi|150414402|gb|EDN09767.1| suppressor of stem-loop protein 1 [Ajellomyces capsulatus NAm1]
Length = 506
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 240/439 (54%), Gaps = 60/439 (13%)
Query: 19 EEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATA 78
+++ GG E WE S R+WE L E G + + + +R LR T
Sbjct: 63 KKQKGRGGAE-WEVS----RTWETLVESADGTISATVEDLLGAGKRKRLLRD------TT 111
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+Q+G+IR+L +V+DLS A AE D RP+R ++ + + FV EFF+QNP+SQ+G++ ++D
Sbjct: 112 PLQRGIIRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRD 171
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
G+A ++D+ G+P HI A+ + G S+QNAL++ G L P++G REVLI++
Sbjct: 172 GLAVRISDMSGNPTDHIMAIQALRPKDPKGTPSLQNALEMARGALFHTPTHGTREVLIIF 231
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESH 252
AL + DPGDI +TI KIR S+IGL+A++ IC+ LC T Y VAL+E H
Sbjct: 232 GALLSSDPGDIHQTITALVADKIRISIIGLAAQVAICRDLCARTNNGDDTVYGVALNEQH 291
Query: 253 SKELILE-HAPPPPAIAEFAIAS------------------LIKMGF--PQRAGEGSISI 291
+EL ++ APP +A + + L+ MGF + S+
Sbjct: 292 FRELFMDVTAPPATTVAPTSTPTAFSANGPKTTTTSTTTSSLLMMGFPSLTLTTTPTPSL 351
Query: 292 CSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATP 351
C+CH + GY C RC A+VC LP+ C CGL L+ S HLARSYHHLFP+ + E +
Sbjct: 352 CACHSKPS-RAGYLCCRCNAKVCTLPSSCPCCGLTLILSTHLARSYHHLFPLMNWVEVSW 410
Query: 352 SRLNDLHNISRSTCFGC-----QQSLLASGN-----KAGLCVA--------CPKCKKHFC 393
R + S CF C + L SG KA + V CP C+ HFC
Sbjct: 411 RRAARKRSAS---CFACGVGFPRMPKLVSGEPEETAKAAVGVGVSVSGRYECPVCECHFC 467
Query: 394 LECDIYIHESLHNCPGCES 412
++CD++ HE +HNCPGC+S
Sbjct: 468 IDCDVFAHEVVHNCPGCQS 486
>gi|429848008|gb|ELA23542.1| tfiih basal transcription factor complex p47 subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 488
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 227/421 (53%), Gaps = 62/421 (14%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
RSWE + E G L A A+ RRRL T +Q+G+IR+L +V+D+S A
Sbjct: 54 RSWEEVTEGADGSLAV---GASLEAEKRRRL-----LKDTTPLQRGIIRHLVLVLDMSFA 105
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
E D P+R V FV+E+F+QNP+SQ+G++ ++DGVA ++D+ G+P H++
Sbjct: 106 MTEKDMLPNRYRVTWAYAADFVKEYFEQNPISQLGIIGMRDGVALRISDMSGNPTDHLEK 165
Query: 158 LMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
L G SG+ S+QNAL++ G L PS+G REVL+++ AL + DP DI ETI
Sbjct: 166 LKSFEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLVVFGALLSSDPADIHETISSLI 225
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPA-IAEF 270
+IR SV+GL+A++ IC LC T YSV ++++H ++L+L PP A
Sbjct: 226 TDRIRVSVVGLAAQVAICAELCSRTNSGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAAQ 285
Query: 271 AIASLIKMGFPQRA---GEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQL 327
+ ASL+ MGFP R GE + +IC+CH + GY C RC RVC LP EC CGL L
Sbjct: 286 STASLLMMGFPSRTLVRGEAT-AICACHNK-PAREGYLCTRCSTRVCRLPIECPACGLTL 343
Query: 328 VSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC------------------- 368
+ S HLARSYHHLFP+ + E ++ S C+ C
Sbjct: 344 ILSTHLARSYHHLFPLRNWVEVPWAKAG-----SSKACYSCLTAFPEPPRASKKRDKEKA 398
Query: 369 -----------------QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
S L +++G AC C HFC++CD+Y HE +HNCPGC+
Sbjct: 399 NDNDGVTTTTPVAPTPVAPSELKGVSESGR-YACTVCNSHFCIDCDVYAHEVIHNCPGCQ 457
Query: 412 S 412
S
Sbjct: 458 S 458
>gi|358377786|gb|EHK15469.1| hypothetical protein TRIVIDRAFT_56425 [Trichoderma virens Gv29-8]
Length = 402
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/369 (42%), Positives = 210/369 (56%), Gaps = 44/369 (11%)
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T +Q+G+IR+L +V+D+S A AE D P+R + AFVRE+F+QNP+SQ+ +V +
Sbjct: 19 TTPLQRGIIRHLVLVLDMSFAMAEKDLLPTRYRLTLSYAAAFVREYFEQNPISQLAIVGM 78
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
+DGVA ++D+GG+P H++ L G G+ S+QNAL++ G L PS+G REVLI
Sbjct: 79 RDGVAVRVSDMGGNPAEHLERLRDLDGQDPQGNPSLQNALEMCRGALFHAPSHGTREVLI 138
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDE 250
+Y AL + DPGDI +TI +IR SV+GLSA++ IC LC T Y+VA+DE
Sbjct: 139 IYGALLSSDPGDIHDTISNLIAERIRVSVVGLSAQVAICAELCSRTNVGDDSQYNVAMDE 198
Query: 251 SHSKELILE-HAPPPPAIAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCP 307
+H K+L L PP E + +SL+ MGFP R A G+ S C+CH + GY C
Sbjct: 199 THFKDLFLAITTPPVNRTKEQSTSSLLMMGFPSRTLAPGGTTSYCACHSK-PCREGYLCT 257
Query: 308 RCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI-----APFDEATPSRLNDLHNISR 362
RC +VC LP+EC CGL L+ S HLARSYHHLFP+ P+ EAT S
Sbjct: 258 RCGVKVCRLPSECPACGLTLILSTHLARSYHHLFPLRNWVEVPWAEATRS---------- 307
Query: 363 STCFGCQ-------------------QSLLASGNKAGLCVACPKCKKHFCLECDIYIHES 403
CF CQ A G C C HFC++CD++ H
Sbjct: 308 IACFSCQCPFPEPPKPNKEKGKDEAPTKAPAKGVSESGRYKCQVCGNHFCIDCDVFAHMV 367
Query: 404 LHNCPGCES 412
+HNCPGC+S
Sbjct: 368 IHNCPGCQS 376
>gi|449300691|gb|EMC96703.1| hypothetical protein BAUCODRAFT_486555 [Baudoinia compniacensis
UAMH 10762]
Length = 459
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 165/450 (36%), Positives = 243/450 (54%), Gaps = 60/450 (13%)
Query: 10 NGEAEEEDDEEENLNGGLEA------------WERSYADDRSWEALQEDESGFLRPIDNS 57
+GE +EDD E +GG A WE + + + WE LQE G + I
Sbjct: 9 DGEGPDEDDVMEVSDGGRRAMASRPKERAQARWEATASSN--WE-LQEAADGSIEGI-LG 64
Query: 58 AIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEA 117
+ A R+RL T +Q+G+IR+ +V+DLS A E D RP+R ++
Sbjct: 65 GLEEAGKRKRL-----LKDTTPLQRGIIRHTLLVLDLSSAMLEKDLRPTRHLLTINYTIM 119
Query: 118 FVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALD 175
FVRE+F+QNP+SQ+G+ +++G+A ++D+ G+P HI AL + G+ S+QNALD
Sbjct: 120 FVREYFEQNPISQLGIFGMREGLAIRISDMSGNPNDHIAALKQLRSTEPKGNPSLQNALD 179
Query: 176 LVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKH 235
+ L PS+G REV+I+ AL + DPGDI +TI+ C +IR +IGL+A+M IC
Sbjct: 180 MARAALYHTPSHGTREVVIVLGALLSSDPGDIHDTIKACIRDRIRVRIIGLAAQMHICAE 239
Query: 236 LCQETGG----TYSVALDESHSKELILEHAPPP------PAIAEFAIASLIKMGFPQRAG 285
+C++T G Y+VA+DE ++ +++ PP + A+L+ MGFP R
Sbjct: 240 ICRKTNGGDENYYNVAVDEVDYRQQLMDITTPPVLRSTDTEAQKHNQAALLMMGFPSRIV 299
Query: 286 EGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAP 345
E ++C+CH + G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+
Sbjct: 300 EEKPTLCACHGNLTRG-GYLCSRCKAKVCNLPATCPTCDLTLILSTHLARSYHHLFPLRN 358
Query: 346 FDEATPSRLNDLHNISRSTCFGC-----------------------QQSLLASGNKAGLC 382
+ E + +R +I CFGC ++ A G
Sbjct: 359 WVEVSWTRARQEGSIQ---CFGCLTPFPRIPNPQEAVNGTEHDVASARTKRAEGASESSR 415
Query: 383 VACPKCKKHFCLECDIYIHESLHNCPGCES 412
C C +HFC++CD++ HE +HNCPGC+S
Sbjct: 416 YECETCGQHFCIDCDVFCHEVVHNCPGCQS 445
>gi|17555086|ref|NP_499239.1| Protein T16H12.4 [Caenorhabditis elegans]
gi|27923998|sp|P34567.3|TF2H2_CAEEL RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=TFIIH basal transcription factor complex subunit 2
gi|15718246|emb|CAA83139.3| Protein T16H12.4 [Caenorhabditis elegans]
Length = 376
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 228/400 (57%), Gaps = 31/400 (7%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+DDE++ WE YA+ + + L EDE G + + A Y A +R+ R LT
Sbjct: 2 DDDEQKGYT-----WEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKAR---LT 51
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
RI+ G++R++ IVID SR PSR VVV K ++ F+ FF+QNP++QIGL+
Sbjct: 52 KRPERIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLI 111
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
T KD A+ LT + G+ ++L + + C GD S+QNAL L L +P + REV
Sbjct: 112 TCKDRKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREV 171
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+++ SALST DPG+I TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H
Sbjct: 172 VLVISALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDH 231
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK--IGVGYTCPRCK 310
+ L +H PP + A+ + + I +GFP + S C CH + K G+ C +C
Sbjct: 232 LQLLFSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCG 290
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ 370
AR C +P EC +C L LV++P LAR++ HL P++ F++ ++R C+ C+
Sbjct: 291 ARHCSIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACET 341
Query: 371 SLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L G + C C+ FCL+CD +HESLH CPGC
Sbjct: 342 RLSGEGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375
>gi|190348397|gb|EDK40844.2| hypothetical protein PGUG_04942 [Meyerozyma guilliermondii ATCC
6260]
Length = 488
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/453 (34%), Positives = 247/453 (54%), Gaps = 77/453 (16%)
Query: 24 NGGLEAWERSYADDRSWEALQ-EDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQK 82
+GG +WE Y R W+ ++ EDE+G + ++N + R++ + + T Q+
Sbjct: 45 DGGY-SWEDRYK--RPWDIVKDEDEAG--QSLENVIQTMIENRKK---KIMKNPTTPFQR 96
Query: 83 GLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 142
G+IR L ++ID S +E D RP+R + + ++ F+ EFFDQNP+SQ+G+V +++GV+N
Sbjct: 97 GIIRTLIVIIDGSSTMSEKDLRPNRFAMTLQLLQEFIVEFFDQNPISQLGIVMMRNGVSN 156
Query: 143 CLTDLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGH 189
++++ GSP+ HI L + GD S+QN+L++ +L N +
Sbjct: 157 LVSEVNGSPQYHIDKLRSLRSRQHNRFEPKGDPSLQNSLEMARAMLKYNFGTNMDDNKNS 216
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET--------- 240
+EVLIL+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ + +T
Sbjct: 217 KEVLILFGALFTSDPGDIHKTIDNLIKDEIKVKIIGLSAQVSICQQIANKTNNLGSRTTG 276
Query: 241 -----GGTYSVALDESHSKELILEHAPPPPAIAEFAIAS----LIKMGFPQR------AG 285
G YSV ++E+H +EL+++ P P A ++ LIKMGFP + A
Sbjct: 277 ANSSSGSNYSVIMNETHYRELLMDCVVPLPVAATEKRSTVGVPLIKMGFPSKVSPPISAS 336
Query: 286 EGSIS-----ICSCH---------KEVKIG-------VGYTCPRCKARVCELPTECRICG 324
+++ +C+CH V IG +GY CP+C++RVC LPT C CG
Sbjct: 337 NNTVNLDLPVLCACHPTNGSLESKDAVTIGAESSTSIIGYQCPQCRSRVCHLPTICPTCG 396
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
L L+ S HLARSYHHL P+ + E + + + C+GC +G G A
Sbjct: 397 LMLILSTHLARSYHHLVPLREYKEVPAA-----DHYEGTHCYGCLLKFPEAGGPDGPLRA 451
Query: 385 -----CPKCKKHFCLECDIYIHESLHNCPGCES 412
CP C + FC++CD+++HE+LHNCPGCES
Sbjct: 452 SSRYRCPTCARDFCIDCDVFVHETLHNCPGCES 484
>gi|339258242|ref|XP_003369307.1| general transcription factor IIH subunit 2 [Trichinella spiralis]
gi|316966476|gb|EFV51048.1| general transcription factor IIH subunit 2 [Trichinella spiralis]
Length = 403
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/385 (39%), Positives = 224/385 (58%), Gaps = 29/385 (7%)
Query: 41 EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAE 100
E L++D+SG ++ +AI H R+ + R ++ G++R+L I++D S E
Sbjct: 33 EVLEQDDSGSIQS-SVAAITHLAKRKHIIDR-----VKGVRLGILRHLCILLDCSSVMIE 86
Query: 101 MDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH---IKA 157
D PSR + V K + FV +FFDQNP+SQI ++T KD + L D GS H +KA
Sbjct: 87 KDLLPSRFISVIKALSLFVDDFFDQNPISQISIITAKDKKTDKLVDFTGSARKHKEFLKA 146
Query: 158 LMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES 217
+ ++ SG+ S+QN+L+ + +L +PS+ REVL++ +LSTCDPGDI E+++ K +
Sbjct: 147 IAEEIP-SGEFSLQNSLETANEMLRHMPSHSSREVLVIMGSLSTCDPGDIEESLEILKRN 205
Query: 218 KIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIK 277
IRC+ I LSAEM+ICK + + T G Y+V +DE K L+ A PP A + A+LI+
Sbjct: 206 NIRCNFIALSAEMYICKRIAKATNGKYAVIIDEDDLKTLLSVFALPPVATTQLG-ANLIR 264
Query: 278 MGF--------PQRAGEGSISICSCHKEVKIG----VGYTCPRCKARVCELPTECRICGL 325
MG ++ G I H E IG VG+ CP+C + C +P EC+ICGL
Sbjct: 265 MGNSDFRRGLKTRKVGHFVFGIHMKHGE-GIGKLTCVGFICPQCNFKYCFVPMECQICGL 323
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVAC 385
L S+PHLARSY HL+PI PF+E + D H C GC S + + C
Sbjct: 324 VLASAPHLARSYQHLYPILPFEE----KAIDKHMKKELYCAGC-FSAIEVKVMFDVSYVC 378
Query: 386 PKCKKHFCLECDIYIHESLHNCPGC 410
P C++ FC+ CD+ IHE++H+CPGC
Sbjct: 379 PGCRQDFCINCDLLIHETMHSCPGC 403
>gi|268573216|ref|XP_002641585.1| Hypothetical protein CBG09887 [Caenorhabditis briggsae]
Length = 376
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 161/400 (40%), Positives = 229/400 (57%), Gaps = 31/400 (7%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+DDE++ WE YA+ + E L EDE G + + A Y A +R+ R LT
Sbjct: 2 DDDEQKGYT-----WEAGYAEGLNINEVLVEDEGGSIE--KSIAKYVADSKRKAR---LT 51
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
+I+ G++R++ IVID SR PSR VVV K ++ F+ FF+QNP++QIGL+
Sbjct: 52 KRPEKIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQQFLERFFEQNPIAQIGLI 111
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
T KD A+ LT + G+ ++L + + C GD S+QNAL L L +P + REV
Sbjct: 112 TCKDRKADRLTMMTGNIRILKESLSSLTEAFCGGDFSLQNALQLACVNLKGMPGHVSREV 171
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+I+ +ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H
Sbjct: 172 VIVMAALSSIDPGNIFSTIETMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDH 231
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK-IGV-GYTCPRCK 310
L +H PP + A+ + + I +GFP + S C CH + K I + G+ C +C
Sbjct: 232 LHLLFSKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPISLRGFICTQCG 290
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ 370
AR C +P EC +C L LV++P LAR++ HL P+A F + ++R +C+ C+
Sbjct: 291 ARHCSIPAECPVCKLTLVAAPQLARAFRHLQPLAAFKQI---------EVTRGSCYACET 341
Query: 371 SLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
G + C KC+ FCL+CD +HESLH CPGC
Sbjct: 342 RFSDEGFR------CEKCRLVFCLDCDTLLHESLHVCPGC 375
>gi|291224884|ref|XP_002732433.1| PREDICTED: general transcription factor IIH, polypeptide 2, 44kD
subunit-like [Saccoglossus kowalevskii]
Length = 593
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 211/365 (57%), Gaps = 58/365 (15%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DDE E WE Y +R+WEA++EDE+G L+ + + I H RRRL R
Sbjct: 2 DDENEKTY----IWEGDY--ERTWEAIKEDETGSLQTVVDD-ILHRTKRRRLLDRP---- 50
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
A ++ G++ +E F+ E+FD NP+SQ+G++T
Sbjct: 51 -ANVRLGML-----------------------------LEHFLEEYFDHNPISQVGILTT 80
Query: 137 KDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
+ AN LT+LGG+P+ HI AL C + S+QNAL+L L +P + REVL+
Sbjct: 81 SNKRANRLTELGGNPKRHIAALQKCVDKQCLKEPSLQNALELAATTLRHVPGHASREVLV 140
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ +L+TCDPG+I +TI+ K+ IRCSVIGLSA++ +CK LC ET G+YSV LDE H K
Sbjct: 141 ILGSLTTCDPGNIHDTIKSMKDLNIRCSVIGLSADVRVCKRLCSETQGSYSVILDEPHFK 200
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQ---RAGEGSI---SICSCHKEVKIGV-----G 303
E++LEH PP A A +SLI+MGFPQ A + + S+C CH + K G
Sbjct: 201 EVLLEHIKPPLATASTE-SSLIRMGFPQHQLHAEKDKLEKPSMCMCHLDSKSTQGFSTGG 259
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+CK++ CELP EC+ CGL LVS+PHLARS+HHLFP+ F E +L+DL
Sbjct: 260 YFCPQCKSKYCELPIECKACGLTLVSAPHLARSFHHLFPLESFQEI---QLSDLQESDSR 316
Query: 364 TCFGC 368
C C
Sbjct: 317 VCLSC 321
>gi|452824298|gb|EME31302.1| transcription initiation factor TFIIH subunit H2 isoform 2
[Galdieria sulphuraria]
Length = 334
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 212/334 (63%), Gaps = 12/334 (3%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
DD+E+ + L +WE+ RSWE L+EDE+G ++ D S+ ++ +R+ +
Sbjct: 2 DDDEKPESLTLYSWEQDIV--RSWETLEEDETGKIK--DLSSFERSRVKRKRKN-----T 52
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
+++GLIR+L +++DLSR A E D +PSR V + F+ +F++NP+SQ+ +V +
Sbjct: 53 QQNVRRGLIRFLVLILDLSREAKETDVKPSRGEVCLSCAQKFLYSYFNENPISQLAVVVL 112
Query: 137 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
+DGVA L+ +G +P H + + + G G+ S+QN LD+ LL+ IPSYG REVLI
Sbjct: 113 RDGVAEKLSSMGSNPRQHSEVVKNANQKGFYGNCSLQNGLDVALSLLHSIPSYGSREVLI 172
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
LY+++S+CDPGDI +TI+K ++ +IRC+VIG++AE++I K+L T G+Y V ++ESH
Sbjct: 173 LYNSISSCDPGDIRQTIEKLEKERIRCNVIGMAAELYILKYLAARTHGSYFVCMNESHLL 232
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
EL+ + P I +L++MGFP +C K ++ V + CPRC+
Sbjct: 233 ELLEDFVVPSALIENNTKTALVRMGFPTLKAYKEPKVCLNDKVLRNQV-FVCPRCECCYG 291
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE 348
E+P EC +CGL LVSS LARSYHHLFP+A F E
Sbjct: 292 EIPIECVLCGLILVSSSQLARSYHHLFPVANFHE 325
>gi|392593840|gb|EIW83165.1| Ssl1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 375
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 213/332 (64%), Gaps = 26/332 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE SY RSW+ +QEDE+G L+ A+ + R R R L I++ +IR+L
Sbjct: 53 TWEASYT--RSWDTVQEDEAGSLQ----GAV--EDWVARSRRRRLLAPANAIRRAIIRHL 104
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++IDLS + + D RP+R + + F+ E+FDQNPL QIG+V ++ GV + ++
Sbjct: 105 ILLIDLSSSMLDRDMRPTRFDLTLEYTREFITEWFDQNPLGQIGVVGMRAGVGERIGEMS 164
Query: 149 GSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ + ++ K+ +G+ S+QNA+++ ++ +P++ RE+LI+ +L+TCDPG+
Sbjct: 165 GNPQEVLGSIADRHKIEPTGEPSLQNAIEMARNGMSHLPTHSSREILIVIGSLTTCDPGN 224
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I +T+ C ++KIR SV+ L+AEM IC+ LC +TGG + VAL+E H K+L+ E PPP
Sbjct: 225 IHDTLDSCVKNKIRVSVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELVPPP-- 282
Query: 267 IAEFAI-----------ASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVC 314
A+ A+ A L+ MGFP R + + S+C CH ++K G+ CPRC A+VC
Sbjct: 283 -AQRAVNRAGGGAGSTSADLMMMGFPTRLPDTTPPSLCVCHSDLK-SEGFLCPRCMAKVC 340
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPF 346
++PT+C ICGL +VSSPHLARSYHHLFP+ P+
Sbjct: 341 DVPTDCDICGLMIVSSPHLARSYHHLFPVRPY 372
>gi|71022397|ref|XP_761428.1| hypothetical protein UM05281.1 [Ustilago maydis 521]
gi|46101297|gb|EAK86530.1| hypothetical protein UM05281.1 [Ustilago maydis 521]
Length = 539
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 230/430 (53%), Gaps = 70/430 (16%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE +Y RSW+A+ ED+SG L S I ++ RR L+ A +Q+G+IR+L
Sbjct: 98 SWEATY--KRSWDAVAEDDSGSLESTVRSMIEGSKRRRVLKD------VAPVQRGIIRHL 149
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++IDLS + E D RP+R V + FV E+FDQNP+ Q+ ++ + G+A L +G
Sbjct: 150 VLLIDLSASMLEKDMRPNRFDVTLQYAREFVGEYFDQNPIGQLSIIGTRSGIAERLAMMG 209
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+ H +L K L G+ S+QNAL++ L +P+ RE+L ++ +L+TCDPG+
Sbjct: 210 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 269
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP- 265
I +TI + IR S++ L+AE+ + K +C TGGT+SVAL+E H + + E PPP
Sbjct: 270 IHDTIATLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFELVPPPAV 329
Query: 266 ------------AIAEFAI---------------ASLIKMGFPQR-AGEGSISICSCHKE 297
IA+ + L++M FP R + ++C+CH
Sbjct: 330 EGKPRRTRQHMVGIADGSTAMDAEDDDEDGVQAGVDLLQMAFPLRLPAHAAPTLCACHSR 389
Query: 298 VKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI-----APFDEATPS 352
+ G GY CPRC +VC +PT+C +CG+ +V S HLARSYHHLFP+ P+ TP
Sbjct: 390 SR-GSGYLCPRCGVKVCNVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVPWSSVTPD 448
Query: 353 RLNDLHNISRSTCFGC---------QQSLLASGNK----AGLCVA----CPKCKKHFCLE 395
S CF C ++ A+ NK AGL + C +C FCLE
Sbjct: 449 --------SDGACFSCNVPFPSLQERKEKSAAANKALEEAGLSPSSRYRCGRCAIDFCLE 500
Query: 396 CDIYIHESLH 405
CD ++HE LH
Sbjct: 501 CDAFVHEQLH 510
>gi|149248450|ref|XP_001528612.1| suppressor of stem-loop protein 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448566|gb|EDK42954.1| suppressor of stem-loop protein 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 509
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 237/469 (50%), Gaps = 105/469 (22%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA---TARIQKGLI 85
AWE Y RSW+ +++DE G + + A + + R + + Q+G+I
Sbjct: 59 AWEDEY--QRSWDIVKDDEWG-------NGSFEAMVQSIIENRKKKIMKNPSVPYQRGII 109
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R L I ID S+A AE D RP+R+ + ++ FV EFFDQNP+SQIG+V +++GVAN ++
Sbjct: 110 RTLVIAIDGSQAMAEKDLRPTRLSMTLNYLQEFVVEFFDQNPISQIGIVLMRNGVANLVS 169
Query: 146 DLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGHREV 192
++ G P+ HI L K GD S+QN L++ LL + + +E+
Sbjct: 170 EVSGLPQYHIDKLRQLKARQHNKFEPKGDPSLQNTLEMARSLLKFNFGTSSNNTKNSKEI 229
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG--------GTY 244
L++ +L T DPG+I +TI+ + +I+ VIGLSA++ IC+ L T Y
Sbjct: 230 LVVLGSLFTSDPGNIHKTIEGLVKDEIKVRVIGLSAQVAICQELVNRTNHEPKNTMSKNY 289
Query: 245 SVALDESHSKELILEHAPPPPAIAEF------------AIASLIKMGFPQRA-------- 284
V ++E H KEL+++ P P EF A +IKMGFP +A
Sbjct: 290 GVIMNEYHFKELLMDCVTPLPLTEEFRKPTESTNQGGTAGVPVIKMGFPSKAQPNVTSAI 349
Query: 285 -----------------GEGS--------ISICSCHKEVKIGVGYTCPRCKARVCELPTE 319
+GS +S S + + +GY CP+CK++VC LPT
Sbjct: 350 GNTEFTVEFPNLNASYPTQGSAESKDVIEVSNNSLRQSASLIIGYRCPQCKSKVCNLPTI 409
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ---------- 369
C +CGL L+ S HLARSYHHL P+AP+ E D C+GCQ
Sbjct: 410 CPVCGLMLILSTHLARSYHHLVPLAPYVEVEVKSAYD-----SEECYGCQLRFPKGVDLK 464
Query: 370 ------QSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
S+++S K CPKCKK FC+ CD+++HE LHNCPGCE+
Sbjct: 465 VEKKSLDSMISSRYK------CPKCKKDFCINCDVFVHEVLHNCPGCEN 507
>gi|390602659|gb|EIN12052.1| Ssl1-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 377
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 208/328 (63%), Gaps = 19/328 (5%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE SY RSW+ +QEDE+G L + + R L I++ +IR+L
Sbjct: 56 AWEASYT--RSWDMVQEDETGSLTAAVQDLVARGRRR------RLLGPGGAIRRTIIRHL 107
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+DLS + + D RP+R + + F+ E+FDQNPL QIG+V ++ GV + +
Sbjct: 108 ILVLDLSSSMTDRDMRPTRFGLTLEYAREFITEWFDQNPLGQIGIVGMRAGVGERIGQMS 167
Query: 149 GSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P+ +KA+ K+ +G+ S+QNA+++ ++ +P++ +E+LI++ +L+T DPG+
Sbjct: 168 GNPQDVLKAISERHKMEPNGEPSLQNAIEMARSSMSHLPTHSSKEILIVFGSLTTVDPGN 227
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP- 265
I +T+ C + +IR S++ L+AEM IC+ +C +TGG + VA++E H K+L+ E PPP
Sbjct: 228 IHDTLDACIKDRIRISIVALAAEMKICREICDKTGGQFGVAMNEGHYKDLLFELIPPPAQ 287
Query: 266 ------AIAEFAIASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVCELPT 318
A + A A L+ MGFP R + S S+C CH E+K G+ CPRC A+VC++PT
Sbjct: 288 RALTSKAGSGGATADLMIMGFPTRLPDTSPPSLCVCHSELK-SEGFLCPRCLAKVCDVPT 346
Query: 319 ECRICGLQLVSSPHLARSYHHLFPIAPF 346
+C ICGL +VSSPHLARSYHHLFP+ P+
Sbjct: 347 DCDICGLMIVSSPHLARSYHHLFPVKPY 374
>gi|448514642|ref|XP_003867164.1| RNA polymerase transcription factor TFIIH core component [Candida
orthopsilosis Co 90-125]
gi|380351502|emb|CCG21726.1| RNA polymerase transcription factor TFIIH core component [Candida
orthopsilosis Co 90-125]
Length = 511
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 240/480 (50%), Gaps = 96/480 (20%)
Query: 6 RSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYR 65
RS+ NGE + + NG AWE Y RSW+ +++DE G S + A +
Sbjct: 53 RSQHNGEVSDL----KRANG--YAWEDEY--QRSWDIVKDDELG-------SGSFEAMVQ 97
Query: 66 RRLRGRSLTVA---TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREF 122
+ R + + Q+G+IR L I++D + A AE D RP+R+ + + FV EF
Sbjct: 98 TIIENRKKKIMKNPSTPFQRGIIRTLVIIVDGTLAMAEKDLRPTRLSLTLNYLSEFVVEF 157
Query: 123 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSIQNALD 175
FDQNP+SQ+G++ +++GVAN ++++ GSP+ HI L K GD S+QN L+
Sbjct: 158 FDQNPISQLGIILMRNGVANLISEVSGSPQYHIDRLKQLKARQHNKYEPKGDPSLQNCLE 217
Query: 176 LVHGLLN------QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE 229
+ LL S +EVL+++ +L T DPGDI +TI+ + I+ SVIGLSA+
Sbjct: 218 MARSLLKFNFGSASNNSKNSKEVLLVFGSLFTSDPGDIHKTIESLVKDNIKVSVIGLSAQ 277
Query: 230 MFICKHLCQETGGT--------YSVALDESHSKELILEHAPPPP------AIAEFAIASL 275
+ IC+ L T Y V ++E+H KEL+++ P P E L
Sbjct: 278 VAICQELVNRTNNEPRNSSSKHYGVIMNETHFKELLMDCVTPLPLPESEETKVETKGVPL 337
Query: 276 IKMGFPQRAGEGSISICSCHK------------------------EVKIGV------GYT 305
IKMGFP + + S + EV G+ GY
Sbjct: 338 IKMGFPSKVQPNATSTIGNSEYTVEFPRLNASYPTQGSNDSRDIVEVNAGLVTSPSFGYQ 397
Query: 306 CPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE--ATPSRLNDLHNISRS 363
CP+CK++VC LPT C +CGL L+ S HLARSYHHL P+AP+ E +PS D
Sbjct: 398 CPQCKSKVCNLPTICPVCGLMLILSTHLARSYHHLVPLAPYKEIPVSPSYDTDF------ 451
Query: 364 TCFGCQQSLLASGNKAGLCVA-----------CPKCKKHFCLECDIYIHESLHNCPGCES 412
C+GCQ SG K+ C C FC+ CD+++HE LHNCPGCE+
Sbjct: 452 -CYGCQLK-FPSGTKSTKETKTIDSITSSRYRCTNCNNDFCINCDVFVHEVLHNCPGCEN 509
>gi|403414452|emb|CCM01152.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 219/356 (61%), Gaps = 30/356 (8%)
Query: 6 RSRLNGEAEEEDDEEENLNGGLE-----AWERSYADDRSWEALQEDESGFLRPIDNSAIY 60
R++ G+ + D +++ G AWE SY RSW+ +QEDE+G L+ I
Sbjct: 30 RTKGKGKGKAIDRRQKDKGKGKASEQPYAWEASYT--RSWDTVQEDEAGSLQGAVEDLIA 87
Query: 61 HAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVR 120
+ RR L ATA I++ +IR+L +++DLS A + D RP+R ++ + F+
Sbjct: 88 RGRRRRLL-----APATA-IRRAIIRHLVLLLDLSSAMMDRDMRPTRFDLMLQYAREFIT 141
Query: 121 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGL 180
E+FDQNPL QIG+V ++ G+ N L E H KL +G+ S+QNA+D+
Sbjct: 142 EWFDQNPLGQIGIVGMRGGIGNPQDVLKAISERH------KLEPNGEPSLQNAIDMARAS 195
Query: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET 240
+ +P++ RE+LI++ +L+TCDPG+I +++ C + +IR SV+ L+AEM IC+ LC +T
Sbjct: 196 MGHLPTHSSREILIIFGSLTTCDPGNIHDSLDDCVKDRIRISVVALAAEMKICRELCDKT 255
Query: 241 GGTYSVALDESHSKELILEHAPPPP--AIAEF-------AIASLIKMGFPQRAGEGSI-S 290
GG + VAL+E H K+L+ E PPP A+A A L+ MGFP R + S S
Sbjct: 256 GGQFGVALNEGHFKDLLFELIPPPAQRAVARTKGGPAGNPSADLMMMGFPTRLPDTSAPS 315
Query: 291 ICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPF 346
+C+CH ++K G+ CPRC A+VC++PT+C ICGL +VSSPHLARSYHHLFP+ +
Sbjct: 316 LCACHSQLK-SEGFLCPRCCAKVCDVPTDCDICGLMIVSSPHLARSYHHLFPVKTY 370
>gi|380482556|emb|CCF41168.1| hypothetical protein CH063_11526 [Colletotrichum higginsianum]
Length = 480
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 229/431 (53%), Gaps = 70/431 (16%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
RSWE + E G L A A+ RRRL T +Q+G+IR+L +V+D+S A
Sbjct: 48 RSWEEVTEGADGSLAV---GASLEAEKRRRL-----LRDTTPLQRGIIRHLVLVLDMSFA 99
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
E D P+R V FV+E+F+QNP+SQ+ ++ ++DGVA ++D+ G+P H++
Sbjct: 100 MTEKDMLPNRYRVAWAYAADFVKEYFEQNPISQLAIIGMRDGVAIRISDMSGNPTDHLEK 159
Query: 158 LMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
L G SG+ S+QNAL++ G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 160 LKTFEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIVFGALLSSDPGDIHDTITSLI 219
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPA-IAEF 270
+IR S++GL+A++ IC LC T YSV ++++H ++L+L PP A
Sbjct: 220 ADRIRVSIVGLAAQVAICAELCSRTNAGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAAQ 279
Query: 271 AIASLIKMGFPQRA---GEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQL 327
+ ASL+ MGFP R GE + ++C+CH + GY C RC RVC LP EC C L L
Sbjct: 280 STASLLMMGFPSRTLAQGEAT-AVCACHNK-PAREGYLCTRCGTRVCRLPIECPACSLTL 337
Query: 328 VSSPHLARSYHHLFPI-----APFDEATPSRLNDLHNISRSTCFGCQQSL---------- 372
+ S HLARSYHHLFP+ + EAT S+ C+ C +
Sbjct: 338 ILSTHLARSYHHLFPLRNWVEVLWAEATKSK----------ACYSCLTTFPEPPKASRKK 387
Query: 373 ------------------------LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCP 408
L +++G C C HFC++CD+Y HE +HNCP
Sbjct: 388 DKDKDSDGVPTTTPVAPTPVIASELKGVSESGR-YGCTVCGNHFCIDCDVYAHEVIHNCP 446
Query: 409 GCESLRQSNPV 419
GC+S + P+
Sbjct: 447 GCQSDTRGAPM 457
>gi|344233967|gb|EGV65837.1| hypothetical protein CANTEDRAFT_118624 [Candida tenuis ATCC 10573]
Length = 488
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 160/453 (35%), Positives = 242/453 (53%), Gaps = 77/453 (16%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
G AWE Y R+W+ +++D+SG + +++ + R++ + + TA Q+G+
Sbjct: 47 NGAYAWEDEYQ--RTWDIVKDDDSG--QTLESLIQNMIESRKK---KIMKNPTAPYQRGI 99
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR L +VID S E D RP+R ++ ++ FV EFFDQNP+SQ+G+V +++G+++ +
Sbjct: 100 IRTLVVVIDGSSIMLEKDLRPNRFSMMLSLLQEFVVEFFDQNPISQLGIVLMRNGISDVV 159
Query: 145 TDLGGSPESH---IKALMGK----LGCSGDSSIQNALDLVHGLL------NQIPSYGHRE 191
+D+ GSP+ H I+ L GK GD S+QNAL+L LL N + +E
Sbjct: 160 SDVNGSPQFHLDKIRQLRGKQHNRFEPKGDPSLQNALELSRSLLRYNFGNNINDTKNSKE 219
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT-------- 243
+LI++ AL T DPGDI +TI + I+ VIGLSA++ IC+ + +T T
Sbjct: 220 ILIIFGALFTSDPGDIHKTISSLVKDNIKVKVIGLSAKVAICQEIVNKTNHTSNNFNNPN 279
Query: 244 YSVALDESHSKELILEHAPPPPAIAE-------FAIASLIKMGFPQRAGEGS-------- 288
Y V ++ESH KEL+++ P P E L+KMGFP +
Sbjct: 280 YGVIMNESHFKELLMDCVVPLPITVEQQKEIEASKSVPLLKMGFPTKVQPTLSSSSGGHS 339
Query: 289 ---ISICSCH--------------KEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSP 331
I IC+CH ++ +GY CP+C ++VC LPT C ICGL L+ S
Sbjct: 340 LDFIQICACHSGSRTENGSDAAAIQQSSSVIGYRCPQCSSKVCSLPTVCPICGLMLILST 399
Query: 332 HLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL------LASGNKAGLCVA- 384
HLARSYHHL P+ ++E P + + S C+GC + +K L
Sbjct: 400 HLARSYHHLVPLVDYEEV-PVK----GSYPSSFCYGCLLQFPEGIENIHKDSKEKLETMS 454
Query: 385 -----CPKCKKHFCLECDIYIHESLHNCPGCES 412
C KCK FC++CD+++HE+LHNCPGCE+
Sbjct: 455 SSRYRCKKCKNDFCIDCDVFVHETLHNCPGCEN 487
>gi|354547034|emb|CCE43767.1| hypothetical protein CPAR2_214110 [Candida parapsilosis]
Length = 498
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 162/454 (35%), Positives = 234/454 (51%), Gaps = 84/454 (18%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA---TARIQKGLI 85
AWE Y RSW+ +++DESG S + A + + R + + Q+G+I
Sbjct: 57 AWEDEY--QRSWDIVKDDESG-------SGSFEAMVQSIIENRKKKIMKNPSTPFQRGII 107
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R L I++D + A AE D RP+R+ + + FV EFFDQNP+SQ+G++ +++GVAN ++
Sbjct: 108 RTLVIIVDGTLAMAEKDLRPTRLSLTLNYLSEFVVEFFDQNPISQLGIILMRNGVANLIS 167
Query: 146 DLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLLN------QIPSYGHREV 192
++ GSP+ HI L K GD S+QN L++ LL S +E+
Sbjct: 168 EVSGSPQYHIDRLRQLKARQHNKYEPKGDPSLQNCLEMARSLLKFNFGSASNNSKNSKEI 227
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG--------GTY 244
L+++ +L T DPGDI +TI + I+ SVIGLSA++ IC+ L +T Y
Sbjct: 228 LLVFGSLFTSDPGDIHKTIDSLVKDNIKVSVIGLSAQVAICQELVNKTNHESRNSSSKHY 287
Query: 245 SVALDESHSKELILEHAP--PPPAIAEFAIAS----LIKMGFPQRAGEGSISICSCHK-- 296
V ++E+H KEL+++ P P E I + LIKMGFP + + S +
Sbjct: 288 GVIMNETHFKELLMDCVTPLPLPESEEIKIETKGVPLIKMGFPSKVQPNATSTIGNSEYT 347
Query: 297 ----------------------EVKIGV------GYTCPRCKARVCELPTECRICGLQLV 328
EV G+ GY CP+CK++VC LPT C +CGL L+
Sbjct: 348 VEFPQLNASYPTQGSNDSKDVVEVNSGLAMSQTFGYQCPQCKSKVCNLPTICPVCGLMLI 407
Query: 329 SSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ-------QSLLASGNKAGL 381
S HLARSYHHL P+AP+ E S D R C+GCQ +S +G L
Sbjct: 408 LSTHLARSYHHLVPLAPYKEVPLSTSYD-----REYCYGCQLIFPSGVKSTKNTGTIDSL 462
Query: 382 CVA---CPKCKKHFCLECDIYIHESLHNCPGCES 412
+ C C FC+ CD++IHE LHNCPGCE+
Sbjct: 463 TSSRYRCANCCNDFCINCDVFIHEVLHNCPGCEN 496
>gi|150864125|ref|XP_001382831.2| hypothetical protein PICST_29472 [Scheffersomyces stipitis CBS
6054]
gi|149385381|gb|ABN64802.2| component of RNA polymerase transcription factor [Scheffersomyces
stipitis CBS 6054]
Length = 489
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 158/457 (34%), Positives = 239/457 (52%), Gaps = 85/457 (18%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE Y RSW+ +++DESG R ++ + R++ + + T Q+G+IR L
Sbjct: 44 SWEDEYQ--RSWDIVKDDESGG-RSLETIVRTIIENRKK---KIMKNPTTPFQRGIIRTL 97
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++ID S +E D RPSR + + ++ FV EFFDQNP+SQ+G++ +++GV+N ++++
Sbjct: 98 IVIIDGSATMSEKDLRPSRFSMTLQLLQDFVVEFFDQNPISQLGIILMRNGVSNLVSEVS 157
Query: 149 GSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGHREVLIL 195
GSP+ HI + + GD S+QN+L++ LL N + +EVL++
Sbjct: 158 GSPQYHIDKIRQLKSRQHNRYEPKGDPSLQNSLEMARSLLKFNFGNNANDTKNSKEVLLI 217
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG--------GTYSVA 247
+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ L T Y V
Sbjct: 218 FGALFTSDPGDIHKTIDNLVKDEIKVKIIGLSAQVAICQDLVNRTNHQQKNISSKNYGVI 277
Query: 248 LDESHSKELILEHAPPPP----AIAEFAIAS----LIKMGFPQRAGEGSISICSCHK--- 296
++ESH KEL ++ P P + E A A+ +IKMGFP + S + ++
Sbjct: 278 MNESHFKELFMDCVTPLPITTSQVNENAEANKGVPIIKMGFPTKIQPVLTSTLASNEYTI 337
Query: 297 --------------------EVKIG----------VGYTCPRCKARVCELPTECRICGLQ 326
E+ G +GY CP+CK++VC LPT C +CGL
Sbjct: 338 EFPQLSASDPTHGLDDNQVVEINNGTDSSIQATNVIGYQCPQCKSKVCNLPTVCPVCGLM 397
Query: 327 LVSSPHLARSYHHLFPIAPFDEA-TPSRLNDLHNISRSTCFGC----------QQSLLAS 375
L+ S HLARSYHHL P+ PF E S+ N H CFGC +S +
Sbjct: 398 LILSTHLARSYHHLVPLVPFKEVPVSSKYNSKH------CFGCLLKFPKGVSNTKSKSSL 451
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
N C KC FC++CD++IHE+LHNCPGCE+
Sbjct: 452 ENMTSSRYRCMKCSHDFCIDCDVFIHETLHNCPGCEN 488
>gi|146414033|ref|XP_001482987.1| hypothetical protein PGUG_04942 [Meyerozyma guilliermondii ATCC
6260]
Length = 488
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/453 (34%), Positives = 244/453 (53%), Gaps = 77/453 (16%)
Query: 24 NGGLEAWERSYADDRSWEALQ-EDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQK 82
+GG +WE Y R W+ ++ EDE+G + ++N + R++ + + T Q+
Sbjct: 45 DGGY-SWEDRYK--RPWDIVKDEDEAG--QSLENVIQTMIENRKK---KIMKNPTTPFQR 96
Query: 83 GLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 142
G+IR L ++ID S E D RP+R + + ++ F+ EFFDQNP+SQ+G+V +++GV+N
