Query 014443
Match_columns 424
No_of_seqs 222 out of 401
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568 Predicted membrane pro 100.0 3.6E-95 8E-100 749.7 35.5 391 23-423 11-403 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 2E-56 4.4E-61 442.8 29.3 243 180-422 1-249 (295)
3 KOG2569 G protein-coupled seve 100.0 3E-34 6.6E-39 285.4 3.5 233 175-416 123-373 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.3 2.5E-10 5.5E-15 111.6 22.2 205 200-407 2-215 (257)
5 KOG4290 Predicted membrane pro 97.9 0.0004 8.8E-09 70.5 16.6 183 213-405 160-349 (429)
6 KOG2569 G protein-coupled seve 58.0 11 0.00024 39.4 3.7 84 177-260 296-393 (440)
7 COG4393 Predicted membrane pro 57.9 2.4E+02 0.0052 29.3 15.2 68 348-417 190-262 (405)
8 PF06664 MIG-14_Wnt-bd: Wnt-bi 57.6 2.1E+02 0.0045 28.5 24.5 138 248-395 79-229 (298)
9 PF09437 Pombe_5TM: Pombe spec 56.6 3.1 6.7E-05 38.8 -0.5 139 176-327 36-188 (256)
10 PF06123 CreD: Inner membrane 51.1 69 0.0015 34.1 8.4 81 175-260 239-332 (430)
11 KOG1734 Predicted RING-contain 38.0 75 0.0016 31.9 5.8 59 362-420 89-164 (328)
12 CHL00043 cemA envelope membran 34.9 40 0.00087 33.5 3.4 42 345-387 209-250 (261)
13 PF13491 DUF4117: Domain of un 34.5 3.3E+02 0.0072 24.2 10.2 67 206-272 41-108 (171)
14 PRK11715 inner membrane protei 34.3 2E+02 0.0043 30.8 8.7 80 175-260 246-338 (436)
15 PF03040 CemA: CemA family; I 32.2 38 0.00082 33.1 2.7 42 345-387 178-219 (230)
16 PRK02507 proton extrusion prot 29.3 54 0.0012 34.8 3.5 41 345-386 370-410 (422)
17 TIGR02908 CoxD_Bacillus cytoch 24.9 4.6E+02 0.01 22.8 9.4 49 251-299 50-98 (110)
18 TIGR00739 yajC preprotein tran 24.5 89 0.0019 25.6 3.3 27 363-389 5-31 (84)
19 KOG2678 Predicted membrane pro 22.7 1.2E+02 0.0025 29.7 4.1 29 393-421 207-235 (244)
20 PF03597 CcoS: Cytochrome oxid 20.8 93 0.002 22.6 2.4 19 360-378 2-20 (45)
21 PRK05585 yajC preprotein trans 20.8 1.4E+02 0.0031 25.5 3.9 27 361-387 18-44 (106)
22 PF02699 YajC: Preprotein tran 20.6 1.3E+02 0.0028 24.4 3.5 23 363-385 4-26 (82)
23 PF13268 DUF4059: Protein of u 20.4 4.4E+02 0.0096 21.2 6.2 46 372-421 22-68 (72)
24 PRK06265 cobalt transport prot 20.3 6.4E+02 0.014 23.7 8.6 35 231-265 15-49 (199)
No 1
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.6e-95 Score=749.72 Aligned_cols=391 Identities=48% Similarity=0.821 Sum_probs=373.4
Q ss_pred hhhcceeeeeeccCCCccCCCCeEEEecCcceeeccCCCCCCCCCCCCCCCCCCceeEEeeeEeecCccccccccccccc
Q 014443 23 LITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDKPLKGKSFIRFETVTFVRPKESASKQNEMQTI 102 (424)
Q Consensus 23 ~~~~~~~~~h~y~~~~f~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~s~I~f~~~~f~~~~~~~~~~~~~~~~ 102 (424)
+.+.+..++|+|..++|....|++.+|||+||+|++.. +|+.++..| .|+|||+++++.|+++.++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ys~~~---~d~~~s~~p---~~~~~f~~~t~~~~~~~~~~~n~---- 80 (518)
T KOG2568|consen 11 ISLLAWLSFLSYVYSEFASELNAQHFHGVSEGIYSSFV---SDLFGSLDP---ESFIRFDSITLVRTSESADEQNS---- 80 (518)
T ss_pred HHHhhhHhheechhhhhhhhhcceeeeccccccccccH---HHhcCCCCc---cccccceeEEEEEccCccccccc----
Confidence 33445899999999999999999999999999999854 577777666 89999999999999987665554
Q ss_pred cceEEEEEEeeccccccCCcCC-CCceeecCcccccCCCCCCCCEEecCCCCCCCCceeeeeeeccCcccccc-ceeEEe
Q 014443 103 TGMVEAIILEVKERERIGGSFL-KTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQI-SEEVEI 180 (424)
Q Consensus 103 ~g~v~~vIfe~~D~~~iG~~~~-g~~~~cC~~~~~~~g~C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~y~V 180 (424)
.|.|+++||||||+++||++++ |++.||||+++++.|.|++|++|+.|+++||.||++..+.+++++.+..+ +..|+|
T Consensus 81 ~~~v~~~ife~kd~~~iG~~~~~~e~~~~C~~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~~~~I 160 (518)
T KOG2568|consen 81 NGLVEALIFEFKDRNKIGGSDDDGEKLYICTPDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPPAYPI 160 (518)
T ss_pred ccceeeeeeehhhhhccCCcCCCCceEEecCHhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCceEEe
Confidence 5899999999999999999998 89999999999999999999999999999999999999999998888888 999999
Q ss_pred CccceEEEEEEEeCCCCCceEEEEEEEEECCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 014443 181 ERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITG 260 (424)
