Query 014441
Match_columns 424
No_of_seqs 69 out of 71
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hql_A Hypothetical protein Mg 37.1 7.8 0.00027 32.2 0.2 17 207-223 17-33 (110)
2 1pm4_A YPM; jelly roll fold, t 28.4 57 0.0019 27.1 4.0 29 367-400 15-43 (119)
3 2i2j_A Signaling peptide UA159 25.1 24 0.00084 22.3 1.0 16 29-44 6-21 (26)
4 1ri9_A FYN-binding protein; SH 25.0 52 0.0018 27.6 3.3 29 367-396 64-92 (102)
5 2ji4_A Phosphoribosyl pyrophos 14.9 72 0.0025 32.0 2.3 93 311-416 13-113 (379)
6 2j3w_A Sedlin, trafficking pro 10.7 3.3E+02 0.011 23.1 5.0 47 17-64 94-141 (142)
7 3cue_A Transport protein parti 9.3 4.4E+02 0.015 24.7 5.6 47 15-62 170-218 (219)
8 1w1g_A HPDK1, 3-phosphoinositi 8.9 7.3E+02 0.025 21.8 6.6 20 311-330 75-94 (151)
9 2dk7_A Transcription elongatio 8.6 1.6E+02 0.0054 23.3 1.9 18 379-396 21-38 (73)
10 1zc3_B Exocyst complex protein 7.9 1.3E+02 0.0043 24.8 1.1 14 118-131 29-42 (113)
No 1
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=37.11 E-value=7.8 Score=32.23 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.9
Q ss_pred cccCcccccCCCceeec
Q 014441 207 LQHGKWYKGKDGFLVTD 223 (424)
Q Consensus 207 l~~~~~~~~~~Gflvt~ 223 (424)
+.+.+|++.|.||+||-
T Consensus 17 IeS~kWS~kKTGF~VTI 33 (110)
T 2hql_A 17 IESSCWSVKKTGFLVTI 33 (110)
T ss_dssp EEEEEECTTCSEEEEEE
T ss_pred eehhcccccCceEEEEE
Confidence 58899999999999773
No 2
>1pm4_A YPM; jelly roll fold, toxin; 1.75A {Yersinia pseudotuberculosis} SCOP: b.135.1.1 PDB: 1poq_A
Probab=28.45 E-value=57 Score=27.11 Aligned_cols=29 Identities=34% Similarity=0.395 Sum_probs=22.3
Q ss_pred CcceEEEeecCCeEEEEeecCCeEEEEEEecCcc
Q 014441 367 KDLEVSIRAKNNAWAIARITGGKELYMVLEKASE 400 (424)
Q Consensus 367 ~d~EiivKt~nD~WVV~r~s~~RElYVvL~qk~~ 400 (424)
.-+|+||+..-+- +++|-|||.||..-|+
T Consensus 15 gkgevci~gnkeg-----k~rggelyavl~stn~ 43 (119)
T 1pm4_A 15 GKGEVCIIGNKEG-----KTRGGELYAVLHSTNV 43 (119)
T ss_dssp TTCEEEEEESTTC-----CCCCEEEEEEEECSCT
T ss_pred cceeEEEEeCccc-----cccCcEEEEEEeecCC
Confidence 3489999876552 6899999999985443
No 3
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=25.14 E-value=24 Score=22.31 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.9
Q ss_pred HHHHHhcccHHHhhcc
Q 014441 29 SLFVMFYGSIRAMLEK 44 (424)
Q Consensus 29 ~mfrlF~Gs~~~~le~ 44 (424)
-.|||||-+|..+|.+
T Consensus 6 tffrlfnrsftqalgk 21 (26)
T 2i2j_A 6 TFFRLFNRSFTQALGK 21 (26)
T ss_pred HHHHHHhHHHHHHhcc
Confidence 4699999999999875
No 4
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.01 E-value=52 Score=27.64 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=23.8
Q ss_pred CcceEEEeecCCeEEEEeecCCeEEEEEEe
Q 014441 367 KDLEVSIRAKNNAWAIARITGGKELYMVLE 396 (424)
Q Consensus 367 ~d~EiivKt~nD~WVV~r~s~~RElYVvL~ 396 (424)
+..|||=+|. +-|+.+|.++|+-=||-.+
T Consensus 64 E~LeVI~~~e-~~wwLcRNs~GkyGyVP~~ 92 (102)
T 1ri9_A 64 ESLEVIQTTD-DTKVLCRNEEGKYGYVLRS 92 (102)
T ss_dssp CBCEEEEESS-SSEEEEEETTTEEEEEEGG
T ss_pred CEEEEEEeCC-CCEEEEECCCCCCCceeHH
Confidence 4577777776 5899999999999999766
No 5
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=14.89 E-value=72 Score=31.97 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=42.0
Q ss_pred CCeeEEEEcCccccccCCCCCCcc--ccCHHHHHHHHHHHhhhhhhhhhhhccCCCCCCcceEEEeecCCeEEEEeecCC
Q 014441 311 SGYRYLLVDGDRNISRASPPGKVT--TLAKESLLALSKLRDEVDLEKSRAKRDNAGCEKDLEVSIRAKNNAWAIARITGG 388 (424)
Q Consensus 311 ~~yKYlyfN~mnla~rasp~~kv~--tl~~esl~~l~~l~~di~~e~sr~~~~~~~~~~d~EiivKt~nD~WVV~r~s~~ 388 (424)
-|.-|+||-.||.+.+. .++- +=+++......+|.+.++.+..+.. ...-.|+|+-|+-..+ -+|
T Consensus 13 ~~~~~~~~~~~~~~~~~---~~if~g~~~~~la~~~~~ia~~lg~~l~~~~---~~~F~dGE~~v~i~es-------vrg 79 (379)