Sbjct: 97 GIIRTLIVIIDGSLTMLEKDLRPNRFAMTLQLLQEFIVEFFDQNPISQLGIVMMRNGVSN 156
Query: 143 CLTDLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGH 189
++++ G P+ HI L + GD +QN+L++ +L N +
Sbjct: 157 LVSEVNGLPQYHIDKLRLLRSRQHNRFEPKGDPLLQNSLEMARAMLKYNFGTNMDDNKNS 216
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET--------- 240
+EVLIL+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ + +T
Sbjct: 217 KEVLILFGALFTSDPGDIHKTIDNLIKDEIKVKIIGLSAQVSICQQIANKTNNLGSRTTG 276
Query: 241 -----GGTYSVALDESHSKELILEHAPPPPAIAEFAIAS----LIKMGFPQR------AG 285
G YSV ++E+H +EL+++ P P A ++ LIKMGFP + A
Sbjct: 277 ANSSSGSNYSVIMNETHYRELLMDCVVPLPVAATEKRSTVGVPLIKMGFPLKVLPPISAS 336
Query: 286 EGSIS-----ICSCH---------KEVKIG-------VGYTCPRCKARVCELPTECRICG 324
+++ +C+CH V IG +GY CP+C++RVC LPT C CG
Sbjct: 337 NNTVNLDLPVLCACHPTNGSLESKDAVTIGAESSTSIIGYQCPQCRSRVCHLPTICPTCG 396
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
L L+ S HLARSYHHL P+ + E + + + C+GC +G G A
Sbjct: 397 LMLILSTHLARSYHHLVPLREYKEVPAA-----DHYEGTHCYGCLLKFPEAGGPDGPLRA 451
Query: 385 -----CPKCKKHFCLECDIYIHESLHNCPGCES 412
CP C + FC++CD+++HE+LHNCPGCES
Sbjct: 452 SSRYRCPTCARDFCIDCDVFVHETLHNCPGCES 484
>gi|255724012|ref|XP_002546935.1| suppressor of stem-loop protein 1 [Candida tropicalis MYA-3404]
gi|240134826|gb|EER34380.1| suppressor of stem-loop protein 1 [Candida tropicalis MYA-3404]
Length = 505
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/491 (32%), Positives = 243/491 (49%), Gaps = 96/491 (19%)
Query: 2 KNSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYH 61
KN +R E + + NG AWE Y RSW+ +++DESG S +
Sbjct: 32 KNGVSTRTRSSRRGEVSDLKGANG--YAWEDEY--QRSWDIVKDDESG-------SNSFE 80
Query: 62 AQYRRRLRGRSLTVA---TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAF 118
A + + R + + Q+G+IR L I+ID S +E D RP+R+ + ++ F
Sbjct: 81 AMVQSIIENRKKKIMKNPSTPFQRGIIRTLVIIIDGSSVMSEKDLRPNRLSMTLSYLQDF 140
Query: 119 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSIQ 171
V EFFDQNP+S++G++ +++G+AN ++++ GSP+ HI + + GD S+Q
Sbjct: 141 VTEFFDQNPISRLGIILMRNGIANLVSEVSGSPQYHIDKIRQLKARQHNRFEPKGDPSLQ 200
Query: 172 NALDLVHGLL------NQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIG 225
N+L++ LL + +EVLI++ AL T DPGDI TI + +I+ SVIG
Sbjct: 201 NSLEMARSLLKFNFGSTSNNTKNSKEVLIIFGALFTSDPGDIHRTIDNLIKDEIKVSVIG 260
Query: 226 LSAEMFICKHLCQETGGT--------YSVALDESHSKELILEHAPPPP----------AI 267
LSA++ IC+ L T Y V ++ESH KEL+++ P P A
Sbjct: 261 LSAQVAICQELVNRTNKEPRNSQSKHYGVIMNESHFKELLMDSVTPLPLTESEKRLQDAQ 320
Query: 268 AEFAIASLIKMGFPQRAGEGSISICS----------------------CHKEVKIG---- 301
+E +++MGFP + S+ + V+I
Sbjct: 321 SEDGGVPVLRMGFPSKVQPTLTSVVTGTDMIIEFPHLNASFPTQGSEDSKDAVEIQNNRA 380
Query: 302 --------VGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSR 353
+GY CP+CK++VC LPT C +CGL L+ S HLARSYHHL P+A F E +
Sbjct: 381 VAAASSSVIGYQCPQCKSKVCNLPTLCPVCGLMLILSTHLARSYHHLVPLAQFKEVPVAP 440
Query: 354 LNDLHNISRSTCFGCQQSLLASGNKAGLCVA-----------CPKCKKHFCLECDIYIHE 402
+ D CFGCQ G KAG C +C+K FC+ CD+++HE
Sbjct: 441 VYD-----SEFCFGCQLK-FPDGVKAGTQKGSLESMTSSRYRCKRCEKSFCINCDVFVHE 494
Query: 403 SLHNCPGCESL 413
LH CPGCE++
Sbjct: 495 VLHTCPGCENM 505
>gi|219116518|ref|XP_002179054.1| suppressor of stem-loop protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217409821|gb|EEC49752.1| suppressor of stem-loop protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 413
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 233/399 (58%), Gaps = 29/399 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHA--QYRRRLRGRSLTVATARIQKGLIR 86
AWE + + + +A++ED +G + + A + R+RL R+ + +IR
Sbjct: 24 AWEDNRSQNAWDQAVREDATGRIVVASGDTLAQAIRKRRKRLTQNDYAQRNRRVVRDMIR 83
Query: 87 YLYIVIDLSRAAAEMD--FRP-SRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
Y+Y++ID+SR D P +R+ V ++ FV+E++DQNPLSQ+G V +K+G A
Sbjct: 84 YVYVLIDVSRWMRVKDPVLPPGTRIDVTVAHLQHFVQEYYDQNPLSQLGFVLLKNGEAEI 143
Query: 144 LTDLGGSPESHIKAL--MGKLGCS------GDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
LT L S ++H AL + ++ + G+ S+QN L+L L PS+G RE++++
Sbjct: 144 LTQLSSSSKTHKLALDSVAQMAAAEGPSGGGEFSLQNGLELAGRSLGHQPSHGSREIVLV 203
Query: 196 YSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ALSTCDPG ++ ET+ + ++++IR S + L+AE+ +C+ L ET G V LD +H +
Sbjct: 204 TAALSTCDPGYLLTETLPRLRQAQIRVSCLALNAELHVCRKLADETHGVLGVCLDRAHLR 263
Query: 255 ELILEHAPPPPAIAEFAIA-SLIKMGFPQRA-GEGSISICSCHKEVKIG-VGYTCPRCKA 311
+ + PPP + +L++MGFP R +G + + ++ + YTCP C+A
Sbjct: 264 DWLRSQTVPPPTLPSRPHGCALVRMGFPTRIIADGPEFVHATRQQTVLARTAYTCPVCQA 323
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQS 371
+ LP +C +CGLQLV +PHLARS+HHLFP+ PF E P D +S S Q
Sbjct: 324 KNAALPADCAVCGLQLVLAPHLARSFHHLFPVPPFREVQP----DTAVVSNS-----QVP 374
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
++AS L ACP C + FC++CD ++HESLHNCPGC
Sbjct: 375 VVASRQ---LRFACPDCHQVFCVDCDAFLHESLHNCPGC 410
>gi|320585884|gb|EFW98563.1| suppressor of stem-loop protein 1 [Grosmannia clavigera kw1407]
Length = 524
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/429 (36%), Positives = 224/429 (52%), Gaps = 52/429 (12%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
G AWE RSW+ + E E G + ++ A A+ RRR+ T +Q+G+
Sbjct: 77 GQQAAWETV---KRSWDTVGEAEDGQVLGVEFLAA--AEKRRRV-----LRDTTPLQRGI 126
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR++ +V+D+S A + D+ PS V FVR FF+QNP+SQ+ +V ++DGVA +
Sbjct: 127 IRHVVLVLDMSAAMSSRDYLPSCQRVALDCAADFVRAFFEQNPISQLAVVAMRDGVALRV 186
Query: 145 TDLGGSPESHIKALMGKLGC--SGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
+D+GGSP H+ L G G S+QNAL++ G L P++G REVL+++ AL +
Sbjct: 187 SDMGGSPAEHLDRLADWDGVEPQGQPSLQNALEMCRGALFHTPAHGTREVLVVFGALLSS 246
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELIL 258
DP DI +TI +IR S++GL+A++ +C +C T Y+VA + H EL+L
Sbjct: 247 DPADIHDTIAALVADRIRVSIVGLAAKVAVCAEICARTNPGDEAAYAVARHDVHFHELVL 306
Query: 259 EHAPPPPA------IAEFAIASLIKMGFPQR------AGEGSISICSCHKEVKIGVGYTC 306
PP A ASL+ MGFP R AG G +S+C+CH + GY C
Sbjct: 307 AATTPPATRPDDGDAASTGPASLLMMGFPSRAIADTVAGGGGLSVCACHSR-PVREGYGC 365
Query: 307 PRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS-RLNDLHNISRSTC 365
RC A+VC LP EC CGL L+ S HLARSYHHLFP+ + E + + + + C
Sbjct: 366 TRCGAKVCRLPAECPACGLTLILSTHLARSYHHLFPLRSWVEVSWTAAADAVRRRRAVAC 425
Query: 366 FGCQQSL----------------------LASGNKAGLCVACPKCKKHFCLECDIYIHES 403
C SG AC C HFC++CD++ HE
Sbjct: 426 HACLTPFPAVDTAAAAAAAVTAAAAATQTTGSGVSESGRYACEVCGHHFCIDCDVFAHEV 485
Query: 404 LHNCPGCES 412
+HNCPGC+S
Sbjct: 486 IHNCPGCQS 494
>gi|310796716|gb|EFQ32177.1| hypothetical protein GLRG_07321 [Glomerella graminicola M1.001]
Length = 482
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 160/423 (37%), Positives = 231/423 (54%), Gaps = 52/423 (12%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
RSWE + E G L A A+ RRRL T +Q+G+IR+L +V+D+S A
Sbjct: 48 RSWEEVTEGADGSLAV---GASLEAEKRRRL-----LRDTTPLQRGIIRHLVLVLDMSFA 99
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
AE D P+R V FV+E+F+QNP+SQ+G++ ++DGVA ++D+ G+P H++
Sbjct: 100 MAEKDMLPNRYRVAWAYAADFVKEYFEQNPISQLGIIGMRDGVAIRISDMSGNPTDHLEK 159
Query: 158 LMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
L G SG+ S+QNAL++ G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 160 LKTFEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIVFGALLSSDPGDIHDTISSLI 219
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF- 270
+IR S++GL+A++ IC LC T YSV ++++H ++L+L PP
Sbjct: 220 TDRIRVSIVGLAAQVAICAELCSRTNAGDETQYSVCMNDAHFRDLLLATTTPPVTRTVAQ 279
Query: 271 AIASLIKMGFPQRA---GEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQL 327
+ ASL+ MGFP R GE + ++C+CH + GY C RC RVC LP EC C L L
Sbjct: 280 STASLLMMGFPSRTLAQGEAT-AVCACHNK-PAREGYLCTRCGTRVCRLPIECPACSLTL 337
Query: 328 VSSPHLARSYHHLFPI-----APFDEATPSR--------------------------LND 356
+ S HLARSYHHLFP+ + EA S+ +
Sbjct: 338 ILSTHLARSYHHLFPLRNWIEVSWAEAAKSKACYSCLTTFPEPPKTGRRKDKDKDKEKDG 397
Query: 357 LHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQS 416
LH + S L +++G +C C HFC++CD+Y HE +HNCPGC+S +
Sbjct: 398 LHTTAPVAPTPVTASDLKGVSESGR-YSCTVCGNHFCIDCDVYAHEVIHNCPGCQSDTRG 456
Query: 417 NPV 419
P+
Sbjct: 457 APM 459
>gi|294654358|ref|XP_456408.2| DEHA2A01606p [Debaryomyces hansenii CBS767]
gi|199428818|emb|CAG84360.2| DEHA2A01606p [Debaryomyces hansenii CBS767]
Length = 514
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 240/463 (51%), Gaps = 87/463 (18%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE Y R W+ +++DE G R ++ + R++ R+ T Q+G
Sbjct: 64 NGGY-AWEDEYQ--RPWDIVKDDEDG--RSLETIIQTMIENRKKKIMRN---PTTPFQRG 115
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L ++ID S +E D RP+R ++ ++ FV E+FDQNP+SQ+G++ +++GV+N
Sbjct: 116 IIRTLVVIIDGSSVMSEKDLRPTRFSMMLSLLQEFVVEYFDQNPISQLGIIMMRNGVSNL 175
Query: 144 LTDLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGHR 190
++++ GSP+ H+ + K GD S+QNAL++ LL N + +
Sbjct: 176 ISEVNGSPQYHLDKIRQLKSRQHNKYEPKGDPSLQNALEMARSLLMYNFGTNLNDTKNSK 235
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQET---------- 240
E+LI++ AL T DPGDI +TI + +I+ VIGLSA++ IC+ L +T
Sbjct: 236 EILIIFGALFTSDPGDIHKTINSLVKDEIKVKVIGLSAQVAICQELVNKTNNPGKSNTFW 295
Query: 241 ---GGTYSVALDESHSKELILEHAPPPPAIAEFAI-------ASLIKMGFPQR------A 284
G Y V ++E H +EL+++ P P I +IKMGFP + +
Sbjct: 296 SAGGNNYGVIMNEIHFRELLMDCVIPLPVTTNAVIDENNSKEVPIIKMGFPSKIQPVITS 355
Query: 285 GEGSISI-----CSCHKE----------------VKIGVGYTCPRCKARVCELPTECRIC 323
++S+ C+CH + +GY CP+C +VC LPT C IC
Sbjct: 356 STSNLSVDFPQLCACHPTQDSLESKNNDPTATLGTRSVIGYECPQCNNKVCHLPTICPIC 415
Query: 324 GLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC--------QQSLLAS 375
GL L+ S HLARSYHHL P+ + E S + S + C+GC + + +
Sbjct: 416 GLMLILSTHLARSYHHLVPLGDYKEVPVSE-----SYSSTYCYGCLLKFPSGIKNTDVNE 470
Query: 376 GNKAGLC------VACPKCKKHFCLECDIYIHESLHNCPGCES 412
K + C KC+ FC++CD+++HESLHNCPGCE+
Sbjct: 471 DGKTKMDSLTSSRYRCGKCQNDFCIDCDVFVHESLHNCPGCEN 513
>gi|239614970|gb|EEQ91957.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
ER-3]
gi|327356553|gb|EGE85410.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
ATCC 18188]
Length = 525
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 157/438 (35%), Positives = 233/438 (53%), Gaps = 65/438 (14%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
GG E WE S R+WE+L E G + + + +R LR T +Q+G+
Sbjct: 74 GGAE-WEVS----RTWESLVESADGTISATVEGLLEAGKRKRLLRD------TTPLQRGI 122
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR+L +V+DLS A AE D RP+R ++ + + FV EFF+QNP+SQ+G++ ++DG+A +
Sbjct: 123 IRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRI 182
Query: 145 TDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
+D+ G+P HI A+ + G S+QN L++ G L + P++G REV I++ AL +
Sbjct: 183 SDMSGNPTDHILAIQSLRPKDPKGMPSLQNTLEMARGALFRTPTHGTREVFIIFGALLSS 242
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELIL 258
DPGDI +TI KIR S+IGL+A++ IC+ +C T Y VAL+E H +EL +
Sbjct: 243 DPGDIHKTINTLVADKIRVSIIGLAAQVAICRDICARTNNGDDSGYGVALNEQHFRELFM 302
Query: 259 E--------------HAPPPPAIAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGV 302
++ +SL+ MGFP R + + ++C+CH +
Sbjct: 303 NVTTPPATTVAPTPTTTKEETKTSQTTTSSLLMMGFPSRTLSPTTTPTLCACHSKPS-RT 361
Query: 303 GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISR 362
GY C RC A+VC LPT C CGL L+ S HLARSYHHLFP+ + E + R + S
Sbjct: 362 GYLCSRCGAKVCTLPTSCPCCGLTLILSTHLARSYHHLFPLMNWVEVSWRRAARKRSAS- 420
Query: 363 STCFGCQQSL------------------------LASGNKAGLCVA----CPKCKKHFCL 394
CF C +G+ V+ CP C+ HFC+
Sbjct: 421 --CFACAVGFPRVPKQFSGGEQEGAGEEQGEGEGETVKGPSGISVSGRYECPVCECHFCI 478
Query: 395 ECDIYIHESLHNCPGCES 412
+CD++ HE +HNCPGC+S
Sbjct: 479 DCDVFAHEVVHNCPGCQS 496
>gi|358340016|dbj|GAA47968.1| transcription initiation factor TFIIH subunit 2 [Clonorchis
sinensis]
Length = 929
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 211/364 (57%), Gaps = 27/364 (7%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIY--HAQYRRRLRGRSLTVATARIQKGLIRY 87
WE Y +++W A++ED++G L ++ H+Q R++ R R+ ++ G++R+
Sbjct: 535 WESGY--EKTWNAIREDDAGRLVTTLEQLVHDAHSQLRKK-RHRAAVGTEGFVRLGMMRH 591
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
L+++ID+S A D +P+R+V + V FVR++FDQNP+SQ+G++ D A LT+L
Sbjct: 592 LFLIIDMSSAMQVQDLKPTRLVCTLRAVAEFVRDYFDQNPISQLGIIVTADRQAERLTEL 651
Query: 148 GGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
G+P H+ AL + CSG+ S+QNAL L L P H E+L++ ++L+TCDPG
Sbjct: 652 SGNPRCHLAALETLFTRPCSGEPSLQNALTLAESRLKYTPH--HSEILVIMASLTTCDPG 709
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP 265
DI +TIQ + IRCSV+ L+ E+F+ + L Q T G + V LDE H K ++ PPP
Sbjct: 710 DIHKTIQSLAANHIRCSVVSLAVEVFVYRALAQITQGQFHVILDEPHLKTVLKNFVPPPA 769
Query: 266 AIAEFAIASLIKMGFPQRAG----EGSISICSCHKEVKIGVG------YTCPRCKARVCE 315
A + A A+LI+M FP S +C CH + Y CPRC A CE
Sbjct: 770 ATVD-APATLIRMAFPHSETFDLRNFSTVLCMCHLNQQGSSTDSSHPQYACPRCCAAYCE 828
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLH--NISRS-----TCFGC 368
LP EC +CGL LV++PHLAR+YHHLFP+ F +P+ L + + R+ TC GC
Sbjct: 829 LPVECTVCGLTLVAAPHLARAYHHLFPLDAFTPISPAELRQTNPDQLPRTETGIITCAGC 888
Query: 369 QQSL 372
L
Sbjct: 889 DVVL 892
>gi|223999581|ref|XP_002289463.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974671|gb|EED93000.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 422
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/427 (35%), Positives = 231/427 (54%), Gaps = 55/427 (12%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRR---LRGRSLTVATARIQKGLIR 86
WE + W +QED G + ++ +Q R+R L L ++ R+ + ++R
Sbjct: 3 WE-AVDSSSMWTDVQEDADGNILLTSSTQSLASQIRQRRHRLASTDLARSSKRLVRHMLR 61
Query: 87 YLYIVIDLSRAAAEMD--FRPSRMVV--VAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 142
++Y+V+D SR + E D P+R+ + + FV E++DQNPL +G+V +DG A
Sbjct: 62 HVYLVLDASRWSREKDPALPPARLRLETIINLASEFVNEYYDQNPLGHLGVVICQDGEAE 121
Query: 143 CLTDLGGSPESHIKAL-------MGKLGCS--GDSSIQNALDLVHGLLNQIPSYGHREVL 193
LT LGGSP+ H AL M + G S G+ S+QN +++ L P YG RE++
Sbjct: 122 MLTTLGGSPKKHKLALGAALVTEMKRRGPSIGGEFSLQNGIEVAGRSLGYAPRYGSREII 181
Query: 194 ILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
++ SAL+TCDPGDI+ ET+ + + IR S + L AE+ ICK L + TGG V +D H
Sbjct: 182 VITSALATCDPGDILGETLPRLLHAGIRVSAVSLQAELHICKKLAEVTGGLAGVCMDSRH 241
Query: 253 SKELILEHAPPPPAIA-------------------EFAIASLIKMGFPQRAGEGSISICS 293
++L++ HA PPP + I + MGFP R + +
Sbjct: 242 LRDLVMGHAIPPPVVNTSKADDGETTTAHNGRNHNHTMICEFVTMGFPSRDDDRRSNRLI 301
Query: 294 CHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSR 353
GY CPRC++R +LP++C +CGL+L+ +PHLAR++HHLFP+ PF+E +
Sbjct: 302 AFART----GYVCPRCRSRCSDLPSDCAVCGLRLILAPHLARTFHHLFPVRPFEELDEAL 357
Query: 354 LNDLHNISRSTCFGCQQSL----LASGNKAG------LCVACPKCKKHFCLECDIYIHES 403
+ N R CFGC + + + S + AG L CP+C FC +CD Y+HE+
Sbjct: 358 VI---NCDR-CCFGCLKVIGCKPMDSTDGAGDEGESILRFQCPECHNAFCPDCDAYLHET 413
Query: 404 LHNCPGC 410
LHNCPGC
Sbjct: 414 LHNCPGC 420
>gi|367035208|ref|XP_003666886.1| hypothetical protein MYCTH_2311995 [Myceliophthora thermophila ATCC
42464]
gi|347014159|gb|AEO61641.1| hypothetical protein MYCTH_2311995 [Myceliophthora thermophila ATCC
42464]
Length = 589
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/346 (42%), Positives = 202/346 (58%), Gaps = 43/346 (12%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE RSWE + E E G I A+ A+ RRRL T Q+G+IR+L
Sbjct: 55 AWEDI---KRSWENVVETEDG---SITIEALIEAEKRRRL-----MRDTTPFQRGIIRHL 103
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+D+S A AE D P+R ++ FVRE+F+QNP+SQ+G+V ++DG+A ++D+G
Sbjct: 104 MLVLDMSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQNPISQLGIVGMRDGIAVRISDMG 163
Query: 149 GSPESHIKALMG---KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
G+P HI+ L + G+ S+QNAL++ G L PS+G REVLI+Y AL + DPG
Sbjct: 164 GNPAEHIEKLRTWAEQQEPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLSSDPG 223
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELIL--- 258
DI +TI K +IR SV+GL+A++ IC+ LC T G +Y+VAL E H +EL L
Sbjct: 224 DIHDTIAKLLNDRIRVSVVGLAAQVAICEQLCTRTNGGDPSSYAVALHEQHFRELFLAAT 283
Query: 259 -----EHAPPPPAIAE--------------FAIASLIKMGFPQR--AGEGSISICSCHKE 297
+ PPPP + ASL+ MGFP R A + +S+C+CH
Sbjct: 284 TPPVTQSTPPPPGAGDGTNNNNNSQQQSQQSQQASLLIMGFPSRALASKDHVSLCACHNR 343
Query: 298 VKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI 343
GY C RC+ +VC LP EC +CGL LV S HLARSYHHLFP+
Sbjct: 344 -PTREGYACTRCRTKVCRLPAECPVCGLTLVLSTHLARSYHHLFPL 388
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 384 ACPKCKKHFCLECDIYIHESLHNCPGCES 412
ACP C HFC++CD++ HE +HNCPGC+S
Sbjct: 486 ACPVCGNHFCIDCDVFAHEMIHNCPGCQS 514
>gi|448096877|ref|XP_004198537.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
gi|359379959|emb|CCE82200.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
Length = 514
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 252/481 (52%), Gaps = 87/481 (18%)
Query: 6 RSRLNGEAEEEDDEEENLNG--GLEAWERSYADDRSWEALQEDESGF--LRPIDNSAIYH 61
R R +G + NL G G +WE Y R+W+ +++D+ G L+ + + I
Sbjct: 46 RGRSSGRQTRGGPMQSNLKGNSGGYSWEDEYQ--RTWDIVKDDDDGVGSLQTLVQTLI-- 101
Query: 62 AQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVRE 121
+ R++ + + + Q+G+IR + ++ID S E D RP+R ++ ++ F+ E
Sbjct: 102 -ESRKK---KIMKNPSTPFQRGIIRTMIVIIDGSEVMLERDLRPTRFSMMLSLLQEFILE 157
Query: 122 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSIQNAL 174
FFDQNP+SQ+G+V +++G+A ++D+ GSP+ HI + + GD S+QN+L
Sbjct: 158 FFDQNPISQMGIVMMRNGIAIRISDVSGSPQYHIDKIRQLKTKQHNRFEPKGDPSLQNSL 217
Query: 175 DLVHGLL-----NQI-PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 228
+L LL N++ + +E+LI++ AL T DPG+I +TI + I+ +IGL+A
Sbjct: 218 ELARSLLMYNFNNKVNDTQNSKEILIIFGALFTSDPGNIHKTIDNLVKDDIKIKIIGLAA 277
Query: 229 EMFICKHLCQETGGT----------YSVALDESHSKELILEHAPPPPAIAEFAI-----A 273
++ IC+ + + T + Y V ++ESH KEL+++ P P +F
Sbjct: 278 QVAICEEIVRRTNSSKTSSSYINTNYGVIMNESHFKELLMDCVIPLPVSEDFEKKEKKGV 337
Query: 274 SLIKMGFPQR-----AGEGSI-----SICSCHKE--------------------VKIGVG 303
LIKMGFP + SI SICSCH + K +G
Sbjct: 338 PLIKMGFPSKIQPSVTSNSSINLNLPSICSCHPDEENDASHSKEAGEAGNGTYSSKKVIG 397
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C +VC+LPT C ICGL L+ S HLARSYHHL P+ + E P+ + +
Sbjct: 398 YKCPQCLNKVCQLPTICPICGLMLILSTHLARSYHHLVPLEAYKEV-PT----MEEYEST 452
Query: 364 TCFGC--------QQSLLASGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCE 411
C+GC + + NK + C KC++ FC++CD++IHE+LHNCPGCE
Sbjct: 453 YCYGCLLKFPSGRKNAQSDDANKIESLTSSRYRCGKCQQDFCIDCDVFIHETLHNCPGCE 512
Query: 412 S 412
+
Sbjct: 513 N 513
>gi|297603026|ref|NP_001053274.2| Os04g0508900 [Oryza sativa Japonica Group]
gi|255675611|dbj|BAF15188.2| Os04g0508900, partial [Oryza sativa Japonica Group]
Length = 173
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 117/154 (75%), Positives = 142/154 (92%)
Query: 97 AAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 156
AA+EMD+RPSRM VVAK E F+REFFDQNPLS +G+VT+KDG+++ LT++GGSPES IK
Sbjct: 1 AASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIK 60
Query: 157 ALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 216
ALMGKL CSG+ S+QNAL+LVHG L+Q+PSYGH+EVL LYSAL+TCDPGDIMETI KCK+
Sbjct: 61 ALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKK 120
Query: 217 SKIRCSVIGLSAEMFICKHLCQETGGTYSVALDE 250
SKIRCSVIGL+AE+FICK+LC+ETGG+Y+VALDE
Sbjct: 121 SKIRCSVIGLAAEIFICKYLCEETGGSYTVALDE 154
>gi|443923297|gb|ELU42560.1| RNA polymerase II transcription factor [Rhizoctonia solani AG-1 IA]
Length = 877
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 214/363 (58%), Gaps = 37/363 (10%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE +Y RSW+ +QEDE G L I + R+RL G S + I++ +IR+L
Sbjct: 111 SWEANYV--RSWDQVQEDEGGNLAHSVEDLIAR-KRRQRLLGPS-----SAIRRAIIRHL 162
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
++IDLS A A+ D RP+R + AFV E+ +QNPL QIG+V ++ G+ + ++
Sbjct: 163 VLLIDLSAAMADRDLRPTRFELALDCARAFVVEWCEQNPLGQIGVVGMRAGIGERIVEMT 222
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
G+P ++A+ K L +G+ S+QNA+++ + + E++I++ +L+TCDPGD
Sbjct: 223 GNPHDVLRAIADKRKLEPAGEPSLQNAIEVARAGMRHV-RLTREEIVIIFGSLTTCDPGD 281
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I ET+ C + KIR S++ L+AEM ICK LC++T G++ VAL+E H K+L+ EH PPP
Sbjct: 282 IYETLDSCVKDKIRISLVALAAEMKICKELCEKTEGSFGVALNEGHFKDLLFEHIPPPAH 341
Query: 267 IAEFA------------------IASLIKMGFPQRAGEGSI-SICSCHKEVKIGVGYTCP 307
A A L+ MGFP R S ++C CH G+ CP
Sbjct: 342 RAARTGNDKIPSSQTGKANPLNPNADLMLMGFPTRLPPTSAPALCVCHPSRMRAEGFLCP 401
Query: 308 RCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDL--HNISRSTC 365
RC A++CE+PT+C +CGL +VSSPHLARSYHHLFP+ + + +N++ + +TC
Sbjct: 402 RCSAKLCEVPTDCDVCGLMVVSSPHLARSYHHLFPVGAY-----TAINEIGPDDTPSATC 456
Query: 366 FGC 368
GC
Sbjct: 457 QGC 459
>gi|448110898|ref|XP_004201714.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
gi|359464703|emb|CCE88408.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
Length = 514
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 251/481 (52%), Gaps = 87/481 (18%)
Query: 6 RSRLNGEAEEEDDEEENLNG--GLEAWERSYADDRSWEALQEDESGF--LRPIDNSAIYH 61
R R +G + NL G G +WE Y R+W+ +++D+ G L+ + + I
Sbjct: 46 RGRSSGRQTRGGPMQSNLKGNSGGYSWEDEYQ--RTWDIVKDDDDGVGSLQTLVQTLI-- 101
Query: 62 AQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVRE 121
+ R++ + + + Q+G+IR + ++ID S E D RP+R ++ ++ F+ E
Sbjct: 102 -ESRKK---KIMKNPSTPFQRGIIRTMIVIIDGSEVMLERDLRPTRFSMMLSLLQEFILE 157
Query: 122 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSIQNAL 174
FFDQNP+SQ+G+V +++G+A ++D+ GSP+ HI + + GD S+QN+L
Sbjct: 158 FFDQNPISQMGIVMMRNGIAVRISDVSGSPQYHIDKIRQLKTKQHNRFEPKGDPSLQNSL 217
Query: 175 DLVHGLL-----NQI-PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 228
+L LL N++ + +E+LI++ AL T DPG+I +TI + I+ +IGL+A
Sbjct: 218 ELARSLLMYNFNNKVNDTQNSKEILIIFGALFTSDPGNIHKTIDNLVKDDIKVKIIGLAA 277
Query: 229 EMFICKHLCQETGGT----------YSVALDESHSKELILEHAPPPPAIAEFAI-----A 273
++ IC+ + + T + Y V ++ESH KEL+++ P P +F
Sbjct: 278 QVAICEEIVRRTNSSKTSSSYINTNYGVIMNESHFKELLMDCVIPLPVSEDFEKKEKKGV 337
Query: 274 SLIKMGFPQR-----AGEGSI-----SICSCHKE--------------------VKIGVG 303
LIKMGFP + SI SICSCH + K +G
Sbjct: 338 PLIKMGFPSKIQPSITSNSSINLNLPSICSCHPDEENESSHSKEAGEAGNGTYSSKKVIG 397
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C +VC+LPT C ICGL L+ S HLARSYHHL P+ + E P+ +
Sbjct: 398 YKCPQCLNKVCQLPTICPICGLMLILSTHLARSYHHLVPLEAYREV-PT----MEEYESI 452
Query: 364 TCFGC--------QQSLLASGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCE 411
C+GC + + NK + C KC++ FC++CD++IHE+LHNCPGCE
Sbjct: 453 YCYGCLLKFPPGRKNAESDETNKIESLTSSRYRCGKCQQDFCIDCDVFIHETLHNCPGCE 512
Query: 412 S 412
+
Sbjct: 513 N 513
>gi|326433104|gb|EGD78674.1| hypothetical protein PTSG_01653 [Salpingoeca sp. ATCC 50818]
Length = 394
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 226/380 (59%), Gaps = 27/380 (7%)
Query: 40 WEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAA 99
W+ ++E E G L + +A H + R+R +L ++G+IR++Y+V+DLS+
Sbjct: 13 WDEVREGEDGTLCIDEITAQTHTRVRKR---HALAPQLGPCKRGMIRHVYLVVDLSQDMD 69
Query: 100 EMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE---SHIK 156
+ D +P+R+ + FV FF +NP+S +G++ +++GVA + +L G+ + H+
Sbjct: 70 DDDLKPNRLTCTVHNLIDFVHSFFHENPISDMGVIVMREGVARVICELNGNKDVLVEHLS 129
Query: 157 ALM---GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQK 213
AL+ L +G++S+QNAL + L IPS+ REV+I+ + L++CDPG+I++TI+
Sbjct: 130 ALLHPKTPLFPAGEASLQNALAVARRSLRSIPSHATREVVIVQATLASCDPGNILDTIKS 189
Query: 214 CKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIA 273
+ K+ +V+GL+A + IC+ +C+ETGG ++VALDE H EL+L PP A A+
Sbjct: 190 LRSDKVTVNVVGLAAAVRICETVCKETGGIHAVALDEDHLGELLLALTTPPAAPADADAT 249
Query: 274 SLIKMGFPQRAGEGSISICSCHKEVKIGV---GYTCPRCKARVCELPTECRICGLQLVSS 330
+ ++GF A EG K+ ++G+ GY CP+C+A+V ++P C CGL LVSS
Sbjct: 250 QM-RLGFA--AYEGRRPTVRRQKDGQLGITTGGYVCPQCRAKVSDIPQRCTTCGLMLVSS 306
Query: 331 PHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKK 390
PHLA+++HH+FP+ F E T + + C GC Q L + CP C
Sbjct: 307 PHLAKTFHHMFPLPVFKEVTLA--------AAEWCAGCTQPLPTTLPA----YECPSCGA 354
Query: 391 HFCLECDIYIHESLHNCPGC 410
CL+CD+Y+H LHNCPGC
Sbjct: 355 RVCLDCDVYVHRELHNCPGC 374
>gi|432876344|ref|XP_004073002.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 2-like [Oryzias latipes]
Length = 340
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/387 (37%), Positives = 211/387 (54%), Gaps = 70/387 (18%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ ++ RR + + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQSKRRR------VVESHGQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVT--VKDGVANCLT-- 145
+V+D SR+ + D +P+R+ K +E FV E+FDQNP+SQ+G + + D L
Sbjct: 63 VVVDCSRSMEDQDLKPNRLAATLKLLEGFVDEYFDQNPISQVGKXSSYLIDDHRRALNTG 122
Query: 146 DLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
+ G+P+ HI AL + C G+ S+ NAL+L L +P + REVLI+ S+L+TCD
Sbjct: 123 EASGNPKKHITALKKAVDSACVGEPSLYNALNLAVQTLKHMPGHTSREVLIILSSLTTCD 182
Query: 204 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPP 263
P +I + IQ K K+R SVIGLSAE+ +C L +ETGG+Y V LDESH KEL++ H P
Sbjct: 183 PANIYDLIQTLKGLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKP 242
Query: 264 PPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRIC 323
PPA + + SLI+MG
Sbjct: 243 PPA-SSSSECSLIRMG-------------------------------------------- 257
Query: 324 GLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCV 383
L LVS+PHLARS+HHLFP+ PF E++ L C GCQ L +
Sbjct: 258 -LTLVSAPHLARSFHHLFPMVPFLESSVEELQ-----GSRFCEGCQGEL-----RDKSAY 306
Query: 384 ACPKCKKHFCLECDIYIHESLHNCPGC 410
CP C+ FC+ECD++IH+SLH CP C
Sbjct: 307 VCPSCRGVFCVECDLFIHDSLHCCPCC 333
>gi|258571509|ref|XP_002544558.1| suppressor of stem-loop protein 1 [Uncinocarpus reesii 1704]
gi|237904828|gb|EEP79229.1| suppressor of stem-loop protein 1 [Uncinocarpus reesii 1704]
Length = 413
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 190/306 (62%), Gaps = 13/306 (4%)
Query: 70 GRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
G L T +Q+G+IR+L +V+DLS A E D RP+R ++ + + FV E+F+QNP+S
Sbjct: 53 GHELLRDTTPLQRGIIRHLILVLDLSIAMTEKDLRPTRYLLTLRFAQEFVLEYFEQNPIS 112
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSY 187
Q+G++ ++DG+A ++D+ G+P HI AL + +G S+QNAL++ G L PS+
Sbjct: 113 QLGIIGMRDGLAVKISDMSGNPTEHILALQALRAKDPNGLPSLQNALEMARGTLFHTPSH 172
Query: 188 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----T 243
G REVLIL+ AL + DPGDI +T+ KIR V+GL+AE+ IC+ +C +T
Sbjct: 173 GTREVLILFGALLSSDPGDIHQTVSSLISDKIRVGVVGLAAEVAICREICAKTNAGDDSG 232
Query: 244 YSVALDESHSKELILEHAPPPPAIAEFAIA-SLIKMGFPQRAGEGSISICSCHKEVKIGV 302
Y VAL+E H +EL++E PP ++ A SL+ MGFP R E + S+C+CH G
Sbjct: 233 YGVALNEQHFRELMMETTTPPVTYSKKQAANSLLMMGFPSRTVEPAPSMCACHSMPSRG- 291
Query: 303 GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISR 362
GY C RC ++VC LP EC CGL L+ S HLARSYHHLFP+ + E + + +
Sbjct: 292 GYLCSRCGSKVCTLPAECPACGLTLILSTHLARSYHHLFPLINWIEVPWKKAS-----TS 346
Query: 363 STCFGC 368
+ CF C
Sbjct: 347 ANCFAC 352
>gi|336468464|gb|EGO56627.1| hypothetical protein NEUTE1DRAFT_84011 [Neurospora tetrasperma FGSC
2508]
gi|350289275|gb|EGZ70500.1| TFIIH basal transcription factor complex, subunit SSL1 [Neurospora
tetrasperma FGSC 2509]
Length = 416
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 199/366 (54%), Gaps = 40/366 (10%)
Query: 10 NGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLR 69
+ + E D+E NG A RS SWE ++ L D S + A+ R +
Sbjct: 3 DSDGEYASDDELKRNGKRTADGRSKQSKASWEDVKRSWDTVLETAD-SGLSIAEIREAEK 61
Query: 70 GRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
R L T +Q+G+IR+L +V+D+S A A+ D P+R VV FVRE+F+QNP+S
Sbjct: 62 RRRLLRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPIS 121
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH 189
Q+G+V ++DG+A ++DL G+P HI+ NQ PS+
Sbjct: 122 QLGIVGMRDGIAVRISDLSGNPAEHIE-------------------------NQTPSHAT 156
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG---GTYSV 246
REVLI+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G YSV
Sbjct: 157 REVLIIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICSELCKRTNNHDGNYSV 216
Query: 247 ALDESHSKELILEHAPPPPA-IAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVG 303
A+DE H KEL PP E ASL+ MGFP R A + +S C+CH + G
Sbjct: 217 AVDEVHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSFCACHAK-PTREG 275
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
YTCPRC +VC LP +C IC L L+ S HLARSYHHLFP+ F E S+ RS
Sbjct: 276 YTCPRCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEVPWSQ------AYRS 329
Query: 364 T-CFGC 368
T C+ C
Sbjct: 330 TACYSC 335
>gi|260943474|ref|XP_002616035.1| hypothetical protein CLUG_03276 [Clavispora lusitaniae ATCC 42720]
gi|238849684|gb|EEQ39148.1| hypothetical protein CLUG_03276 [Clavispora lusitaniae ATCC 42720]
Length = 459
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 153/428 (35%), Positives = 230/428 (53%), Gaps = 57/428 (13%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE Y R+W+ +++D S RP++ R+ R+ A Q+G+IR +
Sbjct: 42 AWEDEY--QRTWDIVKDDTS---RPVELLVQQMVDARKAKLSRN---AATPFQRGIIRTV 93
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+D SRA E D RP+R ++ FV EFFDQNP++Q+ +V +++GVA+ +++L
Sbjct: 94 VVVVDASRAMLEKDLRPTRFGATVAHLQDFVAEFFDQNPIAQMAVVMMRNGVASVVSELS 153
Query: 149 GSPESHIKALMG------KLGCSGDSSIQNALDLVHGLLNQ---IPSYGHREVLILYSAL 199
GS + HI+ L L GD S+QNAL+L LL S RE+++++ AL
Sbjct: 154 GSAQLHIERLRALRARQHTLEPKGDPSLQNALELARALLTAGGGPTSRSSREIVVVFGAL 213
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKE 255
T DPGDI +TI +IR VIGL+A++ IC+ L T Y V + ++H +E
Sbjct: 214 FTSDPGDIHQTIDSLVRDEIRVRVIGLAAQVAICRELVARTNAGECAGYGVIVGDAHFRE 273
Query: 256 LILEHAPPPPAIAEFAIAS-----LIKMGFPQR--AGEGSISICSCHKE-VKIGVGYTCP 307
L++ P A+A A + +++MGFP R A G +C+CH + GY CP
Sbjct: 274 LLMACV-EPLAVARRAAETATGVPVLRMGFPSRAPAAPGMPVLCACHPQGGGADTGYWCP 332
Query: 308 RCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST--- 364
+C++RVC LP C +CGL L+ S HLAR++HHL P ++ ++ N S +
Sbjct: 333 QCRSRVCSLPCVCPVCGLMLILSTHLARTHHHLVPPPDYETKEETKETKETNDSNNDNSN 392
Query: 365 -------------------CFGCQQSLLASGNKA-GLCVACPKCKKHFCLECDIYIHESL 404
CFGC LA G+ A G AC C + FC++CD+++HE L
Sbjct: 393 SNNDSSNSNNDSSGNSSERCFGC----LAQGDGALGARYACAACGQRFCIDCDVFVHEVL 448
Query: 405 HNCPGCES 412
HNCPGCE+
Sbjct: 449 HNCPGCEA 456
>gi|225678604|gb|EEH16888.1| TFIIH basal transcription factor complex p44 subunit
[Paracoccidioides brasiliensis Pb03]
Length = 493
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 202/385 (52%), Gaps = 33/385 (8%)
Query: 6 RSRLNGEAEEEDDEEENLNG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQY 64
R +G A D G G WE S R+WE L E G +R + +
Sbjct: 34 RPSASGRAARSKDARRRKKGRGGAEWEVS----RTWETLVEGADGTIRATVEGLLEAGKR 89
Query: 65 RRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFD 124
RR LR T +Q+G+IR+L +++DLS A +E D RP+R ++ + + FVREFFD
Sbjct: 90 RRVLRD------TTPLQRGIIRHLILILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFD 143
Query: 125 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLN 182
QNP+SQ+G+V ++DG+A ++D+ G+P HI A+ G G S+QNAL++ G L
Sbjct: 144 QNPISQLGVVGMRDGLAVRISDMSGNPTEHILAIQGLRAKDPKGMPSLQNALEMARGALF 203
Query: 183 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG 242
PS+G REVLI+Y AL + DPGDI +TI KI V+GL+A++ IC+ L T
Sbjct: 204 HTPSHGTREVLIIYGALLSSDPGDIHKTITSLITDKIHVYVLGLAAQVSICQELVTRTNN 263
Query: 243 ----TYSVALDESHSKELILEHAPPPPAIAEFAI---------------ASLIKMGFPQR 283
Y+VA++E H +EL+L PP +L+ MGFP R
Sbjct: 264 GDDSGYNVAMNEQHFRELVLNVTTPPATTLASHTAAAAANGTGTNPSTDGTLLPMGFPNR 323
Query: 284 AGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPI 343
++C+CH GY CPRC +VC LP C C L L+ S HLARSYHHLFP+
Sbjct: 324 HLTPHPTLCACHSTPSRS-GYLCPRCCTKVCTLPASCPSCNLTLILSTHLARSYHHLFPL 382
Query: 344 APFDEATPSRLNDLHNISRSTCFGC 368
+ E + + R CF C
Sbjct: 383 MNWVEVSWRKAARAEAEGRVGCFAC 407
>gi|428671746|gb|EKX72661.1| conserved hypothetical protein [Babesia equi]
Length = 409
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 211/395 (53%), Gaps = 24/395 (6%)
Query: 18 DEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVAT 77
DE + AWE+ DRSWE L D+ G L+ ++ + +L L
Sbjct: 27 DERDEETYAQYAWEKDV--DRSWEQLV-DKDGVLQFVEPQSRCLTTNESQLGSTVLRDKG 83
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
++G+IR L I+ D+S EMDF+P R+ V+ FV+E F Q P++QIGL+ ++
Sbjct: 84 LIRKRGIIRNLVIIFDMSDRMHEMDFKPDRLYCAFGAVKEFVKELFHQGPITQIGLIGLR 143
Query: 138 DGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
+ V+ ++ LG +P+ I+ L L G SG +S+QN L++ +L+ +PSY REVLI+
Sbjct: 144 NKVSTMISQLGTNPDEQIELLGNALKEGPSGTASLQNGLEMALTILSTLPSYTTREVLII 203
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
+ + T DPG+I+ T+ K KE+ I + I L+ E++I K++C ETGG SVA+D +H +
Sbjct: 204 FGSNRTLDPGNILATLYKLKENHICVNAISLAPELYILKNICTETGGMCSVAMDAAHLRT 263
Query: 256 LILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCE 315
L+ + PPP + L K+ FP + S+C+CH + Y CP+C ++ C
Sbjct: 264 LLNDFTIPPPW-HNWMEPVLTKVAFPPLKKTTTASLCACHSNLT-HTAYICPQCHSKSCS 321
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