Q Consensus 181 ~ktG~Y~v~~~~C~~~~~~~~~~g~v~fkN~yGyLpa~~~pll~fY~~m~i~Y~~l~i~W~~~~~k~rk~ll~lq~~I~a 260 (424)
+|||+||+++.+|+++.++.+.+|+|+||||||||||+++|++|||++|+++|.+++++|+++++|||||++|||+||++
T Consensus 161 ~ktG~Y~v~~~~~~~s~~~~~~~~~v~wkNpyGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~ 240 (518)
T KOG2568|consen 161 KKTGYYCVYFISCDSSLESYKATGSVNWKNPYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITA 240 (518)
T ss_pred ccCcEEEEEEEeecCccccccccceEEEECCCCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccceeeccCcceeeEEeehhHHHHHH
Q 014443 261 VIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVAS 340 (424)
Q Consensus 261 vi~l~~~e~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~~~~~kv~~l~v~yfv~s 340 (424)
+++|+|+|++++|.+|.+.|.+|.++++.++++++++|+|+|++|+|+|+||||||||||+||+.+.|+..+++.||+++
T Consensus 241 Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s 320 (518)
T KOG2568|consen 241 VIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIAS 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014443 341 EALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIG 420 (424)
Q Consensus 341 ~~l~v~~~v~~~~d~s~~~~l~~~lpla~~~a~f~vWi~~SL~~T~~~Lk~~rq~~KL~lYr~f~~~li~~vv~s~~fi~ 420 (424)
+++++++++++++|.++...++.++|+|+++++|++|||+||++|+|+||.|||++||+|||||+++++++|++|++|++
T Consensus 321 ~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~ 400 (518)
T KOG2568|consen 321 EILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFIL 400 (518)
T ss_pred HHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc
Q 014443 421 FEL 423 (424)
Q Consensus 421 ~~~ 423 (424)
||+
T Consensus 401 ~~~ 403 (518)
T KOG2568|consen 401 VET 403 (518)
T ss_pred HHH
Confidence 985
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2e-56 Score=442.76 Aligned_cols=243 Identities=40% Similarity=0.743 Sum_probs=231.9
Q ss_pred eCccceEEEEEEEeCCCC----CceEEEEEEEEECCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 014443 180 IERTGMYYLYFMYCDPQL----KGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLH 255 (424)
Q Consensus 180 V~ktG~Y~v~~~~C~~~~----~~~~~~g~v~fkN~yGyLpa~~~pll~fY~~m~i~Y~~l~i~W~~~~~k~rk~ll~lq 255 (424)
|+|||+||+++++|+|+. ++.+++++++|+||||||||+|+|++|+|++|+++|++++++|++.++||||+++|+|
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih 80 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIH 80 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 689999999999998763 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccceeeccCcceeeEEeehhH
Q 014443 256 YYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLV 335 (424)
Q Consensus 256 ~~I~avi~l~~~e~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~~~~~kv~~l~v~ 335 (424)
++|+++++++++|+++++.+|++.|.+|.++.++.+++++++++|++++|+++|+||||||++||+|+++++|+.+++++
T Consensus 81 ~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~l~i~ 160 (295)
T PF06814_consen 81 YLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLMLVIL 160 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCC--ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 014443 336 YFVASEALEMFENLGNINDFS--GKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVL 413 (424)
Q Consensus 336 yfv~s~~l~v~~~v~~~~d~s--~~~~l~~~lpla~~~a~f~vWi~~SL~~T~~~Lk~~rq~~KL~lYr~f~~~li~~vv 413 (424)
|++++.+.++.+..+...|.+ .|..+++++|+++++++|++||++||++|++|||+|||++||+|||+|+++++++++
T Consensus 161 ~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~KL~lyr~f~~~li~~v~ 240 (295)
T PF06814_consen 161 YFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAKLSLYRRFYNVLIAYVV 240 (295)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888776655543 367889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 014443 414 LSIAWIGFE 422 (424)
Q Consensus 414 ~s~~fi~~~ 422 (424)
++++++.++
T Consensus 241 ~~~i~~~~~ 249 (295)
T PF06814_consen 241 FSRIFVVLS 249 (295)
T ss_pred HHHHHHHHH
Confidence 999998876
No 3
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=3e-34 Score=285.42 Aligned_cols=233 Identities=21% Similarity=0.349 Sum_probs=217.7
