Query 014443
Match_columns 424
No_of_seqs 222 out of 401
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 11:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1alya_ b.22.1.1 (A:) Extracel 32.3 35 0.0025 27.1 5.8 37 177-213 45-85 (146)
2 d1kxga_ b.22.1.1 (A:) Soluble 19.6 88 0.0064 24.5 5.9 36 175-212 41-76 (144)
3 d1dg6a_ b.22.1.1 (A:) Apoptosi 15.5 1.2E+02 0.0089 23.9 5.9 19 175-193 52-70 (162)
4 d1hxra_ b.88.1.1 (A:) RabGEF M 14.1 25 0.0019 27.4 1.0 25 109-133 62-88 (115)
5 d1xu1a_ b.22.1.1 (A:) A prolif 13.3 57 0.0042 25.4 3.0 20 175-194 39-58 (137)
6 d1i3za_ d.93.1.1 (A:) Ews/fli1 12.7 1.3E+02 0.0096 21.7 5.0 42 141-189 23-66 (103)
7 d1tnra_ b.22.1.1 (A:) Tumor ne 11.4 64 0.0047 25.2 2.8 19 175-193 35-53 (144)
8 d2cs0a1 d.93.1.1 (A:8-113) Hem 11.4 97 0.0071 22.5 3.8 17 140-156 27-43 (106)
9 d2tnfa_ b.22.1.1 (A:) Tumor ne 11.4 65 0.0047 25.4 2.8 19 175-193 37-55 (148)
10 d1a81a1 d.93.1.1 (A:9-137) Syk 10.8 1.6E+02 0.012 22.5 5.0 18 139-156 24-41 (129)
No 1
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.26 E-value=35 Score=27.08 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=25.6
Q ss_pred eEEeCccceEEEEEEEeC----CCCCceEEEEEEEEECCCC
Q 014443 177 EVEIERTGMYYLYFMYCD----PQLKGTMIKGRTVWKNPDG 213 (424)
Q Consensus 177 ~y~V~ktG~Y~v~~~~C~----~~~~~~~~~g~v~fkN~yG 213 (424)
...|+++|+|.||...+. +......+...+..+++.+
T Consensus 45 ~L~V~~~G~Y~VYsQv~f~~~~~~~~~~~~~~~v~~~~~~~ 85 (146)
T d1alya_ 45 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR 85 (146)
T ss_dssp EEEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTTS
T ss_pred EEEeCCCeEEEEEEEEEEeccCCCCCceeEEEEEEEEcCCC
Confidence 589999999999976542 2222346777777777654
No 2
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.63 E-value=88 Score=24.55 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=23.4
Q ss_pred ceeEEeCccceEEEEEEEeCCCCCceEEEEEEEEECCC
Q 014443 175 SEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPD 212 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~~~~~~~~~~g~v~fkN~y 212 (424)
+.+..|+++|+|.||...+..+. . .-.++..+++..
T Consensus 41 ~g~L~V~~~GlYfVYsQV~F~~~-~-~~lsh~v~~~~~ 76 (144)
T d1kxga_ 41 ENKILVKETGYFFIYGQVLYTDK-T-YAMGHLIQRKKV 76 (144)
T ss_dssp TTEEEECSCEEEEEEEEEEECCC-S-SEEEEEEEEECS
T ss_pred CCEEEEccceEEEEEEEEEEeCC-C-cccceEEEEEec
Confidence 55789999999999987765322 1 223455555543
No 3
>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.50 E-value=1.2e+02 Score=23.93 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.4
Q ss_pred ceeEEeCccceEEEEEEEe
Q 014443 175 SEEVEIERTGMYYLYFMYC 193 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C 193 (424)
+.+..|+++|+|.||...+
T Consensus 52 ~G~L~V~~~G~YfVYsQV~ 70 (162)
T d1dg6a_ 52 NGELVIHEKGFYYIYSQTY 70 (162)
T ss_dssp TTEEEESSCEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEEEE
Confidence 4578999999999986553
No 4
>d1hxra_ b.88.1.1 (A:) RabGEF Mss4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.13 E-value=25 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.273 Sum_probs=18.6
Q ss_pred EEEeeccccccCCcCC--CCceeecCc
Q 014443 109 IILEVKERERIGGSFL--KTDLLCCTH 133 (424)
Q Consensus 109 vIfe~~D~~~iG~~~~--g~~~~cC~~ 133 (424)
.+=+.=||++||.+.. +.|..+|-+
T Consensus 62 ~V~Dm~~FeNVGfSk~v~~~KyLiCAD 88 (115)
T d1hxra_ 62 LVNDMFIFENVGFTKDVGNVKFLVCAD 88 (115)
T ss_dssp EESCGGGCSSCEECCCBTTEEEEECTT
T ss_pred EecccceeeceeeccccCCeEEEEEec
Confidence 3445568999999876 677888844
No 5
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.29 E-value=57 Score=25.42 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.8
Q ss_pred ceeEEeCccceEEEEEEEeC
Q 014443 175 SEEVEIERTGMYYLYFMYCD 194 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C~ 194 (424)
..+..|+++|+|.||...|.
