Query 014440
Match_columns 424
No_of_seqs 266 out of 1197
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x5n_A SPRPN10, 26S proteasome 100.0 5E-28 1.7E-32 224.9 19.3 172 85-258 2-182 (192)
2 4b4t_W RPN10, 26S proteasome r 99.9 8.5E-26 2.9E-30 220.0 17.2 172 87-259 5-187 (268)
3 3ibs_A Conserved hypothetical 99.9 2.6E-22 8.8E-27 185.8 20.7 170 81-260 9-209 (218)
4 1z60_A TFIIH basal transcripti 99.8 3E-22 1E-26 151.5 1.7 59 343-411 1-59 (59)
5 1q0p_A Complement factor B; VO 99.8 2E-19 6.9E-24 166.4 12.5 170 87-262 17-217 (223)
6 1shu_X Anthrax toxin receptor 99.8 1.9E-19 6.4E-24 161.8 11.9 166 87-261 8-178 (182)
7 2b2x_A Integrin alpha-1; compu 99.8 2.5E-18 8.6E-23 160.8 15.4 167 87-261 24-208 (223)
8 1v7p_C Integrin alpha-2; snake 99.8 4.1E-18 1.4E-22 156.5 15.8 166 87-260 8-191 (200)
9 1ijb_A VON willebrand factor; 99.8 2.4E-17 8.3E-22 152.2 19.2 169 87-261 15-192 (202)
10 1n3y_A Integrin alpha-X; alpha 99.8 8.5E-19 2.9E-23 159.8 7.6 166 87-260 11-189 (198)
11 1pt6_A Integrin alpha-1; cell 99.7 1.3E-17 4.4E-22 154.7 14.8 165 87-259 9-191 (213)
12 1rrk_A Complement factor B; BB 99.7 2.2E-17 7.7E-22 171.0 16.8 170 87-262 3-203 (497)
13 4fx5_A VON willebrand factor t 99.7 7.7E-17 2.6E-21 168.1 20.8 165 87-261 79-254 (464)
14 1atz_A VON willebrand factor; 99.7 6.6E-17 2.3E-21 147.0 17.1 162 87-257 7-177 (189)
15 1mf7_A Integrin alpha M; cell 99.7 4.5E-18 1.5E-22 155.2 9.0 166 87-260 7-185 (194)
16 4hqf_A Thrombospondin-related 99.7 2.4E-17 8.3E-22 159.8 14.2 172 82-260 20-205 (281)
17 4hqo_A Sporozoite surface prot 99.7 5.8E-17 2E-21 156.4 16.6 174 81-262 16-204 (266)
18 3n2n_F Anthrax toxin receptor 99.7 2.7E-17 9.4E-22 147.9 12.7 165 87-261 9-181 (185)
19 1jey_B KU80; double-strand DNA 99.7 1.1E-16 3.9E-21 170.4 15.9 161 87-248 9-228 (565)
20 2x31_A Magnesium-chelatase 60 99.7 3E-19 1E-23 162.1 -6.4 168 86-261 6-187 (189)
21 2odp_A Complement C2; C3/C5 co 99.7 3.3E-16 1.1E-20 163.1 14.1 169 87-261 11-210 (509)
22 3hrz_D Complement factor B; se 99.7 3.5E-16 1.2E-20 169.7 14.1 169 87-261 245-444 (741)
23 2xgg_A Microneme protein 2; A/ 99.6 2.3E-15 7.8E-20 136.1 14.2 143 87-235 19-170 (178)
24 3zqk_A VON willebrand factor; 99.6 2.7E-14 9.3E-19 131.4 14.7 162 85-261 21-190 (199)
25 1mjn_A Integrin alpha-L; rossm 99.6 2.2E-15 7.6E-20 136.4 5.4 160 87-260 4-175 (179)
26 1jey_A KU70; double-strand DNA 99.5 1.3E-13 4.6E-18 148.1 15.6 142 87-229 37-208 (609)
27 3k6s_A Integrin alpha-X; cell 99.4 4.6E-14 1.6E-18 160.6 4.0 162 87-256 132-306 (1095)
28 1yvr_A RO autoantigen, 60-kDa 99.2 2.4E-11 8.3E-16 128.5 11.5 145 86-244 369-538 (538)
29 2nvo_A RO sixty-related protei 99.0 1.7E-09 6E-14 114.4 15.1 148 82-245 361-535 (535)
30 2ww8_A RRGA, cell WALL surface 98.9 1.5E-09 5E-14 121.2 9.6 115 81-199 222-389 (893)
31 3rag_A Uncharacterized protein 98.6 6.4E-08 2.2E-12 92.6 7.9 89 87-183 136-227 (242)
32 2iue_A Pactolus I-domain; memb 98.6 2.7E-06 9.1E-11 80.0 18.3 162 87-258 5-206 (212)
33 3rag_A Uncharacterized protein 98.4 6.2E-07 2.1E-11 85.7 9.6 60 189-249 10-76 (242)
34 2nut_A Protein transport prote 98.4 7.1E-06 2.4E-10 90.4 17.4 165 86-262 133-395 (769)
35 1pcx_A Protein transport prote 98.3 2.1E-05 7.1E-10 87.2 18.8 152 86-247 188-410 (810)
36 3fcs_B Integrin beta-3; beta p 98.3 9.2E-06 3.2E-10 88.4 15.6 162 87-257 113-344 (690)
37 1m2v_B SEC24, protein transpor 98.1 4.5E-05 1.5E-09 85.5 17.5 153 86-247 304-526 (926)
38 1m2o_A SEC23, protein transpor 98.0 0.00028 9.5E-09 77.7 19.9 166 86-263 122-390 (768)
39 3k6s_B Integrin beta-2; cell r 97.9 1.4E-05 4.8E-10 86.9 8.3 155 87-251 106-326 (687)
40 3t3p_B Integrin beta-3; integr 97.9 0.00071 2.4E-08 70.3 19.5 162 87-258 113-345 (472)
41 3vi3_B Integrin beta-1; beta p 97.8 0.00077 2.6E-08 69.6 18.8 159 87-258 124-352 (454)
42 3eh1_A Protein transport prote 97.7 0.00085 2.9E-08 73.7 18.4 151 86-247 161-374 (751)
43 3v4v_B Integrin beta-7; cell a 97.5 0.00074 2.5E-08 70.5 13.2 161 87-258 134-364 (503)
44 3eh2_A Protein transport prote 97.5 0.002 6.7E-08 71.0 16.5 156 86-248 174-396 (766)
45 3efo_B SEC24 related gene fami 97.4 0.0035 1.2E-07 69.0 17.5 159 84-249 176-401 (770)
46 2dlq_A GLI-kruppel family memb 92.3 0.085 2.9E-06 42.7 3.3 87 303-405 7-118 (124)
47 2i13_A AART; DNA binding, zinc 91.2 0.032 1.1E-06 49.4 -0.5 90 303-411 49-168 (190)
48 2lt7_A Transcriptional regulat 90.7 0.15 5E-06 43.5 3.2 34 303-336 22-69 (133)
49 2dmd_A Zinc finger protein 64, 90.1 0.23 7.8E-06 38.4 3.6 73 316-406 7-88 (96)
50 1iym_A EL5; ring-H2 finger, ub 90.1 0.25 8.7E-06 34.8 3.6 47 362-412 5-51 (55)
51 1z2q_A LM5-1; membrane protein 89.8 0.34 1.2E-05 38.4 4.4 41 355-399 14-54 (84)
52 2yw8_A RUN and FYVE domain-con 89.8 0.19 6.5E-06 39.6 2.9 40 356-399 13-52 (82)
53 1x4u_A Zinc finger, FYVE domai 89.7 0.25 8.4E-06 39.1 3.5 40 356-399 8-47 (84)
54 2dlq_A GLI-kruppel family memb 89.0 0.15 5.2E-06 41.1 1.9 78 316-412 6-102 (124)
55 3t7l_A Zinc finger FYVE domain 88.9 0.22 7.5E-06 40.0 2.7 35 361-399 19-53 (90)
56 1joc_A EEA1, early endosomal a 88.7 0.22 7.5E-06 42.5 2.7 35 361-399 68-102 (125)
57 2i13_A AART; DNA binding, zinc 88.1 0.14 4.8E-06 45.1 1.1 84 303-405 77-184 (190)
58 6rxn_A Rubredoxin; electron tr 88.0 0.24 8.1E-06 35.2 2.0 24 303-326 4-39 (46)
59 2ee8_A Protein ODD-skipped-rel 87.9 0.19 6.5E-06 39.7 1.7 43 364-406 47-97 (106)
60 2djb_A Polycomb group ring fin 87.8 0.38 1.3E-05 36.1 3.3 50 362-418 15-64 (72)
61 2ect_A Ring finger protein 126 87.4 0.81 2.8E-05 34.7 5.0 50 361-415 14-63 (78)
62 3lrq_A E3 ubiquitin-protein li 87.1 0.17 5.7E-06 41.0 0.9 47 362-415 22-69 (100)
63 2ecw_A Tripartite motif-contai 87.0 0.45 1.5E-05 36.3 3.3 48 361-416 18-71 (85)
64 1x4j_A Ring finger protein 38; 86.5 0.55 1.9E-05 35.5 3.5 50 361-415 22-71 (75)
65 4ap4_A E3 ubiquitin ligase RNF 86.3 0.098 3.4E-06 43.6 -0.9 89 305-415 36-124 (133)
66 3pwf_A Rubrerythrin; non heme 86.2 0.3 1E-05 43.9 2.2 24 303-326 138-162 (170)
67 2ep4_A Ring finger protein 24; 85.9 0.64 2.2E-05 34.9 3.6 49 361-414 14-62 (74)
68 2yur_A Retinoblastoma-binding 85.8 0.8 2.7E-05 34.6 4.2 54 362-422 15-71 (74)
69 2ecm_A Ring finger and CHY zin 85.5 0.69 2.4E-05 32.4 3.4 49 362-414 5-53 (55)
70 3ztg_A E3 ubiquitin-protein li 85.3 0.73 2.5E-05 36.1 3.9 46 361-413 12-59 (92)
71 2ecv_A Tripartite motif-contai 85.3 0.83 2.8E-05 34.7 4.1 47 361-415 18-70 (85)
72 2y43_A E3 ubiquitin-protein li 84.3 0.34 1.2E-05 38.7 1.5 47 362-415 22-68 (99)
73 2ct7_A Ring finger protein 31; 84.3 0.56 1.9E-05 37.2 2.7 39 364-404 27-68 (86)
74 1wff_A Riken cDNA 2810002D23 p 84.2 0.89 3E-05 36.3 3.8 40 361-409 24-63 (85)
75 2yt9_A Zinc finger-containing 84.0 0.51 1.7E-05 36.2 2.3 43 364-406 37-90 (95)
76 1y02_A CARP2, FYVE-ring finger 83.6 0.18 6.1E-06 43.0 -0.6 46 362-411 19-64 (120)
77 2kmk_A Zinc finger protein GFI 83.6 0.12 4.2E-06 38.5 -1.4 69 318-404 2-79 (82)
78 1lko_A Rubrerythrin all-iron(I 83.4 0.4 1.4E-05 43.7 1.7 24 303-326 155-180 (191)
79 2v3b_B Rubredoxin 2, rubredoxi 82.7 0.6 2E-05 34.3 2.1 24 303-326 3-45 (55)
80 3vk6_A E3 ubiquitin-protein li 82.5 0.23 7.8E-06 41.0 -0.3 48 364-418 3-51 (101)
81 1vfy_A Phosphatidylinositol-3- 82.4 0.73 2.5E-05 35.4 2.6 32 363-398 12-43 (73)
82 1bor_A Transcription factor PM 82.4 2.3 7.9E-05 30.3 5.2 42 362-414 6-47 (56)
83 2kn9_A Rubredoxin; metalloprot 82.0 0.62 2.1E-05 36.9 2.1 24 303-326 27-69 (81)
84 2kiz_A E3 ubiquitin-protein li 81.7 1.1 3.7E-05 33.1 3.3 49 361-414 13-61 (69)
85 1wfk_A Zinc finger, FYVE domai 81.3 1 3.4E-05 36.0 3.1 47 361-411 8-61 (88)
86 2egp_A Tripartite motif-contai 81.3 1.2 4.1E-05 33.6 3.4 48 361-416 11-65 (79)
87 1chc_A Equine herpes virus-1 r 81.1 1.1 3.9E-05 32.8 3.2 46 362-414 5-50 (68)
88 2dmi_A Teashirt homolog 3; zin 80.6 1 3.5E-05 35.9 3.0 74 318-405 20-103 (115)
89 1wg2_A Zinc finger (AN1-like) 80.0 1.1 3.8E-05 33.9 2.8 39 361-409 14-52 (64)
90 1yk4_A Rubredoxin, RD; electro 80.0 0.81 2.8E-05 33.2 1.9 24 303-326 2-44 (52)
91 2d8t_A Dactylidin, ring finger 79.9 0.83 2.8E-05 34.1 2.1 46 361-414 14-59 (71)
92 2jp9_A Wilms tumor 1; DNA bind 79.6 0.43 1.5E-05 38.1 0.4 41 364-404 68-118 (119)
93 2l0b_A E3 ubiquitin-protein li 79.4 1.1 3.7E-05 35.4 2.7 48 361-413 39-86 (91)
94 3ng2_A RNF4, snurf, ring finge 79.4 0.71 2.4E-05 34.1 1.5 56 361-417 9-64 (71)
95 4ayc_A E3 ubiquitin-protein li 79.0 0.57 2E-05 40.0 1.0 44 363-414 54-97 (138)
96 4rxn_A Rubredoxin; electron tr 78.3 1 3.5E-05 33.0 2.0 24 303-326 3-45 (54)
97 1t1h_A Gspef-atpub14, armadill 78.2 1.2 4.1E-05 33.7 2.6 48 361-416 7-55 (78)
98 1e8j_A Rubredoxin; iron-sulfur 78.2 1.3 4.5E-05 32.1 2.6 24 303-326 3-45 (52)
99 1dx8_A Rubredoxin; electron tr 77.2 1.1 3.9E-05 34.4 2.1 24 303-326 7-49 (70)
100 3zyq_A Hepatocyte growth facto 76.8 1.2 4E-05 41.6 2.5 33 363-399 165-197 (226)
101 1yuz_A Nigerythrin; rubrythrin 76.7 1.1 3.8E-05 41.2 2.3 24 303-326 171-195 (202)
102 2ckl_A Polycomb group ring fin 76.5 0.88 3E-05 36.9 1.4 47 362-415 15-61 (108)
103 1jm7_A BRCA1, breast cancer ty 76.3 1.9 6.7E-05 34.7 3.5 47 362-416 21-70 (112)
104 1s24_A Rubredoxin 2; electron 76.3 1.1 3.9E-05 35.9 1.9 24 303-326 35-77 (87)
105 1dvp_A HRS, hepatocyte growth 76.2 1.3 4.4E-05 41.0 2.6 33 363-399 162-194 (220)
106 1wfp_A Zinc finger (AN1-like) 75.7 2 6.9E-05 33.4 3.2 39 361-409 24-62 (74)
107 2ea6_A Ring finger protein 4; 75.3 1.4 4.9E-05 32.1 2.2 52 361-413 14-65 (69)
108 1jm7_B BARD1, BRCA1-associated 75.3 2.7 9.3E-05 34.5 4.2 45 362-415 22-66 (117)
109 2csh_A Zinc finger protein 297 75.1 1.3 4.4E-05 35.0 2.1 41 364-404 39-87 (110)
110 2ecj_A Tripartite motif-contai 74.9 2.4 8.3E-05 29.8 3.3 42 361-410 14-58 (58)
111 2csy_A Zinc finger protein 183 74.9 1.4 4.8E-05 33.7 2.1 47 361-415 14-60 (81)
112 2rpc_A Zinc finger protein ZIC 74.8 1.6 5.3E-05 36.7 2.6 24 382-405 120-145 (155)
113 2ysj_A Tripartite motif-contai 74.2 2 6.9E-05 31.0 2.8 42 361-410 19-63 (63)
114 1x4s_A Protein FON, zinc finge 74.2 0.87 3E-05 34.0 0.7 27 290-317 12-40 (59)
115 2xeu_A Ring finger protein 4; 74.0 0.95 3.2E-05 32.5 0.9 55 362-417 3-57 (64)
116 2ecy_A TNF receptor-associated 73.8 2.9 0.0001 30.5 3.6 47 362-416 15-62 (66)
117 3fl2_A E3 ubiquitin-protein li 73.8 1.6 5.4E-05 36.3 2.4 45 363-415 53-98 (124)
118 1ubd_C Protein (YY1 zinc finge 73.6 1.4 4.9E-05 35.4 2.0 33 303-335 5-52 (124)
119 3h0g_I DNA-directed RNA polyme 73.2 5.3 0.00018 33.2 5.5 31 362-392 72-110 (113)
120 2lv2_A Insulinoma-associated p 73.2 1.9 6.5E-05 33.8 2.5 34 303-336 28-75 (85)
121 2ysl_A Tripartite motif-contai 72.9 2.7 9.4E-05 31.0 3.3 47 361-415 19-68 (73)
122 1twf_I B12.6, DNA-directed RNA 72.8 2.4 8.3E-05 35.8 3.3 31 362-392 72-110 (122)
123 4gzn_C ZFP-57, zinc finger pro 72.6 2.1 7E-05 31.3 2.5 34 303-336 4-51 (60)
124 3uk3_C Zinc finger protein 217 72.5 1.8 6E-05 29.8 2.0 33 303-335 4-50 (57)
125 2vrw_B P95VAV, VAV1, proto-onc 72.1 1.5 5.1E-05 43.8 2.1 43 361-410 356-398 (406)
126 1wfh_A Zinc finger (AN1-like) 72.0 2.6 8.9E-05 31.9 2.9 39 361-409 14-52 (64)
127 2ckl_B Ubiquitin ligase protei 72.0 1.1 3.7E-05 39.2 0.9 45 363-414 55-100 (165)
128 2gli_A Protein (five-finger GL 71.6 3.5 0.00012 34.4 4.0 76 303-405 34-123 (155)
129 1v87_A Deltex protein 2; ring- 71.6 3.7 0.00013 33.2 4.1 51 362-412 25-90 (114)
130 3l11_A E3 ubiquitin-protein li 71.5 1.4 4.7E-05 36.1 1.4 43 363-413 16-59 (115)
131 2yqq_A Zinc finger HIT domain- 71.0 1.2 4.1E-05 32.8 0.8 23 291-317 14-37 (56)
132 1tf6_A Protein (transcription 69.9 3.4 0.00012 35.9 3.7 90 303-409 42-166 (190)
133 3mpx_A FYVE, rhogef and PH dom 69.9 0.92 3.2E-05 45.6 0.0 53 356-412 369-428 (434)
134 1e4u_A Transcriptional repress 69.9 4.5 0.00015 31.2 4.0 48 361-412 10-58 (78)
135 2ecg_A Baculoviral IAP repeat- 68.9 2.6 8.9E-05 31.9 2.4 42 363-416 26-68 (75)
136 1tf6_A Protein (transcription 68.7 3.6 0.00012 35.8 3.6 91 303-412 12-144 (190)
137 1a1h_A QGSR zinc finger peptid 67.1 0.86 3E-05 34.4 -0.7 69 319-405 6-85 (90)
138 2ecl_A Ring-box protein 2; RNF 67.0 3.5 0.00012 31.7 2.8 53 361-413 14-73 (81)
139 2ee8_A Protein ODD-skipped-rel 66.3 6.9 0.00024 30.3 4.5 34 303-336 17-64 (106)
140 2lcq_A Putative toxin VAPC6; P 66.3 2.9 0.0001 36.6 2.5 26 303-328 132-159 (165)
141 1bbo_A Human enhancer-binding 65.0 3.1 0.00011 28.4 2.0 33 304-336 2-48 (57)
142 1x6e_A Zinc finger protein 24; 64.9 3.9 0.00013 29.7 2.6 34 303-336 14-61 (72)
143 2gmg_A Hypothetical protein PF 64.4 3.2 0.00011 34.4 2.2 30 303-332 67-99 (105)
144 2wbs_A Krueppel-like factor 4; 63.8 2.5 8.5E-05 31.7 1.4 69 319-405 7-88 (89)
145 2jmo_A Parkin; IBR, E3 ligase, 63.4 4.8 0.00016 31.3 3.0 43 362-408 25-74 (80)
146 2el4_A Zinc finger protein 268 62.9 3.3 0.00011 27.1 1.7 25 382-406 12-36 (46)
147 3hct_A TNF receptor-associated 62.8 1.7 6E-05 35.8 0.3 46 362-415 18-64 (118)
148 2jrp_A Putative cytoplasmic pr 62.4 2.7 9.2E-05 33.3 1.3 33 294-327 8-41 (81)
149 2ct2_A Tripartite motif protei 62.4 6.2 0.00021 30.1 3.5 49 361-413 14-65 (88)
150 2adr_A ADR1; transcription reg 62.2 3.6 0.00012 28.5 1.9 34 303-336 2-49 (60)
151 2cot_A Zinc finger protein 435 61.0 6.4 0.00022 28.8 3.2 34 303-336 18-65 (77)
152 1twf_L ABC10-alpha, DNA-direct 61.0 5.1 0.00018 30.7 2.7 24 303-326 28-54 (70)
153 1g25_A CDK-activating kinase a 61.0 4.7 0.00016 29.2 2.4 52 362-417 3-56 (65)
154 2lvu_A Zinc finger and BTB dom 65.0 1.8 6.1E-05 24.6 0.0 23 383-405 3-25 (26)
155 1x5w_A Zinc finger protein 64, 60.5 5.1 0.00018 28.8 2.6 34 303-336 9-56 (70)
156 1twf_L ABC10-alpha, DNA-direct 60.4 6.2 0.00021 30.2 3.0 27 381-412 27-53 (70)
157 1x4w_A Hypothetical protein FL 60.2 3.7 0.00013 31.3 1.7 40 361-409 14-55 (67)
158 1rik_A E6APC1 peptide; E6-bind 59.8 2.7 9.4E-05 24.1 0.8 25 382-406 2-26 (29)
159 1znf_A 31ST zinc finger from X 59.5 3.3 0.00011 23.4 1.1 24 383-406 2-25 (27)
160 2gqj_A Zinc finger protein KIA 59.5 1.8 6.2E-05 33.9 -0.1 37 303-339 24-78 (98)
161 2ctd_A Zinc finger protein 512 59.1 6.5 0.00022 30.9 3.1 34 303-336 34-81 (96)
162 2m0d_A Zinc finger and BTB dom 59.0 2.9 0.0001 24.0 0.8 25 382-406 3-27 (30)
163 1wfl_A Zinc finger protein 216 58.9 6.4 0.00022 30.6 2.8 38 362-409 25-62 (74)
164 2apo_B Ribosome biogenesis pro 58.9 5 0.00017 29.9 2.2 25 304-330 7-31 (60)
165 2m0e_A Zinc finger and BTB dom 58.3 1.7 5.9E-05 24.8 -0.4 23 383-405 3-25 (29)
166 2lce_A B-cell lymphoma 6 prote 57.5 4.5 0.00016 29.4 1.8 34 303-336 17-64 (74)
167 2kvf_A Zinc finger and BTB dom 57.2 3.9 0.00013 23.4 1.1 24 382-405 3-26 (28)
168 3mjh_B Early endosome antigen 57.2 3.9 0.00013 27.1 1.2 8 303-310 5-12 (34)
169 2epw_A Zinc finger protein 268 57.0 3.7 0.00013 26.8 1.2 24 382-405 12-35 (46)
170 2ytn_A Zinc finger protein 347 57.0 4.5 0.00015 26.4 1.6 24 382-405 12-35 (46)
171 2d9h_A Zinc finger protein 692 56.5 6.4 0.00022 28.8 2.5 39 303-341 7-64 (78)
172 2em0_A Zinc finger protein 224 55.8 3.9 0.00013 26.8 1.1 24 382-405 12-35 (46)
173 2jp9_A Wilms tumor 1; DNA bind 55.8 1.5 5.1E-05 34.8 -1.3 77 317-412 6-104 (119)
174 1pft_A TFIIB, PFTFIIBN; N-term 55.5 2.8 9.4E-05 29.5 0.3 25 303-327 5-34 (50)
175 2ytg_A ZFP-95, zinc finger pro 55.4 5 0.00017 26.2 1.6 24 382-405 12-35 (46)
176 2eop_A Zinc finger protein 268 55.4 4.9 0.00017 26.1 1.5 24 382-405 12-35 (46)
177 3ky9_A Proto-oncogene VAV; cal 55.0 5.1 0.00018 42.1 2.4 56 336-411 516-571 (587)
178 2ema_A Zinc finger protein 347 54.8 3.7 0.00013 26.9 0.8 24 382-405 12-35 (46)
179 2ea5_A Cell growth regulator w 54.5 9.7 0.00033 28.3 3.2 44 361-416 14-58 (68)
180 2eq0_A Zinc finger protein 347 54.3 5.4 0.00019 26.0 1.6 24 382-405 12-35 (46)
181 3dpl_R Ring-box protein 1; ubi 53.8 2.2 7.6E-05 35.1 -0.5 53 361-413 36-98 (106)
182 2lvr_A Zinc finger and BTB dom 58.8 2.8 9.4E-05 24.3 0.0 25 382-406 3-27 (30)
183 2ecn_A Ring finger protein 141 53.6 2.4 8.1E-05 31.2 -0.4 45 361-414 14-58 (70)
184 2lvt_A Zinc finger and BTB dom 58.6 2.8 9.5E-05 24.2 0.0 24 383-406 3-26 (29)
185 2elz_A Zinc finger protein 224 53.3 4.4 0.00015 26.5 1.0 24 382-405 12-35 (46)
186 2em5_A ZFP-95, zinc finger pro 53.2 6 0.00021 25.8 1.7 24 382-405 12-35 (46)
187 2csz_A Synaptotagmin-like prot 53.1 2.2 7.7E-05 33.3 -0.6 48 360-410 23-70 (76)
188 2fc7_A ZZZ3 protein; structure 53.0 6.5 0.00022 30.9 2.1 31 362-398 21-56 (82)
189 2el6_A Zinc finger protein 268 52.9 5.1 0.00017 26.2 1.3 24 382-405 12-35 (46)
190 2epz_A Zinc finger protein 28 52.8 5.7 0.00019 25.9 1.5 24 382-405 12-35 (46)
191 2ene_A Zinc finger protein 347 52.7 6.3 0.00022 25.7 1.8 24 382-405 12-35 (46)
192 2drp_A Protein (tramtrack DNA- 52.7 8 0.00027 27.2 2.4 33 303-335 10-58 (66)
193 1paa_A Yeast transcription fac 52.4 5.5 0.00019 22.9 1.3 24 383-406 3-27 (30)
194 2ct1_A Transcriptional repress 52.4 8.2 0.00028 28.2 2.5 38 303-340 15-70 (77)
195 2ebt_A Krueppel-like factor 5; 52.4 2.9 9.8E-05 32.1 -0.1 67 321-405 21-98 (100)
196 3cw1_L U1 small nuclear ribonu 52.4 3.1 0.0001 32.6 0.1 16 390-405 3-19 (77)
197 2c2l_A CHIP, carboxy terminus 52.2 6.3 0.00022 36.5 2.3 46 362-415 208-254 (281)
198 2ep0_A Zinc finger protein 28 52.2 6.4 0.00022 25.6 1.7 24 382-405 12-35 (46)
199 2ytq_A Zinc finger protein 268 52.1 6.2 0.00021 25.7 1.6 24 382-405 12-35 (46)
200 1z6u_A NP95-like ring finger p 51.8 7 0.00024 33.8 2.3 45 363-415 79-124 (150)
201 2kfq_A FP1; protein, de novo p 51.8 3.3 0.00011 25.0 0.2 24 383-406 3-26 (32)
202 2em9_A Zinc finger protein 224 51.8 5.8 0.0002 25.8 1.4 24 382-405 12-35 (46)
203 2kvg_A Zinc finger and BTB dom 51.6 4.2 0.00014 23.3 0.6 24 382-405 3-26 (27)
204 1vd4_A Transcription initiatio 51.6 5 0.00017 28.6 1.1 28 303-330 14-52 (62)
205 2en1_A Zinc finger protein 224 51.6 4.6 0.00016 26.4 0.9 24 382-405 12-35 (46)
206 2qip_A Protein of unknown func 51.5 12 0.00042 32.5 3.9 61 166-238 92-154 (165)
207 2en8_A Zinc finger protein 224 50.9 6.6 0.00023 25.5 1.6 24 382-405 12-35 (46)
208 2dlk_A Novel protein; ZF-C2H2 50.8 4.2 0.00014 29.7 0.7 55 320-392 12-78 (79)
209 2ysp_A Zinc finger protein 224 50.6 5.4 0.00018 26.0 1.1 24 382-405 12-35 (46)
210 1zbd_B Rabphilin-3A; G protein 50.6 8 0.00027 33.2 2.5 39 361-402 54-92 (134)
211 2vje_B MDM4 protein; proto-onc 50.5 3.9 0.00013 30.0 0.4 47 362-414 7-54 (63)
212 1llm_C Chimera of ZIF23-GCN4; 50.4 8.7 0.0003 28.8 2.5 34 303-336 3-50 (88)
213 2eoe_A Zinc finger protein 347 50.1 4 0.00014 26.6 0.4 24 382-405 12-35 (46)
214 2kmk_A Zinc finger protein GFI 50.0 9.5 0.00033 27.7 2.6 33 303-335 29-75 (82)
215 2yt9_A Zinc finger-containing 49.6 11 0.00038 28.4 3.0 34 303-336 35-84 (95)
216 2kvh_A Zinc finger and BTB dom 49.5 4.1 0.00014 23.1 0.3 24 382-405 3-26 (27)
217 3hcs_A TNF receptor-associated 49.5 3.9 0.00013 35.7 0.3 46 362-415 18-64 (170)
218 2em7_A Zinc finger protein 224 49.5 6.6 0.00023 25.6 1.4 24 382-405 12-35 (46)
219 3j21_g 50S ribosomal protein L 49.3 10 0.00036 27.2 2.5 24 303-326 14-37 (51)
220 2emf_A Zinc finger protein 484 49.0 7.8 0.00027 25.2 1.8 24 382-405 12-35 (46)
221 2wbt_A B-129; zinc finger; 2.7 49.0 11 0.00038 30.3 3.1 34 303-336 74-119 (129)
222 1x5w_A Zinc finger protein 64, 48.9 5.7 0.0002 28.5 1.1 21 382-402 37-57 (70)
223 2adr_A ADR1; transcription reg 48.6 6.2 0.00021 27.2 1.2 42 364-405 4-54 (60)
224 2m0f_A Zinc finger and BTB dom 48.6 2.7 9.3E-05 24.0 -0.6 24 382-405 2-25 (29)
225 2epr_A POZ-, at HOOK-, and zin 48.4 6.2 0.00021 26.1 1.2 29 382-410 12-46 (48)
226 2eml_A Zinc finger protein 28 48.4 6.1 0.00021 25.7 1.1 24 382-405 12-35 (46)
227 2zet_C Melanophilin; complex, 48.4 7 0.00024 34.4 1.8 37 361-400 67-103 (153)
228 2eme_A Zinc finger protein 473 48.1 6.5 0.00022 25.5 1.2 24 382-405 12-35 (46)
229 2ely_A Zinc finger protein 224 48.0 4.9 0.00017 26.3 0.5 24 382-405 12-35 (46)
230 2elv_A Zinc finger protein 406 47.7 6.5 0.00022 24.0 1.1 25 382-406 9-33 (36)
231 2dmd_A Zinc finger protein 64, 47.6 11 0.00037 28.4 2.6 34 303-336 36-83 (96)
232 2csh_A Zinc finger protein 297 47.4 15 0.00052 28.5 3.6 33 303-336 10-56 (110)
233 2gmg_A Hypothetical protein PF 47.4 7.5 0.00026 32.2 1.7 26 364-392 69-94 (105)
234 2ytr_A Zinc finger protein 347 47.4 6.5 0.00022 25.5 1.1 24 382-405 12-35 (46)
235 1p7a_A BF3, BKLF, kruppel-like 47.3 5 0.00017 24.7 0.5 24 382-405 11-34 (37)
236 1a1h_A QGSR zinc finger peptid 46.9 11 0.00037 28.0 2.5 33 303-335 34-80 (90)
237 1ard_A Yeast transcription fac 46.9 9.2 0.00031 21.6 1.7 20 317-336 2-21 (29)
238 2ytd_A Zinc finger protein 473 46.9 4.2 0.00014 26.6 0.1 24 382-405 12-35 (46)
239 2rpc_A Zinc finger protein ZIC 46.6 13 0.00045 30.8 3.2 85 316-412 24-130 (155)
240 2jne_A Hypothetical protein YF 46.4 5.1 0.00018 32.7 0.5 34 293-327 37-71 (101)
241 2e5r_A Dystrobrevin alpha; ZZ 45.9 11 0.00037 28.1 2.3 31 362-398 11-43 (63)
242 1srk_A Zinc finger protein ZFP 45.7 5.9 0.0002 24.0 0.6 25 382-406 7-31 (35)
243 1qxf_A GR2, 30S ribosomal prot 45.6 7.2 0.00025 29.6 1.2 27 305-331 9-40 (66)
244 4a0k_B E3 ubiquitin-protein li 45.0 2.1 7.2E-05 36.0 -2.1 52 361-412 47-108 (117)
245 1wjp_A Zinc finger protein 295 44.8 3.5 0.00012 32.3 -0.7 25 382-406 69-94 (107)
246 2emk_A Zinc finger protein 28 44.7 4.7 0.00016 26.4 0.0 24 382-405 12-35 (46)
247 1klr_A Zinc finger Y-chromosom 44.5 12 0.0004 21.2 1.9 20 317-336 2-21 (30)
248 2ytk_A Zinc finger protein 347 44.3 5 0.00017 26.2 0.1 24 382-405 12-35 (46)
249 2ep2_A Zinc finger protein 484 44.3 8.7 0.0003 24.9 1.4 24 382-405 12-35 (46)
250 2aus_D NOP10, ribosome biogene 44.2 9.2 0.00031 28.5 1.6 25 304-330 6-30 (60)
251 2enc_A Zinc finger protein 224 43.8 7 0.00024 25.4 0.8 24 382-405 12-35 (46)
252 1rmd_A RAG1; V(D)J recombinati 43.8 7.6 0.00026 31.5 1.2 46 362-415 23-69 (116)
253 2yqq_A Zinc finger HIT domain- 43.7 9.9 0.00034 27.9 1.7 34 362-404 12-45 (56)
254 2els_A Zinc finger protein 406 43.6 3.9 0.00013 25.1 -0.5 24 382-405 9-32 (36)
255 4gnr_A ABC transporter substra 43.6 30 0.001 32.5 5.6 62 144-218 13-74 (353)
256 1x6h_A Transcriptional repress 43.3 14 0.00047 27.1 2.5 19 318-336 16-34 (86)
257 2y1n_A E3 ubiquitin-protein li 43.3 7.2 0.00024 39.4 1.1 46 362-415 332-378 (389)
258 2epx_A Zinc finger protein 28 43.1 10 0.00036 24.5 1.6 24 382-405 12-36 (47)
259 1z60_A TFIIH basal transcripti 43.1 6.1 0.00021 29.3 0.5 19 296-314 23-41 (59)
260 2ytj_A Zinc finger protein 484 42.9 7.3 0.00025 25.3 0.8 24 382-405 12-35 (46)
261 2ctu_A Zinc finger protein 483 42.8 3.8 0.00013 29.2 -0.7 33 303-335 18-57 (73)
262 1x4s_A Protein FON, zinc finge 41.6 13 0.00043 27.6 2.0 33 362-402 11-46 (59)
263 1x6e_A Zinc finger protein 24; 41.3 6.8 0.00023 28.3 0.5 42 363-404 15-64 (72)
264 2e72_A POGO transposable eleme 41.2 9.5 0.00033 27.1 1.2 13 380-392 10-22 (49)
265 2kdx_A HYPA, hydrogenase/ureas 41.2 14 0.00048 30.6 2.5 24 303-326 73-99 (119)
266 4ic3_A E3 ubiquitin-protein li 41.1 9.6 0.00033 28.6 1.3 42 362-415 24-66 (74)
267 2kre_A Ubiquitin conjugation f 40.7 16 0.00055 29.3 2.7 48 361-416 28-75 (100)
268 1f2i_G Fusion of N-terminal 17 40.7 16 0.00053 26.2 2.4 34 303-336 19-68 (73)
269 2eod_A TNF receptor-associated 40.3 12 0.0004 26.6 1.7 34 303-336 10-56 (66)
270 1njq_A Superman protein; zinc- 39.6 8.9 0.0003 23.9 0.8 25 382-406 6-30 (39)
271 2pd2_A Hypothetical protein ST 39.6 39 0.0013 26.7 4.9 57 169-228 12-71 (108)
272 2epq_A POZ-, at HOOK-, and zin 39.5 11 0.00036 24.4 1.2 29 382-410 10-44 (45)
273 1tot_A CREB-binding protein; z 39.0 10 0.00034 27.2 1.1 30 362-398 6-36 (52)
274 2eos_A B-cell lymphoma 6 prote 38.7 11 0.00038 23.8 1.2 25 382-406 11-35 (42)
275 1rim_A E6APC2 peptide; E6-bind 38.5 15 0.00051 22.1 1.7 20 317-336 2-21 (33)
276 2cot_A Zinc finger protein 435 38.4 12 0.0004 27.3 1.4 45 362-406 18-70 (77)
277 2emh_A Zinc finger protein 484 38.1 15 0.0005 23.8 1.7 22 382-403 12-33 (46)
278 1wim_A KIAA0161 protein; ring 38.0 10 0.00036 29.6 1.1 47 362-413 5-61 (94)
279 2emp_A Zinc finger protein 347 37.8 16 0.00055 23.5 1.9 22 382-403 12-33 (46)
280 2eoo_A ZFP-95, zinc finger pro 37.5 16 0.00055 23.6 1.9 22 382-403 12-33 (46)
281 1nj3_A NPL4; NZF domain, rubre 37.4 26 0.0009 22.0 2.8 25 303-327 6-30 (31)
282 2emy_A Zinc finger protein 268 37.3 16 0.00054 23.6 1.8 24 382-405 12-35 (46)
283 2yu8_A Zinc finger protein 347 37.3 18 0.00062 23.3 2.1 23 382-404 12-34 (46)
284 2ej4_A Zinc finger protein ZIC 37.3 12 0.00041 28.2 1.4 57 319-405 27-85 (95)
285 2vje_A E3 ubiquitin-protein li 37.3 12 0.0004 27.4 1.2 48 362-415 8-56 (64)
286 3j20_W 30S ribosomal protein S 37.0 12 0.00042 28.1 1.3 27 305-331 17-48 (63)
287 2yso_A ZFP-95, zinc finger pro 36.9 16 0.00056 23.5 1.9 23 382-404 12-34 (46)
288 2em8_A Zinc finger protein 224 36.9 17 0.00058 23.5 1.9 29 382-410 12-46 (46)
289 2lt7_A Transcriptional regulat 36.8 17 0.00057 30.4 2.3 34 303-336 50-97 (133)
290 2elq_A Zinc finger protein 406 36.8 12 0.00041 22.7 1.1 20 317-336 9-28 (36)
291 2eoq_A Zinc finger protein 224 36.7 15 0.00052 23.7 1.6 24 382-405 12-35 (46)
292 2ab3_A ZNF29; zinc finger prot 36.7 7.7 0.00026 22.0 0.1 23 383-405 3-27 (29)
293 1y7p_A Hypothetical protein AF 36.6 51 0.0017 30.7 5.7 56 164-229 127-182 (223)
294 2elt_A Zinc finger protein 406 36.4 6.1 0.00021 24.0 -0.4 24 382-405 9-32 (36)
295 2ytb_A Zinc finger protein 32; 36.4 12 0.00041 23.5 1.0 25 382-406 11-35 (42)
296 2enh_A Zinc finger protein 28 36.4 13 0.00044 24.1 1.2 25 382-406 12-36 (46)
297 2enf_A Zinc finger protein 347 36.4 12 0.0004 24.3 1.0 25 382-406 12-36 (46)
298 1ubd_C Protein (YY1 zinc finge 36.2 25 0.00087 27.7 3.3 77 317-412 5-102 (124)
299 2lcq_A Putative toxin VAPC6; P 36.0 12 0.00042 32.5 1.4 26 362-391 132-157 (165)
300 1x4v_A Hypothetical protein LO 35.7 22 0.00075 26.6 2.5 38 362-409 12-51 (63)
301 2yts_A Zinc finger protein 484 35.6 13 0.00044 24.0 1.2 25 382-406 12-36 (46)
302 2yu4_A E3 SUMO-protein ligase 35.5 8.9 0.0003 30.3 0.3 44 362-412 7-58 (94)
303 2emm_A ZFP-95, zinc finger pro 35.4 18 0.0006 23.3 1.8 24 382-405 12-35 (46)
304 2ept_A Zinc finger protein 32; 35.3 14 0.00047 23.2 1.2 25 382-406 10-34 (41)
305 2lv2_A Insulinoma-associated p 35.3 13 0.00044 28.9 1.3 43 363-405 29-80 (85)
306 2elx_A Zinc finger protein 406 34.6 14 0.00048 22.0 1.1 20 317-336 7-26 (35)
307 2kdx_A HYPA, hydrogenase/ureas 34.4 24 0.00082 29.2 2.9 27 381-413 72-99 (119)
308 2kr4_A Ubiquitin conjugation f 34.3 16 0.00054 28.3 1.6 47 361-415 13-59 (85)
309 3iz6_X 40S ribosomal protein S 34.2 20 0.00068 28.5 2.2 27 304-330 37-68 (86)
310 1l1s_A Hypothetical protein MT 34.0 43 0.0015 26.8 4.4 56 169-227 17-75 (113)
311 3k1l_B Fancl; UBC, ring, RWD, 34.0 29 0.00099 34.7 3.8 50 361-412 307-369 (381)
312 3knv_A TNF receptor-associated 33.9 6.4 0.00022 33.7 -0.8 43 362-412 31-74 (141)
313 2eoy_A Zinc finger protein 473 33.9 16 0.00055 23.6 1.4 25 382-406 12-36 (46)
314 3iuf_A Zinc finger protein UBI 33.8 12 0.00042 24.9 0.8 25 382-406 7-32 (48)
315 2eq4_A Zinc finger protein 224 33.7 18 0.0006 23.3 1.6 24 382-405 12-35 (46)
316 2em2_A Zinc finger protein 28 33.5 9.2 0.00031 24.9 0.1 24 382-405 12-35 (46)
317 2emg_A Zinc finger protein 484 33.5 13 0.00045 24.0 0.9 25 382-406 12-36 (46)
318 4ap4_A E3 ubiquitin ligase RNF 33.5 14 0.00047 30.1 1.2 51 362-413 7-57 (133)
319 2elr_A Zinc finger protein 406 33.2 19 0.00065 21.5 1.6 21 316-336 8-28 (36)
320 2ct1_A Transcriptional repress 33.1 20 0.00067 26.0 1.9 53 315-404 13-67 (77)
321 2en6_A Zinc finger protein 268 33.1 16 0.00054 23.6 1.3 22 382-403 12-33 (46)
322 2emi_A Zinc finger protein 484 33.0 12 0.00042 24.2 0.7 25 382-406 12-36 (46)
323 2em6_A Zinc finger protein 224 32.8 14 0.00049 23.9 1.0 25 382-406 12-36 (46)
324 2epv_A Zinc finger protein 268 32.4 12 0.00042 24.0 0.6 25 382-406 12-36 (44)
325 2epu_A Zinc finger protein 32; 32.4 12 0.00041 24.1 0.5 25 382-406 12-36 (45)
326 3f2b_A DNA-directed DNA polyme 32.4 20 0.0007 40.6 2.7 26 303-328 502-538 (1041)
327 2eon_A ZFP-95, zinc finger pro 32.3 16 0.00056 23.6 1.2 25 382-406 12-36 (46)
328 2ytf_A Zinc finger protein 268 32.2 14 0.00048 23.8 0.9 25 382-406 12-36 (46)
329 2ct0_A Non-SMC element 1 homol 32.1 65 0.0022 24.5 4.8 45 362-414 15-62 (74)
330 2elp_A Zinc finger protein 406 32.0 18 0.00062 22.0 1.3 19 317-335 9-28 (37)
331 2yu5_A Zinc finger protein 473 31.4 13 0.00044 23.8 0.6 24 382-405 12-35 (44)
332 3u5c_b RP61, YS20, 40S ribosom 31.3 21 0.00071 28.2 1.8 26 305-330 36-66 (82)
333 2yte_A Zinc finger protein 473 31.3 21 0.00072 22.3 1.6 21 316-336 9-29 (42)
334 1wik_A Thioredoxin-like protei 31.3 1.8E+02 0.0061 22.7 7.7 36 206-241 32-67 (109)
335 2eof_A Zinc finger protein 268 31.3 11 0.00038 24.0 0.2 25 382-406 12-36 (44)
336 1m3v_A FLIN4, fusion of the LI 31.2 16 0.00056 30.0 1.3 12 317-328 5-16 (122)
337 2elm_A Zinc finger protein 406 31.1 11 0.00039 23.2 0.2 24 382-405 9-33 (37)
338 2emb_A Zinc finger protein 473 31.0 15 0.00051 23.5 0.8 25 382-406 12-36 (44)
339 1sp2_A SP1F2; zinc finger, tra 30.9 16 0.00055 21.2 0.9 24 383-406 3-28 (31)
340 4ayb_P DNA-directed RNA polyme 30.9 22 0.00075 25.2 1.7 26 303-328 3-34 (48)
341 1mio_B Nitrogenase molybdenum 30.8 3.1E+02 0.01 27.5 11.1 90 189-285 312-416 (458)
342 2eps_A POZ-, at HOOK-, and zin 30.8 26 0.00087 23.7 2.1 31 382-412 12-49 (54)
343 2yrj_A Zinc finger protein 473 30.7 17 0.00058 23.3 1.1 25 382-406 12-36 (46)
344 2jun_A Midline-1; B-BOX, TRIM, 30.5 17 0.00058 28.6 1.2 36 362-402 3-38 (101)
345 2ytp_A Zinc finger protein 484 30.4 17 0.0006 23.4 1.1 25 382-406 12-36 (46)
346 2emx_A Zinc finger protein 268 30.3 26 0.00089 22.2 2.0 23 382-404 10-32 (44)
347 2yth_A Zinc finger protein 224 30.3 15 0.00052 23.7 0.8 25 382-406 12-36 (46)
348 2gli_A Protein (five-finger GL 30.2 48 0.0016 27.1 4.1 70 316-403 66-151 (155)
349 1wys_A Riken cDNA 2310008M20 p 30.2 17 0.00059 28.2 1.1 39 362-410 14-54 (75)
350 2xzm_6 RPS27E; ribosome, trans 30.2 18 0.00061 28.5 1.2 27 305-331 34-65 (81)
351 2eoj_A Zinc finger protein 268 30.2 13 0.00044 23.7 0.4 25 382-406 12-36 (44)
352 2yti_A Zinc finger protein 347 30.1 14 0.00049 23.8 0.6 25 382-406 12-36 (46)
353 1zfd_A SWI5; DNA binding motif 29.5 16 0.00055 21.3 0.7 25 382-406 3-29 (32)
354 2eq1_A Zinc finger protein 347 29.5 16 0.00055 23.5 0.8 25 382-406 12-36 (46)
355 2ytt_A Zinc finger protein 473 29.5 22 0.00074 23.0 1.4 23 382-404 12-34 (46)
356 4gzn_C ZFP-57, zinc finger pro 29.1 16 0.00054 26.4 0.8 25 382-406 32-56 (60)
357 1wfe_A Riken cDNA 2310008M20 p 29.1 30 0.001 27.4 2.5 39 361-409 24-64 (86)
358 2k0a_A PRE-mRNA-splicing facto 29.0 18 0.00062 29.8 1.1 29 290-326 9-38 (109)
359 2dip_A Zinc finger SWIM domain 29.0 19 0.00066 29.2 1.3 29 362-396 31-61 (98)
360 2ent_A Krueppel-like factor 15 28.9 24 0.00083 22.7 1.6 24 382-405 12-37 (48)
361 2ep3_A Zinc finger protein 484 28.9 19 0.00066 23.1 1.1 25 382-406 12-36 (46)
362 2eq2_A Zinc finger protein 347 28.8 14 0.00049 23.8 0.4 25 382-406 12-36 (46)
363 3mkr_B Coatomer subunit alpha; 28.8 23 0.0008 34.7 2.1 30 303-332 278-309 (320)
364 2epc_A Zinc finger protein 32; 28.7 13 0.00046 23.3 0.3 24 382-405 11-34 (42)
365 2elo_A Zinc finger protein 406 28.6 20 0.0007 21.6 1.1 20 317-336 9-28 (37)
366 2el5_A Zinc finger protein 268 28.3 16 0.00056 22.9 0.7 25 382-406 10-34 (42)
367 2en7_A Zinc finger protein 268 28.1 25 0.00084 22.2 1.5 21 316-336 11-31 (44)
368 2ytm_A Zinc finger protein 28 27.9 24 0.00081 22.8 1.4 22 382-403 12-33 (46)
369 1wgm_A Ubiquitin conjugation f 27.8 33 0.0011 27.3 2.6 46 362-415 22-68 (98)
370 1wd2_A Ariadne-1 protein homol 27.5 33 0.0011 25.1 2.3 35 362-398 6-42 (60)
371 2eq3_A Zinc finger protein 347 27.3 15 0.00052 23.6 0.3 25 382-406 12-36 (46)
372 3t6p_A Baculoviral IAP repeat- 27.2 30 0.001 34.1 2.6 41 362-414 295-336 (345)
373 1fv5_A First zinc finger of U- 26.7 23 0.00078 23.0 1.1 22 315-336 6-27 (36)
374 1wg2_A Zinc finger (AN1-like) 26.6 26 0.0009 26.3 1.6 22 293-316 20-41 (64)
375 3mv2_A Coatomer subunit alpha; 26.4 27 0.00093 34.4 2.1 42 290-331 270-317 (325)
376 1dl6_A Transcription factor II 26.4 25 0.00085 25.6 1.4 25 304-328 12-41 (58)
377 1jzt_A Hypothetical 27.5 kDa p 26.3 1.2E+02 0.004 28.2 6.5 54 190-245 59-117 (246)
378 3nw0_A Non-structural maintena 26.1 50 0.0017 30.7 3.8 44 362-412 180-225 (238)
379 3h5l_A Putative branched-chain 25.6 1.2E+02 0.004 29.2 6.6 6 145-150 21-26 (419)
380 2lri_C Autoimmune regulator; Z 25.6 77 0.0026 23.5 4.1 50 361-418 11-64 (66)
381 2xdq_A Light-independent proto 25.5 3.2E+02 0.011 27.2 10.1 77 206-283 328-416 (460)
382 3bcv_A Putative glycosyltransf 25.2 3.1E+02 0.01 23.6 8.9 68 189-260 34-109 (240)
383 1q0q_A 1-deoxy-D-xylulose 5-ph 24.8 2.6E+02 0.0088 28.2 8.9 62 191-257 10-74 (406)
384 2eov_A Zinc finger protein 484 24.7 33 0.0011 21.9 1.7 21 316-336 11-31 (46)
385 4grd_A N5-CAIR mutase, phospho 24.7 2.7E+02 0.0091 24.8 8.0 77 187-265 10-93 (173)
386 2i5o_A DNA polymerase ETA; zin 24.6 26 0.00088 23.7 1.1 11 303-313 9-19 (39)
387 2zjr_Z 50S ribosomal protein L 24.6 29 0.001 25.6 1.5 21 303-325 30-51 (60)
388 1jx7_A Hypothetical protein YC 24.6 75 0.0026 25.0 4.2 63 164-229 12-83 (117)
389 3h0g_L DNA-directed RNA polyme 24.5 35 0.0012 25.5 1.9 25 303-327 21-48 (63)
390 3b08_B Ranbp-type and C3HC4-ty 24.4 34 0.0012 25.7 1.8 28 303-330 8-35 (64)
391 3na7_A HP0958; flagellar bioge 24.4 14 0.00049 34.6 -0.3 31 362-392 198-232 (256)
392 3u50_C Telomerase-associated p 24.3 24 0.0008 31.6 1.1 29 364-397 44-72 (172)
393 2en3_A ZFP-95, zinc finger pro 24.2 28 0.00096 22.3 1.2 20 317-336 12-31 (46)
394 2ctd_A Zinc finger protein 512 24.2 33 0.0011 26.7 1.8 43 363-405 35-86 (96)
395 3jyw_9 60S ribosomal protein L 24.2 35 0.0012 26.3 1.9 26 303-328 26-55 (72)
396 1wfh_A Zinc finger (AN1-like) 24.1 31 0.0011 25.9 1.6 22 293-316 20-41 (64)
397 2eou_A Zinc finger protein 473 23.7 35 0.0012 21.6 1.6 21 316-336 11-31 (44)
398 3o70_A PHD finger protein 13; 23.7 34 0.0012 25.6 1.8 61 338-411 2-65 (68)
399 2eoh_A Zinc finger protein 28 23.6 35 0.0012 21.8 1.7 21 316-336 11-31 (46)
400 3mvn_A UDP-N-acetylmuramate:L- 23.5 1.3E+02 0.0044 25.6 5.8 31 233-263 108-138 (163)
401 2pv0_B DNA (cytosine-5)-methyl 23.4 20 0.0007 36.1 0.6 46 361-414 92-149 (386)
402 2jny_A Uncharacterized BCR; st 23.3 24 0.00082 26.7 0.8 23 304-326 11-37 (67)
403 1vq8_Z 50S ribosomal protein L 23.3 22 0.00077 28.0 0.7 26 303-328 27-56 (83)
404 2ep1_A Zinc finger protein 484 23.3 35 0.0012 21.7 1.6 21 316-336 11-31 (46)
405 1wep_A PHF8; structural genomi 23.0 99 0.0034 23.4 4.4 55 361-420 11-70 (79)
406 3cc2_Z 50S ribosomal protein L 23.0 26 0.0009 29.4 1.0 26 303-328 60-89 (116)
407 2yto_A Zinc finger protein 484 23.0 29 0.001 22.3 1.2 20 317-336 12-31 (46)
408 2d1p_A TUSD, hypothetical UPF0 22.9 2.5E+02 0.0087 23.6 7.5 61 163-228 22-94 (140)
409 2en2_A B-cell lymphoma 6 prote 22.9 28 0.00096 21.7 1.0 20 317-336 11-30 (42)
410 3au8_A 1-deoxy-D-xylulose 5-ph 22.8 2.5E+02 0.0087 28.9 8.5 60 193-257 80-145 (488)
411 2o8n_A APOA-I binding protein; 22.6 1.1E+02 0.0038 28.9 5.6 53 190-244 80-136 (265)
412 2em3_A Zinc finger protein 28 22.5 30 0.001 22.2 1.1 20 317-336 12-31 (46)
413 1wfp_A Zinc finger (AN1-like) 22.4 34 0.0012 26.4 1.5 22 293-316 30-51 (74)
414 1q1a_A HST2 protein; ternary c 22.4 69 0.0024 30.5 4.1 34 291-327 127-173 (289)
415 2emj_A Zinc finger protein 28 22.3 30 0.001 22.2 1.1 20 317-336 12-31 (46)
416 3ipc_A ABC transporter, substr 22.2 1.5E+02 0.0051 27.5 6.4 15 169-183 21-35 (356)
417 2ko5_A Ring finger protein Z; 22.0 19 0.00065 29.3 -0.0 33 289-327 39-71 (99)
418 2eow_A Zinc finger protein 347 21.9 31 0.0011 22.0 1.1 20 317-336 12-31 (46)
419 2en9_A Zinc finger protein 28 21.6 41 0.0014 21.5 1.7 21 316-336 11-31 (46)
420 2j7j_A Transcription factor II 21.5 53 0.0018 23.5 2.5 32 304-335 2-51 (85)
421 2js4_A UPF0434 protein BB2007; 21.5 27 0.00093 26.5 0.8 23 304-326 9-35 (70)
422 3a9j_C Mitogen-activated prote 21.5 64 0.0022 20.5 2.5 24 303-326 8-31 (34)
423 2yho_A E3 ubiquitin-protein li 21.4 23 0.00079 27.0 0.4 40 362-413 18-58 (79)
424 3nrc_A Enoyl-[acyl-carrier-pro 20.9 2.3E+02 0.008 25.7 7.4 50 209-258 43-95 (280)
425 2eox_A Zinc finger protein 473 20.8 29 0.001 21.9 0.8 20 317-336 12-31 (44)
426 2eom_A ZFP-95, zinc finger pro 20.8 43 0.0015 21.4 1.7 21 316-336 11-31 (46)
427 4fgs_A Probable dehydrogenase 20.7 3.3E+02 0.011 25.4 8.5 63 189-258 28-95 (273)
428 2emz_A ZFP-95, zinc finger pro 20.7 44 0.0015 21.3 1.7 21 316-336 11-31 (46)
429 1pq4_A Periplasmic binding pro 20.6 1.2E+02 0.0041 28.7 5.4 44 204-247 223-266 (291)
430 2k4x_A 30S ribosomal protein S 20.6 22 0.00077 25.7 0.1 27 303-329 18-48 (55)
431 1qyp_A RNA polymerase II; tran 20.1 35 0.0012 24.4 1.1 30 363-392 16-53 (57)
No 1
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5e-28 Score=224.86 Aligned_cols=172 Identities=15% Similarity=0.234 Sum_probs=144.6
Q ss_pred cceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhhhhCC
Q 014440 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC 164 (424)
Q Consensus 85 iR~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~~~~~ 164 (424)
++.+||+||+|+||.+.|+.||||+++++++..|+.+++++||.+++|||+|+++.|++++|+|.|+..+...|.+ +.+
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~-l~~ 80 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHD-LPV 80 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTT-CCC
T ss_pred ceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHc-CCC
Confidence 4689999999999999999999999999999999999999999999999999644699999999999999999987 478
Q ss_pred CCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecchH---HHHHHHHHHh
Q 014440 165 SGDSSIQNALDLVHGLLNQIPSYGHR-EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM---FICKHLCQET 240 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L~~~p~~~~r-eILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e~---~iLq~iA~~T 240 (424)
.|+|++++||++|...|++.+.+..+ +|||++++..+.++.++.++++.+++.||+|+|||+|++. . |+++|+.+
T Consensus 81 ~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 81 RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 89999999999999999997655444 5666665444567888899999999999999999999875 6 99999996
Q ss_pred C----CEEEEecCh-hhHHHHHH
Q 014440 241 G----GTYSVALDE-SHSKELIL 258 (424)
Q Consensus 241 G----G~Y~~~~d~-~~L~~lL~ 258 (424)
+ +.|+..... ..|.+.|.