Q ss_pred ceeEEeCccceEEEEEEEeCCCCCceEEEEEEEEEC---CCC---CCCCcccCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 014443 175 SEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKN---PDG---YLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLW 248 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~~~~~~~~~~g~v~fkN---~yG---yLpa~~~pll~fY~~m~i~Y~~l~i~W~~~~~k~r 248 (424)
..+|+++..|.|.++++||.|.. ..++.+.++..| |+| |||+++.+++..|..|+++|+..+++|.+.++|++
T Consensus 123 ~~~~~~kd~~~y~l~f~nc~~~~-~~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~~sl~Yl~~~v~w~~l~~~sk 201 (440)
T KOG2569|consen 123 SHHYPLKDPGQYSLFFANCVPET-KGSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFDFSLLYLDFLVFWCYLLKQSK 201 (440)
T ss_pred eEEecCCCCceEEEEEeeccccc-cceEEEEEEeeeccCCCCcccccccccccCchhHHHHHHHHHHhhhheeeeEeech
Confidence 67899999999999999998764 567777777766 677 99999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccceeeccCcceee
Q 014443 249 KDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFK 328 (424)
Q Consensus 249 k~ll~lq~~I~avi~l~~~e~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~~~~~k 328 (424)
+.+++||.+|.+++.++.+..++...+++++.++|+ +++|.+..++++++|+.+.|.++.+++.||+++||.|.+++||
T Consensus 202 ~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~-~~gw~vl~yI~~~lkg~llf~tivligTgwSflk~~l~dkekk 280 (440)
T KOG2569|consen 202 SVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGT-VHGWAVLFYIFHFLKGVLLFTTIVLIGTGWSFLKPKLQDKEKK 280 (440)
T ss_pred HHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCc-eeeeeehhhHHHHHhhhhheeEEEeeccCceeechhhccccce
Confidence 999999999999999999999999999999999995 8999999999999999999999999999999999999999999
Q ss_pred EEeehhHHHHHHHHHHHHHhhcCC---------CCCCccchhhhHHHHHHHhH--HHHHHHHHHHHHHHH-HHHHHHhHH
Q 014443 329 VIFLGLVYFVASEALEMFENLGNI---------NDFSGKAKLFFVLPVTVLDV--CFILWIFSSLSRTLE-KLQMRRNLA 396 (424)
Q Consensus 329 v~~l~v~yfv~s~~l~v~~~v~~~---------~d~s~~~~l~~~lpla~~~a--~f~vWi~~SL~~T~~-~Lk~~rq~~ 396 (424)
+++++++ +|+++|++++ .||..|..++.++++.||++ ++++|+++||++|.+ |+|++++++
T Consensus 281 v~mivip-------lqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~ 353 (440)
T KOG2569|consen 281 VLMIVIP-------LQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLI 353 (440)
T ss_pred EEEEEec-------HHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcc
Confidence 9999999 8888888664 35678888999999999999 999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014443 397 KLELYRKFTNALAACVLLSI 416 (424)
Q Consensus 397 KL~lYr~f~~~li~~vv~s~ 416 (424)
||.+||+|+.++++++..+=
T Consensus 354 kL~lfrqfyi~vi~yiyftr 373 (440)
T KOG2569|consen 354 KLPLFRQFYIVVIGYIYFTR 373 (440)
T ss_pred cchHHHHHHhhhhhhhhhhh
Confidence 99999999999999987653
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.33 E-value=2.5e-10 Score=111.59 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=151.3
Q ss_pred eEEEEEEEEECCC----CCCCCcccCchhHHHHHHHHHHHHHHHHHHHH--HhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014443 200 TMIKGRTVWKNPD----GYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRF--VQLWKDIIQLHYYITGVIALGMCEVAVWY 273 (424)
Q Consensus 200 ~~~~g~v~fkN~y----GyLpa~~~pll~fY~~m~i~Y~~l~i~W~~~~--~k~rk~ll~lq~~I~avi~l~~~e~~~~~ 273 (424)
.+++-++++.|++ .|+|++|.+.+++|.++.++|.++.+.-.... .+.|+...++.+++++.+.+..+..++..
T Consensus 2 ~~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ 81 (257)
T PF10192_consen 2 LKIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNL 81 (257)
T ss_pred CceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788999996 59999999999999999999999988865444 55577889999999999999999998877
Q ss_pred HHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccceeeccCcce-eeEEeehhHHHHHHHHHHHHHhhcCC
Q 014443 274 FEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLT-FKVIFLGLVYFVASEALEMFENLGNI 352 (424)
Q Consensus 274 ~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~~~~-~kv~~l~v~yfv~s~~l~v~~~v~~~ 352 (424)
.++..+..+|.......+...+++++-+.+...+++++|.||.+.|++++... .+...+.+++.++..++.+.++....