T Consensus 39 ~g~L~V~~~G~YyVYsQV~f 58 (137)
T d1xu1a_ 39 GDIVRVWDTGIYLLYSQVLF 58 (137)
T ss_dssp TTEEEECSCEEEEEEEEEEE
T ss_pred CCEEEEccceEEEEEEEEEE
Confidence 45799999999999987664
No 6
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.73 E-value=1.3e+02 Score=21.69 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=24.0
Q ss_pred CCCCCEEecCCCCCCCCceeeeeeeccCccccccceeEEe--CccceEEEE
Q 014443 141 CSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEI--ERTGMYYLY 189 (424)
Q Consensus 141 C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~V--~ktG~Y~v~ 189 (424)
..+|.|+++++.+++.. ..+.+.. ++. ..+|.| .++|.|++.
T Consensus 23 ~~~G~FLVR~S~~~~g~-~~LSv~~--~~~----v~H~~I~~~~~g~~~~~ 66 (103)
T d1i3za_ 23 GVDGNFLIRDSESVPGA-LCLCVSF--KKL----VYSYRIFREKHGYYRIE 66 (103)
T ss_dssp CSTTEEEEEECSSSTTC-EEEEEEC--SSS----EEEEEEEECTTSCEEEC
T ss_pred CCCCeEEEEecCCCCCC-EEEEEEe--CCe----EEEEEeEEcCCCcEEEe
Confidence 35799999988766642 2232222 211 245555 467787754
No 7
>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.41 E-value=64 Score=25.16 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=16.0
Q ss_pred ceeEEeCccceEEEEEEEe
Q 014443 175 SEEVEIERTGMYYLYFMYC 193 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C 193 (424)
+....|+++|+|.||...|
T Consensus 35 ~g~L~V~~~G~Y~VYsQv~ 53 (144)
T d1tnra_ 35 NNSLLVPTSGIYFVYSQVV 53 (144)
T ss_dssp TTEEECCSSEEEEEEEEEE
T ss_pred CCEEEEccCeEEEEEEEEE
Confidence 5579999999999997655
No 8
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.38 E-value=97 Score=22.54 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=13.2
Q ss_pred CCCCCCEEecCCCCCCC
Q 014443 140 SCSVGEVIIHVDPENHE 156 (424)
Q Consensus 140 ~C~~g~~Ii~~~~~~~~ 156 (424)
.|++|.|+++++.+++.
T Consensus 27 ~~~~G~FLvR~S~~~~~ 43 (106)
T d2cs0a1 27 SQPLGSFLIRVSHSHVG 43 (106)
T ss_dssp TSCTTCEEEEECSSSSS
T ss_pred CCCCCcEEEEecCCCCC
Confidence 47789999999766554
No 9
>d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.36 E-value=65 Score=25.37 Aligned_cols=19 Identities=16% Similarity=0.446 Sum_probs=16.0
Q ss_pred ceeEEeCccceEEEEEEEe
Q 014443 175 SEEVEIERTGMYYLYFMYC 193 (424)
Q Consensus 175 ~~~y~V~ktG~Y~v~~~~C 193 (424)
+.+..|+++|+|.||...|
T Consensus 37 ~g~L~V~~~G~YyVYsQv~ 55 (148)
T d2tnfa_ 37 DNQLVVPADGLYLVYSQVL 55 (148)
T ss_dssp TTEEECSSSEEEEEEEEEE
T ss_pred CCEEEECCCeEEEEEEEEE
Confidence 4578999999999997665
No 10
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.81 E-value=1.6e+02 Score=22.49 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=13.6
Q ss_pred CCCCCCCEEecCCCCCCC
Q 014443 139 GSCSVGEVIIHVDPENHE 156 (424)
Q Consensus 139 g~C~~g~~Ii~~~~~~~~ 156 (424)
..|.+|.|++|++.+.+.
T Consensus 24 ~g~~dG~FLVR~S~~~~g 41 (129)
T d1a81a1 24 GGMSDGLYLLRQSRNYLG 41 (129)
T ss_dssp TTCCTTEEEEEECSSSTT
T ss_pred cCCCCccEEEEccCCCCc
Confidence 457889999998766553
Done!