+PT CR CG+ LVS P ++R+++HL P F I S C +
Sbjct: 322 IPTRCRCCGIYLVSPPDISRAFYHLIPPKTF-------------IKDSRTGRCDTCNYET 368
Query: 376 GNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
N + CP C FC CD YIH LH CP C
Sbjct: 369 SNGS----TCPDCASFFCEYCDAYIHNELHQCPHC 399
>gi|241950787|ref|XP_002418116.1| TFIIH subunit, putative; general transcription and DNA repair
factor IIH subunit, putative; suppressor of stem-loop
protein 1, putative [Candida dubliniensis CD36]
gi|223641455|emb|CAX43416.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 501
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 231/459 (50%), Gaps = 90/459 (19%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA---TARIQKGLI 85
AWE Y RSW+ +++DE G NS + A + + R + + Q+G+I
Sbjct: 57 AWEDEY--QRSWDIVKDDEQG-----GNS--FEAMVQSIIENRKKKIMKNPSTPFQRGII 107
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R L I+ID S A +E D RPSR+ + ++ FV EFFDQNP+S++G++ +++GVAN ++
Sbjct: 108 RTLIIIIDGSSAMSEKDLRPSRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVS 167
Query: 146 DLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGHREV 192
++ GSP+ H+ + + GD S+QN+L++ LL S +E+
Sbjct: 168 EVSGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEI 227
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT--------Y 244
L+++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y
Sbjct: 228 LVIFGALFTSDPGDIHKTIDSLVKDEIKTSVIGLSAQVAICQELVNRTNKEPRNSQSKHY 287
Query: 245 SVALDESHSKELILEHAPPPPAI--------AEFAIASLIKMGFPQR------------- 283
V ++ESH KEL++E P P +E +++MGFP +
Sbjct: 288 GVIMNESHFKELLMESVTPLPLTESEKQIQESEQNGVPVLRMGFPTKVQPTLTSAIGGSD 347
Query: 284 ---------------AGEGSISICSCHKEVKIG----VGYTCPRCKARVCELPTECRICG 324
E S + +GY CP+CK +VC LPT C +CG
Sbjct: 348 YIIEFPHLNASFPTQGSEDSKDVVEIQTNKPAAASSLIGYQCPQCKCKVCNLPTICPVCG 407
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLC-- 382
L L+ S HLARSYHHL P+AP+ E S + D + CFGCQ G K G
Sbjct: 408 LMLILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLK-FPEGVKLGTLKK 461
Query: 383 ---------VACPKCKKHFCLECDIYIHESLHNCPGCES 412
C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 462 SLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 500
>gi|396458460|ref|XP_003833843.1| hypothetical protein LEMA_P066040.1 [Leptosphaeria maculans JN3]
gi|312210391|emb|CBX90478.1| hypothetical protein LEMA_P066040.1 [Leptosphaeria maculans JN3]
Length = 618
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 235/470 (50%), Gaps = 78/470 (16%)
Query: 6 RSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHA--Q 63
R++ + DE E +AWE Y+ R+ E ++P++N + + +
Sbjct: 130 RAQSTSSKRRKKDEPEKAAPRRQAWETEYS--RTVEKT-------VQPVNNGIVGQSVQE 180
Query: 64 YRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFF 123
+ + L T Q+G+IR++ +V+DLS A E D RP+R + + +VREFF
Sbjct: 181 REEERKRKRLRKDTKPFQRGIIRHVVLVLDLSEAMMEKDMRPNRFFAMINYTQDYVREFF 240
Query: 124 DQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSIQNALDL 176
+QNP+SQ+ ++ + DGV +++L G+P H+ A+ GK G S+QNAL+L
Sbjct: 241 EQNPISQMSVLGMHDGVCIRVSELSGNPAEHVAAIASLRSKEDGKEP-KGAPSLQNALEL 299
Query: 177 VHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 236
L P +G REV+I++ +L + DPGDI T++ C +IR S+IG+ A + IC +
Sbjct: 300 ARATLYHTPPHGTREVIIVFGSLLSLDPGDIHTTVKACVRDRIRVSIIGMGARLKICTEI 359
Query: 237 CQET--GGT--YSVALDESHSKELILEHAPPPPAIAEF----------AIASLIKMGFPQ 282
T G T Y+VA+D+ KEL+L PP + E + A+L++MGFP
Sbjct: 360 VTRTNAGDTSEYTVAIDQEALKELLLATT-TPPVVRETKQSGTEPPPESAAALMRMGFPS 418
Query: 283 RAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFP 342
R E +++C+CH + +G GYTC RC A+VC LP C C L L+ S HLARSYHHLFP
Sbjct: 419 RVIEDQLTMCACHGNLTLG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSYHHLFP 477
Query: 343 IAPFDEATPSRLNDLHNISRSTCFGC---------------------------------- 368
+ + + +R + + + C GC
Sbjct: 478 LRNWATVSWARARE---VGSTQCTGCLAAFSKPPPKDNNRHVVEDEDEDDDATQPRKHAA 534
Query: 369 ----QQSLLASGNKAGLC--VACPKCKKHFCLECDIYIHESLHNCPGCES 412
+L +A C C HFC++CD++ H LHNCPGC S
Sbjct: 535 STTQDDALDGEDQRASPSGRYECQACNSHFCIDCDVFAHMVLHNCPGCLS 584
>gi|302418082|ref|XP_003006872.1| suppressor of stem-loop protein [Verticillium albo-atrum VaMs.102]
gi|261354474|gb|EEY16902.1| suppressor of stem-loop protein [Verticillium albo-atrum VaMs.102]
Length = 468
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 151/412 (36%), Positives = 222/412 (53%), Gaps = 46/412 (11%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
RSWE ++E G L D A+ RRRL T +Q+G+IR+L +V+D+S A
Sbjct: 45 RSWETVEEGADGSL---DVEGRAEAEKRRRL-----LRDTTPLQRGIIRHLVLVLDMSFA 96
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
AE D P+R+ + + FV+E+F+QNP+SQ+G+V ++DGVA ++++GG+P H++A
Sbjct: 97 MAEKDLLPTRLRLTWRLAREFVKEYFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEA 156
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ ++ G S+QNAL++ G L PS+G REVL++Y AL + DPGDI +TI
Sbjct: 157 INKWAEIDPQGSPSLQNALEMCRGALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLL 216
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF- 270
+IR S++GL+A++ IC+ LC++T Y++ALDE H +EL+L PP +
Sbjct: 217 TDRIRVSIVGLAAQVAICEELCRKTNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQ 276
Query: 271 AIASLIKMGFPQR--AGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
+ ASL+ MGFP R A + + C+CH + GY C RC RVC LP EC CGL
Sbjct: 277 STASLLMMGFPSRTLAPADTTAYCACHN-TPVREGYLCTRCGTRVCRLPAECPACGLTPH 335
Query: 329 S----------------------SPHLARSYHHLFPIAPFDEATPSRLNDLHNIS---RS 363
P A S +APF + R N + R
Sbjct: 336 PLHPPRPLLPPPLSRCATGSRSPGPRAAASRACYSCLAPFPDPPAQRRGHRANGTDGRRR 395
Query: 364 TCFGCQQSLLASGNKA---GLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
G ++ A K AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 396 GDAGDEEPAPAPKQKGVSESSRYACQVCGNHFCIDCDVFAHEVIHNCPGCQS 447
>gi|238881955|gb|EEQ45593.1| suppressor of stem-loop protein 1 [Candida albicans WO-1]
Length = 472
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 236/463 (50%), Gaps = 93/463 (20%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA---TARIQKGLI 85
AWE Y RSW+ +++DE G NS + A + + R + + Q+G+I
Sbjct: 23 AWEDEY--QRSWDIVKDDEQG-----GNS--FEAMVQSIIENRKKKIMKNPSTPFQRGII 73
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R L I+ID S A +E D RP+R+ + ++ FV EFFDQNP+S++G++ +++GVAN ++
Sbjct: 74 RTLIIIIDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVS 133
Query: 146 DLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGHREV 192
++ GSP+ H+ + + GD S+QN+L++ LL S +E+
Sbjct: 134 EVSGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEI 193
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT--------Y 244
L+++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y
Sbjct: 194 LVIFGALFTSDPGDIHKTIDNLVKDEIKASVIGLSAQVAICQELVNRTNNEPRNSQSKHY 253
Query: 245 SVALDESHSKELILEHAPPPPAI--------AEFAIASLIKMGFPQRA------------ 284
V ++ESH KEL++E P P +E +++MGFP +
Sbjct: 254 GVIMNESHFKELLMESVTPLPLTESEKQMQESEQNGVPVLRMGFPTKVQPTLTSAIGGSD 313
Query: 285 -------------GEGS------ISICSCHKEVKIG------VGYTCPRCKARVCELPTE 319
+GS + I + + +GY CP+CK +VC LPT
Sbjct: 314 YIVEFPHLNASFPTQGSEDSKDVVEIQTNKPAAAVATTSSSVIGYQCPQCKCKVCNLPTI 373
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL---LASG 376
C +CGL L+ S HLARSYHHL P+AP+ E S + D + CFGCQ + G
Sbjct: 374 CPVCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLKFPEGVKLG 428
Query: 377 NKAGLCVA-------CPKCKKHFCLECDIYIHESLHNCPGCES 412
G + C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 429 THKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 471
>gi|85080851|ref|XP_956615.1| suppressor of stem-loop protein 1 [Neurospora crassa OR74A]
gi|28881240|emb|CAD70478.1| related to transcription factor TFIIH chain p47 [Neurospora crassa]
gi|28917686|gb|EAA27379.1| suppressor of stem-loop protein 1 [Neurospora crassa OR74A]
Length = 416
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 197/365 (53%), Gaps = 38/365 (10%)
Query: 10 NGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLR 69
+ + E D+E +G A RS SWE ++ L D S + A+ R +
Sbjct: 3 DSDGEYASDDELKRHGKRTADGRSKQTKASWEDVKRSWDTVLETAD-SGLSIAEIREAEK 61
Query: 70 GRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
R L T +Q+G+IR+L +V+D+S A A+ D P+R VV FVRE+F+QNP+S
Sbjct: 62 RRRLLRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPIS 121
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH 189
Q+G+V ++DG+A ++DL G+P HI+ NQ PS+
Sbjct: 122 QLGIVGMRDGIAVRISDLSGNPAEHIE-------------------------NQTPSHAT 156
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG---GTYSV 246
RE+LI+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G YSV
Sbjct: 157 REILIIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICSELCKRTNNHDGNYSV 216
Query: 247 ALDESHSKELILEHAPPPPA-IAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGVG 303
A+DE H KEL PP E ASL+ MGFP R A + +S C+CH + G
Sbjct: 217 AVDEVHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSFCACHAK-PTREG 275
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
YTCPRC +VC LP +C IC L L+ S HLARSYHHLFP+ F E S+ +
Sbjct: 276 YTCPRCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEVPWSQA-----YKST 330
Query: 364 TCFGC 368
C+ C
Sbjct: 331 ACYSC 335
>gi|451846168|gb|EMD59479.1| hypothetical protein COCSADRAFT_41319 [Cochliobolus sativus ND90Pr]
Length = 496
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/407 (32%), Positives = 209/407 (51%), Gaps = 68/407 (16%)
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T Q+G+IR++ +V+DLS A E D RP+R + + + ++REFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINYTQDYIREFFEQNPISQMSVLGM 152
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLGCS------GDSSIQNALDLVHGLLNQIPSYGHR 190
DGV +++L G+P H+ A+ G G S+QNAL+L L P++G R
Sbjct: 153 HDGVCIRVSELSGNPAEHVAAIQGLRSKDDGKEPKGSPSLQNALELARATLYHTPNHGTR 212
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSV 246
EV++++ +L + DPGDI ++++ C +IR S+IG+ A + IC + + T Y++
Sbjct: 213 EVIVVFGSLLSLDPGDIHQSVKACVRDRIRVSIIGMGARLKICTEIVKRTNAGDESEYTI 272
Query: 247 ALDESHSKELILEHAPPP----PAIAEF-----------AIASLIKMGFPQRAGEGSISI 291
A D+ +EL+ PP P + + + A+L+ MGFP R E +++
Sbjct: 273 ATDQEMLRELLQATTTPPVIRQPLLTDKTAPVTTTQSSESAAALMMMGFPSRVVEDQLTM 332
Query: 292 CSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATP 351
C+CH + +G GYTC RC A+VC LP C C L L+ S HLARSYHHLFP+ + +
Sbjct: 333 CACHGNLTMG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVSW 391
Query: 352 SRLNDLHNISRSTCFGC----------------------------------QQSLLASGN 377
SR ++ + C GC +Q SG
Sbjct: 392 SRAREMGS---KQCVGCLAAFSNPPSNAKENGEAKRDSEAKVAKKDDDDSEEQKASESGR 448
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANEG 424
C C+ HFC++CD++ H LHNCPGC N + G
Sbjct: 449 -----YECRACESHFCIDCDMFAHMVLHNCPGCLGRLDPNAAATSNG 490
>gi|68466623|ref|XP_722507.1| hypothetical protein CaO19.1457 [Candida albicans SC5314]
gi|68466906|ref|XP_722368.1| hypothetical protein CaO19.9032 [Candida albicans SC5314]
gi|46444338|gb|EAL03613.1| hypothetical protein CaO19.9032 [Candida albicans SC5314]
gi|46444486|gb|EAL03760.1| hypothetical protein CaO19.1457 [Candida albicans SC5314]
Length = 507
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 236/463 (50%), Gaps = 93/463 (20%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA---TARIQKGLI 85
AWE Y RSW+ +++DE G NS + A + + R + + Q+G+I
Sbjct: 58 AWEDEY--QRSWDIVKDDEQG-----GNS--FEAMVQSIIENRKKKIMKNPSTPFQRGII 108
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R L I+ID S A +E D RP+R+ + ++ FV EFFDQNP+S++G++ +++GVAN ++
Sbjct: 109 RTLIIIIDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVS 168
Query: 146 DLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------NQIPSYGHREV 192
++ GSP+ H+ + + GD S+QN+L++ LL S +E+
Sbjct: 169 EVSGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEI 228
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT--------Y 244
L+++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y
Sbjct: 229 LVIFGALFTSDPGDIHKTIDSLVKDEIKASVIGLSAQVAICQELVNRTNNEPRNSQSKHY 288
Query: 245 SVALDESHSKELILEHAPPPPAI--------AEFAIASLIKMGFPQRA------------ 284
V ++ESH KEL++E P P +E +++MGFP +
Sbjct: 289 GVIMNESHFKELLMESVTPLPLTESEKQIQESEQNGVPVLRMGFPTKVQPTLTSAIGGSD 348
Query: 285 -------------GEGS------ISICSCHKEVKIG------VGYTCPRCKARVCELPTE 319
+GS + I + + +GY CP+CK +VC LPT
Sbjct: 349 YIVEFPHLNASFPTQGSEDSKDVVEIQTNKPAAAVATTSSSVIGYQCPQCKCKVCNLPTI 408
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL---LASG 376
C +CGL L+ S HLARSYHHL P+AP+ E S + D + CFGCQ + G
Sbjct: 409 CPVCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLKFPEGVKLG 463
Query: 377 NKAGLCVA-------CPKCKKHFCLECDIYIHESLHNCPGCES 412
G + C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 464 THKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 506
>gi|295657028|ref|XP_002789089.1| suppressor of stem-loop protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284987|gb|EEH40553.1| suppressor of stem-loop protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 513
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 200/380 (52%), Gaps = 34/380 (8%)
Query: 12 EAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGR 71
+A +D G WE S R+WE L E G +R + + +R LR
Sbjct: 41 DARSKDARRRKKGRGGAEWEVS----RTWETLVEGADGTIRATVEGLLEAGKRKRVLRD- 95
Query: 72 SLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQI 131
T +Q+G+IR+L +++DLS A +E D RP+R ++ + + FVREFFDQNP+SQ+
Sbjct: 96 -----TTPLQRGIIRHLILILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFDQNPISQL 150
Query: 132 GLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGH 189
G++ ++DG+A ++D+ G+P HI A+ G G S+QNAL++ G L PS+G
Sbjct: 151 GVLGMRDGLAVRISDMSGNPTEHILAIQGLRAKDPKGMPSLQNALEMARGALFHTPSHGT 210
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYS 245
REVLI+Y AL + DPGDI +TI KI V+GL+A++ IC+ L T Y+
Sbjct: 211 REVLIIYGALLSSDPGDIHKTITSLITDKIHVYVLGLAAQVSICQELVTRTNNGDDSGYN 270
Query: 246 VALDESHSKELILEHAPPPPAIAEFAI-----------------ASLIKMGFPQRAGEGS 288
VA++E H +EL+L PP +L+ MGFP R
Sbjct: 271 VAMNEQHFRELVLNVTTPPATTLASHTTTTTGAANGTSTNTSTDGTLLPMGFPNRHLTPH 330
Query: 289 ISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE 348
++C+CH GY CPRC +VC LP C C L L+ S HLARSYHHLFP+ + E
Sbjct: 331 PTLCACHSTPSRS-GYLCPRCCTKVCTLPASCPSCKLTLILSTHLARSYHHLFPLMNWVE 389
Query: 349 ATPSRLNDLHNISRSTCFGC 368
+ + R CF C
Sbjct: 390 VSWRKAARAEAEGRVGCFAC 409
>gi|340378764|ref|XP_003387897.1| PREDICTED: general transcription factor IIH subunit 2-like
[Amphimedon queenslandica]
Length = 354
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 211/404 (52%), Gaps = 54/404 (13%)
Query: 12 EAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGR 71
E + D EE+ GG WE Y +R WEA+QED G + D+ +Y + R+
Sbjct: 2 EGDTVDVEED---GGGYTWEGEY--ERPWEAIQEDIEGHILAPDDDFMYKTKRRKLFNHE 56
Query: 72 SLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQI 131
S ++ G++R++ IV+D +++ + D +P+R ++ F+ EFFD NP+SQ
Sbjct: 57 S------GVKLGIMRHILIVVDSTQSMNDKDLKPNRFTCTKTVLKKFLDEFFDFNPISQR 110
Query: 132 GLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+ ++ H +AL + CSG+ S+QNA++L +L IP++ RE
Sbjct: 111 DRRRYHTNTIINICNVS----VHKRALDTDVECSGECSLQNAMELSLRMLRHIPTHASRE 166
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
V+I++ +L++CDPG+I TI + IRCSVIGL+A + +C +C+ T G Y V LDE
Sbjct: 167 VIIIHGSLTSCDPGNIFSTINDFNQQNIRCSVIGLAASVKLCHTICERTSGVYQVILDEV 226
Query: 252 HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKA 311
H ++ +L+H PP A A LIKM GEG + G C++
Sbjct: 227 HFRDCLLQHCRPPGVKASTETA-LIKM------GEGVSLNIKLWPHYQFVCGKEQAWCQS 279
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQS 371
+ CELP EC CG+ LV +P LARSYHHLFP+ F E+T
Sbjct: 280 KYCELPVECVTCGITLVLAPQLARSYHHLFPLKMFIEST--------------------- 318
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE-SLR 414
CP C+ FC++CD+Y HE+LHNCPGCE SLR
Sbjct: 319 ----------VYVCPSCRHSFCIDCDLYCHETLHNCPGCENSLR 352
>gi|324520938|gb|ADY47747.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 340
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 193/340 (56%), Gaps = 17/340 (5%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
EDDE++ WE +YA+ + E L+EDESG + I+ A+ +RRL R
Sbjct: 7 EDDEQKGY-----TWEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP-- 59
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
ARI+ G++RY+YI+ID S A E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 ---ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGII 116
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
+D A L L G+ + +AL + + C G+ S+QN L + L P + RE+
Sbjct: 117 ICRDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREI 176
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+ + ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD H
Sbjct: 177 IAIVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDH 236
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKI---GVGYTCPRC 309
ELIL PP + +++MGFP + C CH+ G G+ CP+C
Sbjct: 237 F-ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQC 295
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEA 349
AR C LP ECR+C L L+S+P LARS+HHL P+ F E
Sbjct: 296 GARYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEV 335
>gi|324520669|gb|ADY47691.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 345
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 193/340 (56%), Gaps = 17/340 (5%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
EDDE++ WE +YA+ + E L+EDESG + I+ A+ +RRL R
Sbjct: 7 EDDEQKGYT-----WEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP-- 59
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
ARI+ G++RY+YI+ID S A E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 ---ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGII 116
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
+D A L L G+ + +AL + + C G+ S+QN L + L P + RE+
Sbjct: 117 ICRDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREI 176
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+ + ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD H
Sbjct: 177 IAIVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDH 236
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKI---GVGYTCPRC 309
ELIL PP + +++MGFP + C CH+ G G+ CP+C
Sbjct: 237 F-ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQC 295
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEA 349
AR C LP ECR+C L L+S+P LARS+HHL P+ F E
Sbjct: 296 GARYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEV 335
>gi|430811329|emb|CCJ31252.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 319
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 188/315 (59%), Gaps = 10/315 (3%)
Query: 102 DFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--M 159
D PSR VV Q +FV E+F+QNPL+Q+G++ ++DG A ++ GG+P H+ L +
Sbjct: 5 DLIPSRYVVSIDQASSFVSEYFEQNPLAQLGIIGMRDGRAISISPYGGNPHEHLMTLSRL 64
Query: 160 GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 219
++ SGD+S+QNAL++ +L +P +G REVL+++ +L++ DPGDI ETI E KI
Sbjct: 65 KQMDPSGDASLQNALEMARTILYPVPKHGTREVLLIFGSLTSFDPGDIYETINVLIEEKI 124
Query: 220 RCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEFA-IAS 274
R VIGLSA M +C+ +C+ET +Y + L+E H +L+++ PP + +
Sbjct: 125 RVYVIGLSASMSVCQQICKETNAGDESSYGIVLNEQHFHDLLMQFVIPPALKKSHKFLET 184
Query: 275 LIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLA 334
LI MGFP + E ++C+CH +V I GY CPRC ++VC LP C C L L+ S HLA
Sbjct: 185 LIMMGFPSKLIENDETLCACHSDV-IKEGYLCPRCFSKVCSLPINCPCCDLTLILSTHLA 243
Query: 335 RSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLC--VACPKCKKHF 392
RSYHHLFP+ + E H + F + + + + + AC +C KHF
Sbjct: 244 RSYHHLFPLKNWIEVPWEEAYSTHCYACLIPFPEKHEVTSITHSVSISSRYACSECHKHF 303
Query: 393 CLECDIYIHESLHNC 407
C++CD++ HE L C
Sbjct: 304 CIDCDVFAHEILFEC 318
>gi|164662116|ref|XP_001732180.1| hypothetical protein MGL_0773 [Malassezia globosa CBS 7966]
gi|159106082|gb|EDP44966.1| hypothetical protein MGL_0773 [Malassezia globosa CBS 7966]
Length = 349
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 192/355 (54%), Gaps = 51/355 (14%)
Query: 99 AEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL 158
++ D RP+R + + FV ++FDQNP+ Q+ ++ +DG+A L+ +GG+ H L
Sbjct: 2 SDRDLRPTRFDLTLQLARQFVADYFDQNPIGQLAILCARDGLAERLSLMGGNTFDHGAVL 61
Query: 159 MG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 216
KL G+ SIQNAL++ L +PS RE+L + ++L++ DPG+I TI K +
Sbjct: 62 SSRRKLEPRGEPSIQNALEMALSSLTHLPSSNTREILFISASLTSVDPGNIYHTIDKLVD 121
Query: 217 SKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIA--- 273
I+ SVI L+AEM + K C TGG ++V ++E H KEL+++H PP I E + +
Sbjct: 122 EHIQLSVISLAAEMHVLKDACARTGGDFNVVMNEDHYKELLMQHV-PPRVITEASSSSHL 180
Query: 274 ------SLIKMGFPQRAG-EGSISICSCHKEVKIG-------------VGYTCPRCKARV 313
L+ MGFP+R S C+CH + G GYTCPRC ++V
Sbjct: 181 AHSNECDLLVMGFPRRIPFHTPASFCACHGRLVTGSRSLSYADRGAAPAGYTCPRCASKV 240
Query: 314 CELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC----- 368
C++PT+C CG+ ++ S HLARSYHHLFP+ ++ P + S S CF C
Sbjct: 241 CQVPTDCPTCGITIIMSTHLARSYHHLFPVQNYE---PVAWEAVSTTSPSNCFACAFPFP 297
Query: 369 -------------QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
S LA ++ CPKC +HFCLECD ++ E LH CPGC
Sbjct: 298 PRPSNLDETSHVVMDSTLAPSSR----YMCPKCHQHFCLECDAFVQEQLHTCPGC 348
>gi|405122345|gb|AFR97112.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. grubii H99]
Length = 425
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 211/371 (56%), Gaps = 53/371 (14%)
Query: 26 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLI 85
G +AWE Y +SW+ +QEDESG L SA+ R R R R+L T +++ +I
Sbjct: 52 GRQAWEGEY--QKSWDIVQEDESGSL----ESAVETLLARGR-RKRALMSDTP-VRRSII 103
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R+++I+IDLS + + D+RP+R V+ + +V E+FDQNPL QIG++ ++
Sbjct: 104 RHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEWFDQNPLGQIGVIAMR-------- 155
Query: 146 DLGGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
SPE ++AL K L SG+ S+QN L + G + +PS E+L+++SA+ST D
Sbjct: 156 ----SPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHLPSTSSLEILVIFSAISTAD 211
Query: 204 PG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEH 260
P I + IR S++ LS E+ ICK + + TGG + VALD+ H K+L+ E
Sbjct: 212 PDGPVTIHNVLDTLATGHIRTSILSLSGEIKICKQIAERTGGKFGVALDQEHLKDLLWET 271
Query: 261 APPP-----PAIAEF--AIAS----------------LIKMGFPQRAGEGSISICSCHKE 297
PPP P A A+A+ L+ MGFP R G ++C+CH
Sbjct: 272 IPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGDLMVMGFPIRLPLGGETMCACHGL 331
Query: 298 VKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDL 357
++ G GY CPRC +++C++PT+C +CGL +VSSPHLARS+ LFP+A + P + D+
Sbjct: 332 LRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFWFLFPVANYG---PLAIEDV 387
Query: 358 HNISRSTCFGC 368
S TCFGC
Sbjct: 388 VE-SSETCFGC 397
>gi|116199505|ref|XP_001225564.1| hypothetical protein CHGG_07908 [Chaetomium globosum CBS 148.51]
gi|88179187|gb|EAQ86655.1| hypothetical protein CHGG_07908 [Chaetomium globosum CBS 148.51]
Length = 463
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 207/431 (48%), Gaps = 109/431 (25%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE RSWE + E E G I A+ A+ RRRL T Q+G+IR++
Sbjct: 56 AWEDI---KRSWEHVVETEDG---SITVGALLEAEKRRRL-----MRDTTPFQRGIIRHV 104
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+D+S A AE D P+R ++ FVRE+F+QNP+SQ+G+V ++DG+A ++D+G
Sbjct: 105 MLVLDMSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQNPISQLGIVGMRDGIAVRISDMG 164
Query: 149 GSPESHIKAL---MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
G+P HI+ L + G+ S+QNAL++ G L PS+G RE+LI+Y AL + DPG
Sbjct: 165 GNPAEHIEKLRVWAEQQEPQGNPSLQNALEMCRGALFHTPSHGTREILIIYGALLSSDPG 224
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHA 261
DI +TI +IR S++GL+A++ IC+ LC T G Y+VAL E H +EL L
Sbjct: 225 DIHDTITNLLADRIRVSIVGLAAQVAICEQLCSRTNGGDPSNYAVALHEQHFRELFLAAT 284
Query: 262 PPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECR 321
PP VC LP EC
Sbjct: 285 TPP------------------------------------------------VCRLPAECP 296
Query: 322 ICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA---SGN- 377
+C L LV S HLARSYHHLFP+ + + D S CF C + A SG
Sbjct: 297 VCALTLVLSTHLARSYHHLFPLRGWAAVS---WADARARGSSACFACLAAFPAVPPSGQI 353
Query: 378 ------------------------------KAGLCV------ACPKCKKHFCLECDIYIH 401
KA V AC C HFC++CD++ H
Sbjct: 354 QTQTQVQANGNGNGNGRDTDRDKGRDAAEVKAAAGVSESGRYACTVCNNHFCIDCDVFAH 413
Query: 402 ESLHNCPGCES 412
E +HNCPGC+S
Sbjct: 414 EVIHNCPGCQS 424
>gi|401395984|ref|XP_003879726.1| putative general transcription factor IIH polypeptide 2 [Neospora
caninum Liverpool]
gi|325114133|emb|CBZ49691.1| putative general transcription factor IIH polypeptide 2 [Neospora
caninum Liverpool]
Length = 487
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 215/434 (49%), Gaps = 57/434 (13%)
Query: 10 NGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGF--LRPIDNSAIYHAQYRRR 67
NG+A E+D G AWE +RSW+ L E GF L A + RR
Sbjct: 29 NGDAAAEEDLY-----GQYAWE--CEAERSWDQLVESSEGFVLLHGASGGADEGVKTRRA 81
Query: 68 LRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNP 127
R + L +I+KG+IR L ++ID+S A E DFRP R+ V + E F+ F QNP
Sbjct: 82 DRRQQLE---PQIKKGVIRSLVLLIDMSEAMREKDFRPDRLSCVCQLAEEFIGTFLLQNP 138
Query: 128 LSQIGLVTVKDGVAN------CLTDLGGSPESHIKALMGKLGC----------------- 164
L+Q+ V + A+ C G SP G +G
Sbjct: 139 LAQLAQVALIGPSADPIVTSRCGATRGDSPSVPAARSPGSVGTHLFSSNAEECIASLREK 198
Query: 165 --------SGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 216
+G S++N L L LL +P Y REVLILY +L TCD G I ETI KE
Sbjct: 199 RKTTPGVGTGVPSLKNGLRLAKDLLACVPPYCTREVLILYGSLRTCDVGCIEETIADVKE 258
Query: 217 SKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLI 276
I C+VI L+AEM + K LCQETGG ++V L H + L+++H PPA + SL+
Sbjct: 259 GNICCNVICLAAEMHVLKKLCQETGGRHAVPLHREHLRSLLVQHT-LPPAWSSSMQPSLV 317
Query: 277 KMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARS 336
+MGFP + ++CSCH+++ Y CP+C A++C++P CR C L LVS ++RS
Sbjct: 318 RMGFPSLKSTSTAALCSCHQQLTFS-AYVCPQCGAKLCDIPNRCRCCFLHLVSPADISRS 376
Query: 337 YHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLEC 396
+H L P PFD + D+ R C C L G++ CP C + FC +C
Sbjct: 377 FHSLCPPLPFDP-----VADIPEAKR-VCACCTTRLERGGSQ------CPDCGEIFCHDC 424
Query: 397 DIYIHESLHNCPGC 410
D+Y HE L C C
Sbjct: 425 DVYTHEQLRQCAFC 438
>gi|399216155|emb|CCF72843.1| unnamed protein product [Babesia microti strain RI]
Length = 408
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 218/416 (52%), Gaps = 27/416 (6%)
Query: 17 DDEEENLNGGLE------AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRG 70
++ E+ LN E AWE+ +R+WE L E++ G L+ S R +
Sbjct: 8 EEYEDTLNDFQEDALAQYAWEQDL--ERTWEKLIEND-GELK-FSQSTKARKNIDRPIDS 63
Query: 71 RSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQ 130
+++G+IR + I+ DLS ++DF+P+R+ Q F+RE F Q P+SQ
Sbjct: 64 GVSDGNNIIVKRGIIRNILILFDLSDRMRDIDFKPNRLHTAVAQTSKFIRELFYQCPISQ 123
Query: 131 IGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYG 188
+G+V +K+ +A ++ G + + I L L G GD S+QNAL++ LL+ +P Y
Sbjct: 124 VGIVAMKNKLAKLISPFGSNTDEQISRLNDLLSDGPEGDISLQNALEMSISLLDDVPQYT 183
Query: 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL 248
RE+LI++ ++ TCDPG+I TI++ K+ I I LS+E++I KH+C ET G++SVA+
Sbjct: 184 TREILIVFGSIKTCDPGNIFATIKRLKKHHITVDAISLSSELYILKHICTETNGSHSVAI 243
Query: 249 DESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPR 308
D +H + PP + + L+K+GFP + S+C CH ++ + YTCP+
Sbjct: 244 D-THDLTSLFNIYTNPPRWQDGMLPILVKVGFPSLTKSNTASLCVCHGKL-VFTSYTCPQ 301
Query: 309 CKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC 368
C A C +P+ C+ C + LVS + R +HHL F L TC C
Sbjct: 302 CSAITCNIPSRCKCCQIYLVSPADVCRGFHHLCAPPEFTNVPADILGGC-----DTCASC 356
Query: 369 ----QQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNPVV 420
+ S++ SG CP C K FC CD +IH +LH CP C ++ PVV
Sbjct: 357 SVELKNSVMYSGEDRA--KQCPGCMKIFCRICDEFIHGTLHQCPFC--IKLIKPVV 408
>gi|449019861|dbj|BAM83263.1| similar to TFIIH subunit SSL1 [Cyanidioschyzon merolae strain 10D]
Length = 549
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 225/449 (50%), Gaps = 70/449 (15%)
Query: 29 AWERSYADDRSWEALQEDESG---FLR-PIDNSAIYHAQYRRRLRGRSLTVATARIQK-- 82
AWER Y +RSWEA+ ++G F R +D H R L+ + + A R+ +
Sbjct: 93 AWERRY--ERSWEAIGVSDAGGGIFRRDALDQQRQRHRDLERVLQDSAASAARRRVGRAL 150
Query: 83 GLIRYLYIVIDLSRAAAE----------MDFRPSRMVVVAKQVEAFVREFFDQNPLSQIG 132
GLIR+L + +DLS A D +PSR + + FV++FF +N +SQ+
Sbjct: 151 GLIRFLVLALDLSAAVRSRSRSSLSSSSQDLKPSRWSAILSGAQYFVQDFFSENAVSQLA 210
Query: 133 LVTVKDGVANCLTDLGGSPESHIKAL------MGKL---GCSGDSSIQNALDLVHGLLNQ 183
+V ++DG+A ++++ GS HI AL K G G +S+QN L+L +
Sbjct: 211 IVILQDGIAAQVSEMSGSVRLHIDALRSLQRGTNKFLHDGDGGQTSLQNCLELGLRIHAS 270
Query: 184 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT 243
+P +G RE+LI+Y LSTCDPGDI +TIQ C ++ IR SVIGL AE++I + + T GT
Sbjct: 271 VPRFGTREMLIVYGGLSTCDPGDIHKTIQNCVDASIRVSVIGLGAEVYILRATAERTQGT 330
Query: 244 YSVALDESHSKELILEHAPP--------------PPAIAEFAIASLIKMGFPQRAGEGSI 289
Y V +D H +L+ + PP P+ A + ++ MGFP + +
Sbjct: 331 YRVPMDNDHFHQLLRQQVPPPPPPPQASRSTKHLEPSEAPWTAMQMV-MGFPPKLARDRV 389
Query: 290 SICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE- 348
+ + +G+ CPRC+ + E+P C +CGL L S HLARSYHH+FP F+E
Sbjct: 390 -VVAIDTRKACRLGFECPRCRQWLSEVPGNCILCGLTLTSVLHLARSYHHIFPAPRFEER 448
Query: 349 -----------------------ATPSRLNDLHNIS-RSTCFGCQQSLLASGNKAGLCVA 384
+ P R+ D + C GC ++L + C
Sbjct: 449 EEPSSSRASALMSDEEGFSVSPSSVPERMPDAAAPPVKWQCSGCSRTLSTKDDLQLQCTG 508
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCESL 413
C++ FC++CD +HE LH CP C ++
Sbjct: 509 I--CRQLFCIDCDQLVHERLHTCPACLAM 535
>gi|402076515|gb|EJT71938.1| hypothetical protein GGTG_11190 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 540
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 197/362 (54%), Gaps = 45/362 (12%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
RSW+ +E G L I + RR LR T IQ+G+IR+L +V+D+S A
Sbjct: 65 RSWDVAEELAEGGLSL--EGRIEAEKRRRVLRD------TTPIQRGIIRHLVLVLDMSLA 116
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
E D PSR V F REFFDQNP+SQ+ +V ++DGVA ++D G+P HI+
Sbjct: 117 MDEKDMLPSRHRVAIAYAVDFAREFFDQNPISQLAIVGMRDGVAVRISDTSGNPADHIEK 176
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
L + +L G+ S+QNAL++ G L PS+G REV++++ ALS+ DPGDI ETI
Sbjct: 177 LRQLVELPPMGNPSLQNALEMCRGALFNTPSHGTREVVMIFGALSSSDPGDIHETIDGLV 236
Query: 216 ESKIRCSVIGLSAEMFICKHLCQET------------GGT-----YSVALDESHSKELIL 258
+IR S+IGLSA++FIC+ LC+ T GG Y VA+D+ H +EL+L
Sbjct: 237 TDRIRVSIIGLSAQVFICEDLCRRTNAGHSASEPVLVGGEDESSGYMVAMDDVHFRELLL 296
Query: 259 EHAPPPPA------------IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTC 306
PP A ASL+ MGFP R ++C+CH G+ C
Sbjct: 297 SVTRPPATRQSQLQQQGAAAGGGEAGASLLMMGFPSRTTGTDPALCACHNR-PTRDGFLC 355
Query: 307 PRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCF 366
RC +RVC LP EC CGL L+ S HLARSYHHLFP+ + E +D H CF
Sbjct: 356 TRCGSRVCRLPAECPACGLTLILSTHLARSYHHLFPLRIWVEVP---WSDAHR--SVACF 410
Query: 367 GC 368
C
Sbjct: 411 AC 412
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCE 411
C C+KHFC++CD++ HE +HNCPGC+
Sbjct: 490 CQVCRKHFCIDCDVFAHEVVHNCPGCQ 516
>gi|330925787|ref|XP_003301194.1| hypothetical protein PTT_12637 [Pyrenophora teres f. teres 0-1]
gi|311324299|gb|EFQ90721.1| hypothetical protein PTT_12637 [Pyrenophora teres f. teres 0-1]
Length = 462
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 181/314 (57%), Gaps = 26/314 (8%)
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T Q+G+IR++ +V+DLS A E D RP+R + + + +VREFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINFTQEYVREFFEQNPISQMSVLGM 152
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLG------CSGDSSIQNALDLVHGLLNQIPSYGHR 190
DGV +++L G+P H+ A+ G G S+QNAL+L L PS+G R
Sbjct: 153 HDGVCIRVSELSGNPAEHVAAIQGLRSKDDGKEPKGAPSLQNALELARATLYHTPSHGTR 212
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSV 246
EV++++ +L + DPGDI +T++ C +IR SVIG+SA + IC + T Y++
Sbjct: 213 EVIVVFGSLLSLDPGDIHQTVKACVRDRIRVSVIGMSARLKICTEIVTRTNAGDESEYTI 272
Query: 247 ALDESHSKELILEHAPPP------PAIAEFAI------ASLIKMGFPQRAGEGSISICSC 294
A D+ KEL+L PP PA A+ A+L+ MGFP R E +++C+C
Sbjct: 273 ATDQEMLKELLLATTTPPVIRQSAPAATTPAVPPPESAAALMMMGFPSRVVEDQLTMCAC 332
Query: 295 HKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRL 354
H + +G GYTC RC +VC LP C C L L+ S HLARSYHHLFP+ + + SR
Sbjct: 333 HGNLTMG-GYTCSRCSTKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVSWSRA 391
Query: 355 NDLHNISRSTCFGC 368
+ + C GC
Sbjct: 392 REKGS---KECVGC 402
>gi|170585402|ref|XP_001897473.1| TFIIH basal transcription factor complex p44 subunit [Brugia
malayi]
gi|158595152|gb|EDP33725.1| TFIIH basal transcription factor complex p44 subunit, putative
[Brugia malayi]
Length = 361
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 199/339 (58%), Gaps = 17/339 (5%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+DDE E WE YAD + + L+EDESG + I A+ ++RL R