T Consensus 82 ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 161 (257)
T PF10192_consen 82 IHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFYF 161 (257)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 77777777777777899999999999999999999999999999999998543 34445566666666667666332111
Q ss_pred CCCC--ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014443 353 NDFS--GKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNA 407 (424)
Q Consensus 353 ~d~s--~~~~l~~~lpla~~~a~f~vWi~~SL~~T~~~Lk~~rq~~KL~lYr~f~~~ 407 (424)
++.+ ....-..-.++..+-.+..+|...++.+|. +++|+..|.+-|.+|...
T Consensus 162 d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~~~t~---~~~~~~~k~~Fy~~f~~~ 215 (257)
T PF10192_consen 162 DPHSYLYFYDSWPGYILIALRIVLAIWFIYGLYQTI---SKEKDPEKRKFYLPFGII 215 (257)
T ss_pred CcccceeecccHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHH
Confidence 1110 000111122333344455667767776654 455667899999998754
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=97.94 E-value=0.0004 Score=70.50 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=119.5
Q ss_pred CC-CCCcccCchhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCchhHHH
Q 014443 213 GY-LPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITL 291 (424)
Q Consensus 213 Gy-Lpa~~~pll~fY~~m~i~Y~~l~i~W~~~~~k~rk~ll~lq~~I~avi~l~~~e~~~~~~~y~~~N~~G~~~~~~~v 291 (424)
+| .+++|-.++.+|..|.++|.++.+..+...+ |+..|.|...+.++....+...+.-.++..+.++|....-...
T Consensus 160 t~~fS~deqnlie~fll~llvY~vL~~iq~~av~---rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~~ 236 (429)
T KOG4290|consen 160 TLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT---RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFFD 236 (429)
T ss_pred ccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh---cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecC
Confidence 45 8899999999999999999999998888776 5677888777777777777666655555555566654334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCccceeeccCcceeeEEeehhHHHHHHHHHHHHHhhcC------CCCCCccchhhhHH
Q 014443 292 WAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGN------INDFSGKAKLFFVL 365 (424)
Q Consensus 292 ~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~~~~~kv~~l~v~yfv~s~~l~v~~~v~~------~~d~s~~~~l~~~l 365 (424)
.+.++.-....-...|++..++||-|+|+.-.....-+.+-.++|..+-.++...+.... ....+.|...
T Consensus 237 aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~~wds~m~wvf~~~f~~vL~~W~~tev~dv~hd~d~y~nwpG~---- 312 (429)
T KOG4290|consen 237 AAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMSRWDSPMKWVFFTSFVFVLTPWFWTEVIDVMHDNDCYNNWPGE---- 312 (429)
T ss_pred HHHHHHHHhhHHHHHHHHHHhccceEEeehhhccccccchhhhhhhhhhhheeehhhcCceeeeechhhhhccchH----
Confidence 678888888888999999999999999998875322222213332222222322222111 1123344322
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014443 366 PVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFT 405 (424)
Q Consensus 366 pla~~~a~f~vWi~~SL~~T~~~Lk~~rq~~KL~lYr~f~ 405 (424)
-+.++..++-+|-..-|+++++. .+.+-|++-|-+|.
T Consensus 313 ~viilRii~a~wflielr~~ik~---EhStkK~eFl~hfg 349 (429)
T KOG4290|consen 313 VVIILRIIVAFWFLIELRVPIKL---EHSTKKCEFLSHFG 349 (429)
T ss_pred HHHHHHHHHHHHHHHHeeeehhh---hhHHHHHHHHHHhc
Confidence 13346667778877777777653 34556777766664
No 6
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=58.01 E-value=11 Score=39.40 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=63.0
Q ss_pred eEEeCccceEE-EEEEEeCCCC-C----ceEEEEEEEEEC--------CCCCCCCcccCchhHHHHHHHHHHHHHHHHHH
Q 014443 177 EVEIERTGMYY-LYFMYCDPQL-K----GTMIKGRTVWKN--------PDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFL 242 (424)
Q Consensus 177 ~y~V~ktG~Y~-v~~~~C~~~~-~----~~~~~g~v~fkN--------~yGyLpa~~~pll~fY~~m~i~Y~~l~i~W~~ 242 (424)
+..+++||-|. .+.+-|.--. . --.+.-+++|+- ++|++.+.+.|++.|+-.+.++..-+...|+.
