BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014440
(424 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86KZ2|TF2H2_DICDI General transcription factor IIH subunit 2 OS=Dictyostelium
discoideum GN=gtf2h2 PE=3 SV=2
Length = 461
Score = 328 bits (841), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/391 (42%), Positives = 244/391 (62%), Gaps = 21/391 (5%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRS---LTVATARIQKGLIR 86
WE + +++W + EDE G LRP + RRL+ + + R+++G+ R
Sbjct: 43 WENRF--EKTWLTIDEDEHG-LRPSNQEE--RNTRNRRLKNKDRDGILSQDQRVRRGMQR 97
Query: 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146
+L +++DLS+ + D +PSR V+ + VE F++EFFDQNP+SQ+ ++ K+ A +++
Sbjct: 98 HLCLILDLSKTLSNQDLKPSRYQVLLQNVELFIKEFFDQNPISQLSIIITKNSKAEKISE 157
Query: 147 LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206
L G+ HI+A+ + G+ SIQN+L++ L +P YG REVL ++S+L+TCDP
Sbjct: 158 LSGNRLRHIQAMKDAIAMEGEPSIQNSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSS 217
Query: 207 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266
+ +TIQ K IR S I ++AE++ICK + ++T GT V L+E H E ++ PPP
Sbjct: 218 LQKTIQSLKNESIRVSFIHMAAELYICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPT 277
Query: 267 IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQ 326
I + A+L++MGFPQ+ S C CH+++K GY CPRC + CELPT+C+IC L
Sbjct: 278 IGKTE-AALVEMGFPQQITSTVPSPCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLS 335
Query: 327 LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKA--GLCVA 384
LVSSPHLARSYHHLF I F+E LN TC GC L+S K+ L +
Sbjct: 336 LVSSPHLARSYHHLFQIPLFNEVNWKELN-----KNVTCIGC----LSSSEKSILSLFFS 386
Query: 385 CPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415
CP+C++ FCL+CD++IHESLHNCPGCE+ Q
Sbjct: 387 CPRCQEIFCLDCDLFIHESLHNCPGCENKLQ 417
>sp|Q2TBV5|TF2H2_BOVIN General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2
PE=2 SV=1
Length = 395
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 238/394 (60%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR S+IGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ + SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E HN R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEE----HNGER-FCYACQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCSVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|A0JN27|TF2H2_RAT General transcription factor IIH subunit 2 OS=Rattus norvegicus
GN=Gtf2h2 PE=2 SV=1
Length = 396
Score = 318 bits (816), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 237/396 (59%), Gaps = 35/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA- 241
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC-----SCHKEVKIGVGYTCPRCKARVC 314
+ + SLI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYK-----GERFCYGCQGEL-- 353
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 ---KDQHVYVCTVCRNVFCVDCDVFVHDSLHCCPGC 386
>sp|Q13888|TF2H2_HUMAN General transcription factor IIH subunit 2 OS=Homo sapiens
GN=GTF2H2 PE=1 SV=1
Length = 395
Score = 311 bits (796), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|Q6P1K8|T2H2L_HUMAN General transcription factor IIH subunit 2-like protein OS=Homo
sapiens GN=GTF2H2C PE=2 SV=1
Length = 395
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 236/394 (59%), Gaps = 32/394 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDESG L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDESH KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISICSCHKEVKIGV---GYTCPRCKARVCEL 316
+ SLI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 317 PTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG 376
P EC+ICGL LVS+PHLARSYHHLFP+ F E N C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYN-----GERFCYGCQGEL---- 352
Query: 377 NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 -KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|O74995|TFH47_SCHPO TFIIH basal transcription factor complex p47 subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfh47 PE=1 SV=1
Length = 421
Score = 308 bits (790), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/430 (39%), Positives = 242/430 (56%), Gaps = 35/430 (8%)
Query: 3 NSERSRLNGEAEEEDDEEENLNGGLEA----------WERSYADDRSWEALQEDESGFLR 52
N + + + E +DE++N + + WE Y RSW+ +QED G L
Sbjct: 2 NENQKSFDSDKSESEDEQKNGRVKVRSRKTDDNEGYTWEGEY--QRSWDIVQEDAEGSLV 59
Query: 53 PIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVA 112
+ I + +R LR T +Q+G+IR++ +V+DLS + E DF R +
Sbjct: 60 GVIAGLIQSGKRKRLLRD------TTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQI 113
Query: 113 KQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSIQN 172
K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL G+P+SHI+ L CSG+ S+QN