Sbjct: 3 DDDEPEGYT-----WEVDYADGLNIRDVLREDESGSIEKSVAKLILDAKRKKRLNNR--- 54
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
A+++ G++RY+Y+VID S + A+ +PSR+ V K + F+ +F +QNP+SQ+G+V
Sbjct: 55 --PAKVRLGIMRYVYLVIDCSFSMADKSIQPSRLAVTIKALNQFLDKFSEQNPISQVGVV 112
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
+D A L L G+ ++L + +L C G+ S+ N+L L+ P + REV
Sbjct: 113 VCRDKRAERLIPLTGNVRLVKESLSTITELLCHGEFSLHNSLMATIRSLHSYPGHASREV 172
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+++ ++LSTCDP I T + K IRCSV+ LSAE+F+ K LC T G + V LD SH
Sbjct: 173 ILIVASLSTCDPSSIFGTFELLKRYHIRCSVVSLSAEIFVFKKLCSITSGRHDVILDSSH 232
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHK-EVKI--GVGYTCPRC 309
+ ++ EHA PP + A +S+++MGFP S C CH+ EV+ G G+ CP+C
Sbjct: 233 FEVILSEHA-IPPVCSRNAESSVVRMGFPAHESIDCPSFCLCHQSEVRPSGGRGFFCPQC 291
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE 348
AR C LP ECRIC L L+S+P LARS ++L P+ F+E
Sbjct: 292 GARYCSLPVECRICKLTLISAPQLARSLYNLLPLPAFEE 330
>gi|189195190|ref|XP_001933933.1| TFIIH basal transcription factor complex p44 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187979812|gb|EDU46438.1| TFIIH basal transcription factor complex p44 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 460
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 180/318 (56%), Gaps = 26/318 (8%)
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T Q+G+IR++ +V+DLS A E D RP+R + + + +VREFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINFTQEYVREFFEQNPISQMSVLGM 152
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLG------CSGDSSIQNALDLVHGLLNQIPSYGHR 190
DGV +++L G+P H+ A+ G G S+QNAL+L L PS+G R
Sbjct: 153 HDGVCIRVSELSGNPAEHVAAIQGIRSKDDGKEPKGAPSLQNALELARATLYHTPSHGTR 212
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSV 246
EV++++ +L + DPGDI +T++ C +IR SVIG+SA + IC + T Y++
Sbjct: 213 EVIVVFGSLLSLDPGDIHQTVKACVRDRIRVSVIGMSARLKICTEIVTRTNAGDESEYTI 272
Query: 247 ALDESHSKELILEHAPPPPAIAEFAIAS------------LIKMGFPQRAGEGSISICSC 294
A D+ KEL+L PP +A+ L+ MGFP R E +++C+C
Sbjct: 273 ATDQEMLKELLLATTTPPVIRQSAPVATTTAAPSPESAAALMMMGFPSRVVEDQLTMCAC 332
Query: 295 HKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRL 354
H + +G GYTC RC A+VC LP C C L L+ S HLARSYHHLFP+ + + SR
Sbjct: 333 HGNLTMG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVSWSRA 391
Query: 355 NDLHNISRSTCFGCQQSL 372
+ + C GC S
Sbjct: 392 REKGS---KECVGCLSSF 406
>gi|440296353|gb|ELP89180.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba invadens IP1]
Length = 358
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 184/341 (53%), Gaps = 21/341 (6%)
Query: 76 ATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVT 135
A +R ++GL R + VID+S DF P+R+ + ++ F FF NPLSQIGLV
Sbjct: 28 ADSRSRRGLQRSVLFVIDMSYPMNYEDFHPTRISFINTKMNNFFDNFFVDNPLSQIGLVA 87
Query: 136 VKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
++ A+ + L + + GK C+G S+Q +L+L L RE++ +
Sbjct: 88 TRNSTADIICPLTRNISKLKETAWGK--CNGSISVQISLELCLQFLKDTKDMTSREIVFV 145
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
SA+STCDPG+I ETI K +++ IR SVI +SAE+ + + + + TGG Y ++E H++E
Sbjct: 146 TSAISTCDPGNIFETIGKVRDNLIRVSVISISAEVHVMRQMTKVTGGDYFTIMNEKHAEE 205
Query: 256 LILEHAPPP--PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVG-YTCPRCKAR 312
+I PP A + L+ +GFP+ +IC CH KIG+G Y CP C
Sbjct: 206 VIKTFIEPPRYKATGKEPKVELLFVGFPRELERS--TICECHS--KIGLGHYECPVCGFC 261
Query: 313 VCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD-EATPSRLNDLHNISRSTCFGCQQS 371
CELP EC++C L+ S H ARS+H LFP+ PF E P CF C +
Sbjct: 262 YCELPVECKVCKANLIFSHHFARSFHFLFPVKPFVLEKEP-----------EVCFACGKK 310
Query: 372 LLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412
++ C KC K FC C+I+IH+ L NCPGCE+
Sbjct: 311 YEEKKDEEMKFWKCEKCSKSFCETCNIFIHDVLFNCPGCEN 351
>gi|349604001|gb|AEP99672.1| General transcription factor IIH subunit 2-like protein, partial
[Equus caballus]
Length = 274
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 161/255 (63%), Gaps = 11/255 (4%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIITKSKRAEKLTELSG 122
Query: 150 SPESHIKALMGKLG--CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP DI
Sbjct: 123 NPRKHITSLKKAVAMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSDI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
IQ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YGLIQTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQ 282
+ + SLI+MGFPQ
Sbjct: 243 SN-SECSLIRMGFPQ 256
>gi|299751185|ref|XP_001830111.2| RNA polymerase II transcription factor [Coprinopsis cinerea
okayama7#130]
gi|298409259|gb|EAU91776.2| RNA polymerase II transcription factor [Coprinopsis cinerea
okayama7#130]
Length = 430
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 203/360 (56%), Gaps = 57/360 (15%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE SY RSW+ +QEDE+G L+ + R R R L A I++ +IR+L
Sbjct: 58 TWEASYT--RSWDTVQEDEAGSLQ------TSVEELMARGRRRRLLAPAAPIRRTIIRHL 109
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
I++DLS++ + D RP+R + + F+ E+FDQNPL QIG+V ++ G+A+
Sbjct: 110 IIILDLSQSMMDRDMRPTRFDLTLQYTREFIAEWFDQNPLGQIGIVGMRAGLASTFVKFT 169
Query: 149 -----GSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQI---------PSYGHREV 192
G+P+ ++A+ KL +G+ S+QNA+++ +N I P++ RE+
Sbjct: 170 ECRRIGNPQEVLRAIADRHKLEPTGEPSLQNAIEMARSNMNNIANESVSSHLPTHSSREI 229
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG------GTYSV 246
LIL+ +L+TCDPG+I +T++ C ++KIR SV+ L+AEM IC+ LC +TG G + V
Sbjct: 230 LILFGSLTTCDPGNIHDTLETCIKNKIRISVVALAAEMKICRELCDKTGDYIPKEGQFGV 289
Query: 247 ALDESHSKELILEHAPPP-------PAIAEFA--------IASLIKMGFPQRAGEGS-IS 290
A++E H K+L+ E PPP PA A A L+ MGFP R E S +
Sbjct: 290 AMNEGHYKDLLFELVPPPAQKAAPRPAGPGSAPQPPSTNPAADLMMMGFPTRLPESSQPT 349
Query: 291 ICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV----------SSPHLARSYHHL 340
+C CH E+K G+ CPRC+++VC++PT+C +CGL + S P L + HL
Sbjct: 350 LCVCHSELK-SQGFLCPRCQSKVCDVPTDCDVCGLMITIIAGDNEHCSSMPRLLTPFPHL 408
>gi|406697522|gb|EKD00781.1| component of RNA polymerase transcription factor TFIIH, Ssl1p
[Trichosporon asahii var. asahii CBS 8904]
Length = 436
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 209/396 (52%), Gaps = 54/396 (13%)
Query: 11 GEAEEEDDEEENLNG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLR 69
G +++ ++ NG + AWE +Y RSW+ ++EDE+G L+ + I + +R
Sbjct: 27 GPSKKSRKGKDKANGKSVNAWEETY--KRSWDVVREDETGGLQAAVDQLIARGRRKR--- 81
Query: 70 GRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLS 129
VAT + R + +D + + + +FV E+FDQNPL
Sbjct: 82 ----AVATITSAAHVRRRRPLGLDERQGLPSHPY-----------LRSFVIEWFDQNPLG 126
Query: 130 QIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSY 187
QIG++ +++ +A L + G+P+ I+AL K L +G+ S+QN L + G ++ +PS
Sbjct: 127 QIGIILLRNRLAQTLVPMCGNPQEIIEALADKRKLEPAGEPSLQNGLVMARGGMSHLPST 186
Query: 188 GHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTY 244
EVL+L+SA+ST DP +I + + + +++R ++I LSAE+ ICK + + TGG +
Sbjct: 187 SSLEVLVLFSAISTADPDGSMNIHQVLDELVSARVRVTIISLSAEIKICKQIAERTGGRF 246
Query: 245 SVALDESHSKELILEHAPPP------PAIAEF-------------------AIASLIKMG 279
VA+DE H KEL+ E PPP P A + L+ MG
Sbjct: 247 GVAIDEDHYKELLWETIPPPAQTITAPVTANVREALARGGRQAPGAPKRPPPLGDLLVMG 306
Query: 280 FPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHH 339
FP R S C+CH +K G GY CPRC A++C++PT+C +CGL +VSSPHLARS+
Sbjct: 307 FPTRLPGAGESFCACHGLLKRG-GYMCPRCGAKLCDVPTDCEVCGLMVVSSPHLARSFWL 365
Query: 340 LFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLAS 375
LFP++ +D T R R+ CFGC S
Sbjct: 366 LFPVSKYD--TLGRGVLTKEAVRAECFGCDAPFPTS 399
>gi|71027729|ref|XP_763508.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350461|gb|EAN31225.1| hypothetical protein, conserved [Theileria parva]
Length = 447
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/453 (30%), Positives = 220/453 (48%), Gaps = 79/453 (17%)
Query: 13 AEEEDDEEENLNGGLEAWERSYAD---DRSWEALQEDES--GFLRPIDNSAIYH---AQY 64
E E + E N N EA+++ + D+SWE L E + F++P + +Y +Y
Sbjct: 15 TEYEQNTEINNNTEDEAYQQYAWELDVDKSWEQLVEKDGVLQFIKP--QTRLYQEFDLEY 72
Query: 65 RRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFD 124
+ L+ +L + R G+IR + I+ D+S EMDF+P R+ ++ F+ E +
Sbjct: 73 QNNLKQHNLNLIYKR---GIIRSIMILFDMSEQMHEMDFKPDRLYCAFNSLKEFLGELYS 129
Query: 125 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLN 182
P++Q+G+V +++ + N +T G +P ++ L L G G SS+QN L++ ++
Sbjct: 130 SGPITQVGIVVMRNKICNVITQFGTNPNEQMELLSSVLKDGPEGSSSLQNGLEMCMKIMC 189
Query: 183 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICK-------- 234
+P Y RE+L+++ + T DPG+I+ T+ + K++ I + I LS E++I K
Sbjct: 190 DLPYYSTREILVIFGSNRTLDPGNILLTLDQLKQNFITVNSISLSPELYILKVALLRYGV 249
Query: 235 -------------------------------------HLCQETGGTYSVALDESHSKELI 257
++C+ETGG YSVA D +H K L+
Sbjct: 250 RSNGTSYLLVILPQSYPPQWDSLWPLWLLVPHIYTSYNICKETGGNYSVARDVNHLK-LL 308
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+ PP + LIK+ FP S+S+C CH +V + Y CP+C + C +P
Sbjct: 309 FNNLTIPPPWKSWMEPILIKVSFPPMKRGTSVSLCCCHNKV-VNTVYICPQCHSNSCYIP 367
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN 377
T+C+ CG+ +VS P ++R++HHL P PF H C GC + SG
Sbjct: 368 TKCQGCGIFMVSPPDISRAFHHLIPPKPFH----------HVEGGMDCVGCNLR-VESGY 416
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ C C FC CD YIH+ LH CP C
Sbjct: 417 E------CQDCGGLFCQHCDKYIHQDLHQCPKC 443
>gi|221482733|gb|EEE21071.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 627
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 202/418 (48%), Gaps = 46/418 (11%)
Query: 20 EENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATAR 79
EE+L G AWE +RSW+ L E GF+ +A + RR R + +
Sbjct: 185 EEDLYGQY-AWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTRRVDRRQQ---HEPQ 238
Query: 80 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 139
I+KG+IR L ++ID+S A E DFRP R+ V + E F+ F QNPL+Q+ V +
Sbjct: 239 IKKGIIRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQNPLAQLAQVALIGP 298
Query: 140 VANCLTDLGGSPESHIKALMGKLGC---------------------------SGDSSIQN 172
A L G + G +G S+ N
Sbjct: 299 SAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKRKHPGVGTGVPSLNN 358
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
L L LL +P Y REVL+L+ +L TCD G I ETI K+S I C+VI L+AE+ +
Sbjct: 359 GLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSNICCNVICLAAELHV 418
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISIC 292
K+LCQ TGG + V L H + L+++H PP A LI+MGFP + ++C
Sbjct: 419 LKNLCQATGGRHDVPLHREHLRALLMQHTLPPAWSASMQ-PCLIRMGFPSLKSTSTAALC 477
Query: 293 SCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS 352
SCH+ + Y CP+C A++C P CR C L LVS ++RS+H L P PFD P+
Sbjct: 478 SCHQHLTFS-SYVCPQCGAKLCTTPNRCRCCFLHLVSPADISRSFHSLCPPLPFD-PVPA 535
Query: 353 RLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ ++ C C L G + CP C + FC +CDIY HE L C C
Sbjct: 536 DAPE----AKRLCACCTTQLDRGGAQ------CPDCGEIFCHDCDIYSHEQLRQCAFC 583
>gi|237841927|ref|XP_002370261.1| general transcription factor IIH polypeptide 2, putative
[Toxoplasma gondii ME49]
gi|211967925|gb|EEB03121.1| general transcription factor IIH polypeptide 2, putative
[Toxoplasma gondii ME49]
gi|221503074|gb|EEE28780.1| btf, putative [Toxoplasma gondii VEG]
Length = 627
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 202/418 (48%), Gaps = 46/418 (11%)
Query: 20 EENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATAR 79
EE+L G AWE +RSW+ L E GF+ +A + RR R + +
Sbjct: 185 EEDLYGQY-AWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTRRIDRRQQ---HEPQ 238
Query: 80 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 139
I+KG+IR L ++ID+S A E DFRP R+ V + E F+ F QNPL+Q+ V +
Sbjct: 239 IKKGIIRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQNPLAQLAQVALIGP 298
Query: 140 VANCLTDLGGSPESHIKALMGKLGC---------------------------SGDSSIQN 172
A L G + G +G S+ N
Sbjct: 299 SAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKRKHPGVGTGVPSLNN 358
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
L L LL +P Y REVL+L+ +L TCD G I ETI K+S I C+VI L+AE+ +
Sbjct: 359 GLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSNICCNVICLAAELHV 418
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISIC 292
K+LCQ TGG + V L H + L+++H PP A LI+MGFP + ++C
Sbjct: 419 LKNLCQATGGRHDVPLHREHLRALLMQHTLPPAWSASMQ-PCLIRMGFPSLKSTSTAALC 477
Query: 293 SCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS 352
SCH+ + Y CP+C A++C P CR C L LVS ++RS+H L P PFD P+
Sbjct: 478 SCHQHLTFS-SYVCPQCGAKLCTTPNRCRCCFLHLVSPADISRSFHSLCPPLPFD-PVPA 535
Query: 353 RLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ ++ C C L G + CP C + FC +CDIY HE L C C
Sbjct: 536 DAPE----AKRLCACCTTQLDRGGAQ------CPDCGEIFCHDCDIYSHEQLRQCAFC 583
>gi|170035934|ref|XP_001845821.1| btf [Culex quinquefasciatus]
gi|167878420|gb|EDS41803.1| btf [Culex quinquefasciatus]
Length = 367
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 183/309 (59%), Gaps = 28/309 (9%)
Query: 13 AEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS 72
A++ED +E WE Y +++WEA++ED+ G + I A+ +R+ +
Sbjct: 2 ADDEDPKEYR-------WETGY--EKTWEAIKEDDDGLVEGSIAEIIQKAKRKRQAMKKG 52
Query: 73 LTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIG 132
+ + G++R+LY+++D S A + D +P+R++ K +E F+ EFFDQNP+SQ+G
Sbjct: 53 FS------KLGMMRHLYVILDCSEAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLG 106
Query: 133 LVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHR 190
++ +K A +T+LGGS HIKA+ + KL +G+ S+QN L+L L +PS+ R
Sbjct: 107 VIAMKAKRAEKITELGGSCRKHIKAVGNLNKLNLTGEPSLQNGLELALKTLKMVPSHASR 166
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDE 250
E+L++ +L+TCDP DI TI K IRCSV+ LSAE+ +CK LC ETGG Y LD+
Sbjct: 167 EILVVMGSLTTCDPTDIHITIDALKSEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDD 226
Query: 251 SHSKELILEHAPPPPAIAEFAIASLIKMGFPQ-RAGEGS---ISICSCHKEVK------I 300
SH K+ +L+H PP A + S+IKMGFP + EG +++C CH +
Sbjct: 227 SHFKDQLLQHIDPPQAGNQQEF-SMIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLT 285
Query: 301 GVGYTCPRC 309
GY CP+C
Sbjct: 286 SGGYHCPQC 294
>gi|403367585|gb|EJY83616.1| P44/SSL1-like protein [Oxytricha trifallax]
Length = 499
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 185/329 (56%), Gaps = 18/329 (5%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRL-RGRSLTVATARIQ-KGLIR 86
AWE+ + W+ L+E D S Y ++ ++L + ++ I+ K LIR
Sbjct: 8 AWEKDIS--ARWKTLKE--------ADISEFYESEQSQKLHKKEAIDKFNQSIKRKSLIR 57
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
YL +VID S AA + + RP+R +V+ + FV ++FDQNPLS + V A L+D
Sbjct: 58 YLTVVIDFSSAAKKQEMRPNRAIVIKSYLSNFVIDYFDQNPLSCLSFVATFRERAIILSD 117
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
SP+ HI+ + G++SIQN+L+L +PSY +E+LI++ +++ CDPG+
Sbjct: 118 FNDSPQDHIEKICRFSDLEGNASIQNSLELCIENFTAVPSYAKKEILIIFCSITNCDPGN 177
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I ET K K I CSVI LSA MFI + + Q TGG + ++ D++H ++L+ P +
Sbjct: 178 IFETYDKLKSKMITCSVISLSASMFILQKVTQLTGGEFFLSKDQAHFQDLLKRLLVPKES 237
Query: 267 IAEFA-----IASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECR 321
I + +LIKMGFP R ++CSCH +++ V Y CP C++ CEL + C+
Sbjct: 238 IEDLTQRKQQQNTLIKMGFPMRKILSYPAVCSCHNDLRFLV-YICPNCQSPSCELSSFCK 296
Query: 322 ICGLQLVSSPHLARSYHHLFPIAPFDEAT 350
+C + LVS+ HL+R+ H +A F T
Sbjct: 297 VCQIMLVSAAHLSRTAQHNQNLANFQRLT 325
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 365 CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
C GC + + AS + + V C CKK +CL+CDI+IHE+L +CP C+ ++
Sbjct: 451 CNGCSKRVEASFDNVDI-VICTICKKFYCLDCDIFIHETLLSCPTCQLIQ 499
>gi|167376758|ref|XP_001734134.1| TFIIH basal transcription factor complex p44 subunit [Entamoeba
dispar SAW760]
gi|165904499|gb|EDR29715.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba dispar SAW760]
Length = 362
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 18/342 (5%)
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
R ++GL R + +ID+S + + D++P+R+ + +++ F EF+ NPLS+IGL+ ++
Sbjct: 31 RSRRGLQRKVIFIIDMSLSMIQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRN 90
Query: 139 GVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSA 198
A S I+ M C G S+Q +LDL +L+ + RE++I+ S+
Sbjct: 91 KTAE--QQFPLSRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSNTSNSSSREIIIVTSS 148
Query: 199 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL 258
++TCDPG+I +TI+ K++ IRCSVI + EM I K L + TGG Y ++E H++ ++
Sbjct: 149 ITTCDPGNIYDTIETLKKTTIRCSVISFAPEMHITKLLTKITGGDYHTIMNEKHAENVLN 208
Query: 259 EHAPPPPAIAEFAIASLIKM--GFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCEL 316
PP I++ GFP++ +IC CH ++ I + CP C CEL
Sbjct: 209 TFIIPPIYKENTYEPKTIQLYIGFPKQLNIP--TICECHSKIDIN-HFECPICNFCYCEL 265
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P +C+IC L+ S H ARSYH +FPI PF T + + CFGC + +
Sbjct: 266 PIQCKICNAILLLSHHFARSYHFMFPIEPFKIITMIK-------PQEKCFGCGKEIDDRI 318
Query: 377 NKAGL----CVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
K C KC K++C ECD +IH+ L+NCPGCES +
Sbjct: 319 EKKEEEPVNIYQCKKCLKYYCNECDSFIHDVLYNCPGCESKK 360
>gi|156083725|ref|XP_001609346.1| transcriptional factor 2 subunit [Babesia bovis T2Bo]
gi|154796597|gb|EDO05778.1| transcriptional factor 2 subunit [Babesia bovis]
Length = 364
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 188/338 (55%), Gaps = 12/338 (3%)
Query: 12 EAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGR 71
+ +E+ DEE AWE+ + D+SWE L D+ G L+ + + +
Sbjct: 24 DIDEQRDEEIYAQ---YAWEKDF--DKSWEQLV-DKDGVLQFVQQKDVSNTDVTSD-GTV 76
Query: 72 SLTVATARIQK-GLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQ 130
+L+ A + IQK G++R + I+ D S E+DF+P R+ A V+ ++ F Q P++Q
Sbjct: 77 ALSEADSSIQKRGVVRNIVIMFDTSDGMREVDFKPDRLHCAAGAVKGLIQGLFHQGPMTQ 136
Query: 131 IGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYG 188
+ ++T+++ + ++ LG P HI L K+ G G S+QN L++ +L +P Y
Sbjct: 137 LAIITMRNKRSTMVSKLGTPPSEHIALLDEKIKEGTDGVPSLQNGLEMAISILTDMPPYT 196
Query: 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL 248
RE+L+++ A T DPG+I+ T+QK K+ + S + ++ EM+I KH+C ETGG+Y+V
Sbjct: 197 TREILVIFGATKTFDPGNILTTLQKLKDEHVSVSAVSIAPEMYILKHICTETGGSYAVCK 256
Query: 249 DESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPR 308
D H K L+ +H PP + L K+GFP + S+C CH + Y CP+
Sbjct: 257 DSVHLKSLLNDHT-MPPKWRPWMEPVLTKVGFPPLEKANTASLCICHSTLTYK-AYICPQ 314
Query: 309 CKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPF 346
C ++ C +PT+C+ C L LVS P ++R +H L P PF
Sbjct: 315 CHSKSCAIPTKCKCCRLYLVSPPDISRMFHQLIPPKPF 352
>gi|407044792|gb|EKE42827.1| TFIIH basal transcription factor complex subunit, putative
[Entamoeba nuttalli P19]
Length = 363
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 190/341 (55%), Gaps = 20/341 (5%)
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
R ++GL R + +ID+S + + D++P+R+ + +++ F EF+ NPLS+IGL+ ++
Sbjct: 31 RSRRGLQRKVIFIIDMSLSMNQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRN 90
Query: 139 GVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSA 198
A S I+ M C G S+Q +LDL +L+ + RE++I+ S+
Sbjct: 91 KTAE--QQFPLSRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSTTSNSSSREIIIVTSS 148
Query: 199 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL 258
++TCDPG+I +TI+ K++ IRCSVI + EM I + L + TGG Y ++E H+++ +L
Sbjct: 149 ITTCDPGNIYDTIETLKKTTIRCSVISFAPEMHITRLLTKVTGGDYHTIMNEKHAED-VL 207
Query: 259 EHAPPPPAIAEFAI---ASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCE 315
PP E A + +GFP++ +IC CH ++ I + CP C CE
Sbjct: 208 HTFIIPPIYKENAYEPKTIQLYIGFPKQLNVP--TICECHSKIDIN-HFECPICGFCYCE 264
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL--- 372
LP +C+IC L+ S H ARSYH +FPI PF + + CFGC + +
Sbjct: 265 LPIQCKICNAILLLSHHFARSYHFMFPIEPFKVIAMIK-------PQEKCFGCGKEIDDR 317
Query: 373 LASGNKAGLCV-ACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ + + V C KC K++C ECD +IH+ L+NCPGCES
Sbjct: 318 MEKKEEETVNVYQCKKCLKYYCNECDSFIHDVLYNCPGCES 358
>gi|67479545|ref|XP_655154.1| TFIIH basal transcription factor complex subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56472271|gb|EAL49768.1| TFIIH basal transcription factor complex subunit, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449704914|gb|EMD45073.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba histolytica KU27]
Length = 363
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 190/341 (55%), Gaps = 20/341 (5%)
Query: 79 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
R ++GL R + +ID+S + + D++P+R+ + +++ F EF+ NPLS+IGL+ ++
Sbjct: 31 RSRRGLQRKVIFIIDMSLSMNQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRN 90
Query: 139 GVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSA 198
A S I+ M C G S+Q +LDL +L+ + RE++I+ S+
Sbjct: 91 KTAE--QQFPLSRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSTTSNSSSREIIIVTSS 148
Query: 199 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL 258
++TCDPG+I +TI+ K++ IRCSVI + EM I + L + TGG Y ++E H+++ +L
Sbjct: 149 ITTCDPGNIYDTIETLKKTTIRCSVISFAPEMHITRLLTKVTGGDYHTIMNEKHAED-VL 207
Query: 259 EHAPPPPAIAEFAI---ASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCE 315
PP E A + +GFP++ +IC CH ++ I + CP C CE
Sbjct: 208 HTFIIPPIYKENAYEPKTIQLYIGFPKQLNVP--TICECHSKIDIN-HFECPICGFCYCE 264
Query: 316 LPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL--- 372
LP +C+IC L+ S H ARSYH +FPI PF + + CFGC + +
Sbjct: 265 LPIQCKICNAILLLSHHFARSYHFMFPIEPFKVIAMIK-------PQEKCFGCGKEIDDR 317
Query: 373 LASGNKAGLCV-ACPKCKKHFCLECDIYIHESLHNCPGCES 412
+ + + V C KC K++C ECD +IH+ L+NCPGCES
Sbjct: 318 IEKKEEETVNVYQCKKCLKYYCDECDSFIHDVLYNCPGCES 358
>gi|238610326|ref|XP_002397695.1| hypothetical protein MPER_01834 [Moniliophthora perniciosa FA553]
gi|215472703|gb|EEB98625.1| hypothetical protein MPER_01834 [Moniliophthora perniciosa FA553]
Length = 251
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 164/248 (66%), Gaps = 13/248 (5%)
Query: 102 DFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL-GGSPESHIKALMG 160
D RP+R ++ + FV E+FDQNPL Q+G+V + + ++ G+P+ ++++
Sbjct: 5 DMRPTRFSLMLQYAREFVLEWFDQNPLGQMGVVVPIEVGSLIYSNFEPGNPQDVLRSISD 64
Query: 161 --KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 218
KL GD S+QNA+D+ +N +P++ RE++IL+ +L+T DPG+I ET+ +C ++K
Sbjct: 65 RHKLEPMGDPSLQNAIDMARNSMNHLPTHSSREIVILFGSLTTVDPGNIHETLDECVKNK 124
Query: 219 IRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP--------AIAEF 270
IR S++ L+AEM IC+ LC +TGG + VAL+E H K+L+ E PPP A +
Sbjct: 125 IRISLVALAAEMRICRDLCIKTGGEFGVALNEGHFKDLLFELIPPPAQRAISKAGAGSTN 184
Query: 271 AIASLIKMGFPQRAGEGS-ISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVS 329
A A+L+ MGFP R + S S+C CH ++K G+ CPRC A+VC++PT+C ICGL +VS
Sbjct: 185 ASANLMMMGFPTRLPDASPPSLCVCHSDLK-SDGFLCPRCLAKVCDVPTDCDICGLMIVS 243
Query: 330 SPHLARSY 337
SPHLARSY
Sbjct: 244 SPHLARSY 251
>gi|300123288|emb|CBK24561.2| unnamed protein product [Blastocystis hominis]
Length = 626
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 172/320 (53%), Gaps = 26/320 (8%)
Query: 102 DFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 161
D +PSR+ VV Q++ F+R+FF N LS + ++ D A LT L + H+ AL K
Sbjct: 5 DLKPSRLEVVVSQLKQFIRDFFYHNSLSSLCIIVSHDRRAFQLTPLSRHMKEHLNAL-DK 63
Query: 162 LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 221
L CSG S+Q +LD+ + PS +E++ L S++STCDP DI +TI +E I+C
Sbjct: 64 LTCSGKFSLQLSLDIAIKTMELAPSQFAKEIICLISSISTCDPRDIYKTISIIQEKHIQC 123
Query: 222 SVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP----PAI-------AEF 270
SV+ LS E+++ + L Q T G ++V D +H PP P + A
Sbjct: 124 SVMSLSGEVYLFQKLAQITSGIFAVPEDPQQVHHFFSQHISPPINSDPIVLVKREDGATV 183
Query: 271 AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSS 330
+ +MGFP IC+CH Y CPRC++ VCELP C +C L LV
Sbjct: 184 THREICEMGFPNNVQLS--HICACHVRF-CSKFYECPRCRSYVCELPVRCPVCMLMLVDY 240
Query: 331 PHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKK 390
HL +SYHHLFP F+E + TC+GC S++ G +C+ CPKC K
Sbjct: 241 THLTQSYHHLFPPKNFEECNDHK-------PGITCYGC-CSVIKEGE---ICLQCPKCMK 289
Query: 391 HFCLECDIYIHESLHNCPGC 410
+FC CD ++H+++ +CPGC
Sbjct: 290 YFCQTCDAFVHDNIFHCPGC 309
>gi|68068799|ref|XP_676310.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495950|emb|CAH97731.1| conserved hypothetical protein [Plasmodium berghei]
Length = 401
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 214/418 (51%), Gaps = 30/418 (7%)
Query: 1 MKNSERSRLNGEAEEEDDEEENLNGGLE------AWERSYADDRSWEALQEDESGFLRPI 54
M+NS+ + N EE + + N E WE+ +RSW L E+ +G L+ +
Sbjct: 1 MQNSQNTDNNAIFVEEVVRDFDQNEVFEEITTKFIWEQDV--ERSWNLLVEN-NGILQHV 57
Query: 55 DNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQ 114
N Y + +++ + T ++KG+ R + I+ D+S E DF+P+R+ V+ +
Sbjct: 58 -NQETYDEKNKQKYKKSQ----TCSLRKGIFRNVIILFDMSSCMKERDFKPNRITVILEC 112
Query: 115 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQN 172
VE F++ FF +NP+ +G+V +K+ A + L + + + +L+ K G G S+Q
Sbjct: 113 VEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTSNIDDVLNSLVKEQKEGLQGSPSLQE 172
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
L++ H LL +P YG +E+LI+Y ++ TCD +I++ + ++ + + I ++ EM I
Sbjct: 173 GLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNILKYLDLLIKNNMYVNCISIAPEMHI 232
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISIC 292
KH+C++T G Y + +++ I + A P + LI + FP + + +C
Sbjct: 233 LKHICEKTNGIYKICTNKNILINEINQVAETPLWMHGME-PQLIHICFPVKKKINTQIVC 291
Query: 293 SCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS 352
SCH + Y C C + C++P++C+ICG+ L+S L+ + L F E
Sbjct: 292 SCHNILNTDT-YICNFCNSYTCKIPSKCKICGIHLISMHDLSHITNSLQASPLFVEIRNE 350
Query: 353 RLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ N H C C Q L ++ C KCK FCLECD++IHE L+ CP C
Sbjct: 351 QNNHTH------CASCNQLLYDKVSQ------CTKCKNIFCLECDVFIHEDLNQCPFC 396
>gi|294911611|ref|XP_002778020.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239886141|gb|EER09815.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 421
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 209/409 (51%), Gaps = 43/409 (10%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAI---YHAQYRRRL------RGRSLTVATAR 79
AWE Y +SW + +D+ G L D ++I Y Y L G + +
Sbjct: 28 AWEADYT--KSWINITKDQHGKLVVRDEASIARKYPRNYDGVLPVSAGEDGELVHKQSMA 85
Query: 80 IQKGLIRYLYIVIDLSRAAAEMDFRPSRM-VVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+++GL+R+LY+V+D+S A MD++ +R+ VV+ F+ ++FD NP+S + ++ ++D
Sbjct: 86 LKRGLLRFLYLVVDMSSAMQNMDYKQNRLDFVVSHLCRNFIPQYFDLNPISNLSVLALRD 145
Query: 139 GVANCLTDLGGSPESHIKALM--GKLGCSGDSSIQNALDLV-HGLLNQIPSYGHREVLIL 195
A+ +T + G P S ++ ++ G SG +S+ NAL+ V +P YG REVLI+
Sbjct: 146 QRAHFVTRMSGQPASQMERVLQFSTGGASGSASLVNALEAVGQAAKGSLPRYGTREVLIV 205
Query: 196 YSALSTCDPGDIMETIQKC--------KESKIRCSVIGLSAEMFICKHLCQETGGTYSVA 247
+ +L + DP + I C K + +R SVI LS E++ + + + TGGT+SVA
Sbjct: 206 WGSLHSADPPTSGKLIPDCVDRLIEEIKPNSVRVSVISLSPELYALRKVVEMTGGTFSVA 265
Query: 248 LDESHSKELILEHAPPPPAIAEFAIASLIKMGFP-QRAGEGSISI-----CSCHKEVKIG 301
H K L+ +H PP ++ S IKMGFP +RA +G+ + C CH ++
Sbjct: 266 TSPIHFKRLMQKHLTPPNWVSS---PSYIKMGFPVRRACDGNHTADPPIKCMCHNRLQKT 322
Query: 302 VGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNIS 361
Y CP+C + VCE+P C +C L LV L + + H++ + + + L +
Sbjct: 323 FVYICPQCHSPVCEIPVNCPVCRLPLVDDDALKKHHRHIYSMPTY-----TLLPTVDYPK 377
Query: 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
TC C G + C +C C ECD++ H L +CPGC
Sbjct: 378 SYTCQFCGTDFTEGGAR------CDQCLSDVCYECDMFAHNKLRHCPGC 420
>gi|313240907|emb|CBY33192.1| unnamed protein product [Oikopleura dioica]
Length = 384
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 196/398 (49%), Gaps = 44/398 (11%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WEAL+ED++G L I + +RL + A + ++R+
Sbjct: 13 WEGGY--ERTWEALREDDTGAL-------ISGSSAAKRLFAKKRLAQEAGQRIHIVRHCV 63
Query: 90 IVIDLSRAAAEMDFR----PSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
+ +DLSR+ A+ D R P+R + ++ FV +FF PL Q+ LV +++ AN +
Sbjct: 64 LALDLSRSMADPDLRIDRYPNRAGCAVRSLKEFVPKFFASCPLGQLALVILQNKRANIVV 123
Query: 146 DLGGSPESHIKAL----MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
LGGS +KAL + G S+ N + +LN + + +RE++ + +L+T
Sbjct: 124 PLGGSEARLLKALNDIEVKGFKTGGQCSMVNGIAASKSMLNAVGEHSNREIIFVVGSLNT 183
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHA 261
D TI+ IRCSV+ LSAE+ I K L + T G Y V LD + LE
Sbjct: 184 IDVTSPFATIETVANEGIRCSVVSLSAEVNIWKKLAERTDGKYFVPLDPIDVSDK-LEEL 242
Query: 262 PPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECR 321
PP + L+KMGFPQ+ + Y CP+C+ RV +PT C
Sbjct: 243 SRPPVESSSRQGVLVKMGFPQKEADAR---------------YICPQCRTRVKAIPTLCD 287
Query: 322 ICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLN---DLHNISRST------CFGCQQSL 372
+C L LVS+ HLAR YHHLFP + + P + DL + RS C GC +
Sbjct: 288 VCKLSLVSAAHLARCYHHLFPPSSVTPSIPEQSGEEIDLE-LERSQFEKIRPCVGCNYAP 346
Query: 373 LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ S + V C KC C ECD +I E LH+CPGC
Sbjct: 347 I-SVEEGRQFVVCDKCLNSLCGECDGFIDEHLHSCPGC 383
>gi|312076202|ref|XP_003140756.1| general transcription factor IIH subunit 2 [Loa loa]
Length = 1131
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 151/252 (59%), Gaps = 19/252 (7%)
Query: 164 CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSV 223
C G+ S+ N+L L+ P Y REV+++ ++LSTCDP +I T + K IRCSV
Sbjct: 95 CHGEFSLHNSLMAAIKSLHSYPGYASREVILIVASLSTCDPSNIFGTFELLKRYHIRCSV 154
Query: 224 IGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQR 283
I LSAE+FI + LC T G ++V LD +H + ++ EHA PP + + A +S+++MGFP
Sbjct: 155 ISLSAEVFIFRKLCSATSGCHNVILDSTHFEVILNEHANPPIS-SRNAESSVVRMGFPAH 213
Query: 284 AGEGSISICSCHK-EVKI--GVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHL 340
S S C CH+ E++ G G+ CP+C AR C LP ECRIC L L+S+P LARS H+L
Sbjct: 214 ESIDSPSFCLCHQSEIRPSGGRGFFCPQCGARYCSLPVECRICKLTLISAPQLARSLHNL 273
Query: 341 FPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYI 400
P+ F+E + + CF C + L +K+ C CK FC++CD+ +
Sbjct: 274 LPLPAFEEI---------DTTERVCFACIRQL---DDKS---FVCKNCKSTFCIDCDVLL 318
Query: 401 HESLHNCPGCES 412
HESL CPGC+S
Sbjct: 319 HESLQICPGCKS 330
>gi|118377110|ref|XP_001021737.1| transcription factor ssl1 family protein [Tetrahymena thermophila]
gi|89303503|gb|EAS01491.1| transcription factor ssl1 family protein [Tetrahymena thermophila
SB210]
Length = 372
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 179/341 (52%), Gaps = 14/341 (4%)
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T+ +K L+R++YI++D ++++ +DF+PSR+ + ++ F++ FFD NPLS + +
Sbjct: 39 TSTTKKSLLRFVYIIVDTTQSSTRVDFKPSRIGLTQIYLKNFIKNFFDSNPLSVLSIGKT 98
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLGC--SGDSSIQNALDLVHGLLNQIPSYGHREVLI 194
++G L + S S + + KL D S+ L+ + + P Y REV++
Sbjct: 99 QNGQCITLQEFTSSI-SLLDKTIEKLVVDEKEDFSLFECLNETFNIFAEAPPYAFREVVL 157
Query: 195 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSK 254
+ S ST D GDI E I K K+ KI ++I L+A+ FI + L +ET G Y AL E +
Sbjct: 158 IQSTPSTKDKGDINEQINKAKQCKITFNIISLNAKTFIFQKLTKETQGKYDTALHEKDYE 217
Query: 255 ELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
L+ + PP I +LI++GFP + +C+CH E+K Y CP+CK++ C
Sbjct: 218 NLLNSYCEPPQQILNKTEKTLIQVGFPNKKYSKISVLCACHMELKTNF-YICPQCKSKNC 276
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST-----CFGCQ 369
E+P++C C L L+ H+ +SYH + F+ + N+ + C GC
Sbjct: 277 EVPSKCSGCQLNLILPLHITKSYHFSQNLKEFELLGQEKSNNSMETEQDKTQNILCNGCS 336
Query: 370 QSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ + K C CK FCLECDI IH+ NCP C
Sbjct: 337 EDI-----KEDYFSKCQNCKSIFCLECDILIHKQKLNCPKC 372
>gi|323454955|gb|EGB10824.1| hypothetical protein AURANDRAFT_58771 [Aureococcus anophagefferens]
Length = 361
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 190/392 (48%), Gaps = 40/392 (10%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86
++ WER A + +W AL+ED G R +D +R + + +GLIR
Sbjct: 1 MQRWER--AGEGAWAALEEDAEG--RLVDGGPGSRDGGGKRR---RVGGGAGGLARGLIR 53
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
Y+ +V+D S AA D RPSR+ F+ + F NP S +V +DG A +
Sbjct: 54 YVALVVDGSAAAGSGDLRPSRLAACCAAGAEFLADLFAGNPFSSACVVDARDGAAKLASP 113
Query: 147 LGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204
L G+ +H AL +G+ +G S+Q AL+ L P YG REV++L S+L+T D
Sbjct: 114 LSGAARAHADALAAVGRAAPAGAFSLQRALEAAAAALEAAPDYGFREVVVLSSSLATRDA 173
Query: 205 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP 264
GD+ + +KIRC V+ L+AE ++ + L TGG ++VALD H L+ PP
Sbjct: 174 GDLNAVAARLAAAKIRCHVVNLAAETYVVRKLADATGGEFAVALDAGHLAALLGNRVEPP 233
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIG------VGYTCPRCKARVCELPT 318
P A+ A + AGE G + CPRC R ELP
Sbjct: 234 PLAADDA----------RLAGEPPPLPAPALASSAGGAPAWRATTHACPRCATRAAELPA 283
Query: 319 ECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNK 378
C +C L LVS+PHLARSYHHLFP+A F P R+ + CF C G
Sbjct: 284 ACAVCDLPLVSAPHLARSYHHLFPVAAF----PGRVAE-----DGACFAC------GGGL 328
Query: 379 AGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
A CP C FC +CD +H +LH CPGC
Sbjct: 329 APRAFDCPACGAAFCGDCDEAVHAALHVCPGC 360