T Consensus 296 ~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIv 375 (440)
T KOG2569|consen 296 SIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIV 375 (440)
T ss_pred heeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhh
Confidence 56667766554 4444332100 0 124567788888 89999999999999999999998889999999
Q ss_pred HHHhhchhhHHHHHHHHH
Q 014443 243 RFVQLWKDIIQLHYYITG 260 (424)
Q Consensus 243 ~~~k~rk~ll~lq~~I~a 260 (424)
.+.+.+.+..++|+..-+
T Consensus 376 v~~l~~~~~fky~W~~~~ 393 (440)
T KOG2569|consen 376 VFALKTIAVFKYQWLSFA 393 (440)
T ss_pred hhhhhhccceeeeeHHHH
Confidence 999988999999987543
No 7
>COG4393 Predicted membrane protein [Function unknown]
Probab=57.87 E-value=2.4e+02 Score=29.31 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=39.3
Q ss_pred hhcCCCCCCccchhhhHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014443 348 NLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLS-----RTLEKLQMRRNLAKLELYRKFTNALAACVLLSIA 417 (424)
Q Consensus 348 ~v~~~~d~s~~~~l~~~lpla~~~a~f~vWi~~SL~-----~T~~~Lk~~rq~~KL~lYr~f~~~li~~vv~s~~ 417 (424)
+++-.++.+.+..-+...-++|+.. .+|.-.|.. ++..++..||+.+|.+.=+|+.-...+++++++.
T Consensus 190 fV~k~~n~~~f~iyi~~~ilaiifl--~flf~~srkrhi~~q~~~aI~krkk~a~~~n~~rl~sl~f~s~lvvf~ 262 (405)
T COG4393 190 FVAKFENKSTFYIYILFTILAIIFL--LFLFKDSRKRHIVTQKNNAILKRKKAALKNNKHRLLSLAFFSILVVFS 262 (405)
T ss_pred HHhhhccccchHHHHHHHHHHHHHH--HHHhHHHHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444456555544333223333333 333333333 3445777888888888888888777777777664
No 8
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=57.55 E-value=2.1e+02 Score=28.50 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=67.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccceeeccCcce
Q 014443 248 WKDIIQLHYYITGVIALGMCEVA-VWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLT 326 (424)
Q Consensus 248 rk~ll~lq~~I~avi~l~~~e~~-~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~~~~ 326 (424)
+++-..=|+|+.+++.+..+-.- +.++.+.. .+.....+..++....-+..++-.|++.-+-.. .-+++.
T Consensus 79 ~~~w~~EQk~~~~Ll~~lil~n~P~~~l~~~~------~~~~~~~l~~i~q~~F~~~Ll~FwL~~~~~~r~---~~~r~~ 149 (298)
T PF06664_consen 79 RRDWLLEQKWTFALLILLILYNNPFFWLSFFF------NSPFFLLLDDIFQSIFYAYLLLFWLVFFDSLRM---QNERKN 149 (298)
T ss_pred CCcchHHHHHHHHHHHHHHHHhChHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCcCc
Confidence 56778889999998888776442 22222221 012333344444444444444444444433332 111122
Q ss_pred eeE----EeehhHHHHHHHHHHHHHhhcCCCCC--Cc------cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014443 327 FKV----IFLGLVYFVASEALEMFENLGNINDF--SG------KAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRN 394 (424)
Q Consensus 327 ~kv----~~l~v~yfv~s~~l~v~~~v~~~~d~--s~------~~~l~~~lpla~~~a~f~vWi~~SL~~T~~~Lk~~rq 394 (424)
.+. +.+++..+++..+....++.....|+ +. .......+-++...+ +++|+.-..-++.++++.++.
T Consensus 150 ~~~y~~ki~~v~~~~~~~~i~~~~~~~~~~~dP~~~~~~~~~~~~~~~~~~~l~~i~~-Y~l~ll~li~rs~~~i~~~~~ 228 (298)
T PF06664_consen 150 LKFYWPKIILVGLFWLFLFIFDIWERGNQLKDPFYSIWVDDPGFNIAKAFIILAGICA-YFLYLLFLIIRSFSEIRNKRY 228 (298)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccH
Confidence 222 12344444444454554443222221 11 111222222323333 888998888888888888877
Q ss_pred H
Q 014443 395 L 395 (424)
Q Consensus 395 ~ 395 (424)
.