T Consensus 160 n~~~~s~~~~~~~~~~~l~d~~~ 182 (192)
T 2x5n_A 160 NSSDSCHLVSIPPSPQLLSDLVN 182 (192)
T ss_dssp CSTTCCEEEEECCCSSCHHHHHH
T ss_pred cCCCceEEEEecCcchhHHHHHh
Confidence 5 345543333 24666554
No 2
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.5e-26 Score=219.98 Aligned_cols=172 Identities=13% Similarity=0.159 Sum_probs=148.0
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhhhhCCCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSG 166 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~~~~~~G 166 (424)
-+||+||+|.||++.|+.||||++++.++..|++.++++||.++||||+|++..+.++.|+|.|...++.+|..+ .+.|
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l-~~~G 83 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDT-QIEG 83 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTC-CCCS
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhc-CcCC
Confidence 589999999999999999999999999999999999999999999999997667789999999999999999764 7899
Q ss_pred cchHHHHHHHHHHHHcCCCCCCCc-EEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch---HHHHHHHHHHhCC
Q 014440 167 DSSIQNALDLVHGLLNQIPSYGHR-EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE---MFICKHLCQETGG 242 (424)
Q Consensus 167 ~tsL~~AL~~Al~~L~~~p~~~~r-eILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e---~~iLq~iA~~TGG 242 (424)
+|++++||++|+..|++.+.+..+ +|||++++..+.+++++.++++.++++||+|+|||||.+ ...|+++++..+|
T Consensus 84 ~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 84 KLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp CCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred CCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 999999999999999987665554 566667777667888899999999999999999999964 4789999999876
Q ss_pred -----EEEEe--cChhhHHHHHHh
Q 014440 243 -----TYSVA--LDESHSKELILE 259 (424)
Q Consensus 243 -----~Y~~~--~d~~~L~~lL~~ 259 (424)
.|++. ....-|.+.|..
T Consensus 164 ~~~~~s~~v~v~~g~~~lsd~l~~ 187 (268)
T 4b4t_W 164 PQEETSHLLTVTPGPRLLYENIAS 187 (268)
T ss_dssp STTTSCEEEEECCCSSCHHHHHHT
T ss_pred CCCCceeEEEeCCCCccHHHHHhc
Confidence 45543 333346666654
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.6e-22 Score=185.84 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=139.5
Q ss_pred hccccceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhh
Q 014440 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 160 (424)
Q Consensus 81 r~GiiR~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~ 160 (424)
++++ +++|+||.|+||...|+.|+||+.+++.+..|++.+ |.+++|||+| ++.+..+.|+|.+...+...|..
T Consensus 9 ~~~~--~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F-~~~~~~~~~~~~~~~~~~~~l~~ 81 (218)
T 3ibs_A 9 RKGV--EVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL----DNDKVGMIVF-AGDAFTQLPITSDYISAKMFLES 81 (218)
T ss_dssp -CCC--EEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEE-SSSEEEEEEEESCHHHHHHHHHT
T ss_pred cCCC--cEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEE-CCCceEeCCCCCCHHHHHHHHHh
Confidence 4555 999999999999999999999999999999998754 5689999999 58899999999998888777765
Q ss_pred hh---CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch--------
Q 014440 161 KL---GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE-------- 229 (424)
Q Consensus 161 ~~---~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e-------- 229 (424)
+. .+.|+|++..||..|...|...+ ...+.||+|+++..+ + +++.++++.+++.+|+|++||+|.+
T Consensus 82 l~~~~~~~g~T~l~~al~~a~~~l~~~~-~~~~~ivllTDG~~~-~-~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~ 158 (218)
T 3ibs_A 82 ISPSLISKQGTAIGEAINLATRSFTPQE-GVGRAIIVITDGENH-E-GGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVE 158 (218)
T ss_dssp CCGGGCCSCSCCHHHHHHHHHTTSCSCS-SCCEEEEEEECCTTC-C-SCHHHHHHHHHTTTEEEEEEEESCTTCEECBCT
T ss_pred cCcccCCCCCCcHHHHHHHHHHHHhhCC-CCCcEEEEEcCCCCC-C-CcHHHHHHHHHhcCCEEEEEEecCCCCCccccc
Confidence 42 35789999999999999998752 334445555555433 2 3688999999999999999999973
Q ss_pred -------------------HHHHHHHHHHhCCEEEEecC-hhhHHHHHHhc
Q 014440 230 -------------------MFICKHLCQETGGTYSVALD-ESHSKELILEH 260 (424)
Q Consensus 230 -------------------~~iLq~iA~~TGG~Y~~~~d-~~~L~~lL~~~ 260 (424)
...|++||+.|||.|+.+.+ .+.+..++..+
T Consensus 159 g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i 209 (218)
T 3ibs_A 159 GTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEI 209 (218)
T ss_dssp TSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHH
T ss_pred CCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHH
Confidence 57999999999999999887 66677766554
No 4
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=99.84 E-value=3e-22 Score=151.45 Aligned_cols=59 Identities=36% Similarity=0.955 Sum_probs=49.6
Q ss_pred CCCCcccCccccccccCCCCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCC
Q 014440 343 IAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411 (424)
Q Consensus 343 ~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~ 411 (424)
|++|+|++++ ....++.||||+++|++ +++|+|++|+++||+|||+||||+||+||||+
T Consensus 1 l~~f~Ev~~~-----~~~~~~~C~~C~~~~~~-----~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 1 LDAFQEIPLE-----EYNGERFCYGCQGELKD-----QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CCSCCEEEHH-----HHCSCCEETTTTEECTT-----SEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred CCCccccCcc-----ccCCCCcccccCcccCC-----CccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 5799998642 33345689999999963 24699999999999999999999999999995
No 5
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.80 E-value=2e-19 Score=166.40 Aligned_cols=170 Identities=15% Similarity=0.168 Sum_probs=122.0
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEee----CCCCCHHHHHHHHhhhh
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT----DLGGSPESHIKALMGKL 162 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~ls----pLT~d~~~~~~~L~~~~ 162 (424)
++|||||.|+||... ++..+++.+..|++.+...++..++|||.| ++.+..+. |++.|.+.+..+|..+.
T Consensus 17 div~vlD~SgSM~~~-----~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 90 (223)
T 1q0p_A 17 NIYLVLDGSDSIGAS-----NFTGAKKSLVNLIEKVASYGVKPRYGLVTY-ATYPKIWVKVSEADSSNADWVTKQLNEIN 90 (223)
T ss_dssp EEEEEEECSTTTCHH-----HHHHHHHHHHHHHHHHHTTTCCCEEEEEEE-SSSEEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCCCchH-----HHHHHHHHHHHHHHHHhcCCCCceEEEEEe-cCccceeeccccCCCCCHHHHHHHHHhcc
Confidence 999999999999764 589999999999998877778899999999 58889888 44556677878887653
Q ss_pred C----CCCcchHHHHHHHHHHHHcCCCC------CCCcEEEEEEcCCCCC---CccCHHHHHHH----------HHhCCc
Q 014440 163 G----CSGDSSIQNALDLVHGLLNQIPS------YGHREVLILYSALSTC---DPGDIMETIQK----------CKESKI 219 (424)
Q Consensus 163 ~----~~G~tsL~~AL~~Al~~L~~~p~------~~~reILvI~ss~~t~---dp~~i~~~i~~----------akk~~I 219 (424)
. ..|+|+++.||..|+..|..... ...+++|||++++... ||..+.+.++. +++.+|
T Consensus 91 ~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (223)
T 1q0p_A 91 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 170 (223)
T ss_dssp TTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGE
T ss_pred cccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCc
Confidence 1 46899999999999999986422 1345566665544332 44433344432 356789
Q ss_pred EEEEEEecc--hHHHHHHHHHHhCC--EEEEecChhhHHHHHHhcCC
Q 014440 220 RCSVIGLSA--EMFICKHLCQETGG--TYSVALDESHSKELILEHAP 262 (424)
Q Consensus 220 rV~vIgLg~--e~~iLq~iA~~TGG--~Y~~~~d~~~L~~lL~~~~~ 262 (424)
+|++||+|. +...|++||..||| .|+.+.|.+.|.+++.++..
T Consensus 171 ~i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~ 217 (223)
T 1q0p_A 171 DVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMID 217 (223)
T ss_dssp EEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC-------------
T ss_pred EEEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhc
Confidence 999999996 46899999999999 89999999999999887764
No 6
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.80 E-value=1.9e-19 Score=161.78 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=125.8
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhhhh--CC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~~~--~~ 164 (424)
+++|+||.|+||...++ +|+..+++. +..++. |.+++|||.| ++.+..+.|++.+...+.+.|..+. .+
T Consensus 8 dvv~vlD~SgSM~~~~~--~~~~~~~~~----~~~~~~--~~~~v~lv~f-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 78 (182)
T 1shu_X 8 DLYFVLDKSGSVANNWI--EIYNFVQQL----AERFVS--PEMRLSFIVF-SSQATIILPLTGDRGKISKGLEDLKRVSP 78 (182)
T ss_dssp EEEEEEECSGGGGGGHH--HHHHHHHHH----HHHCCC--TTEEEEEEEE-SSSEEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEECCCCcccCHH--HHHHHHHHH----HHHhcC--CCceEEEEEe-CCCceEEECCCCCHHHHHHHHHhcccCCC
Confidence 99999999999986432 344554444 444433 7899999999 5899999999998888777776543 47
Q ss_pred CCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCcc--CHHHHHHHHHhCCcEEEEEEecc-hHHHHHHHHHHhC
Q 014440 165 SGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPG--DIMETIQKCKESKIRCSVIGLSA-EMFICKHLCQETG 241 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~--~i~~~i~~akk~~IrV~vIgLg~-e~~iLq~iA~~TG 241 (424)
.|+|+++.||..|+..|...+....+++|||++++...+.. .+.++++.+++.+|+|++||+|. +...|++||..||
T Consensus 79 ~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~~~~L~~ia~~~~ 158 (182)
T 1shu_X 79 VGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKE 158 (182)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHSSSGG
T ss_pred CCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCCHHHHHHHhCCCC
Confidence 89999999999999999764322334455555443322221 23467889999999999999994 4689999999999
Q ss_pred CEEEEecChhhHHHHHHhcC
Q 014440 242 GTYSVALDESHSKELILEHA 261 (424)
Q Consensus 242 G~Y~~~~d~~~L~~lL~~~~ 261 (424)
|.|++..+.+.|.+++.++.
T Consensus 159 ~~~~~~~~~~~L~~~~~~i~ 178 (182)
T 1shu_X 159 QVFPVKGGFQALKGIINSIL 178 (182)
T ss_dssp GEEESSSTTHHHHHHHHHHH
T ss_pred ceEEccCCHHHHHHHHHHHH
Confidence 99998888888988887653
No 7
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.78 E-value=2.5e-18 Score=160.78 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=128.7
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC--CHHHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG--SPESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~--d~~~~~~~L~~~~~~ 164 (424)
+||||||.|+||.. ++.+++.+..|++.+....+..++|||.| ++.+..+.|++. +..+++++|..+...
T Consensus 24 div~vlD~SgSM~~-------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F-~~~~~~~~~l~~~~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 24 DIVIVLDGSNSIYP-------WESVIAFLNDLLKRMDIGPKQTQVGIVQY-GENVTHEFNLNKYSSTEEVLVAANKIVQR 95 (223)
T ss_dssp EEEEEEECSTTCCC-------HHHHHHHHHHHHTTSCCSTTSCCEEEEEE-SSSEEEEECTTTCCSHHHHHHHHTTCCCC
T ss_pred eEEEEEECCCChhh-------HHHHHHHHHHHHHhcccCCCCeEEEEEEe-CCCccEEEecCCCCCHHHHHHHHHhhhcc
Confidence 99999999999972 78888888888876644467899999999 589999999963 456666777654223
Q ss_pred CC-cchHHHHHHHHHHHHcCC---CCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch-----------
Q 014440 165 SG-DSSIQNALDLVHGLLNQI---PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE----------- 229 (424)
Q Consensus 165 ~G-~tsL~~AL~~Al~~L~~~---p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e----------- 229 (424)
.| +|.++.||..|.+.+... .....+++|||++++...+..++.++++.+++.||+|++||+|.+
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~ 175 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKF 175 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHH
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecCccccccccchhH
Confidence 34 499999999999985321 123345666666554444555678899999999999999999974
Q ss_pred HHHHHHHHHH-hCCEEEEecChhhHHHHHHhcC
Q 014440 230 MFICKHLCQE-TGGTYSVALDESHSKELILEHA 261 (424)
Q Consensus 230 ~~iLq~iA~~-TGG~Y~~~~d~~~L~~lL~~~~ 261 (424)
...|++||.. |||.||.+.|.++|.+++..+.
T Consensus 176 ~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~ 208 (223)
T 2b2x_A 176 VEEIKSIASEPTEKHFFNVSDELALVTIVKALG 208 (223)
T ss_dssp HHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHH
T ss_pred HHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHH
Confidence 3799999999 9999999988888877766554
No 8
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.77 E-value=4.1e-18 Score=156.54 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=126.8
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC--CHHHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG--SPESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~--d~~~~~~~L~~~~~~ 164 (424)
++|||||.|+||. .++.+++.+..|++.+....+..++|||.| ++.+..+.||+. +...++++|..+...
T Consensus 8 div~vlD~SgSm~-------~~~~~k~~~~~~~~~l~~~~~~~rvglv~f-~~~~~~~~~l~~~~~~~~~~~~i~~l~~~ 79 (200)
T 1v7p_C 8 DVVVVCDESNSIY-------PWDAVKNFLEKFVQGLDIGPTKTQVGLIQY-ANNPRVVFNLNTYKTKEEMIVATSQTSQY 79 (200)
T ss_dssp EEEEEEECCTTCC-------CHHHHHHHHHHHHHTSCBSTTSEEEEEEEE-SSSEEEEECTTTCSSHHHHHHHHHHCCCC
T ss_pred cEEEEEECCCCcc-------cHHHHHHHHHHHHHhcCCCCCceEEEEEEE-CCCceEEEeCCCcCCHHHHHHHHHhhhcc
Confidence 9999999999996 278888888888887654456799999999 589999999983 566777777754222
Q ss_pred CC-cchHHHHHHHHHHH-HcCC--CCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch-----------
Q 014440 165 SG-DSSIQNALDLVHGL-LNQI--PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE----------- 229 (424)
Q Consensus 165 ~G-~tsL~~AL~~Al~~-L~~~--p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e----------- 229 (424)
.| +|.++.||..|.+. +... .....+++|||++++...++.++.++++.+++.||+|++||+|+.
T Consensus 80 ~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~ 159 (200)
T 1v7p_C 80 GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNL 159 (200)
T ss_dssp CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHH
T ss_pred CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccccccccchhhH
Confidence 34 69999999999997 4321 112344566665544444666677889999999999999999531
Q ss_pred HHHHHHHHHHhCCEE-EEecChhhHHHHHHhc
Q 014440 230 MFICKHLCQETGGTY-SVALDESHSKELILEH 260 (424)
Q Consensus 230 ~~iLq~iA~~TGG~Y-~~~~d~~~L~~lL~~~ 260 (424)
...|++||..|||.| |.+.|.+.|.+++..+
T Consensus 160 ~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i 191 (200)
T 1v7p_C 160 IKEIKAIASIPTERYFFNVSDEAALLEKAGTL 191 (200)
T ss_dssp HHHHHHHSCSSHHHHEEEESSSGGGHHHHHHH
T ss_pred HHHHHHHhCCccHhcEEEcCCHHHHHHHHHHH
Confidence 466999999999987 5788888888887655
No 9
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.76 E-value=2.4e-17 Score=152.19 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=129.5
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCC--CCHHHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG--GSPESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT--~d~~~~~~~L~~~~~~ 164 (424)
+|+++||.|+||.. ++++.+++.+..|++.+.-..+..|+|||.| ++.+....||+ .+...+.++|.++...
T Consensus 15 divfvlD~SgSm~~-----~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~f-s~~~~~~~~l~~~~~~~~~~~~i~~l~~~ 88 (202)
T 1ijb_A 15 DLVFLLDGSSRLSE-----AEFEVLKAFVVDMMERLRVSQKWVRVAVVEY-HDGSHAYIGLKDRKRPSELRRIASQVKYA 88 (202)
T ss_dssp EEEEEEECBTTSCH-----HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEE-SSSEEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCCCCH-----HHHHHHHHHHHHHHHhcccCCCceEEEEEEE-CCCceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 99999999999964 5788999999999987643334679999999 58899999998 6777777777664323
Q ss_pred CC-cchHHHHHHHHHHHH-cCCCCCCCcEEEEEEcCCCCCC--ccCHHHHHHHHHhCCcEEEEEEecc--hHHHHHHHHH
Q 014440 165 SG-DSSIQNALDLVHGLL-NQIPSYGHREVLILYSALSTCD--PGDIMETIQKCKESKIRCSVIGLSA--EMFICKHLCQ 238 (424)
Q Consensus 165 ~G-~tsL~~AL~~Al~~L-~~~p~~~~reILvI~ss~~t~d--p~~i~~~i~~akk~~IrV~vIgLg~--e~~iLq~iA~ 238 (424)
.| +|.++.||..|+..+ ........+++|||++++...+ +.++.+.++.+++.||+|++||+|. +...|++||.
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA~ 168 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEK 168 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHhC
Confidence 34 499999999998665 3221123445666655443322 3467888999999999999999996 5689999999
Q ss_pred H-hCCEEEEecChhhHHHHHHhcC
Q 014440 239 E-TGGTYSVALDESHSKELILEHA 261 (424)
Q Consensus 239 ~-TGG~Y~~~~d~~~L~~lL~~~~ 261 (424)
. ++|.+|.+.+.+.|.+++.++.
T Consensus 169 ~~~~~~~~~~~~~~~L~~~~~~i~ 192 (202)
T 1ijb_A 169 QAPENKAFVLSSVDELEQQRDEIV 192 (202)
T ss_dssp HCTTCCCEEESSGGGHHHHHHHHH
T ss_pred CCCcccEEEeCCHHHHHHHHHHHH
Confidence 6 5788888889999988877653
No 10
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.75 E-value=8.5e-19 Score=159.80 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=123.6
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCH--HHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP--ESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~--~~~~~~L~~~~~~ 164 (424)
+++|+||.|+||... .+..+++.++.|++.+. ++..++|||.| ++.+....|++... ..+.+.|..+..+
T Consensus 11 div~vlD~SgSM~~~-----~~~~~~~~~~~~~~~l~--~~~~~v~lv~f-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 82 (198)
T 1n3y_A 11 DIVFLIDGSGSISSR-----NFATMMNFVRAVISQFQ--RPSTQFSLMQF-SNKFQTHFTFEEFRRSSNPLSLLASVHQL 82 (198)
T ss_dssp EEEEEEECCTTSCHH-----HHHHHHHHHHHHHTTSC--TTTEEEEEEEE-SSSEEEEECHHHHHHCSSGGGGGTTCCCC
T ss_pred eEEEEEECCCCCCHH-----HHHHHHHHHHHHHHhcC--CCCcEEEEEEe-CCCccEEEecCccCCHHHHHHHHhcCcCC
Confidence 999999999999864 35567777888887764 67899999999 58899999985311 1233334333236
Q ss_pred CCcchHHHHHHHHHHHH-cCC--CCCCCcEEEEEE-cCCCCCCccCHHHHHHHHHhCCcEEEEEEecchH------HHHH
Q 014440 165 SGDSSIQNALDLVHGLL-NQI--PSYGHREVLILY-SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM------FICK 234 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L-~~~--p~~~~reILvI~-ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e~------~iLq 234 (424)
.|+|+++.||..|+..+ ... .....+++|||+ ++..+.++.+..++++.+++.||+|++||+|.+. ..|+
T Consensus 83 ~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~ 162 (198)
T 1n3y_A 83 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 162 (198)
T ss_dssp CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHH
Confidence 78999999999999655 321 012334555555 4544446667788999999999999999999864 8999
Q ss_pred HHHHHhCCEE-EEecChhhHHHHHHhc
Q 014440 235 HLCQETGGTY-SVALDESHSKELILEH 260 (424)
Q Consensus 235 ~iA~~TGG~Y-~~~~d~~~L~~lL~~~ 260 (424)
+||..|||.| +.+.+.++|..++..+
T Consensus 163 ~iA~~~~g~~~~~~~~~~~l~~~~~~i 189 (198)
T 1n3y_A 163 DIASKPSQEHIFKVEDFDALKDIQNQL 189 (198)
T ss_dssp HHSCSSSGGGEEEESSGGGGGGGHHHH
T ss_pred HHHcCCCcccEEEeCCHHHHHHHHHHH
Confidence 9999999998 7788888877766554
No 11
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.75 E-value=1.3e-17 Score=154.70 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=124.5
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC--CHHHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG--SPESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~--d~~~~~~~L~~~~~~ 164 (424)
++||+||.|+||. .++.+++.+..|++.+-...+..++|||.| ++.+..+.|++. +...++.+|..+...
T Consensus 9 div~vlD~SgSm~-------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F-~~~~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 9 DIVIVLDGSNSIY-------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQY-GENVTHEFNLNKYSSTEEVLVAAKKIVQR 80 (213)
T ss_dssp EEEEEEECCTTCC-------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEE-SSSEEEEECTTTCSSHHHHHHHHHTCCCC
T ss_pred cEEEEEECCCChh-------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEe-CCCccEEEeccccCCHHHHHHHHHhccCC
Confidence 9999999999997 267788888888866543467899999999 589999999963 456666777654223
Q ss_pred CC-cchHHHHHHHHHHHHcC-C--CCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch-----------
Q 014440 165 SG-DSSIQNALDLVHGLLNQ-I--PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE----------- 229 (424)
Q Consensus 165 ~G-~tsL~~AL~~Al~~L~~-~--p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e----------- 229 (424)
.| +|.++.||..|.+.+.. . .....+++|||++++...+..++.++++.+++.||+|++||+|.+
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~ 160 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKF 160 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHH
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccchhh
Confidence 44 48999999999997532 1 112345566665544443444567889999999999999999975
Q ss_pred HHHHHHHHHH-hCCEEEEecChhhHHHHHHh
Q 014440 230 MFICKHLCQE-TGGTYSVALDESHSKELILE 259 (424)
Q Consensus 230 ~~iLq~iA~~-TGG~Y~~~~d~~~L~~lL~~ 259 (424)
...|++||.. |||.||.+.+.+.|.+++..
T Consensus 161 ~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~ 191 (213)
T 1pt6_A 161 VEEIKSIASEPTEKHFFNVSDELALVTIVKT 191 (213)
T ss_dssp HHHHHHHSCSSHHHHEEEESSGGGGGGGHHH
T ss_pred HHHHHHHhCCCchhcEEEeCCHHHHHHHHHH
Confidence 3689999999 89999999888877766655
No 12
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.74 E-value=2.2e-17 Score=171.04 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=136.0
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEee----CCCCCHHHHHHHHhhhh
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT----DLGGSPESHIKALMGKL 162 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~ls----pLT~d~~~~~~~L~~~~ 162 (424)
+||||||.|+||.. +|++.+++.+..|++.+...++..++|||+| ++.++.+. |++.|.+.+.++|..+.
T Consensus 3 div~vlD~SgSM~~-----~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 76 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA-----SNFTGAKKVLVNLIEKVASYGVKPRYGLVTY-ATYPKIWVKVSEADSSNADWVTKQLNEIN 76 (497)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEE-SSSEEEEECTTSGGGGCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCcch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEe-cCCceEeeccccccccCHHHHHHHHHhCc
Confidence 79999999999976 7999999999999999877777899999999 58899998 66677888888887653
Q ss_pred C----CCCcchHHHHHHHHHHHHcCCCC------CCCcEEEEEEcCCCCCCccCHHHHHHHHHhC-------------Cc
Q 014440 163 G----CSGDSSIQNALDLVHGLLNQIPS------YGHREVLILYSALSTCDPGDIMETIQKCKES-------------KI 219 (424)
Q Consensus 163 ~----~~G~tsL~~AL~~Al~~L~~~p~------~~~reILvI~ss~~t~dp~~i~~~i~~akk~-------------~I 219 (424)
. ..|+|+++.||..|.+.|..... ...+++|||++++...+..+...+++.+++. +|
T Consensus 77 ~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 156 (497)
T 1rrk_A 77 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 156 (497)
T ss_dssp GGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGE
T ss_pred CccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCe
Confidence 1 56799999999999999964321 2244566655544333333556666666665 99
Q ss_pred EEEEEEecc--hHHHHHHHHHHhCC--EEEEecChhhHHHHHHhcCC
Q 014440 220 RCSVIGLSA--EMFICKHLCQETGG--TYSVALDESHSKELILEHAP 262 (424)
Q Consensus 220 rV~vIgLg~--e~~iLq~iA~~TGG--~Y~~~~d~~~L~~lL~~~~~ 262 (424)
+|++||+|. +...|++||..+|| .|+.+.|.+.|.+++.+.+.
T Consensus 157 ~v~~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~ 203 (497)
T 1rrk_A 157 DVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMID 203 (497)
T ss_dssp EEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSC
T ss_pred eEEEecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhccc
Confidence 999999996 46899999999999 99999999999999986553
No 13
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.74 E-value=7.7e-17 Score=168.07 Aligned_cols=165 Identities=15% Similarity=0.198 Sum_probs=127.5
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCC--------CCHHHHHHHH
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG--------GSPESHIKAL 158 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT--------~d~~~~~~~L 158 (424)
+++||||.|+||. ..++||+.+++++..|++.+ .|.+++|||+| ++.+..+.|++ .+.+.+...|
T Consensus 79 dvv~VLD~SGSM~---~~~~rl~~ak~a~~~ll~~L---~~~drv~lV~F-s~~a~~~~p~t~~l~~~~~~~~~~l~~~I 151 (464)
T 4fx5_A 79 VEVIIIDCSGSMD---YPRTKMMAAKEATKVAIDTL---TDGAFFAVVAG-TEGARVVYPTGGQLLRADYQSRAAAKEAV 151 (464)
T ss_dssp EEEEEEECCGGGG---TTTHHHHHHHHHHHHHHHHS---CTTCEEEEEEE-SSSEEEEESSSSSCEECSHHHHHHHHHHH
T ss_pred eEEEEEEcCcccC---CCCchHHHHHHHHHHHHHhC---CCCCEEEEEEE-cCceEEEecCCcccccCCHHHHHHHHHHH
Confidence 9999999999997 34799999999999999875 46789999999 69999999986 2344555556
Q ss_pred hhhhCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCC-CccCHHHHHHHHHhCCcEEEEEEecch--HHHHHH
Q 014440 159 MGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTC-DPGDIMETIQKCKESKIRCSVIGLSAE--MFICKH 235 (424)
Q Consensus 159 ~~~~~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~-dp~~i~~~i~~akk~~IrV~vIgLg~e--~~iLq~ 235 (424)
.. +.+.|+|++..||..|++.|...+ ...+.||+|+++..+. ++..+.+++ .+.+.+|+|++||+|.+ ...|++
T Consensus 152 ~~-L~~~GgT~l~~aL~~A~~~l~~~~-~~~~~IILLTDG~~~~~~~~~l~~~~-~a~~~~i~i~tiGiG~~~d~~~L~~ 228 (464)
T 4fx5_A 152 GR-LHANGGTAMGRWLAQAGRIFDTAP-SAIKHAILLTDGKDESETPADLARAI-QSSIGNFTADCRGIGEDWEPKELRK 228 (464)
T ss_dssp HT-CCCCSCCCHHHHHHHHHHHHTTCT-TSEEEEEEEESSCCTTSCHHHHHHHH-HHHTTTCEEEEEEESSSSCHHHHHH
T ss_pred Hc-CCCCCCCcHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCCCCCChHHHHHHH-HHhcCCCeEEEEEeCCccCHHHHHH
Confidence 54 368899999999999999998753 2234455555554432 222233333 34578999999999964 689999
Q ss_pred HHHHhCCEEEEecChhhHHHHHHhcC
Q 014440 236 LCQETGGTYSVALDESHSKELILEHA 261 (424)
Q Consensus 236 iA~~TGG~Y~~~~d~~~L~~lL~~~~ 261 (424)
||+.|||.|+.+.+.+.|.+.+..++
T Consensus 229 IA~~tgG~~~~v~d~~~L~~~f~~i~ 254 (464)
T 4fx5_A 229 IADALLGTVGIIRDPATLAEDFREMT 254 (464)
T ss_dssp HHHHTTCCEEEESSGGGHHHHHHHHH
T ss_pred HHHhCCCEEEEcCCHHHHHHHHHHHH
Confidence 99999999999999988877766554
No 14
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.73 E-value=6.6e-17 Score=147.00 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=128.4
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCC--CCCHHHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL--GGSPESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspL--T~d~~~~~~~L~~~~~~ 164 (424)
+++|+||.|+||.. +|++.+++.+..|++.+-......++|||.| ++.+..+.|+ +.+.+.+.++|..+...
T Consensus 7 div~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f-~~~~~~~~~l~~~~~~~~~~~~i~~l~~~ 80 (189)
T 1atz_A 7 DVILLLDGSSSFPA-----SYFDEMKSFAKAFISKANIGPRLTQVSVLQY-GSITTIDVPWNVVPEKAHLLSLVDVMQRE 80 (189)
T ss_dssp EEEEEEECSSSSCH-----HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEE-SSSEEEEECTTCCCCHHHHHHHHHTCCCC
T ss_pred eEEEEEeCCCCCCh-----hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEE-CCcceEEEecCCCCCHHHHHHHHHhCcCC
Confidence 99999999999964 6999999999999987643334579999999 5899999999 77888888888765334
Q ss_pred CCcchHHHHHHHHHHHHcCCC---CCCCcE-EEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecc--hHHHHHHHHH
Q 014440 165 SGDSSIQNALDLVHGLLNQIP---SYGHRE-VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA--EMFICKHLCQ 238 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L~~~p---~~~~re-ILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~--e~~iLq~iA~ 238 (424)
.|+|.++.||..|++.|.... ....++ ||||+++..+ .++.++++.+++.||+|++||+|. +...|++||.
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~---~~~~~~~~~~~~~gi~v~~igvG~~~~~~~L~~iA~ 157 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSV---DSVDAAADAARSNRVTVFPIGIGDRYDAAQLRILAG 157 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCS---SCCHHHHHHHHHTTEEEEEEEESSSSCHHHHHHHTG
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCC---chHHHHHHHHHHCCCEEEEEEcCCcCCHHHHHHHHC
Confidence 688999999999999987531 122345 5556665443 245788999999999999999996 4689999999
Q ss_pred HhCCEE-EEecChhhHHHHH
Q 014440 239 ETGGTY-SVALDESHSKELI 257 (424)
Q Consensus 239 ~TGG~Y-~~~~d~~~L~~lL 257 (424)
.++|.| +.+.+.++|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~l~ 177 (189)
T 1atz_A 158 PAGDSNVVKLQRIEDLPTMV 177 (189)
T ss_dssp GGGGGGCEEESSTTHHHHHH
T ss_pred CCcccCEEEecChhhHHHHH
Confidence 998765 4567777777774
No 15
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.73 E-value=4.5e-18 Score=155.17 Aligned_cols=166 Identities=10% Similarity=0.021 Sum_probs=126.5
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCC--HHHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS--PESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d--~~~~~~~L~~~~~~ 164 (424)
+|+|+||.|+||.. ++++.+++.+..|++.+. .+..++|||.| ++.+..+.|++.. .+.+..+|..+..+
T Consensus 7 div~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f-~~~~~~~~~l~~~~~~~~~~~~i~~l~~~ 78 (194)
T 1mf7_A 7 DIAFLIDGSGSIIP-----HDFRRMKEFVSTVMEQLK--KSKTLFSLMQY-SEEFRIHFTFKEFQNNPNPRSLVKPITQL 78 (194)
T ss_dssp EEEEEEECCTTSCH-----HHHHHHHHHHHHHHHHHC--CTTEEEEEEEE-SSSEEEEECHHHHHHSCCHHHHHTTCCCC
T ss_pred eEEEEEeCCCCCCH-----HHHHHHHHHHHHHHHhcC--CCCeEEEEEEe-cCCceEEEecCCcCCHHHHHHHHHhCcCC
Confidence 99999999999964 478899999999998775 45689999999 5889999998752 23455556554235
Q ss_pred CCcchHHHHHHHHHHHHcCC-C--CCCCcEEEEEEc-CCCCCCccCHHHHHHHHHhCCcEEEEEEecch------HHHHH
Q 014440 165 SGDSSIQNALDLVHGLLNQI-P--SYGHREVLILYS-ALSTCDPGDIMETIQKCKESKIRCSVIGLSAE------MFICK 234 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L~~~-p--~~~~reILvI~s-s~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e------~~iLq 234 (424)
.|+|.++.||..|.+.+... . ....+++|||++ +..+.|+..+.++++.+++.||+|++||+|.+ ...|+
T Consensus 79 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~ 158 (194)
T 1mf7_A 79 LGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELN 158 (194)
T ss_dssp CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHH
Confidence 78999999999999866421 1 122345555554 43333666667888999999999999999976 48999
Q ss_pred HHHHHh-CCEEEEecChhhHHHHHHhc
Q 014440 235 HLCQET-GGTYSVALDESHSKELILEH 260 (424)
Q Consensus 235 ~iA~~T-GG~Y~~~~d~~~L~~lL~~~ 260 (424)
+||..+ +|.||.+.|.+.|.+++..+
T Consensus 159 ~iA~~~~~~~~~~~~~~~~l~~~~~~i 185 (194)
T 1mf7_A 159 TIASKPPRDHVFQVNNFEALKTIQNQL 185 (194)
T ss_dssp HHSCSSHHHHEEEESSGGGGGGGHHHH
T ss_pred HHhCCCCcccEEEeCCHHHHHHHHHHH
Confidence 999986 58888888888877776554
No 16
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.73 E-value=2.4e-17 Score=159.82 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=133.8
Q ss_pred ccccceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCC----HHHHHHH
Q 014440 82 KGLIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS----PESHIKA 157 (424)
Q Consensus 82 ~GiiR~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d----~~~~~~~ 157 (424)
..+ +||||||.|+||... ++++.+++.+..|++.+.......++|||.|. +.+..+.||+.. .+.+..+
T Consensus 20 ~~~--div~vlD~SgSM~~~----~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~~~~~~l~~~ 92 (281)
T 4hqf_A 20 DEV--DLYLLMDGSGSIRRH----NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFS-NNAREIIRLHSDASKNKEKALII 92 (281)
T ss_dssp SCE--EEEEEEECCCCSSTH----HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEE-TTEEEEEEECSSCSSCHHHHHHH
T ss_pred Cce--eEEEEEeCCCCcCHH----HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcC-CCceEEEEccccCccCHHHHHHH
Confidence 455 999999999999753 34588888899888877655557899999995 889999888864 6667666
Q ss_pred Hhhhh---CCCCcchHHHHHHHHHHHHcCCCC-CCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecc--hHH
Q 014440 158 LMGKL---GCSGDSSIQNALDLVHGLLNQIPS-YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA--EMF 231 (424)
Q Consensus 158 L~~~~---~~~G~tsL~~AL~~Al~~L~~~p~-~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~--e~~ 231 (424)
|..+. .+.|+|.++.||..|+..|..... ...+++|||++++...|+.++.++++.+++.||+|++||+|. +..
T Consensus 93 i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~~~~~ 172 (281)
T 4hqf_A 93 IKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVA 172 (281)
T ss_dssp HHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSSCCHH
T ss_pred HHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCccCHH
Confidence 66543 467899999999999998876421 224566666655555466678889999999999999999997 468
Q ss_pred HHHHHHHH--hCC--EEEEecChhhHHHHHHhc
Q 014440 232 ICKHLCQE--TGG--TYSVALDESHSKELILEH 260 (424)
Q Consensus 232 iLq~iA~~--TGG--~Y~~~~d~~~L~~lL~~~ 260 (424)
.|++||.. ||| .|+.+.+.+.|..++..+
T Consensus 173 ~L~~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l 205 (281)
T 4hqf_A 173 FNRFLVGCHPSDGKCNLYADSAWENVKNVIGPF 205 (281)
T ss_dssp HHHHHTTSCSSSSCCTTEEEECGGGHHHHHHHH
T ss_pred HHHhhhCCCCCCCCCceEEecchhhhhcccCCc
Confidence 89999987 566 788888888888776544
No 17
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.73 E-value=5.8e-17 Score=156.39 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=136.8
Q ss_pred hccccceEEEEEeCCHhhhcCCCCCChH-HHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCC----HHHHH
Q 014440 81 QKGLIRYLYIVIDLSRAAAEMDFRPSRM-VVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS----PESHI 155 (424)
Q Consensus 81 r~GiiR~lvlvLD~S~SM~~~D~~P~RL-~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d----~~~~~ 155 (424)
++.+ +|||+||.|+||... .+ ..++..+..|++.+...++..++|||.| ++.+..+.||+.. .+.++
T Consensus 16 ~~~~--DivfvlD~SgSM~~~-----~~~~~~k~~~~~lv~~l~~~~~~~rvglv~F-s~~~~~~~~l~~~~~~~~~~~~ 87 (266)
T 4hqo_A 16 NEQV--DLYLLVDGSGSIGYP-----NWITKVIPMLNGLINSLSLSRDTINLYMNLF-GSYTTELIRLGSGQSIDKRQAL 87 (266)
T ss_dssp CCCE--EEEEEEECSTTTCHH-----HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEE-SSSEEEEECTTSHHHHCHHHHH
T ss_pred CCce--eEEEEEECCCCcChh-----HHHHHHHHHHHHHHHHcccCCCCcEEEEEEe-cCCcceEEecCCCCccCHHHHH
Confidence 3445 999999999999754 45 4788888999988765567899999999 5889999999864 45666
Q ss_pred HHHhhhh---CCCCcchHHHHHHHHHHHHcCC-CCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecc--h
Q 014440 156 KALMGKL---GCSGDSSIQNALDLVHGLLNQI-PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA--E 229 (424)
Q Consensus 156 ~~L~~~~---~~~G~tsL~~AL~~Al~~L~~~-p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~--e 229 (424)
.+|..+. .+.|+|.++.||..|...|... .....+++|||++++...|+.++.++++.+++.||+|++||+|. +
T Consensus 88 ~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~~ 167 (266)
T 4hqo_A 88 SKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGIN 167 (266)
T ss_dssp HHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSSCC
T ss_pred HHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcccC
Confidence 7776653 5789999999999999999764 11234456666655554466678899999999999999999997 4
Q ss_pred HHHHHHHHHHh--CC--EEEEecChhhHHHHHHhcCC
Q 014440 230 MFICKHLCQET--GG--TYSVALDESHSKELILEHAP 262 (424)
Q Consensus 230 ~~iLq~iA~~T--GG--~Y~~~~d~~~L~~lL~~~~~ 262 (424)
..+|++||..+ +| .|+.+.|.+.|.+++..+..