Sbjct: 114 KYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQN 173
Query: 173 ALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 232
AL++ L+ I S+G REVLI++ ++ + DPGDI +TI IR ++GL+AE+ I
Sbjct: 174 ALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAI 233
Query: 233 CKHLCQETGGT----YSVALDESHSKELILEHAPPPPA-IAEFAIASLIKMGFPQRAGEG 287
CK +C +T + Y V + E H +EL+LE PP A+ ASL+ MGFP + E
Sbjct: 234 CKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQ 293
Query: 288 SISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFD 347
S+C+CH G G+ CPRCKA+VC LP EC C L L+ S HLARSYHHLFP+ +
Sbjct: 294 LPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWS 352
Query: 348 EATPSRLNDLHNISRSTCFGCQQSLLA------SGNKAGLCVACPKCKKHFCLECDIYIH 401
E S N + CF CQ + + + ACP CK HFCL+CD++ H
Sbjct: 353 EIPWSA-----NPKSTHCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAH 407
Query: 402 ESLHNCPGCE 411
E LH C GC+
Sbjct: 408 EQLHECYGCQ 417
>sp|Q9JIB4|TF2H2_MOUSE General transcription factor IIH subunit 2 OS=Mus musculus
GN=Gtf2h2 PE=1 SV=1
Length = 396
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/396 (42%), Positives = 237/396 (59%), Gaps = 35/396 (8%)
Query: 30 WERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIRYLY 89
WE Y +R+WE L+EDE+G L+ ++ A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 90 IVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 149
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 150 SPESHIKALMG--KLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI 207
+P HI +L + C G+ S+ N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 208 METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPAI 267
+ I+ K +KIR SVIGLSAE+ +C L +ETGGTY V LDE+H KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPAS 242
Query: 268 AEFAIASLIKMGFPQRA--------GEGSISIC-----SCHKEVKIGVGYTCPRCKARVC 314
+ SLI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 315 ELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLA 374
ELP EC+ICGL LVS+PHLARSYHHLFP+ F E + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYK-----GERFCYGCQGEL-- 353
Query: 375 SGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
K C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 ---KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 386
>sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSL1 PE=1 SV=1
Length = 461
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 233/401 (58%), Gaps = 27/401 (6%)
Query: 24 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKG 83
NGG AWE RSW+ ++ D+ G + + S + ++R +++T Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIV--EARKKRTAKKNITP----YQRG 121
Query: 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 143
+IR L + +D S A E D RP+R ++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 144 LTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALST 201
++ + G+P+ HI AL + K G+ S+QNAL++ GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 202 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG----GTYSVALDESHSKELI 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 258 LEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
E P P +L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL-LASG 376
T C C L L+ S HLARSYHHL P+ F E + CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTT-----EKFRSEDCFSCQSRFPILKN 415
Query: 377 NKAGLCVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 412
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>sp|P34567|TF2H2_CAEEL General transcription factor IIH subunit 2 OS=Caenorhabditis
elegans GN=T16H12.4 PE=3 SV=3
Length = 376
Score = 271 bits (692), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 228/400 (57%), Gaps = 31/400 (7%)
Query: 16 EDDEEENLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLT 74
+DDE++ WE YA+ + + L EDE G + + A Y A +R+ R LT
Sbjct: 2 DDDEQKGYT-----WEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKAR---LT 51
Query: 75 VATARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLV 134
RI+ G++R++ IVID SR PSR VVV K ++ F+ FF+QNP++QIGL+
Sbjct: 52 KRPERIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLI 111
Query: 135 TVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREV 192
T KD A+ LT + G+ ++L + + C GD S+QNAL L L +P + REV
Sbjct: 112 TCKDRKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREV 171
Query: 193 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESH 252
+++ SALST DPG+I TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H
Sbjct: 172 VLVISALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDH 231
Query: 253 SKELILEHAPPPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVK--IGVGYTCPRCK 310