T Consensus 229 ~ 229 (298)
T PF06664_consen 229 F 229 (298)
T ss_pred H
Confidence 5
No 9
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=56.57 E-value=3.1 Score=38.80 Aligned_cols=139 Identities=17% Similarity=0.115 Sum_probs=77.9
Q ss_pred eeEEeCccceEEEEEEEeCCCCC--ceEEEEE---EEEECC-----CCCCCCcccCchhHHHHHHHHHHHHHHHHHHHHH
Q 014443 176 EEVEIERTGMYYLYFMYCDPQLK--GTMIKGR---TVWKNP-----DGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFV 245 (424)
Q Consensus 176 ~~y~V~ktG~Y~v~~~~C~~~~~--~~~~~g~---v~fkN~-----yGyLpa~~~pll~fY~~m~i~Y~~l~i~W~~~~~ 245 (424)
...-|++||-||+..-+-.-+-. +.++-|- -.-.|. ..|.+..|.+-. ++.+-+|+.-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggv----------llflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGV----------LLFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCce----------eehhHHHHHHHH
Confidence 45778999999998754321111 1222111 111122 135555554421 223467999999
Q ss_pred hhchhhHHHHHHHHHHHHHHHH-HHHHH-HHHhhhhcCcCCCchhHHH--HHHHHHHHHHHHHHHHHHHHHhCccceeec
Q 014443 246 QLWKDIIQLHYYITGVIALGMC-EVAVW-YFEYANFNSTGSRPMGITL--WAVTFTSVKKTVSRLLLLAVSMGYGVVRPT 321 (424)
Q Consensus 246 k~rk~ll~lq~~I~avi~l~~~-e~~~~-~~~y~~~N~~G~~~~~~~v--~~~il~a~k~tls~~LlLlVsmGYGVVkp~ 321 (424)
.+.|-++|-|+.+-.-+++... ..+-. .-+|. +...- ..--.+ ...+++.+|.-+-|+.++--++|.|+.|..
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyv-Fssec--ikyrqFysvyeiidFlRTnfyrlfviycalgfgitRTv 182 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYV-FSSEC--IKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRTV 182 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHhe-eeeEE--EEecccccHHHHHHHHHhhhhhhheeeecccccceeee
Confidence 9999999999877665544322 22222 11111 10000 000122 346889999999999999999999998754
Q ss_pred cCccee
Q 014443 322 LGGLTF 327 (424)
Q Consensus 322 L~~~~~ 327 (424)
-.-.|.
T Consensus 183 pKylmI 188 (256)
T PF09437_consen 183 PKYLMI 188 (256)
T ss_pred cceEEE
Confidence 433443
No 10
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=51.08 E-value=69 Score=34.12 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=45.8
Q ss_pred ceeEEeCccceEEEEEEEeCCCC------------CceEEEEEEEEECC-CCCCCCcccCchhHHHHHHHHHHHHHHHHH
Q 014443 175 SEEVEIERTGMYYLYFMYCDPQL------------KGTMIKGRTVWKNP-DGYLPGKMAPLMTFYGLMSLAYLVLGLAWF 241 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~~~~------------~~~~~~g~v~fkN~-yGyLpa~~~pll~fY~~m~i~Y~~l~i~W~ 241 (424)
|.+.+|+++|.---+-.+--... ....-...|++.+| +.|.-.... .=|++|.|+-.+++ +++
T Consensus 239 P~~r~i~~~GF~A~W~v~~l~r~~~q~~~~~~~~~~~~~~~~gV~l~~Pvd~Y~~~~Ra---~KYgiLFI~LTF~~-ffl 314 (430)
T PF06123_consen 239 PEEREITDSGFSAQWKVSHLARNYPQQWASDDNCPDLSASAFGVDLIEPVDHYQKSERA---VKYGILFIGLTFLA-FFL 314 (430)
T ss_pred CCCCccCCCCceeEeeehhhccchhhHhhhcccCcccccCceeEEEeccccHHHHHHHH---HHHHHHHHHHHHHH-HHH
Confidence 77889999998876644321100 01123466777777 344433333 24666666544443 233
Q ss_pred HHHHhhchhhHHHHHHHHH
Q 014443 242 LRFVQLWKDIIQLHYYITG 260 (424)
Q Consensus 242 ~~~~k~rk~ll~lq~~I~a 260 (424)
+-.. .++.++|+||.+.+
T Consensus 315 fE~~-~~~~iHpiQY~LVG 332 (430)
T PF06123_consen 315 FELL-SKLRIHPIQYLLVG 332 (430)
T ss_pred HHHH-hcCcccHHHHHHHH
Confidence 3333 35679999998765
No 11
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=75 Score=31.90 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=36.3
Q ss_pred hhHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHH--------HHHHHHHHHHHhh
Q 014443 362 FFVLPVTVLDV-----CFILWIFSSLSRTLEKLQMRRN----LAKLELYRKFTNA--------LAACVLLSIAWIG 420 (424)
Q Consensus 362 ~~~lpla~~~a-----~f~vWi~~SL~~T~~~Lk~~rq----~~KL~lYr~f~~~--------li~~vv~s~~fi~ 420 (424)
..++|+-++.- ++..|.+-+--.....+|+-|+ .+-...|+.|..+ ++++.++.++..+
T Consensus 89 m~~iPlyf~~~~~w~rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g 164 (328)
T KOG1734|consen 89 MLFIPLYFFLYMQWYRFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFG 164 (328)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678777665 7788877666666666776554 3345567766654 4555555555543
No 12
>CHL00043 cemA envelope membrane protein
Probab=34.87 E-value=40 Score=33.53 Aligned_cols=42 Identities=29% Similarity=0.526 Sum_probs=28.4
Q ss_pred HHHhhcCCCCCCccchhhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 014443 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLE 387 (424)
Q Consensus 345 v~~~v~~~~d~s~~~~l~~~lpla~~~a~f~vWi~~SL~~T~~ 387 (424)
+.++.|-.++-.....+...+|+ ++|++|=+|||+.|++..-
T Consensus 209 i~~hfGl~~n~~~I~lfVatfPV-iLDtiFKYWIFRyLNRiSP 250 (261)
T CHL00043 209 IYKHFGFAHNDQIISLLVSTFPV-ILDTIFKYWIFRYLNRVSP 250 (261)
T ss_pred HHHhcCCCcccchHHHHHHhhhH-HHHHHHHHHHHhhccCCCh
Confidence 44555554443333334556898 6999999999999987543
No 13
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=34.52 E-value=3.3e+02 Score=24.20 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=44.3
Q ss_pred EEEECCCCCCCCcc-cCchhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 014443 206 TVWKNPDGYLPGKM-APLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVW 272 (424)
Q Consensus 206 v~fkN~yGyLpa~~-~pll~fY~~m~i~Y~~l~i~W~~~~~k~rk~ll~lq~~I~avi~l~~~e~~~~ 272 (424)
.+.+|.-|-+-+.- .-.....|..+.+..++.+.|...++++|+.-.+..+++..++.+..+..++.