T 2ji4_A 13 LGTENLYFQSMNITKGG---LVLFSANSNSSCMELSKKIAERLGVEMGKVQ---VYQEPNRETRVQIQES-------VRG 79 (379)
T ss_dssp ----------------C---CEEEECCCSGGGGHHHHHHHHHHTCCCCCEE---EEECTTSCEEEEECSC-------CTT
T ss_pred cchhhhhhhhcccccCC---EEEEECCCCHHHHHhHHHHHHHhCCceEeeE---EEECCCCCEEEEeCCC-------cCC
Confidence 45679999999875432 2221 1234433222234444444332221 1123589999986653 478
Q ss_pred eEEEEEEecC---ccchhhH---HHHHHHHHHhh
Q 014441 389 KELYMVLEKA---SETLLYA---SDAVEKFSNRY 416 (424)
Q Consensus 389 RElYVvL~qk---~~~Llei---sdevkk~~~~~ 416 (424)
+.+|||-... |++|.|. -|++|+-+++-
T Consensus 80 ~dV~iiqs~~~~~nd~lmeLl~~idA~k~asA~r 113 (379)
T 2ji4_A 80 KDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS 113 (379)
T ss_dssp CEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHhcCCce
Confidence 9999987742 5666665 78888877653
No 6
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=10.67 E-value=3.3e+02 Score=23.06 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHH-hcccHHHhhccCCChhHHHHhhhHHHHHhhh
Q 014441 17 IDALRKVLKEVHSLFVM-FYGSIRAMLEKDPSGGLIRSHLYPFIMDYLS 64 (424)
Q Consensus 17 d~~l~~vLkq~Y~mfrl-F~Gs~~~~le~~~s~~llr~~L~~F~~~YL~ 64 (424)
+...+.+|+++|.+|.= ..-||-.. +..=.-+.-.++++.++.+||.
T Consensus 94 ~~~i~~~~~~iy~~Y~~~v~NPfy~~-~~pI~s~~Fd~~v~~~~~~~l~ 141 (142)
T 2j3w_A 94 EDGIKNFFTDVYDLYIKFAMNPFYEP-NSPIRSSAFDRKVQFLGKKHLL 141 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCT-TCCCCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCC-CCceecHHHHHHHHHHHHHhcc
Confidence 67788999999998861 11333221 1101235567888888888863
No 7
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=9.30 E-value=4.4e+02 Score=24.75 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cccHHHhhccCCChhHHHHhhhHHHHHh
Q 014441 15 WRIDALRKVLKEVHSLFVMF--YGSIRAMLEKDPSGGLIRSHLYPFIMDY 62 (424)
Q Consensus 15 ~~d~~l~~vLkq~Y~mfrlF--~Gs~~~~le~~~s~~llr~~L~~F~~~Y 62 (424)
++|...+.+|+++|.+|.=+ .-||-.. +..=.-++-+.+++.++..|
T Consensus 170 l~e~~ir~ff~~VYelYvd~VmkNPFY~~-~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 170 LAIQIADNFLRKVYCLYSDYVMKDPSYSM-EMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCT-TSCCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCccccHHHHHHHHHHHHhc
Confidence 47799999999999999821 1222111 11012244566666666543
No 8
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=8.86 E-value=7.3e+02 Score=21.83 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=14.1
Q ss_pred CCeeEEEEcCccccccCCCC
Q 014441 311 SGYRYLLVDGDRNISRASPP 330 (424)
Q Consensus 311 ~~yKYlyfN~mnla~rasp~ 330 (424)
.++|++|+|..+...|-.++
T Consensus 75 ~~PrL~Yvdp~~~~~KGeIp 94 (151)
T 1w1g_A 75 EGPHLYYVDPVNKVLKGEIP 94 (151)
T ss_dssp TTTEEEEEETTTTEEEEEEC
T ss_pred CCceEEEEcCccccccceEe
Confidence 46788999888666665544
No 9
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.62 E-value=1.6e+02 Score=23.32 Aligned_cols=18 Identities=6% Similarity=0.322 Sum_probs=15.3
Q ss_pred eEEEEeecCCeEEEEEEe
Q 014441 379 AWAIARITGGKELYMVLE 396 (424)
Q Consensus 379 ~WVV~r~s~~RElYVvL~ 396 (424)
-|++.+..|||.||-=-+
T Consensus 21 ~W~~v~T~dGR~fyyN~~ 38 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPT 38 (73)
T ss_dssp SCEEEEESSSCEEEEETT
T ss_pred CcEEEECCCCCEEEecCc
Confidence 699999999999996443
No 10
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=7.93 E-value=1.3e+02 Score=24.82 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=11.8
Q ss_pred EEEeeccceeecCC
Q 014441 118 SMILFHDLLVSTTL 131 (424)
Q Consensus 118 t~~Ly~D~LVwSgL 131 (424)
-+|||||.||-+.-
T Consensus 29 ~~FLfND~Ll~a~~ 42 (113)
T 1zc3_B 29 HGFLMNDCLLVATW 42 (113)
T ss_dssp EEEEESSEEEEEEE
T ss_pred EEEecCCEEEEEEE
Confidence 48999999998853
Done!