T Consensus 168 ~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~ 204 (266)
T 4hqo_A 168 HQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIA 204 (266)
T ss_dssp HHHHHHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHC
T ss_pred HHHHHHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Confidence 68899999875 33 78888899999988877663
No 18
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.72 E-value=2.7e-17 Score=147.95 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=123.8
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhhhh--CC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~~~--~~ 164 (424)
+++++||.|+||... +...++.++.++..++ +|..++|||.| ++.+..+.|++.+.+.+...|..+. .+
T Consensus 9 div~vlD~SgSM~~~------~~~~~~~~~~~~~~~~--~~~~~v~lv~f-~~~~~~~~~l~~~~~~~~~~i~~l~~~~~ 79 (185)
T 3n2n_F 9 DLYFILDKSGSVLHH------WNEIYYFVEQLAHKFI--SPQLRMSFIVF-STRGTTLMKLTEDREQIRQGLEELQKVLP 79 (185)
T ss_dssp EEEEEEECSGGGGGG------HHHHHHHHHHHHHHCC--CTTEEEEEEEE-SSSEEEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred eEEEEEeCCCChhhh------HHHHHHHHHHHHHHhC--CCCcEEEEEEE-ecCceEEeccCCCHHHHHHHHHHHhhhcC
Confidence 999999999999752 4556666777777763 47899999999 5899999999999888888887654 46
Q ss_pred CCcchHHHHHHHHHHHHcC--CCCCCCcEEEEEEcCCCCCCcc--CHHHHHHHHHhCCcEEEEEEecc-hHHHHHHHHHH
Q 014440 165 SGDSSIQNALDLVHGLLNQ--IPSYGHREVLILYSALSTCDPG--DIMETIQKCKESKIRCSVIGLSA-EMFICKHLCQE 239 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L~~--~p~~~~reILvI~ss~~t~dp~--~i~~~i~~akk~~IrV~vIgLg~-e~~iLq~iA~~ 239 (424)
.|+|.++.||..|.+.|.. .+....+++|||++++...+.. ++.+.++.+++.||+|++||+|. +...|++||..
T Consensus 80 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~L~~iA~~ 159 (185)
T 3n2n_F 80 GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADS 159 (185)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSSCCHHHHTTTSSS
T ss_pred CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEeccCCHHHHHHHhCC
Confidence 8999999999999998842 2222234555555544332221 23578999999999999999994 46899999976
Q ss_pred hCCEEEEecC-hhhHHHHHHhcC
Q 014440 240 TGGTYSVALD-ESHSKELILEHA 261 (424)
Q Consensus 240 TGG~Y~~~~d-~~~L~~lL~~~~ 261 (424)
. |.+|.+.| .+.|..++.++.
T Consensus 160 ~-~~~~~~~~~~~~L~~~~~~i~ 181 (185)
T 3n2n_F 160 K-DHVFPVNDGFQALQGIIHSIL 181 (185)
T ss_dssp G-GGEEEHHHHHHHHHHHHHHHH
T ss_pred C-CCeEEeccHHHHHHHHHHHHH
Confidence 5 45555555 778888876653
No 19
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.70 E-value=1.1e-16 Score=170.41 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=126.8
Q ss_pred eEEEEEeCCHhhhcCCC-CCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCce--------------EEeeCCCCCH
Q 014440 87 YLYIVIDLSRAAAEMDF-RPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA--------------NCLTDLGGSP 151 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~-~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A--------------~~lspLT~d~ 151 (424)
.+||+||+|+||.+.|. .|+||+++++++..|+......+|.++||||+|+ +.+ .++.||+...
T Consensus 9 ~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~-~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 9 AVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG-TDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-CSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred EEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEc-cCCCCCccccccCCCceEEeecCCCCC
Confidence 68999999999999998 7999999999999999987778999999999995 554 2444554333
Q ss_pred HHHHHHHhhhhCCC-CcchHHHHHHHHHHHHcCC--CC-CCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEE-EEEe
Q 014440 152 ESHIKALMGKLGCS-GDSSIQNALDLVHGLLNQI--PS-YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCS-VIGL 226 (424)
Q Consensus 152 ~~~~~~L~~~~~~~-G~tsL~~AL~~Al~~L~~~--p~-~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~-vIgL 226 (424)
...+..|...+.+. ++|+|++||.+|..+|++. .. ..+|+||+|+++.++.+..++.++++.+++.||+|+ |||+
T Consensus 88 ~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~ 167 (565)
T 1jey_B 88 FDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPF 167 (565)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecc
Confidence 45566776633443 6899999999999999864 22 234667777765555555678899999999999999 9988
Q ss_pred cch----------------------------------HHHHHHHHHHhCC-----EEEEec
Q 014440 227 SAE----------------------------------MFICKHLCQETGG-----TYSVAL 248 (424)
Q Consensus 227 g~e----------------------------------~~iLq~iA~~TGG-----~Y~~~~ 248 (424)
|.+ ..+|++||+.||| .|+.+.
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~ 228 (565)
T 1jey_B 168 SLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFS 228 (565)
T ss_dssp CCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHH
T ss_pred CCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHH
Confidence 753 2359999999999 898864
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.68 E-value=3e-19 Score=162.13 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=126.6
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhhhhCCC
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCS 165 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~~~~~~ 165 (424)
++++|+||.|+||. ++|++.+++.+..|++.+ .++.+++|||+|.+..+.++.|+|.+...+...|..+ .+.
T Consensus 6 ~~vv~vlD~SgSM~-----~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l-~~~ 77 (189)
T 2x31_A 6 RVLIFAVDASGSAA-----VARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGL-PGG 77 (189)
T ss_dssp CEEEEEEECCTTSC-----C--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHC-CCC
T ss_pred eEEEEEEECCCCCC-----chHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcC-CCC
Confidence 39999999999995 579999999999999765 3677999999996447889999999988887777654 678
Q ss_pred CcchHHHHHHHHHHHHcCCCCCCCcEEEEEEc-CCCCCCc----------cCHHHHHHHHHhCCcEEEEEEecch-HHHH
Q 014440 166 GDSSIQNALDLVHGLLNQIPSYGHREVLILYS-ALSTCDP----------GDIMETIQKCKESKIRCSVIGLSAE-MFIC 233 (424)
Q Consensus 166 G~tsL~~AL~~Al~~L~~~p~~~~reILvI~s-s~~t~dp----------~~i~~~i~~akk~~IrV~vIgLg~e-~~iL 233 (424)
|+|++..||..|+..|........+++|||++ +..+... .++.+.++.+++.||+|++||+|.. ...|
T Consensus 78 g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~~~~L 157 (189)
T 2x31_A 78 GGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRPNPAL 157 (189)
T ss_dssp BCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSSCSSS
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCCCHHHH
Confidence 99999999999999998753333445555554 4333211 1222446677889999999999975 6789
Q ss_pred HHHHHHhCCEEEEecCh--hhHHHHHHhcC
Q 014440 234 KHLCQETGGTYSVALDE--SHSKELILEHA 261 (424)
Q Consensus 234 q~iA~~TGG~Y~~~~d~--~~L~~lL~~~~ 261 (424)
++||..|||.|+.+.+. +.|.+++...+
T Consensus 158 ~~iA~~~~G~~~~~~~~~~~~~~~~~~~~~ 187 (189)
T 2x31_A 158 VDLARTMDAHYIALPRATAHKMADVLGAAL 187 (189)
T ss_dssp CSTTTEEEESSTTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCeEEECCCcchHHHHHHHHHhh
Confidence 99999999999976432 34666665443
No 21
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.67 E-value=3.3e-16 Score=163.10 Aligned_cols=169 Identities=14% Similarity=0.166 Sum_probs=133.7
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC----CHHHHHHHHhhhh
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG----SPESHIKALMGKL 162 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~----d~~~~~~~L~~~~ 162 (424)
+||||||.|+||... +++.+++.+..|++.+...++..++|||+| ++.+..+.|++. |.+.+..+|..+.
T Consensus 11 divfvlD~SgSM~~~-----~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f-~~~~~~~~~l~~~~~~~~~~~~~~l~~l~ 84 (509)
T 2odp_A 11 NLYLLLDASQSVSEN-----DFLIFKESASLMVDRIFSFEINVSVAIITF-ASEPKVLMSVLNDNSRDMTEVISSLENAN 84 (509)
T ss_dssp EEEEEEECSTTSCHH-----HHHHHHHHHHHHHHHHHTTCCCEEEEEEEE-SSSEEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred eEEEEEeCCCccchh-----hHHHHHHHHHHHHHHhhccCCCceEEEEEc-cCCCceeEeccCCCCCCHHHHHHHHHhcc
Confidence 999999999999764 678999999999998866678899999999 599999999986 7788888887652
Q ss_pred C---C-CCcchHHHHHHHHHHHHcCCC---C------CCCcEEEEEEcCCCCCCccCHHHHHHHHH---------hCCcE
Q 014440 163 G---C-SGDSSIQNALDLVHGLLNQIP---S------YGHREVLILYSALSTCDPGDIMETIQKCK---------ESKIR 220 (424)
Q Consensus 163 ~---~-~G~tsL~~AL~~Al~~L~~~p---~------~~~reILvI~ss~~t~dp~~i~~~i~~ak---------k~~Ir 220 (424)
. + .|+|.++.||..|++.|.... . ...+++|||++++...+..+..++++.++ +.+|+
T Consensus 85 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 164 (509)
T 2odp_A 85 YKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLD 164 (509)
T ss_dssp GGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEE
T ss_pred cccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceE
Confidence 1 1 489999999999999995421 0 01335666655443333344455666665 88999
Q ss_pred EEEEEecc---hHHHHHHHHHHhCCE--EEEecChhhHHHHHHhcC
Q 014440 221 CSVIGLSA---EMFICKHLCQETGGT--YSVALDESHSKELILEHA 261 (424)
Q Consensus 221 V~vIgLg~---e~~iLq~iA~~TGG~--Y~~~~d~~~L~~lL~~~~ 261 (424)
|++||+|. +...|++||..++|. |+.+.|.+.|.+++..+.
T Consensus 165 i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~ 210 (509)
T 2odp_A 165 IYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHML 210 (509)
T ss_dssp EEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHE
T ss_pred EEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhh
Confidence 99999996 478999999999998 888999999999998774
No 22
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.66 E-value=3.5e-16 Score=169.71 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=130.2
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC----CHHHHHHHHhhhh
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG----SPESHIKALMGKL 162 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~----d~~~~~~~L~~~~ 162 (424)
+||||||.|+||... .++.+++.+..|++.+.......|+|||+| ++.+..+.|++. +.+.++++|.++.
T Consensus 245 div~vlD~SgSM~~~-----~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f-~~~~~~~~~l~~~~~~~~~~~~~~i~~l~ 318 (741)
T 3hrz_D 245 NIYLVLDGSGSIGAS-----DFTGAKKCLVNLIEKVASYGVKPRYGLVTY-ATYPKIWVKVSEADSSNADWVTKQLNEIN 318 (741)
T ss_dssp EEEEEEECSTTTCHH-----HHHHHHHHHHHHHHHHHHTTCCCEEEEEEE-SSSEEEEECTTSGGGGCHHHHHHHHTTCC
T ss_pred eEEEEeccCCccccc-----chHHHHHHHHHHHHhhhccCCCceEEEEEe-ccCCceeEeecccCCcCHHHHHHHHHhcc
Confidence 999999999999764 588999999999999876666689999999 599999999997 7778888887653
Q ss_pred C----CCCcchHHHHHHHHHHHHcCCCC------CCCcEEEEEEcCCCCCCccCHHHHHH-------------HHHhCCc
Q 014440 163 G----CSGDSSIQNALDLVHGLLNQIPS------YGHREVLILYSALSTCDPGDIMETIQ-------------KCKESKI 219 (424)
Q Consensus 163 ~----~~G~tsL~~AL~~Al~~L~~~p~------~~~reILvI~ss~~t~dp~~i~~~i~-------------~akk~~I 219 (424)
. ..|+|.++.||..|++.|..... ...+++|||++++.....++...+++ .+++.+|
T Consensus 319 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi 398 (741)
T 3hrz_D 319 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 398 (741)
T ss_dssp GGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGE
T ss_pred cccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCe
Confidence 1 68899999999999999943211 11234555554433322223333333 5567899
Q ss_pred EEEEEEecc--hHHHHHHHHHHhCCE--EEEecChhhHHHHHHhcC
Q 014440 220 RCSVIGLSA--EMFICKHLCQETGGT--YSVALDESHSKELILEHA 261 (424)
Q Consensus 220 rV~vIgLg~--e~~iLq~iA~~TGG~--Y~~~~d~~~L~~lL~~~~ 261 (424)
+|++||+|. +...|++||..++|. ||.+.|.+.|.+++..++
T Consensus 399 ~i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~ 444 (741)
T 3hrz_D 399 DVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMI 444 (741)
T ss_dssp EEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhh
Confidence 999999994 578999999999996 888889998888877643
No 23
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.64 E-value=2.3e-15 Score=136.06 Aligned_cols=143 Identities=11% Similarity=0.036 Sum_probs=105.6
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC----CHHHHHHHHhhhh
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG----SPESHIKALMGKL 162 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~----d~~~~~~~L~~~~ 162 (424)
+|||+||.|+||.. +++..+++.+..|++.+-...+..++|||.| ++.+....|++. +.+.+.+.|..+.
T Consensus 19 divfvlD~SgSm~~-----~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F-~~~~~~~~~l~~~~~~~~~~~~~~i~~l~ 92 (178)
T 2xgg_A 19 DICFLIDSSGSIGI-----QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTY-STDVHLQWDLQSPNAVDKQLAAHAVLDMP 92 (178)
T ss_dssp EEEEEEECCTTTCH-----HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEE-SSSEEEEECTTSGGGSCHHHHHHHHHHCC
T ss_pred eEEEEEECCCCCCH-----HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEe-CCceEEEEeCCCCCccCHHHHHHHHHhCC
Confidence 99999999999954 5789999999999987643345589999999 588999999987 6677877887653
Q ss_pred CCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecchH--HHHHH
Q 014440 163 GCSGDSSIQNALDLVHGLLNQI---PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM--FICKH 235 (424)
Q Consensus 163 ~~~G~tsL~~AL~~Al~~L~~~---p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e~--~iLq~ 235 (424)
.+.|+|.++.||+.|.+.|... .....+++|||++++...+..++.++++.+++.||+|++||+|.+. ..|+.
T Consensus 93 ~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 93 YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC----------
T ss_pred CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCCcCCHHHHhc
Confidence 4678999999999999987432 1123445666655444434444678899999999999999999753 44443
No 24
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.57 E-value=2.7e-14 Score=131.36 Aligned_cols=162 Identities=9% Similarity=0.004 Sum_probs=120.1
Q ss_pred cceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC--CHHHHHHHHhhhh
Q 014440 85 IRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG--SPESHIKALMGKL 162 (424)
Q Consensus 85 iR~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~--d~~~~~~~L~~~~ 162 (424)
-.+|+++||.|+||.. +++..+++.++.|++.+....+..|+|||.| ++.+....|++. +.+++.++|..+.
T Consensus 21 ~~DivfvlD~S~Sm~~-----~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~f-s~~~~~~~~l~~~~~~~~~~~~i~~l~ 94 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIGE-----ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQY-SYMVTVEYPFSEAQSKGDILQRLREIR 94 (199)
T ss_dssp CCEEEEEEECCTTTCH-----HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEE-SSSEEEEECTTSCCCHHHHHHHHHHCC
T ss_pred CcCEEEEEECCCCCCH-----HHHHHHHHHHHHHHHhcCCCCCceEEEEEEE-CCcccEEEecCCcCCHHHHHHHHHhCc
Confidence 3499999999999964 5788999999999998765567899999999 589999999985 6777878887653
Q ss_pred CCCC-cchHHHHHHHHHHHHcCCC---CCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecc--hHHHHHHH
Q 014440 163 GCSG-DSSIQNALDLVHGLLNQIP---SYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA--EMFICKHL 236 (424)
Q Consensus 163 ~~~G-~tsL~~AL~~Al~~L~~~p---~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~--e~~iLq~i 236 (424)
...| +|.++.||..|++.+.... ....+++|||++++.+.|.. .+ + ..+|+|++||+|. +...|++|
T Consensus 95 ~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v--~~----~-~~~v~v~~iGiG~~~~~~~L~~i 167 (199)
T 3zqk_A 95 YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEI--KR----L-PGDIQVVPIGVGPNANVQELERI 167 (199)
T ss_dssp CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCC--CC----C-CTTEEEEEEEESTTCCHHHHHHH
T ss_pred CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHH--HH----H-hCCCEEEEEEcCCCCCHHHHHHH
Confidence 3344 5999999999998653210 11233556655444333321 11 1 3799999999984 57899999
Q ss_pred HHHhCCEEEEecChhhHHHHHHhcC
Q 014440 237 CQETGGTYSVALDESHSKELILEHA 261 (424)
Q Consensus 237 A~~TGG~Y~~~~d~~~L~~lL~~~~ 261 (424)
|. +|.++.+.|.+.|.+++.++.
T Consensus 168 A~--~~~~~~~~~~~~L~~~~~~l~ 190 (199)
T 3zqk_A 168 GW--PNAPILIQDFETLPREAPDLV 190 (199)
T ss_dssp HT--TSCCEEESCTTTHHHHHHHHH
T ss_pred hC--CCceEEeCCHHHHHHHHHHHH
Confidence 97 455557788888988877654
No 25
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.55 E-value=2.2e-15 Score=136.41 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=113.6
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCH--HHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP--ESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~--~~~~~~L~~~~~~ 164 (424)
+++++||.|+||.. +++..+++.+..|++.+ ..+..++|||.| ++.+....||+... +++...+..+...
T Consensus 4 divfvlD~S~Sm~~-----~~~~~~k~~~~~~~~~l--~~~~~rv~vv~f-s~~~~~~~~l~~~~~~~~~~~~~~~i~~~ 75 (179)
T 1mjn_A 4 DLVFLFDGSMSLQP-----DEFQKILDFMKDVMKKC--SNTSYQFAAVQF-STSYKTEFDFSDYVKRKDPDALLKHVKHM 75 (179)
T ss_dssp EEEEEEECBTTCCH-----HHHHHHHHHHHHHHHHT--TTSSEEEEEEEE-SSSEEEEECHHHHHHHCCHHHHHTTCCCC
T ss_pred cEEEEEeCCCCCCH-----HHHHHHHHHHHHHHHHh--CCCCeEEEEEEE-CCceeEEEcCcccCCHHHHHHHHHhcccC
Confidence 89999999999964 57889999999999886 233469999999 58899999987421 1233344433234
Q ss_pred CCcchHHHHHHHHHHHH-cCC--CCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecchH------HHHHH
Q 014440 165 SGDSSIQNALDLVHGLL-NQI--PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM------FICKH 235 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L-~~~--p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e~------~iLq~ 235 (424)
.|+|.++.||..|.+.+ ... .....+++|||++++...+.... +++.||+|++||+|... ..|++
T Consensus 76 ~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~------~~~~~i~i~~igvG~~~~~~~~~~~L~~ 149 (179)
T 1mjn_A 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNI------DAAKDIIRYIIGIGKHFQTKESQETLHK 149 (179)
T ss_dssp CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCC------GGGTTSEEEEEEESGGGCSHHHHHTTGG
T ss_pred CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcch------HHHCCCEEEEEEccccccccccHHHHHH
Confidence 68999999999999754 321 11234456666554443343321 36789999999999753 68999
Q ss_pred HHHHhCCEE-EEecChhhHHHHHHhc
Q 014440 236 LCQETGGTY-SVALDESHSKELILEH 260 (424)
Q Consensus 236 iA~~TGG~Y-~~~~d~~~L~~lL~~~ 260 (424)
||..++|.| |.+.+.+.|..++.++
T Consensus 150 iA~~~~~~~~~~~~~~~~L~~i~~~i 175 (179)
T 1mjn_A 150 FASKPASEFVKILDTFEKLKDLCTEL 175 (179)
T ss_dssp GSCSCHHHHEEEESSGGGSCCHHHHH
T ss_pred HhCCccHhcEEEeCCHHHHHHHHHHH
Confidence 999998864 6777878777766544
No 26
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=99.51 E-value=1.3e-13 Score=148.06 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=108.4
Q ss_pred eEEEEEeCCHhhhcCC--CCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCce----------EEeeCCCCCHHHH
Q 014440 87 YLYIVIDLSRAAAEMD--FRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA----------NCLTDLGGSPESH 154 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D--~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A----------~~lspLT~d~~~~ 154 (424)
.+|++||+|+||.+.| ..|+||+++++.+.+|++...-.+|.++||||.|+ +.+ +++.||+.-....
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfg-t~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYG-TEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-CSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEc-cCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 4899999999999998 48999999999999999987778999999999995 666 5677775322334
Q ss_pred HHHHhhhh------------CCCCcchHHHHHHHHHHHHcCCCCC-CCcEEEEEEcCCCCCCcc-----CHHHHHHHHHh
Q 014440 155 IKALMGKL------------GCSGDSSIQNALDLVHGLLNQIPSY-GHREVLILYSALSTCDPG-----DIMETIQKCKE 216 (424)
Q Consensus 155 ~~~L~~~~------------~~~G~tsL~~AL~~Al~~L~~~p~~-~~reILvI~ss~~t~dp~-----~i~~~i~~akk 216 (424)
++.|.+++ ...++++|++||..|..+|+..... .+|+|++|+++.+..+.. .+..+++.|++
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~ 195 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRD 195 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 44444332 2245799999999999999875322 356666677654433221 35678999999
Q ss_pred CCcEEEEEEecch
Q 014440 217 SKIRCSVIGLSAE 229 (424)
Q Consensus 217 ~~IrV~vIgLg~e 229 (424)
.||+|++||+|.+
T Consensus 196 ~gI~i~~igig~~ 208 (609)
T 1jey_A 196 TGIFLDLMHLKKP 208 (609)
T ss_dssp HTEEEEEEEBCCT
T ss_pred cCcEEEEEecCCC
Confidence 9999999999975
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.42 E-value=4.6e-14 Score=160.59 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=124.1
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCC--CHHHHHHHHhhhhCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG--SPESHIKALMGKLGC 164 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~--d~~~~~~~L~~~~~~ 164 (424)
+|++|||.|+||. ++++..+++.++.|++.|. .+..|+|||.| ++.+.++.||+. +.+++.+++..+...
T Consensus 132 DIvfvlD~SgSm~-----~~~f~~~k~fv~~lv~~~~--~~~~rVglV~F-s~~~~~~~~lt~~~~~~~l~~ai~~i~~~ 203 (1095)
T 3k6s_A 132 DIVFLIDGSGSIS-----SRNFATMMNFVRAVISQFQ--RPSTQFSLMQF-SNKFQTHFTFEEFRRSSNPLSLLASVHQL 203 (1095)
T ss_dssp EEEEEEECCTTSC-----SHHHHHHHHHHHHHHHSSC--SSSEEEEEEEE-SSSEEEEECSHHHHSCSCGGGGTTTCCCC
T ss_pred cEEEEEcCCCCCC-----hhHHHHHHHHHHHHHHhcc--ccccEEEEEEE-CCeEEEEecCcccCCHHHHHHHHhhhhcc
Confidence 9999999999996 5689999999999998764 34589999999 589999999974 333444445443345
Q ss_pred CCcchHHHHHHHHHHHHcCCC---CCCCcEEEEEEcCCCC-CCccCHHHHHHHHHhCCcEEEEEEecch------HHHHH
Q 014440 165 SGDSSIQNALDLVHGLLNQIP---SYGHREVLILYSALST-CDPGDIMETIQKCKESKIRCSVIGLSAE------MFICK 234 (424)
Q Consensus 165 ~G~tsL~~AL~~Al~~L~~~p---~~~~reILvI~ss~~t-~dp~~i~~~i~~akk~~IrV~vIgLg~e------~~iLq 234 (424)
.|+|.++.||..|++.+.... ....+++|||++++.. .|+.++.++++.+++.||+|++||+|.. ...|+
T Consensus 204 gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~ 283 (1095)
T 3k6s_A 204 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 283 (1095)
T ss_dssp CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHH
T ss_pred cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccccccccCHHHHH
Confidence 789999999999998775321 1223456665544443 5777888999999999999999999975 58999
Q ss_pred HHHHHhCC-EEEEecChhhHHHH
Q 014440 235 HLCQETGG-TYSVALDESHSKEL 256 (424)
Q Consensus 235 ~iA~~TGG-~Y~~~~d~~~L~~l 256 (424)
+||..++| .++.+.+.+.|+++
T Consensus 284 ~IAs~p~g~~vf~v~d~~~L~~i 306 (1095)
T 3k6s_A 284 DIASKPSQEHIFKVEDFDALKDI 306 (1095)
T ss_dssp TTSCSSTTTSCCCBSCSGGGGSS
T ss_pred HHHcCCCCceEEEcCCHHHHHHH
Confidence 99999987 56666776665444
No 28
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.24 E-value=2.4e-11 Score=128.52 Aligned_cols=145 Identities=6% Similarity=-0.025 Sum_probs=96.5
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHH--HHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhhhh-
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQ--VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL- 162 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~--l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~~~- 162 (424)
++++|+||+|+||...|.. +|++. ++. +..|+.. .+.+++|||+|. + +....|++.+.. +...+..+.
T Consensus 369 ~~v~lvvD~SgSM~~~~~~-~~l~~-~~~Aa~l~~~~~----~~~d~vglv~Fs-~-~~~~~~~t~~~~-l~~~l~~l~~ 439 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRVLG-SILNA-SVVAAAMCMLVA----RTEKDSHMVAFS-D-EMLPCPITVNML-LHEVVEKMSD 439 (538)
T ss_dssp CCEEEEEECSGGGGSBSTT-SSCBH-HHHHHHHHHHHH----HHCSSEEEEEES-S-SEECCSCCTTSC-HHHHHHHHTT
T ss_pred ceEEEEEECccccCCCCCC-CcHHH-HHHHHHHHHHHh----ccCCceEEEEEC-C-CceEcCCCCccc-HHHHHHHHhc
Confidence 4999999999999988876 56666 444 4445442 345789999995 4 566778886533 333333322
Q ss_pred CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhC-C--cEEEEEEecch----------
Q 014440 163 GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES-K--IRCSVIGLSAE---------- 229 (424)
Q Consensus 163 ~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~-~--IrV~vIgLg~e---------- 229 (424)
.+.|+|+++.||..|...- ...+.||||+++..+.+..+..+.++.+++. | |++++||+|+.
T Consensus 440 ~~~GgT~i~~aL~~a~~~~-----~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~~~~~~~~~~ 514 (538)
T 1yvr_A 440 ITMGSTDCALPMLWAQKTN-----TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGFSIADPDDR 514 (538)
T ss_dssp CCCSCCCTTHHHHHHHHTT-----CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEESSCTTCT
T ss_pred CCCCCCcHHHHHHHHHhcc-----CCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCCCcccCCCCC
Confidence 2678999999999998752 1234455555543333333456666555533 5 56699999863
Q ss_pred ---------HHHHHHHHHHhCCEE
Q 014440 230 ---------MFICKHLCQETGGTY 244 (424)
Q Consensus 230 ---------~~iLq~iA~~TGG~Y 244 (424)
..+|+.||+.|||.|
T Consensus 515 ~~~~i~g~~e~~l~~Ia~~~~G~~ 538 (538)
T 1yvr_A 515 GMLDICGFDSGALDVIRNFTLDLI 538 (538)
T ss_dssp TEEEEETTCTTHHHHHHHHHTTC-
T ss_pred CceeeccCCHHHHHHHHHHhCCCC
Confidence 268999999999975
No 29
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.05 E-value=1.7e-09 Score=114.43 Aligned_cols=148 Identities=7% Similarity=-0.036 Sum_probs=97.7
Q ss_pred ccccceEEEEEeCCHhhhcCCC----CCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHH
Q 014440 82 KGLIRYLYIVIDLSRAAAEMDF----RPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 157 (424)
Q Consensus 82 ~GiiR~lvlvLD~S~SM~~~D~----~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~ 157 (424)
+|+ +++|+||+|+||...+. ++++++.+...+ |+... . .+++|||+|. + .....|++.+ ..+.+.
T Consensus 361 ~~~--~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r--~--~d~v~lv~Fs-~-~~~~~~~~~~-~~l~~~ 429 (535)
T 2nvo_A 361 ANT--RHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALR--T--EPDALTMGFA-E-QFRPLGITPR-DTLESA 429 (535)
T ss_dssp CCS--EEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHH--H--SSEEEEEEEB-S-SEEECCCCTT-CCHHHH
T ss_pred CCc--eEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcC--c--CCceEEEEEC-C-cceEcCCCcc-hhHHHH
Confidence 454 89999999999987232 367777665443 44322 2 3589999995 4 4445677754 223344
Q ss_pred Hhhhh-CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhC---CcEEEEEEecch----
Q 014440 158 LMGKL-GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES---KIRCSVIGLSAE---- 229 (424)
Q Consensus 158 L~~~~-~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~---~IrV~vIgLg~e---- 229 (424)
|..+. .+.|+|+++.+|..|..... ....||||++........+..++++.+++. +++|++|+|++.
T Consensus 430 l~~l~~~~~ggTdi~~~l~~a~~~~~-----~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~~~~~ 504 (535)
T 2nvo_A 430 MQKAQSVSFGGTDCAQPILWAAQERL-----DVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATEFSI 504 (535)
T ss_dssp HHHTCCSSBCCCCTTHHHHHHHHTTC-----CCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSCCCC
T ss_pred HHHHhhCCCCCccHHHHHHHHHHhcC-----CCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCCCccc
Confidence 44332 23689999999988755432 133455555543333333567788888876 899999999962
Q ss_pred ---------------HHHHHHHHHHhCCEEE
Q 014440 230 ---------------MFICKHLCQETGGTYS 245 (424)
Q Consensus 230 ---------------~~iLq~iA~~TGG~Y~ 245 (424)
..+|+.||+.|||.|+
T Consensus 505 ~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~~ 535 (535)
T 2nvo_A 505 ADPQRRDMLDVVGFDAAAPNVMTAFARGEVL 535 (535)
T ss_dssp SCTTCSSEEEEEECCTTHHHHHHHHHTTCC-
T ss_pred CCCCCCCceeeeCCCHHHHHHHHHHhCCCcC
Confidence 2689999999999985
No 30
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.94 E-value=1.5e-09 Score=121.20 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=80.3
Q ss_pred hccccceEEEEEeCCHhhhcCCCC-CChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEE----------------
Q 014440 81 QKGLIRYLYIVIDLSRAAAEMDFR-PSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC---------------- 143 (424)
Q Consensus 81 r~GiiR~lvlvLD~S~SM~~~D~~-P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~---------------- 143 (424)
+.++ +||||||+|+||...++. .+||+.+++++..|++.+ ..+|.+|+|||.|. +.++.
T Consensus 222 ~~~~--DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L-~~~~~drVgLV~Fs-~~a~~~~~~~v~~~~~~~~g~ 297 (893)
T 2ww8_A 222 SVPL--DVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKI-TSDSENRVALVTYA-STIFDGTEFTVEKGVADKNGK 297 (893)
T ss_dssp TCCE--EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHH-HTSTTCEEEEEEES-SSBCBSCEEEEECCEECTTCC
T ss_pred CCCc--cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHh-hcCCCcEEEEEEec-Ccccccccccccccccccccc
Confidence 4555 999999999999876543 359999999999999654 44788999999995 54321
Q ss_pred -----------------------eeCCCCCHHHHH---HHHhhh---------hCCCCcchHHHHHHHHHHHHcCCCCCC
Q 014440 144 -----------------------LTDLGGSPESHI---KALMGK---------LGCSGDSSIQNALDLVHGLLNQIPSYG 188 (424)
Q Consensus 144 -----------------------lspLT~d~~~~~---~~L~~~---------~~~~G~tsL~~AL~~Al~~L~~~p~~~ 188 (424)
..|||.|..++. ..|... +.+.|+|.++.||.+|+++|.......
T Consensus 298 ~~n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~ 377 (893)
T 2ww8_A 298 RLNDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQN 377 (893)
T ss_dssp EECCCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSS
T ss_pred ccccccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccC
Confidence 236777775543 444321 234689999999999999997421123
Q ss_pred CcEEEEEE-cCC
Q 014440 189 HREVLILY-SAL 199 (424)
Q Consensus 189 ~reILvI~-ss~ 199 (424)
.+++|||+ ++.
T Consensus 378 ~~kvIILLTDG~ 389 (893)
T 2ww8_A 378 SQKVIFHITDGV 389 (893)
T ss_dssp SEEEEEEEESSC
T ss_pred CCeEEEEEcCCC
Confidence 44555554 443
No 31
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.61 E-value=6.4e-08 Score=92.57 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=70.8
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCc--eEEe-eCCCCCHHHHHHHHhhhhC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV--ANCL-TDLGGSPESHIKALMGKLG 163 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~--A~~l-spLT~d~~~~~~~L~~~~~ 163 (424)
+++|+||.|+||. .||..++..+.+++.++......+++|||+|.+.. ++.+ .|+|.+. .+...|..+ .
T Consensus 136 ~vvfLVDtSgSM~------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L-~ 207 (242)
T 3rag_A 136 HLVVCLDTSASMR------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAEL-V 207 (242)
T ss_dssp EEEEEEECSGGGT------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHC-C
T ss_pred CEEEEEECcccHH------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhC-C
Confidence 9999999999996 38999999999999887655557999999996432 5555 4998876 433445443 5
Q ss_pred CCCcchHHHHHHHHHHHHcC
Q 014440 164 CSGDSSIQNALDLVHGLLNQ 183 (424)
Q Consensus 164 ~~G~tsL~~AL~~Al~~L~~ 183 (424)
..|.|.++.||..|+++|++
T Consensus 208 agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 208 ARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp CCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHH
Confidence 68999999999999999853
No 32
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.59 E-value=2.7e-06 Score=79.96 Aligned_cols=162 Identities=17% Similarity=0.120 Sum_probs=114.4
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCCHHHHHHHHhhhhCCCC
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSG 166 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d~~~~~~~L~~~~~~~G 166 (424)
+||+++|+|.||.. -++.+++.+.++++++-..+...|+|++.|.+.......|||.|...+.+.+.... ..|
T Consensus 5 Dl~fl~D~S~SM~~------di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~-vsg 77 (212)
T 2iue_A 5 DLYFLMGLSGSAQG------HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQL-VSG 77 (212)
T ss_dssp EEEEEEECCGGGTT------THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCC-CCC
T ss_pred EEEEEEeCCCcchh------HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhcc-ccC
Confidence 89999999999974 48888888998888887666779999999988766777899999999999997642 111
Q ss_pred ----cchHHHHHHHHHH---HHcCCCCCCCcEEEEEEcCCCC-------------------------------CCccCHH
Q 014440 167 ----DSSIQNALDLVHG---LLNQIPSYGHREVLILYSALST-------------------------------CDPGDIM 208 (424)
Q Consensus 167 ----~tsL~~AL~~Al~---~L~~~p~~~~reILvI~ss~~t-------------------------------~dp~~i~ 208 (424)
.-+--.||..|+. .+.=. . .+++||++++... -|+..+.
T Consensus 78 ~~D~PE~g~dal~qa~~c~~~i~Wr--~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~ 154 (212)
T 2iue_A 78 KLATPKGQLDAVVQVAICLGEIGWR--N-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVV 154 (212)
T ss_dssp CSSSSBCHHHHHHHHHHCHHHHTCC--S-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHH
T ss_pred CCCCCchHHHHHHHHHHhhhhcccC--C-ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHH
Confidence 1133445655553 23333 2 5677777753211 1334677
Q ss_pred HHHHHHHhCCcEEEEEEecchHHHHHHHHHHhCCEEEEe--cChhhHHHHHH
Q 014440 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVA--LDESHSKELIL 258 (424)
Q Consensus 209 ~~i~~akk~~IrV~vIgLg~e~~iLq~iA~~TGG~Y~~~--~d~~~L~~lL~ 258 (424)
++.+.+++++|.+...-=.......+++++..+|..... .|...+.+|+.
T Consensus 155 q~~~~l~~~~i~~ifavt~~~~~~Y~~l~~~i~~s~v~~L~~dSsni~~li~ 206 (212)
T 2iue_A 155 QLASKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGELSDDSSNVAQLIR 206 (212)
T ss_dssp HHHHHHHHHTCEEEEEEEHHHHHHHHHHHHHSTTCEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEccchhHHHHHHHHHcccceeeeecCCcHHHHHHHH
Confidence 889999899987654444445677899999988887743 44555655554
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.43 E-value=6.2e-07 Score=85.72 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch-------HHHHHHHHHHhCCEEEEecC
Q 014440 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE-------MFICKHLCQETGGTYSVALD 249 (424)
Q Consensus 189 ~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e-------~~iLq~iA~~TGG~Y~~~~d 249 (424)
.|.||+|+++.+++.. +..++++.|++.||+|++||+|.. ...|++||+.|||.||.+..
T Consensus 10 ~k~iillTDG~~~~g~-~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 10 IRQILVITDGCSNIGP-DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp EEEEEEEESSCCCSSS-CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred ccEEEEEccCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 3445555555555543 677889999999999999999642 37899999999999999844
No 34
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.37 E-value=7.1e-06 Score=90.38 Aligned_cols=165 Identities=15% Similarity=0.146 Sum_probs=111.4
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCC---------------
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS--------------- 150 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d--------------- 150 (424)
...++|||+|.+.. ++..+++.++.+++.+ .|..+||||+| ++..++ ..+..+
T Consensus 133 p~~vFvIDvS~~a~-------~l~~l~~si~~~L~~L---p~~~~VGlITf-~~~v~~-y~l~~~~~~~~~vf~G~k~~~ 200 (769)
T 2nut_A 133 LIFLYVVDTCMEDE-------DLQALKESMQMSLSLL---PPTALVGLITF-GRMVQV-HELGCEGISKSYVFRGTKDLS 200 (769)
T ss_dssp CEEEEEEECCSCHH-------HHHHHHHHHHHHHTTS---CTTCEEEEEEE-SSEEEE-EESSCCSSCEEEEEETTSCCC
T ss_pred CEEEEEEECCccHH-------HHHHHHHHHHHHHHhC---CCCceEEEEEe-CCEEEE-EeCCCCCCccceeecCCcccc
Confidence 36899999998854 5899999999998753 35689999999 465554 111110
Q ss_pred ------------------------------------H---HHHHH-HHhhhhC--------CCCcchHHHHHHHHHHHHc
Q 014440 151 ------------------------------------P---ESHIK-ALMGKLG--------CSGDSSIQNALDLVHGLLN 182 (424)
Q Consensus 151 ------------------------------------~---~~~~~-~L~~~~~--------~~G~tsL~~AL~~Al~~L~ 182 (424)
. +..+. .|.++.. ..+.++++.||..|..+|+
T Consensus 201 ~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~ 280 (769)
T 2nut_A 201 AKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLE 280 (769)
T ss_dssp SHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHh
Confidence 0 11111 2222111 1456899999999999998
Q ss_pred CCCCCCCcEEEEEEcCCCCCCccC------------------------------HHHHHHHHHhCCcEEEEEEecch---
Q 014440 183 QIPSYGHREVLILYSALSTCDPGD------------------------------IMETIQKCKESKIRCSVIGLSAE--- 229 (424)
Q Consensus 183 ~~p~~~~reILvI~ss~~t~dp~~------------------------------i~~~i~~akk~~IrV~vIgLg~e--- 229 (424)
..-.....+|++++++.-+..||. +.+.+..+.++||.|++..++.+
T Consensus 281 ~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vd 360 (769)
T 2nut_A 281 CTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 360 (769)
T ss_dssp HHSCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCC
T ss_pred hcccCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccC
Confidence 421123467888887655433331 23467888999999999999964
Q ss_pred HHHHHHHHHHhCCEEEEecC--hhhHHHHHHhcCC
Q 014440 230 MFICKHLCQETGGTYSVALD--ESHSKELILEHAP 262 (424)
Q Consensus 230 ~~iLq~iA~~TGG~Y~~~~d--~~~L~~lL~~~~~ 262 (424)
+..|+.+++.|||..+...+ ...+++-|...+.
T Consensus 361 la~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~ 395 (769)
T 2nut_A 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769)
T ss_dssp HHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred hHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHh
Confidence 78999999999998887543 3345555555554
No 35
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.29 E-value=2.1e-05 Score=87.15 Aligned_cols=152 Identities=11% Similarity=0.176 Sum_probs=104.9
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCC-----------------
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG----------------- 148 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT----------------- 148 (424)
...++|||+|.++.+. ..|..+++.+..-++.+.+.+|..+||||+|. +..++. .+.
T Consensus 188 p~yvFvIDvs~~av~~----g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd-~~V~~~-~l~~~~~g~k~~~~q~~mlv 261 (810)
T 1pcx_A 188 ATYCFLIDVSQSSIKS----GLLATTINTLLQNLDSIPNHDERTRISILCVD-NAIHYF-KIPLDSENNEESADQINMMD 261 (810)
T ss_dssp CEEEEEEECSHHHHHH----THHHHHHHHHHHHTTTSCCTTSCCEEEEEEES-SSEEEE-ECCCGGGC-------CEEEC
T ss_pred cEEEEEEECChHHHhh----hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEE-ecCccccCccccccchhhcc
Confidence 3789999999987543 24778888888777665555557899999993 444332 111
Q ss_pred --------------------CCHH---HHHHHHhhhh--CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCC
Q 014440 149 --------------------GSPE---SHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCD 203 (424)
Q Consensus 149 --------------------~d~~---~~~~~L~~~~--~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~d 203 (424)
.... .+++.|.... ...++++++.||..|..+|+.. .++|++++++.-|..
T Consensus 262 v~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~----GGrI~~F~sg~pt~G 337 (810)
T 1pcx_A 262 IADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV----GGKIIVVSGTLPNLG 337 (810)
T ss_dssp CCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT----CEEEEEEESSCCCSS
T ss_pred ccccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc----CCEEEEEecCCCCCC
Confidence 1111 1223333222 2356789999999999999863 457888888754433
Q ss_pred ccC--------------------------HHHHHHHHHhCCcEEEEEEecc---hHHHHHHHHHHhCCEEEEe
Q 014440 204 PGD--------------------------IMETIQKCKESKIRCSVIGLSA---EMFICKHLCQETGGTYSVA 247 (424)
Q Consensus 204 p~~--------------------------i~~~i~~akk~~IrV~vIgLg~---e~~iLq~iA~~TGG~Y~~~ 247 (424)
||. +.+.+..+.+.+|.|++..++. ++..|+.+++.|||.-+..
T Consensus 338 pG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y 410 (810)
T 1pcx_A 338 IGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFY 410 (810)
T ss_dssp TTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEE
T ss_pred CCcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEc
Confidence 331 2345777889999999999986 4789999999999976654
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.28 E-value=9.2e-06 Score=88.37 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=109.3
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCce-------------------------
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA------------------------- 141 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A------------------------- 141 (424)
+||++||+|.||.. =|+.++..+.+|++++-.....-|||+++|.|+..
T Consensus 113 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~ 186 (690)
T 3fcs_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (690)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCC
T ss_pred cEEEEecCCcchHH------HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCC
Confidence 99999999999974 56777777777777776666678999999986321
Q ss_pred ----EEeeCCCCCHHHHHHHHhhhhCCCCc----chHHHHHHHHH---HHHcCCCCCCCcEEEEEEcCCCC---------
Q 014440 142 ----NCLTDLGGSPESHIKALMGKLGCSGD----SSIQNALDLVH---GLLNQIPSYGHREVLILYSALST--------- 201 (424)
Q Consensus 142 ----~~lspLT~d~~~~~~~L~~~~~~~G~----tsL~~AL~~Al---~~L~~~p~~~~reILvI~ss~~t--------- 201 (424)
..+.|||.|...+.+.+.... ..|+ -+--.||..|+ ..+.=. ...+++||++++...
T Consensus 187 ~f~f~~~l~lt~~~~~f~~~v~~~~-isgn~D~PE~g~dAl~qa~~c~~~igWr--~~a~rllv~~TDa~~H~agDg~l~ 263 (690)
T 3fcs_B 187 MFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWR--NDASHLLVFTTDAKTHIALDGRLA 263 (690)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCC--SSSEEEEEEEESSCBCCTTGGGGG
T ss_pred CccceeecccCCCHHHHHHHhhcee-ccCCCCCCchHHHHHHHHhhcccccCCC--CCceEEEEEECCCccccCCCcccc
Confidence 124688999999988887643 1121 12345666665 344332 235677777654221
Q ss_pred -----------------------CCccCHHHHHHHHHhCCcEEEEEEecchHHHHHHHHHHhCCEEEEec--ChhhHHHH
Q 014440 202 -----------------------CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVAL--DESHSKEL 256 (424)
Q Consensus 202 -----------------------~dp~~i~~~i~~akk~~IrV~vIgLg~e~~iLq~iA~~TGG~Y~~~~--d~~~L~~l 256 (424)
-|+..+.+..+.|++++|.+....-.....+.+++++...|.+...+ |...+.+|
T Consensus 264 gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i~~s~v~~l~~dSsni~~l 343 (690)
T 3fcs_B 264 GIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQL 343 (690)
T ss_dssp TCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHSTTCEEEEECTTCTTHHHH
T ss_pred ceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhcCCceeeeeccccHHHHHH
Confidence 23335788999999999986666566667888999988888776543 33334444
Q ss_pred H
Q 014440 257 I 257 (424)
Q Consensus 257 L 257 (424)
+
T Consensus 344 i 344 (690)
T 3fcs_B 344 I 344 (690)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.14 E-value=4.5e-05 Score=85.45 Aligned_cols=153 Identities=11% Similarity=0.179 Sum_probs=104.0
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEe---------------------
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL--------------------- 144 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~l--------------------- 144 (424)
...++|||+|.+..+. ..|..+++.|+.-++.+.+.+|..+||||+|. +..++.
T Consensus 304 pvyvFvIDvS~~av~~----g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFd-s~Vh~y~l~~~~~g~k~~~~q~qmlvv 378 (926)
T 1m2v_B 304 ATYCFLIDVSQSSIKS----GLLATTINTLLQNLDSIPNHDERTRISILCVD-NAIHYFKIPLDSENNEESADQINMMDI 378 (926)
T ss_dssp CBEEEEEECSHHHHHS----CHHHHHHHHHHHTTTTSCCTTSCCEECEEEES-SSEEEEECCCC---------CCEEEEE
T ss_pred cEEEEEEECCHHHHhh----hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEecCCcccCCcccccchhhccc
Confidence 3689999999887543 25778888888777655444456899999994 433321
Q ss_pred e---------------CCCCCHHH---HHHHHhhhh--CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCc
Q 014440 145 T---------------DLGGSPES---HIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDP 204 (424)
Q Consensus 145 s---------------pLT~d~~~---~~~~L~~~~--~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp 204 (424)
+ |+...... +++.|.... ....+++++.||..|..+|+.. ..+|++++++.-|..|
T Consensus 379 sdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~----GGrI~~F~sg~Pt~Gp 454 (926)
T 1m2v_B 379 ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV----GGKIIVVSGTLPNLGI 454 (926)
T ss_dssp CCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT----CEEEEEEESSCCCSST
T ss_pred cccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh----CCEEEEEecCCCCCCC
Confidence 1 11111122 223333222 2356789999999999999863 4578888886544333
Q ss_pred cC--------------------------HHHHHHHHHhCCcEEEEEEecc---hHHHHHHHHHHhCCEEEEe
Q 014440 205 GD--------------------------IMETIQKCKESKIRCSVIGLSA---EMFICKHLCQETGGTYSVA 247 (424)
Q Consensus 205 ~~--------------------------i~~~i~~akk~~IrV~vIgLg~---e~~iLq~iA~~TGG~Y~~~ 247 (424)
|. +.+.+..+.+.+|.||+..++. ++..|+.+++.|||.-+..
T Consensus 455 G~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y 526 (926)
T 1m2v_B 455 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFY 526 (926)
T ss_dssp TCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEE
T ss_pred CcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEc
Confidence 31 2355778889999999999986 4789999999999976644
No 38
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=97.99 E-value=0.00028 Score=77.73 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=108.8
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEEeeCCCCC---------------
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS--------------- 150 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~lspLT~d--------------- 150 (424)
...++|||+|.++. .|..+++.|+..++.+ .|..+||||+| ++..+ +..+..+
T Consensus 122 p~~vFvIDvs~~~~-------~l~~l~~sl~~~L~~L---p~~~~VGlITf-~~~V~-~y~l~~~~~~~~~V~~g~k~~~ 189 (768)
T 1m2o_A 122 PIFFFVVDLTSETE-------NLDSLKESIITSLSLL---PPNALIGLITY-GNVVQ-LHDLSSETIDRCNVFRGDREYQ 189 (768)
T ss_dssp CEEEEEEECCSCHH-------HHHHHHHHHHHHHHTS---CTTCEEEEEEE-SSEEE-ECCCSSSSSEEEEEEETTSCCC
T ss_pred CEEEEEEECCcCHH-------HHHHHHHHHHHHHHhC---CCCCEEEEEEE-CCEEE-EEECCCCCCcceeeecCCcccc
Confidence 37899999998875 4788888888888754 35689999999 34333 3333221
Q ss_pred ---H-----------------------------------------HHHHH-HHhhhhC---C-----CCcchHHHHHHHH
Q 014440 151 ---P-----------------------------------------ESHIK-ALMGKLG---C-----SGDSSIQNALDLV 177 (424)
Q Consensus 151 ---~-----------------------------------------~~~~~-~L~~~~~---~-----~G~tsL~~AL~~A 177 (424)
. +..+. .|.++.. + .+.++++.||..|
T Consensus 190 ~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A 269 (768)
T 1m2o_A 190 LEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIA 269 (768)
T ss_dssp HHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHH
Confidence 0 00111 1222111 1 2456899999999
Q ss_pred HHHHcCCCCCCCcEEEEEEcCCCCCCccC------------------------------HHHHHHHHHhCCcEEEEEEec
Q 014440 178 HGLLNQIPSYGHREVLILYSALSTCDPGD------------------------------IMETIQKCKESKIRCSVIGLS 227 (424)
Q Consensus 178 l~~L~~~p~~~~reILvI~ss~~t~dp~~------------------------------i~~~i~~akk~~IrV~vIgLg 227 (424)
..+|+..-.....+|++++++.-+..||. +.+.+..+.++||.|++..++
T Consensus 270 ~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~ 349 (768)
T 1m2o_A 270 SLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGC 349 (768)
T ss_dssp HHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHhhccCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEcc
Confidence 99998421123467888887755433331 124466788899999999998
Q ss_pred c---hHHHHHHHHHHhCCEEEEec--ChhhHHHHHHhcCCC
Q 014440 228 A---EMFICKHLCQETGGTYSVAL--DESHSKELILEHAPP 263 (424)
Q Consensus 228 ~---e~~iLq~iA~~TGG~Y~~~~--d~~~L~~lL~~~~~p 263 (424)
. ++..|+.+++.|||.-+... +...|++-+...+.-
T Consensus 350 ~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~~ 390 (768)
T 1m2o_A 350 YDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 390 (768)
T ss_dssp SSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred CCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHhh
Confidence 5 47899999999999766543 334566666666653
No 39
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.94 E-value=1.4e-05 Score=86.86 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=105.7
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCc--------------------------
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV-------------------------- 140 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~-------------------------- 140 (424)
+||++||+|.||.. =|+.++..+.++++++-.....-|||+++|.|+.