>gi|67595351|ref|XP_665994.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656889|gb|EAL35767.1| hypothetical protein Chro.30353 [Cryptosporidium hominis]
Length = 423
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/431 (30%), Positives = 219/431 (50%), Gaps = 35/431 (8%)
Query: 8 RLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQ---- 63
+L + DE+E + +WE+ ++WE L E ESG L ID+ A + +
Sbjct: 6 KLADTSNNSLDEQE----VVYSWEQGLI--KNWERLVETESG-LVVIDDEARFDSNNADE 58
Query: 64 -YRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREF 122
Y L R+ I++GL+R + I++D++ E+D++P R+ + K E F+++
Sbjct: 59 SYNIELLKRA---PNTNIRRGLLRNIVIILDMTSNMLELDYKPDRLQCMVKCNEIFIKQL 115
Query: 123 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGL 180
+ NPL+QI ++++ DG+ + + + +++ L GC G SIQN L+ L
Sbjct: 116 LEDNPLTQISVISIYDGIGEVIISYNSNFLEIMTSILNYLKKGCKGSMSIQNGLEKAKYL 175
Query: 181 LNQIPSYGHREVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQE 239
L IP YG +E++ ++ + D + E ++ + I + I E++I K + +
Sbjct: 176 LVSIPPYGTKEIIFFLGSMRSVDNSFLFNEWVEGFSSNNIIINAILFIPELYIIKTITKM 235
Query: 240 TGGTYSVALDESHSKELILEH--APPPPAIAEFAI-ASLIKMGFPQRAGEGSISI-CSCH 295
TGG A++ H +L LE+ PPP IA + +L+ MGFP+ + CSCH
Sbjct: 236 TGGVCLCAMNNDHLLKLTLENFIKPPPNNIASTPLNINLVTMGFPEYLNNQTHPFGCSCH 295
Query: 296 KEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLF---PIAPFDEATPS 352
+ GY+CP+CK+ VC LPT+C +C + L+S HLA+S+ +LF I P S
Sbjct: 296 GSLT-HRGYSCPKCKSIVCYLPTKCPVCLIYLISPNHLAKSFAYLFQHPDIIPIKNGEYS 354
Query: 353 RLNDLHNISRSTCFGCQQSL-----LASGNKAGLC--VACPKCKKHFCLECDIYIHESLH 405
++ + ++ C C+ L SG+++ + C C FC EC +I +LH
Sbjct: 355 KIES--SSIKTKCELCESQFSNNVYLNSGSRSNIINKYLCTNCNTQFCNECCKFIFTTLH 412
Query: 406 NCPGCESLRQS 416
CP C SLR S
Sbjct: 413 QCPICCSLRIS 423
>gi|66359374|ref|XP_626865.1| transcription factor TFIIH with a vWA domain [Cryptosporidium
parvum Iowa II]
gi|46228124|gb|EAK89023.1| transcription factor TFIIH with a vWA domain [Cryptosporidium
parvum Iowa II]
Length = 423
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 218/431 (50%), Gaps = 35/431 (8%)
Query: 8 RLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQ---- 63
+L + DE+E + +WE+ ++WE L E ESG L ID+ + +
Sbjct: 6 KLADTSNNSLDEQE----VVYSWEQGLI--KNWERLVETESG-LVVIDDETRFDSNNADE 58
Query: 64 -YRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREF 122
Y L R I++GL+R + I++D++ E+D++P R+ + K E F+++
Sbjct: 59 SYNIELLKRG---PNTNIRRGLLRNIVIILDMTSNMLELDYKPDRLQCMVKCNEIFIKQL 115
Query: 123 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGL 180
+ NPL+QI ++++ DG+ + + + +++ L GC G SIQN L+ L
Sbjct: 116 LEDNPLTQISVISIYDGIGEVIISYNSNFLEIMTSILNYLKKGCKGSMSIQNGLEKAKYL 175
Query: 181 LNQIPSYGHREVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQE 239
L IP YG +E++ ++ + D + E ++ + I + I E++I K + +
Sbjct: 176 LVSIPPYGTKEIIFFLGSMRSVDNSFLFNEWVEGFSSNNIIINAILFIPELYIIKTITKM 235
Query: 240 TGGTYSVALDESHSKELILEH--APPPPAIAEFAI-ASLIKMGFPQRAGEGSISI-CSCH 295
TGG A++ H +L LE+ PPP IA + +L+ MGFP+ + CSCH
Sbjct: 236 TGGVCLCAMNNDHLLKLTLENFIKPPPNNIASTPLNINLVTMGFPEYVSNQTHPFGCSCH 295
Query: 296 KEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLF---PIAPFDEATPS 352
+ + GY+CP+CK+ VC LPT+C +C + L+S HLA+S+ +LF I P S
Sbjct: 296 RSLT-HRGYSCPKCKSIVCYLPTKCPVCLIYLISPNHLAKSFAYLFQHPDITPIKNGEYS 354
Query: 353 RLNDLHNISRSTCFGCQQSL-----LASGNKAGLC--VACPKCKKHFCLECDIYIHESLH 405
++ + ++ C C+ L SG+++ + C C FC EC +I +LH
Sbjct: 355 KIES--SSIKTKCELCESQFSNNVYLNSGSRSNIINKYLCTNCSTQFCNECCKFIFNTLH 412
Query: 406 NCPGCESLRQS 416
CP C SLR S
Sbjct: 413 QCPICCSLRIS 423
>gi|82753444|ref|XP_727680.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483641|gb|EAA19245.1| W43325 comes from this gene., putative [Plasmodium yoelii yoelii]
Length = 401
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 200/383 (52%), Gaps = 24/383 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE+ +RSW L E+ +G L+ ++ Y + + + T ++KG+ R +
Sbjct: 36 WEQDV--ERSWNLLVEN-NGILQHVNQET-----YEEKNKQKYKKNQTCSLRKGIFRNVI 87
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
I+ D+S + E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L
Sbjct: 88 ILFDMSSSMKERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTS 147
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+ + + +L+ K G +G S+Q L++ H LL +P YG +E+LI+Y ++ TCD +I
Sbjct: 148 NIDDVLNSLVKEQKEGLNGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNI 207
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
++ + ++ + + I ++ EM I KH+C++T G Y + ++ I + A P +
Sbjct: 208 LKYLDLLIKNNMYVNCISIAPEMHILKHICEKTNGIYKICTSKNILINEINQVAETPLWM 267
Query: 268 AEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQL 327
LI + FP + + +CSCH + Y C C + C++P++C+ICG+ L
Sbjct: 268 HGME-PQLIHICFPVKKKINTQIVCSCHNILNTDT-YICNFCNSYTCKIPSKCKICGIHL 325
Query: 328 VSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPK 387
+S L+ ++L F E + H C C Q L ++ C K
Sbjct: 326 ISMHDLSHITNNLQASPLFVEIKNEQNYYTH------CSSCNQQLYDKVSQ------CTK 373
Query: 388 CKKHFCLECDIYIHESLHNCPGC 410
CK FCLECD++IHE L+ CP C
Sbjct: 374 CKNIFCLECDVFIHEDLNQCPFC 396
>gi|389586086|dbj|GAB68815.1| transcription factor [Plasmodium cynomolgi strain B]
Length = 401
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/387 (29%), Positives = 199/387 (51%), Gaps = 30/387 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE+ +RSW L E+ +G L+ + + ++ + + ++KG+ R++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGILQHVSQENLEEKCKQKYKKNQ-----VCALRKGIFRHI 86
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
I+ D+S + E DF+P R+ VV + VE+F+ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMKERDFKPDRINVVLESVESFLTNFFFKNPVGHVGVVALKNSSAKLIQPLT 146
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+ + +KAL+ + +G G S+Q L++ H LL IP YG +E+LI+Y ++ TCD +
Sbjct: 147 SNMDDIMKALLKERSMGLQGSPSLQQGLEIAHDLLIDIPLYGTKEILIIYGSIRTCDKKN 206
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL---EHAPP 263
I+ + ++ + + + ++ EM I KH+C+ET G Y + + +K +L +
Sbjct: 207 ILNILNLIVKNNMHVNCVSIAPEMHILKHICEETNGAYKICM----TKNALLNEMNNVTE 262
Query: 264 PPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRIC 323
P LI + FP + + +CSCH ++ Y C C + C++P++C++C
Sbjct: 263 TPLWMSGMEPQLIHICFPVKKKISTQIMCSCHNQLNTDT-YICNFCNSYTCKIPSKCKVC 321
Query: 324 GLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCV 383
G+ L+S L+ ++L F E + S C C + L ++
Sbjct: 322 GMHLISMHDLSHITNNLQGSPLFLEIKNEK------DGPSVCVSCNKRLYDKVSQ----- 370
Query: 384 ACPKCKKHFCLECDIYIHESLHNCPGC 410
C KCK FCL CD+YIHE L+ CP C
Sbjct: 371 -CSKCKNIFCLGCDLYIHEDLNQCPFC 396
>gi|90082659|dbj|BAE90511.1| unnamed protein product [Macaca fascicularis]
Length = 237
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 147/238 (61%), Gaps = 22/238 (9%)
Query: 184 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT 243
+P + REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGT
Sbjct: 1 MPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGT 60
Query: 244 YSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRA--------GEGSISICSCH 295
Y V LDESH KEL+ H PPPA + SLI+MGFPQ + S S+
Sbjct: 61 YHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLD 119
Query: 296 KEVKIGV---GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPS 352
+ G+ GY CP+C+A+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E
Sbjct: 120 GNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE 179
Query: 353 RLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
N C+GCQ L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 180 EYN-----GERFCYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 227
>gi|221060951|ref|XP_002262045.1| ssl1-like protein [Plasmodium knowlesi strain H]
gi|193811195|emb|CAQ41923.1| ssl1-like protein, putative [Plasmodium knowlesi strain H]
Length = 401
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 195/387 (50%), Gaps = 30/387 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE+ +RSW L E+ +G L+ + + + + + ++KG+ R++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGVLQHVS-----QENFEEKSKQKYKKNQVCALRKGIFRHI 86
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
I+ D+S + E DF+P R+ VV + VE F+ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMKERDFKPDRINVVLECVENFLTNFFFKNPVGHVGVVALKNSSAKLIQPLT 146
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+ E + AL+ + +G G S++ L++ H LL IP YG +E+LI+Y ++ TCD +
Sbjct: 147 SNMEDIMNALVKERSMGLQGSPSLEQGLEIAHDLLVDIPLYGTKEILIMYGSIRTCDKKN 206
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I+ + ++ + + + +S EM I KH+C+ET G Y + + +K ++
Sbjct: 207 ILNILNLIVKNNMHVNCVSISPEMHILKHICEETNGVYKICM----TKNALMNEMNNVTE 262
Query: 267 IAEFAIA---SLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRIC 323
+ I LI + FP + + +CSCH + Y C C + C++P++C++C
Sbjct: 263 TPLWMIGMEPQLIHICFPIKKKISTQIMCSCHNHLNTDT-YICNFCNSYTCKIPSKCKVC 321
Query: 324 GLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCV 383
G+ L+S L+ ++L F E + S C C + L ++
Sbjct: 322 GMHLISMHDLSHITNNLQGSPLFIEIKNEK------NGPSACVSCNKPLYDKVSQ----- 370
Query: 384 ACPKCKKHFCLECDIYIHESLHNCPGC 410
C KCK FCL CD+YIHE L+ CP C
Sbjct: 371 -CSKCKNIFCLGCDLYIHEDLNQCPFC 396
>gi|261190444|ref|XP_002621631.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
SLH14081]
gi|239591054|gb|EEQ73635.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
SLH14081]
Length = 502
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 179/323 (55%), Gaps = 34/323 (10%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
GG E WE S R+WE+L E G + + + +R LR T +Q+G+
Sbjct: 74 GGAE-WEVS----RTWESLVESADGTISATVEGLLEAGKRKRLLR------DTTPLQRGI 122
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR+L +V+DLS A AE D RP+R ++ + + FV EFF+QNP+SQ+G++ ++DG+A +
Sbjct: 123 IRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRI 182
Query: 145 TDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC 202
+D+ G+P HI A+ + G S+QN L++ G L + P++G REV I++ AL +
Sbjct: 183 SDMSGNPTDHILAIQSLRPKDPKGMPSLQNTLEMARGALFRTPTHGTREVFIIFGALLSS 242
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELIL 258
DPGDI +TI KIR S+IGL+A++ IC+ +C T Y VAL+E H +EL +
Sbjct: 243 DPGDIHKTINTLVADKIRVSIIGLAAQVAICRDICARTNNGDDSGYGVALNEQHFRELFM 302
Query: 259 E--------------HAPPPPAIAEFAIASLIKMGFPQR--AGEGSISICSCHKEVKIGV 302
++ +SL+ MGFP R + + ++C+CH +
Sbjct: 303 NVTTPPATTVAPTPTTTKEETKTSQTTTSSLLMMGFPSRTLSPTTTPTLCACHSKPSR-T 361
Query: 303 GYTCPRCKARVCELPTECRICGL 325
GY C RC A+VC LPT C GL
Sbjct: 362 GYLCSRCGAKVCTLPTSCPCGGL 384
>gi|156102767|ref|XP_001617076.1| transcription factor [Plasmodium vivax Sal-1]
gi|148805950|gb|EDL47349.1| transcription factor, putative [Plasmodium vivax]
Length = 401
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 200/386 (51%), Gaps = 28/386 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE+ +RSW L E+ +G L+ + + ++ + + ++KG+ R++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGILQHVSQENLEEKGKQKYKKNQ-----VCALRKGIFRHI 86
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
I+ D+S + E DF+P R+ VV + VE F+ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMKERDFKPDRINVVLECVENFLTHFFFKNPVGHVGVVALKNSSAKLIQPLT 146
Query: 149 GSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+ E AL+ + +G G S+Q L++ H LL IP YG +E+LI+Y ++ TCD +
Sbjct: 147 SNMEDITNALLKERSMGLQGSPSLQQGLEIAHDLLIDIPLYGTKEILIMYGSIRTCDKKN 206
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I+ + ++ + + + ++ EM I KH+C++T G+Y + + ++ S + + P
Sbjct: 207 ILNILNLIVKNNMHVNCVSIAPEMHILKHICEQTNGSYKICMTKN-SLMNEMNNITETPL 265
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQ 326
LI + FP + + +CSCH + Y C C + C++P++C++CG+
Sbjct: 266 WMMGMEPQLIHICFPIKKKISTQIMCSCHNNLNTDT-YICNFCNSYTCKIPSKCKVCGMH 324
Query: 327 LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISR--STCFGCQQSLLASGNKAGLCVA 384
L+S L+ ++L + +P L ++ N + S C C + L ++
Sbjct: 325 LISMHDLSHITNNL-------QGSPLFL-EIKNEEKGPSVCVSCNKRLYDKVSQ------ 370
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGC 410
C KC FCL CD+YIHE L+ CP C
Sbjct: 371 CSKCGNLFCLACDLYIHEDLNQCPFC 396
>gi|358371546|dbj|GAA88153.1| RNA polymerase TFIIH complex subunit Ssl1 [Aspergillus kawachii IFO
4308]
Length = 320
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 34/307 (11%)
Query: 10 NGEAEEEDDEEENLNG-----------------GLEAWERSYADDRSWEALQEDESGFLR 52
GE E++DE L+G G WE S R+WE L E G +
Sbjct: 9 TGEISEDEDESNILSGSRGDTAGTSRSKRRKHRGGAEWEVS----RTWETLVEGADGTIS 64
Query: 53 PIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVA 112
+ + +R LR T +Q+G+IR+L ++IDLS++ E D RP+R ++
Sbjct: 65 STVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILIIDLSQSMTEKDLRPTRYLLSL 118
Query: 113 KQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSI 170
+ + FVREFF+QNP+SQ+G++ +KDG+A ++D+ G+P HI A+ + G S+
Sbjct: 119 RYAQEFVREFFEQNPISQLGVLGLKDGLAVRVSDMSGNPTEHISAIQSLRDQDPKGLPSL 178
Query: 171 QNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM 230
QN ++ G L PS+G RE+ +++ +L + DPGDI +TI KIR ++GL+A++
Sbjct: 179 QNGFEMARGALFHTPSHGTREIFVIFGSLLSSDPGDIHQTITTLINDKIRVGIVGLAAQV 238
Query: 231 FICKHLCQETGG----TYSVALDESHSKELILEHAPPPPAIAEF-AIASLIKMGFPQRAG 285
IC+ +C +T G TY VAL+E H ++L++ PP ++ + +SL+ MGFP R
Sbjct: 239 AICREICGKTNGGDDTTYGVALNEQHFRDLVMSVTTPPATYSQKQSTSSLLMMGFPSRTV 298
Query: 286 EGSISIC 292
E S+
Sbjct: 299 EAYPSLL 305
>gi|70952334|ref|XP_745342.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525635|emb|CAH76815.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 400
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 202/385 (52%), Gaps = 27/385 (7%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
WE+ +RSW L E+ +G L+ ++ Y + + + T ++KG+ R +
Sbjct: 35 VWEQDV--ERSWNLLVEN-NGILQHVNQET-----YEEKNKQKYKKNQTCSLRKGIFRNV 86
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
I+ D+S + E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMTERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLT 146
Query: 149 GSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
+ + + +L+ K G G S+Q L++ H LL + YG +E+LI+Y ++ TCD +
Sbjct: 147 SNIDDVLNSLVKEQKEGLQGSPSLQEGLEIAHNLLMDML-YGTKEILIMYGSIRTCDKKN 205
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
I++ + ++ + + I ++ EM I KH+C++T G Y + ++ I + A P
Sbjct: 206 ILKYLDLLIKNNMYVNCISIAPEMHILKHICEKTHGIYKICTSKNILINEINQVAETPLW 265
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQ 326
+ LI + FP + + +CSCH + Y C C + C++P++C++CG+
Sbjct: 266 MHGME-PQLIHICFPVKKKINTQIVCSCHNTLNTDT-YICNFCNSYTCKIPSKCKVCGIH 323
Query: 327 LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRST-CFGCQQSLLASGNKAGLCVAC 385
L+S L+ ++L +A+P + + + T C C Q L ++ C
Sbjct: 324 LISMHDLSHITNNL-------QASPLFIEIKNEQNYYTYCSSCNQQLYDKVSQ------C 370
Query: 386 PKCKKHFCLECDIYIHESLHNCPGC 410
KCK FCLECD++IHE L+ CP C
Sbjct: 371 TKCKNIFCLECDVFIHEDLNQCPFC 395
>gi|124513058|ref|XP_001349885.1| TFIIH basal transcription factor subunit [Plasmodium falciparum
3D7]
gi|23615302|emb|CAD52293.1| TFIIH basal transcription factor subunit [Plasmodium falciparum
3D7]
Length = 401
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 205/401 (51%), Gaps = 31/401 (7%)
Query: 15 EEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQ---YRRRLRGR 71
+E++ E + G WE+ +RSW L E+ +G L+ + + YR+ +G
Sbjct: 22 DENEIFEEITGKF-TWEQDV--ERSWNLLVEN-NGVLQHVSQENNENENKEKYRKN-QGS 76
Query: 72 SLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQI 131
SL +KG+ R++ I+ D+S + E D +P R+ V + VE+F++ FF +NP+ +
Sbjct: 77 SL-------RKGIFRHIIILFDMSSSMKERDLKPDRINVALECVESFLKNFFFKNPVGHV 129
Query: 132 GLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGH 189
G+V +K+ A + + + + +++ + G G S++ L + H LL +P YG
Sbjct: 130 GVVALKNSSAKLIQPFTSNVDDILNSILKERTAGLQGSPSLEEGLQIAHDLLIDMPLYGT 189
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALD 249
+EVLI+Y ++ TCD +I+ ++ +S I + I ++ EM I KH+C+++ G Y +
Sbjct: 190 KEVLIMYGSIRTCDKKNILNVLELLVKSNIYVNCISIAPEMHILKHICEKSNGFYKICSS 249
Query: 250 ESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRC 309
++ I +A P + LI + FP + + +CSCH ++ Y C C
Sbjct: 250 KNSLMNEINNNAETPLWMQGME-PQLIHICFPTKKKISTQIMCSCHGKLNTDT-YVCNFC 307
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ 369
+ C++P++C++CG+ L+S L+ ++L F E + N C C
Sbjct: 308 NSYTCKIPSKCKVCGIHLISMHDLSHITNNLQGSPLFIEIKNEQGN------YKVCSSCN 361
Query: 370 QSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
Q L NK C KC+ FCLECDI+IHE L+ CP C
Sbjct: 362 QQLY---NKI---YQCTKCQHIFCLECDIFIHEELNQCPFC 396
>gi|239793430|dbj|BAH72833.1| ACYPI003683 [Acyrthosiphon pisum]
Length = 245
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 152/250 (60%), Gaps = 14/250 (5%)
Query: 169 SIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 228
S+QN+L++ ++ +PS+ +E+LI+ S+LS+CDPG+I +I+ K IR S+I L+A
Sbjct: 2 SVQNSLEIALSVMKMLPSHTSKEILIIGSSLSSCDPGEINTSIEMLKTHNIRVSMIHLAA 61
Query: 229 EMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEG- 287
E+ + +HLC ET G ++V +D+ H K ++ P P + AS +KMGFPQ +
Sbjct: 62 EVRMFRHLCNETKGKHNVIVDDVHFKHILWSLVEPVP-LPNSVDASCVKMGFPQELEQKP 120
Query: 288 SISICSCH--KEVKIGV-GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIA 344
+ CSCH + K+ G+ CP+C ++ CELP EC+ CGL LVSS HLARS HHL PI
Sbjct: 121 PFTTCSCHLAEGGKLNAKGFFCPQCNSKYCELPVECKCCGLILVSSLHLARSLHHLVPIK 180
Query: 345 PFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESL 404
PF + +L S + C+GC++ + C + CKKH+C CDIY+H +L
Sbjct: 181 PFIKI------ELEEGSSAYCYGCRKRIKVPAENVYFCES---CKKHYCDGCDIYVHNTL 231
Query: 405 HNCPGCESLR 414
H CPGC R
Sbjct: 232 HVCPGCAVKR 241
>gi|344303241|gb|EGW33515.1| hypothetical protein SPAPADRAFT_60859 [Spathaspora passalidarum
NRRL Y-27907]
Length = 346
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 171/351 (48%), Gaps = 77/351 (21%)
Query: 136 VKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSIQNALDLVHGLL------N 182
+++GVAN ++++ GSP+ H+ + K GD S+QN+L++ LL N
Sbjct: 1 MRNGVANLVSEVSGSPQYHLDKIRQLKARQHNKFEPKGDPSLQNSLEMARSLLKYNFGSN 60
Query: 183 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG- 241
+ +E+L+++ AL T DPGDI +TI + I+ VIGLSA++ IC+ L T
Sbjct: 61 ANNTKNSKEILVIFGALFTSDPGDIHKTIGNLVKDDIKVKVIGLSAQVAICQELVNRTNR 120
Query: 242 -------GTYSVALDESHSKELILEHAPPPPAI---AEFAIAS----LIKMGFP---QRA 284
Y V ++ESH KEL+++ P P EF ++ +IKMGFP Q
Sbjct: 121 EEKNTSSKNYGVIMNESHFKELLMDCVTPLPLTEQEKEFEESNHGVPVIKMGFPTKIQPT 180
Query: 285 GEGSISICSCHKE------------------------------VKIGVGYTCPRCKARVC 314
G SI E + VGY CP+CK++VC
Sbjct: 181 GNSSIGNTDFTIEFPQLNASFPTAGSDDSSDVVQINHNMGATTTGVAVGYQCPQCKSKVC 240
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-- 372
LPT C +CGL L+ S HLARSYHHL P+ P+ E S + CFGCQ
Sbjct: 241 NLPTICPVCGLMLILSTHLARSYHHLVPLRPYKEVPISSTYE-----SQFCFGCQLQFPK 295
Query: 373 ---LASGNKAGL------CVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
S +K L C KC K FC+ CD+++HE LHNCPGCE+ +
Sbjct: 296 GVRTTSKSKGKLESMTSSRYRCMKCSKDFCINCDVFVHEVLHNCPGCENSK 346
>gi|348569006|ref|XP_003470289.1| PREDICTED: hypothetical protein LOC100720431 [Cavia porcellus]
Length = 637
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 167/315 (53%), Gaps = 49/315 (15%)
Query: 109 VVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSG 166
V+ A+ +E FV E+FDQNP+SQ+ ++ K A LT+L G P+ HI +L + C G
Sbjct: 349 VLKAQLLEYFVEEYFDQNPISQVCIIVTKSKRAEKLTELSGMPQKHITSLKKAIDMTCHG 408
Query: 167 DSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGL 226
+ S+ N+L + LN D+M+T+ K +KIR SVIGL
Sbjct: 409 EPSLYNSLSMAMQTLNL----------------------DLMKTL---KTAKIRVSVIGL 443
Query: 227 SAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRA-- 284
AE+ +C L +ETGGTY LDESH KEL+ H PP + + SLI MGFPQ
Sbjct: 444 WAEVRVCAALARETGGTYHEILDESHYKELLTHHVSPP-PASSSSECSLIHMGFPQHTIA 502
Query: 285 ------GEGSISICSCHKEVKIGV---GYTCPRCKARVCELPTECRICGLQLVSSPHLAR 335
+ S S+ + G+ GY P+C A+ CELP EC+ICGL LVS+PHL
Sbjct: 503 ALADQDAKPSFSMAHLDSSSEPGLALGGYFYPQCWAKYCELPVECKICGLTLVSAPHLVW 562
Query: 336 SYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLE 395
SYHHLFP+ F E L + C+GCQ L K C + FC++
Sbjct: 563 SYHHLFPLDAFQEI---PLEEYKG--ERFCYGCQGQL-----KDQHVYVCTVFQNVFCVD 612
Query: 396 CDIYIHESLHNCPGC 410
CD+++H+S+H C GC
Sbjct: 613 CDVFVHDSVHCCLGC 627
>gi|403222976|dbj|BAM41107.1| uncharacterized protein TOT_030000370 [Theileria orientalis strain
Shintoku]
Length = 468
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 203/411 (49%), Gaps = 40/411 (9%)
Query: 29 AWERSYADDRSWEAL--QEDESGFLRPIDNSAIY-HAQYRRRLRGRSLTVATARIQKGLI 85
AWE+ + D+SWE L ++ E F++P S IY + SL V + R G+I
Sbjct: 67 AWEQDF--DKSWEQLVDKDGELQFIKP--QSRIYSEPEGENEHPSESLDVISKR---GII 119
Query: 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
R + I+ D+S E DF+P R+ ++ FV++ F + P++Q+G+V +++ VAN +
Sbjct: 120 RNVVILFDMSETMLEKDFKPDRLYCSFGALKEFVKDLFSKGPITQLGMVVMRNKVANLIC 179
Query: 146 DLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
LG +PE ++ L L G G SS+QN L++ +L ++PSY REVL+++ + T D
Sbjct: 180 QLGTNPEEQLELLGNSLKEGADGPSSLQNGLEMCLNMLYELPSYSTREVLVIFGSNRTLD 239
Query: 204 PGDIMETIQKCKESKIRCSVIGLSAE----MFICKHLCQETGGTYSVALDESHSKELILE 259
G+I+ T++K K++ + + I LS E +F K T + + + + +
Sbjct: 240 AGNILVTLEKLKQNNLTINSISLSPENRRQLFGGKGCKSPETPTQQLHITSTMVSTMSDQ 299
Query: 260 HAPPPPAIAEFAIAS---------LIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCK 310
P +I + S L+K+ FP ++S+C CH + + Y CP+C
Sbjct: 300 IYMLPVSIVWNKLISLRKKWMEPVLLKVAFPPLKKTATVSLCVCHSSL-VNKAYICPQCH 358
Query: 311 ARVCELPTECRICGLQLV-----SSPHLARS--YHHLFPIAPFDEATPSRLNDLHNISRS 363
++ C +PT+C++ L+ ++ H S YHH F + + + + ++
Sbjct: 359 SKSCYIPTKCKVRTFILIGAIDHNNRHAVESTWYHHQIFQGLFITSYLPKNSSKYENTQV 418
Query: 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414
TC C N G CP C FC C++YI E LH CP C L+
Sbjct: 419 TCSSCNLR-----NNVGF--RCPSCDSWFCEYCNVYIQEELHQCPMCLFLK 462
>gi|322801575|gb|EFZ22231.1| hypothetical protein SINV_15041 [Solenopsis invicta]
Length = 202
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 123/199 (61%), Gaps = 22/199 (11%)
Query: 223 VIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQ 282
VIGL+AE++ICK + TGG +SVALD+ H KE + H PPPA A+L+KMGFP
Sbjct: 1 VIGLAAELYICKRMANLTGGEHSVALDDKHYKEQLNAHIDPPPAATRLD-AALVKMGFPH 59
Query: 283 RA-----GEGSISICSCHKE-----VKI-GVGYTCPRCKARVCELPTECRICGLQLVSSP 331
A + S+++C CH + VK+ GY CP+C ++ CELP ECR CGL LVS+P
Sbjct: 60 HALHSSAPDTSMTVCMCHAQNSDEPVKLMTTGYLCPQCLSKHCELPVECRACGLTLVSAP 119
Query: 332 HLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKH 391
HLARSYH+LFP+ PF E S CFGCQ++L K C KC +
Sbjct: 120 HLARSYHYLFPVDPFKEIASES-------DHSFCFGCQKALAQKDKKV---YTCGKCNQT 169
Query: 392 FCLECDIYIHESLHNCPGC 410
FCL+C+I+IHE LH CPGC
Sbjct: 170 FCLDCEIFIHEILHTCPGC 188
>gi|242807960|ref|XP_002485064.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715689|gb|EED15111.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 313
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 149/241 (61%), Gaps = 16/241 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE S R+WE++ E G + + + +R LR T +Q+G+IR+L
Sbjct: 41 WEVS----RTWESVVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLI 90
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+DLS++ AE D RP+R ++ + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G
Sbjct: 91 LVLDLSQSMAEKDIRPTRYLLALRYAQEFVIEFFEQNPISQLGVIGMRDGLAVRISDMSG 150
Query: 150 SPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI A+ + G S+QNAL++ G L PS+G REVLI++ +L + DPGDI
Sbjct: 151 NPTDHITAIHALRSDDPKGLPSLQNALEMARGALFHTPSHGTREVLIVFGSLLSSDPGDI 210
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPP 263
+T++ KIR ++GL+A++ IC+ LC +T G Y VAL+E H +EL++E P
Sbjct: 211 HQTLKSLVADKIRVGIVGLAAQVAICRELCAKTNGGDDTVYGVALNEQHFRELMMEVTIP 270
Query: 264 P 264
P
Sbjct: 271 P 271
>gi|313239111|emb|CBY14088.1| unnamed protein product [Oikopleura dioica]
Length = 369
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 187/398 (46%), Gaps = 59/398 (14%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WEAL+ED++G L I + +RL + A + ++R+
Sbjct: 13 WEGGY--ERTWEALREDDTGAL-------ISGSSAAKRLFAKKRLAQEAGQRIHIVRHCV 63
Query: 90 IVIDLSRAAAEMDFR----PSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 145
+ +DLSR+ A+ D R P+R + ++ FV +FF PL Q+ LV +++ AN +
Sbjct: 64 LALDLSRSMADPDLRIDRYPNRAGCAVRSLKEFVPKFFASCPLGQLALVILQNKRANIVV 123
Query: 146 DLGGSPESHIKAL----MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
LGGS +KAL + G S+ N + +LN + + +RE++ + +L+T
Sbjct: 124 PLGGSEARLLKALNDIEVKGFKTGGQCSMVNGIAASKSMLNAVGEHSNREIIFVVGSLNT 183
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHA 261
D TI+ IRCSV+ LSAE+ I K L + T G Y V LD + LE
Sbjct: 184 IDVTSPFATIETVANEGIRCSVVSLSAEVNIWKKLAERTDGKYFVPLDPIDVSDK-LEEL 242
Query: 262 PPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECR 321
PP + L+KMGFPQ V +PT C
Sbjct: 243 SRPPVESSSRQGVLVKMGFPQ------------------------------VKAIPTLCD 272
Query: 322 ICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLN---DLHNISRST------CFGCQQSL 372
+C L LVS+ HLAR YHHLFP + + P + DL + RS C GC +
Sbjct: 273 VCKLSLVSAAHLARCYHHLFPPSSVTPSIPEQSGEEIDLE-LERSQFEKIGPCVGCNYAP 331
Query: 373 LASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ S + V C KC C ECD +I E LH+CPGC
Sbjct: 332 I-SVEEGRQFVVCDKCLNSLCGECDGFIDEHLHSCPGC 368
>gi|209880135|ref|XP_002141507.1| suppressor of stem-loop protein 1 [Cryptosporidium muris RN66]
gi|209557113|gb|EEA07158.1| suppressor of stem-loop protein 1, putative [Cryptosporidium muris
RN66]
Length = 424
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 198/400 (49%), Gaps = 24/400 (6%)
Query: 27 LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQY---RRRLRGRSLTVATARIQKG 83
L WE+ +++WE L E SG L +D+S + Q+ ++ L + ++G
Sbjct: 23 LYTWEQGV--NKTWEKLVETSSG-LALLDHS-LQSDQWNITKQELDDILKISKSLNTRRG 78
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+R + I++D+S + E+D++P R+ + + ++ F+ +NPL+QI ++++++G+ +
Sbjct: 79 FLRNIVIILDMSSSMLELDYKPDRLQCMVRCIDTFICNLLQENPLTQISVISIRNGLTSI 138
Query: 144 LTDLGGSPESHIKALM--GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
+T + + ++ K GCSG SI+N L+ LL IP YG +E++ ++ +
Sbjct: 139 VTTYNSNYREIVSGILSEAKNGCSGVMSIRNGLEKAKQLLASIPPYGTKEIVFFLGSMRS 198
Query: 202 CDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEH 260
D ++ E + I + + E+FI K + +TGG AL+ H +L+LE+
Sbjct: 199 IDNDSMLNEWLDDFIAHNIVINALLFIPELFIIKTITTKTGGICLCALNSEHMLQLLLEN 258
Query: 261 APPPPAIAEFAI---ASLIKMGFPQRAGEGSISI-CSCHKEVKIGVGYTCPRCKARVCEL 316
PP+ ++ +L+ MGFP + CSCHK + GY CPRCK+ VC L
Sbjct: 259 FVKPPSYSQLNTPLHINLVPMGFPMYFNNSGYPLQCSCHKSIT-SDGYCCPRCKSLVCYL 317
Query: 317 PTECRICGLQLVSSPHLARSYHHLF--PIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
P +C IC L L S+ HL +S+ LF P + P +I R C CQ +
Sbjct: 318 PIKCPICNLYLASANHLTKSFAFLFKPPSMEVLQLNPGEYKS--DIPRH-CRFCQNLFTS 374
Query: 375 SGN-KAGL---CVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ G + C C C++C I +LH CP C
Sbjct: 375 KATYRNGFPFSLIKCTNCCSFLCIDCCKLILLALHQCPEC 414
>gi|300709301|ref|XP_002996816.1| hypothetical protein NCER_100001 [Nosema ceranae BRL01]
gi|239606142|gb|EEQ83145.1| hypothetical protein NCER_100001 [Nosema ceranae BRL01]
Length = 335
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 198/390 (50%), Gaps = 59/390 (15%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPID-NSAIYHAQYRRRLRGRSLTVATARIQKG 83
GG AWE+ Y R+W L ++ S ++ N +Y+ + +KG
Sbjct: 3 GGF-AWEKEYK--RTW--LDDERSDTIKEFKLNKFVYNDR-----------------KKG 40
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
++R+L+I+ID+S + + D+ PS V + +E F+ FF +NP+S + TV +
Sbjct: 41 VLRHLHILIDISSSIDKNDYLPSIRKNVIRSLEKFIPTFFLENPISGLSFSTVNEKTVK- 99
Query: 144 LTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH-REVLILYSALSTC 202
+ I L+ + G G+ S+ N L + ++QI SY RE+L++ S+L
Sbjct: 100 -----STNSVEIADLLNQKG-EGNFSLLNGL---YDAIDQIKSYTFCREILVIVSSLVLK 150
Query: 203 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAP 262
DP + I ++ I+ ++I L E+ I K++ + TGG + V L+ H IL
Sbjct: 151 DPDSYTDVIDLLRKHNIKVNIISLCGELMIYKNIVESTGGKFFVPLNIDHF-NYILRCMT 209
Query: 263 PPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRI 322
P + I +LIK+GFP+ E + C+CH +++ VGY CP CK +C LP C I
Sbjct: 210 VPGELNSSTI-NLIKLGFPKVIYEEGV--CACHLQLQ-SVGYECPLCKTFICSLPMGCPI 265
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLC 382
C LQLVSS ++A+++ H++P+APF + CF C + GN
Sbjct: 266 CELQLVSSLNIAKAFQHMYPLAPFTKCC-----------NGVCFVCN----SPGN----- 305
Query: 383 VACPKCKKHFCLECDIYIHESLHNCPGCES 412
+C KC +C CD+++H +L+ C GC++
Sbjct: 306 FSCEKCNSVYCDSCDLFVHNNLNFCLGCKN 335
>gi|348557313|ref|XP_003464464.1| PREDICTED: general transcription factor IIH subunit 2-like [Cavia
porcellus]
Length = 302
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 160/309 (51%), Gaps = 52/309 (16%)
Query: 115 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQN 172
+E FV E+FDQN +SQIG++ K A LT+L G+P HI +L + C G+ S+ N
Sbjct: 23 LEYFVEEYFDQNSISQIGIIVTKR--AEKLTELSGNPRKHITSLKKATDMTCHGEPSLYN 80
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
+L + LN + D+M+T++ K VIG+SAE+ +
Sbjct: 81 SLSMAMQTLNFL---------------------DLMKTLKTAKMC-----VIGMSAEVRV 114
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRA-------- 284
C L +ETG TY LDESH KEL+ H PPPA + SLI MGFPQ
Sbjct: 115 CTGLARETGSTYHEILDESHYKELLTHHVSPPPASSSSE-CSLIHMGFPQHTIAALADQD 173
Query: 285 GEGSISICSCHKEVKIGV---GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLF 341
+ S S+ + G+ GY P+C A+ CELP EC++CGL LVS+PHLA YHHLF
Sbjct: 174 AKPSFSMAHLDSSSEPGLALGGYFYPQCWAKYCELPVECKMCGLTLVSAPHLAWLYHHLF 233
Query: 342 PIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIH 401
P+ F E C+GCQ L K C + FC++CD+++H
Sbjct: 234 PLDAFQEIPLEEYK-----GERFCYGCQGQL-----KDQHVYVCIVFQNVFCVDCDVFVH 283
Query: 402 ESLHNCPGC 410
+S+H CPGC
Sbjct: 284 DSVHCCPGC 292
>gi|119182598|ref|XP_001242425.1| hypothetical protein CIMG_06321 [Coccidioides immitis RS]
Length = 364
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 15/233 (6%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
R+WE+L E G + + A R+R T +Q+G+IR+L +V+DLS A
Sbjct: 68 RTWESLVEGADGTISST-VEGLLEAGKRKR--------DTTPLQRGIIRHLILVLDLSIA 118
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
+E D RP+R ++ + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 119 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 178
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ + +G S+QNAL++ G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 179 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGALLSSDPGDIHKTITSLV 238
Query: 216 ESKIRCSVIGLSAEMFICKHLCQETGG----TYSVALDESHSKELILEHAPPP 264
KIR V+GL+AE+ IC+ +C +T Y VAL+E H +EL++E PP
Sbjct: 239 TDKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPP 291
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 4/42 (9%)
Query: 375 SGNKAGLCVA----CPKCKKHFCLECDIYIHESLHNCPGCES 412
S +AG+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 295 SQKQAGMSVSSRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 336
>gi|365759512|gb|EHN01295.1| Ssl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 303
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 149/240 (62%), Gaps = 15/240 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + ++I A+ +R + +++T Q+G
Sbjct: 72 NGGY-AWEDEIK--RSWDLVKVDDEGDMASL-VASIVEARKKRTAK-KNITP----YQRG 122
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RPSR ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 123 IIRSLILTLDCSEAMLEKDLRPSRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 182
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 183 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 242
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 243 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 302
>gi|323347610|gb|EGA81877.1| Ssl1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 302
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 149/240 (62%), Gaps = 15/240 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + ++I A+ ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASL-VASIVEAR-KKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
>gi|76157401|gb|AAX28337.2| SJCHGC09266 protein [Schistosoma japonicum]
Length = 234
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 140/223 (62%), Gaps = 9/223 (4%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIY--HAQYRRRLRGRSLTVATARIQKGLIRY 87
WE Y +++W A++EDESG L I+ H Q R++ R R +T ++ G++R+
Sbjct: 17 WESGY--EKTWNAIREDESGRLVTTLEQLIHDAHTQIRKK-RKRIGVGSTGFVRLGMMRH 73
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
L+++IDLS+A E D +P+R++ K FVRE+FDQNP+SQ+G++ D A LT+L
Sbjct: 74 LFLIIDLSQAMNEQDLKPNRLICTIKAACTFVREYFDQNPISQLGIIVTSDRRAERLTEL 133
Query: 148 GGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
G+P H+ AL + C+G+ S+QNAL L L + H E+++L ++L+TCDPG
Sbjct: 134 SGNPRPHLAALQSLYSRTCAGEPSLQNALLLAESRLKY--TIHHNEIVVLIASLTTCDPG 191
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL 248
DI +TI+ ++I CSVI L+ E+F+ + L Q T GT+ V +
