Query 014443
Match_columns 424
No_of_seqs 222 out of 401
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eiy_A Adenosine receptor A2A/ 29.8 3.6E+02 0.012 25.4 17.2 26 363-389 211-236 (447)
2 3eml_A Human adenosine A2A rec 23.6 4.8E+02 0.016 24.8 15.4 21 363-384 201-221 (488)
3 3rko_A NADH-quinone oxidoreduc 17.3 4.9E+02 0.017 22.4 9.1 60 252-323 64-124 (147)
4 3sn6_R Lysozyme, beta-2 adrene 15.1 8.1E+02 0.028 23.9 13.8 25 363-388 357-381 (514)
5 2rdd_B UPF0092 membrane protei 15.0 1.6E+02 0.0055 19.2 3.4 23 363-385 5-27 (37)
6 1aly_A CD40 ligand; cytokine, 14.6 1.8E+02 0.0061 24.6 4.5 16 178-193 46-61 (146)
7 2vov_A MOPE, surface-associate 14.5 1E+02 0.0035 28.3 3.0 19 175-193 281-299 (336)
8 1pi7_A VPU protein, U ORF prot 12.4 2.1E+02 0.0072 18.9 3.3 24 227-250 9-32 (36)
9 1i3z_A EWS/FLI1 activated tran 11.2 3.1E+02 0.01 21.2 4.7 41 142-189 24-66 (103)
10 1rja_A Tyrosine-protein kinase 9.5 4.1E+02 0.014 20.4 4.9 42 141-189 23-66 (100)
No 1
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=29.81 E-value=3.6e+02 Score=25.44 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=16.5
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014443 363 FVLPVTVLDVCFILWIFSSLSRTLEKL 389 (424)
Q Consensus 363 ~~lpla~~~a~f~vWi~~SL~~T~~~L 389 (424)
.++|++ +..+.|.-|+..+.+..++.
T Consensus 211 ~~lP~~-ii~~~y~~I~~~l~~~~~~~ 236 (447)
T 4eiy_A 211 VLVPLL-LMLGVYLRIFLAARRQLADL 236 (447)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 467775 44566677777777765543
No 2
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=23.62 E-value=4.8e+02 Score=24.82 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=12.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHH
Q 014443 363 FVLPVTVLDVCFILWIFSSLSR 384 (424)
Q Consensus 363 ~~lpla~~~a~f~vWi~~SL~~ 384 (424)
.++|++ +..+.|..|+..+.+
T Consensus 201 ~~~P~~-ii~~~y~~I~~~l~~ 221 (488)
T 3eml_A 201 VLVPLL-LMLGVYLRIFLAARR 221 (488)
T ss_dssp THHHHH-HHHHHHHHHHHHHTC
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
Confidence 456664 444556667776654
No 3
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=17.29 E-value=4.9e+02 Score=22.35 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccceeeccC
Q 014443 252 IQLHYYITGVIALGM-CEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLG 323 (424)
Q Consensus 252 l~lq~~I~avi~l~~-~e~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~ 323 (424)
.++|+|+.+++++.. +|.++-+---...+.. ++ ...-..+.|+++|++++=|---+-.|.
T Consensus 64 FsirFfLiAilFlIFDvEi~~L~Pwa~~~~~~-----~~-------~~~~~~~~Fl~iL~~Gl~yEW~~GaL~ 124 (147)
T 3rko_A 64 LSAKFYLVAMFFVIFDVEALYLFAWSTSIRES-----GW-------VGFVEAAIFIFVLLAGLVYLVRIGALD 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTT-----HH-------HHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hH-------HHHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 689999999887765 7887743211111111 11 112234667777777776654444444
No 4
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=15.10 E-value=8.1e+02 Score=23.91 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=14.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014443 363 FVLPVTVLDVCFILWIFSSLSRTLEK 388 (424)
Q Consensus 363 ~~lpla~~~a~f~vWi~~SL~~T~~~ 388 (424)
.++|++ +..+.|.-|+..+++..+.