T Consensus 106 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~ 179 (687)
T 3k6s_B 106 DLYYLMDLSYSMLD------DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPP 179 (687)
T ss_dssp EEEEEEECSSTTHH------HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCC
T ss_pred eEEEEEcCCcchHH------HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCc
Confidence 99999999999974 5666777777777777666777899999998632
Q ss_pred --eEEeeCCCCCHHHHHHHHhhhhCCCCc----chHHHHHHHHH---HHHcCCCCCCCcEEEEEEcCCCC----------
Q 014440 141 --ANCLTDLGGSPESHIKALMGKLGCSGD----SSIQNALDLVH---GLLNQIPSYGHREVLILYSALST---------- 201 (424)
Q Consensus 141 --A~~lspLT~d~~~~~~~L~~~~~~~G~----tsL~~AL~~Al---~~L~~~p~~~~reILvI~ss~~t---------- 201 (424)
...+.+||.|...+.+.+..... .|+ -+--.||..|+ ..+.=. . .+++||++++...
T Consensus 180 f~f~~~l~lt~~~~~F~~~v~~~~i-sgn~D~PE~g~dAl~qa~vc~~~igWr--~-a~rllV~~TDa~~H~agDg~l~g 255 (687)
T 3k6s_B 180 FAFRHVLKLTNNSNQFQTEVGKQLI-SGNLDAPEGGLDAMMQVAACPEEIGWR--N-VTRLLVFATDDGFHFAGDGKLGA 255 (687)
T ss_dssp CSCEEEEEEESCSHHHHHHHHTSCC-CCCSSSSCCHHHHHHHHTTCHHHHCCC--S-SCCEEEEECSSCCCCTTGGGGGT
T ss_pred ccceeecccCCCHHHHHHHHhhccc-cCCCCCCchHHHHHHHHhhcccccCCc--c-ceEEEEEECCCccccCCCccccc
Confidence 11246789999999888876431 111 12335555554 444433 2 5567777653221
Q ss_pred ---------------------CCccCHHHHHHHHHhCCcEEEEEEecchHHHHHHHHHHhCCEEEEecChh
Q 014440 202 ---------------------CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDES 251 (424)
Q Consensus 202 ---------------------~dp~~i~~~i~~akk~~IrV~vIgLg~e~~iLq~iA~~TGG~Y~~~~d~~ 251 (424)
-|+..+.+..+.|++++|.+....-.....+.+++++.-+|.+...+..+
T Consensus 256 i~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i~~s~v~~L~~d 326 (687)
T 3k6s_B 256 ILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSED 326 (687)
T ss_dssp CCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHSSSCCEEECCTT
T ss_pred eecCCCCccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhhcCCceeeeeccc
Confidence 23334678899999999986666666667889999988888777655443
No 40
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.88 E-value=0.00071 Score=70.28 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=108.5
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCce-------------------------
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA------------------------- 141 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A------------------------- 141 (424)
+||+++|+|.||.. =|+.++....++++++-.....-|+|+.+|.|+..
T Consensus 113 DLy~LmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p 186 (472)
T 3t3p_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (472)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCC
T ss_pred eEEEEEccCcchHH------HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCC
Confidence 99999999999974 67788888888888888777788999999986421
Q ss_pred ---E-EeeCCCCCHHHHHHHHhhhhCCCCc----chHHHHHHHHH---HHHcCCCCCCCcEEEEEEcCCC----------
Q 014440 142 ---N-CLTDLGGSPESHIKALMGKLGCSGD----SSIQNALDLVH---GLLNQIPSYGHREVLILYSALS---------- 200 (424)
Q Consensus 142 ---~-~lspLT~d~~~~~~~L~~~~~~~G~----tsL~~AL~~Al---~~L~~~p~~~~reILvI~ss~~---------- 200 (424)
+ .+.|||.|...+.+.+.... ..|+ -+--.||..|. ..+.=. ...+++||++++..
T Consensus 187 ~f~fr~~l~LT~d~~~F~~~V~~~~-iSGn~D~PEgg~dAl~qaavC~~~igWR--~~a~rllV~~TDa~~H~agDgkL~ 263 (472)
T 3t3p_B 187 MFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWR--NDASHLLVFTTDAKTHIALDGRLA 263 (472)
T ss_dssp CCSEEEEEEEESCHHHHHHHHHHCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCC--SSSEEEEEEEESSCBCCTTGGGGG
T ss_pred CcceeEeeccCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHhcchhhcCCC--CCceEEEEEECCCCcCcCCCcccc
Confidence 1 25688999999988887642 1111 12335555555 234322 23566777764311
Q ss_pred ----------------------CCCccCHHHHHHHHHhCCcEE-EEEEecchHHHHHHHHHHhCCEEEEec--ChhhHHH
Q 014440 201 ----------------------TCDPGDIMETIQKCKESKIRC-SVIGLSAEMFICKHLCQETGGTYSVAL--DESHSKE 255 (424)
Q Consensus 201 ----------------------t~dp~~i~~~i~~akk~~IrV-~vIgLg~e~~iLq~iA~~TGG~Y~~~~--d~~~L~~ 255 (424)
.-|+..+-+..+.+.+++|.+ ++| -.....+.+++++.-.|...-.+ |...+-+
T Consensus 264 GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~IFAV-t~~~~~~Y~~L~~~ip~s~vg~L~~dSsNiv~ 342 (472)
T 3t3p_B 264 GIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAV-TENVVNLYQNYSELIPGTTVGVLSMDSSNVLQ 342 (472)
T ss_dssp TCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHHHHTSTTCEEEECCTTSTTHHH
T ss_pred ceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEEEEE-eccchhHHHHHHHhCCCceeeeccccchhHHH
Confidence 124446788999999999874 333 23345788999988877766443 3344444
Q ss_pred HHH
Q 014440 256 LIL 258 (424)
Q Consensus 256 lL~ 258 (424)
|+.
T Consensus 343 LI~ 345 (472)
T 3t3p_B 343 LIV 345 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 41
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.84 E-value=0.00077 Score=69.65 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=110.2
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCc--------------------------
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV-------------------------- 140 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~-------------------------- 140 (424)
+||+++|+|.||.. -|+.++....++++++-.....-|||+..|.|+.
T Consensus 124 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f 197 (454)
T 3vi3_B 124 DLYYLMDLSYSMKD------DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPF 197 (454)
T ss_dssp EEEEEEECSGGGHH------HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCC
T ss_pred eEEEEecCCcchhh------HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCc
Confidence 99999999999984 6788888899999888887788899999998641
Q ss_pred eE-EeeCCCCCHHHHHHHHhhhhC------CCCcchHHHHHHHHHH---HHcCCCCCCCcEEEEEEcCCC----------
Q 014440 141 AN-CLTDLGGSPESHIKALMGKLG------CSGDSSIQNALDLVHG---LLNQIPSYGHREVLILYSALS---------- 200 (424)
Q Consensus 141 A~-~lspLT~d~~~~~~~L~~~~~------~~G~tsL~~AL~~Al~---~L~~~p~~~~reILvI~ss~~---------- 200 (424)
.+ .+.|||.|...+.+.+....- |.| --.||..|.- .+.=. . .+++||++++..
T Consensus 198 ~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEg---g~DAl~Qaavc~~~igWR--~-a~rllV~~TDa~fH~agDgkL~ 271 (454)
T 3vi3_B 198 SYKNVLSLTNKGEVFNELVGKQRISGNLDSPEG---GFDAIMQVAVCGSLIGWR--N-VTRLLVFSTDAGFHFAGDGKLG 271 (454)
T ss_dssp SEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBC---HHHHHHHHHHCHHHHTCC--S-SEEEEEEEESSCBCCTTTTGGG
T ss_pred ceeeeeecCCCHHHHHHHHhhccccCCCcCCch---hHHHHHHHhccccccCCc--c-ceEEEEEECCCCcCcCCCcccc
Confidence 11 367899999999888876421 233 2345544432 23322 2 667777765311
Q ss_pred ---------------------CCCccCHHHHHHHHHhCCcE-EEEEEecchHHHHHHHHHHhCCEEEEec--ChhhHHHH
Q 014440 201 ---------------------TCDPGDIMETIQKCKESKIR-CSVIGLSAEMFICKHLCQETGGTYSVAL--DESHSKEL 256 (424)
Q Consensus 201 ---------------------t~dp~~i~~~i~~akk~~Ir-V~vIgLg~e~~iLq~iA~~TGG~Y~~~~--d~~~L~~l 256 (424)
.-|+..+-+..+.+.+++|. |++| -.....+.+++++.-.|...-.+ |...+-+|
T Consensus 272 GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~IFAV-t~~~~~~Y~~L~~~ip~s~vg~Ls~dSsNiv~L 350 (454)
T 3vi3_B 272 GIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAV-TEEFQPVYKELKNLIPKSAVGTLSANSSNVIQL 350 (454)
T ss_dssp TCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEEEEEE-EGGGHHHHHHHHHHSTTEEEEEECTTCTTHHHH
T ss_pred ceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcEEEEE-cCccchHHHHHHHhCCCceeeEccccchhHHHH
Confidence 13555788999999999997 4444 22345788999999888776543 33445555
Q ss_pred HH
Q 014440 257 IL 258 (424)
Q Consensus 257 L~ 258 (424)
+.
T Consensus 351 I~ 352 (454)
T 3vi3_B 351 II 352 (454)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 42
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.74 E-value=0.00085 Score=73.69 Aligned_cols=151 Identities=16% Similarity=0.215 Sum_probs=98.3
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCceEE--------------ee------
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC--------------LT------ 145 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~A~~--------------ls------ 145 (424)
...++|||+|..-.+.. =|..+++.+...++.+. .++..+||||+|. ...++ ++
T Consensus 161 p~yvFvIDvs~~a~~~g----~l~~~~~sl~~~L~~lp-~~~~~~VG~ITfd-~~vh~y~l~~~~~~~qmlvv~dl~d~f 234 (751)
T 3eh1_A 161 AVYLFVLDVSHNAVEAG----YLTILCQSLLENLDKLP-GDSRTRIGFMTFD-STIHFYNLQEGLSQPQMLIVSDIDDVF 234 (751)
T ss_dssp CEEEEEEECSHHHHHHT----HHHHHHHHHHHHTTTSS-CCTTCEEEEEEES-SSEEEEECCTTCSSCEEEEESCTTCTT
T ss_pred cEEEEEEEccHhhhhhh----HHHHHHHHHHHHHHhcC-CCcCcEEEEEEeC-CEEEEEECCCCcccceeeccccccccC
Confidence 47899999996543221 46667777776665432 2444589999994 43221 11
Q ss_pred -C--------CCCCHHHHHHH-Hhhh---h--CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCccC----
Q 014440 146 -D--------LGGSPESHIKA-LMGK---L--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD---- 206 (424)
Q Consensus 146 -p--------LT~d~~~~~~~-L~~~---~--~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~~---- 206 (424)
| +... +..++. |.++ . ....+.+++.||+.|..+|+.. .++|+++.++.-|..||.
T Consensus 235 ~P~~~~~lv~l~e~-~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~----GGrI~~F~sg~pt~GpG~l~~r 309 (751)
T 3eh1_A 235 LPTPDSLLVNLYES-KELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT----GGRVSVFQTQLPSLGAGLLQSR 309 (751)
T ss_dssp SCCGGGTSEETTTT-HHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT----CEEEEEEECSCCCSSTTCCCCC
T ss_pred CCChhhhcccHHHH-HHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC----CCEEEEEecCCCCCCCCccccc
Confidence 1 1111 222222 2222 1 1234579999999999999753 457888887644433331
Q ss_pred ---------------------HHHHHHHHHhCCcEEEEEEecc---hHHHHHHHHHHhCCEEEEe
Q 014440 207 ---------------------IMETIQKCKESKIRCSVIGLSA---EMFICKHLCQETGGTYSVA 247 (424)
Q Consensus 207 ---------------------i~~~i~~akk~~IrV~vIgLg~---e~~iLq~iA~~TGG~Y~~~ 247 (424)
+.+.+..+.+++|.||+..++. ++..|+.+++.|||.-+..
T Consensus 310 ~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y 374 (751)
T 3eh1_A 310 EDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYY 374 (751)
T ss_dssp CCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEEC
T ss_pred cccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEe
Confidence 2366888999999999999885 4789999999999977764
No 43
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=97.53 E-value=0.00074 Score=70.53 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=107.7
Q ss_pred eEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecCCc--------------------------
Q 014440 87 YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV-------------------------- 140 (424)
Q Consensus 87 ~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~qnP~sqlGII~~~~g~-------------------------- 140 (424)
+||+++|+|.||.. =|+.++....++++++-.....-|+|+.+|.|+.
T Consensus 134 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~ 207 (503)
T 3v4v_B 134 DLYYLMDLSYSMKD------DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSP 207 (503)
T ss_dssp EEEEEEECSGGGHH------HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCC
T ss_pred eEEEEEecCcchhh------HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCC
Confidence 99999999999984 6788888888898888877788899999998641
Q ss_pred -eE-EeeCCCCCHHHHHHHHhhhhCCCCc----chHHHHHHHHH---HHHcCCCCCCCcEEEEEEcCCC-----------
Q 014440 141 -AN-CLTDLGGSPESHIKALMGKLGCSGD----SSIQNALDLVH---GLLNQIPSYGHREVLILYSALS----------- 200 (424)
Q Consensus 141 -A~-~lspLT~d~~~~~~~L~~~~~~~G~----tsL~~AL~~Al---~~L~~~p~~~~reILvI~ss~~----------- 200 (424)
.+ -+.|||.|...+.+.+.... ..|+ -.--.||..|. +.+.=.+ .+++||++++..
T Consensus 208 f~fr~~l~LT~d~~~F~~~V~~~~-iSGnlD~PEggfDAlmQaavC~~~IgWR~---a~rllV~~TDA~fH~agDgkLaG 283 (503)
T 3v4v_B 208 FSFHHVLSLTGDAQAFEREVGRQS-VSGNLDSPEGGFDAILQAALCQEQIGWRN---VSRLLVFTSDDTFHTAGDGKLGG 283 (503)
T ss_dssp CSEEEEEEEESCSHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCS---SEEEEEEEESSCBCCTTGGGTTT
T ss_pred cceEEEEEecCCHHHHHHHHhhcC-ccCCCCCCchHHHHHHHHhhcccccCCCc---ceEEEEEECCCCcCcCCCccccc
Confidence 11 25688999889988887542 1111 12334555554 3443332 456777664311
Q ss_pred ---------------------CCCccCHHHHHHHHHhCCcEEEEEEec-chHHHHHHHHHHhCCEEEEecCh--hhHHHH
Q 014440 201 ---------------------TCDPGDIMETIQKCKESKIRCSVIGLS-AEMFICKHLCQETGGTYSVALDE--SHSKEL 256 (424)
Q Consensus 201 ---------------------t~dp~~i~~~i~~akk~~IrV~vIgLg-~e~~iLq~iA~~TGG~Y~~~~d~--~~L~~l 256 (424)
.-|+..+-+..+.+.+++|.+- .++. ....+.+++++.-.|...-.+.+ ..+-+|
T Consensus 284 Iv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~I-FAVt~~~~~~Y~~L~~~ip~s~vg~Ls~dSsNiv~L 362 (503)
T 3v4v_B 284 IFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPI-FAVTSAALPVYQELSKLIPKSAVGELSEDSSNVVQL 362 (503)
T ss_dssp CCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEE-EEECSSSHHHHHHHHTTSTTCEEEECCTTSCTHHHH
T ss_pred eecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEE-EEEcccchhHHHHHHHhCCCceeeEccccchhHHHH
Confidence 1244467788999999999633 3333 34678899998888877654433 344444
Q ss_pred HH
Q 014440 257 IL 258 (424)
Q Consensus 257 L~ 258 (424)
+.
T Consensus 363 I~ 364 (503)
T 3v4v_B 363 IM 364 (503)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.48 E-value=0.002 Score=70.97 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=100.4
Q ss_pred ceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhcc----CCCCcEEEEEecCCceEE--------------ee--
Q 014440 86 RYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQ----NPLSQIGLVTVKDGVANC--------------LT-- 145 (424)
Q Consensus 86 R~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~q----nP~sqlGII~~~~g~A~~--------------ls-- 145 (424)
-..++|||+|..--.. .-+..+++.++..++.+.+. .|..+||+|+|. ...++ ++
T Consensus 174 p~y~FvIDvs~~av~s----g~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd-~~vh~y~l~~~~~~~q~~vv~dl 248 (766)
T 3eh2_A 174 PAFIFMIDVSYNAIRT----GLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYN-KVLHFYNVKSSLAQPQMMVVSDV 248 (766)
T ss_dssp CEEEEEEECSHHHHHT----THHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEES-SSEEEEECCTTCSSCEEEEECCT
T ss_pred CEEEEEEECchhhccc----hHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeC-CEEEEEECCCCCCCceEEEecCh
Confidence 4778999999654322 24677778877777654321 123689999994 33222 11
Q ss_pred -----CCC--------CCHH---HHHHHHhhhh--CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCC-CCCCcc-
Q 014440 146 -----DLG--------GSPE---SHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSAL-STCDPG- 205 (424)
Q Consensus 146 -----pLT--------~d~~---~~~~~L~~~~--~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~-~t~dp~- 205 (424)
|+. .... .+++.|.... .+..++.++.||+.|+..|+.. ...++|+++.+++ .+..||
T Consensus 249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~--~~GGkI~~F~s~lP~t~GpG~ 326 (766)
T 3eh2_A 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA--ECAGKLFLFHTSLPIAEAPGK 326 (766)
T ss_dssp TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT--TCCEEEEEEECSCCCSSSTTC
T ss_pred hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC--CCCcEEEEEecCCCCcCCCcc
Confidence 211 1111 1223333221 2456788999999999999753 2356788887763 222222
Q ss_pred -----------------------CH-HHHHHHHHhCCcEEEEEEecc---hHHHHHHHHHHhCCEEEEec
Q 014440 206 -----------------------DI-METIQKCKESKIRCSVIGLSA---EMFICKHLCQETGGTYSVAL 248 (424)
Q Consensus 206 -----------------------~i-~~~i~~akk~~IrV~vIgLg~---e~~iLq~iA~~TGG~Y~~~~ 248 (424)
++ .+.+..+.+.+|.||+..++. ++..|+.+++.|||.-+...
T Consensus 327 l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~ 396 (766)
T 3eh2_A 327 LKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYA 396 (766)
T ss_dssp CCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECT
T ss_pred cccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeC
Confidence 22 366888999999999999885 47999999999999877653
No 45
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.41 E-value=0.0035 Score=69.04 Aligned_cols=159 Identities=13% Similarity=0.182 Sum_probs=100.9
Q ss_pred ccceEEEEEeCCHhhhcCCCCCChHHHHHHHHHHHHHHHhcc----CCCCcEEEEEecCCceEE--------------e-
Q 014440 84 LIRYLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQ----NPLSQIGLVTVKDGVANC--------------L- 144 (424)
Q Consensus 84 iiR~lvlvLD~S~SM~~~D~~P~RL~~a~~~l~~Fi~~~~~q----nP~sqlGII~~~~g~A~~--------------l- 144 (424)
.-...++|||+|..--+. .-+..+++.++..++.+.+. .+..+||+|+|. ...++ +
T Consensus 176 ~pp~y~FvIDvs~~av~s----g~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd-~~vh~y~l~~~~~q~q~~vv~ 250 (770)
T 3efo_B 176 NPPAFIFMIDVSYSNIKN----GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYN-KVLHFFNVKSNLAQPQMMVVT 250 (770)
T ss_dssp CCCEEEEEEECSHHHHHT----THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEES-SSEEEEECCTTCSSCEEEEEC
T ss_pred CCcEEEEEEEcchhhccc----hHHHHHHHHHHHHHHhCCccccccCccceEEEEEeC-CEEEEEeCCCcccCceEEEec
Confidence 334788999999764322 24777777877777544321 123699999994 33221 1
Q ss_pred ------eCCC--------CCH---HHHHHHHhhhh--CCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCC-CCCCc
Q 014440 145 ------TDLG--------GSP---ESHIKALMGKL--GCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSAL-STCDP 204 (424)
Q Consensus 145 ------spLT--------~d~---~~~~~~L~~~~--~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~-~t~dp 204 (424)
.|+. ... ..+++.|.... ....++.++.||+.|+..|+.. ...++|+++.+++ .+..|
T Consensus 251 d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~--~~GGkI~~F~s~lP~t~Gp 328 (770)
T 3efo_B 251 DVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAA--DCPGKLFIFHSSLPTAEAP 328 (770)
T ss_dssp CTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHH--TCCEEEEEEECSCCCSSST
T ss_pred ccccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccC--CCCcEEEEEecCCCCcCCC
Confidence 1211 111 12233333221 2345788999999999999753 2345788887763 22223
Q ss_pred c------------------------CH-HHHHHHHHhCCcEEEEEEecc---hHHHHHHHHHHhCCEEEEecC
Q 014440 205 G------------------------DI-METIQKCKESKIRCSVIGLSA---EMFICKHLCQETGGTYSVALD 249 (424)
Q Consensus 205 ~------------------------~i-~~~i~~akk~~IrV~vIgLg~---e~~iLq~iA~~TGG~Y~~~~d 249 (424)
| ++ .+.+..+.+.+|.||+..++. ++..|+.+++.|||.-+...+
T Consensus 329 G~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~ 401 (770)
T 3efo_B 329 GKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNN 401 (770)
T ss_dssp TCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT
T ss_pred ccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecC
Confidence 2 12 356888999999999999886 478999999999998776543
No 46
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=92.27 E-value=0.085 Score=42.68 Aligned_cols=87 Identities=25% Similarity=0.492 Sum_probs=58.7
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCCCcee
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISRSTCF 366 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~~~C~ 366 (424)
.|.|+.|...|- +-|-.|+.|+..+.+...|.+-. ||.-. ......|.
T Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~----------------~~~~~~C~ 70 (124)
T 2dlq_A 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR----------------SEQVFTCS 70 (124)
T ss_dssp SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCS----------------CCCCEECS
T ss_pred CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCC----------------CCCCeECC
Confidence 789999988664 35678999999999888887652 22110 01234688
Q ss_pred ecccccccCCC--------CCCceeeCCCcCcccccccchhhhcc-CC
Q 014440 367 GCQQSLLASGN--------KAGLCVACPKCKKHFCLECDIYIHES-LH 405 (424)
Q Consensus 367 ~C~~~~~~~~~--------~~~~~~~C~~C~~~fC~dCd~fihe~-lh 405 (424)
.|.+.|..... .....|.|+.|+..|=..=++-.|.. .|
T Consensus 71 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H 118 (124)
T 2dlq_A 71 VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118 (124)
T ss_dssp SSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence 89888864320 11235999999999887777777753 44
No 47
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=91.25 E-value=0.032 Score=49.36 Aligned_cols=90 Identities=26% Similarity=0.577 Sum_probs=52.8
Q ss_pred eEEcCCCCccccC--------------CCCCCCCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCCCcee
Q 014440 303 GYTCPRCKARVCE--------------LPTECRICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISRSTCF 366 (424)
Q Consensus 303 Gy~Cp~C~s~~C~--------------lP~~C~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~~~C~ 366 (424)
.|.|+.|+..|-. -|-.|+.|+..+.+...|.+-. |+- .....|.
T Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------------~~~~~C~ 109 (190)
T 2i13_A 49 PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG-------------------EKPYACP 109 (190)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHT-------------------CCCEECT
T ss_pred CccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCC-------------------CCCCcCC
Confidence 5778888766542 4557888888877777775532 210 0123577
Q ss_pred ecccccccCCC--------CCCceeeCCCcCcccccccchhhhccC------CCCCCCC
Q 014440 367 GCQQSLLASGN--------KAGLCVACPKCKKHFCLECDIYIHESL------HNCPGCE 411 (424)
Q Consensus 367 ~C~~~~~~~~~--------~~~~~~~C~~C~~~fC~dCd~fihe~l------h~CPgC~ 411 (424)
.|.+.|..... .....|.|+.|+..|=..=++..|... ..|+.|.
T Consensus 110 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~ 168 (190)
T 2i13_A 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168 (190)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCC
Confidence 77766653210 012247777777777666666665443 3577775
No 48
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=90.72 E-value=0.15 Score=43.47 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=27.4
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|+..|- +-|-.|+.|+..+.+..+|.+-
T Consensus 22 ~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H 69 (133)
T 2lt7_A 22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH 69 (133)
T ss_dssp EEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHH
T ss_pred CeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhh
Confidence 599999998776 3466899999999988888654
No 49
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=90.13 E-value=0.23 Score=38.37 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=48.8
Q ss_pred CCCCCCCCCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCceeecccccccCC--------CCCCceeeCC
Q 014440 316 LPTECRICGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG--------NKAGLCVACP 386 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~--------~~~~~~~~C~ 386 (424)
-|-.|+.|+..+.+...|.+-.. |. .. ....|..|.+.|.... -.....|.|+
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~-~~-----------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 68 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHT-GV-----------------KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCC-CC-----------------CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECS
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcC-CC-----------------CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCC
Confidence 35567788888888877765432 11 00 1335888887775431 0112359999
Q ss_pred CcCcccccccchhhhccCCC
Q 014440 387 KCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 387 ~C~~~fC~dCd~fihe~lh~ 406 (424)
.|+..|=..=++..|...|.
T Consensus 69 ~C~~~f~~~~~l~~H~~~h~ 88 (96)
T 2dmd_A 69 ICPYASRNSSQLTVHLRSHT 88 (96)
T ss_dssp SSSCEESSHHHHHHHHTTCC
T ss_pred CCCCccCCHHHHHHHHHHhc
Confidence 99999998888888988774
No 50
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=90.08 E-value=0.25 Score=34.84 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=34.9
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~ 412 (424)
...|.-|...+.... .....+.|++.||.+|-.-.-+.-..||-|..
T Consensus 5 ~~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 51 (55)
T 1iym_A 5 GVECAVCLAELEDGE----EARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51 (55)
T ss_dssp SCCCTTTCCCCCTTS----CCEECSSSCCEECTTHHHHTTTTCCSCSSSCC
T ss_pred CCcCccCCccccCCC----ceEECCCCCCcccHHHHHHHHHcCCcCcCCCC
Confidence 457999997775421 23567789999999997655566789999964
No 51
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=89.84 E-value=0.34 Score=38.37 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=31.3
Q ss_pred ccccCCCCCceeecccccccCCCCCCceeeCCCcCcccccccchh
Q 014440 355 NDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399 (424)
Q Consensus 355 ~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f 399 (424)
.|........|..|.+.|.-- .-++-|-.|+.+||.+|-.+
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTT----VRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTT----SCCEECTTTCCEECTGGGCC
T ss_pred ccccCCCCCCCcCcCCccccc----hhcccccCCCcEEChHHhCC
Confidence 354444567899999999632 23688999999999999754
No 52
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.79 E-value=0.19 Score=39.65 Aligned_cols=40 Identities=23% Similarity=0.482 Sum_probs=29.4
Q ss_pred cccCCCCCceeecccccccCCCCCCceeeCCCcCcccccccchh
Q 014440 356 DLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399 (424)
Q Consensus 356 ~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f 399 (424)
|........|..|.++|.-. .-++-|-.|+.+||.+|-.+
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSIS----RRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTT----BCCEECTTTCCEECSGGGCE
T ss_pred cccCccCCcccCcCCcccCc----cccccCCCCCCEEChHHhCC
Confidence 33334556899999999632 23588999999999999764
No 53
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.70 E-value=0.25 Score=39.15 Aligned_cols=40 Identities=20% Similarity=0.563 Sum_probs=30.0
Q ss_pred cccCCCCCceeecccccccCCCCCCceeeCCCcCcccccccchh
Q 014440 356 DLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399 (424)
Q Consensus 356 ~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f 399 (424)
|.+......|..|.++|.-- .-+.-|-.|+.+||..|-.+
T Consensus 8 W~pd~~~~~C~~C~~~F~~~----~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 8 RYPTNNFGNCTGCSATFSVL----KKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCSCCCCSSCSSSCCCCCSS----SCCEECSSSCCEECTTTSCE
T ss_pred cccCCCCCcCcCcCCccccc----hhhhhhcCCCcEEChhhcCC
Confidence 44444566899999999532 23688999999999999653
No 54
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.97 E-value=0.15 Score=41.11 Aligned_cols=78 Identities=19% Similarity=0.415 Sum_probs=55.1
Q ss_pred CCCCCCCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCCCceeecccccccCC-----------CCCCce
Q 014440 316 LPTECRICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG-----------NKAGLC 382 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~-----------~~~~~~ 382 (424)
-|-.|+.|+..+.+...|.+-. |+- . ....|.-|.+.|.... ......
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--~-----------------~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~ 66 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLKVHNRKHTG--E-----------------KPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHHHHHHHHSS--C-----------------CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHhCCC--C-----------------CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC
Confidence 4678999999999998887642 321 1 1236888988875431 122346
Q ss_pred eeCCCcCcccccccchhhhccC------CCCCCCCC
Q 014440 383 VACPKCKKHFCLECDIYIHESL------HNCPGCES 412 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fihe~l------h~CPgC~~ 412 (424)
|.|+.|+..|=..=++..|... ..|+.|..
T Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 102 (124)
T 2dlq_A 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102 (124)
T ss_dssp EECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCC
T ss_pred eECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccc
Confidence 9999999999888887777554 46999864
No 55
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=88.89 E-value=0.22 Score=40.05 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=27.9
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchh
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f 399 (424)
....|..|.++|.-- .-++.|-.|+.+||..|-.+
T Consensus 19 ~~~~C~~C~~~F~~~----~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFT----KRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSS----SCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccch----hhCccccCCCCEECCcccCC
Confidence 456899999998532 23589999999999999864
No 56
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=88.70 E-value=0.22 Score=42.55 Aligned_cols=35 Identities=23% Similarity=0.638 Sum_probs=28.1
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchh
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f 399 (424)
....|..|..+|.-. .-++-|-.|+.+||..|-.+
T Consensus 68 ~~~~C~~C~~~Fs~~----~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVT----VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSS----SCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccc----cccccCCCCCeEEChHHhCC
Confidence 456899999999632 23688999999999999765
No 57
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=88.10 E-value=0.14 Score=45.08 Aligned_cols=84 Identities=27% Similarity=0.553 Sum_probs=60.7
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCCCcee
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISRSTCF 366 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~~~C~ 366 (424)
.|.|+.|...|- +-|-.|+.|+..+.+...|.+-. |+- .....|.
T Consensus 77 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------------~~~~~C~ 137 (190)
T 2i13_A 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-------------------EKPYKCP 137 (190)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHC-------------------CCCEECT
T ss_pred CccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCC-------------------CCCeECC
Confidence 699999988764 35678999999999988887642 221 0234699
Q ss_pred ecccccccCCC--------CCCceeeCCCcCcccccccchhhhccCC
Q 014440 367 GCQQSLLASGN--------KAGLCVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 367 ~C~~~~~~~~~--------~~~~~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.+.|..... .....|.|+.|+..|=..=++-.|...|
T Consensus 138 ~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H 184 (190)
T 2i13_A 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184 (190)
T ss_dssp TTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC
T ss_pred CCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhc
Confidence 99988865320 0123699999999998777777777666
No 58
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=87.98 E-value=0.24 Score=35.18 Aligned_cols=24 Identities=33% Similarity=0.884 Sum_probs=20.9
Q ss_pred eEEcCCCCcccc----------CCCC--CCCCCCce
Q 014440 303 GYTCPRCKARVC----------ELPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C----------~lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|= ++|- .||+||..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 599999999986 6888 89999964
No 59
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=87.87 E-value=0.19 Score=39.71 Aligned_cols=43 Identities=26% Similarity=0.576 Sum_probs=28.9
Q ss_pred ceeecccccccCC--------CCCCceeeCCCcCcccccccchhhhccCCC
Q 014440 364 TCFGCQQSLLASG--------NKAGLCVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 364 ~C~~C~~~~~~~~--------~~~~~~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|..|.+.|.... -.....|.|+.|+..|-..-++..|...|.
T Consensus 47 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~ 97 (106)
T 2ee8_A 47 TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97 (106)
T ss_dssp BCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTT
T ss_pred CCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhC
Confidence 5666766664321 011224889999999988888888887774
No 60
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.78 E-value=0.38 Score=36.13 Aligned_cols=50 Identities=20% Similarity=0.505 Sum_probs=35.6
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSNP 418 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~~~~ 418 (424)
...|.-|...+.++ ..-..|++.||.+|=.-.-+.-..||-|........
T Consensus 15 ~~~C~IC~~~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSICKGYLIDA-------TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGSCTTTSSCCSSC-------EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCChHHHCc-------CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 45799998777532 345689999999997544455679999987554333
No 61
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=87.44 E-value=0.81 Score=34.66 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=34.7
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
....|.-|...|..+. .... -.|++.||.+|-.-.-+.-..||-|.....
T Consensus 14 ~~~~C~IC~~~~~~~~----~~~~-~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDYALGE----SVRQ-LPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCCCTTS----CEEE-CTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCeeCCccccCCC----CEEE-eCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 4568999997775331 1122 249999999998655555689999976443
No 62
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=87.12 E-value=0.17 Score=40.97 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=34.8
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccC-CCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESL-HNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~l-h~CPgC~~~~~ 415 (424)
...|.-|+..|.. ...|..|++.||.+|=.-.-..- ..||-|-....
T Consensus 22 ~~~C~IC~~~~~~-------p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRD-------ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSS-------EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccC-------ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3479999977753 35689999999999975444444 69999976543
No 63
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.01 E-value=0.45 Score=36.30 Aligned_cols=48 Identities=31% Similarity=0.552 Sum_probs=33.4
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc------CCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES------LHNCPGCESLRQS 416 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~------lh~CPgC~~~~~~ 416 (424)
....|.-|...+..+ ... .|++.||.+|-.-.-+. -..||.|......
T Consensus 18 ~~~~C~IC~~~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEP-------VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSC-------EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcc-------eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345899998777532 234 49999999997543333 6789999865443
No 64
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.49 E-value=0.55 Score=35.48 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=35.8
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
....|.-|+..|..+. .+..-.|++.||.+|-.-.-..-..||-|.....
T Consensus 22 ~~~~C~IC~~~~~~~~-----~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-----LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTC-----EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCC-----eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4568999998775431 2344459999999997655556679999976443
No 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=86.35 E-value=0.098 Score=43.57 Aligned_cols=89 Identities=18% Similarity=0.460 Sum_probs=54.5
Q ss_pred EcCCCCccccCCCCCCCCCCceecCchhHHhhhcccCCCCCCcccCccccccccCCCCCceeecccccccCCCCCCceee
Q 014440 305 TCPRCKARVCELPTECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVA 384 (424)
Q Consensus 305 ~Cp~C~s~~C~lP~~C~~C~l~Lvs~phLarsyhhl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~ 384 (424)
+|-.|....-+-...||+|+..+-.. .++.++ .. .....|..|...|..+... .....
T Consensus 36 fc~~Ci~~~~~~~~~CP~Cr~~~~~~-----~l~~l~-----i~-----------~~~~~C~iC~~~~~~~~~~-~~~~~ 93 (133)
T 4ap4_A 36 FCSQCLRDSLKNANTCPTCRKKINHK-----RYHPIY-----IG-----------SGTVSCPICMDGYSEIVQN-GRLIV 93 (133)
T ss_dssp EEHHHHHHHHTTCSBCTTTCCBCTTT-----CEEECB-----CS-----------SSSCBCTTTCCBHHHHHHT-TCCEE
T ss_pred hhHHHHHHHHHhCCCCCCCCCcCccc-----cccccc-----cC-----------CCCCCCCCCCCcccccccc-CcceE
Confidence 44444444445667899999876321 122221 11 1245799999877542100 01235
Q ss_pred CCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 385 CPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 385 C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
...|++.||.+|-.--.+.-..||-|.....
T Consensus 94 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 94 STECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp EETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred eCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 6789999999997666667789999976443
No 66
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=86.19 E-value=0.3 Score=43.90 Aligned_cols=24 Identities=38% Similarity=0.920 Sum_probs=20.7
Q ss_pred eEEcCCCCcccc-CCCCCCCCCCce
Q 014440 303 GYTCPRCKARVC-ELPTECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C-~lP~~C~~C~l~ 326 (424)
.|+|++|+-++= +.|..||+||..
T Consensus 138 ~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEESCCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 899999999875 578899999953
No 67
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.86 E-value=0.64 Score=34.88 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=34.0
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
....|.-|+..|..+. ..... .|++.||.+|-.-.-+.-..||-|....
T Consensus 14 ~~~~C~IC~~~~~~~~----~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRD----ELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBCCSSS----CEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCcCCCcccCCCC----cEEEc-CCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 3568999998875431 12233 4999999999765545556999997643
No 68
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=85.82 E-value=0.8 Score=34.60 Aligned_cols=54 Identities=22% Similarity=0.527 Sum_probs=35.5
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc--CCCCCCCCCC-CCCCCcccC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES--LHNCPGCESL-RQSNPVVAN 422 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~--lh~CPgC~~~-~~~~~~~~~ 422 (424)
...|.-|...|..+ ..-+.|++.||..|=.-.-+. ...||-|... ...+....|
T Consensus 15 ~~~C~IC~~~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 15 ELLCLICKDIMTDA-------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp GGSCSSSCCCCTTC-------EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred CCCCcCCChHHhCC-------eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 45799998777532 445669999999996433322 3689999864 333444443
No 69
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=85.48 E-value=0.69 Score=32.42 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=34.6
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
...|.-|...+.... .......|++.||.+|-.-.-..-..||-|....
T Consensus 5 ~~~C~IC~~~~~~~~----~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 5 SSGCPICLEDIHTSR----VVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCSCTTTCCCCCTTT----SCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCcCcccChhhcCCC----cCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 457999997775321 1345667999999999755444448999996543
No 70
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=85.34 E-value=0.73 Score=36.09 Aligned_cols=46 Identities=26% Similarity=0.675 Sum_probs=32.7
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccch-hh-hccCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI-YI-HESLHNCPGCESL 413 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~-fi-he~lh~CPgC~~~ 413 (424)
....|.-|...|..+ ..-+.|++.||..|=. ++ ...-..||-|...
T Consensus 12 ~~~~C~IC~~~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDIMTDA-------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEECSSC-------EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCS
T ss_pred cCCCCCCCChhhcCc-------eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCc
Confidence 456899999777532 3456699999999953 33 2234699999765
No 71
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.34 E-value=0.83 Score=34.73 Aligned_cols=47 Identities=28% Similarity=0.562 Sum_probs=33.1
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc------CCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES------LHNCPGCESLRQ 415 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~------lh~CPgC~~~~~ 415 (424)
....|.-|...+..+ ..- .|++.||.+|-.-.-+. -..||.|.....
T Consensus 18 ~~~~C~IC~~~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQP-------LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSC-------BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCc-------eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 356899999777532 222 69999999997543333 679999976444
No 72
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=84.27 E-value=0.34 Score=38.74 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=34.3
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
...|.-|...|.. ....+.|++.||..|=.-.-+.-..||.|.....
T Consensus 22 ~~~C~IC~~~~~~-------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNI-------AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSS-------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCC-------cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 3479999877753 2445789999999997544445579999976443
No 73
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=84.26 E-value=0.56 Score=37.16 Aligned_cols=39 Identities=26% Similarity=0.709 Sum_probs=29.8
Q ss_pred ceeecccccccCCCCCCceeeCCCcCcccccccchhh---hccC
Q 014440 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYI---HESL 404 (424)
Q Consensus 364 ~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fi---he~l 404 (424)
.|..|...+..... .....||.|+..||..|-.-- |+-+
T Consensus 27 wCP~C~~~~~~~~~--~~~v~C~~C~~~FC~~C~~~w~~~H~~~ 68 (86)
T 2ct7_A 27 WCAQCSFGFIYERE--QLEATCPQCHQTFCVRCKRQWEEQHRGR 68 (86)
T ss_dssp CCSSSCCCEECCCS--CSCEECTTTCCEECSSSCSBCCTTTTTS
T ss_pred ECcCCCchheecCC--CCceEeCCCCCccccccCCchhhcCCCC
Confidence 59999877654322 234789999999999999877 8754
No 74
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=84.24 E-value=0.89 Score=36.34 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=29.1
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
....|+.|.+.+.- ...|.| +|+..||.. --|-.-|+|++
T Consensus 24 ~~~rC~~C~kkvgl-----~~~f~C-rCg~~FC~~---HRy~e~H~C~f 63 (85)
T 1wff_A 24 IMKHCFLCGKKTGL-----ATSFEC-RCGNNFCAS---HRYAEAHGCNY 63 (85)
T ss_dssp CCCBCSSSCCBCSS-----SSCEEC-TTCCEECTT---TCSTGGGTCCS
T ss_pred cCccchhhCCeecc-----cCCeEc-CCCCEeccc---CCCccCCCCcc
Confidence 45689999977641 125999 599999975 23447899988
No 75
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.97 E-value=0.51 Score=36.23 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=27.7
Q ss_pred ceeecccccccCC----------CCCCceeeCCCcCcccccccchhhhc-cCCC
Q 014440 364 TCFGCQQSLLASG----------NKAGLCVACPKCKKHFCLECDIYIHE-SLHN 406 (424)
Q Consensus 364 ~C~~C~~~~~~~~----------~~~~~~~~C~~C~~~fC~dCd~fihe-~lh~ 406 (424)
.|.-|.+.|.... ......|.|+.|+..|=..=.+-.|- ..|.
T Consensus 37 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~ 90 (95)
T 2yt9_A 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90 (95)
T ss_dssp ECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred cCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcC
Confidence 5777776665321 11113589999999988777777775 4553
No 76
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=83.57 E-value=0.18 Score=42.99 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=32.0
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~ 411 (424)
...|.+|..+|.-. .-+..|-.|+++||..|-.+--.....|-.|-
T Consensus 19 ~~~C~~C~~~Fs~~----~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 19 EPSCKSCGAHFANT----ARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp -CCCTTTCCCCSSG----GGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cCcccCcCCccccc----cccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34799999998532 23588999999999999876544566676663
No 77
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=83.56 E-value=0.12 Score=38.51 Aligned_cols=69 Identities=20% Similarity=0.422 Sum_probs=42.4
Q ss_pred CCCCCCCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCceeecccccccCCC--------CCCceeeCCCc
Q 014440 318 TECRICGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN--------KAGLCVACPKC 388 (424)
Q Consensus 318 ~~C~~C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~--------~~~~~~~C~~C 388 (424)
-.|+.|+..+.+...|.+-.- |. .. ....|..|.+.|..... .....|.|+.|
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~-~~-----------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C 63 (82)
T 2kmk_A 2 FDCKICGKSFKRSSTLSTHLLIHS-DT-----------------RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63 (82)
T ss_dssp EECSSSCCEESSHHHHHHHHHHHH-TC-----------------CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTT
T ss_pred ccCCCCcccccCchhHHHHHHHcC-CC-----------------CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCc
Confidence 357788888888887765321 11 00 13358888877754310 01235999999
Q ss_pred CcccccccchhhhccC
Q 014440 389 KKHFCLECDIYIHESL 404 (424)
Q Consensus 389 ~~~fC~dCd~fihe~l 404 (424)
+..|=..=++..|...
T Consensus 64 ~~~f~~~~~l~~H~~~ 79 (82)
T 2kmk_A 64 GKAFSQSSNLITHSRK 79 (82)
T ss_dssp SCEESSHHHHHHHHHH
T ss_pred chhhCChHHHHHHHHh
Confidence 9988766666666543
No 78
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=83.41 E-value=0.4 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=21.2
Q ss_pred eEEcCCCCcccc--CCCCCCCCCCce
Q 014440 303 GYTCPRCKARVC--ELPTECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C--~lP~~C~~C~l~ 326 (424)
-|+|++|+-++= ++|..||+||..
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 699999999984 689999999974
No 79
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=82.68 E-value=0.6 Score=34.27 Aligned_cols=24 Identities=29% Similarity=0.701 Sum_probs=20.8
Q ss_pred eEEcCCCCccccC-----------------CCC--CCCCCCce
Q 014440 303 GYTCPRCKARVCE-----------------LPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C~-----------------lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|=. ||. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5999999999875 888 89999963
No 80
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=82.46 E-value=0.23 Score=40.97 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=35.8
Q ss_pred ceeecccccccCCCCCCceeeCCCcCcccccccchhhh-ccCCCCCCCCCCCCCCC
Q 014440 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIH-ESLHNCPGCESLRQSNP 418 (424)
Q Consensus 364 ~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fih-e~lh~CPgC~~~~~~~~ 418 (424)
.|--|..++. ...+---|++.||.||-...- +.-..||+|.......+
T Consensus 3 fC~~C~~Pi~-------iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK-------VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS-------EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE-------EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 5778887775 245778899999999987653 66789999976554433
No 81
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=82.44 E-value=0.73 Score=35.41 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=26.1
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccch
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI 398 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~ 398 (424)
..|..|.++|.-- .-++-|-.|+.+||..|-.
T Consensus 12 ~~C~~C~~~F~~~----~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLL----NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTT----BCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCc----cccccCCCCCEEEcccccC
Confidence 4799999999632 2368899999999999974
No 82
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.44 E-value=2.3 Score=30.34 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=30.0
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
...|.-|...|..+. --.|++.||..|=.- .-..||-|....
T Consensus 6 ~~~C~IC~~~~~~p~--------~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~ 47 (56)
T 1bor_A 6 FLRCQQCQAEAKCPK--------LLPCLHTLCSGCLEA---SGMQCPICQAPW 47 (56)
T ss_dssp CSSCSSSCSSCBCCS--------CSTTSCCSBTTTCSS---SSSSCSSCCSSS
T ss_pred CCCceEeCCccCCeE--------EcCCCCcccHHHHcc---CCCCCCcCCcEe
Confidence 457999997776431 225999999999433 567899997643
No 83
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=82.03 E-value=0.62 Score=36.95 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=21.0
Q ss_pred eEEcCCCCccccC-----------------CCC--CCCCCCce
Q 014440 303 GYTCPRCKARVCE-----------------LPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C~-----------------lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|=. ||. .||+||..
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 7999999999974 887 89999963
No 84
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=81.68 E-value=1.1 Score=33.06 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
....|.-|...|.... ....-.|++.||.+|-.-.-..-..||-|....
T Consensus 13 ~~~~C~IC~~~~~~~~-----~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE-----DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CCCSBTTTTBCCCSSS-----CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCeeCCccccCCC-----cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 4568999987774321 233446999999999764444456799997643
No 85
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=81.31 E-value=1 Score=36.03 Aligned_cols=47 Identities=23% Similarity=0.650 Sum_probs=34.7
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhh-------hccCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYI-------HESLHNCPGCE 411 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fi-------he~lh~CPgC~ 411 (424)
....|..|.++|.-- .-+.-|-.|+.+||..|-.+- .+....|-.|.
T Consensus 8 ~~~~C~~C~~~F~~~----~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~ 61 (88)
T 1wfk_A 8 MESRCYGCAVKFTLF----KKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCH 61 (88)
T ss_dssp CCSBCTTTCCBCCSS----SCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHH
T ss_pred cCCCCcCcCCcccCc----cccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHH
Confidence 345899999998632 236899999999999997641 34566677773
No 86
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=81.26 E-value=1.2 Score=33.60 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=32.8
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc-------CCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES-------LHNCPGCESLRQS 416 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~-------lh~CPgC~~~~~~ 416 (424)
....|.-|...|..+ ... .|++.||.+|=.-.-+. -..||-|......
T Consensus 11 ~~~~C~IC~~~~~~p-------~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEP-------LSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSC-------CCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCe-------eEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356899999777543 122 59999999996532222 6789999765443
No 87
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=81.07 E-value=1.1 Score=32.77 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=32.9
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
...|.-|...+..+ ..-..|++.||.+|-.-.-+.-..||-|....