Sbjct: 192 DIHQTIKSLSSNRIHCSVISLAVEVFVYRALAQFTQGTFHVIM 234
>gi|225554656|gb|EEH02952.1| transcription factor TFIIH complex subunit Ssl1 [Ajellomyces
capsulatus G186AR]
Length = 467
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 146/274 (53%), Gaps = 47/274 (17%)
Query: 182 NQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG 241
+ P++G REVLI++ AL + DPGDI +TI KIR S+IGL+A++ IC+ LC T
Sbjct: 178 SHTPTHGTREVLIIFGALLSSDPGDIHQTITALVADKIRISIIGLAAQVAICRDLCARTN 237
Query: 242 G----TYSVALDESHSKELILE-HAPPPPAIAEFAI------------------ASLIKM 278
Y VAL+E H +EL ++ APP +A + +SL+ M
Sbjct: 238 NGDDTVYGVALNEQHFRELFMDVTAPPVTTVAPTSTPTASSANGPKTTTTNTTASSLLMM 297
Query: 279 GFPQRAGEGSISI--CSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARS 336
GFP + + C+CH + GY C RC A+VC LP+ C CGL L+ S HLARS
Sbjct: 298 GFPSLTLTTTPTPSLCACHSKPS-RAGYLCCRCNAKVCTLPSSCPCCGLTLILSTHLARS 356
Query: 337 YHHLFPIAPFDEATPSRLNDLHNISRSTCFGC-----QQSLLASGN-----KAGLCVA-- 384
YHHLFP+ + E + R + S CF C + L SG KA + V
Sbjct: 357 YHHLFPLMNWVEVSWRRAARKRSAS---CFACGVGFPRMPKLVSGEPEETAKAAVGVGVS 413
Query: 385 ------CPKCKKHFCLECDIYIHESLHNCPGCES 412
CP C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 414 VSGRYECPVCECHFCIDCDVFAHEVVHNCPGCQS 447
>gi|428176074|gb|EKX44960.1| SSL1 transcription factor & nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 289
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 165/321 (51%), Gaps = 50/321 (15%)
Query: 100 EMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 159
+ D RP+R+ VV + V +F+ FFDQNP+SQ+ LV ++ G A LT+L G+ H L
Sbjct: 3 QRDMRPTRLGVVQQVVGSFLDNFFDQNPISQVSLVELRGGKAEKLTELSGNSRHHKNKLE 62
Query: 160 GKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 219
+L + + ++ SY R ++ PG + + K + +
Sbjct: 63 ERLAAHRSAGAGMPSMRAGVVWDKRSSYDVRIFELM-------RPGGHLSDY-RLKSAGV 114
Query: 220 RCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA----IAEFAIASL 275
+ +++G++AE+++ + + + TGG+YSVA ++++L+H P P + A+
Sbjct: 115 KVNIVGMAAELYVARAVSKRTGGSYSVATHAVQVRDMVLKHTSPSPVEEGEGGKEKPAAG 174
Query: 276 IKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLAR 335
+ +GFP+++ G++ G+ CPRC V E+P +C +CGL+L+SS HLAR
Sbjct: 175 MWVGFPRKS-YGALG------------GWQCPRCMDVVKEIPADCGLCGLKLLSSSHLAR 221
Query: 336 SYHHLFPIAPF----DEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKH 391
SYHHLFP+ F DE P+ S STC GC V K KH
Sbjct: 222 SYHHLFPVQSFHELEDEEGPA-------TSTSTCGGCG-------------VLLGKESKH 261
Query: 392 -FCLECDIYIHESLHNCPGCE 411
FC CD +IHE LH CPGCE
Sbjct: 262 VFCGLCDGFIHEMLHVCPGCE 282
>gi|270012914|gb|EFA09362.1| hypothetical protein TcasGA2_TC001923 [Tribolium castaneum]
Length = 191
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 122/177 (68%), Gaps = 4/177 (2%)
Query: 115 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQN 172
+E F+ EFFDQNP+SQ+G++ + + A ++DL G+ HIKA+ + + G+ S+QN
Sbjct: 7 LENFIEEFFDQNPISQLGIIIMHNKRAEKISDLAGNARKHIKAVQNLKQTSLVGEPSLQN 66
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
++++ L +PS+ RE+L++ +L+TCDPGDI TIQ K +RCSVIGL+AE+++
Sbjct: 67 SIEMALRALKLLPSHASREILVIMGSLTTCDPGDITTTIQMLKTEGVRCSVIGLAAEVYV 126
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFP-QRAGEGS 288
C+ L +TGG Y+V LD+ H K+L+ + PPPA A+ ++LIKMGFP Q + EG+
Sbjct: 127 CRQLANQTGGLYNVILDDCHFKDLLYQQVDPPPA-AQTLESNLIKMGFPHQMSVEGT 182
>gi|189240734|ref|XP_967768.2| PREDICTED: similar to btf [Tribolium castaneum]
Length = 236
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 122/177 (68%), Gaps = 4/177 (2%)
Query: 115 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQN 172
+E F+ EFFDQNP+SQ+G++ + + A ++DL G+ HIKA+ + + G+ S+QN
Sbjct: 52 LENFIEEFFDQNPISQLGIIIMHNKRAEKISDLAGNARKHIKAVQNLKQTSLVGEPSLQN 111
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
++++ L +PS+ RE+L++ +L+TCDPGDI TIQ K +RCSVIGL+AE+++
Sbjct: 112 SIEMALRALKLLPSHASREILVIMGSLTTCDPGDITTTIQMLKTEGVRCSVIGLAAEVYV 171
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFP-QRAGEGS 288
C+ L +TGG Y+V LD+ H K+L+ + PPPA A+ ++LIKMGFP Q + EG+
Sbjct: 172 CRQLANQTGGLYNVILDDCHFKDLLYQQVDPPPA-AQTLESNLIKMGFPHQMSVEGT 227
>gi|401825920|ref|XP_003887054.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon hellem
ATCC 50504]
gi|392998212|gb|AFM98073.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon hellem
ATCC 50504]
Length = 340
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 38/334 (11%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
+KG++R+L++++D+S A + DF P+ VA+ +E F+ F+++NPLS + ++ +D
Sbjct: 38 RKGIVRHLHVIVDVSEAIDKSDFLPTFRTNVARILEDFIPSFYNENPLSTLSFLSTRDVC 97
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH-REVLILYSAL 199
++ + + I A +G+ G S S+ N L+ G + + + H +E+L++ ++
Sbjct: 98 VKYISSM----DMDIHAFLGQTG-SKWFSLLNGLE---GSIEIMENTMHVKEILVIVAST 149
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILE 259
ST DP E + + K I+ I L E+ + K + + TGG + V +D H ++ E
Sbjct: 150 STRDPHGYTEVLNRLKTHNIKVHFISLCGEVTLYKSISKATGGRFYVPIDVGHLSMIMKE 209
Query: 260 HAPPPPAIAEF--AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+ P +F SL+K+GFP E S+ C+CH EVK VGY CP CK VC LP
Sbjct: 210 LSHP----TDFNGTTLSLVKIGFPLPTMESSV--CACHLEVK-SVGYECPVCKTMVCSLP 262
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN 377
C IC QLVS+ +L++S ++P+ PF E + C CQ N
Sbjct: 263 ISCPICNTQLVSTLNLSKSLRFIYPLKPFIER-----------AEDACRICQ-------N 304
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
K C CK +C C+ ++H +L C CE
Sbjct: 305 KGAY--QCDLCKSTYCSYCNGFVHSTLSFCIYCE 336
>gi|367054704|ref|XP_003657730.1| hypothetical protein THITE_2123698 [Thielavia terrestris NRRL 8126]
gi|347004996|gb|AEO71394.1| hypothetical protein THITE_2123698 [Thielavia terrestris NRRL 8126]
Length = 282
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 14/211 (6%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
AWE RSWE + E E G I A+ A+ RRRL T +Q+G+IR+L
Sbjct: 59 AWEDI---KRSWENVVEAEDG---SITIEALLEAEKRRRL-----MRDTTPLQRGIIRHL 107
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+D+S A AE D P+R ++ FVRE+F+QNP+SQ+G++ ++DGVA ++D+G
Sbjct: 108 MLVLDMSFAMAEKDLLPTRYLLTLNYAVDFVREYFEQNPISQMGIIAMRDGVAVRISDMG 167
Query: 149 GSPESHIKAL---MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
G+P HI+ L + G+ S+QNAL++ G L PS+G REVLI+Y AL + DPG
Sbjct: 168 GNPAEHIEKLRTWAAQGEPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLSSDPG 227
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHL 236
DI +TI +IR S++GLSA++ IC L
Sbjct: 228 DIHDTIANLITDRIRVSIVGLSAQVAICAEL 258
>gi|396081175|gb|AFN82793.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
romaleae SJ-2008]
Length = 340
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 173/334 (51%), Gaps = 38/334 (11%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
+KG++R+L+++ID+S A + DF P+ VA+ +E F+ F+++NPLS + ++ +D
Sbjct: 38 RKGIVRHLHVIIDVSEAIDKSDFLPTFRTNVARILEEFIPSFYNENPLSTLSFLSTRDVC 97
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH-REVLILYSAL 199
++ + + + A +G+ G S S+ N L+ G + + + H +E+L++ ++
Sbjct: 98 VKYISSM----DMDVHAFLGQTG-SKWFSLLNGLE---GSIEIMRNTMHVKEILVIVAST 149
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILE 259
ST DP E + K K I+ I L E+ + K + + TGG + V +D H ++ E
Sbjct: 150 STRDPHGYTEVLNKLKTYNIKVHFISLCGELTLYKSISKATGGRFYVPVDVGHLSMIMKE 209
Query: 260 HAPPPPAIAEF--AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+ P +F SL+K+GFP E S+ CSCH E+K +GY CP CK VC LP
Sbjct: 210 LSHP----TDFNGTTLSLVKIGFPLPTIESSV--CSCHLEMK-SIGYECPVCKTMVCSLP 262
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN 377
T C ICG QLVS+ +L++S L+P+ PF E + C C+ +
Sbjct: 263 TSCPICGTQLVSTLNLSKSLRFLYPLKPFIEK-----------AEGICRICR-------D 304
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
K C CK FC C+ H +L C CE
Sbjct: 305 KGAY--QCELCKSTFCSYCNGLAHNTLSFCIYCE 336
>gi|303388880|ref|XP_003072673.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301815|gb|ADM11313.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 340
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 187/386 (48%), Gaps = 58/386 (15%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE+ Y R+WE + + + I+++ R KG++R+L
Sbjct: 6 SWEQEY--KRTWEDRSDRKVNEFN--TETGIFYSNNR----------------KGIVRHL 45
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++ID+S A + DF P+ VAK +E F+ F+ +NPLS + ++V+D ++ +
Sbjct: 46 HVIIDVSEAIDKSDFLPTFRTNVAKILEGFIPSFYSENPLSTLSFLSVRDVCVKYISSM- 104
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH-REVLILYSALSTCDPGDI 207
+ I A +G+ G S S+ N L+ G + I + H +E+L++ ++ ST DP
Sbjct: 105 ---DMDIHAFLGQTG-SKWFSLLNGLE---GSVEIIKNTTHVKEILVIVASTSTRDPHGY 157
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
E + K K I+ I L E+ + K + + T G + V +D H ++ E + P
Sbjct: 158 TEVLTKLKVHNIKVHFISLCGEVTLYKSISKATEGRFYVPVDVGHLSIIMKELSHP---- 213
Query: 268 AEF--AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGL 325
+F SL+K+GFP E S+ C+CH E+K GY CP CK VC LP C IC
Sbjct: 214 TDFNGTTLSLVKIGFPLPVIEPSV--CACHLEMK-SAGYECPVCKTMVCSLPVSCPICNT 270
Query: 326 QLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVAC 385
QLVS+ +L++S L+P+ PF E C CQ +K G C
Sbjct: 271 QLVSTLNLSKSLRFLYPLKPFIEK-----------EGKMCRICQ-------SKGGY--QC 310
Query: 386 PKCKKHFCLECDIYIHESLHNCPGCE 411
CK FC C+ ++H +L C CE
Sbjct: 311 ELCKSIFCNSCNGFVHNTLSFCIYCE 336
>gi|19074105|ref|NP_584711.1| similarity to SUPPRESSOR OF STEM LOOP PROTEIN 1 [Encephalitozoon
cuniculi GB-M1]
gi|19068747|emb|CAD25215.1| similarity to SUPPRESSOR OF STEM LOOP PROTEIN 1 [Encephalitozoon
cuniculi GB-M1]
gi|449328973|gb|AGE95248.1| suppressor of stem loop protein 1 [Encephalitozoon cuniculi]
Length = 340
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 169/334 (50%), Gaps = 38/334 (11%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
+KG++R+L+I+ID+S A + DF P+ V K +E F+ F+ +NPLS + ++++D
Sbjct: 38 RKGIVRHLHIIIDVSEAIDKSDFLPTFRANVTKVLEGFIPSFYSENPLSTLSFLSIRD-- 95
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH-REVLILYSAL 199
S + I A +G+ G S S+ N L+ G + + + H +E+L++ ++
Sbjct: 96 --VCVKYTSSMDIDIHAFLGQTG-SKWFSLLNGLE---GSIEVMKNTMHVKEILVIVAST 149
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILE 259
ST DP E + K + I+ I L E+ + K + + T G + V +D H ++ E
Sbjct: 150 STRDPHGYAEVLAKLRAYNIKVHFISLCGEITLYKSISKATEGRFYVPVDAGHLSAIMRE 209
Query: 260 HAPPPPAIAEF--AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+ P +F SL+K+GFP E S+ C+CH EVK G GY CP CK VC LP
Sbjct: 210 LSHP----TDFNGTKLSLVKIGFPSPMMEPSV--CACHLEVK-GAGYECPVCKTMVCSLP 262
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN 377
C IC QLVS+ +L++S L+P+ PF E + TC CQ G
Sbjct: 263 ISCPICSTQLVSTLNLSKSLRFLYPLRPFVEK-----------AEGTCRVCQ------GK 305
Query: 378 KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
A C CK FC C+ IH +L C CE
Sbjct: 306 GA---YQCELCKSTFCSYCNRLIHNTLSFCIYCE 336
>gi|326935424|ref|XP_003213771.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Meleagris gallopavo]
Length = 208
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 131/206 (63%), Gaps = 8/206 (3%)
Query: 78 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQ--IGLVT 135
+++ G++R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ G V
Sbjct: 6 GQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQDPPGHVA 65
Query: 136 VKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVL 193
+ + G+P+ HI AL + C G+ S+ N+L+L L +P + REVL
Sbjct: 66 ATEERR---ARMPGNPKKHIAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREVL 122
Query: 194 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS 253
I++S+L+TCDP +I E I+ K KIR SVIGLSAE+ +C L +ETGGTY V LDESH
Sbjct: 123 IVFSSLTTCDPANIYELIKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDESHY 182
Query: 254 KELILEHAPPPPAIAEFAIASLIKMG 279
KEL++ H PPPA + SLI+MG
Sbjct: 183 KELLMHHVSPPPASSSSE-CSLIRMG 207
>gi|425774738|gb|EKV13039.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Penicillium
digitatum PHI26]
gi|425780731|gb|EKV18732.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Penicillium
digitatum Pd1]
Length = 296
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 141/249 (56%), Gaps = 23/249 (9%)
Query: 1 MKNSERSRLNGEAEEEDD----------EEENLNGGLEAWERSYADDRSWEALQEDESGF 50
M +S+ + E+EDD + GG E WE S R+WE L E G
Sbjct: 1 MADSDEEYVGEVTEDEDDLQVTRGDISRAKRKQRGGAE-WELS----RTWETLVEGADGT 55
Query: 51 LRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVV 110
+ + + +R L+ T +Q+G+IR+L +++DLS++ +E D RP+R ++
Sbjct: 56 INSTVEGLLEAGKRKRLLKD------TTPLQRGIIRHLILILDLSQSMSEKDLRPTRYLL 109
Query: 111 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDS 168
+ + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P H+ A+ + G
Sbjct: 110 ALRYAQEFVREFFEQNPISQLGVLGLRDGLALRVSDMSGNPTGHLTAIQALKMQDPKGLP 169
Query: 169 SIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 228
S+QN L++ G L PS+G REVL +Y +L + DPGDI +TI KIR ++GL+A
Sbjct: 170 SLQNGLEMARGALFHTPSHGTREVLFIYGSLLSSDPGDIHQTIDALISDKIRVGIVGLAA 229
Query: 229 EMFICKHLC 237
++ IC+ L
Sbjct: 230 QVAICRELS 238
>gi|169596905|ref|XP_001791876.1| hypothetical protein SNOG_01225 [Phaeosphaeria nodorum SN15]
gi|160707395|gb|EAT90874.2| hypothetical protein SNOG_01225 [Phaeosphaeria nodorum SN15]
Length = 716
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 166/368 (45%), Gaps = 73/368 (19%)
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T Q+G+IR++ +V+DLS A E D RP+R + + + +VREFF+QNP+SQ+ ++ +
Sbjct: 94 TKPFQRGIIRHVVLVLDLSEAMMEKDMRPNRYITMINYAQDYVREFFEQNPISQMSVLGM 153
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILY 196
D + G+ +S G + A +VHG P
Sbjct: 154 HD-------EFVGAGQSDAIPHTKSWDKRGHRGLWIA--VVHGPRRHTPD---------- 194
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKEL 256
PGD E + ++ +I + I ++T T
Sbjct: 195 GKSLRARPGDEGEYTIATDQEMLKELLIATTTPPVI-----RQTATTTD----------- 238
Query: 257 ILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCEL 316
APPP + A+L+ MGFP R E ++C+CH + +G GYTC RC A+VC L
Sbjct: 239 ----APPPE-----SAAALMMMGFPSRVVEDKPTMCACHGNLTMG-GYTCSRCSAKVCSL 288
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFG--------- 367
P C C L L+ S HLARSYHHLFP+ + + SR + + +C
Sbjct: 289 PITCPSCQLTLLLSTHLARSYHHLFPLRNWATVSWSRAREKGSKECVSCLSSFSKPPASD 348
Query: 368 -----CQQSLLASGNKAGLCVA------------CPKCKKHFCLECDIYIHESLHNCPGC 410
+Q+L +G+K + C C+ HFC++CD++ H LHNCPGC
Sbjct: 349 TERTQTEQNLETNGHKRDADDSEEQKASESGRYECRACESHFCIDCDMFAHMVLHNCPGC 408
Query: 411 ESLRQSNP 418
L Q +P
Sbjct: 409 --LSQLDP 414
>gi|451994856|gb|EMD87325.1| hypothetical protein COCHEDRAFT_1197444 [Cochliobolus
heterostrophus C5]
Length = 718
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 163/383 (42%), Gaps = 81/383 (21%)
Query: 77 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTV 136
T Q+G+IR++ +V+DLS A E D RP+R + + + ++REFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINYTQDYIREFFEQNPISQMSVLGM 152
Query: 137 KD-----GVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYG-HR 190
D G +N L P + G H L Q G R
Sbjct: 153 HDECSRVGESNTL------PHAQSWHTRG-----------------HRRLRQPAESGPWR 189
Query: 191 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDE 250
I D GD E + +R ++ + I + L +
Sbjct: 190 HSPICKGVCEGPDTGDESEYTIATDQEMLRELLLATTTPPVIRQPLVTD----------- 238
Query: 251 SHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCK 310
+ AP A + + A+L+ MGFP R E +++C+CH + +G GYTC RC
Sbjct: 239 --------KTAPATTAQSSESAAALMMMGFPSRVVEDQLTMCACHGNLTMG-GYTCSRCS 289
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGC-- 368
A+VC LP C C L L+ S HLARSYHHLFP+ + + SR ++ + C GC
Sbjct: 290 AKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVSWSRAREMGS---KQCVGCLA 346
Query: 369 ---------------QQSLLASGNKA------------GLCVACPKCKKHFCLECDIYIH 401
QQ A K C C+ HFC++CD++ H
Sbjct: 347 AFSNPPSNAKENGEAQQDTEAKVTKKHDDDSEEQKASESGRYECRACESHFCIDCDMFAH 406
Query: 402 ESLHNCPGCESLRQSNPVVANEG 424
LHNCPGC N + G
Sbjct: 407 MVLHNCPGCLGRLDPNTAATSNG 429
>gi|359474618|ref|XP_003631495.1| PREDICTED: uncharacterized protein LOC100853435 [Vitis vinifera]
Length = 235
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 82/94 (87%)
Query: 115 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNAL 174
++ +EFFDQ+P SQIGLVT+KDG+A CLTDLGGS +SH+KALMGKL CSGDSS+QNAL
Sbjct: 142 LQTMKQEFFDQDPFSQIGLVTIKDGLAPCLTDLGGSIDSHVKALMGKLECSGDSSLQNAL 201
Query: 175 DLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
+LV G LN IPSYG+REVLILYSALS CD GDIM
Sbjct: 202 NLVRGYLNLIPSYGYREVLILYSALSACDTGDIM 235
>gi|123469529|ref|XP_001317976.1| transcription factor ssl1 family protein [Trichomonas vaginalis G3]
gi|121900723|gb|EAY05753.1| transcription factor ssl1 family protein [Trichomonas vaginalis G3]
Length = 394
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 194/413 (46%), Gaps = 47/413 (11%)
Query: 20 EENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATAR 79
EE + ++ W R D W+ L E+ LR + + + ++ ++ + A
Sbjct: 3 EEGKSNLVKRWGRR---DNIWDNLGVGENNDLRLVQETEQWDSEVEKKKK------ALLN 53
Query: 80 IQKGLIRYLYIVIDLSRAAAEMD-FRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+GLIR L +++DLS EM F +RM ++ Q F+ +FF QNPLSQ+ ++ +
Sbjct: 54 ASRGLIRSLVLILDLSTNGLEMRLFNQNRMKLIQDQTIDFINDFFVQNPLSQLSILATYE 113
Query: 139 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLN---QIPSYGH---- 189
LT L + + H+K + + G+ S++++L + +L + P
Sbjct: 114 STCRILTPLSCNVQDHVKKIKSLSLEDHGGEPSLESSLSIATAILGNGEKNPGLAQISTT 173
Query: 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALD 249
+EVLI+Y +L+TCD I +T+ ++SKI+ S+IGL A++F+ + + ET G Y V +
Sbjct: 174 KEVLIVYGSLTTCDNSPIYKTLNLVRDSKIKVSIIGLGAKVFVLEKIAAETKGEYFVPVS 233
Query: 250 ESHSKELILEHAPPPPAIAE-------FAIASLIKMGFPQ----RAGEGSISICSCHKEV 298
H ++ PP + F ASL P + S + +
Sbjct: 234 IEHLHDIFHSFVIPPEFMLNQRRYFIPFGFASLASPTVPSFDVFKLMSNPPSKTNKPETP 293
Query: 299 KIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPF-DEATPSRLNDL 357
+ G GY CPRC RV +P C +C L+S +L R+ HL P+ F E +P
Sbjct: 294 QYG-GYQCPRCGTRVFSIPCFCPVCRDFLISPAYLKRTVCHLTPVPLFVSEESP------ 346
Query: 358 HNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
CFGC + CPKC K FC +CD +IHE L +CPGC
Sbjct: 347 ---DTDHCFGCNMPF------EEIPCRCPKCNKCFCKKCDPFIHEVLQSCPGC 390
>gi|194383680|dbj|BAG59198.1| unnamed protein product [Homo sapiens]
Length = 203
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGL 226
+ I+ + KI+ VI +
Sbjct: 183 YDLIK--VDQKIKTKVITV 199
>gi|67528154|ref|XP_661887.1| hypothetical protein AN4283.2 [Aspergillus nidulans FGSC A4]
gi|40739631|gb|EAA58821.1| hypothetical protein AN4283.2 [Aspergillus nidulans FGSC A4]
Length = 277
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 120/194 (61%), Gaps = 8/194 (4%)
Query: 38 RSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
R+WE L E G + + ++ +R L+ T +Q+G+IR++ +++DLS++
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKD------TTPLQRGIIRHIILILDLSQS 101
Query: 98 AAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157
E D RP+R ++ + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 102 MMEKDLRPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISA 161
Query: 158 L--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 215
+ + G S+QN L++ G L PS+G RE+ I++ +L + DPGDI +TI
Sbjct: 162 IQDLRSQDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLI 221
Query: 216 ESKIRCSVIGLSAE 229
+ KIR ++GL+A+
Sbjct: 222 DDKIRVGIVGLAAQ 235
>gi|440493575|gb|ELQ76030.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Trachipleistophora
hominis]
Length = 334
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 185/383 (48%), Gaps = 54/383 (14%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE+ Y R+WE L EDE N+++ + L A +KG+IR+
Sbjct: 6 SWEKQYK--RTWENLNEDEE------KNTSL----------EKKLHHTYAPYKKGIIRHF 47
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+I+ID S + DF PS V ++ F+++F+D+NP+S + L+ ++ C + +
Sbjct: 48 HIIIDSSASIELNDFLPSFRYHVTTKLNHFIKKFYDENPISVLSLLIYRNN--KCESYIV 105
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
S + G G +G+ S+ N+L++ LN+ +E+L++ +L T D +
Sbjct: 106 LDRLSETEGFFGVAG-TGEFSLINSLNVSLEFLNRDDYI--KEILVITGSLYTID----I 158
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIA 268
E ++ K+ KI I AE++ K + ++T G Y V ++ S L LE P +I
Sbjct: 159 EELRSFKDIKIH--FIAFRAEVYFFKDVAEKTHGKYYVPVEMS-DISLFLESFCMPNSIN 215
Query: 269 EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
+ +L+K+GFPQ G + C + K GY CP C +VC LP +C +C QLV
Sbjct: 216 SGSAHNLLKLGFPQ-VLTGDLVCACCFRYSK--KGYECPVCHTKVCNLPIKCPVCKTQLV 272
Query: 329 SSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKC 388
+S LA+S ++ +P+ F++A + C+ + G+ C KC
Sbjct: 273 TSNILAQSLYYCYPLEDFEKAGGA---------------CR---VCGGDGRD---RCKKC 311
Query: 389 KKHFCLECDIYIHESLHNCPGCE 411
+C C +IH L+ C C+
Sbjct: 312 GSIYCERCSYFIHNDLYFCIYCD 334
>gi|402592150|gb|EJW86079.1| hypothetical protein WUBG_03012, partial [Wuchereria bancrofti]
Length = 220
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 128/228 (56%), Gaps = 13/228 (5%)
Query: 17 DDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTV 75
DDE E WE YAD + + L+EDESG + I + ++RL R
Sbjct: 3 DDEPEGY-----TWEVDYADGLNIRDVLREDESGSIEKSVAKLILDTKRKKRLNNRP--- 54
Query: 76 ATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVT 135
A+++ G++RY+Y+VID S + A+ +PSR+ V K + F+ +F +QNP+SQ+G+V
Sbjct: 55 --AKVRLGIMRYVYLVIDCSFSMADKSMQPSRLAVTIKALNQFLDKFSEQNPISQVGVVV 112
Query: 136 VKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVL 193
KD A L L G+ ++L + +L C G+ S+ N+L L+ P + REV+
Sbjct: 113 CKDKRAERLIPLTGNVRLVKESLSTITELLCHGEFSLHNSLMATIRSLHSYPGHASREVI 172
Query: 194 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG 241
++ ++LSTCDP I T + K IRCSVI LSAE+F+ K LC T
Sbjct: 173 LIVASLSTCDPSSIFGTFELLKRYHIRCSVISLSAEIFVFKKLCSITS 220
>gi|323353892|gb|EGA85745.1| Ssl1p [Saccharomyces cerevisiae VL3]
Length = 273
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 126/205 (61%), Gaps = 11/205 (5%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + ++I A+ +R + +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASL-VASIVEARKKRTAK-KNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGL 226
DPGDI +TI KIR G+
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKGFGV 266
>gi|145473807|ref|XP_001462567.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430407|emb|CAK95194.1| unnamed protein product [Paramecium tetraurelia]
Length = 361
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 33/360 (9%)
Query: 61 HAQYRRRLRGRSLTVATARIQKG--LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAF 118
H ++ +L + + A I + ++R L I+ID++R++ DF+PSR+ V + + AF
Sbjct: 24 HNYHQDKLHQKKESDAQFLIAQNPLIMRNLLIIIDITRSSKISDFKPSRLAVALQFLPAF 83
Query: 119 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL------GCSGDSSIQN 172
+ +F + NPLSQIG+ ++ + D S +IK + + G S + +Q
Sbjct: 84 IEQFLECNPLSQIGIAVAEEYRCKTILDFTSS-WVNIKQYLSTIHSINEAGFSMAACLQT 142
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
AL + + + +L++ ++ + D D+ E ++C+ + I+ +VI + +
Sbjct: 143 ALH----VFSTTQLHAQSSILVVTTSTYSDDKLDLNEWSERCQSAAIQINVISFTGSINQ 198
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISIC 292
+ Q T G Y L+E + I + P + I L+K+GFPQ+ ++C
Sbjct: 199 LIKITQATDGQYLCPLNEFQFSQEIQKFVSPQESKNHKMITQLVKIGFPQKLIVSQPTLC 258
Query: 293 SCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARS--YHHLFPIAPFDEAT 350
CH E+ Y CP C ++VC P C IC +V + RS Y+ L E T
Sbjct: 259 QCHLEIVYNF-YKCPVCYSKVCSPPLLCPICSTWIVLPHQILRSDGYNTLGVF----EIT 313
Query: 351 PSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L+ + C GC + + C +CK FCL+CDI IH CPGC
Sbjct: 314 NDGLDHV-------CSGCLEPTTVIHS------TCERCKNFFCLDCDILIHSKFKVCPGC 360
>gi|429965596|gb|ELA47593.1| transcription factor ssl1, partial [Vavraia culicis 'floridensis']
Length = 381
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 182/383 (47%), Gaps = 54/383 (14%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE+ Y R+WE L EDE + + L A +KG+IR+
Sbjct: 53 SWEKQYK--RTWENLNEDEE----------------KNVSLEKKLHHTYAPYKKGIIRHF 94
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+I+ID S + DF PS V ++ F+++F+D+NP+S + L+ ++ C +
Sbjct: 95 HIIIDSSASIELNDFLPSFRYHVTTKLNHFIKKFYDENPISILSLLIYRNN--RCENYIV 152
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
S + G G +G+ S+ N+L++ L++ +E+L++ +L T D
Sbjct: 153 LDRMSETENFFGVAG-TGEFSLMNSLNVSLDFLSRDDHI--KEILVVTGSLYTID----F 205
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIA 268
E ++ ++ K+ I L AE++ K++ Q+T G Y V ++ S L LE P +I
Sbjct: 206 EEMRAFRDIKVH--FIALRAEVYFFKNIAQKTHGKYYVPVEVS-DISLFLESFCMPNSIN 262
Query: 269 EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLV 328
+ +L+K+GFPQ A G + C + K GY CP C +VC LP +C IC QLV
Sbjct: 263 SSSALNLLKLGFPQ-ALTGDLVCACCFRCSK--KGYECPVCHTKVCNLPIKCPICKTQLV 319
Query: 329 SSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKC 388
+S L++S ++ +P+ F++ S C C G+ + C KC
Sbjct: 320 TSNILSQSLYYCYPLEDFEK------------SNGVCRVC------GGDGSD---QCKKC 358
Query: 389 KKHFCLECDIYIHESLHNCPGCE 411
+C C +IH L+ C C+
Sbjct: 359 MSVYCEGCCYFIHNDLYFCIYCD 381
>gi|403267800|ref|XP_003925995.1| PREDICTED: general transcription factor IIH subunit 2 [Saimiri
boliviensis boliviensis]
Length = 233
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 127/234 (54%), Gaps = 31/234 (13%)
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
++R+LY+V+D SR + D +P+R+ K IG++ K A
Sbjct: 1 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLK-----------------IGIIVTKSKRAEK 43
Query: 144 LTDLGGSPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
LT+L G+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+T
Sbjct: 44 LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTT 103
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHA 261
CDP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H
Sbjct: 104 CDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHV 163
Query: 262 PPPPAIAEFAIASLIKM-GFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
PPPA + SLI+M GF C E+K Y C C+ C
Sbjct: 164 SPPPASSSSE-CSLIRMAGFCY----------GCQGELKDQHVYVCAVCQNVFC 206
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 365 CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C+GCQ L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 183 CYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 223
>gi|301097433|ref|XP_002897811.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262106559|gb|EEY64611.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 164
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 102/167 (61%), Gaps = 13/167 (7%)
Query: 254 KELILEHAPPPPAIAEFA--IASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKA 311
K L+ P P +A A A+L++MGFPQR G++S+C+CH+ VGY CPRCK+
Sbjct: 2 KRLMTAFTFPSPTVATAASRFATLVEMGFPQRR-SGALSLCTCHQAFTT-VGYLCPRCKS 59
Query: 312 RVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE------ATPSRLNDLH-NISRST 364
+ C+LPT C++C L LVSSPHLARSYHHLFP+A F + AT + + + +
Sbjct: 60 KSCDLPTTCQVCNLPLVSSPHLARSYHHLFPVAKFAQHLLRSGATGEKGAKISPELVQKK 119
Query: 365 CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411
CFGC L G A C C+ FC ECD Y+H+SLHNCPGC
Sbjct: 120 CFGCLLLLGLDGEGAAY--ECATCQNVFCSECDTYVHDSLHNCPGCS 164
>gi|429962932|gb|ELA42476.1| hypothetical protein VICG_00575 [Vittaforma corneae ATCC 50505]
Length = 335
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 170/360 (47%), Gaps = 43/360 (11%)
Query: 60 YHAQYRR------RLRGRSLTVATARI---QKGLIRYLYIVIDLSRAAAEMDFRPSRMVV 110
+ ++RR RL R L T +K +IR+L + ID S + + D+ P+ +
Sbjct: 8 WTQEFRRSWEDNARLIRRPLPTYTKPFNTNKKNIIRHLLVCIDTSASIEKSDYVPTVRNI 67
Query: 111 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSI 170
++ + FV +F NPLS + +T + S E + K ++ +G SG+ S
Sbjct: 68 LSNTIPRFVSQFKISNPLSILSFLTCRSVFEK------YSREFNPKIMLNTVG-SGNFSF 120
Query: 171 QNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM 230
N L ++ S ++EVL++ S++ T D G + K+ I+ +VI + E+
Sbjct: 121 LNCLKSAIEMIRT--STYNKEVLVITSSIGTKDTGAYEQVFSDIKKYNIKVNVISICGEV 178
Query: 231 FICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSIS 290
+ K + + + G + V LD H E++L P E A + L+K+GFPQ +
Sbjct: 179 TLFKKISELSNGVFKVPLDSFHF-EILLHQFTEPLECLE-ATSCLVKLGFPQITSNSGL- 235
Query: 291 ICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEAT 350
C CH + + + Y CP CKA +C LP EC IC QLVS ++++SY+ ++P+ PF
Sbjct: 236 -CVCHLKFEHSL-YECPVCKAYICCLPCECPICSTQLVSPLNISKSYYFIYPLKPFISNE 293
Query: 351 PSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+ C C G A C +C+ H C +C+ ++HE L C C
Sbjct: 294 NGK-----------CRKC-------GRDAKF--LCEECQNHLCEKCNKFMHEDLGFCIFC 333
>gi|449488681|ref|XP_004158141.1| PREDICTED: serine/threonine-protein kinase TIO-like [Cucumis
sativus]
Length = 899
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 78/97 (80%), Gaps = 2/97 (2%)
Query: 1 MKNSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIY 60
M N E RLNGEA+EEDD+++ GL AWER+YADDRSWEALQEDESG LRPIDN AIY
Sbjct: 1 MNNGENRRLNGEADEEDDDDDA--NGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIY 58
Query: 61 HAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRA 97
HAQYRRRLR S TARIQKGLIRYLYIVID S+
Sbjct: 59 HAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKV 95
>gi|402469018|gb|EJW04086.1| hypothetical protein EDEG_01608 [Edhazardia aedis USNM 41457]
Length = 341
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 58/387 (14%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYL 88
+WE+ Y RSW++ G + +R + AT + GLIR+
Sbjct: 6 SWEKKYT--RSWQSTDVRNKG-----------NEPLKRHISKDD---ATKFKKLGLIRHF 49
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
IV+D S DF PS + ++E FV +F + NP+S + + + + + +L
Sbjct: 50 CIVVDHSTNIDSKDFLPSFRISTKNKLEKFVEKFSEDNPISTLTVCVNSNKTSESMQNLN 109
Query: 149 GSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM 208
+ G S++ AL+ + +L S +E+L++ +LS D +
Sbjct: 110 SPGD-------------GFFSLKKALETGYEVLKD--STNIKEMLLIIFSLSINDRNGLE 154
Query: 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIA 268
TI+ ++ I+ ++I L AE+ I K +C TGG + V LD++H + ++ P
Sbjct: 155 TTIENVVKANIKVNIINLCAELKILKTVCDRTGGKFCVPLDDNHYETSLMSFLTPTSVPN 214
Query: 269 EFAIASLIKMGFP--QRAGEGSISICSCHKEV--KIGVGYTCPRCKARVCELPTECRICG 324
+ SLI++GFP + + + + C CH ++ Y+C +C A +C LP EC IC
Sbjct: 215 --STISLIQIGFPKVEVSDKNTPFCCVCHLKIIRPPFETYSCVKCSAILCSLPVECPICD 272
Query: 325 LQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384
SS L ++ HH + + F P S C C N G C+
Sbjct: 273 TLNASSIGLCKNIHHFYVLEDF---VP---------SDGFCVVC--------NDKG-CMQ 311
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCE 411
C KC FC +C+ ++H++++ C CE
Sbjct: 312 CQKCLNVFCRDCNSFLHDNINFCFYCE 338
>gi|321447765|gb|EFX61168.1| hypothetical protein DAPPUDRAFT_340521 [Daphnia pulex]
Length = 167
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 23/182 (12%)
Query: 159 MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 218
M C+G++S+QN+ + L +P++ REVL L L + I+ KE+
Sbjct: 7 MKDTSCNGETSLQNSFERAMCGLKNMPAHSSREVLTLLVILVIYK-----KKIKSFKENN 61
Query: 219 IRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKM 278
IR S+IGL+AE+ IC+ + + TGGTY+V LD+ + KE ++ + P A+A ASL+KM
Sbjct: 62 IRVSIIGLAAEVRICQEIAKRTGGTYNVLLDDHYLKETLILNQVQPLAVAGTMEASLVKM 121
Query: 279 GFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYH 338
GF + GY CP+ +R CELP EC+ CGL LVS+PHLARSYH
Sbjct: 122 GFSNNS------------------GYNCPQSGSRYCELPVECKQCGLTLVSAPHLARSYH 163
Query: 339 HL 340
L
Sbjct: 164 LL 165
>gi|387592763|gb|EIJ87787.1| hypothetical protein NEQG_01859 [Nematocida parisii ERTm3]
gi|387595388|gb|EIJ93012.1| hypothetical protein NEPG_01967 [Nematocida parisii ERTm1]
Length = 366
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 181/392 (46%), Gaps = 53/392 (13%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE ++ + +WE SG I+ RR T +Q+G++R +
Sbjct: 8 WEEAFQN--TWE----KNSG------TDDIFALNVNRR---------TENLQRGIVRRIL 46
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D+S + E DF PSR V K V F REF + NPLS +GL V G++ ++ +
Sbjct: 47 LVLDMSHSIEERDFLPSRKYYVKKGVMKFFREFIESNPLSTVGLAVVCGGMSYLVSSI-L 105
Query: 150 SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC--DPGDI 207
E I+ + +G+ S+ +A + ++ + +EV+ + S + P +
Sbjct: 106 CEEEEIEMCFSQNEGAGNFSLGSAFETINEFFHGCSFL--KEVVFIISGFTFVGSSPFIL 163
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVA-LDESHSKELILEHAPPPPA 266
T+ I I ++ EM I + L +E+GG + + E S L L PPP +
Sbjct: 164 KSTLIN---KGIIMHTIHMAGEMEILRKLSEESGGVFGIVNCPEDLSTLLGLICIPPPHS 220
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQ 326
+ A S++K+GFP E +IC+CH ++K GY CP C +VC++P C +C
Sbjct: 221 AS--ARLSMLKIGFPSPIHEN--TICACHLDLK-EWGYECPFCTTKVCKVPGVCPVCENI 275
Query: 327 LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACP 386
L + HL ++ H + ++ P + + + TC GC ++ + +CP
Sbjct: 276 LSAPVHLLKALH-------WSDSAPIYVAAI----KGTCRGCFENNIQLH-------SCP 317
Query: 387 KCKKHFCLECDIYIHESLHNCPGCESLRQSNP 418
CK CL+C +I + L+ C C S P
Sbjct: 318 GCKNSLCLDCTRFIRQELNFCIFCPGAVSSVP 349
>gi|378754973|gb|EHY65001.1| hypothetical protein NERG_02057 [Nematocida sp. 1 ERTm2]