T Consensus 41 ~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 108 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLS 108 (171)
T ss_pred CCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34567666444332 12234778888888889999999999987665566666666666665555554
No 14
>PRK11715 inner membrane protein; Provisional
Probab=34.32 E-value=2e+02 Score=30.84 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=44.8
Q ss_pred ceeEEeCccceEEEEEE------------EeCCCCCceEEEEEEEEECC-CCCCCCcccCchhHHHHHHHHHHHHHHHHH
Q 014443 175 SEEVEIERTGMYYLYFM------------YCDPQLKGTMIKGRTVWKNP-DGYLPGKMAPLMTFYGLMSLAYLVLGLAWF 241 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~------------~C~~~~~~~~~~g~v~fkN~-yGyLpa~~~pll~fY~~m~i~Y~~l~i~W~ 241 (424)
|.+.+|+++|.--=+-. +|++.. ...-...|.|.+| +.|.-....- =|+++.|+-.++ ++++
T Consensus 246 P~~R~It~~GF~A~W~is~l~r~~~q~~~~~~~~~-~~~~~~~V~~~~PVd~Y~~~~RA~---KYgiLFI~LTF~-~fFl 320 (436)
T PRK11715 246 PAEREISESGFQAQWQVSHLARNYPQVFASGQDGN-LNLPAFGVSLIDPVDQYQKTERAV---KYAILFIALTFA-AFFL 320 (436)
T ss_pred CCCCeeCCCCeeeEeechhhcCchhhhhhhccccc-cccceeEEEEeccccHHHHHHHHH---hHHHHHHHHHHH-HHHH
Confidence 67789999998764432 222100 0124466778777 4454433333 466665554333 2333
Q ss_pred HHHHhhchhhHHHHHHHHH
Q 014443 242 LRFVQLWKDIIQLHYYITG 260 (424)
Q Consensus 242 ~~~~k~rk~ll~lq~~I~a 260 (424)
+-.. .+..++|+||.+-+
T Consensus 321 fE~~-~~~~iHpiQYlLVG 338 (436)
T PRK11715 321 FELL-KKLRIHPVQYLLVG 338 (436)
T ss_pred HHHh-cCceecHHHHHHHH
Confidence 3333 35679999998765
No 15
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=32.18 E-value=38 Score=33.05 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=29.5
Q ss_pred HHHhhcCCCCCCccchhhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 014443 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLE 387 (424)
Q Consensus 345 v~~~v~~~~d~s~~~~l~~~lpla~~~a~f~vWi~~SL~~T~~ 387 (424)
+.++.|-.++-.....+...+|+ ++|++|=+|||+.|++..-
T Consensus 178 ~~~hfG~~~n~~~i~~fvatfPV-iLDt~fKyWIFryLnriSP 219 (230)
T PF03040_consen 178 ILEHFGLPENEQFISLFVATFPV-ILDTIFKYWIFRYLNRISP 219 (230)
T ss_pred HHHhcCCCcccchhhhhhhhhhH-HHHHHHHHhhhcccCCCCh
Confidence 45566655443333445567898 6999999999999987543
No 16
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=29.30 E-value=54 Score=34.79 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=27.6
Q ss_pred HHHhhcCCCCCCccchhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 014443 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTL 386 (424)
Q Consensus 345 v~~~v~~~~d~s~~~~l~~~lpla~~~a~f~vWi~~SL~~T~ 386 (424)
+.++.|-.++-.....+...+|+ ++|++|=+|||+.|++..