T Consensus 5 ~~~C~IC~~~~~~~-------~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 5 AERCPICLEDPSNY-------SMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCCSC-------EEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCeeCCccccCC-------cEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 45799998776431 23456999999999754445558999997543
No 88
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.57 E-value=1 Score=35.90 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCCCCCCceecCchhHHhhhcccCCCCCCcccCccccccccCCCCCceeeccccc--ccCCC--------CCCceeeCCC
Q 014440 318 TECRICGLQLVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSL--LASGN--------KAGLCVACPK 387 (424)
Q Consensus 318 ~~C~~C~l~Lvs~phLarsyhhl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~--~~~~~--------~~~~~~~C~~ 387 (424)
-.|+.|+..+.+...|.+-... -..+.+. ....|..|.+.| ..... .....|.|+.
T Consensus 20 ~~C~~C~k~f~~~~~L~~H~~~---~~h~~~~-----------~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~ 85 (115)
T 2dmi_A 20 FRCKDCSAAYDTLVELTVHMNE---TGHYRDD-----------NHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY 85 (115)
T ss_dssp EEBSSSSCEESSHHHHHHHHHH---TCCCBCS-----------CCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSS
T ss_pred EECCccCchhcCHHHHHHHHHH---hCccccC-----------CCccCCCCCcccccccHHHHHHHhhccCCCcceECCC
Confidence 3566678888888877654321 0001110 112377887777 43221 1123599999
Q ss_pred cCcccccccchhhhccCC
Q 014440 388 CKKHFCLECDIYIHESLH 405 (424)
Q Consensus 388 C~~~fC~dCd~fihe~lh 405 (424)
|+..|=..=++-.|...|
T Consensus 86 C~k~f~~~~~L~~H~~~h 103 (115)
T 2dmi_A 86 CGHSFESLQDLSVHMIKT 103 (115)
T ss_dssp SCCBCSSHHHHHHHHHHT
T ss_pred CCCccCCHHHHHHHHHHh
Confidence 999998888877776543
No 89
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=80.02 E-value=1.1 Score=33.88 Aligned_cols=39 Identities=26% Similarity=0.673 Sum_probs=28.1
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
....|..|.+.+.- ..|.| .|+..||..=- |-.-|+|++
T Consensus 14 ~~~rC~~C~kkvgl------~~f~C-rCg~~FC~~HR---~~e~H~C~f 52 (64)
T 1wg2_A 14 PNNRCFSCNKKVGV------MGFKC-KCGSTFCGSHR---YPEKHECSF 52 (64)
T ss_dssp CSCSCTTTCCCCTT------SCEEC-TTSCEECSSSC---SSTTTTCCC
T ss_pred cCCcChhhCCcccc------cCeEe-ecCCEecccCC---CccccCCCc
Confidence 45689999976531 15999 99999997632 345788875
No 90
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=80.02 E-value=0.81 Score=33.17 Aligned_cols=24 Identities=29% Similarity=0.735 Sum_probs=20.0
Q ss_pred eEEcCCCCcccc-----------------CCCC--CCCCCCce
Q 014440 303 GYTCPRCKARVC-----------------ELPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C-----------------~lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|= +||. .||+||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 489999999986 5887 89999963
No 91
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.88 E-value=0.83 Score=34.13 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=32.1
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
....|.-|...+..+ ..- .|++.||.+|-.-.-..-..||-|....
T Consensus 14 ~~~~C~IC~~~~~~~-------~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTCVHP-------VSL-PCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBCSSE-------EEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCccCCcccCCC-------EEc-cCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 356899998776432 223 4999999999754334447999997643
No 92
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=79.56 E-value=0.43 Score=38.14 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=21.6
Q ss_pred ceeecccccccCCC--------CCCceeeC--CCcCcccccccchhhhccC
Q 014440 364 TCFGCQQSLLASGN--------KAGLCVAC--PKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 364 ~C~~C~~~~~~~~~--------~~~~~~~C--~~C~~~fC~dCd~fihe~l 404 (424)
.|..|.+.|..... .....|.| +.|+..|=..-++-.|..+
T Consensus 68 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~ 118 (119)
T 2jp9_A 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118 (119)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred cCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence 46666666653210 01124777 6677776655555555443
No 93
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=79.40 E-value=1.1 Score=35.41 Aligned_cols=48 Identities=19% Similarity=0.467 Sum_probs=33.9
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~ 413 (424)
....|.-|...|.... ....-+ |++.||.+|-.-.-..-..||-|-..
T Consensus 39 ~~~~C~IC~~~~~~~~----~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGD----VATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTC----EEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCCCcccChhhcCCC----cEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 4568999997775321 123344 99999999976555566799999754
No 94
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=79.35 E-value=0.71 Score=34.14 Aligned_cols=56 Identities=18% Similarity=0.433 Sum_probs=37.9
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~~~ 417 (424)
....|.-|...+..+... .....-..|++.||.+|=.-.-+.-..||.|.......
T Consensus 9 ~~~~C~IC~~~~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQN-GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTT-TCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccc-cCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 456899999877643100 11245678999999999755445557999997654433
No 95
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=78.98 E-value=0.57 Score=39.97 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=31.7
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
..|.-|...|..+ ... .|++.||.+|=.-.-+.-..||.|-...
T Consensus 54 ~~C~iC~~~~~~~-------~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIEA-------VTL-NCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSSE-------EEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccCCc-------eEC-CCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 3699999777532 222 5999999999655455668899996543
No 96
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=78.29 E-value=1 Score=32.98 Aligned_cols=24 Identities=33% Similarity=0.886 Sum_probs=19.8
Q ss_pred eEEcCCCCcccc-----------------CCCC--CCCCCCce
Q 014440 303 GYTCPRCKARVC-----------------ELPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C-----------------~lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|= +||- .||+||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 599999998876 5776 89999964
No 97
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=78.24 E-value=1.2 Score=33.67 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=33.0
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc-CCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES-LHNCPGCESLRQS 416 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~-lh~CPgC~~~~~~ 416 (424)
..-.|.-|...|.++ ..- .|++.||..|=.-.-+. -..||-|......
T Consensus 7 ~~~~C~IC~~~~~~P-------v~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDP-------VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSE-------EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCC-------EEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 355899999777532 222 59999999996433333 6789999765443
No 98
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=78.17 E-value=1.3 Score=32.06 Aligned_cols=24 Identities=33% Similarity=0.865 Sum_probs=19.6
Q ss_pred eEEcCCCCcccc-----------------CCCC--CCCCCCce
Q 014440 303 GYTCPRCKARVC-----------------ELPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C-----------------~lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|= +||. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 599999999886 3777 79999863
No 99
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=77.23 E-value=1.1 Score=34.42 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEcCCCCccccC-----------------CCC--CCCCCCce
Q 014440 303 GYTCPRCKARVCE-----------------LPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C~-----------------lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|=. ||. .||+||..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 6999999999873 887 89999974
No 100
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.76 E-value=1.2 Score=41.60 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=26.8
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccchh
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f 399 (424)
..|..|.++|.-- .-++-|-.|+..||..|..+
T Consensus 165 ~~C~~C~~~F~~~----~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVM----TRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTT----BCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCcc----ccccccCCCcCEeChhhcCC
Confidence 4799999999632 23689999999999999864
No 101
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=76.72 E-value=1.1 Score=41.18 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.8
Q ss_pred eEEcCCCCccccC-CCCCCCCCCce
Q 014440 303 GYTCPRCKARVCE-LPTECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C~-lP~~C~~C~l~ 326 (424)
-|+|++|+-++=- .|-.||+||..
T Consensus 171 ~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEESSCCSBCTTTCCB
T ss_pred EEEECCCCCEEcCcCCCCCCCCCCC
Confidence 7999999999764 45599999964
No 102
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=76.47 E-value=0.88 Score=36.90 Aligned_cols=47 Identities=21% Similarity=0.539 Sum_probs=34.1
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
...|.-|...|.. ......|++.||..|=.-.-+.-..||-|.....
T Consensus 15 ~~~C~IC~~~~~~-------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYFID-------ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBCSS-------EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCCccCChHHhC-------cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4579999877753 2456689999999996544444489999976443
No 103
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.33 E-value=1.9 Score=34.68 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc---CCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES---LHNCPGCESLRQS 416 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~---lh~CPgC~~~~~~ 416 (424)
...|.-|...+..+ .. ..|++.||.+|=.-.-+. -..||.|......
T Consensus 21 ~~~C~IC~~~~~~p-------~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP-------VS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC-------CB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe-------EE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34799998777532 11 369999999996433332 2489999764443
No 104
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=76.32 E-value=1.1 Score=35.91 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=20.5
Q ss_pred eEEcCCCCcccc-----------------CCCC--CCCCCCce
Q 014440 303 GYTCPRCKARVC-----------------ELPT--ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C-----------------~lP~--~C~~C~l~ 326 (424)
-|+|++|+-+|= +||. .||+||..
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 799999998886 6777 89999963
No 105
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.18 E-value=1.3 Score=41.00 Aligned_cols=33 Identities=21% Similarity=0.607 Sum_probs=26.8
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccchh
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY 399 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f 399 (424)
..|..|.++|.-- .-++-|-.|+..||..|-.+
T Consensus 162 ~~C~~C~~~F~~~----~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFT----NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSS----SCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCc----ccccccCCcCCEEChHHhCC
Confidence 5899999999522 23688999999999999754
No 106
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=75.67 E-value=2 Score=33.36 Aligned_cols=39 Identities=21% Similarity=0.565 Sum_probs=28.4
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
....|+.|.+.+.- ..|.| .|+..||.. --|-.-|+|++
T Consensus 24 ~~~RC~~C~kkvgL------~~f~C-rCg~~FCs~---HRy~e~H~C~f 62 (74)
T 1wfp_A 24 TATRCLSCNKKVGV------TGFKC-RCGSTFCGT---HRYPESHECQF 62 (74)
T ss_dssp CCCBCSSSCCBCTT------TCEEC-TTSCEECTT---TCSTTTSCCCS
T ss_pred cCccchhhcCcccc------cceEe-ccCCEeccc---cCCCcCCCCcC
Confidence 45689999877642 25999 899999975 33445788875
No 107
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.31 E-value=1.4 Score=32.05 Aligned_cols=52 Identities=19% Similarity=0.473 Sum_probs=36.1
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~ 413 (424)
....|.-|...+..+... ...+.-..|++.||.+|-.-.-+.-..||-|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQN-GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTT-TCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCC
T ss_pred CCCCCcccCccccccccc-cCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCc
Confidence 456899999877643211 1123556899999999986555556799999654
No 108
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.30 E-value=2.7 Score=34.52 Aligned_cols=45 Identities=24% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
...|.-|...|..+ ..-..|++.||..|=.-.-+ ..||-|.....
T Consensus 22 ~~~C~IC~~~~~~p-------v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP-------VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC-------BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc-------cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 45799998777543 22337999999999643333 68999976443
No 109
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=75.13 E-value=1.3 Score=35.00 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=25.2
Q ss_pred ceeecccccccCC--------CCCCceeeCCCcCcccccccchhhhccC
Q 014440 364 TCFGCQQSLLASG--------NKAGLCVACPKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 364 ~C~~C~~~~~~~~--------~~~~~~~~C~~C~~~fC~dCd~fihe~l 404 (424)
.|.-|.+.|.... -.....|.|+.|+..|=..-++..|-..
T Consensus 39 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 87 (110)
T 2csh_A 39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87 (110)
T ss_dssp ECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence 4666666664331 0112358899999988777777766543
No 110
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.92 E-value=2.4 Score=29.76 Aligned_cols=42 Identities=29% Similarity=0.626 Sum_probs=29.5
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhh-h--ccCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYI-H--ESLHNCPGC 410 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fi-h--e~lh~CPgC 410 (424)
....|.-|...+..+ .. ..|++.||.+|=.-. . +.-..||-|
T Consensus 14 ~~~~C~IC~~~~~~p-------~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP-------VI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC-------CC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc-------Ee-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 356899999777543 11 369999999996543 2 355689987
No 111
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.88 E-value=1.4 Score=33.68 Aligned_cols=47 Identities=26% Similarity=0.597 Sum_probs=34.3
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
....|.-|...+..+ .. ..|++.||..|=.-.-+.-..||-|.....
T Consensus 14 ~~~~C~IC~~~~~~p-------~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP-------VV-TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE-------EE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe-------eE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 355899998777532 23 479999999997555556778999976543
No 112
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=74.79 E-value=1.6 Score=36.73 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=14.1
Q ss_pred eeeCCC--cCcccccccchhhhccCC
Q 014440 382 CVACPK--CKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~--C~~~fC~dCd~fihe~lh 405 (424)
.|.|+. |+..|-..-++..|...|
T Consensus 120 ~~~C~~~~C~k~f~~~~~L~~H~~~H 145 (155)
T 2rpc_A 120 PFKCEFEGCDRRFANSSDRKKHMHVH 145 (155)
T ss_dssp SBCCSSTTCCCCBSSHHHHHHSSTTT
T ss_pred CccCCCCCCCCccCCHHHHHHHHHHh
Confidence 366664 666666655555555554
No 113
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.25 E-value=2 Score=31.00 Aligned_cols=42 Identities=33% Similarity=0.744 Sum_probs=29.6
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc---cCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE---SLHNCPGC 410 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe---~lh~CPgC 410 (424)
....|.-|...|..+ ..- .|++.||.+|=.-.-+ .-..||-|
T Consensus 19 ~~~~C~IC~~~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP-------VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC-------EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe-------EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356899999777532 222 7999999999654433 45589987
No 114
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=74.17 E-value=0.87 Score=33.95 Aligned_cols=27 Identities=41% Similarity=0.911 Sum_probs=19.2
Q ss_pred cee-eecCCc-cccCeEEcCCCCccccCCC
Q 014440 290 SIC-SCHKEV-KIGVGYTCPRCKARVCELP 317 (424)
Q Consensus 290 a~C-~CH~~~-~~~~Gy~Cp~C~s~~C~lP 317 (424)
.+| +|+... ... -|.||+|+.+||+|+
T Consensus 12 ~~C~vC~~~~~~~a-kY~CPrC~~rYCSl~ 40 (59)
T 1x4s_A 12 GPCGFCPAGEVQPA-RYTCPRCNAPYCSLR 40 (59)
T ss_dssp EEECSSCTTCCEEE-CEECTTTCCEESSHH
T ss_pred CcCcCCCCCcCCCc-cccCcCCCCCccChH
Confidence 355 566532 233 799999999999874
No 115
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=74.02 E-value=0.95 Score=32.55 Aligned_cols=55 Identities=18% Similarity=0.423 Sum_probs=36.5
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQSN 417 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~~~ 417 (424)
...|.-|...+..+.. ......-..|++.||.+|-.-.-+.-..||.|.......
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQ-NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHH-TTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccc-cCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 3468899877754210 011234568999999999865555567999997654433
No 116
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.81 E-value=2.9 Score=30.47 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=33.2
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhh-ccCCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIH-ESLHNCPGCESLRQS 416 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fih-e~lh~CPgC~~~~~~ 416 (424)
...|.-|...+..+. . ..|++.||.+|=.-.- ..-..||-|......
T Consensus 15 ~~~C~IC~~~~~~p~-------~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPK-------Q-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESSCC-------C-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcCee-------E-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 557999987775431 1 4799999999965433 455689999765443
No 117
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=73.80 E-value=1.6 Score=36.26 Aligned_cols=45 Identities=20% Similarity=0.624 Sum_probs=31.5
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccc-hhhhccCCCCCCCCCCCC
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECD-IYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd-~fihe~lh~CPgC~~~~~ 415 (424)
..|.-|...|..+ .. -.|++.||.+|= .++...-..||-|.....
T Consensus 53 ~~C~IC~~~~~~p-------~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFRP-------IT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSSE-------EE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcCChHHcCc-------EE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 4699998777532 11 279999999995 444445569999976443
No 118
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=73.58 E-value=1.4 Score=35.42 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=20.1
Q ss_pred eEEcC--CCCcccc-------------CCCCCCCCCCceecCchhHHh
Q 014440 303 GYTCP--RCKARVC-------------ELPTECRICGLQLVSSPHLAR 335 (424)
Q Consensus 303 Gy~Cp--~C~s~~C-------------~lP~~C~~C~l~Lvs~phLar 335 (424)
.|.|| .|...|- +-|-.|+.|+..+.+...|.+
T Consensus 5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~ 52 (124)
T 1ubd_C 5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKR 52 (124)
T ss_dssp CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHH
T ss_pred cccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHH
Confidence 57777 6665543 223467777777776666654
No 119
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=73.24 E-value=5.3 Score=33.18 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=18.8
Q ss_pred CCceeeccc--------ccccCCCCCCceeeCCCcCccc
Q 014440 362 RSTCFGCQQ--------SLLASGNKAGLCVACPKCKKHF 392 (424)
Q Consensus 362 ~~~C~~C~~--------~~~~~~~~~~~~~~C~~C~~~f 392 (424)
...|..|.. +.-+.+......|.|.+|++.+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp CSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred ccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 357888842 2222233445679999998754
No 120
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=73.17 E-value=1.9 Score=33.82 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=29.2
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|+|++|+..|- +-|-.|+.|+..+.....|.|-
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H 75 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHH
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHh
Confidence 699999999777 3567899999999999999775
No 121
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.87 E-value=2.7 Score=31.04 Aligned_cols=47 Identities=30% Similarity=0.666 Sum_probs=32.7
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc---cCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE---SLHNCPGCESLRQ 415 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe---~lh~CPgC~~~~~ 415 (424)
....|.-|...+..+ ..- .|++.||.+|-.-.-+ .-..||-|.....
T Consensus 19 ~~~~C~IC~~~~~~~-------~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQKP-------VTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCSSE-------EEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccCCe-------EEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 356899999777532 222 7999999999754433 3458999976544
No 122
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.79 E-value=2.4 Score=35.78 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=18.4
Q ss_pred CCceeecccc--------cccCCCCCCceeeCCCcCccc
Q 014440 362 RSTCFGCQQS--------LLASGNKAGLCVACPKCKKHF 392 (424)
Q Consensus 362 ~~~C~~C~~~--------~~~~~~~~~~~~~C~~C~~~f 392 (424)
...|..|... .-+.+......|.|.+|++.+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w 110 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF 110 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEE
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEe
Confidence 4578888422 212222345578999998754
No 123
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=72.58 E-value=2.1 Score=31.30 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=28.4
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|++|+..|- +-|-.|+.||..+....+|.+-
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H 51 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHH
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHH
Confidence 589999998776 4577999999999999988763
No 124
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=72.50 E-value=1.8 Score=29.76 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=25.9
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLAR 335 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLar 335 (424)
-|.|+.|+..|- +-|-.|+.|+..+.....|.+
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 50 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRY 50 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHH
Confidence 588999988765 456789999999988888865
No 125
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=72.07 E-value=1.5 Score=43.81 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=30.9
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC 410 (424)
..+.|..|...|.+-. ..+|.|..|+..+|..|-..+. +|++=
T Consensus 356 ~~t~C~~C~~~~~g~~---~qg~~C~~C~~~~h~~C~~~~~----~C~~~ 398 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTF---YQGYRCYRCRAPAHKECLGRVP----PCGRH 398 (406)
T ss_dssp SCCBCTTTCCBCCSSS---SCEEEETTTCCEECGGGGGGSC----CC---
T ss_pred CCCCCccccchhceeC---CCCCCCCCCcCccchhhhhhCC----CCCCC
Confidence 3568999998885322 2479999999999999977664 37654
No 126
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=71.96 E-value=2.6 Score=31.88 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=28.0
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
....|..|.+.+.- ..|.| .|+..||..= -|-.-|+|++
T Consensus 14 ~~~rC~~C~kkvgl------~~f~C-rCg~~FC~~H---Ry~e~H~C~f 52 (64)
T 1wfh_A 14 RPNRCTVCRKRVGL------TGFMC-RCGTTFCGSH---RYPEVHGCTF 52 (64)
T ss_dssp SCCCCTTTCCCCCT------TCEEC-SSSCEECTTT---CSTTTTTCCC
T ss_pred cCCcChhhCCccCc------cCEEe-ecCCEecccc---CCcccCCCCc
Confidence 45689999976531 15999 7999999763 2345788875
No 127
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=71.96 E-value=1.1 Score=39.25 Aligned_cols=45 Identities=27% Similarity=0.577 Sum_probs=32.3
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc-CCCCCCCCCCC
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES-LHNCPGCESLR 414 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~-lh~CPgC~~~~ 414 (424)
..|.-|...|.. ...+..|++.||.+|=.-.-.. -..||-|-...
T Consensus 55 ~~C~IC~~~~~~-------p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN-------TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS-------EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhhC-------cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 379999877753 2456789999999996433333 56799997543
No 128
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.63 E-value=3.5 Score=34.37 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=42.7
Q ss_pred eEEcCCCCccccCCCCCCCCCCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCcee--ecccccccCC---
Q 014440 303 GYTCPRCKARVCELPTECRICGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCF--GCQQSLLASG--- 376 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP~~C~~C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~--- 376 (424)
-|.|+.|. |..|+..+.+...|.+-.- |. .. ....|. .|.+.|....
T Consensus 34 ~~~C~~c~---------C~~c~~~f~~~~~l~~H~~~h~-~~-----------------~~~~C~~~~C~~~f~~~~~l~ 86 (155)
T 2gli_A 34 EFVCHWGG---------CSRELRPFKAQYMLVVHMRRHT-GE-----------------KPHKCTFEGCRKSYSRLENLK 86 (155)
T ss_dssp CCCCCBTT---------CTTTTCCCSSHHHHHHHTHHHH-CC-----------------CCCCCCSTTCCCCCSSHHHHH
T ss_pred ceeCCCCC---------ccchhhhhhhHHHHHHHHHhcC-CC-----------------CCccCCCCCCCCcccCHHHHH
Confidence 57777663 6666777776666654321 10 00 123465 4776665331
Q ss_pred -----CCCCceeeCCC--cCcccccccchhhhc-cCC
Q 014440 377 -----NKAGLCVACPK--CKKHFCLECDIYIHE-SLH 405 (424)
Q Consensus 377 -----~~~~~~~~C~~--C~~~fC~dCd~fihe-~lh 405 (424)
-.....|.|+. |+..|=..=++..|. ..|
T Consensus 87 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H 123 (155)
T 2gli_A 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123 (155)
T ss_dssp HHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred HHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhc
Confidence 01123577876 888887777777775 444
No 129
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=71.58 E-value=3.7 Score=33.24 Aligned_cols=51 Identities=22% Similarity=0.532 Sum_probs=33.0
Q ss_pred CCceeecccccccCCC----------CCCceeeCCCcCcccccccchhhh-----ccCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGN----------KAGLCVACPKCKKHFCLECDIYIH-----ESLHNCPGCES 412 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~----------~~~~~~~C~~C~~~fC~dCd~fih-----e~lh~CPgC~~ 412 (424)
...|.-|+..|..+.. .......-..|++.||.+|=.-.- +.-..||-|-.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 4589999988854320 011122356899999999954322 34569999964
No 130
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=71.47 E-value=1.4 Score=36.09 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=30.0
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccch-hhhccCCCCCCCCCC
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI-YIHESLHNCPGCESL 413 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~-fihe~lh~CPgC~~~ 413 (424)
..|.-|...|..+ +. - .|++.||.+|=. ++...-..||.|...
T Consensus 16 ~~C~iC~~~~~~p------~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 59 (115)
T 3l11_A 16 CQCGICMEILVEP------VT-L-PCNHTLCKPCFQSTVEKASLCCPFCRRR 59 (115)
T ss_dssp HBCTTTCSBCSSC------EE-C-TTSCEECHHHHCCCCCTTTSBCTTTCCB
T ss_pred CCCccCCcccCce------eE-c-CCCCHHhHHHHHHHHhHCcCCCCCCCcc
Confidence 4799999777532 11 2 699999999953 333335789999764
No 131
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.03 E-value=1.2 Score=32.83 Aligned_cols=23 Identities=30% Similarity=1.009 Sum_probs=17.8
Q ss_pred eee-ecCCccccCeEEcCCCCccccCCC
Q 014440 291 ICS-CHKEVKIGVGYTCPRCKARVCELP 317 (424)
Q Consensus 291 ~C~-CH~~~~~~~Gy~Cp~C~s~~C~lP 317 (424)
+|. |+. .. -|.||+|+.+||+++
T Consensus 14 ~C~vC~~---~~-kY~CPrC~~~yCSl~ 37 (56)
T 2yqq_A 14 VCVICLE---KP-KYRCPACRVPYCSVV 37 (56)
T ss_dssp CCTTTCS---CC-SEECTTTCCEESSHH
T ss_pred ccCcCcC---CC-eeeCCCCCCCeeCHH
Confidence 454 665 34 799999999999874
No 132
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=69.95 E-value=3.4 Score=35.92 Aligned_cols=90 Identities=23% Similarity=0.582 Sum_probs=58.2
Q ss_pred eEEc--CCCCcccc--------------CCCCCCC--CCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCC
Q 014440 303 GYTC--PRCKARVC--------------ELPTECR--ICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISR 362 (424)
Q Consensus 303 Gy~C--p~C~s~~C--------------~lP~~C~--~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~ 362 (424)
-|.| +.|...|- +-|-.|+ .|+..+.+...|.+-. +|.-.. ..
T Consensus 42 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~-----------------~~ 104 (190)
T 1tf6_A 42 PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI-----------------CV 104 (190)
T ss_dssp SSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTT-----------------SC
T ss_pred CccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCc-----------------ce
Confidence 5777 67776553 2345677 7888888877776643 232111 13
Q ss_pred Cce--eecccccccCC--------CCCCceeeCCC--cCcccccccchhhhccCCC---CCC
Q 014440 363 STC--FGCQQSLLASG--------NKAGLCVACPK--CKKHFCLECDIYIHESLHN---CPG 409 (424)
Q Consensus 363 ~~C--~~C~~~~~~~~--------~~~~~~~~C~~--C~~~fC~dCd~fihe~lh~---CPg 409 (424)
..| ..|.+.|.... -.....|.|+. |+..|=..-++..|...|. |+.
T Consensus 105 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~~~C~~ 166 (190)
T 1tf6_A 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 166 (190)
T ss_dssp CEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCSCCCCS
T ss_pred eeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCCCcCCC
Confidence 468 77888886432 01123589977 9999988888888877764 677
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=69.93 E-value=0.92 Score=45.61 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=0.0
Q ss_pred cccCCCCCceeecccccccCCCCCCceeeCCCcCcccccccchh-------hhccCCCCCCCCC
Q 014440 356 DLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY-------IHESLHNCPGCES 412 (424)
Q Consensus 356 ~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f-------ihe~lh~CPgC~~ 412 (424)
|........|..|..+|.-. ..++.|-.|+..||..|.-+ .+.....|-.|-.
T Consensus 369 w~~~~~~~~c~~c~~~f~~~----~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 369 LVPVTHVMMCMNCGCDFSLT----LRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCcccCCcCCCcCCCCCCc----chhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 33333456899999988522 13588999999999999843 2334677888854
No 134
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=69.90 E-value=4.5 Score=31.21 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=32.4
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhh-ccCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIH-ESLHNCPGCES 412 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fih-e~lh~CPgC~~ 412 (424)
....|.-|.-++...+ ...+.| .|++.||..|-.-+- +.-..||.|-.
T Consensus 10 ~~~~CpICle~~~~~d---~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~ 58 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD---INFFPC-TCGYQICRFCWHRIRTDENGLCPACRK 58 (78)
T ss_dssp CCCBCTTTCCBCCTTT---TTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCC
T ss_pred cCCcCCccCccCcccc---cccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCC
Confidence 3568999997764211 122345 699999999975543 34568999965
No 135
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.89 E-value=2.6 Score=31.86 Aligned_cols=42 Identities=24% Similarity=0.558 Sum_probs=30.3
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcc-cccccchhhhccCCCCCCCCCCCCC
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDIYIHESLHNCPGCESLRQS 416 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~fihe~lh~CPgC~~~~~~ 416 (424)
..|.-|...+..+ + --.|++. ||.+|- +.+..||.|......
T Consensus 26 ~~C~IC~~~~~~~------~--~~pCgH~~~C~~C~----~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI------V--FVPCGHLVTCKQCA----EAVDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB------C--CSSSCCCCBCHHHH----HHCSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE------E--EecCCCHHHHHHHh----hCCCCCccCCceecC
Confidence 4699998666432 1 2369999 999997 467899999765443
No 136
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=68.71 E-value=3.6 Score=35.78 Aligned_cols=91 Identities=30% Similarity=0.562 Sum_probs=63.7
Q ss_pred eEEc--CCCCcccc--------------CCCCCC--CCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCC
Q 014440 303 GYTC--PRCKARVC--------------ELPTEC--RICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISR 362 (424)
Q Consensus 303 Gy~C--p~C~s~~C--------------~lP~~C--~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~ 362 (424)
-|.| +.|+..|- +-|-.| +.|+..+.+...|.+-. |+- ...
T Consensus 12 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------------~~~ 72 (190)
T 1tf6_A 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-------------------EKN 72 (190)
T ss_dssp CCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTT-------------------CCC
T ss_pred ceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccC-------------------CCc
Confidence 6888 68887765 356789 88999999998887642 211 013
Q ss_pred Ccee--ecccccccCC----------CCCCceeeC--CCcCcccccccchhhhccCC------CCCC--CCC
Q 014440 363 STCF--GCQQSLLASG----------NKAGLCVAC--PKCKKHFCLECDIYIHESLH------NCPG--CES 412 (424)
Q Consensus 363 ~~C~--~C~~~~~~~~----------~~~~~~~~C--~~C~~~fC~dCd~fihe~lh------~CPg--C~~ 412 (424)
..|. .|.+.|.... ......|.| +.|+..|=..=++..|...| .||. |..
T Consensus 73 ~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k 144 (190)
T 1tf6_A 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDK 144 (190)
T ss_dssp EECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCC
T ss_pred eeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCc
Confidence 4688 8988886431 112346999 89999999888887776554 6966 964
No 137
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=67.08 E-value=0.86 Score=34.42 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=42.9
Q ss_pred CCC--CCCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCceeecccccccCCC--------CCCceeeCCC
Q 014440 319 ECR--ICGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGN--------KAGLCVACPK 387 (424)
Q Consensus 319 ~C~--~C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~--------~~~~~~~C~~ 387 (424)
.|+ .|+..+.+...|.+-.- |. .. ....|.-|.+.|..... .....|.|+.
T Consensus 6 ~C~~~~C~~~f~~~~~l~~H~~~h~-~~-----------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~ 67 (90)
T 1a1h_A 6 ACPVESCDRRFSQSGSLTRHIRIHT-GQ-----------------KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67 (90)
T ss_dssp ECCSSSCCCEESSHHHHHHHHHHHH-CC-----------------CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred ECCCCCCCCccCCHHHHHHHHHHhC-CC-----------------CCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCC
Confidence 454 47888887777765321 21 00 12357778777754310 0123599999
Q ss_pred cCcccccccchhhhccCC
Q 014440 388 CKKHFCLECDIYIHESLH 405 (424)
Q Consensus 388 C~~~fC~dCd~fihe~lh 405 (424)
|+..|-..-++-.|...|
T Consensus 68 C~~~f~~~~~l~~H~~~H 85 (90)
T 1a1h_A 68 CGRKFARSDERKRHTKIH 85 (90)
T ss_dssp TCCEESSHHHHHHHHGGG
T ss_pred CCchhCCHHHHHHHHHHh
Confidence 999998887777776665
No 138
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.97 E-value=3.5 Score=31.68 Aligned_cols=53 Identities=19% Similarity=0.398 Sum_probs=34.2
Q ss_pred CCCceeecccccccCC-------CCCCceeeCCCcCcccccccchhhhccCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASG-------NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~-------~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~ 413 (424)
....|.-|...|...- ........-+.|++.|+.+|=.---+.-..||-|-..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 73 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCB
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCC
Confidence 3557999988885420 0111234566899999999964333444699999653
No 139
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=66.30 E-value=6.9 Score=30.31 Aligned_cols=34 Identities=26% Similarity=0.585 Sum_probs=26.9
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|= +-|-.|+.|+..+.....|.+-
T Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 64 (106)
T 2ee8_A 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64 (106)
T ss_dssp CCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHH
T ss_pred CeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHH
Confidence 688998887664 3567899999999888888764
No 140
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=66.27 E-value=2.9 Score=36.64 Aligned_cols=26 Identities=31% Similarity=0.788 Sum_probs=22.3
Q ss_pred eEEcCCCCccccCCCC--CCCCCCceec
Q 014440 303 GYTCPRCKARVCELPT--ECRICGLQLV 328 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP~--~C~~C~l~Lv 328 (424)
-|.|+-|+.+|=..++ .||.||..+.
T Consensus 132 ~y~C~~Cg~~~~~~~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPPGGVCPDCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSCCGGGBCTTTCCBEE
T ss_pred EEECCCCCCcccCCCCCCcCCCCCCcce
Confidence 7999999999977665 8999998764
No 141
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=65.03 E-value=3.1 Score=28.41 Aligned_cols=33 Identities=24% Similarity=0.663 Sum_probs=22.1
Q ss_pred EEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 304 YTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 304 y~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
|.|+.|+..|- +-|-.|+.|+..+.....|.+-
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 48 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHH
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHH
Confidence 56777766553 2355788888888877777653
No 142
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.91 E-value=3.9 Score=29.67 Aligned_cols=34 Identities=26% Similarity=0.589 Sum_probs=27.9
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|- +-|-.|+.|+..+.....|.+-
T Consensus 14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H 61 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61 (72)
T ss_dssp CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHH
T ss_pred CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHH
Confidence 799999988764 3567899999999998888763
No 143
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.40 E-value=3.2 Score=34.40 Aligned_cols=30 Identities=20% Similarity=0.618 Sum_probs=26.0
Q ss_pred eEEcCCCCcccc---CCCCCCCCCCceecCchh
Q 014440 303 GYTCPRCKARVC---ELPTECRICGLQLVSSPH 332 (424)
Q Consensus 303 Gy~Cp~C~s~~C---~lP~~C~~C~l~Lvs~ph 332 (424)
-|.|-.|+-.|+ ..|+.||.|+..-|..|-
T Consensus 67 p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 67 PAQCRKCGFVFKAEINIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp CCBBTTTCCBCCCCSSCCSSCSSSCCCCBCCCC
T ss_pred CcChhhCcCeecccCCCCCCCcCCCCCccCCcc
Confidence 688999999997 688999999999887763
No 144
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=63.80 E-value=2.5 Score=31.68 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=41.4
Q ss_pred CCCC--CCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCcee--ecccccccCCC--------CCCceeeC
Q 014440 319 ECRI--CGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCF--GCQQSLLASGN--------KAGLCVAC 385 (424)
Q Consensus 319 ~C~~--C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~--------~~~~~~~C 385 (424)
.|+. |+..+.+...|.+-.- |. .. ....|. .|.+.|..... .....|.|
T Consensus 7 ~C~~~~C~~~f~~~~~l~~H~~~h~-~~-----------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C 68 (89)
T 2wbs_A 7 TCDYAGCGKTYTKSSHLKAHLRTHT-GE-----------------KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 68 (89)
T ss_dssp ECCSTTTCCEESSHHHHHHHHTTSC-SS-----------------CCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEEC
T ss_pred eCCCCCCCCcCCCHHHHHHHHHhcC-CC-----------------CCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccC
Confidence 3555 8888888888765321 11 00 123575 68877754310 01235999
Q ss_pred CCcCcccccccchhhhccCC
Q 014440 386 PKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 386 ~~C~~~fC~dCd~fihe~lh 405 (424)
+.|+..|=..=++-.|...|
T Consensus 69 ~~C~~~f~~~~~l~~H~~~H 88 (89)
T 2wbs_A 69 QKCDRAFSRSDHLALHMKRH 88 (89)
T ss_dssp SSSSCEESSHHHHHHHGGGG
T ss_pred CCCCcccCCHHHHHHHHHhh
Confidence 99999987766666665544
No 145
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=63.40 E-value=4.8 Score=31.28 Aligned_cols=43 Identities=33% Similarity=0.638 Sum_probs=31.4
Q ss_pred CCceee--cccccccCCCCCCceeeCC-----CcCcccccccchhhhccCCCCC
Q 014440 362 RSTCFG--CQQSLLASGNKAGLCVACP-----KCKKHFCLECDIYIHESLHNCP 408 (424)
Q Consensus 362 ~~~C~~--C~~~~~~~~~~~~~~~~C~-----~C~~~fC~dCd~fihe~lh~CP 408 (424)
-..|-+ |+..+.... ....-.|+ .|+..||..|-.--|+ ..|.
T Consensus 25 ~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSS
T ss_pred cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC--Cccc
Confidence 567887 987765432 12246898 9999999999988888 5553
No 146
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=62.86 E-value=3.3 Score=27.06 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=20.6
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2el4_A 12 PYGCSQCAKTFSLKSQLIVHQRSHT 36 (46)
T ss_dssp SEECSSSSCEESSHHHHHHHGGGSS
T ss_pred ceECCCCCchhCCHHHHHHHHHHhC
Confidence 4889999999998888888877663
No 147
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=62.83 E-value=1.7 Score=35.79 Aligned_cols=46 Identities=28% Similarity=0.580 Sum_probs=31.6
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchh-hhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY-IHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f-ihe~lh~CPgC~~~~~ 415 (424)
...|.-|...+..+ ... .|++.||.+|=.- +...-..||.|.....
T Consensus 18 ~~~C~IC~~~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 18 KYECPICLMALREA-------VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp GGBCTTTCSBCSSE-------EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCcCChhhcCe-------EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 45799999777532 334 5999999999643 3333349999976443
No 148
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.41 E-value=2.7 Score=33.26 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=24.3
Q ss_pred ecCCccccCe-EEcCCCCccccCCCCCCCCCCcee
Q 014440 294 CHKEVKIGVG-YTCPRCKARVCELPTECRICGLQL 327 (424)
Q Consensus 294 CH~~~~~~~G-y~Cp~C~s~~C~lP~~C~~C~l~L 327 (424)
|+..+...++ |.|+.|.+-|=..+ .||-||..|
T Consensus 8 C~~~l~~~~~~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 8 CHHALERNGDTAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp SCSCCEECSSEEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCccccCCCceECccccccCCCcc-cCcchhhHH
Confidence 6666654434 45999999887777 899999764
No 149
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.37 E-value=6.2 Score=30.06 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhcc---CCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHES---LHNCPGCESL 413 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~---lh~CPgC~~~ 413 (424)
....|.-|...|.... .....- .|++.||.+|=.-.-+. -..||.|...
T Consensus 14 ~~~~C~IC~~~~~~~~---~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 14 EVLECPICMESFTEEQ---LRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp SCCBCTTTCCBCCTTS---SCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCCCccCCccccccC---CCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 3557999997775421 112223 69999999996544333 3789999763
No 150
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=62.20 E-value=3.6 Score=28.51 Aligned_cols=34 Identities=24% Similarity=0.605 Sum_probs=24.8
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|- +-|-.|+.|+..+.+...|.+-
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 49 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHH
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence 377888876654 2355788899888888888764
No 151
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.03 E-value=6.4 Score=28.81 Aligned_cols=34 Identities=29% Similarity=0.728 Sum_probs=27.8
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|- +-|-.|+.|+..+....+|.+-
T Consensus 18 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H 65 (77)
T 2cot_A 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65 (77)
T ss_dssp SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHH
T ss_pred CEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHH
Confidence 689999987765 3456899999999999988764
No 152
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=61.02 E-value=5.1 Score=30.70 Aligned_cols=24 Identities=25% Similarity=0.826 Sum_probs=20.0
Q ss_pred eEEcCCCCccccCC---CCCCCCCCce
Q 014440 303 GYTCPRCKARVCEL---PTECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C~l---P~~C~~C~l~ 326 (424)
-|+|+.|+..|=.. ++.|+-||-.
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~R 54 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHR 54 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCce
Confidence 79999999997654 4689999983
No 153
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.97 E-value=4.7 Score=29.19 Aligned_cols=52 Identities=19% Similarity=0.477 Sum_probs=33.2
Q ss_pred CCceeeccc-ccccCCCCCCceeeCCCcCcccccccchhh-hccCCCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQ-SLLASGNKAGLCVACPKCKKHFCLECDIYI-HESLHNCPGCESLRQSN 417 (424)
Q Consensus 362 ~~~C~~C~~-~~~~~~~~~~~~~~C~~C~~~fC~dCd~fi-he~lh~CPgC~~~~~~~ 417 (424)
...|.-|.. .+..+. ....=..|++.||.+|-.-. .+.-..||.|.......
T Consensus 3 ~~~C~IC~~~~~~~~~----~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS----LKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSS----CCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCc----cCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 346999987 554331 11122479999999996443 34446799998755443
No 154
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=64.99 E-value=1.8 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=18.8
Q ss_pred eeCCCcCcccccccchhhhccCC
Q 014440 383 VACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fihe~lh 405 (424)
|.|+.|+..|-..-++-.|...|
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H 25 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLANHIRHH 25 (26)
Confidence 78999999998888877777665
No 155
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=60.47 E-value=5.1 Score=28.76 Aligned_cols=34 Identities=18% Similarity=0.561 Sum_probs=27.5
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|- +-|-.|+.|+..+...-.|.+-
T Consensus 9 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H 56 (70)
T 1x5w_A 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHH
Confidence 699999987664 3456899999999998888764
No 156
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=60.43 E-value=6.2 Score=30.22 Aligned_cols=27 Identities=22% Similarity=0.687 Sum_probs=21.4
Q ss_pred ceeeCCCcCcccccccchhhhccCCCCCCCCC
Q 014440 381 LCVACPKCKKHFCLECDIYIHESLHNCPGCES 412 (424)
Q Consensus 381 ~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~ 412 (424)
..|.|+.|+..|=++ ..+.+ .||.|..
T Consensus 27 v~Y~C~~CG~~~e~~----~~d~i-rCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS----RTDAV-RCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC----TTSTT-CCSSSCC
T ss_pred EEEECCCCCCcceeC----CCCCc-cCCCCCc
Confidence 469999999998766 44555 5999976
No 157
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.19 E-value=3.7 Score=31.28 Aligned_cols=40 Identities=33% Similarity=0.644 Sum_probs=27.4
Q ss_pred CCCceeecccccccCCCCCCc--eeeCCCcCcccccccchhhhccCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGL--CVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~--~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
....|+.|.+.+.-. . .|.| .|+..||.. --|-.-|+|++
T Consensus 14 ~~~rC~~C~kk~gL~-----~~egf~C-rCg~~FC~~---HRy~e~H~C~f 55 (67)
T 1x4w_A 14 SRRRCFQCQTKLELV-----QQELGSC-RCGYVFCML---HRLPEQHDCTF 55 (67)
T ss_dssp CTTBCSSSCCBCCHH-----HHHHHCC-SSSCCCCTT---TCSTGGGTCSS
T ss_pred cCCcchhhCCeeccc-----ccCceEe-cCCCEehhc---cCCccccCCcc
Confidence 356899998766311 1 2899 999999974 33445677765
No 158
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=59.80 E-value=2.7 Score=24.14 Aligned_cols=25 Identities=36% Similarity=0.691 Sum_probs=20.7
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|+..|-..-++-.|...|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHILLHE 26 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHHTGGG
T ss_pred CccCCCCCchhCCHHHHHHHHHHhc
Confidence 3889999999998888888876663
No 159
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=59.55 E-value=3.3 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=19.7
Q ss_pred eeCCCcCcccccccchhhhccCCC
Q 014440 383 VACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
|.|+.|++.|-..-.+-.|...|.
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~~h~ 25 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQRVHK 25 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred ccCCCCCCcCCCHHHHHHHHHHcC
Confidence 789999999988888888876663
No 160
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.54 E-value=1.8 Score=33.91 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=31.4
Q ss_pred eEEcCCCCcccc----------------CCCCCCCCCCceecCchhHHhh--hcc
Q 014440 303 GYTCPRCKARVC----------------ELPTECRICGLQLVSSPHLARS--YHH 339 (424)
Q Consensus 303 Gy~Cp~C~s~~C----------------~lP~~C~~C~l~Lvs~phLars--yhh 339 (424)
-|.|+.|...|- +-|-.|+.|+..+....+|.+- .||
T Consensus 24 ~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~ 78 (98)
T 2gqj_A 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78 (98)
T ss_dssp CCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred CcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHc
Confidence 799999999887 4467999999999999999875 455
No 161
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=59.12 E-value=6.5 Score=30.92 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=29.6
Q ss_pred eEEcCCCCccc-c-------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARV-C-------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~-C-------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|++|+..| - +-|-.|..||..+....+|.+-
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H 81 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYH 81 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHH
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHH
Confidence 69999999988 3 4577999999999999999765
No 162
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=59.03 E-value=2.9 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.2
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|+..|-..-.+-.|...|.
T Consensus 3 ~~~C~~C~~~f~~~~~l~~H~~~h~ 27 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMRHLETHD 27 (30)
T ss_dssp CEECTTTCCEESCHHHHHHHHHTTC
T ss_pred CccCCCCCcccCCHHHHHHHHHHhc
Confidence 4899999999998888888877764
No 163
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=58.92 E-value=6.4 Score=30.57 Aligned_cols=38 Identities=29% Similarity=0.672 Sum_probs=27.0
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
...|+.|.+.+.- ..|.|. |+..||..=- +-.-|.|++
T Consensus 25 ~nRC~~CrKkvgL------~gf~Cr-Cg~~FCs~HR---y~e~H~C~f 62 (74)
T 1wfl_A 25 KNRCFMCRKKVGL------TGFDCR-CGNLFCGLHR---YSDKHNCPY 62 (74)
T ss_dssp TTBCSSSCCBCGG------GCEECT-TSCEECSSSC---STTTTTCCC
T ss_pred CCcChhhCCcccc------cCeecC-CCCEechhcC---CCccCCCcc
Confidence 4589999976532 249999 9999997532 334677765
No 164
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=58.87 E-value=5 Score=29.93 Aligned_cols=25 Identities=32% Similarity=0.716 Sum_probs=20.2
Q ss_pred EEcCCCCccccCCCCCCCCCCceecCc
Q 014440 304 YTCPRCKARVCELPTECRICGLQLVSS 330 (424)
Q Consensus 304 y~Cp~C~s~~C~lP~~C~~C~l~Lvs~ 330 (424)
-.||+|+.. .|--.||.||....++
T Consensus 7 r~C~~CgvY--TLk~~CP~CG~~T~~~ 31 (60)
T 2apo_B 7 KKCPKCGLY--TLKEICPKCGEKTVIP 31 (60)
T ss_dssp EECTTTCCE--ESSSBCSSSCSBCBCC
T ss_pred eeCCCCCCE--eccccCcCCCCcCCCC
Confidence 579999876 4577899999987665
No 165
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=58.30 E-value=1.7 Score=24.82 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=18.5
Q ss_pred eeCCCcCcccccccchhhhccCC
Q 014440 383 VACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fihe~lh 405 (424)
|.|+.|+..|...-.+-.|...|
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCSSCCCCCCTTTHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHh
Confidence 78999999998887777776544
No 166
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.54 E-value=4.5 Score=29.42 Aligned_cols=34 Identities=38% Similarity=0.809 Sum_probs=27.5
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
.|.|+.|...|- +-|-.|+.|+..+....+|.+-
T Consensus 17 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H 64 (74)
T 2lce_A 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64 (74)
T ss_dssp SBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHH
T ss_pred CeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHH
Confidence 689999987764 3456899999999998888764
No 167
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=57.19 E-value=3.9 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=19.9
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h 26 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMETHYRVH 26 (28)
T ss_dssp SEECSSSCCEESCHHHHHHHHTTS
T ss_pred CccCCCCCcccCCHHHHHHHHHhc
Confidence 489999999998888887787665
No 168
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=57.16 E-value=3.9 Score=27.06 Aligned_cols=8 Identities=50% Similarity=1.738 Sum_probs=5.7
Q ss_pred eEEcCCCC
Q 014440 303 GYTCPRCK 310 (424)
Q Consensus 303 Gy~Cp~C~ 310 (424)
||+||.|.