Length = 357
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 171/394 (43%), Gaps = 73/394 (18%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE ++ + +WE + + AI+ RR T +Q+G++R +
Sbjct: 8 WEEAFQN--TWEKHGKGD----------AIFALNVTRR---------TENMQRGIVRRVL 46
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D+S + E DF PSR V K V F REF + NPLS +GL V G++ ++ +
Sbjct: 47 LVLDMSSSIEERDFLPSRKYYVKKGVIKFFREFTESNPLSTVGLAVVCGGMSYLVSSI-L 105
Query: 150 SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSAL---------- 199
E I+ + G S+ +A + V +EV+ + S
Sbjct: 106 CEEDEIEMCFAQNEGQGGFSLGSAFETVKEFFQGCSFL--KEVIFIVSGFTFVGRSPFIL 163
Query: 200 --STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVA-LDESHSKEL 256
S + G IM TI ++ EM I + + +E GG + + E S L
Sbjct: 164 KNSLINKGIIMHTIH-------------MAGEMEILRKISEECGGIFGIVNCPEDLSTLL 210
Query: 257 ILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCEL 316
L PPP + + A S++K+GFP E +IC+CH E+K GY CP C +VC++
Sbjct: 211 GLICIPPPHSAS--ARLSMLKIGFPSSIQEN--TICACHLELK-EWGYECPFCTTKVCKV 265
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P C IC L + HL ++ H + ++ P + + C GC + +
Sbjct: 266 PGVCPICENILSAPVHLLKALH-------WSDSAPIYAPE----GKGRCRGCSEENIQLN 314
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
CP CK C++C +I + L+ C C
Sbjct: 315 -------GCPGCKSRLCMDCTGFIRQELNFCIFC 341
>gi|145532284|ref|XP_001451903.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419569|emb|CAK84506.1| unnamed protein product [Paramecium tetraurelia]
Length = 373
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 163/350 (46%), Gaps = 51/350 (14%)
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQV----------EAFVREFFDQNPLSQIGL 133
++R L I+ID ++++ DF+PSR+ V + + ++F+ +F + NPLSQIG+
Sbjct: 51 IMRNLLIIIDTTKSSKVSDFKPSRLAVALQFLPVKKHTIIHNQSFIEQFLEGNPLSQIGI 110
Query: 134 VTVKDGVANCLTDLGGSPESHIKALMGKL------GCSGDSSIQNALDLVHGLLNQIPSY 187
++ + D S +IK + + G S + +Q AL + + +
Sbjct: 111 AVAEEYKCKTILDFTSSC-VNIKQYLSTIHSINEAGFSMAACLQTALHV----FSSTQLH 165
Query: 188 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVA 247
+L + ++ + D D+ E +KC+ + I+ ++I + + + Q T G Y
Sbjct: 166 AQSSILFVTTSTYSDDKLDLNEWSEKCQSAAIQINMISFAGAIHQLIKITQATDGQYLCP 225
Query: 248 LDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCP 307
++E + I + P + I L+K+GFPQ+ ++C CH E+ I Y CP
Sbjct: 226 INEFQFSQEIQKFISPQESKNHKMITQLVKIGFPQKFIVSQPTLCQCHLEI-IYNFYKCP 284
Query: 308 RCKARVCELPTECRICGLQLVSSPHLARS--YHHL--FPIAPFDEATPSRLND-LHNISR 362
C ++VC P C IC +V + RS Y+ L F I +ND L +I
Sbjct: 285 VCYSKVCSPPLLCPICSTWIVLPHQILRSDGYNTLGVFEI----------INDGLDHI-- 332
Query: 363 STCFGCQQ--SLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C GC + S++ S C +CK FCL+CD+ IH CPGC
Sbjct: 333 --CQGCLEPTSVIHS--------TCERCKNFFCLDCDVLIHSKFKVCPGC 372
>gi|402580964|gb|EJW74913.1| hypothetical protein WUBG_14179, partial [Wuchereria bancrofti]
Length = 144
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Query: 215 KESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIAS 274
K IRCSVI LSAE+F+ K LC T G + V LD +H + ++ EHA PP + A +S
Sbjct: 3 KRYHIRCSVISLSAEIFVFKKLCSITSGRHDVVLDSTHFEVILSEHAIPP-VCSRNAESS 61
Query: 275 LIKMGFPQRAGEGSISICSCHK-EVKI--GVGYTCPRCKARVCELPTECRICGLQLVSSP 331
+++MGFP S C CH+ EV+ G G+ CP+C AR C LP ECRIC L L+S+P
Sbjct: 62 VVRMGFPAHESIDCPSFCLCHQSEVRPPGGRGFFCPQCGARYCSLPVECRICKLTLISAP 121
Query: 332 HLARSYHHLFPIAPFDE 348
LARS H+L P+ F+E
Sbjct: 122 QLARSLHNLLPLPAFEE 138
>gi|85000913|ref|XP_955175.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303321|emb|CAI75699.1| hypothetical protein, conserved [Theileria annulata]
Length = 319
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 145/300 (48%), Gaps = 45/300 (15%)
Query: 29 AWERSYADDRSWEALQEDES--GFLRPIDNSAIYH---AQYRRRLRGRSLTVATARIQKG 83
+WE D+SWE L E + F++P + IY Y L+ ++ + R G
Sbjct: 32 SWELDV--DKSWEQLIEKDGILQFIKP--QTKIYQEFDIDYNTNLKQHNVDIIYKR---G 84
Query: 84 LIRY------LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVK 137
+IR+ + I+ D+S EMDF+P R+ ++ F+ + P++Q+G++ ++
Sbjct: 85 IIRFVTVFWSIMILFDMSEQMHEMDFKPDRLYCAFNSLKEFMNVLYGSGPITQVGIIVMR 144
Query: 138 DGVANCLTDLGGSPESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLIL 195
+ + N +T G +P+ ++ L L G G SS+QN L++ ++ ++P Y RE+LI+
Sbjct: 145 NKICNVITQFGTNPDEQMELLSNILKDGPEGSSSLQNGLEMCLKIMCELPYYMTREILII 204
Query: 196 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKE 255
+ + T DPG+I+ T+ K K++ I + I LS E++I K G + V+ +
Sbjct: 205 FGSNKTLDPGNILITLDKLKQNFITVNCISLSPELYILK-----GCGIFMVSPPDISRA- 258
Query: 256 LILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCE 315
H PP + + E +I+ C+ + I +GY C C+ CE
Sbjct: 259 --FHHLIPPKSFHKI---------------ERNINCSGCN--LNIEIGYECQNCQGIFCE 299
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 323 CGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS-TCFGCQQSLLASGNKAGL 381
CG+ +VS P ++R++HHL P F H I R+ C GC ++ +
Sbjct: 245 CGIFMVSPPDISRAFHHLIPPKSF-----------HKIERNINCSGCNLNI-------EI 286
Query: 382 CVACPKCKKHFCLECDIYIHESLHNCPGC 410
C C+ FC CD YIH+ LH CP C
Sbjct: 287 GYECQNCQGIFCEYCDKYIHQDLHQCPIC 315
>gi|56786210|gb|AAW29208.1| Ssl1 [Drosophila yakuba]
gi|56786212|gb|AAW29209.1| Ssl1 [Drosophila yakuba]
gi|56786214|gb|AAW29210.1| Ssl1 [Drosophila yakuba]
gi|56786216|gb|AAW29211.1| Ssl1 [Drosophila yakuba]
gi|56786226|gb|AAW29216.1| Ssl1 [Drosophila yakuba]
gi|56786228|gb|AAW29217.1| Ssl1 [Drosophila yakuba]
gi|56786230|gb|AAW29218.1| Ssl1 [Drosophila yakuba]
gi|56786232|gb|AAW29219.1| Ssl1 [Drosophila yakuba]
Length = 166
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 12/165 (7%)
Query: 159 MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 218
+ + + + S+QN LDL L +PS+ RE++I+ +L+TCDP DI TI + K+
Sbjct: 2 LANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINITIDELKKEG 61
Query: 219 IRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKM 278
IRCSVI LSAE+ + ++L Q+T GT+ LD++H ++ ++ PPPA A+ SLI+M
Sbjct: 62 IRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA-AKTQHNSLIRM 120
Query: 279 GFPQRAGE-----GSISICSCHKE------VKIGVGYTCPRCKAR 312
GFP E +S+C CH E G+ CP+C ++
Sbjct: 121 GFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK 165
>gi|56786218|gb|AAW29212.1| Ssl1 [Drosophila santomea]
gi|56786220|gb|AAW29213.1| Ssl1 [Drosophila santomea]
gi|56786222|gb|AAW29214.1| Ssl1 [Drosophila santomea]
gi|56786224|gb|AAW29215.1| Ssl1 [Drosophila santomea]
gi|56786234|gb|AAW29220.1| Ssl1 [Drosophila santomea]
gi|56786236|gb|AAW29221.1| Ssl1 [Drosophila santomea]
gi|56786238|gb|AAW29222.1| Ssl1 [Drosophila santomea]
gi|56786240|gb|AAW29223.1| Ssl1 [Drosophila santomea]
Length = 166
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 12/165 (7%)
Query: 159 MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 218
+ + + + S+QN LDL L +PS+ RE++I+ +L+TCDP DI TI K+
Sbjct: 2 LANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINITIDDLKKEG 61
Query: 219 IRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKM 278
IRCSVI LSAE+ + ++L Q+T GT+ LD++H ++ ++ PPPA A+ SLI+M
Sbjct: 62 IRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA-AKTQHNSLIRM 120
Query: 279 GFPQRAGE-----GSISICSCHKE------VKIGVGYTCPRCKAR 312
GFP E +S+C CH E G+ CP+C ++
Sbjct: 121 GFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK 165
>gi|269859684|ref|XP_002649566.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066929|gb|EED44398.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 346
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 161/331 (48%), Gaps = 26/331 (7%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
+K +IR L +ID+S A + ++ P+ + ++ F F NPLS+I T V
Sbjct: 39 RKSIIRNLVFIIDMSEAIEKTEYLPTIRSFILPELSDFSDNFVKLNPLSKITFTTFNYKV 98
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALS 200
N + K L+ G +G S + L ++G+ + +E L++ S++
Sbjct: 99 LN-------TAFKFDKNLLSSYG-TGHFSFTSCLSYINGITDT--KITSKECLLIISSVG 148
Query: 201 TCDPG-DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILE 259
+ + + +++ + KI+ ++I + E+ + K +C TGG Y V ++ K ++ +
Sbjct: 149 VINEEINFDKVMKEIIQKKIKINIISICGEVTLLKKVCISTGGKYVVPINSFQFKSILSD 208
Query: 260 HAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTE 319
PP ++ SLI++GFP+ + C CH + V + CPRCK VC +P+
Sbjct: 209 FLYPPESLD--LKCSLIEVGFPKNIYTQHL--CVCHLNL-CSVLFECPRCKGLVCTIPST 263
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKA 379
C IC L+L+SS + + + + PF + S+ +L ++ ++ C+GC++ + S
Sbjct: 264 CPICKLELISSIDICDLICYNYYLEPFIKIATSK--ELSSLEKNKCYGCEKLEVIS---- 317
Query: 380 GLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C KC FC CD +H ++ CP C
Sbjct: 318 ----VCNKCLSPFCYNCDAKLHNVINFCPFC 344
>gi|95007103|emb|CAJ20323.1| ssl1-like protein [Toxoplasma gondii RH]
Length = 647
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 166/421 (39%), Gaps = 62/421 (14%)
Query: 20 EENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATAR 79
EE+L G AWE +RSW+ L E GF+ +A + RR R + +
Sbjct: 215 EEDLYGQY-AWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTRRVDRRQQ---HEPQ 268
Query: 80 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 139
I+KG+IR L ++ID+S A E DFRP R+ V + E F+ F QNPL+Q+ V +
Sbjct: 269 IKKGIIRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQNPLAQLAQVALIGP 328
Query: 140 VANCLTDLGGSPESHIKALMGKLGC---------------------------SGDSSIQN 172
A L G + G +G S+ N
Sbjct: 329 SAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKRKHPGVGTGVPSLNN 388
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
L L LL +P Y REVL+L+ +L TCD G I ETI K+S I C+VI L+AE+ +
Sbjct: 389 GLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSNICCNVICLAAELHV 448
Query: 233 CKHLCQETGGTYSVALDESHSKELILEHAPPPPA---IAEFAIASLIKMGFPQRAGEGSI 289
K G S S HA PA A++ + F + G
Sbjct: 449 LKFSESLPGNGRSTRCASSPRASARSSHATHSPASLVCQHAALSHPHGISFAEVDEHGGP 508
Query: 290 SICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEA 349
S + P + P + L+S+P LA + + P D
Sbjct: 509 LQLSPTPHFLL---LRLPPVRREALHHPQPLSM----LLSAPRLAGRH---LAVVPADAP 558
Query: 350 TPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409
RL C C L G + CP C + FC +CDIY HE L C
Sbjct: 559 EAKRL----------CACCTTQLDRGGAQ------CPDCGEIFCHDCDIYSHEQLRQCAF 602
Query: 410 C 410
C
Sbjct: 603 C 603
>gi|269860338|ref|XP_002649891.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066731|gb|EED44204.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 346
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 161/331 (48%), Gaps = 26/331 (7%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
+K +IR L +ID+S A + ++ P+ + ++ F F NPLS+I V
Sbjct: 39 RKSIIRNLVFIIDMSEAIEKTEYLPTIRSFILPELSDFSDNFVKLNPLSKITFTIFNYKV 98
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALS 200
N + K L+ G +G S + L ++G+ + +E L++ S++
Sbjct: 99 LN-------TAFKFDKNLLSSYG-TGHFSFTSCLSYINGITDT--KITSKECLLIISSVG 148
Query: 201 TCDPG-DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILE 259
+ + + +++ + KI+ ++I + E+ + K +C TGG Y V ++ K ++ +
Sbjct: 149 VINKEINFDKVMKEIIQKKIKINIISICGEVTLLKKVCISTGGKYVVPINSFQFKSILSD 208
Query: 260 HAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTE 319
PP ++ SLI++GFP+ + C+CH + V + CP+CK VC +P+
Sbjct: 209 FLYPPESLD--LKCSLIEVGFPKNIYTQHL--CACHLNL-CSVLFECPKCKGLVCTIPSA 263
Query: 320 CRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKA 379
C IC L+L+SS + + + + PF + S+ +L ++ ++ C+GC++ + S
Sbjct: 264 CPICKLELISSIDICDLICYNYHLEPFIKIATSK--ELSSLEKNKCYGCEKLEVIS---- 317
Query: 380 GLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C KC FC CD +H ++ CP C
Sbjct: 318 ----VCNKCLSPFCYNCDAKLHNVINFCPFC 344
>gi|383141961|gb|AFG52334.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141967|gb|AFG52337.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141975|gb|AFG52341.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141977|gb|AFG52342.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141987|gb|AFG52347.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 60/75 (80%), Gaps = 3/75 (4%)
Query: 298 VKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDL 357
VK+G GYTCPRCKARVCELPTEC ICGL LVSSPHLARSYHHLFP+ PF+E + ND
Sbjct: 1 VKVGGGYTCPRCKARVCELPTECHICGLTLVSSPHLARSYHHLFPVTPFEEVLRTSSND- 59
Query: 358 HNISRSTCFGCQQSL 372
+ R TCFGCQQ L
Sbjct: 60 -RLPR-TCFGCQQFL 72
>gi|1737212|gb|AAC52046.1| basic transcription factor 2 p44, partial [Homo sapiens]
Length = 143
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 68/108 (62%), Gaps = 10/108 (9%)
Query: 303 GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISR 362
GY CP+C+A+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E N
Sbjct: 36 GYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GE 90
Query: 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C+GCQ L K C C+ FC++CD+++H+SLH CPGC
Sbjct: 91 RFCYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 133
>gi|30584663|gb|AAP36584.1| Homo sapiens general transcription factor IIH, polypeptide 2, 44kDa
[synthetic construct]
Length = 166
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 10/157 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQI 184
+P HI +L + C G+ S+ N+L + L +
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKLV 159
>gi|13529149|gb|AAH05345.1| GTF2H2 protein [Homo sapiens]
gi|30582385|gb|AAP35419.1| general transcription factor IIH, polypeptide 2, 44kDa [Homo
sapiens]
Length = 165
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 10/157 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQI 184
+P HI +L + C G+ S+ N+L + L +
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKLV 159
>gi|26347121|dbj|BAC37209.1| unnamed protein product [Mus musculus]
Length = 201
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 10/155 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLN 182
+P HI +L + C G+ S+ N+L + L
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLK 157
>gi|383141959|gb|AFG52333.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141963|gb|AFG52335.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141965|gb|AFG52336.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141969|gb|AFG52338.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141971|gb|AFG52339.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141973|gb|AFG52340.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141979|gb|AFG52343.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141981|gb|AFG52344.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141983|gb|AFG52345.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141985|gb|AFG52346.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141989|gb|AFG52348.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141991|gb|AFG52349.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Query: 298 VKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDL 357
VK+G GYTCPRCKAR CELPTEC ICGL LVSSPHLARSYHHLFP+ PF+E + ND
Sbjct: 1 VKVGGGYTCPRCKARACELPTECHICGLTLVSSPHLARSYHHLFPVTPFEEVLRTSSND- 59
Query: 358 HNISRSTCFGCQQSL 372
+ R TCFGCQQ L
Sbjct: 60 -RLPR-TCFGCQQFL 72
>gi|361068769|gb|AEW08696.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Query: 298 VKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDL 357
VK+G GYTCPRCKA VCELPTEC ICGL LVSSPHLARSYHHLFP+ PF++ + ND
Sbjct: 1 VKVGGGYTCPRCKAHVCELPTECHICGLTLVSSPHLARSYHHLFPVTPFEKVLRTSSND- 59
Query: 358 HNISRSTCFGCQQSL 372
+ R TCFGCQQ L
Sbjct: 60 -RLPR-TCFGCQQFL 72
>gi|426384438|ref|XP_004058775.1| PREDICTED: general transcription factor IIH subunit 2-like [Gorilla
gorilla gorilla]
Length = 260
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Query: 150 SPESHIKALMGK--LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 96 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 155
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEH 260
+ I+ K +KIR SVIGLSAE+ +C L +ETGG Y V LDESH KEL+ H
Sbjct: 156 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGIYHVILDESHYKELLTHH 208
>gi|147803583|emb|CAN77666.1| hypothetical protein VITISV_035971 [Vitis vinifera]
Length = 328
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 59/68 (86%)
Query: 144 LTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
+ DLGGS +SH+KALMGKL CSGDSS+QNAL+LV G LN IPSYG+REVLILYSALS CD
Sbjct: 114 MQDLGGSIDSHVKALMGKLECSGDSSLQNALNLVRGYLNLIPSYGYREVLILYSALSACD 173
Query: 204 PGDIMETI 211
GDI+ T+
Sbjct: 174 TGDIIPTL 181
>gi|294942110|ref|XP_002783381.1| TFIIH basal transcription factor complex p44 subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239895836|gb|EER15177.1| TFIIH basal transcription factor complex p44 subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 188
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 222 SVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFP 281
SVI LS E++ + + + TGGT+SVA H K L+ +H PP ++ S IKMGFP
Sbjct: 8 SVISLSPELYALRKVVEMTGGTFSVATSPIHFKRLMQKHLTPPNWVSS---PSYIKMGFP 64
Query: 282 -QRAGEGSISI-----CSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLAR 335
+RA +G+ + C CH ++ Y CP+C + VCE+P C +C L LV L +
Sbjct: 65 VRRACDGNHTADPPIKCMCHNRLQKTFVYICPQCHSPVCEIPVNCPVCRLPLVDDDALKK 124
Query: 336 SYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLE 395
+ H++ + + + L + TC C G + C +C C E
Sbjct: 125 HHRHIYSMPTY-----TLLPTVDYPKSYTCQFCGTDFTEGGAR------CDQCLSDVCYE 173
Query: 396 CDIYIHESLHNCPGC 410
CD++ H L +CPGC
Sbjct: 174 CDMFAHNKLRHCPGC 188
>gi|70917739|ref|XP_732957.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504309|emb|CAH83594.1| hypothetical protein PC300587.00.0 [Plasmodium chabaudi chabaudi]
Length = 161
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 104 RPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--K 161
+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L + + + +L+ K
Sbjct: 1 KPNRITVIFECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTSNIDDVLNSLVKEQK 60
Query: 162 LGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 221
G G S+Q L++ H LL +P YG +E+LI+Y ++ TCD +I++ + ++ +
Sbjct: 61 EGLQGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNILKYLDLLIKNNMYV 120
Query: 222 SVIGLSAEMFICKHLCQETGGTYSV 246
+ I ++ EM I KH+C++T G Y +
Sbjct: 121 NCISIAPEMHILKHICEKTHGIYKI 145
>gi|736404|gb|AAA64502.1| BTF2p44 [Homo sapiens]
Length = 130
Score = 100 bits (250), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKA 157
+P I +
Sbjct: 123 NPRKXISS 130
>gi|154318002|ref|XP_001558320.1| hypothetical protein BC1G_02984 [Botryotinia fuckeliana B05.10]
Length = 211
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 100/176 (56%), Gaps = 17/176 (9%)
Query: 19 EEENLNGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAI---YHAQYRRRLRGRSLT 74
+E+ NGG + ++ D RSW+ + E G + NS + A R+RL
Sbjct: 44 KEKAANGGGNRRKAAWEDIQRSWDTVVEGADGSI----NSTVEGLREANKRKRL-----L 94
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
T +Q+G+IR+ +++DLS A E D RP+R ++ + FV E+F+QNP+SQ+G++
Sbjct: 95 RDTTPLQRGIIRHFILILDLSFAMTEKDMRPTRYLLTIRYASEFVTEYFEQNPISQLGII 154
Query: 135 TVKDGVANCLTDLGGSPESHI---KALMGKLGCSGDSSIQNALDLVHGLLNQIPSY 187
++DG+A ++D+ G+P HI KAL G G+ S+QNAL++ L PS+
Sbjct: 155 GMRDGIAVRISDMSGNPTEHIERLKALRVDQG-QGNPSLQNALEMSRAALFHAPSH 209
>gi|407425981|gb|EKF39551.1| DNA repair and transcription factor protein [Trypanosoma cruzi
marinkellei]
Length = 356
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 151/362 (41%), Gaps = 57/362 (15%)
Query: 90 IVIDLSRAA-AEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++D S A + D+ P+R++ + Q+ FV + D NPL+ +G+VT++DGVA+ L
Sbjct: 6 LLLDGSEAMNSSADYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCT 65
Query: 149 GSPESHIKALMGK---LGCSGDSSIQNALDLVHGLLNQI-----------PSYGHRE--- 191
+ I+ L K G SG S++N L L + P G +E
Sbjct: 66 TNASDIIQTLEVKYFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPRAGGKEARE 125
Query: 192 -------VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTY 244
+L++ S+++ DP D+ I+ + +IR V+ + + + TGGT
Sbjct: 126 EPTARLRILLVSSSVTIIDPHDVFGVIKMLAKLRIRVDVVSFCGAVHVFEEAAVSTGGTL 185
Query: 245 SVALDESHSKELILEHAPPPPA-IAEFAIASLIKMGFP-------QRAGEGSISICSCHK 296
++ H E++ A P I ++I++GFP GEG
Sbjct: 186 YTPMNYDHLTEVLGRLASPDKRHICPEERPTMIRIGFPVYIECEDSEGGEGG-------- 237
Query: 297 EVKIGVGYT-CPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLN 355
Y CP+C +P+ C +C L L S+P + ++ + P E L+
Sbjct: 238 ----STSYVACPQCALMQTSIPSTCPLCKLLLCSAPLIHNTFIANNELCPVSENV---LD 290
Query: 356 DLHNISRST-------CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCP 408
+ T C CQ ++ KA L C C C+ C+ Y+ E + CP
Sbjct: 291 AFEGAEKPTEDYLNERCSLCQYGMMGEDGKA-LVWRCNSCHCLRCVSCEKYVRERIGLCP 349
Query: 409 GC 410
C
Sbjct: 350 TC 351
>gi|71664710|ref|XP_819333.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70884629|gb|EAN97482.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 356
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 159/363 (43%), Gaps = 59/363 (16%)
Query: 90 IVIDLSRAA-AEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++D S A + D+ P+R++ + Q+ FV + D NPL+ +G+VT++DGVA+ L
Sbjct: 6 LLLDGSEAMNSSADYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCT 65
Query: 149 GSPESHIKALMGK---LGCSGDSSIQNALDLVHGLLNQI-----------PSYGHRE--- 191
+ I+ L K G SG S++N L L + P G +E
Sbjct: 66 TNASDIIQTLEVKYFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPHAGGKEARE 125
Query: 192 -------VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTY 244
+L++ S+++ DP D+ I+ + ++R VI + + TGGT
Sbjct: 126 EPTARLRILLVSSSVTVIDPHDVFGVIKMMAKLRVRVDVISFCGAVHVFGEAAVSTGGTL 185
Query: 245 SVALDESHSKELI-LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVG 303
++ H E++ L +P + + ++I++GFP +C KE + G G
Sbjct: 186 YTPMNYDHLTEVLGLLASPDKHHVCQEERPAMIRIGFPVYI--------NC-KEPEGGEG 236
Query: 304 -----YTCPRCKARVCELPTECRICGLQLVSSPHLARSY---HHLFPIAP--------FD 347
CP+C +P+ C +C L L S+P + ++ + L P++ D
Sbjct: 237 GSTNYVACPQCALVQTSIPSTCPLCKLLLCSAPLIHNTFIAHNELCPVSENVVDAFEGTD 296
Query: 348 EATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNC 407
+ T LN+ C CQ ++ +A L C C C+ C+ Y+ E + C
Sbjct: 297 KPTEDYLNE-------RCSLCQYGMMGEDGRA-LVWRCNSCHCLRCVSCEKYVRERIGLC 348
Query: 408 PGC 410
P C
Sbjct: 349 PTC 351
>gi|407843613|gb|EKG01508.1| DNA repair and transcription factor protein [Trypanosoma cruzi]
Length = 397
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 154/366 (42%), Gaps = 65/366 (17%)
Query: 90 IVIDLSRAA-AEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++D S A + D+ P+R++ + Q+ FV + D NPL+ +G+VT++DGVA+ L
Sbjct: 47 LLLDGSEAMNSSADYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCT 106
Query: 149 GSPESHIKALMGK---LGCSGDSSIQNALDLVHGLLNQI-----------PSYGHRE--- 191
+ I+ L K G SG S++N L L + P G +E
Sbjct: 107 TNASDIIQTLEVKYFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPRAGGKEARE 166
Query: 192 -------VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTY 244
+L++ S+++ DP D+ I+ + +R VI + + TGGT
Sbjct: 167 EPTARLRILLVSSSVTVIDPHDVFGVIKMMAKLHVRVDVISFCGAVHVFGEAAVSTGGTL 226
Query: 245 SVALDESHSKELILEHAPPPPA-IAEFAIASLIKMGFP-------QRAGEGSISICSCHK 296
++ H E++ A P + + ++I++GFP GEG
Sbjct: 227 YTPMNYDHLTEVLGRLASPDKRHVCQEERPAMIRIGFPVYIDCKEPEGGEGG-------- 278
Query: 297 EVKIGVGYT-CPRCKARVCELPTECRICGLQLVSSPHLARSY---HHLFPIAP------- 345
Y CP+C +P+ C +C L L S+P + ++ + L P++
Sbjct: 279 ----STNYVACPQCALVQTSIPSTCPLCKLLLCSAPLIHNTFIAHNELCPVSENVVDAFE 334
Query: 346 -FDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESL 404
D+ T LN+ C CQ ++ +A L C C C+ C+ Y+ E +
Sbjct: 335 GADKPTEDYLNE-------RCSLCQYGMMGEDGRA-LVWRCNSCHCLRCVSCEKYVRERI 386
Query: 405 HNCPGC 410
CP C
Sbjct: 387 GLCPTC 392
>gi|115432926|ref|XP_001216600.1| hypothetical protein ATEG_07979 [Aspergillus terreus NIH2624]
gi|114189452|gb|EAU31152.1| hypothetical protein ATEG_07979 [Aspergillus terreus NIH2624]
Length = 202
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 13/169 (7%)
Query: 25 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGL 84
GG E WE S R+WE L E G + + + +R LR T +Q+G+
Sbjct: 42 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGI 90
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
IR+L +++DLS + AE D RP+R ++ + + FVREFF+QNP+SQ+G++ ++DG+A +
Sbjct: 91 IRHLILILDLSLSMAEKDLRPTRYLLTLRYAQEFVREFFEQNPISQLGVLGLRDGLAVRI 150
Query: 145 TDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHRE 191
+D+ G+P HI A+ + G S+QN L++ G L + + HRE
Sbjct: 151 SDMSGNPTEHISAIQALRDQDPKGLPSLQNGLEMARGALLYVLTLNHRE 199
>gi|426384446|ref|XP_004058778.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Gorilla gorilla gorilla]
Length = 119
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 15/129 (11%)
Query: 244 YSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVG 303
Y V LDESH KEL+ H PPPA + SLI+MG + +G+ + +G G
Sbjct: 2 YHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMG---KHLDGNTE-----PGLTLG-G 51
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRS 363
Y CP+C+A+ CELP EC+ICGL LVS+PHLARSYHHLFP+ F E N
Sbjct: 52 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GER 106
Query: 364 TCFGCQQSL 372
C+GCQ L
Sbjct: 107 FCYGCQGEL 115
>gi|149059194|gb|EDM10201.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 159
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSD 122
Query: 150 S 150
+
Sbjct: 123 T 123
>gi|222871523|gb|EEF08654.1| predicted protein [Populus trichocarpa]
Length = 104
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Query: 184 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT 243
+P + REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L +ETGGT
Sbjct: 1 MPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGT 60
Query: 244 YSVALDESHSKELILEH 260
Y V LDESH KEL+ H
Sbjct: 61 YHVILDESHYKELLTHH 77
>gi|148668488|gb|EDL00807.1| general transcription factor II H, polypeptide 2, isoform CRA_b
[Mus musculus]
Length = 159
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSD 122
Query: 150 S 150
+
Sbjct: 123 T 123
>gi|56753383|gb|AAW24895.1| SJCHGC07056 protein [Schistosoma japonicum]
Length = 150
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 70/134 (52%), Gaps = 28/134 (20%)
Query: 304 YTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLND--LHNIS 361
Y CPRC A CELP EC +CGL LV++PHLAR+YHHLFP+ F+ + ++ L N
Sbjct: 19 YACPRCHAAYCELPVECNVCGLTLVAAPHLARAYHHLFPLDLFEPVVDNNSSEKSLVNED 78
Query: 362 RS----------------------TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399
+S C GC +++ G CPKC FC CD
Sbjct: 79 KSKETINSSSDDNNNNNNNNNQLRVCTGC--NVIIPSRIPGY--QCPKCTFIFCHSCDAI 134
Query: 400 IHESLHNCPGCESL 413
+H+S+H+CPGC +L
Sbjct: 135 LHDSIHSCPGCLTL 148
>gi|342182931|emb|CCC92411.1| putative DNA repair and transcription factor protein [Trypanosoma
congolense IL3000]
Length = 354
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 151/358 (42%), Gaps = 50/358 (13%)
Query: 90 IVIDLSRAA-AEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+++D S A + D+ P+R++ + Q+ AFV F D NPL+ +G+V ++DGVA+ L
Sbjct: 6 LLLDGSEAVNSSSDYLPTRLLALRPQLNAFVHAFLDDNPLASLGVVVMRDGVAHRLISCT 65
Query: 149 GSPESHIKALMGK---LGCSGDSSIQNALDLVHGLLNQIPSYGHR--------------- 190
+ AL K G SG S++N L + L + R
Sbjct: 66 ANATDIAHALELKYFLFGGSGAMSLENGLRMALSELVDLKRIAKRVRREAEMPGPNEEGL 125
Query: 191 --------EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGG 242
V+++ S+++ DP D+ + + ++R V+ + + TGG
Sbjct: 126 RPDHATQLRVILVASSVTLVDPHDVFRVQKVVAQLRVRVDVVSFCGAVHALQEAALTTGG 185
Query: 243 TYSVALDESHSKELILEHAPPPPAIAEFAI--ASLIKMGFPQRA-GEGSISICSCHKEVK 299
++ H ++ + A P ++I++GFP+ EG KE +
Sbjct: 186 QLYTPMNYEHLTGILQKLAAPERGSTHPLTERPAMIQIGFPRYVEAEG--------KEKR 237
Query: 300 IGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSY-HHLFPIAPFD-----EATPSR 353
CP+C +P+ C +C L L S+P + S+ PIAP + PS
Sbjct: 238 Y---MGCPQCGLIQTSVPSTCPLCKLLLCSAPLIHTSFITKNEPIAPSQKVESKQKAPSG 294
Query: 354 LND-LHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
+D ++ S C C++ L G+ + C C + C C+ Y+ E + CP C
Sbjct: 295 ESDEAPSVHCSLC--CRRKPLGVGDGGMVFWRCSCCLRERCDVCEAYVKEGIGLCPTC 350
>gi|312076198|ref|XP_003140754.1| hypothetical protein LOAG_05169 [Loa loa]
Length = 127
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 11/135 (8%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+DDE E WE YAD + + L EDESG + I + ++RL R
Sbjct: 3 DDDEPEGY-----TWEVDYADGLNIRDVLHEDESGSIEKSVAKLILDTKRKKRLNNRP-- 55
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
A+++ G++RYLY+VID S + A+ PSR+ V K + F+ +F +QNP+SQ+G+V
Sbjct: 56 ---AKVRLGIMRYLYLVIDCSFSMADKSIPPSRLAVTIKALNQFLDKFSEQNPISQVGIV 112
Query: 135 TVKDGVANCLTDLGG 149
KD A CL L G
Sbjct: 113 VCKDKRAECLIPLTG 127
>gi|413921934|gb|AFW61866.1| hypothetical protein ZEAMMB73_690183 [Zea mays]
Length = 266
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 4 SERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQ 63
+ R R G+ EE+ +E + LEAWER+YAD+RSWE+LQEDESG LRP+D + HA+
Sbjct: 98 ASRRRNPGDEEEDVGDEGRV---LEAWERAYADERSWESLQEDESGLLRPVDTKTLVHAR 154
Query: 64 YRRRLRGRSLTVATARIQKGLIR 86
YR L RS T A ARIQKGL R
Sbjct: 155 YRWCLLLRS-TAAAARIQKGLFR 176
>gi|340055688|emb|CCC50009.1| putative DNA repair and transcription factor protein, fragment
[Trypanosoma vivax Y486]
Length = 355
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 123/301 (40%), Gaps = 49/301 (16%)
Query: 102 DFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 161
D+ P+R++ + Q+ AFV +FD+NPL+ +G+V ++DGVA+ + + ++AL K
Sbjct: 19 DYLPTRLLALRPQLHAFVHTYFDENPLAALGVVVMRDGVAHRICSCTTNATDILQALEVK 78
Query: 162 ---LGCSGDSSIQNALDLVHGLLNQIPSYGHR---------------------------E 191
G SG S++N L L L ++ R
Sbjct: 79 YFLFGGSGAMSLENGLRLALSELVELKRIAKRLRQDGVDTGNGSNGSRGPTLEQPSARLR 138
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
++++ S+++ DP D+ + ++R VI S + + TGG L
Sbjct: 139 IVVISSSVTLVDPHDVFAVQRLVARLRVRVDVISFSGAVHALEEAAAVTGGMLHTPLGYD 198
Query: 252 HSKELILEHAPPPPAIA--EFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRC 309
H ++ A P A E + +I++GFP + + S EV+ CP+C
Sbjct: 199 HLTTILRRLAAPDKMAARREGEKSPMIRIGFP-------LHMESAEAEVERRRFIACPQC 251
Query: 310 KARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQ 369
P+ C +C L + S P + H IA D PS H + R Q
Sbjct: 252 GLVQTATPSTCHLCKLLICSVPLM-----HCTFIAHNDLCAPS-----HKMKRGRHVAMQ 301
Query: 370 Q 370
Q
Sbjct: 302 Q 302
>gi|72393367|ref|XP_847484.1| DNA repair and transcription factor protein [Trypanosoma brucei
TREU927]
gi|62359582|gb|AAX80015.1| DNA repair and transcription factor protein, putative [Trypanosoma
brucei]
gi|70803514|gb|AAZ13418.1| DNA repair and transcription factor protein, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 351
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 36/263 (13%)
Query: 101 MDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 160
+D+ P+R++ + Q+ FV + D NPL+ +G+V ++DGVA L + ++ L
Sbjct: 18 LDYLPTRLIALRPQLNKFVHTYLDANPLASLGVVVMRDGVAQRLIPCTTNATDIVQTLEL 77
Query: 161 K---LGCSGDSSIQNALDLVHGLLNQIPSYGHR---------------------EVLILY 196
K G SG S++N L + L + R +++
Sbjct: 78 KYFRFGGSGAMSLENGLRMALSELVDLRRIAKRLRENNSGSTGSDVQEDVTSRLRIVLAS 137
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKEL 256
S+++ DP D+ + + ++R VI + + + TGG+ ++ H E+
Sbjct: 138 SSVTIVDPLDVFAVQKIVAQLRVRVDVISFCGAVHVLQEAAVLTGGSLHTPMNYEHLTEI 197
Query: 257 ILEHAPPPPAIAEFAIA--SLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
+ A P A +LI++GFP G+ E + TCP+C
Sbjct: 198 LRHLASPEGGSARHVDVQPALIQIGFPMYVGD----------EAEGKRYLTCPQCGLIQT 247
Query: 315 ELPTECRICGLQLVSSPHLARSY 337
+P+ C +C L L S P + ++
Sbjct: 248 SIPSTCSLCKLLLFSVPLIHVTF 270
>gi|261330741|emb|CBH13726.1| DNA repair and transcription factor protein,putative [Trypanosoma
brucei gambiense DAL972]
Length = 351
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 36/263 (13%)
Query: 101 MDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 160
+D+ P+R++ + Q+ FV + D NPL+ +G+V ++DGVA L + ++ L
Sbjct: 18 LDYLPTRLIALRPQLNKFVHTYLDANPLASLGVVVMRDGVAQRLIPCTTNATDIVQTLEL 77
Query: 161 K---LGCSGDSSIQNALDLVHGLLNQIPSYGHR---------------------EVLILY 196
K G SG S++N L + L + R +++
Sbjct: 78 KYFRFGGSGAMSLENGLRMALSELVDLRRIAKRLRENNSGSTGSDVQEDVTSRLRIVLAS 137
Query: 197 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKEL 256
S+++ DP D+ + + ++R VI + + + TGG+ ++ H E+
Sbjct: 138 SSVTIVDPLDVFAVQKIVAQLRVRVDVISFCGAVHVLQEAAVLTGGSLHTPMNYEHLTEI 197
Query: 257 ILEHAPPPPAIAEFAIA--SLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVC 314
+ A P A +LI++GFP G+ E + TCP+C
Sbjct: 198 LRHLASPEGGSARHVGVQPALIQIGFPMYVGD----------EAEGKRYLTCPQCGLIQT 247
Query: 315 ELPTECRICGLQLVSSPHLARSY 337
+P+ C +C L L S P + ++
Sbjct: 248 SIPSTCPLCKLLLFSVPLIHVTF 270
>gi|294930956|ref|XP_002779725.1| btf, putative [Perkinsus marinus ATCC 50983]
gi|239889260|gb|EER11520.1| btf, putative [Perkinsus marinus ATCC 50983]
Length = 200
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 29 AWERSYADDRSWEALQEDESGFLRPIDNSAI---YHAQYRRRL------RGRSLTVATAR 79
AWE Y +SW + +D+ G L D ++I Y Y L G + +