T Consensus 357 ~~lP~~-ii~~~y~~I~~~l~~~~~~ 381 (514)
T 3sn6_R 357 FYVPLV-IMVFVYSRVFQEAKRQLQK 381 (514)
T ss_dssp THHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhc
Confidence 345654 3345566677777665543
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.03 E-value=1.6e+02 Score=19.23 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=15.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Q 014443 363 FVLPVTVLDVCFILWIFSSLSRT 385 (424)
Q Consensus 363 ~~lpla~~~a~f~vWi~~SL~~T 385 (424)
.++|+++..+++|+.+++-=++-
T Consensus 5 ~~l~~v~~~~ifYFl~iRPQ~Kr 27 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMILRPQQKR 27 (37)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 45677777778887776655443
No 6
>1aly_A CD40 ligand; cytokine, TNF, hyper-IGM syndrome; 2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1i9r_A 3qd6_A* 3lkj_A*
Probab=14.65 E-value=1.8e+02 Score=24.63 Aligned_cols=16 Identities=31% Similarity=0.862 Sum_probs=13.5
Q ss_pred EEeCccceEEEEEEEe
Q 014443 178 VEIERTGMYYLYFMYC 193 (424)
Q Consensus 178 y~V~ktG~Y~v~~~~C 193 (424)
..|+++|.|.||...+
T Consensus 46 L~V~~~GlY~VYsQV~ 61 (146)
T 1aly_A 46 LTVKRQGLYYIYAQVT 61 (146)
T ss_dssp EEESSCEEEEEEEEEE
T ss_pred EEECCCeEEEEEEEEE
Confidence 7899999999987655
No 7
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized tryptophan, methanotroph bacterium, kunurenine, copper binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB: 2vox_A* 2vow_A
Probab=14.46 E-value=1e+02 Score=28.28 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=16.9
Q ss_pred ceeEEeCccceEEEEEEEe
Q 014443 175 SEEVEIERTGMYYLYFMYC 193 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C 193 (424)
.++.+.+|||+|.+|.+|.
T Consensus 281 tksitlpktgyymlyvanv 299 (336)
T 2vov_A 281 TKSITLPKTGYYMLYVANV 299 (336)
T ss_dssp EEEEECSSSEEEEEEEEEC
T ss_pred eeeeeccCcceEEEEEeee
Confidence 5689999999999999885
No 8
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=12.44 E-value=2.1e+02 Score=18.94 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchh
Q 014443 227 GLMSLAYLVLGLAWFLRFVQLWKD 250 (424)
Q Consensus 227 ~~m~i~Y~~l~i~W~~~~~k~rk~ 250 (424)
..+.++..+.-+.|.+.+..+||.
T Consensus 9 valivalIiaIVVWtiv~ieYrk~ 32 (36)
T 1pi7_A 9 VALVVAIIIAIVVWSIVIIEGRGG 32 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888999999888764
No 9
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=11.17 E-value=3.1e+02 Score=21.16 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=23.7
Q ss_pred CCCCEEecCCCCCCCCceeeeeeeccCccccccceeEEeC--ccceEEEE
Q 014443 142 SVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIE--RTGMYYLY 189 (424)
Q Consensus 142 ~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~V~--ktG~Y~v~ 189 (424)
.+|.|+++++..++.. ..+.+.. ++. ..+|.|. +.|.|++-
T Consensus 24 ~~G~FLVR~S~~~~g~-~~LSv~~--~~~----v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 24 VDGNFLIRDSESVPGA-LCLCVSF--KKL----VYSYRIFREKHGYYRIE 66 (103)
T ss_dssp STTEEEEEECSSSTTC-EEEEEEC--SSS----EEEEEEEECTTSCEEEC
T ss_pred CCceEEEEeCCCCCCC-EEEEEEE--CCE----EEEEEEEECCCCeEEEe
Confidence 6799999988665542 1222222 111 3456664 57888764
No 10
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=9.54 E-value=4.1e+02 Score=20.37 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=23.8
Q ss_pred CCCCCEEecCCCCCCCCceeeeeeeccCccccccceeEEeC--ccceEEEE
Q 014443 141 CSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIE--RTGMYYLY 189 (424)
Q Consensus 141 C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~V~--ktG~Y~v~ 189 (424)
+.+|.|+++++.+++.. ..+.+.. ++. ..+|.|. ++|.|++.
T Consensus 23 ~~~G~FLVR~S~~~~g~-~~LSv~~--~~~----v~H~~I~~~~~g~~~l~ 66 (100)
T 1rja_A 23 NATGAFLIRVSEKPSAD-YVLSVRD--TQA----VRHYKIWRRAGGRLHLN 66 (100)
T ss_dssp CSSCCEEEEECSSSSSC-EEEEECT--TSS----CEEEEEEECSSSCEEEE
T ss_pred CCCCEEEEEeCCCCCCC-EEEEEEE--CCE----EEEEEEEEcCCCcEEEC
Confidence 67899999988665432 1222221 111 3456665 47877654
Done!