T Consensus 5 GFiCP~C~ 12 (34)
T 3mjh_B 5 GFICPQCM 12 (34)
T ss_dssp EEECTTTC
T ss_pred ccCCcHHH
Confidence 78888654
No 169
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.02 E-value=3.7 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.818 Sum_probs=18.9
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2epw_A 12 PCKCTECGKAFCWKSQLIMHQRTH 35 (46)
T ss_dssp SEECSSSCCEESSSHHHHHHHHHC
T ss_pred CeeCCCCCCccCCHHHHHHHHHHh
Confidence 488999998888888887776554
No 170
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.02 E-value=4.5 Score=26.41 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=19.0
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2ytn_A 12 PYKCNECGKVFTQNSHLARHRGIH 35 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHGGGT
T ss_pred CeECCCCCCeeCCHHHHHHHhhhc
Confidence 478888888888888887776665
No 171
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.54 E-value=6.4 Score=28.84 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=31.4
Q ss_pred eEEcCCCCcccc-----------------CCCCCCCCCCceecCchhHHhhh--cccC
Q 014440 303 GYTCPRCKARVC-----------------ELPTECRICGLQLVSSPHLARSY--HHLF 341 (424)
Q Consensus 303 Gy~Cp~C~s~~C-----------------~lP~~C~~C~l~Lvs~phLarsy--hhl~ 341 (424)
-|.|+.|...|- +-|-.|+.|+..+.....|.+-. ||--
T Consensus 7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~ 64 (78)
T 2d9h_A 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64 (78)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence 699999998764 45779999999999999998764 4543
No 172
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=55.83 E-value=3.9 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.610 Sum_probs=17.8
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++..|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2em0_A 12 TWKCRECDMCFSQASSLRLHQNVH 35 (46)
T ss_dssp CCCCSSSCCCCSSHHHHHHHGGGG
T ss_pred CeECCCCCcccCCHHHHHHHHHHc
Confidence 477888888888777777776554
No 173
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=55.81 E-value=1.5 Score=34.82 Aligned_cols=77 Identities=22% Similarity=0.498 Sum_probs=49.7
Q ss_pred CCCCCC--CCceecCchhHHhh--hcccCCCCCCcccCccccccccCCCCCcee--ecccccccCCC--------CCCce
Q 014440 317 PTECRI--CGLQLVSSPHLARS--YHHLFPIAPFDEATPSRLNDLHNISRSTCF--GCQQSLLASGN--------KAGLC 382 (424)
Q Consensus 317 P~~C~~--C~l~Lvs~phLars--yhhl~p~~~f~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~--------~~~~~ 382 (424)
|-.|+. |+..+.+...|.+- .|+- . ....|. .|.+.|..... .....
T Consensus 6 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~-----------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~ 66 (119)
T 2jp9_A 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTG--E-----------------KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66 (119)
T ss_dssp CBCCCSTTSCCCBSCHHHHHHHHHHHHT--T-----------------CCEECCSTTCCCEESSHHHHHHHHHHHHCCCC
T ss_pred eeeCCCCCCcchhCCHHHHHHHHHhhCC--C-----------------CCccCCCCCCcCccCCHHHHHHHHHHcCCCCC
Confidence 345665 88888888777653 2321 0 123577 78887764310 01235
Q ss_pred eeCCCcCcccccccchhhhccCC------CC--CCCCC
Q 014440 383 VACPKCKKHFCLECDIYIHESLH------NC--PGCES 412 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fihe~lh------~C--PgC~~ 412 (424)
|.|+.|+..|=..=++-.|...| .| |.|..
T Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~ 104 (119)
T 2jp9_A 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQK 104 (119)
T ss_dssp EECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCC
T ss_pred ccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCcc
Confidence 99999999999888887775544 68 88864
No 174
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=55.51 E-value=2.8 Score=29.54 Aligned_cols=25 Identities=28% Similarity=0.759 Sum_probs=16.6
Q ss_pred eEEcCCCCc-cccCCC----CCCCCCCcee
Q 014440 303 GYTCPRCKA-RVCELP----TECRICGLQL 327 (424)
Q Consensus 303 Gy~Cp~C~s-~~C~lP----~~C~~C~l~L 327 (424)
-+.||.|++ ..=.-+ .+|+.||+.+
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 578999987 322212 4899999865
No 175
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.43 E-value=5 Score=26.16 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=19.0
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytg_A 12 PFKCGECGKSYNQRVHLTQHQRVH 35 (46)
T ss_dssp SEECTTTCCEESSSHHHHTTGGGG
T ss_pred CeECCCCCcccCCHHHHHHHHHHc
Confidence 488888888888888887776655
No 176
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.40 E-value=4.9 Score=26.14 Aligned_cols=24 Identities=25% Similarity=0.730 Sum_probs=18.7
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eop_A 12 PHECRECGKSFSFNSQLIVHQRIH 35 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred CeeCCCCCchhCCHHHHHHHHHHc
Confidence 478888888888888887776655
No 177
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=54.97 E-value=5.1 Score=42.12 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=37.6
Q ss_pred hhcccCCCCCCcccCccccccccCCCCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCC
Q 014440 336 SYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCE 411 (424)
Q Consensus 336 syhhl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~ 411 (424)
.-+|-|...+|.. ...|..|...|.+.. ..+|.|..|+..+|..|-..+ ..|++=.
T Consensus 516 ~~~H~F~~~~~~~-------------~t~C~~C~~~l~gl~---~qg~~C~~C~~~vHk~C~~~v----~~C~~~~ 571 (587)
T 3ky9_A 516 ANGHDFQMFSFEE-------------TTSCKACQMLLRGTF---YQGYRCHRCRASAHKECLGRV----PPCGRHG 571 (587)
T ss_dssp GGGCCEEEECCSS-------------CCBCTTTCSBCCSSS---CCEEEETTTCCEECSGGGGGS----CCC----
T ss_pred ccCCceeEEeCCC-------------Ccccccccccccccc---cCCcCCCCCCCccchhhhhcC----CCCCCCC
Confidence 3456666555543 458999998775332 247999999999999998876 3676544
No 178
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=54.77 E-value=3.7 Score=26.86 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=19.2
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ema_A 12 RYKCNECGKVFSRNSQLSQHQKIH 35 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHTGG
T ss_pred CcCCCCCcchhCCHHHHHHHHHhc
Confidence 488999999888888887776655
No 179
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.47 E-value=9.7 Score=28.34 Aligned_cols=44 Identities=23% Similarity=0.606 Sum_probs=31.1
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcc-cccccchhhhccCCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDIYIHESLHNCPGCESLRQS 416 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~fihe~lh~CPgC~~~~~~ 416 (424)
....|..|...+.+ -.---|++. ||.+|.. .+..||.|......
T Consensus 14 ~~~~C~IC~~~~~~--------~v~~pCgH~~~C~~C~~----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN--------WVLLPCRHTCLCDGCVK----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC--------CEETTTTBCCSCTTHHH----HCSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC--------EEEECCCChhhhHHHHh----cCCCCCCCCcchhc
Confidence 35689999855432 122358888 9999987 46899999775543
No 180
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.30 E-value=5.4 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.7
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2eq0_A 12 PYKCHECGKVFRRNSHLARHQLIH 35 (46)
T ss_dssp CEECTTTCCEESSHHHHHHHHTTT
T ss_pred CeECCCCCchhCCHHHHHHHHHHc
Confidence 488999999998888888886665
No 181
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=53.78 E-value=2.2 Score=35.05 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=33.8
Q ss_pred CCCceeecccccccCC----------CCCCceeeCCCcCcccccccchhhhccCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASG----------NKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~----------~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~ 413 (424)
....|.-|...|...- ........-..|++.|+.+|=.---..-..||-|-..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 3557999988876431 0001112335799999999965544556789999653
No 182
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=58.78 E-value=2.8 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=20.1
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|+..|-..-++-.|...|.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h~ 27 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVRIHT 27 (30)
Confidence 3889999999988888888876663
No 183
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.61 E-value=2.4 Score=31.24 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=32.8
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
....|.-|...+.. .-..|++.||.+|-.-.-+.-..||-|....
T Consensus 14 ~~~~C~IC~~~~~~---------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 14 DEEECCICMDGRAD---------LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCSSSCCSCCS---------EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCCeeCCcCccC---------cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 35689999866642 2346999999999765555778999996533
No 184
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=58.58 E-value=2.8 Score=24.25 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=19.7
Q ss_pred eeCCCcCcccccccchhhhccCCC
Q 014440 383 VACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
|.|+.|++.|-..-++-.|...|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLIAHVRQHT 26 (29)
Confidence 789999999988888888876663
No 185
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.27 E-value=4.4 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=18.0
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++..|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2elz_A 12 PYKCEDCGKGYNRRLNLDMHQRVH 35 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHGGGG
T ss_pred CeeCcccCchhCCHHHHHHHHHhc
Confidence 478888888888777777776554
No 186
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.17 E-value=6 Score=25.84 Aligned_cols=24 Identities=25% Similarity=0.683 Sum_probs=19.3
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2em5_A 12 SHQCHECGRGFTLKSHLNQHQRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTT
T ss_pred CeECCcCCCccCCHHHHHHHHHHh
Confidence 488999999888888888786665
No 187
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.11 E-value=2.2 Score=33.31 Aligned_cols=48 Identities=31% Similarity=0.619 Sum_probs=34.7
Q ss_pred CCCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCC
Q 014440 360 ISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410 (424)
Q Consensus 360 ~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC 410 (424)
.+...|.-|+.+|.--.+. .-.|+.|++..|.+|-+|.-...--|--|
T Consensus 23 ~~~r~CarC~~~LG~l~~~---g~~C~~Ck~rVC~~Crv~~~~~~W~C~VC 70 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPK---TNTCRGCNHLVCRDCRIQESNGTWRCKVC 70 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTT---TSEETTTTEECCTTSEEECSTTCEEEHHH
T ss_pred CCccchhhhCccccccccC---CCcCcccChhhcccccccCCCCCEEEeeC
Confidence 3567999999998644332 34699999999999999975544444333
No 188
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=53.02 E-value=6.5 Score=30.92 Aligned_cols=31 Identities=26% Similarity=0.668 Sum_probs=24.1
Q ss_pred CCceeeccc-ccccCCCCCCceeeCCCcCc----ccccccch
Q 014440 362 RSTCFGCQQ-SLLASGNKAGLCVACPKCKK----HFCLECDI 398 (424)
Q Consensus 362 ~~~C~~C~~-~~~~~~~~~~~~~~C~~C~~----~fC~dCd~ 398 (424)
...|-+|.+ ++. ..||+|..|.. .+|.+|-.
T Consensus 21 ~~~Cd~C~~~pI~------G~RykC~~C~d~~~yDLC~~C~~ 56 (82)
T 2fc7_A 21 GFKCDNCGIEPIQ------GVRWHCQDCPPEMSLDFCDSCSD 56 (82)
T ss_dssp SCCCSSSCCSSEE------SCEEEESSSCSSSCCEEEGGGTT
T ss_pred cCCCCCCCCCcce------eceEECCcCCCCcceecHHHHHh
Confidence 457999985 443 24899999987 79999964
No 189
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=52.87 E-value=5.1 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=19.6
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2el6_A 12 PYKCSQCEKSFSGKLRLLVHQRMH 35 (46)
T ss_dssp SEECSSSSCEESSHHHHHHHHGGG
T ss_pred CeECCCCCcccCCHHHHHHHHHHc
Confidence 488999999998888888886655
No 190
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.79 E-value=5.7 Score=25.90 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=18.3
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2epz_A 12 PFDCIDCGKAFSDHIGLNQHRRIH 35 (46)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHTTT
T ss_pred CeECCCCCceeCCHHHHHHHHHHh
Confidence 478888888888877777776655
No 191
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.74 E-value=6.3 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.3
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ene_A 12 PYKCNECGKVFRHNSYLSRHQRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTT
T ss_pred CeECCCCCchhCChHHHHHHHhhc
Confidence 488889988888888887776665
No 192
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=52.72 E-value=8 Score=27.19 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=23.5
Q ss_pred eEEcCCCCcccc----------------CCCCCCCCCCceecCchhHHh
Q 014440 303 GYTCPRCKARVC----------------ELPTECRICGLQLVSSPHLAR 335 (424)
Q Consensus 303 Gy~Cp~C~s~~C----------------~lP~~C~~C~l~Lvs~phLar 335 (424)
-|.|+.|+..|- +-|-.|+.|+..+.....|.+
T Consensus 10 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~ 58 (66)
T 2drp_A 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA 58 (66)
T ss_dssp EEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHH
T ss_pred ceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHH
Confidence 688888876543 234578888888888777765
No 193
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=52.43 E-value=5.5 Score=22.91 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=20.1
Q ss_pred eeCCCcCcccccccchhhh-ccCCC
Q 014440 383 VACPKCKKHFCLECDIYIH-ESLHN 406 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fih-e~lh~ 406 (424)
|.|+.|+..|-..-.+..| ...|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp SBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred cCCcccCcccCChHHHHHHHHHHcc
Confidence 7899999999888888888 66663
No 194
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=52.42 E-value=8.2 Score=28.20 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=28.9
Q ss_pred eEEcCCCCccccC----------------CCCCCCCCCceecCchhHHhh--hccc
Q 014440 303 GYTCPRCKARVCE----------------LPTECRICGLQLVSSPHLARS--YHHL 340 (424)
Q Consensus 303 Gy~Cp~C~s~~C~----------------lP~~C~~C~l~Lvs~phLars--yhhl 340 (424)
-|.|+.|...|-. -|-.|+.|+..+.....|.+- .||-
T Consensus 15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~ 70 (77)
T 2ct1_A 15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70 (77)
T ss_dssp SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence 6999999876541 356899999999999888764 3454
No 195
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=52.42 E-value=2.9 Score=32.07 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=39.3
Q ss_pred CCCCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCcee--ecccccccCCC--------CCCceeeCCCcC
Q 014440 321 RICGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCF--GCQQSLLASGN--------KAGLCVACPKCK 389 (424)
Q Consensus 321 ~~C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~--------~~~~~~~C~~C~ 389 (424)
+.|+..+....+|.+-.- |. .. ....|. .|.+.|..... .....|.|+.|+
T Consensus 21 ~~C~~~f~~~~~l~~H~~~h~-~~-----------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 82 (100)
T 2ebt_A 21 PGCTKVYTKSSHLKAHLRTHT-GE-----------------KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82 (100)
T ss_dssp SSCCCEESCHHHHHHHHHHHS-CC-----------------CCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred CCCCCcccCHHHHHHHHHHhC-CC-----------------CCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence 347888888777765321 21 01 123464 67777754310 112358999999
Q ss_pred cccccccchhhhccCC
Q 014440 390 KHFCLECDIYIHESLH 405 (424)
Q Consensus 390 ~~fC~dCd~fihe~lh 405 (424)
..|=..-++..|...|
T Consensus 83 ~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 83 RSFSRSDHLALHMKRH 98 (100)
T ss_dssp CBCSSHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHh
Confidence 9987777766665443
No 196
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=52.40 E-value=3.1 Score=32.63 Aligned_cols=16 Identities=44% Similarity=0.991 Sum_probs=13.6
Q ss_pred cccccccchhh-hccCC
Q 014440 390 KHFCLECDIYI-HESLH 405 (424)
Q Consensus 390 ~~fC~dCd~fi-he~lh 405 (424)
+.||..||+|+ ||+..
T Consensus 3 kYyCdYCd~~lt~Ds~s 19 (77)
T 3cw1_L 3 KFYCDYCDTYLTHDSPS 19 (77)
T ss_pred CcccccCCceecCCCHH
Confidence 57999999999 99753
No 197
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=52.19 E-value=6.3 Score=36.52 Aligned_cols=46 Identities=7% Similarity=-0.215 Sum_probs=31.0
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccch-hhhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI-YIHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~-fihe~lh~CPgC~~~~~ 415 (424)
.-.|.-|...|.++ . ...|++.||..|=. ++.+.-..||.|.....
T Consensus 208 ~~~c~i~~~~~~dP-------v-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 208 YLCGKISFELMREP-------C-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp TTBCTTTCSBCSSE-------E-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred ccCCcCcCCHhcCC-------e-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 44788998777643 2 33599999999943 33333445999976544
No 198
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.17 E-value=6.4 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.618 Sum_probs=20.1
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ep0_A 12 PYKCDVCHKSFRYGSSLTVHQRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTT
T ss_pred CeeCcccCcccCChHHHHHHHHHh
Confidence 588999999998888888887666
No 199
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.08 E-value=6.2 Score=25.75 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=18.8
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytq_A 12 PYGCSECGKAFSSKSYLIIHMRTH 35 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHTTT
T ss_pred CcCCCccChhhCChHHHHHHHHHh
Confidence 478888888888888877776655
No 200
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=51.84 E-value=7 Score=33.82 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=30.6
Q ss_pred CceeecccccccCCCCCCceeeCCCcCcccccccchhhhc-cCCCCCCCCCCCC
Q 014440 363 STCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE-SLHNCPGCESLRQ 415 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe-~lh~CPgC~~~~~ 415 (424)
..|.-|...|..+ .. ..|++.||..|=.-.-+ .-..||-|.....
T Consensus 79 ~~C~IC~~~~~~p-------v~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVYQP-------VT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCSSE-------EE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhcCC-------EE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 4799998777532 22 47999999999543323 3347999976443
No 201
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=51.84 E-value=3.3 Score=25.03 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.6
Q ss_pred eeCCCcCcccccccchhhhccCCC
Q 014440 383 VACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 383 ~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
|.|+.|++.|-..-++-.|...|.
T Consensus 3 ~~C~~C~k~f~~~~~L~~H~~~H~ 26 (32)
T 2kfq_A 3 FACPACPKRFMRSDALSKHIKTAF 26 (32)
T ss_dssp SSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred CCCCCCCcccCCHHHHHHHHHHHc
Confidence 789999999998888888887774
No 202
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=51.81 E-value=5.8 Score=25.79 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=18.9
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2em9_A 12 PYNCKECGKSFRWASCLLKHQRVH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHGGGG
T ss_pred CeECCccccccCChHHHHHHHHHh
Confidence 488888988888888877776655
No 203
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=51.61 E-value=4.2 Score=23.30 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=18.8
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..=++-.|...|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~H 26 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQAHMRGH 26 (27)
T ss_dssp TEEETTTTEEESCHHHHHHHHTTC
T ss_pred CcCCCCCCcccCCHHHHHHHHHhc
Confidence 488999999998777777776655
No 204
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=51.57 E-value=5 Score=28.60 Aligned_cols=28 Identities=18% Similarity=0.619 Sum_probs=19.4
Q ss_pred eEEcCCCCcccc-----------CCCCCCCCCCceecCc
Q 014440 303 GYTCPRCKARVC-----------ELPTECRICGLQLVSS 330 (424)
Q Consensus 303 Gy~Cp~C~s~~C-----------~lP~~C~~C~l~Lvs~ 330 (424)
.|.|+.|+..|- +-|-.|+.||..+...
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccC
Confidence 799999887553 3455788888776543
No 205
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.56 E-value=4.6 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=18.9
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2en1_A 12 PFKCEECGKRFTQNSQLHSHQRVH 35 (46)
T ss_dssp SEEETTTTEEESSHHHHHHHGGGG
T ss_pred CeeCCCCCcccCCHHHHHHHHHHc
Confidence 488888888888888877776655
No 206
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=51.52 E-value=12 Score=32.49 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhC-CcEEEEEEecc-hHHHHHHHHH
Q 014440 166 GDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES-KIRCSVIGLSA-EMFICKHLCQ 238 (424)
Q Consensus 166 G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~-~IrV~vIgLg~-e~~iLq~iA~ 238 (424)
+++.+.-++.+--- ..+ - ..+||++++ +|+..+++.+++. |++|.++|... -..-|++.|+
T Consensus 92 ~~~Dv~laiD~~~~-a~~-----~-d~~vLvSgD-----~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad 154 (165)
T 2qip_A 92 GDWDVGITLDAIEI-APD-----V-DRVILVSGD-----GDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCAD 154 (165)
T ss_dssp CCCHHHHHHHHHHH-GGG-----C-SEEEEECCC-----GGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSS
T ss_pred CCccHHHHHHHHHh-hcc-----C-CEEEEEECC-----hhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCC
Confidence 55666655554322 111 1 245555542 4678899999996 99999999854 2466777775
No 207
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.93 E-value=6.6 Score=25.47 Aligned_cols=24 Identities=33% Similarity=0.852 Sum_probs=19.5
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2en8_A 12 SHTCDECGKNFCYISALRIHQRVH 35 (46)
T ss_dssp SEECTTTCCEESSHHHHHHHHTTT
T ss_pred CeECCCcCcccCCHHHHHHHHHHh
Confidence 488999999988888888886665
No 208
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.81 E-value=4.2 Score=29.71 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=33.1
Q ss_pred CCCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCCCceee--cccccccCCC--------CCCceeeCCC
Q 014440 320 CRICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISRSTCFG--CQQSLLASGN--------KAGLCVACPK 387 (424)
Q Consensus 320 C~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~--------~~~~~~~C~~ 387 (424)
|+.|+..+.+..+|.+-. +|.- . ....|.- |.+.|..... .....|.|+.
T Consensus 12 ~~~C~~~f~~~~~L~~H~~~~H~~-~-----------------~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 73 (79)
T 2dlk_A 12 FPGCGRIFSNRQYLNHHKKYQHIH-Q-----------------KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73 (79)
T ss_dssp STTTCCEESSHHHHHHHHHHGGGS-C-----------------CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred CCCCcCccCCHHHHHHHHHHHhCC-C-----------------CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCC
Confidence 556999999999988764 3431 1 1234665 7777754310 0122478888
Q ss_pred cCccc
Q 014440 388 CKKHF 392 (424)
Q Consensus 388 C~~~f 392 (424)
|++.|
T Consensus 74 C~k~F 78 (79)
T 2dlk_A 74 SGPSS 78 (79)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87766
No 209
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.63 E-value=5.4 Score=26.01 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=19.1
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ysp_A 12 PYKCEKCGKGYNSKFNLDMHQKVH 35 (46)
T ss_dssp SEEETTTTEEESCHHHHHHHHTTS
T ss_pred CeECCCCCCccCCHHHHHHHHHhh
Confidence 488888888888888887776665
No 210
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.57 E-value=8 Score=33.21 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=30.2
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE 402 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe 402 (424)
....|.-|+.+|.-.++ ..-.|..|+..+|..|-+++..
T Consensus 54 ~~~~C~~C~~~~g~l~~---~g~~C~~C~~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGS---ASVVCEDCKKNVCTKCGVETSN 92 (134)
T ss_dssp SSSBCSSSCCBCSTTSC---CEEECTTTCCEEETTSEEECCC
T ss_pred CCccccccCCCcccccC---CCCCCCCCCcccccccCCccCC
Confidence 46789999998842211 2468999999999999999743
No 211
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=50.46 E-value=3.9 Score=29.98 Aligned_cols=47 Identities=15% Similarity=0.337 Sum_probs=34.0
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcc-cccccchhhhccCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
...|..|...+.+ ..+.=.-|++. ||.+|..-+.+.-..||.|-...
T Consensus 7 ~~~C~IC~~~~~~------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRD------GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSC------EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcCCC------eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 4579999854432 12223468997 99999988887778999997654
No 212
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=50.39 E-value=8.7 Score=28.85 Aligned_cols=34 Identities=29% Similarity=0.656 Sum_probs=26.4
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|- +-|-.|+.|+..+.....|.+-
T Consensus 3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H 50 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50 (88)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred CCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHH
Confidence 488888887664 3466899999999888888764
No 213
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.13 E-value=4 Score=26.62 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=17.9
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2eoe_A 12 PYKCNECGKVFTQNSHLANHQRIH 35 (46)
T ss_dssp SSEETTTTEECSSHHHHHHHHGGG
T ss_pred CeECCCcChhhCCHHHHHHHHHHc
Confidence 478888888888877777776555
No 214
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=49.97 E-value=9.5 Score=27.71 Aligned_cols=33 Identities=33% Similarity=0.800 Sum_probs=24.1
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLAR 335 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLar 335 (424)
.|.|+.|...|- +-|-.|+.|+..+.+...|.+
T Consensus 29 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 75 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLIT 75 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHH
T ss_pred CeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHH
Confidence 588888877664 345678888888888777754
No 215
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=49.62 E-value=11 Score=28.36 Aligned_cols=34 Identities=32% Similarity=0.711 Sum_probs=22.2
Q ss_pred eEEcCCCCccccC----------------CCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVCE----------------LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C~----------------lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|-. -|-.|+.|+..+.....|.+-
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H 84 (95)
T 2yt9_A 35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84 (95)
T ss_dssp SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHH
T ss_pred CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHH
Confidence 4777777765531 455677777777777777654
No 216
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=49.51 E-value=4.1 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=17.8
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~H 26 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLRTH 26 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHHHC
T ss_pred CccCCCcChhhCCHHHHHHHHHHc
Confidence 488999999987766666665544
No 217
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=49.47 E-value=3.9 Score=35.69 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=32.4
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc-cCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE-SLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe-~lh~CPgC~~~~~ 415 (424)
...|..|...|.. .+++ .|++.||.+|-.-.-+ .-..||.|.....
T Consensus 18 ~~~C~IC~~~~~~-------pv~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 18 KYECPICLMALRE-------AVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp GGBCTTTCSBCSS-------EEEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCChhhcC-------cEEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 4579999977753 2556 5999999999754433 3349999975443
No 218
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.47 E-value=6.6 Score=25.56 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=19.0
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2em7_A 12 PYKCEECGKGFICRRDLYTHHMVH 35 (46)
T ss_dssp SEECSSSCCEESCHHHHHHHGGGG
T ss_pred CccCCCccchhCCHHHHHHHHHHh
Confidence 488999998888888877776655
No 219
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.29 E-value=10 Score=27.25 Aligned_cols=24 Identities=38% Similarity=0.757 Sum_probs=18.5
Q ss_pred eEEcCCCCccccCCCCCCCCCCce
Q 014440 303 GYTCPRCKARVCELPTECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP~~C~~C~l~ 326 (424)
-++||.|++..=.=-..|.-||.+
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSC
T ss_pred CccCCCCCCcCCCCceecCCCCCc
Confidence 689999999932222589999977
No 220
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.98 E-value=7.8 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=19.0
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2emf_A 12 HFECTECGKAFTRKSTLSMHQKIH 35 (46)
T ss_dssp CEECSSSCCEESCHHHHHHHGGGT
T ss_pred CeECCCCCchhCCHHHHHHHHHHh
Confidence 488888888888888877776665
No 221
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=48.96 E-value=11 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.536 Sum_probs=28.7
Q ss_pred eEEcCCCCcccc------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|+..|- +-|-.|+.|+..+....+|.+-
T Consensus 74 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~~l~~H 119 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDH 119 (129)
T ss_dssp SEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHHHHH
T ss_pred CeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHHHHHHH
Confidence 799999998764 4677999999999999988764
No 222
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.92 E-value=5.7 Score=28.49 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=11.9
Q ss_pred eeeCCCcCcccccccchhhhc
Q 014440 382 CVACPKCKKHFCLECDIYIHE 402 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe 402 (424)
.|.|+.|+..|-..-++..|.
T Consensus 37 ~~~C~~C~~~f~~~~~L~~H~ 57 (70)
T 1x5w_A 37 PFKCNYCSFDTKQPSNLSKHM 57 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHH
T ss_pred CEeCCCCCCccCCHHHHHHHH
Confidence 366666666665555554443
No 223
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=48.62 E-value=6.2 Score=27.22 Aligned_cols=42 Identities=17% Similarity=0.382 Sum_probs=27.0
Q ss_pred ceeecccccccCC--------CCCCceeeCCCcCcccccccchhhh-ccCC
Q 014440 364 TCFGCQQSLLASG--------NKAGLCVACPKCKKHFCLECDIYIH-ESLH 405 (424)
Q Consensus 364 ~C~~C~~~~~~~~--------~~~~~~~~C~~C~~~fC~dCd~fih-e~lh 405 (424)
.|.-|.+.|.... -.....|.|+.|+..|-..=++..| ...|
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H 54 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHc
Confidence 4777877775431 0112358888888888777777777 3555
No 224
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=48.61 E-value=2.7 Score=23.99 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=18.6
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|+..|-..-++-.|...|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H 25 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLRIH 25 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHHHHh
Confidence 388999999998877777776544
No 225
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=48.45 E-value=6.2 Score=26.15 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=21.1
Q ss_pred eeeCCCcCcccccccchhhhccCC------CCCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH------NCPGC 410 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh------~CPgC 410 (424)
.|.|+.|++.|=..-.+-.|...| .|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (48)
T 2epr_A 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46 (48)
T ss_dssp SEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCC
T ss_pred CeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCC
Confidence 478888888888777777776555 46666
No 226
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.38 E-value=6.1 Score=25.73 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=18.2
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eml_A 12 PYECSVCGKAFSHRQSLSVHQRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHGGG
T ss_pred CeeCCCcCCccCCHHHHHHHHHHh
Confidence 488888888888877777776554
No 227
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=48.36 E-value=7 Score=34.38 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=28.9
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhh
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYI 400 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fi 400 (424)
....|.-|+.+|.-..+ ..-.|..|+..+|..|-+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~---~g~~C~~C~~~VC~~C~~~~ 103 (153)
T 2zet_C 67 NETHCARCLQPYRLLLN---SRRQCLECSLFVCKSCSHAH 103 (153)
T ss_dssp GGTBCTTTCCBGGGCSS---CCEECTTTCCEECGGGEECC
T ss_pred CCccchhhcCccccccC---CCCcCCCCCchhhccccccc
Confidence 35689999998753322 24689999999999999775
No 228
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.08 E-value=6.5 Score=25.52 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=17.7
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|+..|=..=++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eme_A 12 PYVCDYCGKAFGLSAELVRHQRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHGGG
T ss_pred CeECCCCChhhCCHHHHHHHHHhc
Confidence 488888888887777777775544
No 229
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=47.96 E-value=4.9 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=16.1
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ely_A 12 PFKCVECGKGFSRRSALNVHHKLH 35 (46)
T ss_dssp SBCCSSSCCCBSSTTHHHHHHHHH
T ss_pred CcccCccCcccCCHHHHHHHHHHc
Confidence 477777777777777766664433
No 230
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.74 E-value=6.5 Score=24.01 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.2
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|+..|-..-++-.|...|.
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elv_A 9 LYDCHICERKFKNELDRDRHMLVHG 33 (36)
T ss_dssp CEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CeECCCCCCccCCHHHHHHHHHHhc
Confidence 5999999999998888888877763
No 231
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=47.61 E-value=11 Score=28.44 Aligned_cols=34 Identities=29% Similarity=0.633 Sum_probs=25.4
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|- +-|-.|+.|+..+.....|.+-
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 83 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence 588888887664 3456888888888888777653
No 232
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=47.41 E-value=15 Score=28.49 Aligned_cols=33 Identities=27% Similarity=0.644 Sum_probs=23.5
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.| .|...|- +-|-.|+.|+..+.+...|.+-
T Consensus 10 ~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 56 (110)
T 2csh_A 10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56 (110)
T ss_dssp CEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHH
T ss_pred CEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHH
Confidence 5777 7776654 2456788888888888777664
No 233
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=47.40 E-value=7.5 Score=32.16 Aligned_cols=26 Identities=35% Similarity=0.706 Sum_probs=12.6
Q ss_pred ceeecccccccCCCCCCceeeCCCcCccc
Q 014440 364 TCFGCQQSLLASGNKAGLCVACPKCKKHF 392 (424)
Q Consensus 364 ~C~~C~~~~~~~~~~~~~~~~C~~C~~~f 392 (424)
.|..|...|..... ..-+||.|++..
T Consensus 69 ~C~~CG~~F~~~~~---kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFKAEIN---IPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCCCCSS---CCSSCSSSCCCC
T ss_pred ChhhCcCeecccCC---CCCCCcCCCCCc
Confidence 46666666621111 123566666543
No 234
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.39 E-value=6.5 Score=25.52 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=16.8
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSKLARHQRIH 35 (46)
T ss_dssp TTCCTTTCCCCSSHHHHHHHHTTT
T ss_pred CcCCCCCCCccCCHHHHHHHHHhc
Confidence 377777777777777777776555
No 235
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=47.31 E-value=5 Score=24.68 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=19.8
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++..|...|
T Consensus 11 ~~~C~~C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred CccCCCCCcccCcHHHHHHHHHHh
Confidence 589999999998888877776655
No 236
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=46.92 E-value=11 Score=28.04 Aligned_cols=33 Identities=30% Similarity=0.678 Sum_probs=23.8
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLAR 335 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLar 335 (424)
-|.|+.|...|- +-|-.|+.|+..+.+...|.+
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 80 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80 (90)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence 588888876554 345678888888887777765
No 237
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=46.92 E-value=9.2 Score=21.59 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=15.8
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H 21 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKRH 21 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHH
Confidence 45788899999988888763
No 238
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.88 E-value=4.2 Score=26.58 Aligned_cols=24 Identities=25% Similarity=0.539 Sum_probs=18.1
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytd_A 12 PYKCSECGKAFHRHTHLNEHRRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHH
T ss_pred CeECCCCCCeeCChHHHHHHHHHc
Confidence 488888888888888777775443
No 239
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=46.58 E-value=13 Score=30.80 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCCCCCCCceecCchhHHhhh--cccCCC--CCCcccCccccccccCCCCCceeecccccccCCC--------CCCcee
Q 014440 316 LPTECRICGLQLVSSPHLARSY--HHLFPI--APFDEATPSRLNDLHNISRSTCFGCQQSLLASGN--------KAGLCV 383 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLarsy--hhl~p~--~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~--------~~~~~~ 383 (424)
.+-.|+.|+..+.+...|.+-. ||.-.. ..+.. ....|..|.+.|..... .....|
T Consensus 24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~ 91 (155)
T 2rpc_A 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------------YWEECPREGKSFKAKYKLVNHIRVHTGEKPF 91 (155)
T ss_dssp CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCC------------CBTTCTTSSCCCSSHHHHHHHTHHHHCCCSE
T ss_pred cccccccCCcccCCHHHHHHHHHhhcCCCcccCCccc------------cccCCCCcccccCCHHHHHHHHHhcCCCCcc
Confidence 4557888999999999888753 354211 11110 11368889888864310 012359
Q ss_pred eCCC--cCcccccccchhhhccCC------CCCC--CCC
Q 014440 384 ACPK--CKKHFCLECDIYIHESLH------NCPG--CES 412 (424)
Q Consensus 384 ~C~~--C~~~fC~dCd~fihe~lh------~CPg--C~~ 412 (424)
.|+. |+..|=..=++..|...| .|+. |..
T Consensus 92 ~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k 130 (155)
T 2rpc_A 92 PCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDR 130 (155)
T ss_dssp ECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCC
T ss_pred cCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCC
Confidence 9988 999998888888886654 6885 853
No 240
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.43 E-value=5.1 Score=32.72 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=24.5
Q ss_pred eecCCccccCeE-EcCCCCccccCCCCCCCCCCcee
Q 014440 293 SCHKEVKIGVGY-TCPRCKARVCELPTECRICGLQL 327 (424)
Q Consensus 293 ~CH~~~~~~~Gy-~Cp~C~s~~C~lP~~C~~C~l~L 327 (424)
.|+.++...+|| .|+.|.+-|=.. ..||.|+-.|
T Consensus 37 ~Cq~eL~~~g~~~hC~~C~~~f~~~-a~CPdC~q~L 71 (101)
T 2jne_A 37 QCQHVLDQDNGHARCRSCGEFIEMK-ALCPDCHQPL 71 (101)
T ss_dssp SSCSBEEEETTEEEETTTCCEEEEE-EECTTTCSBC
T ss_pred cCCCcceecCCEEECccccchhhcc-ccCcchhhHH
Confidence 478877654455 499999976544 5799998764
No 241
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.92 E-value=11 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.746 Sum_probs=23.5
Q ss_pred CCceeecccc-cccCCCCCCceeeCCCcCcc-cccccch
Q 014440 362 RSTCFGCQQS-LLASGNKAGLCVACPKCKKH-FCLECDI 398 (424)
Q Consensus 362 ~~~C~~C~~~-~~~~~~~~~~~~~C~~C~~~-fC~dCd~ 398 (424)
...|-+|.+. +. +.||+|..|... +|.+|-.
T Consensus 11 ~~~Cd~C~~~pi~------G~RykC~~C~d~DLC~~C~~ 43 (63)
T 2e5r_A 11 PVECSYCHSESMM------GFRYRCQQCHNYQLCQDCFW 43 (63)
T ss_dssp CSCCSSSCCCSSC------SCEEEESSCSSCEECHHHHH
T ss_pred CCCCcCCCCccee------cceEEecCCCCchhHHHHHh
Confidence 3689999864 43 258999999664 9999954
No 242
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=45.72 E-value=5.9 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.1
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++..|...|.
T Consensus 7 ~~~C~~C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 7 PFVCRICLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp CEECSSSCCEESSHHHHHHHHGGGT
T ss_pred CeeCCCCCcccCCHHHHHHHHHHcC
Confidence 5999999999998888888876663
No 243
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=45.65 E-value=7.2 Score=29.59 Aligned_cols=27 Identities=26% Similarity=0.726 Sum_probs=21.2
Q ss_pred EcCCCCcccc-----CCCCCCCCCCceecCch
Q 014440 305 TCPRCKARVC-----ELPTECRICGLQLVSSP 331 (424)
Q Consensus 305 ~Cp~C~s~~C-----~lP~~C~~C~l~Lvs~p 331 (424)
.||-|..+.- ..++.|..||.+|.-|+
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 5999988765 45689999999997654
No 244
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=44.95 E-value=2.1 Score=36.02 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=0.8
Q ss_pred CCCceeecccccccCCC----------CCCceeeCCCcCcccccccchhhhccCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGN----------KAGLCVACPKCKKHFCLECDIYIHESLHNCPGCES 412 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~----------~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~ 412 (424)
....|.-|...|..+.. .+.....-+.|++.|+.+|=.---.+-..||-|-.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 108 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 108 (117)
T ss_dssp CC------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCC
Confidence 34589999988864210 00111222479999999995443344568999965
No 245
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=44.82 E-value=3.5 Score=32.34 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=20.1
Q ss_pred eeeCCCcCcccccccchhhhcc-CCC
Q 014440 382 CVACPKCKKHFCLECDIYIHES-LHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~-lh~ 406 (424)
.|.|+.|+..|-..-++..|.. .|.
T Consensus 69 ~~~C~~C~~~f~~~~~L~~H~~~~H~ 94 (107)
T 1wjp_A 69 KLTCLECMRTFKSSFSIWRHQVEVHN 94 (107)
T ss_dssp GGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred CccCccccchhCCHHHHHHHHHHHcC
Confidence 4889999999988888888874 663
No 246
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=44.71 E-value=4.7 Score=26.40 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=16.6
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2emk_A 12 PYECKECGKAFSQTTHLIQHQRVH 35 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHHHH
T ss_pred ceECCCCCchhCCHHHHHHHHHHc
Confidence 477888888877777766665443
No 247
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=44.47 E-value=12 Score=21.16 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H 21 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKTH 21 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHH
T ss_pred CccCCCCCCccCCHHHHHHH
Confidence 45788899999888888653
No 248
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.33 E-value=5 Score=26.18 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=17.0
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..=++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytk_A 12 PYKCNECGKVFTQNSHLTNHWRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHH
T ss_pred CEeCCcCCCccCCHHHHHHHHHHH
Confidence 478888888887777766664443
No 249
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.30 E-value=8.7 Score=24.94 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=18.5
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ep2_A 12 PYECSICGKSFTKKSQLHVHQQIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHTT
T ss_pred CcCCCCCCcccCCHHHHHHHHHHh
Confidence 488888888888888877776555
No 250
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=44.22 E-value=9.2 Score=28.48 Aligned_cols=25 Identities=28% Similarity=0.784 Sum_probs=19.8
Q ss_pred EEcCCCCccccCCCCCCCCCCceecCc
Q 014440 304 YTCPRCKARVCELPTECRICGLQLVSS 330 (424)
Q Consensus 304 y~Cp~C~s~~C~lP~~C~~C~l~Lvs~ 330 (424)
-.||.|+.. .|-..||.||....++
T Consensus 6 r~C~~Cg~Y--TLk~~CP~CG~~t~~a 30 (60)
T 2aus_D 6 RKCPKCGRY--TLKETCPVCGEKTKVA 30 (60)
T ss_dssp EECTTTCCE--ESSSBCTTTCSBCEES
T ss_pred eECCCCCCE--EccccCcCCCCccCCC
Confidence 479999876 4577899999987665
No 251
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.78 E-value=7 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=17.9
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2enc_A 12 PFKCEECGKGFYTNSQCYSHQRSH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHS
T ss_pred CcCCCCCCCcCCChHHHHHHHHHh
Confidence 488888888888777777775554
No 252
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=43.76 E-value=7.6 Score=31.53 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=31.4
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhh-hccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYI-HESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fi-he~lh~CPgC~~~~~ 415 (424)
...|.-|...+..+ .. ..|++.||..|=.-. ...-..||-|.....
T Consensus 23 ~~~C~IC~~~~~~p-------~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP-------VE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE-------EE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc-------EE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 34799998777532 23 479999999995433 333568999976443
No 253
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.66 E-value=9.9 Score=27.88 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=24.7
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~l 404 (424)
...|..|.. . ..|.||+|.-.||--=-..+|...
T Consensus 12 ~~~C~vC~~-~--------~kY~CPrC~~~yCSl~C~k~Hk~~ 45 (56)
T 2yqq_A 12 TVVCVICLE-K--------PKYRCPACRVPYCSVVCFRKHKEQ 45 (56)
T ss_dssp CCCCTTTCS-C--------CSEECTTTCCEESSHHHHHHHHHH
T ss_pred CCccCcCcC-C--------CeeeCCCCCCCeeCHHHHHHHHhh
Confidence 347999985 2 359999999999974335566654
No 254
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.63 E-value=3.9 Score=25.09 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=19.8
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-.+-.|...|
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 9 IFTCEYCNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHH
T ss_pred CEECCCCCceeCCHHHHHHHHHHh
Confidence 599999999998888777776555
No 255
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=43.57 E-value=30 Score=32.53 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=31.7
Q ss_pred eeCCCCCHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCC
Q 014440 144 LTDLGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 218 (424)
Q Consensus 144 lspLT~d~~~~~~~L~~~~~~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~ 218 (424)
+.|||+..... +..+.+|+++|++.++...+-..|+|=+++-+ +.+||....+.++.+.+.+
T Consensus 13 ~~plsG~~a~~------------G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D-~~~~p~~a~~~a~~li~~~ 74 (353)
T 4gnr_A 13 NFEESGSLAAY------------GTAEQKGAQLAVDEINAAGGIDGKQIEVVDKD-NKSETAEAASVTTNLVTQS 74 (353)
T ss_dssp EECCSSTTHHH------------HHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEE-CTTCHHHHHHHHHHHHHTS
T ss_pred EeCCcCchhHh------------HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEec-CCCCHHHHHHHHHHHHhhC
Confidence 46888764322 23566677777777766433334555444432 1234444344444444444
No 256
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.32 E-value=14 Score=27.14 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=13.5
Q ss_pred CCCCCCCceecCchhHHhh
Q 014440 318 TECRICGLQLVSSPHLARS 336 (424)
Q Consensus 318 ~~C~~C~l~Lvs~phLars 336 (424)
-.|+.|+..+....+|.+-
T Consensus 16 ~~C~~C~~~f~~~~~l~~H 34 (86)
T 1x6h_A 16 YACSHCDKTFRQKQLLDMH 34 (86)
T ss_dssp EECSSSSCEESSHHHHHHH
T ss_pred CcCCCCCCccCCHHHHHHH
Confidence 3456677888888888765
No 257
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=43.26 E-value=7.2 Score=39.42 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc-cCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE-SLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe-~lh~CPgC~~~~~ 415 (424)
...|.-|...+.. -....|++.||.+|-.-.-+ .-..||-|-....
T Consensus 332 ~~~C~ICle~~~~--------pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKD--------VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCC--------EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCC--------eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 3589999866642 13457999999999754444 5679999976443
No 258
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.13 E-value=10 Score=24.51 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=19.5
Q ss_pred eeeCCCcCcccccccchhhhcc-CC
Q 014440 382 CVACPKCKKHFCLECDIYIHES-LH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~-lh 405 (424)
.|.|+.|++.|=..-++..|.. .|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~~H 36 (47)
T 2epx_A 12 PYECIECGKAFIQNTSLIRHWRYYH 36 (47)
T ss_dssp SBCCSSSCCCBSSHHHHHHHHTTTT
T ss_pred CEECCccCchhCChHHHHHHhHhhc
Confidence 4889999999988888887766 55
No 259
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.09 E-value=6.1 Score=29.29 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=14.0
Q ss_pred CCccccCeEEcCCCCcccc
Q 014440 296 KEVKIGVGYTCPRCKARVC 314 (424)
Q Consensus 296 ~~~~~~~Gy~Cp~C~s~~C 314 (424)
..+...+.|.||+|+..||
T Consensus 23 ~~~~~~~~y~C~~C~~~FC 41 (59)
T 1z60_A 23 GELKDQHVYVCAVCQNVFC 41 (59)
T ss_dssp EECTTSEEECCTTTTCCBC
T ss_pred cccCCCccEECCccCcCcc
Confidence 3343442499999999999
No 260
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.89 E-value=7.3 Score=25.34 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=19.0
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2ytj_A 12 PYICAECGKAFTIRSNLIKHQKIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHT
T ss_pred CeECCCCChhhCCHHHHHHHHHHc
Confidence 488999999988888887776554
No 261
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.77 E-value=3.8 Score=29.22 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=24.3
Q ss_pred eEEcCCCCcccc-------CCCCCCCCCCceecCchhHHh
Q 014440 303 GYTCPRCKARVC-------ELPTECRICGLQLVSSPHLAR 335 (424)
Q Consensus 303 Gy~Cp~C~s~~C-------~lP~~C~~C~l~Lvs~phLar 335 (424)
-|.|++|+..|- +-|-.|+.|+..+.....|.+
T Consensus 18 ~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCcCCCCCCCCCChhhcCHHHHHH
Confidence 699999987665 456788888887776666543
No 262
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=41.61 E-value=13 Score=27.64 Aligned_cols=33 Identities=24% Similarity=0.638 Sum_probs=23.3
Q ss_pred CCceeecccc--cccCCCCCCceeeCCCcCccccc-ccchhhhc
Q 014440 362 RSTCFGCQQS--LLASGNKAGLCVACPKCKKHFCL-ECDIYIHE 402 (424)
Q Consensus 362 ~~~C~~C~~~--~~~~~~~~~~~~~C~~C~~~fC~-dCd~fihe 402 (424)
...|..|... .+ ..|.||+|+-.||- .|-. +|.
T Consensus 11 ~~~C~vC~~~~~~~-------akY~CPrC~~rYCSl~C~k-~Hk 46 (59)
T 1x4s_A 11 AGPCGFCPAGEVQP-------ARYTCPRCNAPYCSLRCYR-THG 46 (59)
T ss_dssp CEEECSSCTTCCEE-------ECEECTTTCCEESSHHHHH-HHC
T ss_pred CCcCcCCCCCcCCC-------ccccCcCCCCCccChHHHH-HHh
Confidence 4589999741 21 35999999999996 5544 453
No 263
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.29 E-value=6.8 Score=28.30 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=23.0
Q ss_pred CceeecccccccCCC--------CCCceeeCCCcCcccccccchhhhccC
Q 014440 363 STCFGCQQSLLASGN--------KAGLCVACPKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 363 ~~C~~C~~~~~~~~~--------~~~~~~~C~~C~~~fC~dCd~fihe~l 404 (424)
..|.-|.+.|..... .....|.|+.|+..|-..-++-.|...
T Consensus 15 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~ 64 (72)
T 1x6e_A 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64 (72)
T ss_dssp EECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence 357777666643210 012247777777777666555555443
No 264
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.17 E-value=9.5 Score=27.14 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=11.0
Q ss_pred CceeeCCCcCccc
Q 014440 380 GLCVACPKCKKHF 392 (424)
Q Consensus 380 ~~~~~C~~C~~~f 392 (424)
+.+|.||+|+..|
T Consensus 10 ~~~~~CPrCn~~f 22 (49)
T 2e72_A 10 GGRKICPRCNAQF 22 (49)
T ss_dssp SSCCCCTTTCCCC
T ss_pred CCceeCCcccccc
Confidence 4579999999887
No 265
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.15 E-value=14 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=19.3
Q ss_pred eEEcCCCCcccc--CCCC-CCCCCCce
Q 014440 303 GYTCPRCKARVC--ELPT-ECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C--~lP~-~C~~C~l~ 326 (424)
-|.|..|+..|= +.+. .||.||-.
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 789999998765 4667 89999865
No 266
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=41.07 E-value=9.6 Score=28.60 Aligned_cols=42 Identities=21% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcc-cccccchhhhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
...|.-|...+..+ .+ -.|++. ||.+|-.- +..||-|.....
T Consensus 24 ~~~C~iC~~~~~~~------~~--~pCgH~~~C~~C~~~----~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI------VF--VPCGHLVTCKQCAEA----VDKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE------EE--ETTCCBCCCHHHHTT----CSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCE------EE--cCCCChhHHHHhhhc----CccCCCcCcCcc
Confidence 35799998665421 22 269999 99999553 389999976443
No 267
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=40.71 E-value=16 Score=29.31 Aligned_cols=48 Identities=4% Similarity=-0.260 Sum_probs=32.2
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQS 416 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~~ 416 (424)
..-.|.-|...|.++ ..- .|++.||..|=.-.-+.-..||.|......
T Consensus 28 ~~~~CpI~~~~m~dP-------V~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP-------VRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSE-------EEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCC-------eEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 355899998777543 222 499999999953322345789999764443
No 268
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=40.68 E-value=16 Score=26.17 Aligned_cols=34 Identities=38% Similarity=0.861 Sum_probs=26.0
Q ss_pred eEEcC--CCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCP--RCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp--~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+ .|+..|- +-|-.|+.|+..+.....|.+-
T Consensus 19 ~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 68 (73)
T 1f2i_G 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68 (73)
T ss_dssp CEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred ccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHH
Confidence 68897 5887664 3466899999999888888663
No 269
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.32 E-value=12 Score=26.59 Aligned_cols=34 Identities=29% Similarity=0.744 Sum_probs=26.3
Q ss_pred eEEcCCCCccc-----------c-CCCCCCC-CCCceecCchhHHhh
Q 014440 303 GYTCPRCKARV-----------C-ELPTECR-ICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~-----------C-~lP~~C~-~C~l~Lvs~phLars 336 (424)
-|.|+.|+..| + +-|-.|+ .||..+...-+|.+-
T Consensus 10 ~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H 56 (66)
T 2eod_A 10 TQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGH 56 (66)
T ss_dssp EEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHH
T ss_pred CeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccHHHHHHH
Confidence 68899997654 2 4567899 999999888888764
No 270
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=39.61 E-value=8.9 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.9
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-.+..|...|.