Sbjct: 28 AWEADYT--KSWINITKDQHGKLVVRDEASIARKYPRNYDGVLPVSAGEDGELVHKQSMA 85
Query: 80 IQKGLIRYLYIVIDLSRAAAEMDFRPSRM-VVVAKQVEAFVREFFDQNPLSQIGLVTVKD 138
+++GL+R+LY+V+D+S A MD++ +R+ VV+ F+ ++FD NP+S + ++ ++D
Sbjct: 86 LKRGLLRFLYLVVDMSSAMQNMDYKQNRLDFVVSHLCRNFIPQYFDLNPISNLSVLALRD 145
Query: 139 GVANCLTDLGGSPESHIKALM--GKLGCSGDSSIQNALDLV-HGLLNQIPSYG 188
A+ +T + G P S ++ ++ G SG +S+ NAL+ V +P YG
Sbjct: 146 QRAHFVTRMSGQPASQMERVLQFSTGGASGSASLVNALEAVGQAAKGSLPRYG 198
>gi|147832400|emb|CAN64423.1| hypothetical protein VITISV_032275 [Vitis vinifera]
Length = 578
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 38/41 (92%)
Query: 120 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 160
+EFFDQ+P SQIGLVT+KDG+A CLTDLGGSP+SH+KALM
Sbjct: 199 KEFFDQDPFSQIGLVTIKDGLAQCLTDLGGSPDSHVKALMA 239
>gi|432104566|gb|ELK31178.1| Baculoviral IAP repeat-containing protein 1 [Myotis davidii]
Length = 1414
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 77 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 136
Query: 145 TDLGGS-----PESHIKALM 159
T+L G+ ESH K L+
Sbjct: 137 TELSGTYHVILDESHYKELL 156
>gi|431907809|gb|ELK11416.1| Baculoviral IAP repeat-containing protein 1 [Pteropus alecto]
Length = 1274
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+R+LY+VID SR + D +P+R+ K +E F+ E+FDQNP+SQIG++ K A
Sbjct: 15 FMRHLYVVIDGSRTMEDQDLKPNRLTCTLKLLEYFIEEYFDQNPISQIGIIVTKSKRAEK 74
Query: 144 LTDLGGS-----PESHIKALM 159
LT+L G+ ESH K L+
Sbjct: 75 LTELSGTYHVILDESHYKELL 95
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 55/97 (56%), Gaps = 12/97 (12%)
Query: 239 ETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRA--------GEGSIS 290
E GTY V LDESH KEL+ H PPPA + SLI+MGFPQ + S S
Sbjct: 77 ELSGTYHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFS 135
Query: 291 ICSCHKEVKIGV---GYTCPRCKARVCELPTECRICG 324
+ + G+ GY CP+C+A+ CELP EC+ICG
Sbjct: 136 MAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICG 172
>gi|253742551|gb|EES99376.1| TFIIH P44 [Giardia intestinalis ATCC 50581]
Length = 393
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 39/357 (10%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
Q G+ R++ ++ID S + + + + +V+ PL ++ +T+++ +
Sbjct: 46 QVGIFRHVVLIIDSSES-----LPLTYLSEFINSLFLYVQFILSHRPLIRVAFMTLQNSL 100
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLL-NQIPSYGHREVLILYSAL 199
+ + + L SG ++ LD + LL N + R +L + +
Sbjct: 101 CYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQAYELLMNSKSAASSRRILYINFSS 160
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES-------- 251
+T D DI ++K ++++ + L+ + H+ ++TGG + + E+
Sbjct: 161 ATIDSLDIFNVLEKLLSAQVQVDTVSLTNSFGVLDHISRKTGGRHLIIDRETKGGLLNLL 220
Query: 252 -----HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTC 306
S+++ + A + I +GFP + +I C CH G Y C
Sbjct: 221 KRLELRSEDVRITQATEE-GDSNVDEGKFIMVGFPVHICDDAI--CFCHNRHGTGF-YEC 276
Query: 307 PRCKARVCELPTECRICGLQLVSSPHLARS---YHHLFPIAPFD------EATPSRLNDL 357
P C A VC++ +EC CGLQLV P+L R + D EA S N
Sbjct: 277 PFCYAVVCDI-SECVCCGLQLVMYPNLYRGALLHKRALSFTKSDSSLVQPEAATSSANQA 335
Query: 358 ----HNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
H ++S C CQ +++ C C FC C + E+ +CP C
Sbjct: 336 EDSKHIKAKSVCSLCQMQYGTDTDRSQY--LCSFCSGPFCKSCSELLAEAKVSCPVC 390
>gi|324562745|gb|ADY49854.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 85
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 278 MGFPQRAGEGSISICSCHK---EVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLA 334
MGFP + C CH+ G G+ CP+C AR C LP ECR+C L L+S+P LA
Sbjct: 1 MGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGARYCSLPVECRVCKLMLISAPQLA 60
Query: 335 RSYHHLFPIAPFDEA 349
RS+HHL P+ F E
Sbjct: 61 RSFHHLLPLPAFKEV 75
>gi|156341095|ref|XP_001620650.1| hypothetical protein NEMVEDRAFT_v1g147480 [Nematostella vectensis]
gi|156205835|gb|EDO28550.1| predicted protein [Nematostella vectensis]
Length = 93
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 6/91 (6%)
Query: 41 EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAE 100
EA++ED+ G L+ + + + H R+R+ R ++ G++R+LYI+ID+S+A E
Sbjct: 1 EAIREDDEGSLQTLVDELV-HRSKRQRVAARP-----GNVRLGMMRHLYIIIDMSKAMEE 54
Query: 101 MDFRPSRMVVVAKQVEAFVREFFDQNPLSQI 131
D +P+R+ AK +E F+ E+FDQNP+SQ+
Sbjct: 55 ADLKPNRLSCSAKLLENFITEYFDQNPISQV 85
>gi|123446514|ref|XP_001312007.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893838|gb|EAX99077.1| hypothetical protein TVAG_290240 [Trichomonas vaginalis G3]
Length = 166
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 13/136 (9%)
Query: 108 MVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCS 165
M ++ Q F+ +FF QNPLSQ+ ++ + LT L + + H+K + +
Sbjct: 1 MKLIQDQTIDFINDFFVQNPLSQLSILATYESTCRILTPLSCNVQDHVKKIKSLSLEDHG 60
Query: 166 GDSSIQNALDLVHGLLN---------QIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 216
G+ S++++L + +L QI + +EVLI+Y +L+TCD I +T+ ++
Sbjct: 61 GEPSLESSLSIATAILGNGEKNPGLAQIST--TKEVLIVYGSLTTCDNSPIYKTLNLVRD 118
Query: 217 SKIRCSVIGLSAEMFI 232
SKI+ S+IGL A++F+
Sbjct: 119 SKIKVSIIGLGAKVFV 134
>gi|222838932|gb|EEE77283.1| predicted protein [Populus trichocarpa]
Length = 72
Score = 70.9 bits (172), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 1 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 60
Query: 145 TDLGG 149
T+L G
Sbjct: 61 TELSG 65
>gi|238503359|ref|XP_002382913.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
flavus NRRL3357]
gi|220691723|gb|EED48071.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
flavus NRRL3357]
Length = 87
Score = 70.9 bits (172), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 100 EMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL- 158
E D RP+R ++ + + VREFF+QNP+SQ+G++ ++DG+A ++DL G+P HI A+
Sbjct: 3 EKDLRPTRYLLTLRYAQELVREFFEQNPISQLGVLGLRDGLAIRISDLSGNPTEHISAIQ 62
Query: 159 -MGKLGCSGDSSIQNALDLVHGLL 181
+ G S+QN +++ G L
Sbjct: 63 TLRDQDPKGLPSLQNGIEMARGAL 86
>gi|241165648|ref|XP_002409694.1| Bcl-2-associated transcription factor (BTF), putative [Ixodes
scapularis]
gi|215494619|gb|EEC04260.1| Bcl-2-associated transcription factor (BTF), putative [Ixodes
scapularis]
Length = 123
Score = 70.5 bits (171), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 211 IQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEF 270
+QKC IRCSV+GL+AE+ +C L + TGGTY+V +DE+H KE++ +HA PPP
Sbjct: 1 MQKCS---IRCSVVGLAAEVRVCCALTKATGGTYNVIMDENHFKEILFQHAIPPPVTGN- 56
Query: 271 AIASLIKMGFPQRAGEGSISICS 293
+ +SLI+M A S++I S
Sbjct: 57 SESSLIRMVHVSPACPPSLTIMS 79
>gi|169806142|ref|XP_001827816.1| transcription-repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|161779264|gb|EDQ31287.1| transcription-repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 187
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 15/182 (8%)
Query: 229 EMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGS 288
E+ + K +C TGG Y V ++ K ++ + ++ SLI++ FP+
Sbjct: 19 EVTLLKKVCISTGGKYVVLINSFQFKSILSDFLYLLESLD--LKCSLIEVEFPKNIYTQH 76
Query: 289 ISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDE 348
+ C+CH + V + CP+CK VC +P C IC L+L+SS + + + + F +
Sbjct: 77 L--CACHLNL-CSVLFECPKCKGFVCTIPFTCPICKLELISSTDIRDLICYNYYLESFVK 133
Query: 349 ATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCP 408
S+ +L ++ ++ C+GC++ + S C KC FC CD +H ++ C
Sbjct: 134 IVTSK--ELSSLEKNKCYGCEKLEVIS--------VCNKCLSPFCYNCDAKLHNVINFCS 183
Query: 409 GC 410
C
Sbjct: 184 FC 185
>gi|119498681|ref|XP_001266098.1| transcription factor and DNA repair complex, core TFIIH, putative
[Neosartorya fischeri NRRL 181]
gi|119414262|gb|EAW24201.1| transcription factor and DNA repair complex, core TFIIH, putative
[Neosartorya fischeri NRRL 181]
Length = 157
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 104 RPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 161
RP+R ++ + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 77 RPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRVSDMSGNPTEHISAIQALRD 136
Query: 162 LGCSGDSSIQNALDLVHGLL 181
G S+QN L++ G L
Sbjct: 137 HDPKGLPSLQNGLEMARGAL 156
>gi|321452740|gb|EFX64060.1| hypothetical protein DAPPUDRAFT_267127 [Daphnia pulex]
Length = 135
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 159 MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 218
M C+G++S+QN+ + L +P++ RE+L L L I+ KE+
Sbjct: 39 MKDTSCNGETSLQNSFERAMCGLKNMPAHSSREMLTLLVIL-----------IKSFKENN 87
Query: 219 IRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELIL 258
IR S+IGL+AE+ IC+ + + TGGTY+V LD+ + KE ++
Sbjct: 88 IRVSIIGLAAEVRICQEIAKRTGGTYNVLLDDHYLKETLI 127
>gi|159115826|ref|XP_001708135.1| TFIIH P44 [Giardia lamblia ATCC 50803]
gi|157436245|gb|EDO80461.1| TFIIH P44 [Giardia lamblia ATCC 50803]
Length = 406
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 141/372 (37%), Gaps = 56/372 (15%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
Q G+ R++ ++ID S + + + + +V+ PL ++ +T+++ +
Sbjct: 46 QVGIFRHVVLIIDSSES-----LPLTYLSEFVNSLFLYVQFILSHRPLIRVAFMTLQNSL 100
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLL-NQIPSYGHREVLILYSAL 199
+ + + L SG ++ LD + LL N + R +L + +
Sbjct: 101 CYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQAYELLMNNKSAASSRRILYVNFSN 160
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALD---------- 249
+T D DI ++K ++I+ ++ L+ + H+ + TGG + +
Sbjct: 161 ATLDSLDIFSVLEKLLAAQIQVDIVSLTNRFGVLDHISRVTGGRHLIVDRDVKGGLLNLL 220
Query: 250 ------------------ESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISI 291
E HS L H + I +GFP + +I
Sbjct: 221 KRLELRSEDTRLMHSKGREEHSLNLQASHNQTA---TDTEGGKFIMVGFPVHICDDAI-- 275
Query: 292 CSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARS---YHHLFPIAPFDE 348
C CH G Y CP C A VC++ +EC CGLQLV P+L R + D
Sbjct: 276 CFCHNRHGTGF-YECPFCYAVVCDI-SECVCCGLQLVMYPNLYRGALLHKRALSFKKLDT 333
Query: 349 A---TPSRLN------DLHNI-SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI 398
+ T S +N D NI ++S C CQ + + C C FC C
Sbjct: 334 SLSQTESIVNTTNPAEDGKNIKAKSMCSLCQMQYGTDTDTSQ--YLCSFCDAPFCKSCSE 391
Query: 399 YIHESLHNCPGC 410
+ E+ C C
Sbjct: 392 LLAEAKVACTVC 403
>gi|308162603|gb|EFO64989.1| TFIIH P44 [Giardia lamblia P15]
Length = 416
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 115/291 (39%), Gaps = 45/291 (15%)
Query: 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 140
Q G+ ++ ++ID S + + + + +V+ PL ++ +T+++ +
Sbjct: 46 QVGIFHHVVLIIDSSES-----LPLTYLSEFVNSLFLYVQFILSHRPLIRVAFMTLQNSL 100
Query: 141 ANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLL-NQIPSYGHREVLILYSAL 199
+ + + L SG ++ LD + LL N + R +L + +
Sbjct: 101 CYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQAYDLLMNSGSAASSRRILYINFSN 160
Query: 200 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTY--------------- 244
+T D DI ++K ++I+ V+ L+ + H+ + TGG +
Sbjct: 161 ATLDSLDIFSVLEKLFAAQIQVDVVSLTNSFGVLDHISRTTGGRHLIVDREIKGGLLNLL 220
Query: 245 -------------------SVALDESHSKELILEHAPPPPAIAEFAI-ASLIKMGFPQRA 284
++ L SH++ + +A I +GFP
Sbjct: 221 KRLELRSEDAKIMQSKGEGTLNLQMSHNQIITDAKCTKDTVLASNTEEGKFIMVGFPVHI 280
Query: 285 GEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLAR 335
+ +I C CH G Y CP C A VC++ +EC CGLQLV P+L R
Sbjct: 281 CDDAI--CFCHNRHGTGF-YECPFCYAIVCDI-SECVCCGLQLVMYPNLYR 327
>gi|426384460|ref|XP_004058783.1| PREDICTED: general transcription factor IIH subunit 2-like [Gorilla
gorilla gorilla]
Length = 106
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFV 119
+V+D SR + D +P+R+ K F+
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKVKFKFI 92
>gi|444513341|gb|ELV10306.1| General transcription factor IIH subunit 2 [Tupaia chinensis]
Length = 87
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAK 113
+V+D SR + D +P+R+ K
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLK 86
>gi|321454255|gb|EFX65433.1| hypothetical protein DAPPUDRAFT_264704 [Daphnia pulex]
Length = 72
Score = 54.7 bits (130), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 16/85 (18%)
Query: 184 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT 243
+P++ RE+L L L E+ IR S+IGL+AE+ IC+ + + TGGT
Sbjct: 1 MPAHSSREMLTLLVIL----------------ENNIRVSIIGLAAEVRICQEIAKRTGGT 44
Query: 244 YSVALDESHSKELILEHAPPPPAIA 268
Y+V LD+ + KE ++ + P A+A
Sbjct: 45 YNVLLDDHYLKETLILNQVQPLAVA 69
>gi|337743327|gb|AEI73160.1| GTF2E2 [Kryptolebias marmoratus]
Length = 74
Score = 52.4 bits (124), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 17 DDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVA 76
D+E E + WE Y +R+WE L+EDESG L+ +Y ++ +R +T +
Sbjct: 2 DEESERA----KRWEGGY--ERTWEVLKEDESGSLKATVEEILYQSKRKR------VTES 49
Query: 77 TARIQKGLIRYLYIVIDLSRAAAE 100
+++ G++R+LY+VID SR+ E
Sbjct: 50 HGQVRLGMMRHLYVVIDGSRSMEE 73
>gi|496307|gb|AAA35101.1| stem loop mutation suppressor, partial [Saccharomyces cerevisiae]
Length = 62
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 365 CFGCQQSL-LASGNKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCESLRQSNP 418
CF CQ + +K G + C CK+ FC++CD++IHE LHNCPGCE S P
Sbjct: 4 CFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCE----SKP 59
Query: 419 VVA 421
V+
Sbjct: 60 VIT 62
>gi|339898414|ref|XP_003392576.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|321399557|emb|CBZ08744.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 445
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 110/309 (35%), Gaps = 79/309 (25%)
Query: 102 DFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 161
D+ P+ ++ + + V + D PL+ +G+V ++DG+++ L + + L
Sbjct: 19 DYLPNYLLAMRPPLLRLVERYLDSTPLASLGVVVMRDGISHRLLPCTTNRNEIVDVLERD 78
Query: 162 L---GCSGDSSIQNALDLVHGLLNQI--------------PSYGHRE------------- 191
+ G SG +S++N L + L + S+ R
Sbjct: 79 VFLHGGSGSTSMENGLRMAMSELVDMREVAALAAATAKKSSSFAARNPRAAWKGSATQLN 138
Query: 192 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251
V++L ++++ DP D+ + IR SV+ L + + ETGGT L+
Sbjct: 139 VIVLTASVTLIDPTDVFAVVNIMAALSIRISVVSLVGAVHVFDVCTVETGGTLYCPLNYD 198
Query: 252 HSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYT------ 305
H L H + A A A++ + QR G + C +E GV
Sbjct: 199 H-----LLHIMDELSTAHRAQAAMARKKRHQRGGRQQ-RVKRCREEDVEGVEVNDDDSDG 252
Query: 306 -------------------------------------CPRCKARVCELPTECRICGLQLV 328
CP+C +PT C +C L L
Sbjct: 253 ADAPYLIPIGCPVYLEAPLSDSAEPSSAASSRSFYLGCPQCHLIQLTVPTTCSMCRLLLC 312
Query: 329 SSPHLARSY 337
S+P L ++
Sbjct: 313 SAPMLYSTF 321
>gi|307354884|ref|YP_003895935.1| hypothetical protein Mpet_2754 [Methanoplanus petrolearius DSM
11571]
gi|307158117|gb|ADN37497.1| conserved hypothetical protein [Methanoplanus petrolearius DSM
11571]
Length = 316
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+VID S + D+ P+R+ E + D +P +G+V + G A+ + L
Sbjct: 92 LVIDDSGSMQATDYSPNRLEATKSAAEELIN---DLDPKDYVGIVVFESG-ASTASYLSP 147
Query: 150 SPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIM- 208
+S I+ L + G ++I + L L + + IP+ ++V+IL S + G I
Sbjct: 148 DKDSVIENLENIMEKDGATAIGDGLSLGINMADSIPN--RKKVVILLSD-GVNNAGVISP 204
Query: 209 -ETIQKCKESKIRCSVIGLSAEMFIC-------------------KHLCQETGGTYSVAL 248
E IQ K+S I+ IG+ +E + K + ETGG Y ++
Sbjct: 205 DEAIQFAKDSDIQVFTIGMGSEQPVVMGYDWFGNPQYAELDEATLKEIADETGGKYFKSV 264
Query: 249 DESHSKEL 256
D+ E+
Sbjct: 265 DDQTLNEI 272
>gi|66361323|pdb|1Z60|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of Human
Tfiih P44 Subunit
Length = 59
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 365 CFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
C+GCQ L K C C+ FC++CD+++H+SLH+CPGC
Sbjct: 18 CYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58
>gi|736405|gb|AAA64503.1| BTF2p44 [Homo sapiens]
Length = 69
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 342 PIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIH 401
P+ F E N C+GCQ L K C C+ FC++CD+++H
Sbjct: 1 PLDAFQEIPLEEYN-----GERFCYGCQGEL-----KDQHVYVCAXCQNVFCVDCDVFVH 50
Query: 402 ESLHNCPGC 410
+SLH CPGC
Sbjct: 51 DSLHCCPGC 59
>gi|392579844|gb|EIW72971.1| hypothetical protein TREMEDRAFT_70875 [Tremella mesenterica DSM
1558]
Length = 343
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 27/214 (12%)
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 148
+V+D S D+ P+R A+ V D NP S +GL+T+ + L
Sbjct: 7 MLVLDNSEYMRNGDYPPTRFQAQAQAVSTVFTAKTDSNPESAVGLMTMAGKSPSLLV--- 63
Query: 149 GSPESHIKAL---MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG 205
+P + I L MGK GDS A+ + L + R+ +I++ DP
Sbjct: 64 -TPTNDIGKLLSAMGKASIGGDSDFSTAVQIAQLALKHRENKNQRQRVIVFVGSPVSDPQ 122
Query: 206 DIMETI-QKCKESKIRCSVIGLSAEMFICKH----LCQETGGTYSVALDESHSKELILEH 260
+ + + +K +++ + V+ E L + GG ESH ++
Sbjct: 123 EALVKLGKKLRKNNVLVDVVTFGEEGMKNDEKLGALIEAAGG------GESH----LVSI 172
Query: 261 APPPPAIAEFAIASLI-----KMGFPQRAGEGSI 289
P P +++ I+SL+ + P + GE ++
Sbjct: 173 PPGPHLLSDMIISSLLADPNNPVPIPGQVGEDAV 206
>gi|399949974|gb|AFP65630.1| hypothetical protein CMESO_485 [Chroomonas mesostigmatica CCMP1168]
Length = 334
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 111 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDS 168
+ K V + F NP Q+ ++ VK+ ++ L G+ + H + L + K G++
Sbjct: 28 IFKLVSKLIHYFLYSNPSYQLAIILVKNNSIEQISHLSGNKKHHNQGLYRIKKKQDLGEN 87
Query: 169 SIQNALDLVHGLLNQIPSYGHREVLIL----YSALSTCDPGDIMETIQKCKESKIRCSVI 224
S++ A L LL+ +E++I Y + G ++KI+ SVI
Sbjct: 88 SLKTAFFLAKKLLSFNKKKSEQEIIIFMGGSYVSSVFHSFGSFFV------KNKIKFSVI 141
Query: 225 GLSAEMFICKHLCQETGGTYSVALDESH 252
+ F+ + L + TGG Y V +S+
Sbjct: 142 MFYEKTFLFETLVKITGGFYIVLKKDSN 169
>gi|449683803|ref|XP_002159513.2| PREDICTED: general transcription factor IIH subunit 3-like [Hydra
magnipapillata]
Length = 291
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 27/215 (12%)
Query: 137 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGH------- 189
KDG +++ + + K L + S++ N L+ G L + Y H
Sbjct: 86 KDGKYELFSEMNETLQCEFKRLFAE----SVSNMTNRPSLLAGALTKALCYIHSHDRTAN 141
Query: 190 ------REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGT 243
R ++I S+ S+ +M I + I L + TGG
Sbjct: 142 GRRTNARILIIKGSSDSSSQYMTVMNCIFAASKKNIVIDCCALQNNSGFMQQASDITGGV 201
Query: 244 YSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVG 303
Y D S E +L P P + E K+ P + + C CHK++ + VG
Sbjct: 202 YFFIDDFSGMLEYLLWIFLPDPGLRE-------KLNLPTSSQIDYRAACFCHKQL-VDVG 253
Query: 304 YTCPRCKARVCELPTECRICG--LQLVSSPHLARS 336
+ C C + C+ +C C +L S P A+S
Sbjct: 254 FVCSVCLSIYCQFMPKCATCQTRFKLPSLPLNAKS 288
>gi|162448865|ref|YP_001611232.1| hypothetical protein sce0595 [Sorangium cellulosum So ce56]
gi|161159447|emb|CAN90752.1| hypothetical protein sce0595 [Sorangium cellulosum So ce56]
Length = 656
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIP 185
P + L T V L G + I A + L G +++ + +DL + L +
Sbjct: 332 KPGDTVALCTYAGSVREVLAPTGIESKGKILAALADLTAGGSTAMSSGIDLAYSLAERTL 391
Query: 186 SYGH-REVLILYSALSTCDP---GDIMETIQKCKESKIRCSVIGLSAEMF---ICKHLCQ 238
GH V++L + P +I++TI++ ++ I S +G + + + L
Sbjct: 392 VKGHVNRVIVLSDGDANVGPTSHDEILKTIKRARDKGITLSTVGFGQGNYKDLMMEQLAN 451
Query: 239 ETGGTYSVALDESHSKELILEH 260
+ G Y+ E+ ++ + E
Sbjct: 452 QGDGNYAYIDSEAQARRVFSEQ 473
>gi|89096888|ref|ZP_01169779.1| possible D-amino acid dehydrogenase, large subunit [Bacillus sp.
NRRL B-14911]
gi|89088268|gb|EAR67378.1| possible D-amino acid dehydrogenase, large subunit [Bacillus sp.
NRRL B-14911]
Length = 459
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 106 SRMVVVAKQVEAFVREFFDQNPLS-----QIGLVTVKDGVANC-----LTDLGGSPESHI 155
++M++ + ++ F D +S +G +D +C + LG ++
Sbjct: 173 NKMMLAKETIKEFTSSLEDDASVSLMAYGHVGTGNDEDKAESCSRIDEVFPLGAYEKTAF 232
Query: 156 KALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVL-ILYSALSTCDPGDIMETIQKC 214
M SG + + A+D LL+ S ++ L I+ + TCD GD +E Q+
Sbjct: 233 NKSMDSFEASGWTPLAGAIDKARELLSAYNSTDYKNTLYIVSDGVETCD-GDPVEAAQQL 291
Query: 215 KESKI--RCSVIGLSAE---MFICKHLCQETGGTYSVALDESHSKELILEHAPP 263
+ S I + ++IG + K + + GGTY+ D+ ++ +L+ P
Sbjct: 292 QGSNIEAKVNIIGFDVDDEGQKQLKEVAEAGGGTYATVRDKDELEDQVLKKWKP 345
>gi|302496747|ref|XP_003010374.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
gi|291173917|gb|EFE29734.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
Length = 414
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + L+ + + C T G Y ++LD + L+L P
Sbjct: 251 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPDQ 309
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
A + + + + F RA C CH++V + VG+ C C + CE P C
Sbjct: 310 RARRNLILPTRVDVDF--RAA------CFCHRKV-VNVGFVCSICLSIFCEPPEGANCLT 360
Query: 323 CGLQL 327
CG L
Sbjct: 361 CGTHL 365
>gi|301122235|ref|XP_002908844.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 293
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 240 TGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK 299
TGG Y D S + ++ P P++ + + P + ++C CH+EV
Sbjct: 197 TGGIYYKPNDHSGLLQYLISIYLPDPSMRKL-------LKLPSQDSVDFRAMCFCHREV- 248
Query: 300 IGVGYTCPRCKARVCELPTECRICGLQ 326
I Y CP C + CE C CG++
Sbjct: 249 ISTAYVCPVCLSLFCEFRPICSTCGIR 275
>gi|407926572|gb|EKG19539.1| Transcription factor Tfb4 [Macrophomina phaseolina MS6]
Length = 380
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL-DESHSKELILEHAPPPP 265
+M I + +I ++ L+ + + C TGG Y L E + L++ P
Sbjct: 218 VMNAIFAAQRQRIPIDILKLAGDTVFLQQACDATGGIYLKPLAPEGLLQYLMMAFLPDET 277
Query: 266 AIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTE--CRIC 323
A + S ++ F RA C CH+ V + +GY C C + CE P + C C
Sbjct: 278 ARKHLVLPSAGEVDF--RAA------CFCHRRV-VDIGYVCSVCLSIFCEPPADQTCPTC 328
Query: 324 GLQLVSSPHLAR 335
L S + R
Sbjct: 329 TNPLSVSSSITR 340
>gi|326473589|gb|EGD97598.1| transcription factor TFIIH subunit Tfb4 [Trichophyton tonsurans CBS
112818]
Length = 415
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + L+ + + C T G Y ++LD + L+L P
Sbjct: 252 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPDQ 310
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
A + + + + F RA C CH++V + VG+ C C + CE P C
Sbjct: 311 RARRNLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 361
Query: 323 CGLQL 327
CG L
Sbjct: 362 CGTHL 366
>gi|326480715|gb|EGE04725.1| TFIIH basal transcription factor complex p34 subunit [Trichophyton
equinum CBS 127.97]
Length = 415
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + L+ + + C T G Y ++LD + L+L P
Sbjct: 252 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPDQ 310
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
A + + + + F RA C CH++V + VG+ C C + CE P C
Sbjct: 311 RARRNLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 361
Query: 323 CGLQL 327
CG L
Sbjct: 362 CGTHL 366
>gi|327299656|ref|XP_003234521.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
gi|326463415|gb|EGD88868.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
Length = 413
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + L+ + + C T G Y ++LD + L+L P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPDQ 308
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
A + + + + F RA C CH++V + VG+ C C + CE P C
Sbjct: 309 RARRNLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 359
Query: 323 CGLQL 327
CG L
Sbjct: 360 CGTHL 364
>gi|429729565|ref|ZP_19264224.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
gi|429149589|gb|EKX92567.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
Length = 747
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 130 QIGLVTVKDGVAN-------------CLTDLGGSPESHIKALMGKLGCSGDSSIQNALDL 176
Q+ L+T G N L LGGS I A + L SG + I AL
Sbjct: 58 QLALLTYGTGTGNSDEEKEAGCKDVQTLVPLGGS-RDEIAAQIDSLVASGYTPIGPALLA 116
Query: 177 VHGLLNQIPS-YGHREVLILYSALSTCDPGDIMETIQKC--KESKIRCSVIGLSAEMFI- 232
L+ + R ++++ + TC P ++ E + + S + V+GL+A+ +
Sbjct: 117 AEKTLDTKKTEKNKRHIVLVSDGIDTCAPPEMAEVARDIHKRNSNVTIDVVGLNADETVR 176
Query: 233 --CKHLCQETGGTYSVALDESHSKELI 257
K L GGTY+ A DE+ L+
Sbjct: 177 EQLKELAAAGGGTYADATDEASVSTLV 203
>gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae]
Length = 298
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 240 TGGTYSVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK 299
TGG Y D S + ++ P P++ + + P + ++C CH+EV
Sbjct: 202 TGGIYYKPNDHSGLLQYLISIYLPDPSMRKL-------LKLPSQDSVDFRAMCFCHREV- 253
Query: 300 IGVGYTCPRCKARVCELPTECRICGLQ 326
I Y CP C + CE C CG++
Sbjct: 254 ISTAYVCPVCLSLFCEFRPICSTCGIR 280
>gi|315052780|ref|XP_003175764.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
gi|311341079|gb|EFR00282.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
Length = 413
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + L+ + + C T G Y ++LD + L+L P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPDQ 308
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
A + + + + F RA C CH++V + VG+ C C + CE P C
Sbjct: 309 RARRNLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 359
Query: 323 CGLQL 327
CG L
Sbjct: 360 CGTHL 364
>gi|449295631|gb|EMC91652.1| hypothetical protein BAUCODRAFT_300256 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPP 265
+IM I C+ + V+ L+ + + TGG Y ++L S ++ +L++
Sbjct: 226 EIMNCIFACQRMSVPIDVLKLAGDPVFLQQAADTTGGIY-MSLSTSTARAGLLQYLMFAY 284
Query: 266 AIAEFAIASLIKMGFPQRAGEGSI--SICSCHKEVKIGVGYTCPRCKARVCE-LPT-ECR 321
+ + A LI G GEG + C CHK V + +G+ C C + CE LP C
Sbjct: 285 LMDQTARNHLIAPG----EGEGVDFRAACFCHKRV-VDIGFVCSICLSIFCEPLPDGTCL 339
Query: 322 ICGLQL 327
+CG L
Sbjct: 340 LCGSHL 345
>gi|409080333|gb|EKM80693.1| hypothetical protein AGABI1DRAFT_119282 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 361
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 207 IMETI---QKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHA 261
IM ++ QK K + C V G + + TGG+Y + L+ + + LI+
Sbjct: 162 IMNSVFSAQKLKVTIDVCQVFG--PDTVFLQQAAHLTGGSY-IHLERRDALLQYLIMAFL 218
Query: 262 PPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECR 321
PPPP A+ + K+ F RA C CHK + + +G+ C C + C+ C
Sbjct: 219 PPPPIRKVLAVPTQDKVDF--RAA------CFCHKNI-VDIGFVCSVCLSIFCQPVPVCS 269
Query: 322 IC 323
C
Sbjct: 270 TC 271
>gi|426197233|gb|EKV47160.1| hypothetical protein AGABI2DRAFT_204058 [Agaricus bisporus var.
bisporus H97]
Length = 361
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 207 IMETI---QKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHA 261
IM ++ QK K + C V G + + TGG+Y + L+ + + LI+
Sbjct: 162 IMNSVFSAQKLKVTIDVCQVFG--PDTVFLQQAAHLTGGSY-IHLERRDALLQYLIMAFL 218
Query: 262 PPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECR 321
PPPP A+ + K+ F RA C CHK + + +G+ C C + C+ C
Sbjct: 219 PPPPIRKVLAVPTQDKVDF--RAA------CFCHKNI-VDIGFVCSVCLSIFCQPVPVCS 269
Query: 322 IC 323
C
Sbjct: 270 TC 271
>gi|302656245|ref|XP_003019878.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
gi|291183651|gb|EFE39254.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
Length = 517
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + L+ + + C T G Y ++LD + L+L P
Sbjct: 354 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPDQ 412
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
A + + + + F RA C CH++V + VG+ C C + CE P C
Sbjct: 413 RARRNLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 463
Query: 323 CGLQL 327
CG L
Sbjct: 464 CGTHL 468
>gi|242764012|ref|XP_002340688.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723884|gb|EED23301.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 380
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 32/239 (13%)
Query: 103 FRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI-KALMGK 161
+RP R VV +QV VRE S + + +A LT SHI + M
Sbjct: 121 YRPFR--VVEEQVLENVRELLASTDASDVSATSTM--LAGALT----LALSHINRRTMTW 172
Query: 162 LGCSGDSSIQNALDLVHGLLNQIP-----SYGHREVLILYSALSTCDPGD----IMETIQ 212
G+SS+ A S G + +++ S S+ D IM +I
Sbjct: 173 TETHGNSSVDTANAATGSSSAAAVSGGNVSLGLQSRILIVSVSSSTDSAHQYIPIMNSIF 232
Query: 213 KCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPPPAIAEF 270
C+ I V LS + + T G Y ++L E + L++ P +
Sbjct: 233 ACQRLHIPIDVCKLSGDAVFLQQASDATRGVY-MSLTEPRGLLQYLMMAFLPDQRSRKHL 291
Query: 271 AIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPT--ECRICGLQL 327
+ S + + F RA C CH+ V + +G+ C C + CE P +C CG L
Sbjct: 292 VLPSRVDVDF--RAA------CFCHRRV-VNIGFVCSICLSIFCEPPENGDCLTCGTHL 341
>gi|296815720|ref|XP_002848197.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
gi|238841222|gb|EEQ30884.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
Length = 413
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 182 NQIPSYGHREVLILYSALSTCDPG-----DIMETIQKCKESKIRCSVIGLSAEMFICKHL 236
+Q P+ G + IL ++S+ IM +I C+ I + L+ + +
Sbjct: 220 DQSPAGGSLQSRILIVSVSSAADSAQQYIPIMNSIFACQRLHIPIDICKLAGDAVFLQQA 279
Query: 237 CQETGGTY-SVALDESHSKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCH 295
C T G Y SV + L+L P + + + + F RA C CH
Sbjct: 280 CDATRGIYMSVDSPRGFLQYLMLAFLPDQRVRRNLVLPTRVDVDF--RAA------CFCH 331
Query: 296 KEVKIGVGYTCPRCKARVCELP--TECRICGLQL 327
++V + VG+ C C + CE P C CG L
Sbjct: 332 RKV-VDVGFVCSICLSIFCEPPEGANCLTCGTHL 364
>gi|212529242|ref|XP_002144778.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
gi|210074176|gb|EEA28263.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
Length = 380
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 186 SYGHREVLILYSALSTCDPGD----IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG 241
S G + +++ S S+ D IM +I C+ I V LS + + T
Sbjct: 202 SLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSGDAVFLQQASDATR 261
Query: 242 GTYSVALDESHS--KELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK 299
G Y ++L E + L++ P + + S + + F RA C CH+ V
Sbjct: 262 GVY-MSLSEPRGLLQYLMMAFLPDQRSRKHLIVPSRVDVDF--RAA------CFCHRRV- 311
Query: 300 IGVGYTCPRCKARVCELPT--ECRICGLQLVSSPHLAR 335
+ +G+ C C + CE P +C CG L + AR
Sbjct: 312 VNIGFVCSICLSIFCEPPENGDCLTCGTHLEIGDYSAR 349
>gi|258567552|ref|XP_002584520.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905966|gb|EEP80367.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 398
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + LS + + C T G Y V +D + L++ P
Sbjct: 235 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIY-VPVDHPLGFLQYLMVAFLPDQ 293
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
+ + + + + + F RA C CH++V + VG+ C C + CE P +C
Sbjct: 294 RSRSHLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGADCLT 344
Query: 323 CGLQL 327
CG L
Sbjct: 345 CGTHL 349
>gi|303314233|ref|XP_003067125.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106793|gb|EER24980.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037386|gb|EFW19323.1| transcription factor TFIIH subunit Tfb4 [Coccidioides posadasii
str. Silveira]
Length = 395
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + LS + + C T G Y V +D + L++ P
Sbjct: 232 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIY-VPVDHPRGFLQYLMVAFLPDQ 290
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
+ + + + + F RA C CH++V + VG+ C C + CE P +C
Sbjct: 291 RSRRHLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGADCLT 341
Query: 323 CGLQL 327
CG L
Sbjct: 342 CGTHL 346
>gi|119174356|ref|XP_001239539.1| hypothetical protein CIMG_09160 [Coccidioides immitis RS]
gi|392869735|gb|EAS28255.2| transcription factor tfb4 [Coccidioides immitis RS]
Length = 396
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHS--KELILEHAPPP 264
IM +I C+ I + LS + + C T G Y V +D + L++ P
Sbjct: 233 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIY-VPVDHPRGFLQYLMVAFLPDQ 291
Query: 265 PAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP--TECRI 322
+ + + + + F RA C CH++V + VG+ C C + CE P +C
Sbjct: 292 RSRRHLILPTRVDVDF--RAA------CFCHRKV-VDVGFVCSICLSIFCEPPEGADCLT 342
Query: 323 CGLQL 327
CG L
Sbjct: 343 CGTHL 347
>gi|303390986|ref|XP_003073723.1| 26S proteasome regulatory subunit S5A [Encephalitozoon intestinalis
ATCC 50506]
gi|303302871|gb|ADM12363.1| 26S proteasome regulatory subunit S5A [Encephalitozoon intestinalis
ATCC 50506]
Length = 208
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 88 LYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 147
+ ++ D A+ D+ PSR +V + VE+ + F+ N + IG++ + +N +
Sbjct: 5 IVVLFDNGMASQNQDYLPSRFIVQKETVESLISRKFEDNQENTIGIIPLVQVQSNDII-T 63
Query: 148 GGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
SHIK + + + + I L + NQ S G V+ L S L + ++
Sbjct: 64 PTKQRSHIKTFLNDIKLNKEGDIMRCLSQSLHIFNQRDSPGCILVVFLASELQESEKDEL 123
Query: 208 METI 211
I
Sbjct: 124 FARI 127
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,722,886,082
Number of Sequences: 23463169
Number of extensions: 275774506
Number of successful extensions: 903258
Number of sequences better than 100.0: 488
Number of HSP's better than 100.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 900997
Number of HSP's gapped (non-prelim): 599
length of query: 424
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 279
effective length of database: 8,957,035,862
effective search space: 2499013005498
effective search space used: 2499013005498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)