T Consensus 370 i~~HfGl~~n~~~I~lFVaTfPV-iLDTiFKYWIFRyLNRiS 410 (422)
T PRK02507 370 IARHFGLPENRNFIFLFIATFPV-ILDTIFKYWIFRYLNRIS 410 (422)
T ss_pred HHHhcCCCcccchHHHHHhhhhH-HHHHHHHHHHHhhccCCC
Confidence 44555554432222334456898 699999999999998654
No 17
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=24.91 E-value=4.6e+02 Score=22.78 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCchhHHHHHHHHHHH
Q 014443 251 IIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSV 299 (424)
Q Consensus 251 ll~lq~~I~avi~l~~~e~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~ 299 (424)
.++-..-+..++++..++..++..++-+.|.+|........+..++-++
T Consensus 50 ~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~~~~if~gi~va~ 98 (110)
T TIGR02908 50 EIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPAQFIYGGVFVTM 98 (110)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchHHHHHHHHHHHHH
Confidence 3455555677888888999999999999997766332233344444333
No 18
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=24.51 E-value=89 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=18.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014443 363 FVLPVTVLDVCFILWIFSSLSRTLEKL 389 (424)
Q Consensus 363 ~~lpla~~~a~f~vWi~~SL~~T~~~L 389 (424)
.++|+++..+++|+++++.-++.-++.
T Consensus 5 ~l~~~vv~~~i~yf~~~rpqkK~~k~~ 31 (84)
T TIGR00739 5 TLLPLVLIFLIFYFLIIRPQRKRRKAH 31 (84)
T ss_pred HHHHHHHHHHHHHHheechHHHHHHHH
Confidence 456777888888888887665544433
No 19
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=22.72 E-value=1.2e+02 Score=29.73 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014443 393 RNLAKLELYRKFTNALAACVLLSIAWIGF 421 (424)
Q Consensus 393 rq~~KL~lYr~f~~~li~~vv~s~~fi~~ 421 (424)
+++.|-+.+-.|++++++.|+++|+++++
T Consensus 207 e~y~ksk~s~wf~~~miI~v~~sFVsMil 235 (244)
T KOG2678|consen 207 EKYDKSKLSYWFYITMIIFVILSFVSMIL 235 (244)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46777777999999999999999999764
No 20
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=20.83 E-value=93 Score=22.64 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHhHHHHHHH
Q 014443 360 KLFFVLPVTVLDVCFILWI 378 (424)
Q Consensus 360 ~l~~~lpla~~~a~f~vWi 378 (424)
.+++++|++++.++..++.
T Consensus 2 ~l~~lip~sl~l~~~~l~~ 20 (45)
T PF03597_consen 2 ILYILIPVSLILGLIALAA 20 (45)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3677889988888554443
No 21
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=20.83 E-value=1.4e+02 Score=25.54 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=18.3
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 014443 361 LFFVLPVTVLDVCFILWIFSSLSRTLE 387 (424)
Q Consensus 361 l~~~lpla~~~a~f~vWi~~SL~~T~~ 387 (424)
+..++|++++.+++|+++++.-++--+
T Consensus 18 ~~~ll~lvii~~i~yf~~~RpqkK~~k 44 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLIIRPQQKRQK 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 455678888888888888765544443
No 22
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=20.61 E-value=1.3e+02 Score=24.37 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=16.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Q 014443 363 FVLPVTVLDVCFILWIFSSLSRT 385 (424)
Q Consensus 363 ~~lpla~~~a~f~vWi~~SL~~T 385 (424)
.++|+++..+++|+|+++.-++-
T Consensus 4 ~li~lv~~~~i~yf~~~rpqkk~ 26 (82)
T PF02699_consen 4 MLIPLVIIFVIFYFLMIRPQKKQ 26 (82)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhhheecHHHHH
Confidence 45677788888888887755433
No 23
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=20.44 E-value=4.4e+02 Score=21.18 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=28.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014443 372 VCFILWI-FSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGF 421 (424)
Q Consensus 372 a~f~vWi-~~SL~~T~~~Lk~~rq~~KL~lYr~f~~~li~~vv~s~~fi~~ 421 (424)
.+-.+|+ .+.+++.=|..|+|+. .+|.-+...+..-=++||++++.
T Consensus 22 ~~~~~wi~~Ra~~~~DKT~~eRQa----~LyD~lmi~ImtIPILSFA~m~I 68 (72)
T PF13268_consen 22 LVSGIWILWRALRKKDKTAKERQA----FLYDMLMIAIMTIPILSFAFMGI 68 (72)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445676 3444444444555544 36777777777777889999864
No 24
>PRK06265 cobalt transport protein CbiM; Validated
Probab=20.33 E-value=6.4e+02 Score=23.68 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 014443 231 LAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALG 265 (424)
Q Consensus 231 i~Y~~l~i~W~~~~~k~rk~ll~lq~~I~avi~l~ 265 (424)
..|.+....+.+...|-+++-.|.|-..++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~f~~ 49 (199)
T PRK06265 15 GGWVIAAAGVALGLRRLDEERIPLVALLAAAFFVA 49 (199)
T ss_pred HHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 34444444444444555556777777766655553
Done!