T Consensus 6 ~~~C~~C~k~f~~~~~L~~H~~~H~ 30 (39)
T 1njq_A 6 SYTCSFCKREFRSAQALGGHMNVHR 30 (39)
T ss_dssp SEECTTTCCEESSHHHHHHHHHTTC
T ss_pred ceECCCCCcccCCHHHHHHHHHHcC
Confidence 4999999999999888888988775
No 271
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=39.61 E-value=39 Score=26.72 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEE-cCCC-C-CCccCHHHHHHHHHhCCcEEEEEEecc
Q 014440 169 SIQNALDLVHGLLNQIPSYGHREVLILY-SALS-T-CDPGDIMETIQKCKESKIRCSVIGLSA 228 (424)
Q Consensus 169 sL~~AL~~Al~~L~~~p~~~~reILvI~-ss~~-t-~dp~~i~~~i~~akk~~IrV~vIgLg~ 228 (424)
.+.++|..|.++++..| .-+|.|++ |..- . ....++.+.++.+++.||++.+|+-..
T Consensus 12 ~~~~al~~~~n~~~~~~---~~~v~vv~~g~gv~~~~~~~~~~~~i~~l~~~gV~~~~C~~s~ 71 (108)
T 2pd2_A 12 KVPQALRSVINLYNDIK---DAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNILIVGCENSI 71 (108)
T ss_dssp GHHHHHHHHHHHHHHST---TCEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHhhCC---CCeEEEEEcChHHHHHHcCchHHHHHHHHHHCcCEEEecHHHH
Confidence 56678888888887643 33555555 4321 1 112357788999999999999998763
No 272
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=39.46 E-value=11 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=19.2
Q ss_pred eeeCCCcCcccccccchhhhccC------CCCCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESL------HNCPGC 410 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~l------h~CPgC 410 (424)
.|.|+.|++.|-..-++-.|... ..||.|
T Consensus 10 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c 44 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44 (45)
T ss_dssp SSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred CCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence 47788888877777776666443 356665
No 273
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=38.97 E-value=10 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.648 Sum_probs=23.3
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcc-cccccch
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDI 398 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~ 398 (424)
...|-+|.+.+ ..||.|..|... +|..|-.
T Consensus 6 ~~~Cd~C~~~i-------g~R~~C~~C~dyDLC~~C~~ 36 (52)
T 1tot_A 6 VYTCNECKHHV-------ETRWHCTVCEDYDLCINCYN 36 (52)
T ss_dssp CEEETTTTEEE-------SSEEEESSSSSCEECHHHHH
T ss_pred EEECCCCCCCC-------cceEEcCCCCCchhHHHHHh
Confidence 45799999763 148999999775 8999954
No 274
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.68 E-value=11 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.8
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++..|...|.
T Consensus 11 ~~~C~~C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2eos_A 11 PYPCEICGTRFRHLQTLKSHLRIHT 35 (42)
T ss_dssp CBCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred CEECCCCCCccCCHHHHHHHHHhcC
Confidence 5899999999999999988887764
No 275
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=38.47 E-value=15 Score=22.12 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=16.1
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.||..+....+|.+-
T Consensus 2 p~~C~~C~k~F~~~~~L~~H 21 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSKH 21 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHHH
T ss_pred cccCCCCCchhCCHHHHHHH
Confidence 45788899999998888764
No 276
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.39 E-value=12 Score=27.32 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=30.7
Q ss_pred CCceeecccccccCC--------CCCCceeeCCCcCcccccccchhhhccCCC
Q 014440 362 RSTCFGCQQSLLASG--------NKAGLCVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~--------~~~~~~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
...|.-|.+.|.... -.....|.|+.|+..|-..-++..|...|.
T Consensus 18 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~ 70 (77)
T 2cot_A 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70 (77)
T ss_dssp SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSC
T ss_pred CEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhC
Confidence 446888888776431 011235889999888888888888877663
No 277
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.11 E-value=15 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=16.6
Q ss_pred eeeCCCcCcccccccchhhhcc
Q 014440 382 CVACPKCKKHFCLECDIYIHES 403 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~ 403 (424)
.|.|+.|++.|=..-++-.|..
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~ 33 (46)
T 2emh_A 12 PYICTVCGKAFTDRSNLIKHQK 33 (46)
T ss_dssp SEECTTTCCEESSHHHHHHHHH
T ss_pred CcCCCCCCchhCCHHHHHHHHH
Confidence 4888888888887777776643
No 278
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.04 E-value=10 Score=29.61 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=30.9
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccc-hhhh----cc---CCCCCC--CCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECD-IYIH----ES---LHNCPG--CESL 413 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd-~fih----e~---lh~CPg--C~~~ 413 (424)
...|.-|.-.++.+ ..+.-..|++.||.+|= .|+. |. --.||. |...
T Consensus 5 ~~~C~IC~~~~~~~-----~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVE-----QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGG-----GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccc-----cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 44799998666532 23555679999999994 2332 22 237999 8754
No 279
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.80 E-value=16 Score=23.54 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=16.4
Q ss_pred eeeCCCcCcccccccchhhhcc
Q 014440 382 CVACPKCKKHFCLECDIYIHES 403 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~ 403 (424)
.|.|+.|++.|=..-++-.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2emp_A 12 PYMCNECGKAFSVYSSLTTHQV 33 (46)
T ss_dssp SEECSSSCCEESCHHHHHHHHH
T ss_pred CeECCCCCchhCCHHHHHHHHH
Confidence 4888888888887777766643
No 280
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.54 E-value=16 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.3
Q ss_pred eeeCCCcCcccccccchhhhcc
Q 014440 382 CVACPKCKKHFCLECDIYIHES 403 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~ 403 (424)
.|.|+.|++.|=..-++..|..
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~ 33 (46)
T 2eoo_A 12 PYGCNECGKNFGRHSHLIEHLK 33 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHH
T ss_pred CEEccccCcccCCHHHHHHHHH
Confidence 4788888888877777766643
No 281
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=37.38 E-value=26 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=21.3
Q ss_pred eEEcCCCCccccCCCCCCCCCCcee
Q 014440 303 GYTCPRCKARVCELPTECRICGLQL 327 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP~~C~~C~l~L 327 (424)
.+.||+|-.+.=..-..|.+|+..+
T Consensus 6 ~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 6 MWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CEECSSSCCEECSSCSSCSSSCCCC
T ss_pred cccCCcccccCCCCCCccCCcCCCC
Confidence 7899999988877778999999764
No 282
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.33 E-value=16 Score=23.58 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=17.4
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++..|...|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H 35 (46)
T 2emy_A 12 PYECHECGKAFSRKYQLISHQRTH 35 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHH
T ss_pred CcCCCCCCcccCcHHHHHHHHHHc
Confidence 488888888888777777765443
No 283
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.32 E-value=18 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.454 Sum_probs=16.5
Q ss_pred eeeCCCcCcccccccchhhhccC
Q 014440 382 CVACPKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~l 404 (424)
.|.|+.|++.|=..-++-.|...
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2yu8_A 12 PYKCNECGKVFTQNSHLARHRRV 34 (46)
T ss_dssp SEECSSSCCEESSSHHHHHHTHH
T ss_pred CeECCcCCchhCCHHHHHHHHHh
Confidence 47888888888777777666443
No 284
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.31 E-value=12 Score=28.21 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=35.9
Q ss_pred CCCCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCCCceeecccccccCCCCCCceeeCCCcCccccccc
Q 014440 319 ECRICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLEC 396 (424)
Q Consensus 319 ~C~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dC 396 (424)
.|+.|+..+....+|.+-. ||.- - ....++.|. .|.|+.|++.|=..-
T Consensus 27 ~C~~C~k~f~~~~~L~~H~~~~H~~-~-----------------~~~~~~~c~------------~~~C~~C~k~f~~~~ 76 (95)
T 2ej4_A 27 PKKSCDRTFSTMHELVTHVTMEHVG-G-----------------PEQNNHVCY------------WEECPREGKSFKAKY 76 (95)
T ss_dssp SCCCCCCCCSSHHHHHHHHHHTTTC-C-----------------TTCSCCCCC------------CTTCSSTTCCCSSHH
T ss_pred cccccccccCCHHHHHHHHHHhccC-C-----------------CCCCcccee------------ccCCCCCCcccCCHH
Confidence 5889999999999998753 3431 0 011233342 266888888887777
Q ss_pred chhhhccCC
Q 014440 397 DIYIHESLH 405 (424)
Q Consensus 397 d~fihe~lh 405 (424)
.+-.|...|
T Consensus 77 ~L~~H~~~H 85 (95)
T 2ej4_A 77 KLVNHIRVH 85 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 766664433
No 285
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=37.26 E-value=12 Score=27.42 Aligned_cols=48 Identities=23% Similarity=0.460 Sum_probs=34.2
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcc-cccccchhhhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
...|..|...+.+ ..+.---|++. ||.+|..-+.+.-..||.|-....
T Consensus 8 ~~~C~IC~~~~~~------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKN------GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSC------EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCC------EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4579999855432 12322259998 899999888887788999976543
No 286
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.02 E-value=12 Score=28.08 Aligned_cols=27 Identities=30% Similarity=0.660 Sum_probs=20.7
Q ss_pred EcCCCCcccc-----CCCCCCCCCCceecCch
Q 014440 305 TCPRCKARVC-----ELPTECRICGLQLVSSP 331 (424)
Q Consensus 305 ~Cp~C~s~~C-----~lP~~C~~C~l~Lvs~p 331 (424)
.||-|..+.- ..++.|..||.+|.-+.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 5999988654 35679999999987553
No 287
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.94 E-value=16 Score=23.50 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=17.0
Q ss_pred eeeCCCcCcccccccchhhhccC
Q 014440 382 CVACPKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~l 404 (424)
.|.|+.|++.|=..-++-.|...
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2yso_A 12 SHQCRECGEIFFQYVSLIEHQVL 34 (46)
T ss_dssp CEECTTTCCEESSHHHHHHHHHH
T ss_pred CEEccccChhhCCHHHHHHHHHH
Confidence 48888888888877777766443
No 288
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.87 E-value=17 Score=23.48 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=20.0
Q ss_pred eeeCCCcCcccccccchhhhccC------CCCCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESL------HNCPGC 410 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~l------h~CPgC 410 (424)
.|.|+.|++.|=..-++-.|... +.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em8_A 12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred CeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 48888888888877776666433 456655
No 289
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=36.82 E-value=17 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.542 Sum_probs=29.3
Q ss_pred eEEcCCCCcccc--------------CCCCCCCCCCceecCchhHHhh
Q 014440 303 GYTCPRCKARVC--------------ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 303 Gy~Cp~C~s~~C--------------~lP~~C~~C~l~Lvs~phLars 336 (424)
-|.|+.|...|- +-|-.|+.||..+...-.|.+-
T Consensus 50 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H 97 (133)
T 2lt7_A 50 KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97 (133)
T ss_dssp CEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHH
T ss_pred CeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHH
Confidence 699999998776 3578999999999999999765
No 290
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.82 E-value=12 Score=22.66 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=14.9
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H 28 (36)
T 2elq_A 9 PFKCSLCEYATRSKSNLKAH 28 (36)
T ss_dssp SEECSSSSCEESCHHHHHHH
T ss_pred CccCCCCCchhCCHHHHHHH
Confidence 44677788888888888654
No 291
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.69 E-value=15 Score=23.69 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=17.1
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRLNRHSMVH 35 (46)
T ss_dssp SCCCSSSCCCCSSHHHHHHHHHHT
T ss_pred CcCCCcCCchhCCHHHHHHHHHHc
Confidence 477888888887777777665444
No 292
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=36.66 E-value=7.7 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=19.2
Q ss_pred eeCC--CcCcccccccchhhhccCC
Q 014440 383 VACP--KCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 383 ~~C~--~C~~~fC~dCd~fihe~lh 405 (424)
|.|+ .|++.|-..-.+-.|...|
T Consensus 3 ~~C~~~~C~k~f~~~~~l~~H~~~H 27 (29)
T 2ab3_A 3 YVCHFENCGRSFNDRRKLNRHKKIH 27 (29)
T ss_dssp EEECSTTTCEEESSHHHHHHHHGGG
T ss_pred CCCcCCcCcCccCCHHHHHHHHHHh
Confidence 7899 9999998888888887665
No 293
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=36.59 E-value=51 Score=30.70 Aligned_cols=56 Identities=25% Similarity=0.435 Sum_probs=39.9
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch
Q 014440 164 CSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE 229 (424)
Q Consensus 164 ~~G~tsL~~AL~~Al~~L~~~p~~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e 229 (424)
..|+-.|..|+ ....+.| .-.+|||-+|+- .|.|.++++.+|++||+|-.+-+...
T Consensus 127 ~vge~~l~~av----~av~~lp---r~~~lvlags~m---gg~i~~~v~~~~~~~i~vi~l~m~gs 182 (223)
T 1y7p_A 127 VVGEEEIAEAV----KAVSRLH---RAEVLVLAGGIM---GGKITEEVKKLRKSGIRVISLSMFGS 182 (223)
T ss_dssp CCSHHHHHHHH----HHGGGST---TEEEEEEESSBC---CTHHHHHHHHHGGGTCEEEEESCBSS
T ss_pred ecCHHHHHHHH----HHHhhcc---ccceeeEecccc---cchHHHHHHHHHHCCCeEEEecCCCC
Confidence 35766665554 4555554 236899998875 37899999999999998876666543
No 294
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.40 E-value=6.1 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=19.2
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|+..|-..-.+-.|...|
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elt_A 9 PYKCPQCSYASAIKANLNVHLRKH 32 (36)
T ss_dssp SEECSSSSCEESSHHHHHHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHHHHHHc
Confidence 599999999998887777776544
No 295
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.40 E-value=12 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=21.4
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 11 ~~~C~~C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2ytb_A 11 PYRCDQCGKAFSQKGSLIVHIRVHT 35 (42)
T ss_dssp SBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred CeeCCCccchhCCHHHHHHHHHHhC
Confidence 5899999999999888888877763
No 296
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.37 E-value=13 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=22.1
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enh_A 12 PYECDVCRKAFSHHASLTQHQRVHS 36 (46)
T ss_dssp SCBCTTTCCBCSSSHHHHHHGGGSC
T ss_pred CcCCCCcCchhCCHHHHHHHHHHhC
Confidence 5899999999999999999987774
No 297
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.35 E-value=12 Score=24.26 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=21.9
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enf_A 12 PYKCNECGKVFTQNSHLVRHRGIHT 36 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHHTTTT
T ss_pred CeECCCCCcccCCHHHHHHHHHhhC
Confidence 5899999999999999999987774
No 298
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=36.18 E-value=25 Score=27.69 Aligned_cols=77 Identities=22% Similarity=0.525 Sum_probs=50.8
Q ss_pred CCCCC--CCCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCceeecccccccCC--------CCCCceeeC
Q 014440 317 PTECR--ICGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASG--------NKAGLCVAC 385 (424)
Q Consensus 317 P~~C~--~C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~--------~~~~~~~~C 385 (424)
|-.|+ .|+..+.+...|.+-.. | .. ....|..|.+.|.... -.....|.|
T Consensus 5 ~~~C~~~~C~~~f~~~~~l~~H~~~h--~~-----------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C 65 (124)
T 1ubd_C 5 TIACPHKGCTKMFRDNSAMRKHLHTH--GP-----------------RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65 (124)
T ss_dssp CEECCSTTCCCEESSHHHHHHHHGGG--SC-----------------CCEECTTTCCEESSHHHHHHHGGGTSCCCCEEC
T ss_pred cccCCCCCCcCccCCHHHHHHHHHHc--CC-----------------CCeECCCCCchhCCHHHHHHHHHHcCCCCCeeC
Confidence 34687 89999999988877532 2 11 1235888888886431 012235899
Q ss_pred CC--cCcccccccchhhhcc------CCCCC--CCCC
Q 014440 386 PK--CKKHFCLECDIYIHES------LHNCP--GCES 412 (424)
Q Consensus 386 ~~--C~~~fC~dCd~fihe~------lh~CP--gC~~ 412 (424)
+. |+..|=..=++-.|.. ...|| .|..
T Consensus 66 ~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~ 102 (124)
T 1ubd_C 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 102 (124)
T ss_dssp CSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCC
T ss_pred CCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCC
Confidence 74 9999887777766643 45886 5864
No 299
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=35.98 E-value=12 Score=32.52 Aligned_cols=26 Identities=27% Similarity=0.692 Sum_probs=14.6
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcc
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKH 391 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~ 391 (424)
...|.+|...|.... ..-.||.|++.
T Consensus 132 ~y~C~~Cg~~~~~~~----~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLP----PGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSCC----GGGBCTTTCCB
T ss_pred EEECCCCCCcccCCC----CCCcCCCCCCc
Confidence 346888877775221 12357777753
No 300
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.71 E-value=22 Score=26.61 Aligned_cols=38 Identities=29% Similarity=0.808 Sum_probs=27.3
Q ss_pred CCceee--cccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCC
Q 014440 362 RSTCFG--CQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 362 ~~~C~~--C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
...|.. |.+.- -..|.|..|++.||.+ -=+..-|.|++
T Consensus 12 ~~~Cs~~~Ck~~~-------ll~f~C~~C~~~FC~~---HR~~e~H~C~~ 51 (63)
T 1x4v_A 12 TNKCERAGCRQRE-------MMKLTCERCSRNFCIK---HRHPLDHDCSG 51 (63)
T ss_dssp CCCCCSTTCCCCC-------SSCCBCSSSCCBCCHH---HHSTTSSCCCS
T ss_pred CCCCCccCCCCCC-------ccceECCCCCcccCcc---cCCccCCcCCC
Confidence 457888 97431 1258999999999985 33456799986
No 301
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.61 E-value=13 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.0
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++..|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yts_A 12 PYICNECGKSFIQKSHLNRHRRIHT 36 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHGGGTS
T ss_pred CEECCCCChhhCChHHHHHHHHhcC
Confidence 5999999999999999999987763
No 302
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.52 E-value=8.9 Score=30.26 Aligned_cols=44 Identities=18% Similarity=0.353 Sum_probs=30.6
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccch-hhhcc-----CCCCCC--CCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI-YIHES-----LHNCPG--CES 412 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~-fihe~-----lh~CPg--C~~ 412 (424)
.-.|.-|+..|.++ ..-+.|++.||..|=. ++.+. -..||- |..
T Consensus 7 ~~~CPI~~~~~~dP-------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 7 GFTCPITKEEMKKP-------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp CCBCTTTCSBCSSE-------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred EeECcCcCchhcCC-------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 45799998777643 3455799999999953 33322 458999 863
No 303
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.43 E-value=18 Score=23.28 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=17.4
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++..|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2emm_A 12 PHKCNECGKSFIQSAHLIQHQRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHH
T ss_pred CeeCCCCChhhCCHHHHHHHHHHh
Confidence 488888888888777777664433
No 304
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.32 E-value=14 Score=23.21 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=21.7
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++-.|...|.
T Consensus 10 ~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (41)
T 2ept_A 10 VYECQECGKSFRQKGSLTLHERIHT 34 (41)
T ss_dssp CEECSSSCCEESSHHHHHHHGGGCC
T ss_pred CeECCCCCCCcCCHHHHHHHHHHhC
Confidence 5999999999999888888887774
No 305
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.30 E-value=13 Score=28.87 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=26.2
Q ss_pred CceeecccccccCC--------CCCCceeeCCCcCcccccccchhhh-ccCC
Q 014440 363 STCFGCQQSLLASG--------NKAGLCVACPKCKKHFCLECDIYIH-ESLH 405 (424)
Q Consensus 363 ~~C~~C~~~~~~~~--------~~~~~~~~C~~C~~~fC~dCd~fih-e~lh 405 (424)
..|.-|.+.|.... -.....|.|+.|++.|=..-.+-.| ...|
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H 80 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence 35777777776431 0112357888888887777666666 3444
No 306
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.57 E-value=14 Score=21.99 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=14.6
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 7 ~~~C~~C~k~f~~~~~L~~H 26 (35)
T 2elx_A 7 GYVCALCLKKFVSSIRLRSH 26 (35)
T ss_dssp SEECSSSCCEESSHHHHHHH
T ss_pred CeECCCCcchhCCHHHHHHH
Confidence 34567788888888888653
No 307
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.45 E-value=24 Score=29.17 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=19.5
Q ss_pred ceeeCCCcCcccccccchhhhccCC-CCCCCCCC
Q 014440 381 LCVACPKCKKHFCLECDIYIHESLH-NCPGCESL 413 (424)
Q Consensus 381 ~~~~C~~C~~~fC~dCd~fihe~lh-~CPgC~~~ 413 (424)
..|+|..|++.|=.+ +-.- .||.|.+.
T Consensus 72 ~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 468899999887663 3345 69999764
No 308
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=34.27 E-value=16 Score=28.29 Aligned_cols=47 Identities=4% Similarity=-0.236 Sum_probs=31.8
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
..-.|.-|...|.++ ..- .|++.||..|=.-.-+.-..||.|.....
T Consensus 13 ~~~~CpI~~~~m~dP-------V~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP-------VRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSSE-------EEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchhcCC-------eEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 355799998777543 223 49999999995333334578999976433
No 309
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.17 E-value=20 Score=28.52 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEcCCCCcccc-----CCCCCCCCCCceecCc
Q 014440 304 YTCPRCKARVC-----ELPTECRICGLQLVSS 330 (424)
Q Consensus 304 y~Cp~C~s~~C-----~lP~~C~~C~l~Lvs~ 330 (424)
-.||-|..+.- ..++.|..||++|.-+
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 36999998765 4568999999998654
No 310
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=34.05 E-value=43 Score=26.80 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCcEEEEEE-cCC-CC-CCccCHHHHHHHHHhCCcEEEEEEec
Q 014440 169 SIQNALDLVHGLLNQIPSYGHREVLILY-SAL-ST-CDPGDIMETIQKCKESKIRCSVIGLS 227 (424)
Q Consensus 169 sL~~AL~~Al~~L~~~p~~~~reILvI~-ss~-~t-~dp~~i~~~i~~akk~~IrV~vIgLg 227 (424)
.+..+|..|.++++..| .-+|.|++ |+. .. .+..++.+.++.+++.||++.+|+-.
T Consensus 17 ~~~~~L~~a~n~~~~~~---~~~i~vv~~G~av~~~~~~~~~~~~i~~L~~~gV~~~~C~~~ 75 (113)
T 1l1s_A 17 RVLLLISNVRNLMADLE---SVRIEVVAYSMGVNVLRRDSEYSGDVSELTGQGVRFCACSNT 75 (113)
T ss_dssp HHHHHHHHHHHHHHHCS---SEEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEHHH
T ss_pred HHHHHHHHHHHHHHhCC---CCcEEEEEechHHHHHHcCChHHHHHHHHHHCCCEEEecHHH
Confidence 56678888888887653 23555554 432 11 12235678899999999999999875
No 311
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=33.97 E-value=29 Score=34.72 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=34.6
Q ss_pred CCCceeecccccccCCCCCCceeeCC--CcCcccccccchhhhcc-----------CCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACP--KCKKHFCLECDIYIHES-----------LHNCPGCES 412 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~--~C~~~fC~dCd~fihe~-----------lh~CPgC~~ 412 (424)
+...|.-|...+...+ ......|. .|++.|=..|=.---.+ ...||.|..
T Consensus 307 ~~~ECaICys~~l~~g--~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 307 EELRCNICFAYRLDGG--EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp SCCSCSSSCCSSCTTC--CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred CCccCcccceeecCCC--CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 5668999987776422 12346687 89999999997433233 257999976
No 312
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=33.91 E-value=6.4 Score=33.72 Aligned_cols=43 Identities=21% Similarity=0.615 Sum_probs=30.2
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchh-hhccCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIY-IHESLHNCPGCES 412 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~f-ihe~lh~CPgC~~ 412 (424)
...|.-|+..|..+ ++ ..|++.||..|=.- +...-..||-|..
T Consensus 31 ~~~C~IC~~~~~~p-------v~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 74 (141)
T 3knv_A 31 KYLCSACRNVLRRP-------FQ-AQCGHRYCSFCLASILSSGPQNCAACVH 74 (141)
T ss_dssp GGBCTTTCSBCSSE-------EE-CTTSCEEEHHHHHHHGGGSCEECHHHHH
T ss_pred CcCCCCCChhhcCc-------EE-CCCCCccCHHHHHHHHhcCCCCCCCCCC
Confidence 45799999777532 34 37999999999543 3333348999964
No 313
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.87 E-value=16 Score=23.60 Aligned_cols=25 Identities=36% Similarity=0.780 Sum_probs=21.4
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoy_A 12 CFKCNKCEKTFSCSKYLTQHERIHT 36 (46)
T ss_dssp CEECSSSCCEESSSHHHHHHHTTCC
T ss_pred CEECcCCCCcCCCHHHHHHHHHHcC
Confidence 5999999999999888888876663
No 314
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=33.84 E-value=12 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.2
Q ss_pred eeeCCCcCcccccccchhhhcc-CCC
Q 014440 382 CVACPKCKKHFCLECDIYIHES-LHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~-lh~ 406 (424)
.|.|+.|++.|-..-++-.|.. .|.
T Consensus 7 p~~C~~C~k~F~~~~~L~~H~~~~H~ 32 (48)
T 3iuf_A 7 PYACDICGKRYKNRPGLSYHYAHSHL 32 (48)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred CEECCCcCcccCCHHHHHHHhhhhcC
Confidence 5999999999999999999987 774
No 315
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.73 E-value=18 Score=23.28 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=16.2
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2eq4_A 12 LYNCKECGKSFSRAPCLLKHERLH 35 (46)
T ss_dssp CCCBTTTTBCCSCHHHHHHHHHHC
T ss_pred CeECCCCCCccCchHHHHHHHHhc
Confidence 477777777777777766665443
No 316
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.50 E-value=9.2 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=18.4
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|=..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (46)
T 2em2_A 12 PFKCKECGKAFRQNIHLASHLRIH 35 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHH
T ss_pred CEECCcCCchhCCHHHHHHHHHHh
Confidence 488999998888887777775544
No 317
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.49 E-value=13 Score=23.97 Aligned_cols=25 Identities=28% Similarity=0.688 Sum_probs=21.9
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2emg_A 12 PFICSECGKVFTHKTNLIIHQKIHT 36 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHHTTTS
T ss_pred CEECCccCcccCCHHHHHHHHHHhC
Confidence 5899999999999999999987774
No 318
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=33.49 E-value=14 Score=30.05 Aligned_cols=51 Identities=20% Similarity=0.480 Sum_probs=29.3
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGCESL 413 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC~~~ 413 (424)
...|.-|...|..+... .....-..|++.||.+|=.-.-+.-..||.|...
T Consensus 7 ~~~C~IC~~~~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 57 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQN-GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 57 (133)
T ss_dssp SCBCTTTCCBHHHHHHT-TCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCB
T ss_pred CCCCcccChhhhCcccc-ccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCc
Confidence 44688887666432000 0012344688888888865444455688888653
No 319
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.19 E-value=19 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=15.5
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~H 28 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKSH 28 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHHH
Confidence 355788888888888887653
No 320
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.14 E-value=20 Score=26.04 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCCCCCCCCceecCchhHHhhh--cccCCCCCCcccCccccccccCCCCCceeecccccccCCCCCCceeeCCCcCccc
Q 014440 315 ELPTECRICGLQLVSSPHLARSY--HHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHF 392 (424)
Q Consensus 315 ~lP~~C~~C~l~Lvs~phLarsy--hhl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~f 392 (424)
+-|-.|+.|+..+.....|.+-. +|.-. ...|.|+.|+..|
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~-------------------------------------~~~~~C~~C~~~f 55 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMKMHILQKHTEN-------------------------------------VAKFHCPHCDTVI 55 (77)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHSSSS-------------------------------------CSSEECSSSSCEE
T ss_pred CCCeECCCcCchhCCHHHHHHHHHHhcCCC-------------------------------------CCccCCCCCCCcc
Confidence 45678999999999999998763 34210 0137788888888
Q ss_pred ccccchhhhccC
Q 014440 393 CLECDIYIHESL 404 (424)
Q Consensus 393 C~dCd~fihe~l 404 (424)
-..-++..|...
T Consensus 56 ~~~~~L~~H~~~ 67 (77)
T 2ct1_A 56 ARKSDLGVHLRK 67 (77)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777777654
No 321
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.12 E-value=16 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=15.5
Q ss_pred eeeCCCcCcccccccchhhhcc
Q 014440 382 CVACPKCKKHFCLECDIYIHES 403 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~ 403 (424)
.|.|+.|++.|=..-++-.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2en6_A 12 PYGCNECGKTFSQKSILSAHQR 33 (46)
T ss_dssp CEEETTTTEEESSHHHHHHHHH
T ss_pred CeECCCCCcccCchHHHHHHHH
Confidence 4778888888777777666643
No 322
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.00 E-value=12 Score=24.17 Aligned_cols=25 Identities=24% Similarity=0.655 Sum_probs=21.6
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emi_A 12 HYECSECGKAFIQKSTLSMHQRIHR 36 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHGGGC
T ss_pred CCCCCCCCcccCCHHHHHHHHhHhC
Confidence 5999999999999989888877763
No 323
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.77 E-value=14 Score=23.87 Aligned_cols=25 Identities=28% Similarity=0.741 Sum_probs=21.6
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em6_A 12 CYKCDVCGKEFSQSSHLQTHQRVHT 36 (46)
T ss_dssp CCBCSSSCCBCSSHHHHHHHHTTTS
T ss_pred CeECCCCCcccCCHHHHHHHHHHcC
Confidence 5899999999999999988877764
No 324
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.40 E-value=12 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.3
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (44)
T 2epv_A 12 PYECNECGKAFIWKSLLIVHERTHA 36 (44)
T ss_dssp SEECSSSCCEESSHHHHHHHHGGGS
T ss_pred CeECCCCCcccCchHHHHHHHhHhc
Confidence 5999999999998888888877663
No 325
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.36 E-value=12 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=21.6
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (45)
T 2epu_A 12 PFECTHCGKSFRAKGNLVTHQRIHT 36 (45)
T ss_dssp SEEETTTTEEESSHHHHHHHHTTTS
T ss_pred CccCCCCCCccCChHHHHHHHHHhC
Confidence 5999999999999999888877663
No 326
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=32.36 E-value=20 Score=40.59 Aligned_cols=26 Identities=38% Similarity=0.975 Sum_probs=19.9
Q ss_pred eEEcCCCCc-c---------ccCCC-CCCCCCCceec
Q 014440 303 GYTCPRCKA-R---------VCELP-TECRICGLQLV 328 (424)
Q Consensus 303 Gy~Cp~C~s-~---------~C~lP-~~C~~C~l~Lv 328 (424)
.|+||.|+- - =++|| -.||.||..|.
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~ 538 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYK 538 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCE
T ss_pred cccCccccccccccccccccccCCccccCcccccccc
Confidence 899999983 2 24567 48999999864
No 327
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.29 E-value=16 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.8
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eon_A 12 PYKCQVCGKAFRVSSHLVQHHSVHS 36 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHTTTTT
T ss_pred ccCCCCCCcccCcHHHHHHHHHhcC
Confidence 5899999999999999988887764
No 328
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.23 E-value=14 Score=23.80 Aligned_cols=25 Identities=24% Similarity=0.677 Sum_probs=21.8
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++..|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytf_A 12 PFECSECQKAFNTKSNLIVHQRTHT 36 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHTSC
T ss_pred CcCCCCCCcccCCHHHHHHHHHHhC
Confidence 5999999999999999998877764
No 329
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.15 E-value=65 Score=24.53 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=32.9
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccch-hhhccC--CCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI-YIHESL--HNCPGCESLR 414 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~-fihe~l--h~CPgC~~~~ 414 (424)
...|..|...|.. ..+|+.|++.|=.+|=. ++ .+- ..||.|...-
T Consensus 15 i~~C~IC~~~i~~-------g~~C~~C~h~fH~~Ci~kWl-~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 15 VKICNICHSLLIQ-------GQSCETCGIRMHLPCVAKYF-QSNAEPRCPHCNDYW 62 (74)
T ss_dssp SCBCSSSCCBCSS-------SEECSSSCCEECHHHHHHHS-TTCSSCCCTTTCSCC
T ss_pred CCcCcchhhHccc-------CCccCCCCchhhHHHHHHHH-HhcCCCCCCCCcCcC
Confidence 3579999977742 35799999999888864 33 333 7999998643
No 330
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.99 E-value=18 Score=21.97 Aligned_cols=19 Identities=21% Similarity=0.642 Sum_probs=12.9
Q ss_pred CCCCCCCCceecCc-hhHHh
Q 014440 317 PTECRICGLQLVSS-PHLAR 335 (424)
Q Consensus 317 P~~C~~C~l~Lvs~-phLar 335 (424)
|-.|+.|+..+... .+|.+
T Consensus 9 ~~~C~~C~k~f~~~~~~L~~ 28 (37)
T 2elp_A 9 AMKCPYCDFYFMKNGSDLQR 28 (37)
T ss_dssp CEECSSSSCEECSSCHHHHH
T ss_pred CeECCCCChhhccCHHHHHH
Confidence 34566677788777 77755
No 331
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.41 E-value=13 Score=23.77 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.6
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H 35 (44)
T 2yu5_A 12 PFKCSKCDRVFTQRNYLVQHERTH 35 (44)
T ss_dssp SEECSSSSCEESSSHHHHHHHHHC
T ss_pred CeECCCCCchhCCHHHHHHHhHhc
Confidence 599999999999988888887666
No 332
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=31.34 E-value=21 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.638 Sum_probs=20.8
Q ss_pred EcCCCCcccc-----CCCCCCCCCCceecCc
Q 014440 305 TCPRCKARVC-----ELPTECRICGLQLVSS 330 (424)
Q Consensus 305 ~Cp~C~s~~C-----~lP~~C~~C~l~Lvs~ 330 (424)
.||-|..+.- ..++.|..||.+|.-+
T Consensus 36 kCp~C~~~q~VFSha~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 36 KCPGCLNITTVFSHAQTAVTCESCSTILCTP 66 (82)
T ss_dssp ECTTSCSCEEEESBCSSCCCCSSSCCCCEEC
T ss_pred ECCCCCCeeEEEecCCeEEEccccCCEEecc
Confidence 5999998654 4568999999998754
No 333
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.28 E-value=21 Score=22.29 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=16.2
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H 29 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRLVQH 29 (42)
T ss_dssp CSCBCTTTCCBCSSHHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHHH
Confidence 355778889999988888764
No 334
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=31.26 E-value=1.8e+02 Score=22.67 Aligned_cols=36 Identities=3% Similarity=-0.019 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhCCcEEEEEEecchHHHHHHHHHHhC
Q 014440 206 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETG 241 (424)
Q Consensus 206 ~i~~~i~~akk~~IrV~vIgLg~e~~iLq~iA~~TG 241 (424)
.-..+...+.+.+|....|-+..+..+.+++.+.+|
T Consensus 32 ~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 67 (109)
T 1wik_A 32 FSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67 (109)
T ss_dssp THHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC
Confidence 346788899999999999999887777777887777
No 335
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.26 E-value=11 Score=23.99 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=21.4
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|+..|-..-++..|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2eof_A 12 PYECNECQKAFNTKSNLMVHQRTHT 36 (44)
T ss_dssp SEECTTTCCEESCHHHHHHHHHHTT
T ss_pred CeECCCCCcccCCHhHHHHHHHHhC
Confidence 5999999999999999888876663
No 336
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.20 E-value=16 Score=29.99 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=7.5
Q ss_pred CCCCCCCCceec
Q 014440 317 PTECRICGLQLV 328 (424)
Q Consensus 317 P~~C~~C~l~Lv 328 (424)
.+.|..|+..+.
T Consensus 5 ~~~C~~C~~~I~ 16 (122)
T 1m3v_A 5 WKRCAGCGGKIA 16 (122)
T ss_dssp CCCBSSSSSCCC
T ss_pred CCCCcccCCEeC
Confidence 456777776654
No 337
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.09 E-value=11 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=19.8
Q ss_pred eeeCCCcCcccccccchhhh-ccCC
Q 014440 382 CVACPKCKKHFCLECDIYIH-ESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fih-e~lh 405 (424)
.|.|+.|++.|-..-+.-.| ...|
T Consensus 9 ~~~C~~C~k~f~~~~~L~~H~~~~H 33 (37)
T 2elm_A 9 LYYCSQCHYSSITKNCLKRHVIQKH 33 (37)
T ss_dssp EEECSSSSCEEECHHHHHHHHHHHT
T ss_pred CeECCCCCcccCCHHHHHHHHHHHc
Confidence 59999999999888887777 6555
No 338
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.96 E-value=15 Score=23.46 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=21.2
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2emb_A 12 RYECSKCQATFNLRKHLIQHQKTHA 36 (44)
T ss_dssp SEECTTTCCEESCHHHHHHHGGGGC
T ss_pred CeECCCCCCccCCHHHHHHHHHHcC
Confidence 5999999999998888888877663
No 339
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=30.92 E-value=16 Score=21.18 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=20.0
Q ss_pred eeCC--CcCcccccccchhhhccCCC
Q 014440 383 VACP--KCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 383 ~~C~--~C~~~fC~dCd~fihe~lh~ 406 (424)
|.|+ .|++.|=..-++-.|...|.
T Consensus 3 ~~C~~~~C~k~f~~~~~L~~H~~~H~ 28 (31)
T 1sp2_A 3 FMCTWSYCGKRFTRSDELQRHKRTHT 28 (31)
T ss_dssp CBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred cCCcCCCCCcccCCHhHHHHHHHHhc
Confidence 7897 89999988888888887764
No 340
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.90 E-value=22 Score=25.17 Aligned_cols=26 Identities=31% Similarity=0.948 Sum_probs=18.6
Q ss_pred eEEcCCCCccccC-----CC-CCCCCCCceec
Q 014440 303 GYTCPRCKARVCE-----LP-TECRICGLQLV 328 (424)
Q Consensus 303 Gy~Cp~C~s~~C~-----lP-~~C~~C~l~Lv 328 (424)
-|.|=+|+.-|-. || ..||.||-..+
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 4889999988874 55 58999996543
No 341
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=30.80 E-value=3.1e+02 Score=27.52 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecchH----HHHHHHHHHhC--C-EEEEecChhhHHHHHHhcC
Q 014440 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM----FICKHLCQETG--G-TYSVALDESHSKELILEHA 261 (424)
Q Consensus 189 ~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e~----~iLq~iA~~TG--G-~Y~~~~d~~~L~~lL~~~~ 261 (424)
.++|+|..+ +......++.+.+.|+.|-.++.+... ..++++.+..+ + ..+...|..++.+++.+.-
T Consensus 312 gkrv~i~~~------~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~~ 385 (458)
T 1mio_B 312 GKKVALLGD------PDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEG 385 (458)
T ss_dssp TCEEEEEEC------HHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSC
T ss_pred CCEEEEEcC------chHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcC
Confidence 345655543 223456778889999999888887642 34555555554 3 4444457778888777653
Q ss_pred CCCccch--------hhhhhheeeecCCCCCC
Q 014440 262 PPPPAIA--------EFAIASLIKMGFPQRAG 285 (424)
Q Consensus 262 ~pp~~~~--------~~~~~~Li~mGFP~~~~ 285 (424)
|.-.-. ......++++|||....
T Consensus 386 -pDl~ig~~~~~~~a~k~gip~~~~~fPi~dr 416 (458)
T 1mio_B 386 -VDLLISNTYGKFIAREENIPFVRFGFPIMDR 416 (458)
T ss_dssp -CSEEEESGGGHHHHHHHTCCEEECSSCCCSC
T ss_pred -CCEEEeCcchHHHHHHcCCCEEEeeCCceec
Confidence 322211 12345789999997653
No 342
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.78 E-value=26 Score=23.71 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=21.7
Q ss_pred eeeCCCcCcccccccchhhhcc-CC------CCCCCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHES-LH------NCPGCES 412 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~-lh------~CPgC~~ 412 (424)
.|.|+.|++.|-..-++-.|.. .| .|+.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k 49 (54)
T 2eps_A 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49 (54)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCC
T ss_pred CeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCC
Confidence 4788888888877777777753 44 5777754
No 343
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.72 E-value=17 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=21.7
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yrj_A 12 PYRCGECGKAFAQKANLTQHQRIHT 36 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CeECCCCCCccCCHHHHHHHHHHcC
Confidence 5999999999999999988877763
No 344
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=30.53 E-value=17 Score=28.64 Aligned_cols=36 Identities=25% Similarity=0.548 Sum_probs=27.1
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE 402 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe 402 (424)
...|..|...+..+ ....|..|+..||..|..-+|.
T Consensus 3 e~~C~~C~~~~~~~-----av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQD-----AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCB-----CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCC-----ceEECCcCChHHhHHHCHHHhc
Confidence 45799998543211 2467999999999999998887
No 345
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.37 E-value=17 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.687 Sum_probs=21.8
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++-.|...|.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2ytp_A 12 HYECSECGKAFARKSTLIMHQRIHT 36 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CeECCcCCcccCCHHHHHHHHHHhC
Confidence 5999999999999999988887764
No 346
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.29 E-value=26 Score=22.21 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=16.6
Q ss_pred eeeCCCcCcccccccchhhhccC
Q 014440 382 CVACPKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~l 404 (424)
.|.|+.|++.|=..-++..|...
T Consensus 10 ~~~C~~C~k~f~~~~~L~~H~~~ 32 (44)
T 2emx_A 10 PFGCSCCEKAFSSKSYLLVHQQT 32 (44)
T ss_dssp CEECSSSSCEESSHHHHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHHHH
Confidence 47888888888777777666443
No 347
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.28 E-value=15 Score=23.73 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=21.3
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yth_A 12 PFQCEECGKRFTQNSHLHSHQRVHT 36 (46)
T ss_dssp SBCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred CCCCCCCCcccCCHHHHHHHHHhcC
Confidence 5899999999999989888877663
No 348
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.20 E-value=48 Score=27.06 Aligned_cols=70 Identities=16% Similarity=0.336 Sum_probs=42.6
Q ss_pred CCCCCCC--CCceecCchhHHhhhc-ccCCCCCCcccCccccccccCCCCCceee--cccccccCCC---------CCCc
Q 014440 316 LPTECRI--CGLQLVSSPHLARSYH-HLFPIAPFDEATPSRLNDLHNISRSTCFG--CQQSLLASGN---------KAGL 381 (424)
Q Consensus 316 lP~~C~~--C~l~Lvs~phLarsyh-hl~p~~~f~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~---------~~~~ 381 (424)
-|-.|+. |+..+.+...|.+-.- |. .. ....|.- |.+.|..... ....
T Consensus 66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~-~~-----------------~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~ 127 (155)
T 2gli_A 66 KPHKCTFEGCRKSYSRLENLKTHLRSHT-GE-----------------KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127 (155)
T ss_dssp CCCCCCSTTCCCCCSSHHHHHHHHHHTT-TC-----------------CCEECCSTTCCCEESSSSTTHHHHHHTTCSCC
T ss_pred CCccCCCCCCCCcccCHHHHHHHHHHcC-CC-----------------CCeeCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence 3556764 8888888887765421 21 00 1235775 8888865431 1223
Q ss_pred eeeCCC--cCcccccccchhhhcc
Q 014440 382 CVACPK--CKKHFCLECDIYIHES 403 (424)
Q Consensus 382 ~~~C~~--C~~~fC~dCd~fihe~ 403 (424)
.|.|+. |+..|=..=++-.|-.
T Consensus 128 ~~~C~~~~C~~~f~~~~~L~~H~~ 151 (155)
T 2gli_A 128 PYVCKLPGCTKRYTDPSSLRKHVK 151 (155)
T ss_dssp CEECCSTTTCCEESSHHHHHHHHH
T ss_pred CeeCCCCCCccccCCHHHHHHHHH
Confidence 599987 9998876655555543
No 349
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=30.19 E-value=17 Score=28.15 Aligned_cols=39 Identities=31% Similarity=0.584 Sum_probs=27.8
Q ss_pred CCceee--cccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCCC
Q 014440 362 RSTCFG--CQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPGC 410 (424)
Q Consensus 362 ~~~C~~--C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPgC 410 (424)
...|.. |.+.= -..|.|..|+..||.+ --+-.-|.||+=
T Consensus 14 g~~Cs~~~C~~~d-------flpf~C~~C~~~FC~~---HR~~e~H~C~~~ 54 (75)
T 1wys_A 14 GQHCQVQHCRQRD-------FLPFVCDGCSGIFCLE---HRSKDSHGCSEV 54 (75)
T ss_dssp CCCCSCTTTCCCS-------CCCEECTTTCCEECST---TCSSGGGTCCCC
T ss_pred CCCcCcccCCCcc-------ceeeECcccCcCcCcc---cCCccccCCCCC
Confidence 447887 87331 1359999999999986 334568999873
No 350
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=30.17 E-value=18 Score=28.50 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=21.5
Q ss_pred EcCCCCcccc-----CCCCCCCCCCceecCch
Q 014440 305 TCPRCKARVC-----ELPTECRICGLQLVSSP 331 (424)
Q Consensus 305 ~Cp~C~s~~C-----~lP~~C~~C~l~Lvs~p 331 (424)
-||-|..+.- ..++.|..||.+|.-++
T Consensus 34 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PT 65 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNAQSTIICEKCSAILCKPT 65 (81)
T ss_dssp ECSSSCCEEEEETTCSSCEECSSSCCEEEEEC
T ss_pred ECCCCCCeeEEEecCccEEEccCCCCEEeecC
Confidence 6999998765 45689999999997653
No 351
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.17 E-value=13 Score=23.73 Aligned_cols=25 Identities=24% Similarity=0.455 Sum_probs=21.4
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2eoj_A 12 PYECCECGKVFSRKDQLVSHQKTHS 36 (44)
T ss_dssp SCEETTTTEECSSHHHHHHHHTTSS
T ss_pred CeeCCCCCCccCCHHHHHHHHHHcC
Confidence 4899999999999988888877763
No 352
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.08 E-value=14 Score=23.80 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.6
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++-.|...|.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2yti_A 12 PYKCNECGKVFTQNSHLARHRGIHT 36 (46)
T ss_dssp TTCCSSSCCCCSSHHHHHHHHTTTS
T ss_pred CeECCCCCcccCChhHHHHHhHhcC
Confidence 4889999999999999888887764
No 353
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.53 E-value=16 Score=21.32 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=20.0
Q ss_pred eeeCC--CcCcccccccchhhhccCCC
Q 014440 382 CVACP--KCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~--~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+ .|++.|=..-++-.|...|.
T Consensus 3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~ 29 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRNHDLIRHKKSHQ 29 (32)
T ss_dssp SBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred CCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence 37898 89999988888888877663
No 354
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.50 E-value=16 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.568 Sum_probs=21.8
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq1_A 12 PYKCNECGKAFRAHSNLTTHQVIHT 36 (46)
T ss_dssp CCCCTTTTCCCSSHHHHHHHHTTTC
T ss_pred CeECCcCChhhCCHHHHHHHHHHhC
Confidence 5899999999999999998987774
No 355
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.47 E-value=22 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=16.7
Q ss_pred eeeCCCcCcccccccchhhhccC
Q 014440 382 CVACPKCKKHFCLECDIYIHESL 404 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~l 404 (424)
.|.|+.|++.|=..-++-.|...
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2ytt_A 12 PYQCSECGKSFSGSYRLTQHWIT 34 (46)
T ss_dssp TTCCSSSCCCCSSHHHHHHHHTH
T ss_pred CeeCCCCCcccCCHHHHHHHHHH
Confidence 47788888888777777766543
No 356
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=29.14 E-value=16 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=21.2
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|..+|.
T Consensus 32 p~~C~~C~k~F~~~~~L~~H~~~Ht 56 (60)
T 4gzn_C 32 PRSCPECGKCFRDQSEVNRHLKVHQ 56 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHGGGGS
T ss_pred CeECCCCCCCcCCHHHHHHHhCccC
Confidence 4889999999999888888887763
No 357
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.14 E-value=30 Score=27.37 Aligned_cols=39 Identities=38% Similarity=0.828 Sum_probs=27.9
Q ss_pred CCCceee--cccccccCCCCCCceeeCCCcCcccccccchhhhccCCCCCC
Q 014440 361 SRSTCFG--CQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHESLHNCPG 409 (424)
Q Consensus 361 ~~~~C~~--C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe~lh~CPg 409 (424)
....|.. |.+.-. ..|.|..|+..||.+ -=|..-|.||+
T Consensus 24 ~~~~C~~~~Ck~~~~-------l~f~C~~C~~~FC~~---HR~~e~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVEL-------VAVICPYCEKNFCLR---HRHQSDHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEES-------SCEECTTTCCEECGG---GCSTGGGTCSS
T ss_pred CCCCCCCcCCCCCCc-------cceECCCCCcccccc---cCCccCCCCCC
Confidence 3557888 974421 358999999999986 22445699987
No 358
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.04 E-value=18 Score=29.80 Aligned_cols=29 Identities=28% Similarity=0.759 Sum_probs=21.4
Q ss_pred ceeeecCCcc-ccCeEEcCCCCccccCCCCCCCCCCce
Q 014440 290 SICSCHKEVK-IGVGYTCPRCKARVCELPTECRICGLQ 326 (424)
Q Consensus 290 a~C~CH~~~~-~~~Gy~Cp~C~s~~C~lP~~C~~C~l~ 326 (424)
-+=+|.+... .+ |++|..|--+ |++|.+.
