BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014443
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QBQ|B Chain B, Crystal Structure Of Extracellular Domains Of Mouse
           Rank-Rankl Complex
 pdb|3QBQ|D Chain D, Crystal Structure Of Extracellular Domains Of Mouse
           Rank-Rankl Complex
          Length = 170

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 141 CSVGEVIIHVDPENHEWPRRI 161
           C  G+ ++ VDP NH  PRR 
Sbjct: 62  CDAGKALVAVDPGNHTAPRRC 82


>pdb|3ME2|R Chain R, Crystal Structure Of Mouse Rankl-Rank Complex
 pdb|3ME4|A Chain A, Crystal Structure Of Mouse Rank
 pdb|3ME4|B Chain B, Crystal Structure Of Mouse Rank
          Length = 216

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 141 CSVGEVIIHVDPENHEWPRRI 161
           C  G+ ++ VDP NH  PRR 
Sbjct: 91  CDAGKALVAVDPGNHTAPRRC 111


>pdb|4GIQ|R Chain R, Crystal Structure Of Mouse Rank Bound To Rankl
          Length = 174

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 141 CSVGEVIIHVDPENHEWPRRI 161
           C  G+ ++ VDP NH  PRR 
Sbjct: 63  CDAGKALVAVDPGNHTAPRRC 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,063,275
Number of Sequences: 62578
Number of extensions: 459305
Number of successful extensions: 838
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 3
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)