BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014441
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 60 MDYLSDFPVGKKLQLP---SFRDCLKERGTVQMLTMGREAAIEVQSLVSVL 107
MDYL+++P+ + LP S+R L ++G + +L + E++S ++L
Sbjct: 321 MDYLNEYPIAVNVTLPNATSYRFVLVQKGPIGVLLDAPKVNGEIRSPTNIL 371
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 135 DTINLFT----YAVLRLSPNALSSGV-NSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYH 189
DT+ +F+ YA+ +P+AL+ V N++ +G S FVS GPVS ++
Sbjct: 123 DTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLP 182
Query: 190 SSDTSPVG----NNINRVTRALQHGK 211
+S +G + I++V + + K
Sbjct: 183 ASGAPQMGAAPDDAIDQVAKLIAQAK 208
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 162 IRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPV-GNNINRVTRALQHGKWYKGKDGFL 220
I S S+ G LTH V+ + H+ D P+ GN ++ T L ++ G F
Sbjct: 197 IMNSSGSTGLPKGVQLTHENIVT-RFSHARD--PIYGNQVSPGTAVLTVVPFHHGFGMF- 252
Query: 221 VTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIP-VSSILN 271
+G L+C V L + +E +L Q T ++L+P + +ILN
Sbjct: 253 ------TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 162 IRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPV-GNNINRVTRALQHGKWYKGKDGFL 220
I S S+ G LTH V+ + H+ D P+ GN ++ T L ++ G F
Sbjct: 197 IMNSSGSTGLPKGVQLTHENIVT-RFSHARD--PIYGNQVSPGTAVLTVVPFHHGFGMF- 252
Query: 221 VTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIP-VSSILN 271
+G L+C V L + +E +L Q T ++L+P + +ILN
Sbjct: 253 ------TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 162 IRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPV-GNNINRVTRALQHGKWYKGKDGFL 220
I S S+ G LTH V+ + H+ D P+ GN ++ T L ++ G F
Sbjct: 197 IMNSSGSTGLPKGVQLTHENIVT-RFSHARD--PIYGNQVSPGTAVLTVVPFHHGFGMF- 252
Query: 221 VTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIP-VSSILN 271
+G L+C V L + +E +L Q T ++L+P + +ILN
Sbjct: 253 ------TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,007,283
Number of Sequences: 62578
Number of extensions: 469891
Number of successful extensions: 894
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 12
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)