T Consensus 9 DLimC~KqpG~~i-G~lCekcdGk-------C~iCDs~ 38 (109)
T 2k0a_A 9 DLIMCLKQPGVQT-GLLCEKCDGK-------CPICDSY 38 (109)
T ss_dssp TCCBCCCCEEEEE-CEECGGGTTC-------CTTTCCC
T ss_pred hhhhccCCCcchh-hhhhhhcCCc-------ccccCCc
Confidence 3456776654 45 9999999765 9999983
No 359
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=28.98 E-value=19 Score=29.16 Aligned_cols=29 Identities=38% Similarity=1.069 Sum_probs=22.2
Q ss_pred CCceeeccc-ccccCCCCCCceeeCCCcCc-cccccc
Q 014440 362 RSTCFGCQQ-SLLASGNKAGLCVACPKCKK-HFCLEC 396 (424)
Q Consensus 362 ~~~C~~C~~-~~~~~~~~~~~~~~C~~C~~-~fC~dC 396 (424)
...|-+|.. ++. ..||.|..|.. .+|.+|
T Consensus 31 gv~Cd~C~~~pI~------G~RykC~~C~d~DLC~~C 61 (98)
T 2dip_A 31 GIPCNNCKQFPIE------GKCYKCTECIEYHLCQEC 61 (98)
T ss_dssp CCCCSSSCCSSCC------SCEEEESSSSSCEEEHHH
T ss_pred CCCCcCCCCCCcc------cCeEECCCCCCccHHHHH
Confidence 368999985 342 25899999965 589999
No 360
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.92 E-value=24 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=18.8
Q ss_pred eeeCC--CcCcccccccchhhhccCC
Q 014440 382 CVACP--KCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~--~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+ .|++.|-..-.+-.|...|
T Consensus 12 ~~~C~~~~C~k~f~~~~~L~~H~~~H 37 (48)
T 2ent_A 12 PFACTWPGCGWRFSRSDELSRHRRSH 37 (48)
T ss_dssp CEECCSSSCCCEESSHHHHHHHHTTS
T ss_pred CeECCCCCCCCccCCHHHHHHHHHHh
Confidence 48887 8888888888877776665
No 361
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.88 E-value=19 Score=23.12 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=21.4
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|=..-++..|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep3_A 12 PYRCAECGKAFTDRSNLFTHQKIHT 36 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTTT
T ss_pred CeECCCCCchhCCHHHHHHHHHHcC
Confidence 5999999999999999888877663
No 362
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.84 E-value=14 Score=23.80 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=21.4
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq2_A 12 PYQCNECGKAFSQTSKLARHQRVHT 36 (46)
T ss_dssp SSSCCSSCCCCSSHHHHHHHGGGGC
T ss_pred CeECCCCCcccCCHHHHHHHHHHcC
Confidence 5899999999999999888877664
No 363
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.77 E-value=23 Score=34.74 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.2
Q ss_pred eEEcCCCCccccCC--CCCCCCCCceecCchh
Q 014440 303 GYTCPRCKARVCEL--PTECRICGLQLVSSPH 332 (424)
Q Consensus 303 Gy~Cp~C~s~~C~l--P~~C~~C~l~Lvs~ph 332 (424)
--.||-|+|+|..- -..|++|++.-|-.+.
T Consensus 278 ~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~~~ 309 (320)
T 3mkr_B 278 VEKCPLSGACYSPEFKGQICKVTTVTEIGKDV 309 (320)
T ss_dssp CEECTTTCCEECGGGTTSBCTTTSSBBSSCCC
T ss_pred CccCCCCCCeechhhCCCCCCCCcCcccCCcc
Confidence 45899999999964 5799999998776543
No 364
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=28.75 E-value=13 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.2
Q ss_pred eeeCCCcCcccccccchhhhccCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLH 405 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh 405 (424)
.|.|+.|++.|-..-++-.|...|
T Consensus 11 ~~~C~~C~k~f~~~~~l~~H~~~H 34 (42)
T 2epc_A 11 PYLCGQCGKSFTQRGSLAVHQRSC 34 (42)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHT
T ss_pred CeECCCCCcccCCHHHHHHHhhhc
Confidence 599999999998888888887665
No 365
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.61 E-value=20 Score=21.64 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=14.3
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H 28 (37)
T 2elo_A 9 SYSCPVCEKSFSEDRLIKSH 28 (37)
T ss_dssp CCEETTTTEECSSHHHHHHH
T ss_pred CcCCCCCCCccCCHHHHHHH
Confidence 45677788888888777653
No 366
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=28.31 E-value=16 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.0
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|+..|-..-++..|...|.
T Consensus 10 ~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (42)
T 2el5_A 10 PYECSECGKAFNRKDQLISHQRTHA 34 (42)
T ss_dssp SEECSSSCCEESSHHHHHHHHGGGC
T ss_pred CccCCCcChhhCCHHHHHHHHHhcC
Confidence 5999999999998888888876663
No 367
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.14 E-value=25 Score=22.21 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.5
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (44)
T 2en7_A 11 KPYVCNECGKAFRSKSYLIIH 31 (44)
T ss_dssp SSSCCTTTCCCCSSHHHHHHH
T ss_pred cCeECCCCCCccCCHHHHHHH
Confidence 355778899999999988764
No 368
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.93 E-value=24 Score=22.81 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=14.8
Q ss_pred eeeCCCcCcccccccchhhhcc
Q 014440 382 CVACPKCKKHFCLECDIYIHES 403 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~ 403 (424)
.|.|+.|++.|=..-++-.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSCTQHQR 33 (46)
T ss_dssp SSSBTTTTBCCSSHHHHHHHHH
T ss_pred CcCCCCCCchhCCHHHHHHHHH
Confidence 4777777777777666666543
No 369
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=27.79 E-value=33 Score=27.27 Aligned_cols=46 Identities=9% Similarity=-0.297 Sum_probs=31.2
Q ss_pred CCceeecccccccCCCCCCceeeCCCcC-cccccccchhhhccCCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCK-KHFCLECDIYIHESLHNCPGCESLRQ 415 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~-~~fC~dCd~fihe~lh~CPgC~~~~~ 415 (424)
.-.|.-|+..|.++ . ...|+ +.||..|=.-.-+.-..||.|.....
T Consensus 22 ~~~CpI~~~~m~dP-------V-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTLMCDP-------V-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSBCSSE-------E-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred hcCCcCccccccCC-------e-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 45799998777643 1 23578 99999995333233578999976443
No 370
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.52 E-value=33 Score=25.12 Aligned_cols=35 Identities=26% Similarity=0.635 Sum_probs=25.2
Q ss_pred CCceeecccccccCCCCCCceeeCCC--cCcccccccch
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPK--CKKHFCLECDI 398 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~--C~~~fC~dCd~ 398 (424)
...|..|...+...++ =..-.|.. |+..||.-|-.
T Consensus 6 ~k~CP~C~~~Iek~~G--CnhmtC~~~~C~~~FCw~C~~ 42 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGG--CNHMVCRNQNCKAEFCWVCLG 42 (60)
T ss_dssp CCCCTTTCCCCSSCCS--CCSSSCCSSGGGSCCSSSSCS
T ss_pred ceECcCCCCeeEeCCC--CCcEEECCCCcCCEEeeCcCC
Confidence 4579999988865331 11346988 99999999974
No 371
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.31 E-value=15 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.653 Sum_probs=21.6
Q ss_pred eeeCCCcCcccccccchhhhccCCC
Q 014440 382 CVACPKCKKHFCLECDIYIHESLHN 406 (424)
Q Consensus 382 ~~~C~~C~~~fC~dCd~fihe~lh~ 406 (424)
.|.|+.|++.|-..-++-.|...|.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq3_A 12 PYECNQCGKAFSVRSSLTTHQAIHT 36 (46)
T ss_dssp SSEETTTTEECSSHHHHHHHHTTSC
T ss_pred CeECCCCChhhCCHHHHHHHHHHhC
Confidence 5899999999999999888877764
No 372
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=27.19 E-value=30 Score=34.13 Aligned_cols=41 Identities=27% Similarity=0.628 Sum_probs=29.8
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcc-cccccchhhhccCCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDIYIHESLHNCPGCESLR 414 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~fihe~lh~CPgC~~~~ 414 (424)
...|..|...+..+ .+ -.|++. ||..|-.- +..||-|-...
T Consensus 295 ~~~C~IC~~~~~~~------v~--lpCgH~~fC~~C~~~----~~~CP~CR~~i 336 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV------VF--IPCGHLVVCQECAPS----LRKCPICRGII 336 (345)
T ss_dssp TCBCTTTSSSBCCE------EE--ETTCCEEECTTTGGG----CSBCTTTCCBC
T ss_pred CCCCCccCCcCCce------EE--cCCCChhHhHHHHhc----CCcCCCCCCCc
Confidence 45899998666432 22 269999 99999764 38999997644
No 373
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=26.70 E-value=23 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=17.2
Q ss_pred CCCCCCCCCCceecCchhHHhh
Q 014440 315 ELPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 315 ~lP~~C~~C~l~Lvs~phLars 336 (424)
+-|-+|+.||..+...-+|.|-
T Consensus 6 ekp~~C~~CgK~F~~~s~L~~H 27 (36)
T 1fv5_A 6 PARFMCLPCGIAFSSPSTLEAH 27 (36)
T ss_dssp CCCCEETTTTEECSCHHHHHHH
T ss_pred ccCeECCCCCCccCCHhHccCc
Confidence 3466788899999998888764
No 374
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.60 E-value=26 Score=26.34 Aligned_cols=22 Identities=36% Similarity=1.017 Sum_probs=16.5
Q ss_pred eecCCccccCeEEcCCCCccccCC
Q 014440 293 SCHKEVKIGVGYTCPRCKARVCEL 316 (424)
Q Consensus 293 ~CH~~~~~~~Gy~Cp~C~s~~C~l 316 (424)
.|-.++..+ ||.| +|+-.||..
T Consensus 20 ~C~kkvgl~-~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 20 SCNKKVGVM-GFKC-KCGSTFCGS 41 (64)
T ss_dssp TTCCCCTTS-CEEC-TTSCEECSS
T ss_pred hhCCccccc-CeEe-ecCCEeccc
Confidence 455565556 8999 999999963
No 375
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.39 E-value=27 Score=34.35 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=30.6
Q ss_pred ceeeecCCccc----cCeEEcCCCCccccCC--CCCCCCCCceecCch
Q 014440 290 SICSCHKEVKI----GVGYTCPRCKARVCEL--PTECRICGLQLVSSP 331 (424)
Q Consensus 290 a~C~CH~~~~~----~~Gy~Cp~C~s~~C~l--P~~C~~C~l~Lvs~p 331 (424)
.+=.|...++. ..--.||-|+|+|..- -..|++|++.-|-.+
T Consensus 270 ~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~~ 317 (325)
T 3mv2_A 270 KFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAP 317 (325)
T ss_dssp CEEECTTTCCEEESSSCEEECTTTCCEEEGGGTTSBCSSSSCBBTTCC
T ss_pred CceeecCCcccccCCCCCccCCCCCCeechhhCCCCCCCCcCcccCCC
Confidence 45667766653 2245799999999964 579999999877543
No 376
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.36 E-value=25 Score=25.61 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=15.9
Q ss_pred EEcCCCCcc--ccC---CCCCCCCCCceec
Q 014440 304 YTCPRCKAR--VCE---LPTECRICGLQLV 328 (424)
Q Consensus 304 y~Cp~C~s~--~C~---lP~~C~~C~l~Lv 328 (424)
..||.|++. +=. =-..|..||+.|-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 468888762 111 2357889998864
No 377
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=26.32 E-value=1.2e+02 Score=28.24 Aligned_cols=54 Identities=11% Similarity=-0.106 Sum_probs=38.2
Q ss_pred cEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecc-----hHHHHHHHHHHhCCEEE
Q 014440 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA-----EMFICKHLCQETGGTYS 245 (424)
Q Consensus 190 reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~-----e~~iLq~iA~~TGG~Y~ 245 (424)
++|+|+.|...+ -+|=..++..|.+.|.+|.++-++. +.....++++..|+...
T Consensus 59 ~~v~VlcG~GNN--GGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (246)
T 1jzt_A 59 KHVFVIAGPGNN--GGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVL 117 (246)
T ss_dssp CEEEEEECSSHH--HHHHHHHHHHHHHTTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCC--HHHHHHHHHHHHHCCCeEEEEEcCCCCCCHHHHHHHHHHHHcCCcEE
Confidence 578888886543 4677788999999999999987654 12334456667777653
No 378
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=26.11 E-value=50 Score=30.74 Aligned_cols=44 Identities=25% Similarity=0.616 Sum_probs=31.5
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcccccccch-h-hhccCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI-Y-IHESLHNCPGCES 412 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~-f-ihe~lh~CPgC~~ 412 (424)
-..|..|...+. ...+|+.|+..|=..|=- | -+..-+.||.|..
T Consensus 180 i~~C~iC~~iv~-------~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCcCcchhhHHh-------CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 347999986654 237899999888888853 2 2334569999976
No 379
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=25.65 E-value=1.2e+02 Score=29.21 Aligned_cols=6 Identities=33% Similarity=0.423 Sum_probs=3.9
Q ss_pred eCCCCC
Q 014440 145 TDLGGS 150 (424)
Q Consensus 145 spLT~d 150 (424)
.|+|+.
T Consensus 21 ~plsG~ 26 (419)
T 3h5l_A 21 APLTGI 26 (419)
T ss_dssp ECCSST
T ss_pred ecCCCc
Confidence 467765
No 380
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=25.63 E-value=77 Score=23.50 Aligned_cols=50 Identities=18% Similarity=0.431 Sum_probs=34.3
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccch----hhhccCCCCCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDI----YIHESLHNCPGCESLRQSNP 418 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~----fihe~lh~CPgC~~~~~~~~ 418 (424)
....|..|. ..+ ....|..|...|=..|=. -+=+.--.||.|.....+.+
T Consensus 11 ~~~~C~vC~----~~~----~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P 64 (66)
T 2lri_C 11 PGARCGVCG----DGT----DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64 (66)
T ss_dssp TTCCCTTTS----CCT----TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred CCCCcCCCC----CCC----eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCccCC
Confidence 345799997 221 256799999999999952 22344569999987665543
No 381
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=25.53 E-value=3.2e+02 Score=27.19 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhCCcEEEEEEec--c---h---HHHHHHHHHHhCC--EEEE-ecChhhHHHHHHhcCCCCccchh-hhhh
Q 014440 206 DIMETIQKCKESKIRCSVIGLS--A---E---MFICKHLCQETGG--TYSV-ALDESHSKELILEHAPPPPAIAE-FAIA 273 (424)
Q Consensus 206 ~i~~~i~~akk~~IrV~vIgLg--~---e---~~iLq~iA~~TGG--~Y~~-~~d~~~L~~lL~~~~~pp~~~~~-~~~~ 273 (424)
.....+..+.+.|+.|-.+|.. . + ...|+++.+..+. .-.+ -.|..++.+++.+.- |.-.-.+ +...
T Consensus 328 ~~~~la~~L~elGm~vv~~gt~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~d~~el~~~i~~~~-pDL~ig~~~~~~ 406 (460)
T 2xdq_A 328 LEISLARFLIRCGMRVLEIGIPYMDKRYQAAELALLSQTCAEMGHPLPTIVEKPDNYNQLQRIKALQ-PDLVITGMAHAN 406 (460)
T ss_dssp CHHHHHHHHHHTTCEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCCCCEEEESCCHHHHHHHHHHHC-CSEEEECHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCChhHHHHHHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHhccC-CCEEEeCcccCc
Confidence 4456788889999988887753 1 1 3557777666553 3343 357777777777643 4333322 2224
Q ss_pred heeeecCCCC
Q 014440 274 SLIKMGFPQR 283 (424)
Q Consensus 274 ~Li~mGFP~~ 283 (424)
.++++|||..
T Consensus 407 ~~~r~G~P~~ 416 (460)
T 2xdq_A 407 PLEARGISTK 416 (460)
T ss_dssp HHHTBTCCEE
T ss_pred eeeeccCcEE
Confidence 5889999975
No 382
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=25.23 E-value=3.1e+02 Score=23.58 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=38.7
Q ss_pred CcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEec--chHHHHHHHHHHhCCEEEEecChhh------HHHHHHhc
Q 014440 189 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLS--AEMFICKHLCQETGGTYSVALDESH------SKELILEH 260 (424)
Q Consensus 189 ~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg--~e~~iLq~iA~~TGG~Y~~~~d~~~------L~~lL~~~ 260 (424)
.-||||+-++ .+ | +..+.++.+.+..-+|.+|--. .-..-+....+...|.|+...|.++ |..++..+
T Consensus 34 ~~eiIvvDd~-S~-d--~t~~~~~~~~~~~~~i~~i~~~n~G~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~ 109 (240)
T 3bcv_A 34 DIEIILIDDE-SP-D--NCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVA 109 (240)
T ss_dssp SEEEEEEECC-CS-S--SHHHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHH
T ss_pred CeEEEEEECC-CC-c--CHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHH
Confidence 4477776543 22 2 3355666655443345555321 1145667777778999998877663 55555444
No 383
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=24.80 E-value=2.6e+02 Score=28.23 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=47.0
Q ss_pred EEEEEEcCCCCCCccCHH-HHHHHHHhC--CcEEEEEEecchHHHHHHHHHHhCCEEEEecChhhHHHHH
Q 014440 191 EVLILYSALSTCDPGDIM-ETIQKCKES--KIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELI 257 (424)
Q Consensus 191 eILvI~ss~~t~dp~~i~-~~i~~akk~--~IrV~vIgLg~e~~iLq~iA~~TGG~Y~~~~d~~~L~~lL 257 (424)
+-|.|+||- |+|= +|++-++++ +.+|..++-|..+..|.+.+.+.+=.|.+..|+....++-
T Consensus 10 k~i~ILGST-----GSIGtqtLdVi~~~pd~f~V~aL~ag~nv~~L~~q~~~f~p~~v~v~d~~~~~~L~ 74 (406)
T 1q0q_A 10 KQLTILGST-----GSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLK 74 (406)
T ss_dssp EEEEEETTT-----SHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHH
T ss_pred eeEEEEccC-----cHHHHHHHHHHHhCCCccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHH
Confidence 345666652 4553 677777776 6788888778889999999999999999999988755543
No 384
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.71 E-value=33 Score=21.85 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=16.2
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+.....|.+-
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eov_A 11 KPYKCSDCGKSFTWKSRLRIH 31 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHHH
T ss_pred CCccCCccChhhCCHHHHHHH
Confidence 355778899999888888764
No 385
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=24.66 E-value=2.7e+02 Score=24.82 Aligned_cols=77 Identities=14% Similarity=0.031 Sum_probs=51.3
Q ss_pred CCCcEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecch--HHHHHHHHHHhC--C--EEE-EecChhhHHHHHHh
Q 014440 187 YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE--MFICKHLCQETG--G--TYS-VALDESHSKELILE 259 (424)
Q Consensus 187 ~~~reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~e--~~iLq~iA~~TG--G--~Y~-~~~d~~~L~~lL~~ 259 (424)
+.+..|.||++|.+ |-.-..++...|++.||..++--.++. ..-+.++++... | .++ .+--+.||-..+..
T Consensus 10 ~~~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~ 87 (173)
T 4grd_A 10 HSAPLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA 87 (173)
T ss_dssp CSSCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred CCCCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee
Confidence 44557999998742 433334889999999999765555543 344455544432 2 444 36778899999999
Q ss_pred cCCCCc
Q 014440 260 HAPPPP 265 (424)
Q Consensus 260 ~~~pp~ 265 (424)
.++-|.
T Consensus 88 ~t~~PV 93 (173)
T 4grd_A 88 KTTVPV 93 (173)
T ss_dssp HCCSCE
T ss_pred cCCCCE
Confidence 887664
No 386
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=24.61 E-value=26 Score=23.71 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.8
Q ss_pred eEEcCCCCccc
Q 014440 303 GYTCPRCKARV 313 (424)
Q Consensus 303 Gy~Cp~C~s~~ 313 (424)
.|.||+|+..+
T Consensus 9 ~~~C~~C~~~i 19 (39)
T 2i5o_A 9 QVPCEKCGSLV 19 (39)
T ss_dssp EEECTTTCCEE
T ss_pred CcccccccCcC
Confidence 78999998753
No 387
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.58 E-value=29 Score=25.61 Aligned_cols=21 Identities=33% Similarity=0.920 Sum_probs=15.5
Q ss_pred eEEcCCCCccccCCC-CCCCCCCc
Q 014440 303 GYTCPRCKARVCELP-TECRICGL 325 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP-~~C~~C~l 325 (424)
--.||+|+.. .+| ..|+.||.
T Consensus 30 l~~c~~cG~~--~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGK--KLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCE--ECTTBCCTTTCB
T ss_pred ceECCCCCCE--eCCceEcCCCCc
Confidence 3478888888 555 67888884
No 388
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=24.57 E-value=75 Score=24.98 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=39.2
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCCCCcEEEE-EEc-CCCC----CCc---cCHHHHHHHHHhCCcEEEEEEecch
Q 014440 164 CSGDSSIQNALDLVHGLLNQIPSYGHREVLI-LYS-ALST----CDP---GDIMETIQKCKESKIRCSVIGLSAE 229 (424)
Q Consensus 164 ~~G~tsL~~AL~~Al~~L~~~p~~~~reILv-I~s-s~~t----~dp---~~i~~~i~~akk~~IrV~vIgLg~e 229 (424)
|.|......||..|...+.. ++..+|-| +++ +... ..| .++.+.++.+.+.||+|++++...+
T Consensus 12 p~~~~~~~~al~~a~~~~~~---~g~~~v~vff~~dgV~~~~~~~~~~~~~~~~~~l~~l~~~gv~v~~C~~~l~ 83 (117)
T 1jx7_A 12 PYGSESLFNSLRLAIALREQ---ESNLDLRLFLMSDAVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTD 83 (117)
T ss_dssp TTTCSHHHHHHHHHHHHHHH---CTTCEEEEEECGGGGGGGBSCCCCSSSCCHHHHHHHHHHTTCCEEEEHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhc---CCCccEEEEEEchHHHHHhcCCCCCcCCCHHHHHHHHHHCCCEEEEeHHHHH
Confidence 34555677788888887765 12213333 333 2111 111 3677888889999999999987654
No 389
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.47 E-value=35 Score=25.54 Aligned_cols=25 Identities=36% Similarity=0.717 Sum_probs=20.0
Q ss_pred eEEcCCCCccccC---CCCCCCCCCcee
Q 014440 303 GYTCPRCKARVCE---LPTECRICGLQL 327 (424)
Q Consensus 303 Gy~Cp~C~s~~C~---lP~~C~~C~l~L 327 (424)
-|+|..|+..+-- -+..|+-||-.+
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCcEE
Confidence 7999999998752 357999999654
No 390
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=24.41 E-value=34 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=23.8
Q ss_pred eEEcCCCCccccCCCCCCCCCCceecCc
Q 014440 303 GYTCPRCKARVCELPTECRICGLQLVSS 330 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP~~C~~C~l~Lvs~ 330 (424)
++.||.|..+.=-.-..|-+|++..-++
T Consensus 8 ~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 8 GWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp SEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 7999999988877778999999986544
No 391
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.35 E-value=14 Score=34.60 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=19.5
Q ss_pred CCceeecccccccCC----CCCCceeeCCCcCccc
Q 014440 362 RSTCFGCQQSLLASG----NKAGLCVACPKCKKHF 392 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~----~~~~~~~~C~~C~~~f 392 (424)
.+.|.||...+|... ........||.|+.+.
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRIL 232 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEE
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeE
Confidence 568999999887431 0111246788887653
No 392
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=24.31 E-value=24 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceeecccccccCCCCCCceeeCCCcCcccccccc
Q 014440 364 TCFGCQQSLLASGNKAGLCVACPKCKKHFCLECD 397 (424)
Q Consensus 364 ~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd 397 (424)
.|..|++.+... ..+.|.|++|+.. ..|.
T Consensus 44 ACp~CnKKV~~~---~~g~~~CekC~~~--~~~~ 72 (172)
T 3u50_C 44 RCTCQGKSVLKY---HGDSFFCESCQQF--INPQ 72 (172)
T ss_dssp ECTTSCCCEEEE---TTTEEEETTTTEE--CCCE
T ss_pred hchhhCCEeeeC---CCCeEECCCCCCC--CCce
Confidence 588899888532 2247999999986 5543
No 393
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.20 E-value=28 Score=22.29 Aligned_cols=20 Identities=30% Similarity=0.683 Sum_probs=14.5
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2en3_A 12 PFQCKECGMNFSWSCSLFKH 31 (46)
T ss_dssp SEECSSSCCEESSSHHHHHH
T ss_pred CeeCcccChhhCCHHHHHHH
Confidence 44566788888888888654
No 394
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.18 E-value=33 Score=26.69 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=26.5
Q ss_pred Cceeeccccc-ccCCC-------CCCceeeCCCcCcccccccchhhh-ccCC
Q 014440 363 STCFGCQQSL-LASGN-------KAGLCVACPKCKKHFCLECDIYIH-ESLH 405 (424)
Q Consensus 363 ~~C~~C~~~~-~~~~~-------~~~~~~~C~~C~~~fC~dCd~fih-e~lh 405 (424)
..|--|.+.| ..... -....|.|+.|++.|-..-++-.| ...|
T Consensus 35 ~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H 86 (96)
T 2ctd_A 35 VSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86 (96)
T ss_dssp EECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred cCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence 4677777777 43210 012247788888877777777777 6555
No 395
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.15 E-value=35 Score=26.25 Aligned_cols=26 Identities=19% Similarity=0.597 Sum_probs=18.3
Q ss_pred eEEcCCCCccccCCCC----CCCCCCceec
Q 014440 303 GYTCPRCKARVCELPT----ECRICGLQLV 328 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP~----~C~~C~l~Lv 328 (424)
-|.||.|+..-=+-.. .|.-|+.++.
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 6999999876433222 7999987764
No 396
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.12 E-value=31 Score=25.93 Aligned_cols=22 Identities=36% Similarity=0.992 Sum_probs=16.1
Q ss_pred eecCCccccCeEEcCCCCccccCC
Q 014440 293 SCHKEVKIGVGYTCPRCKARVCEL 316 (424)
Q Consensus 293 ~CH~~~~~~~Gy~Cp~C~s~~C~l 316 (424)
.|-.++..+ ||.| +|+-.||..
T Consensus 20 ~C~kkvgl~-~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 20 VCRKRVGLT-GFMC-RCGTTFCGS 41 (64)
T ss_dssp TTCCCCCTT-CEEC-SSSCEECTT
T ss_pred hhCCccCcc-CEEe-ecCCEeccc
Confidence 455555556 8999 899999863
No 397
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.73 E-value=35 Score=21.64 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=15.9
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H 31 (44)
T 2eou_A 11 TTSECQECGKIFRHSSLLIEH 31 (44)
T ss_dssp CCCCCTTTCCCCSSHHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHHH
Confidence 355778888888888888664
No 398
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.72 E-value=34 Score=25.60 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=31.0
Q ss_pred cccCCCCCCcccCccccccccCCCCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc---cCCCCCCCC
Q 014440 338 HHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE---SLHNCPGCE 411 (424)
Q Consensus 338 hhl~p~~~f~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe---~lh~CPgC~ 411 (424)
||-|+..++.+-+. .....+| -|.++.. ....-+|..|...|=..|--..-+ ....||.|.
T Consensus 2 ~~~~~~~~~~~~~~-------~~~~~~C-iC~~~~~-----~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~ 65 (68)
T 3o70_A 2 HHHHHHSSGRENLY-------FQGLVTC-FCMKPFA-----GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 65 (68)
T ss_dssp ------------CT-------TTTCCCS-TTCCCCT-----TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHH
T ss_pred cccccCCcccccCC-------CCCceEe-ECCCcCC-----CCCEEECCCCCccccccccCcCcccCCCcEECCCCC
Confidence 55566666665431 2246689 8886543 123568999999998888765443 345677664
No 399
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.65 E-value=35 Score=21.85 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=16.5
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eoh_A 11 KPYECKECRKTFIQIGHLNQH 31 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCCcCchhCCHHHHHHH
Confidence 355788899999998888764
No 400
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=23.53 E-value=1.3e+02 Score=25.62 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=18.8
Q ss_pred HHHHHHHhCCEEEEecChhhHHHHHHhcCCC
Q 014440 233 CKHLCQETGGTYSVALDESHSKELILEHAPP 263 (424)
Q Consensus 233 Lq~iA~~TGG~Y~~~~d~~~L~~lL~~~~~p 263 (424)
++++++..+..+....|.+.+-+.+.+...|
T Consensus 108 ~~~~~~~~~~~~~~~~d~~eai~~~~~~~~~ 138 (163)
T 3mvn_A 108 VSEVLANLAQPAISADDVDELVMRIVQQAKP 138 (163)
T ss_dssp HHHHHTTCCSCEEEESSHHHHHHHHHHHCCT
T ss_pred HHHHHhhCCCCeEEECCHHHHHHHHHHhCCC
Confidence 5666655555555666766666666666544
No 401
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=23.36 E-value=20 Score=36.05 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=32.1
Q ss_pred CCCceeecccccccCCCCCCceeeCC--CcCcccccccchh----------hhccCCCCCCCCCCC
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACP--KCKKHFCLECDIY----------IHESLHNCPGCESLR 414 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~--~C~~~fC~dCd~f----------ihe~lh~CPgC~~~~ 414 (424)
...+|.-|- .+ ...+.|. .|...||.+|=.. ..+.--+|--|...+
T Consensus 92 ~~~yCr~C~----~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICC----SG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTC----CC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcC----CC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 456888886 22 2368999 9999999999521 223566888887544
No 402
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.33 E-value=24 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=13.9
Q ss_pred EEcCCCCccccCCCC----CCCCCCce
Q 014440 304 YTCPRCKARVCELPT----ECRICGLQ 326 (424)
Q Consensus 304 y~Cp~C~s~~C~lP~----~C~~C~l~ 326 (424)
.+||+|++..-.... .|+.||+.
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~ 37 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLA 37 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCcc
Confidence 678888875332222 57777665
No 403
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.31 E-value=22 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.644 Sum_probs=17.5
Q ss_pred eEEcCCCCccccCCC----CCCCCCCceec
Q 014440 303 GYTCPRCKARVCELP----TECRICGLQLV 328 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP----~~C~~C~l~Lv 328 (424)
-|.||.|+.-.=.-| -.|+-|+.++.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 699999998322222 35888988754
No 404
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.31 E-value=35 Score=21.71 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=16.6
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ep1_A 11 KPYECSDCGKSFIKKSQLHVH 31 (46)
T ss_dssp CSSCCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCCCCchhCCHHHHHHH
Confidence 355788899999999988764
No 405
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.00 E-value=99 Score=23.41 Aligned_cols=55 Identities=22% Similarity=0.477 Sum_probs=36.7
Q ss_pred CCCceeecccccccCCCCCCceeeCCCcCcccccccchhhhc-----cCCCCCCCCCCCCCCCcc
Q 014440 361 SRSTCFGCQQSLLASGNKAGLCVACPKCKKHFCLECDIYIHE-----SLHNCPGCESLRQSNPVV 420 (424)
Q Consensus 361 ~~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~fC~dCd~fihe-----~lh~CPgC~~~~~~~~~~ 420 (424)
...+| .|.++... ....-+|..|...|=.+|--+-.+ ....||.|.....+...+
T Consensus 11 ~~~~C-~C~~~~d~----~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~K 70 (79)
T 1wep_A 11 VPVYC-LCRQPYNV----NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMK 70 (79)
T ss_dssp CCCCS-TTSCSCCS----SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCBCC
T ss_pred CccEE-EcCCccCC----CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCCcee
Confidence 35688 79866521 123568999999988888765443 457899998755444333
No 406
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=22.96 E-value=26 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=18.3
Q ss_pred eEEcCCCCc----cccCCCCCCCCCCceec
Q 014440 303 GYTCPRCKA----RVCELPTECRICGLQLV 328 (424)
Q Consensus 303 Gy~Cp~C~s----~~C~lP~~C~~C~l~Lv 328 (424)
-|.||.|+. +...---.|+-|+.++.
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEE
Confidence 799999997 22222236999998864
No 407
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.96 E-value=29 Score=22.25 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=14.8
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2yto_A 12 PYKCSDCGKAFTRKSGLHIH 31 (46)
T ss_dssp CEECSSSCCEESSHHHHHHH
T ss_pred CEECcccCCccCCHhHHHHH
Confidence 44566788888888888764
No 408
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=22.93 E-value=2.5e+02 Score=23.55 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=40.5
Q ss_pred CCCCcchHHHHHHHHHHHHcCCCCCCCcEE--EEEEcC-CC--------CCCccCHHHHHHHH-HhCCcEEEEEEecc
Q 014440 163 GCSGDSSIQNALDLVHGLLNQIPSYGHREV--LILYSA-LS--------TCDPGDIMETIQKC-KESKIRCSVIGLSA 228 (424)
Q Consensus 163 ~~~G~tsL~~AL~~Al~~L~~~p~~~~reI--LvI~ss-~~--------t~dp~~i~~~i~~a-kk~~IrV~vIgLg~ 228 (424)
.|-|...-.+||..|...+... + +| |+++++ .. ..+..++.+..+.+ ++.+|++++|.-++
T Consensus 22 ~Pyg~~~a~~Al~~A~aala~g--~---eV~~VFf~~DGV~~a~~~q~p~~~~~~l~~~~~~La~~~gv~l~vC~~~a 94 (140)
T 2d1p_A 22 PAYGTQQASSAFQFAQALIADG--H---ELSSVFFYREGVYNANQLTSPASDEFDLVRAWQQLNAQHGVALNICVAAA 94 (140)
T ss_dssp CSSSSSHHHHHHHHHHHHHHTT--C---EEEEEEECGGGGGGGBTTCCCCTTSCCHHHHHHHHHHHHCCEEEEEHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCC--C---ccCEEEEechHHHHHhcCCCCccccCChHHHHHHHHHHcCCEEEEeHHHH
Confidence 4667778899999999998752 2 45 444443 11 12224566777777 88899999987543
No 409
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.91 E-value=28 Score=21.73 Aligned_cols=20 Identities=35% Similarity=0.835 Sum_probs=14.7
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 11 ~~~C~~C~k~f~~~~~L~~H 30 (42)
T 2en2_A 11 PYKCETCGARFVQVAHLRAH 30 (42)
T ss_dssp SEECTTTCCEESSHHHHHHH
T ss_pred CEeCCCcChhhCCHHHHHHH
Confidence 34566788888888888764
No 410
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*
Probab=22.81 E-value=2.5e+02 Score=28.91 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=46.5
Q ss_pred EEEEcCCCCCCccCHH-HHHHHHHh-----CCcEEEEEEecchHHHHHHHHHHhCCEEEEecChhhHHHHH
Q 014440 193 LILYSALSTCDPGDIM-ETIQKCKE-----SKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELI 257 (424)
Q Consensus 193 LvI~ss~~t~dp~~i~-~~i~~akk-----~~IrV~vIgLg~e~~iLq~iA~~TGG~Y~~~~d~~~L~~lL 257 (424)
|.|+||- |+|= +|++-+++ .+.+|..++-|..+..|.+.|.+.+=.|.+..|++...++-
T Consensus 80 I~ILGST-----GSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v~v~d~~~~~~L~ 145 (488)
T 3au8_A 80 VAIFGST-----GSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIHDKSVYEELK 145 (488)
T ss_dssp EEEETTT-----SHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCSEEEESCGGGTHHHH
T ss_pred EEEEccC-----cHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHH
Confidence 5566652 4453 56777766 67888888888899999999999999999998888765553
No 411
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=22.65 E-value=1.1e+02 Score=28.88 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=38.3
Q ss_pred cEEEEEEcCCCCCCccCHHHHHHHHHhCCcEEEEEEecc----hHHHHHHHHHHhCCEE
Q 014440 190 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA----EMFICKHLCQETGGTY 244 (424)
Q Consensus 190 reILvI~ss~~t~dp~~i~~~i~~akk~~IrV~vIgLg~----e~~iLq~iA~~TGG~Y 244 (424)
++|+|+.|..++ -||=..++..|...|.+|.++-++. +.....++++..|+..
T Consensus 80 ~~VlVlcG~GNN--GGDGlv~AR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~g~~~ 136 (265)
T 2o8n_A 80 PTVLVICGPGNN--GGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPF 136 (265)
T ss_dssp CEEEEEECSSHH--HHHHHHHHHHHHHTTCEEEEECCSCCSSHHHHHHHHHHHHTTCCB
T ss_pred CeEEEEECCCCC--HHHHHHHHHHHHHCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCcE
Confidence 478888886543 4677888999999999999987653 2344556666777764
No 412
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.48 E-value=30 Score=22.16 Aligned_cols=20 Identities=35% Similarity=0.874 Sum_probs=15.0
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2em3_A 12 PYECKVCSKAFTQKAHLAQH 31 (46)
T ss_dssp SEECSSSCCEESSHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHH
Confidence 34566788888888888764
No 413
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.44 E-value=34 Score=26.43 Aligned_cols=22 Identities=41% Similarity=1.096 Sum_probs=16.0
Q ss_pred eecCCccccCeEEcCCCCccccCC
Q 014440 293 SCHKEVKIGVGYTCPRCKARVCEL 316 (424)
Q Consensus 293 ~CH~~~~~~~Gy~Cp~C~s~~C~l 316 (424)
.|-.++... ||.| +|+-.||.-
T Consensus 30 ~C~kkvgL~-~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 30 SCNKKVGVT-GFKC-RCGSTFCGT 51 (74)
T ss_dssp SSCCBCTTT-CEEC-TTSCEECTT
T ss_pred hhcCccccc-ceEe-ccCCEeccc
Confidence 355555556 8999 899999863
No 414
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=22.37 E-value=69 Score=30.48 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=22.9
Q ss_pred eeeecCCccccCeEEcCCCCccccC-------------CCCCCCCCCcee
Q 014440 291 ICSCHKEVKIGVGYTCPRCKARVCE-------------LPTECRICGLQL 327 (424)
Q Consensus 291 ~C~CH~~~~~~~Gy~Cp~C~s~~C~-------------lP~~C~~C~l~L 327 (424)
.--+|.++. -..|+.|+..+-. .++.|+.||-.|
T Consensus 127 v~elHG~~~---~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~l 173 (289)
T 1q1a_A 127 IIEAHGSFA---HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 173 (289)
T ss_dssp EEETTEEEE---EEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBE
T ss_pred EEEecCCcC---ceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEE
Confidence 455676542 3479999876531 467999999754
No 415
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=22.31 E-value=30 Score=22.17 Aligned_cols=20 Identities=40% Similarity=0.707 Sum_probs=14.6
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emj_A 12 PFECAECGKSFSISSQLATH 31 (46)
T ss_dssp SEECSSSSCEESSHHHHHHH
T ss_pred CEECCCCCcccCCHHHHHHH
Confidence 34566788888888888764
No 416
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=22.19 E-value=1.5e+02 Score=27.46 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHcC
Q 014440 169 SIQNALDLVHGLLNQ 183 (424)
Q Consensus 169 sL~~AL~~Al~~L~~ 183 (424)
.+..|+++|++.++.
T Consensus 21 ~~~~g~~~a~~~iN~ 35 (356)
T 3ipc_A 21 QIQKGAEQAAKDINA 35 (356)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344455555555544
No 417
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=21.99 E-value=19 Score=29.26 Aligned_cols=33 Identities=24% Similarity=0.731 Sum_probs=28.0
Q ss_pred cceeeecCCccccCeEEcCCCCccccCCCCCCCCCCcee
Q 014440 289 ISICSCHKEVKIGVGYTCPRCKARVCELPTECRICGLQL 327 (424)
Q Consensus 289 ~a~C~CH~~~~~~~Gy~Cp~C~s~~C~lP~~C~~C~l~L 327 (424)
.++-.||. .|.|=.|++..=.....|++|+..|
T Consensus 39 k~LV~C~d------HYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 39 KGLVECNN------HYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp SSEEECSS------CEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred CCeeeecc------hhhHHHHHHHHHhhccCCcccCCcC
Confidence 45556663 8999999999999999999999875
No 418
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.93 E-value=31 Score=22.00 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=14.8
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eow_A 12 PYKCNECGKAFRARSSLAIH 31 (46)
T ss_dssp CEECTTSCCEESSHHHHHHH
T ss_pred CeeccccCChhcCHHHHHHH
Confidence 34566788888888888764
No 419
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=41 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2en9_A 11 KLFKCNECKKTFTQSSSLTVH 31 (46)
T ss_dssp CCCBCTTTCCBCSSHHHHHHH
T ss_pred CCEECCccCcccCCHHHHHHH
Confidence 345677888899888888764
No 420
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=21.49 E-value=53 Score=23.53 Aligned_cols=32 Identities=31% Similarity=0.717 Sum_probs=20.6
Q ss_pred EEc--CCCCcccc--------------CCCCCCCC--CCceecCchhHHh
Q 014440 304 YTC--PRCKARVC--------------ELPTECRI--CGLQLVSSPHLAR 335 (424)
Q Consensus 304 y~C--p~C~s~~C--------------~lP~~C~~--C~l~Lvs~phLar 335 (424)
|.| +.|+..|- +-|-.|+. |+..+.+...|.+
T Consensus 2 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~ 51 (85)
T 2j7j_A 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR 51 (85)
T ss_dssp EECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHH
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHH
Confidence 667 66766543 34556766 7777777776655
No 421
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.47 E-value=27 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=14.8
Q ss_pred EEcCCCCccccCCCC----CCCCCCce
Q 014440 304 YTCPRCKARVCELPT----ECRICGLQ 326 (424)
Q Consensus 304 y~Cp~C~s~~C~lP~----~C~~C~l~ 326 (424)
.+||+|++..-.-.. .|+.||+.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLA 35 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCce
Confidence 688988885443222 57777765
No 422
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=21.46 E-value=64 Score=20.55 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=20.5
Q ss_pred eEEcCCCCccccCCCCCCCCCCce
Q 014440 303 GYTCPRCKARVCELPTECRICGLQ 326 (424)
Q Consensus 303 Gy~Cp~C~s~~C~lP~~C~~C~l~ 326 (424)
++.||.|-.+.=..-..|.+|+..
T Consensus 8 ~W~C~~CT~~N~~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 8 QWNCTACTFLNHPALIRCEQCEMP 31 (34)
T ss_dssp CEECTTTCCEECTTCSBCTTTCCB
T ss_pred cCCCCCCccccCCCCCeeCCCCCc
Confidence 789999998887777899999864
No 423
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=21.35 E-value=23 Score=27.00 Aligned_cols=40 Identities=28% Similarity=0.639 Sum_probs=27.7
Q ss_pred CCceeecccccccCCCCCCceeeCCCcCcc-cccccchhhhccCCCCCCCCCC
Q 014440 362 RSTCFGCQQSLLASGNKAGLCVACPKCKKH-FCLECDIYIHESLHNCPGCESL 413 (424)
Q Consensus 362 ~~~C~~C~~~~~~~~~~~~~~~~C~~C~~~-fC~dCd~fihe~lh~CPgC~~~ 413 (424)
...|.-|...+.+. .+ -.|++. ||.+|-.- +..||.|-..
T Consensus 18 ~~~C~IC~~~~~~~------v~--~pCgH~~~C~~C~~~----~~~CP~Cr~~ 58 (79)
T 2yho_A 18 AMLCMVCCEEEINS------TF--CPCGHTVCCESCAAQ----LQSCPVCRSR 58 (79)
T ss_dssp HTBCTTTSSSBCCE------EE--ETTCBCCBCHHHHTT----CSBCTTTCCB
T ss_pred CCEeEEeCcccCcE------EE--ECCCCHHHHHHHHHh----cCcCCCCCch
Confidence 34799998555321 22 269998 99999763 4599999753
No 424
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=20.87 E-value=2.3e+02 Score=25.72 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHhCCcEEEEEEecchHHHHHHHHHHhCCEEEEe---cChhhHHHHHH
Q 014440 209 ETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVA---LDESHSKELIL 258 (424)
Q Consensus 209 ~~i~~akk~~IrV~vIgLg~e~~iLq~iA~~TGG~Y~~~---~d~~~L~~lL~ 258 (424)
.+++.+.+.|.+|.+++.......++++.+..+...++. .|.+.++.++.
T Consensus 43 ~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 43 GIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp HHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHH
Confidence 456666677776666655543456666666555544433 33444444443
No 425
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.79 E-value=29 Score=21.95 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=14.4
Q ss_pred CCCCCCCCceecCchhHHhh
Q 014440 317 PTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 317 P~~C~~C~l~Lvs~phLars 336 (424)
|-.|+.|+..+....+|.+-
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H 31 (44)
T 2eox_A 12 SYNCNECGKAFTRIFHLTRH 31 (44)
T ss_dssp CEEETTTTEEESSSHHHHTT
T ss_pred CeECcccCcccCCHHHHHHH
Confidence 34566788888888888764
No 426
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.78 E-value=43 Score=21.43 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=16.4
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2eom_A 11 RGHRCSDCGKFFLQASNFIQH 31 (46)
T ss_dssp SSCCCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCCCCCeeCChHHHHHH
Confidence 355788899999988888764
No 427
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=20.70 E-value=3.3e+02 Score=25.43 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=36.0
Q ss_pred CcEEEEEEcCCCCCCccCH-HHHHHHHHhCCcEEEEEEecchHHHHHHHHHHhCCEEE-E---ecChhhHHHHHH
Q 014440 189 HREVLILYSALSTCDPGDI-METIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYS-V---ALDESHSKELIL 258 (424)
Q Consensus 189 ~reILvI~ss~~t~dp~~i-~~~i~~akk~~IrV~vIgLg~e~~iLq~iA~~TGG~Y~-~---~~d~~~L~~lL~ 258 (424)
..+++||+|+.. .| ..+++.+.+.|-+|.+++.. ..-|++++++.||... + +.|.+..+.++.
T Consensus 28 ~gKvalVTGas~-----GIG~aiA~~la~~Ga~V~i~~r~--~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 95 (273)
T 4fgs_A 28 NAKIAVITGATS-----GIGLAAAKRFVAEGARVFITGRR--KDVLDAAIAEIGGGAVGIQADSANLAELDRLYE 95 (273)
T ss_dssp TTCEEEEESCSS-----HHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCcCC-----HHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHH
Confidence 346777777521 23 35677788888877766654 3445666666665332 2 244455554443
No 428
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.67 E-value=44 Score=21.35 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=16.0
Q ss_pred CCCCCCCCCceecCchhHHhh
Q 014440 316 LPTECRICGLQLVSSPHLARS 336 (424)
Q Consensus 316 lP~~C~~C~l~Lvs~phLars 336 (424)
-|-.|+.|+..+....+|.+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHLAGH 31 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHHH
Confidence 355778889998888888764
No 429
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.58 E-value=1.2e+02 Score=28.68 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=35.2
Q ss_pred ccCHHHHHHHHHhCCcEEEEEEecchHHHHHHHHHHhCCEEEEe
Q 014440 204 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVA 247 (424)
Q Consensus 204 p~~i~~~i~~akk~~IrV~vIgLg~e~~iLq~iA~~TGG~Y~~~ 247 (424)
|.++.++++.+++.+|++-.+--.....+.+.||+.||+.-...
T Consensus 223 ~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 266 (291)
T 1pq4_A 223 AQELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELL 266 (291)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEE
Confidence 44677899999999998766655556789999999999987653
No 430
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.56 E-value=22 Score=25.71 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=15.9
Q ss_pred eEEcCCCCcccc--C--CCCCCCCCCceecC
Q 014440 303 GYTCPRCKARVC--E--LPTECRICGLQLVS 329 (424)
Q Consensus 303 Gy~Cp~C~s~~C--~--lP~~C~~C~l~Lvs 329 (424)
-.+||.|++..= . ---.|..||.+...
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~~ 48 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTEFK 48 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCEEC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEEEe
Confidence 577888887331 0 11267777777543
No 431
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.14 E-value=35 Score=24.40 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=17.8
Q ss_pred Cceeeccc--------ccccCCCCCCceeeCCCcCccc
Q 014440 363 STCFGCQQ--------SLLASGNKAGLCVACPKCKKHF 392 (424)
Q Consensus 363 ~~C~~C~~--------~~~~~~~~~~~~~~C~~C~~~f 392 (424)
..|..|.. ++.+.+......|.|.+|++.+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 46888842 2212223345679999998753
Done!