+ L +H PP + A+ + + I +GFP + S C CH + K G+ C +C
Sbjct: 232 LQLLFSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCG 290
Query: 311 ARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQ 370
AR C +P EC +C L LV++P LAR++ HL P++ F++ ++R C+ C+
Sbjct: 291 ARHCSIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACET 341
Query: 371 SLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410
L G + C C+ FCL+CD +HESLH CPGC
Sbjct: 342 RLSGEGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb4 PE=1 SV=1
Length = 297
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 35/201 (17%)
Query: 153 SHIKALMGKLG-CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDI---- 207
S +K LM S + I AL +NQ+ + IL +L+ GD+
Sbjct: 116 SGMKRLMSSTDKVSRKTMISGALSRALAYINQVQNKNTLRSRILIFSLT----GDVALQY 171
Query: 208 ---METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPP 264
M I ++ I +V + + TGG Y + +D P
Sbjct: 172 IPTMNCIFCAQKKNIPINVCNIEGGTLFLEQAADATGGIY-LKVDN-------------P 217
Query: 265 PAIAEFAIASLI-------KMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELP 317
+ ++ + SL + P +A + C CHK+V + +G+ C C + CE
Sbjct: 218 KGLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKV-LDIGFVCSVCLSIFCEPR 276
Query: 318 TECRICGLQLVSSPHLARSYH 338
C C + P +++ H
Sbjct: 277 VHCSTCHTKFTVEP-MSKKLH 296
>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL
PE=5 SV=1
Length = 862
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 16/220 (7%)
Query: 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 144
++ L +D S DF P+R+ V NP + +GL+T+ D L
Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVL 546
Query: 145 TDLGGSPES-HIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203
T L +P++ I + + + G + + + H L H+ +I + D
Sbjct: 547 TTL--TPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVED 604
Query: 204 PGDIMETIQKC-KESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAP 262
+ + KC K+ K+ +I E + L + L+ L P
Sbjct: 605 NEKNLVKLAKCLKKEKVNVDIINFGEEEVNTEKLT-----AFVNTLNGKDGTGSHLVTVP 659
Query: 263 PPPAIAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGV 302
P P++A+ I+ FP AGEG + + + GV
Sbjct: 660 PGPSLADALIS------FPILAGEGGAMMGLGASDFEFGV 693
>sp|Q7MLE8|ASTE_VIBVY Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain YJ016)
GN=astE PE=3 SV=1
Length = 342
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPL 128
+I +L+R E + +PS+ +V+A Q++ V+ FFD P+
Sbjct: 107 FIEENLNRLFDEKEHQPSKELVIADQLKLLVKAFFDNTPV 146
>sp|Q8D926|ASTE_VIBVU Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain CMCP6)
GN=astE PE=3 SV=2
Length = 342
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 89 YIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPL 128
+I +L+R E + +PS+ +V+A Q++ V+ FFD P+
Sbjct: 107 FIEENLNRLFDEKEHQPSKELVIADQLKLLVKAFFDNTPV 146
>sp|Q8BIX3|AL14E_MOUSE ARL14 effector protein OS=Mus musculus GN=Arl14ep PE=2 SV=1
Length = 276
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 289 ISICSCHKEVKIGVGYTCPRCKARVCELPTECR-----------ICGLQLVSSPHLARSY 337
+ +C C E +G Y CP C + C ECR I G +++ + H ++Y
Sbjct: 205 MDLCDCLDEDCLGCFYACPTCGSTKC--GAECRCDRKWLYEQIEIEGGEIIHNKHAGKAY 262
Query: 338 HHLFPIAPFD 347
L P P+D
Sbjct: 263 GLLSPCHPYD 272
>sp|Q5FVK8|AL14E_RAT ARL14 effector protein OS=Rattus norvegicus GN=Arl14ep PE=2 SV=1
Length = 276
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 289 ISICSCHKEVKIGVGYTCPRCKARVCELPTECR-----------ICGLQLVSSPHLARSY 337
+ +C C E +G Y CP C + C ECR I G +++ + H ++Y
Sbjct: 205 MDLCDCLDEDCLGCFYACPTCGSTKC--GAECRCDRKWLYEQIEIEGGEIIHNKHAGKAY 262
Query: 338 HHLFPIAPFD 347
L P P+D
Sbjct: 263 GLLSPCHPYD 272
>sp|C4KZP9|EFTU_EXISA Elongation factor Tu OS=Exiguobacterium sp. (strain ATCC BAA-1283 /
AT1b) GN=tuf PE=3 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 18/86 (20%)
Query: 1 MKNSERSRLNGEAEEEDDEEENLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAIY 60
+K S LNGEA+ E+ E +N D+ E +++ E F+ P+++
Sbjct: 171 IKGSALGALNGEAQWEEKVMELMNA---------VDEYIPEPVRDTEKDFMMPVEDVF-- 219
Query: 61 HAQYRRRLRGRSLTVATARIQKGLIR 86
+ GR TVAT R+++G++R
Sbjct: 220 ------SITGRG-TVATGRVERGVLR 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,382,025
Number of Sequences: 539616
Number of extensions: 6742983
Number of successful extensions: 24734
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 24617
Number of HSP's gapped (non-prelim): 94
length of query: 424
length of database: 191,569,459
effective HSP length: 120
effective length of query: 304
effective length of database: 126,815,539
effective search space: 38551923856
effective search space used: 38551923856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)